-- dump date 20140619_115652 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 228405000001 SEQ_END SEQ_END NC_008358.1 3705021 3705021 DR NC_008358.1; contig end 3705021..3705021 Hyphomonas neptunium ATCC 15444 YP_758735.1 CDS HNE_0001 NC_008358.1 258 1100 D identified by similarity to GB:CAE25742.1; match to protein family HMM PF03618; hypothetical protein 258..1100 Hyphomonas neptunium ATCC 15444 4287307 YP_758736.1 CDS HNE_0002 NC_008358.1 1097 1693 D identified by similarity to SP:Q02169; match to protein family HMM PF02545; putative maf protein 1097..1693 Hyphomonas neptunium ATCC 15444 4290506 YP_758737.1 CDS aroE NC_008358.1 1690 2502 D identified by similarity to SP:P15770; match to protein family HMM PF01488; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 1690..2502 Hyphomonas neptunium ATCC 15444 4289096 YP_758738.1 CDS coaE NC_008358.1 2499 3107 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 2499..3107 Hyphomonas neptunium ATCC 15444 4287062 YP_758739.1 CDS dnaQ NC_008358.1 3104 3802 D identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 3104..3802 Hyphomonas neptunium ATCC 15444 4290380 YP_758740.1 CDS secB NC_008358.1 3810 4310 R identified by match to protein family HMM PF02556; match to protein family HMM TIGR00809; protein-export protein SecB complement(3810..4310) Hyphomonas neptunium ATCC 15444 4287977 YP_758741.1 CDS HNE_0007 NC_008358.1 4445 5059 D identified by match to protein family HMM PF04280; Tim44 domain-containing protein 4445..5059 Hyphomonas neptunium ATCC 15444 4289127 YP_758742.1 CDS HNE_0008 NC_008358.1 5111 6349 D identified by similarity to GB:AAF42553.1; match to protein family HMM PF03562; match to protein family HMM PF06725; putative transglycosylase MltA 5111..6349 Hyphomonas neptunium ATCC 15444 4288220 YP_758743.1 CDS HNE_0009 NC_008358.1 6355 6885 D identified by match to protein family HMM PF01713; Smr domain-containing protein 6355..6885 Hyphomonas neptunium ATCC 15444 4288375 YP_758744.1 CDS HNE_0010 NC_008358.1 6941 7612 R identified by similarity to PIR:D97688; match to protein family HMM PF06242; hypothetical protein complement(6941..7612) Hyphomonas neptunium ATCC 15444 4287807 YP_758745.1 CDS HNE_0011 NC_008358.1 7751 8725 R identified by match to protein family HMM PF00107; match to protein family HMM TIGR02824; NAD(P)H quinone oxidoreductase PIG3 family protein complement(7751..8725) Hyphomonas neptunium ATCC 15444 4290201 YP_758746.1 CDS HNE_0012 NC_008358.1 8831 9016 D identified by similarity to GB:CAE26360.1; hypothetical protein 8831..9016 Hyphomonas neptunium ATCC 15444 4287397 YP_758747.1 CDS HNE_0013 NC_008358.1 9083 9625 D identified by similarity to GB:AAK25257.1; match to protein family HMM PF07323; hypothetical protein 9083..9625 Hyphomonas neptunium ATCC 15444 4287242 YP_758748.1 CDS HNE_0014 NC_008358.1 9666 10274 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(9666..10274) Hyphomonas neptunium ATCC 15444 4288880 YP_758749.1 CDS HNE_0015 NC_008358.1 10429 11052 D identified by match to protein family HMM PF00484; carbonic anhydrase 10429..11052 Hyphomonas neptunium ATCC 15444 4287379 YP_758750.1 CDS ppa NC_008358.1 11123 11662 R identified by match to protein family HMM PF00719; inorganic pyrophosphatase complement(11123..11662) Hyphomonas neptunium ATCC 15444 4287188 YP_758751.1 CDS HNE_0017 NC_008358.1 11772 12671 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(11772..12671) Hyphomonas neptunium ATCC 15444 4289179 YP_758752.1 CDS HNE_0018 NC_008358.1 12790 13515 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 12790..13515 Hyphomonas neptunium ATCC 15444 4290194 YP_758753.1 CDS HNE_0019 NC_008358.1 13582 14001 D identified by match to protein family HMM PF02627; carboxymuconolactone decarboxylase domain-containing protein 13582..14001 Hyphomonas neptunium ATCC 15444 4290014 YP_758754.1 CDS HNE_0020 NC_008358.1 13998 14339 D identified by similarity to PIR:AC2682; hypothetical protein 13998..14339 Hyphomonas neptunium ATCC 15444 4288841 YP_758755.1 CDS HNE_0021 NC_008358.1 14352 14963 R identified by match to protein family HMM TIGR02466; hypothetical protein complement(14352..14963) Hyphomonas neptunium ATCC 15444 4290010 YP_758756.1 CDS HNE_0022 NC_008358.1 14993 15475 R GTP-binding protein complement(14993..15475) Hyphomonas neptunium ATCC 15444 4289997 YP_758757.1 CDS HNE_0023 NC_008358.1 15513 15899 R hypothetical protein complement(15513..15899) Hyphomonas neptunium ATCC 15444 4287901 YP_758758.1 CDS HNE_0024 NC_008358.1 15919 16362 R identified by similarity to GB:BAC48418.1; hypothetical protein complement(15919..16362) Hyphomonas neptunium ATCC 15444 4289076 YP_758759.1 CDS HNE_0025 NC_008358.1 16377 17000 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(16377..17000) Hyphomonas neptunium ATCC 15444 4289346 YP_758760.1 CDS HNE_0026 NC_008358.1 17211 18095 R identified by similarity to GB:AAK24228.1; hypothetical protein complement(17211..18095) Hyphomonas neptunium ATCC 15444 4288203 YP_758761.1 CDS HNE_0027 NC_008358.1 18285 18770 D identified by similarity to SP:P29209; match to protein family HMM PF00011; 16 kDa heat shock protein A 18285..18770 Hyphomonas neptunium ATCC 15444 4288763 YP_758762.1 CDS HNE_0028 NC_008358.1 18823 19851 R identified by similarity to PIR:S76871; hypothetical protein complement(18823..19851) Hyphomonas neptunium ATCC 15444 4288081 YP_758763.1 CDS HNE_0029 NC_008358.1 19981 21030 D identified by similarity to SP:Q9R9N1; match to protein family HMM PF00534; glycosyl transferase family protein 19981..21030 Hyphomonas neptunium ATCC 15444 4289433 YP_758764.1 CDS HNE_0030 NC_008358.1 21031 21489 R identified by match to protein family HMM PF00383; riboflavin biosynthesis protein RibD domain-containing protein complement(21031..21489) Hyphomonas neptunium ATCC 15444 4289604 YP_758765.1 CDS HNE_0031 NC_008358.1 21486 22199 R identified by similarity to SP:P30798; match to protein family HMM PF00300; match to protein family HMM TIGR01258; phosphoglycerate mutase complement(21486..22199) Hyphomonas neptunium ATCC 15444 4288365 YP_758766.1 CDS HNE_0032 NC_008358.1 22276 23418 R identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase complement(22276..23418) Hyphomonas neptunium ATCC 15444 4289986 YP_758767.1 CDS HNE_0033 NC_008358.1 23546 24124 D hypothetical protein 23546..24124 Hyphomonas neptunium ATCC 15444 4288454 YP_758768.1 CDS HNE_0034 NC_008358.1 24240 26420 D identified by similarity to SP:Q06903; match to protein family HMM PF00326; match to protein family HMM PF02897; prolyl oligopeptidase 24240..26420 Hyphomonas neptunium ATCC 15444 4290190 YP_758769.1 CDS HNE_0035 NC_008358.1 26519 27115 D identified by similarity to GB:CAH11471.1; hypothetical protein 26519..27115 Hyphomonas neptunium ATCC 15444 4289579 YP_758770.1 CDS ffh NC_008358.1 27293 28768 D identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein 27293..28768 Hyphomonas neptunium ATCC 15444 4288901 YP_758771.1 CDS HNE_0037 NC_008358.1 28765 29076 D identified by match to protein family HMM PF01817; match to protein family HMM TIGR01795; chorismate mutase 28765..29076 Hyphomonas neptunium ATCC 15444 4288868 YP_758772.1 CDS rpsP NC_008358.1 29117 29560 D identified by similarity to SP:P21474; match to protein family HMM PF00886; match to protein family HMM TIGR00002; 30S ribosomal protein S16 29117..29560 Hyphomonas neptunium ATCC 15444 4289180 YP_758773.1 CDS HNE_0039 NC_008358.1 29676 31655 R identified by match to protein family HMM PF01757; acyltransferase family protein complement(29676..31655) Hyphomonas neptunium ATCC 15444 4290317 YP_758774.1 CDS HNE_0040 NC_008358.1 31948 32811 D identified by match to protein family HMM PF00030; beta/gamma crystallin family protein 31948..32811 Hyphomonas neptunium ATCC 15444 4286992 YP_758775.1 CDS rimM NC_008358.1 32822 33367 D identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM 32822..33367 Hyphomonas neptunium ATCC 15444 4289722 YP_758776.1 CDS HNE_0042 NC_008358.1 33458 34978 D beta/gamma crystallin domain-containing protein 33458..34978 Hyphomonas neptunium ATCC 15444 4287653 YP_758777.1 CDS HNE_0043 NC_008358.1 34988 35737 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(34988..35737) Hyphomonas neptunium ATCC 15444 4288225 YP_758778.1 CDS kefC NC_008358.1 35891 37696 D identified by similarity to SP:P03819; match to protein family HMM PF00999; match to protein family HMM PF02254; match to protein family HMM TIGR00932; glutathione-regulated potassium-efflux system protein KefC 35891..37696 Hyphomonas neptunium ATCC 15444 4288016 YP_758779.1 CDS trmD NC_008358.1 37728 38483 D identified by match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase 37728..38483 Hyphomonas neptunium ATCC 15444 4288057 YP_758780.1 CDS rplS NC_008358.1 38470 39024 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 38470..39024 Hyphomonas neptunium ATCC 15444 4287267 YP_758781.1 CDS leuC1 NC_008358.1 39148 40545 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 39148..40545 Hyphomonas neptunium ATCC 15444 4290012 YP_758782.1 CDS bioB NC_008358.1 40571 41533 D identified by similarity to SP:P36569; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase 40571..41533 Hyphomonas neptunium ATCC 15444 4289438 YP_758783.1 CDS cysK NC_008358.1 41629 42612 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; cysteine synthase A 41629..42612 Hyphomonas neptunium ATCC 15444 4290167 YP_758784.1 CDS HNE_0050 NC_008358.1 42705 43343 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 42705..43343 Hyphomonas neptunium ATCC 15444 4290329 YP_758785.1 CDS HNE_0051 NC_008358.1 43340 44188 D identified by match to protein family HMM PF00903; glyoxalase family protein 43340..44188 Hyphomonas neptunium ATCC 15444 4288614 YP_758786.1 CDS leuD NC_008358.1 44200 44829 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 44200..44829 Hyphomonas neptunium ATCC 15444 4290183 YP_758787.1 CDS HNE_0053 NC_008358.1 44952 45272 D putative lipoprotein 44952..45272 Hyphomonas neptunium ATCC 15444 4289525 YP_758788.1 CDS HNE_0054 NC_008358.1 45471 45668 D hypothetical protein 45471..45668 Hyphomonas neptunium ATCC 15444 4290068 YP_758789.1 CDS HNE_0055 NC_008358.1 45729 46049 D putative lipoprotein 45729..46049 Hyphomonas neptunium ATCC 15444 4287029 YP_758790.1 CDS leuB NC_008358.1 46142 47194 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 46142..47194 Hyphomonas neptunium ATCC 15444 4289973 YP_758791.1 CDS HNE_0057 NC_008358.1 47276 48466 D identified by match to protein family HMM PF04909; amidohydrolase family protein 47276..48466 Hyphomonas neptunium ATCC 15444 4287734 YP_758792.1 CDS HNE_0058 NC_008358.1 48521 48889 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 48521..48889 Hyphomonas neptunium ATCC 15444 4290469 YP_758793.1 CDS HNE_0059 NC_008358.1 48886 49419 D identified by similarity to PIR:AC2826; hypothetical protein 48886..49419 Hyphomonas neptunium ATCC 15444 4289910 YP_758794.1 CDS HNE_0060 NC_008358.1 49416 49787 R identified by similarity to GB:AAM31296.1; hypothetical protein complement(49416..49787) Hyphomonas neptunium ATCC 15444 4289516 YP_758795.1 CDS asd NC_008358.1 49913 50947 D identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase 49913..50947 Hyphomonas neptunium ATCC 15444 4288647 YP_758796.1 CDS HNE_0062 NC_008358.1 51015 51512 R identified by match to protein family HMM PF04073; YbaK/prolyl-tRNA synthetase domain-containing protein complement(51015..51512) Hyphomonas neptunium ATCC 15444 4288491 YP_758797.1 CDS HNE_0063 NC_008358.1 51575 52309 D hypothetical protein 51575..52309 Hyphomonas neptunium ATCC 15444 4288008 YP_758798.1 CDS hisE NC_008358.1 52373 52735 R identified by similarity to SP:P50935; match to protein family HMM PF01503; phosphoribosyl-ATP diphosphatase complement(52373..52735) Hyphomonas neptunium ATCC 15444 4289494 YP_758799.1 CDS HNE_0065 NC_008358.1 52868 53689 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 52868..53689 Hyphomonas neptunium ATCC 15444 4290327 YP_758800.1 CDS hisF NC_008358.1 53725 54483 R identified by match to protein family HMM PF00977; match to protein family HMM TIGR00735; Imidazole glycerol phosphate synthase cyclase subunit complement(53725..54483) Hyphomonas neptunium ATCC 15444 4287275 YP_758801.1 CDS HNE_0067 NC_008358.1 54635 54826 D hypothetical protein 54635..54826 Hyphomonas neptunium ATCC 15444 4290319 YP_758802.1 CDS HNE_0068 NC_008358.1 54933 55694 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 54933..55694 Hyphomonas neptunium ATCC 15444 4290266 YP_758803.1 CDS HNE_0069 NC_008358.1 55978 56187 D identified by similarity to PIR:AC1282; hypothetical protein 55978..56187 Hyphomonas neptunium ATCC 15444 4289141 YP_758804.1 CDS hisA NC_008358.1 56214 56939 R identified by match to protein family HMM PF00977; match to protein family HMM TIGR00007; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(56214..56939) Hyphomonas neptunium ATCC 15444 4287625 YP_758805.1 CDS hisH NC_008358.1 56936 57568 R identified by match to protein family HMM PF00117; match to protein family HMM TIGR01855; imidazoleglycerol phosphate synthase, glutamine amidotransferase subunit complement(56936..57568) Hyphomonas neptunium ATCC 15444 4288944 YP_758806.1 CDS HNE_0072 NC_008358.1 57668 58975 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; putative transporter 57668..58975 Hyphomonas neptunium ATCC 15444 4290031 YP_758807.1 CDS hisB NC_008358.1 58991 59617 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(58991..59617) Hyphomonas neptunium ATCC 15444 4290184 YP_758808.1 CDS HNE_0074 NC_008358.1 59697 61481 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 59697..61481 Hyphomonas neptunium ATCC 15444 4289340 YP_758809.1 CDS HNE_0075 NC_008358.1 61463 61981 R putative acetyltransferase complement(61463..61981) Hyphomonas neptunium ATCC 15444 4289879 YP_758810.1 CDS HNE_0076 NC_008358.1 61978 62412 R identified by similarity to GB:CAD17468.1; hypothetical protein complement(61978..62412) Hyphomonas neptunium ATCC 15444 4288988 YP_758811.1 CDS HNE_0077 NC_008358.1 62417 62845 R hypothetical protein complement(62417..62845) Hyphomonas neptunium ATCC 15444 4289416 YP_758812.1 CDS mclA NC_008358.1 62935 63990 R identified by similarity to GB:AAB58884.1; match to protein family HMM PF03328; malyl-CoA lyase complement(62935..63990) Hyphomonas neptunium ATCC 15444 4287832 YP_758813.1 CDS HNE_0079 NC_008358.1 64086 64286 D identified by match to protein family HMM PF01679; hypothetical protein 64086..64286 Hyphomonas neptunium ATCC 15444 4287050 YP_758814.1 CDS xerD NC_008358.1 64291 65220 R identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerD complement(64291..65220) Hyphomonas neptunium ATCC 15444 4287906 YP_758815.1 CDS aroK NC_008358.1 65507 66067 D identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase 65507..66067 Hyphomonas neptunium ATCC 15444 4288804 YP_758816.1 CDS aroB NC_008358.1 66064 67185 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 66064..67185 Hyphomonas neptunium ATCC 15444 4289240 YP_758817.1 CDS HNE_0083 NC_008358.1 67214 68488 D identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; CBS/transporter associated domain-containing protein 67214..68488 Hyphomonas neptunium ATCC 15444 4289289 YP_758818.1 CDS HNE_0084 NC_008358.1 68495 68776 R identified by match to protein family HMM PF01722; BolA family protein complement(68495..68776) Hyphomonas neptunium ATCC 15444 4290152 YP_758819.1 CDS HNE_0085 NC_008358.1 68808 69431 D identified by match to protein family HMM PF00226; DnaJ domain-containing protein 68808..69431 Hyphomonas neptunium ATCC 15444 4288223 YP_758820.1 CDS HNE_0086 NC_008358.1 69846 70310 D spore coat family protein 69846..70310 Hyphomonas neptunium ATCC 15444 4290446 YP_758821.1 CDS HNE_0087 NC_008358.1 70322 71002 D identified by similarity to GB:CAD16401.1; hypothetical protein 70322..71002 Hyphomonas neptunium ATCC 15444 4287321 YP_758822.1 CDS HNE_0088 NC_008358.1 71056 73308 D identified by match to protein family HMM PF00577; fimbrial usher protein 71056..73308 Hyphomonas neptunium ATCC 15444 4289252 YP_758823.1 CDS HNE_0089 NC_008358.1 73309 73767 D putative lipoprotein 73309..73767 Hyphomonas neptunium ATCC 15444 4288669 YP_758824.1 CDS HNE_0090 NC_008358.1 73871 74860 D identified by similarity to SP:P34943; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; putative NADH-quinone oxidoreductase 73871..74860 Hyphomonas neptunium ATCC 15444 4289772 YP_758825.1 CDS HNE_0091 NC_008358.1 74864 75721 R identified by match to protein family HMM PF02673; putative undecaprenol kinase complement(74864..75721) Hyphomonas neptunium ATCC 15444 4288119 YP_758826.1 CDS gltD NC_008358.1 75961 77406 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 75961..77406 Hyphomonas neptunium ATCC 15444 4289253 YP_758827.1 CDS gltB NC_008358.1 77412 81953 D identified by similarity to SP:Q05755; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase large subunit 77412..81953 Hyphomonas neptunium ATCC 15444 4287229 YP_758828.1 CDS HNE_0094 NC_008358.1 82002 82889 R identified by similarity to GB:AAM41903.1; putative lipoprotein complement(82002..82889) Hyphomonas neptunium ATCC 15444 4289855 YP_758829.1 CDS HNE_0095 NC_008358.1 83174 84337 D identified by match to protein family HMM PF00155; match to protein family HMM TIGR01409; classes I and II aminotransferase 83174..84337 Hyphomonas neptunium ATCC 15444 4290094 YP_758830.1 CDS HNE_0096 NC_008358.1 84385 85932 R identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein complement(84385..85932) Hyphomonas neptunium ATCC 15444 4289347 YP_758831.1 CDS HNE_0097 NC_008358.1 86041 86346 D identified by match to protein family HMM PF02036; SCP-2 sterol transfer family protein 86041..86346 Hyphomonas neptunium ATCC 15444 4289572 YP_758832.1 CDS HNE_0098 NC_008358.1 86433 87386 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 86433..87386 Hyphomonas neptunium ATCC 15444 4287793 YP_758833.1 CDS baiB NC_008358.1 87421 88878 D identified by similarity to SP:P19409; match to protein family HMM PF00501; bile acid-coenzyme A ligase 87421..88878 Hyphomonas neptunium ATCC 15444 4290531 YP_758834.1 CDS HNE_0100 NC_008358.1 88934 89938 D identified by match to protein family HMM PF00107; class III alcohol dehydrogenase 88934..89938 Hyphomonas neptunium ATCC 15444 4288340 YP_758835.1 CDS HNE_0101 NC_008358.1 89975 91498 R identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; amino acid carrier protein complement(89975..91498) Hyphomonas neptunium ATCC 15444 4289841 YP_758836.1 CDS HNE_0102 NC_008358.1 91544 91666 R hypothetical protein complement(91544..91666) Hyphomonas neptunium ATCC 15444 4288560 YP_758837.1 CDS HNE_0103 NC_008358.1 91688 93037 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 91688..93037 Hyphomonas neptunium ATCC 15444 4290280 YP_758838.1 CDS HNE_0104 NC_008358.1 93076 94020 D identified by match to protein family HMM PF02562; PhoH family protein 93076..94020 Hyphomonas neptunium ATCC 15444 4289439 YP_758839.1 CDS HNE_0105 NC_008358.1 94031 94483 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 94031..94483 Hyphomonas neptunium ATCC 15444 4288371 YP_758840.1 CDS HNE_0106 NC_008358.1 94489 95349 D identified by match to protein family HMM PF00571; match to protein family HMM PF03471; CBS/transporter associated domain-containing protein 94489..95349 Hyphomonas neptunium ATCC 15444 4289474 YP_758841.1 CDS lnt NC_008358.1 95356 96999 D identified by match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 95356..96999 Hyphomonas neptunium ATCC 15444 4288197 YP_758842.1 CDS HNE_0108 NC_008358.1 97041 97478 D identified by match to protein family HMM PF01381; DNA-binding protein 97041..97478 Hyphomonas neptunium ATCC 15444 4288918 YP_758843.1 CDS trmB NC_008358.1 97510 98169 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 97510..98169 Hyphomonas neptunium ATCC 15444 4288247 YP_758844.1 CDS HNE_0110 NC_008358.1 98355 98564 D identified by match to protein family HMM PF00313; cold shock DNA-binding protein 98355..98564 Hyphomonas neptunium ATCC 15444 4287155 YP_758845.1 CDS HNE_0111 NC_008358.1 98773 99372 D identified by similarity to SP:Q92SW6; match to protein family HMM PF02576; hypothetical protein 98773..99372 Hyphomonas neptunium ATCC 15444 4290453 YP_758846.1 CDS nusA NC_008358.1 99369 101147 D identified by similarity to SP:P03003; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954; transcription termination factor NusA 99369..101147 Hyphomonas neptunium ATCC 15444 4288969 YP_758847.1 CDS HNE_0113 NC_008358.1 101122 101808 D identified by similarity to GB:AAK22031.1; match to protein family HMM PF04296; hypothetical protein 101122..101808 Hyphomonas neptunium ATCC 15444 4290396 YP_758848.1 CDS infB NC_008358.1 101864 104425 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 101864..104425 Hyphomonas neptunium ATCC 15444 4287894 YP_758849.1 CDS rbfA NC_008358.1 104435 104842 D identified by similarity to SP:P32731; match to protein family HMM PF02033; match to protein family HMM TIGR00082; ribosome-binding factor A 104435..104842 Hyphomonas neptunium ATCC 15444 4290054 YP_758850.1 CDS HNE_0116 NC_008358.1 105005 105562 D hypothetical protein 105005..105562 Hyphomonas neptunium ATCC 15444 4290475 YP_758851.1 CDS truB NC_008358.1 105695 106636 D identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 105695..106636 Hyphomonas neptunium ATCC 15444 4290191 YP_758852.1 CDS HNE_0118 NC_008358.1 106637 106873 R hypothetical protein complement(106637..106873) Hyphomonas neptunium ATCC 15444 4287342 YP_758853.1 CDS HNE_0119 NC_008358.1 107521 108228 R putative lipoprotein complement(107521..108228) Hyphomonas neptunium ATCC 15444 4287888 YP_758854.1 CDS msrB1 NC_008358.1 108400 108900 D identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase 108400..108900 Hyphomonas neptunium ATCC 15444 4288992 YP_758855.1 CDS HNE_0121 NC_008358.1 108966 109358 R identified by similarity to GB:AAQ62364.1; hypothetical protein complement(108966..109358) Hyphomonas neptunium ATCC 15444 4287218 YP_758856.1 CDS HNE_0122 NC_008358.1 109355 109690 R identified by similarity to GB:AAQ62365.1; hypothetical protein complement(109355..109690) Hyphomonas neptunium ATCC 15444 4287895 YP_758857.1 CDS HNE_0123 NC_008358.1 109703 110338 R identified by similarity to GB:AAG10465.1; hypothetical protein complement(109703..110338) Hyphomonas neptunium ATCC 15444 4289226 YP_758858.1 CDS HNE_0124 NC_008358.1 110388 110759 R hypothetical protein complement(110388..110759) Hyphomonas neptunium ATCC 15444 4289727 YP_758859.1 CDS bdhA NC_008358.1 110804 111586 R identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963; 3-hydroxybutyrate dehydrogenase complement(110804..111586) Hyphomonas neptunium ATCC 15444 4288478 YP_758860.1 CDS HNE_0126 NC_008358.1 111682 112116 D identified by match to protein family HMM PF03994; hypothetical protein 111682..112116 Hyphomonas neptunium ATCC 15444 4288192 YP_758861.1 CDS HNE_0127 NC_008358.1 112243 112947 D hypothetical protein 112243..112947 Hyphomonas neptunium ATCC 15444 4289336 YP_758862.1 CDS pyrF NC_008358.1 112944 113813 D identified by match to protein family HMM PF00215; match to protein family HMM TIGR02127; orotidine 5'-phosphate decarboxylase 112944..113813 Hyphomonas neptunium ATCC 15444 4290118 YP_758863.1 CDS adhA NC_008358.1 113966 116119 D identified by similarity to SP:P28036; match to protein family HMM PF00034; match to protein family HMM PF01011; alcohol dehydrogenase (acceptor) 113966..116119 Hyphomonas neptunium ATCC 15444 4287350 YP_758864.1 CDS HNE_0130 NC_008358.1 116258 116797 D hypothetical protein 116258..116797 Hyphomonas neptunium ATCC 15444 4288610 YP_758865.1 CDS HNE_0131 NC_008358.1 116868 117692 D hypothetical protein 116868..117692 Hyphomonas neptunium ATCC 15444 4287637 YP_758866.1 CDS HNE_0132 NC_008358.1 117676 118368 R identified by match to protein family HMM PF02798; glutathione S-transferase complement(117676..118368) Hyphomonas neptunium ATCC 15444 4290464 YP_758867.1 CDS HNE_0133 NC_008358.1 118365 118661 R identified by match to protein family HMM PF03795; hypothetical protein complement(118365..118661) Hyphomonas neptunium ATCC 15444 4289700 YP_758868.1 CDS HNE_0134 NC_008358.1 118811 119518 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 118811..119518 Hyphomonas neptunium ATCC 15444 4287851 YP_758869.1 CDS HNE_0135 NC_008358.1 119583 119732 D hypothetical protein 119583..119732 Hyphomonas neptunium ATCC 15444 4287725 YP_758870.1 CDS gcp NC_008358.1 119883 120980 R identified by match to protein family HMM PF00814; match to protein family HMM TIGR00329; O-sialoglycoprotein endopeptidase complement(119883..120980) Hyphomonas neptunium ATCC 15444 4289633 YP_758871.1 CDS HNE_0137 NC_008358.1 121016 121756 R identified by match to protein family HMM PF04264; hypothetical protein complement(121016..121756) Hyphomonas neptunium ATCC 15444 4289843 YP_758872.1 CDS HNE_0138 NC_008358.1 122241 122672 D identified by similarity to PIR:AI2479; hypothetical protein 122241..122672 Hyphomonas neptunium ATCC 15444 4287318 YP_758873.1 CDS lepA NC_008358.1 122692 124506 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(122692..124506) Hyphomonas neptunium ATCC 15444 4288718 YP_758874.1 CDS HNE_0140 NC_008358.1 124623 125474 D hypothetical protein 124623..125474 Hyphomonas neptunium ATCC 15444 4289227 YP_758875.1 CDS HNE_0141 NC_008358.1 125443 126273 D hypothetical protein 125443..126273 Hyphomonas neptunium ATCC 15444 4287228 YP_758876.1 CDS HNE_0142 NC_008358.1 126362 126937 D putative lipoprotein 126362..126937 Hyphomonas neptunium ATCC 15444 4288803 YP_758877.1 CDS HNE_0143 NC_008358.1 126950 128047 D identified by match to protein family HMM PF00355; Rieske 2Fe-2S family protein 126950..128047 Hyphomonas neptunium ATCC 15444 4290312 YP_758878.1 CDS HNE_0144 NC_008358.1 128185 128769 D identified by match to protein family HMM PF02469; fasciclin domain-containing protein 128185..128769 Hyphomonas neptunium ATCC 15444 4289030 YP_758879.1 CDS ruvC NC_008358.1 128909 129412 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 128909..129412 Hyphomonas neptunium ATCC 15444 4290117 YP_758880.1 CDS ruvA NC_008358.1 129409 130032 D identified by similarity to SP:Q51425; match to protein family HMM PF01330; match to protein family HMM PF07499; Holliday junction DNA helicase RuvA 129409..130032 Hyphomonas neptunium ATCC 15444 4287575 YP_758881.1 CDS ruvB NC_008358.1 130029 131063 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 130029..131063 Hyphomonas neptunium ATCC 15444 4290358 YP_758882.1 CDS HNE_0148 NC_008358.1 131064 131462 R identified by similarity to GB:AAK23005.1; hypothetical protein complement(131064..131462) Hyphomonas neptunium ATCC 15444 4289110 YP_758883.1 CDS HNE_0149 NC_008358.1 131539 132684 D hypothetical protein 131539..132684 Hyphomonas neptunium ATCC 15444 4288637 YP_758884.1 CDS HNE_0150 NC_008358.1 132681 133136 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; thioesterase family protein 132681..133136 Hyphomonas neptunium ATCC 15444 4287308 YP_758885.1 CDS tolQ NC_008358.1 133454 134164 D identified by similarity to SP:P05828; match to protein family HMM PF01618; protein TolQ 133454..134164 Hyphomonas neptunium ATCC 15444 4289095 YP_758886.1 CDS HNE_0152 NC_008358.1 134177 134626 D identified by match to protein family HMM PF02472; ExbD/TolR family transport energizing protein 134177..134626 Hyphomonas neptunium ATCC 15444 4289790 YP_758887.1 CDS HNE_0153 NC_008358.1 134652 135575 D identified by similarity to PIR:H98270; hypothetical protein 134652..135575 Hyphomonas neptunium ATCC 15444 4287417 YP_758888.1 CDS tolB NC_008358.1 135616 136971 D identified by similarity to SP:Q93TG4; match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800; tolB protein 135616..136971 Hyphomonas neptunium ATCC 15444 4290508 YP_758889.1 CDS HNE_0155 NC_008358.1 137204 137746 D identified by match to protein family HMM PF00691; match to protein family HMM TIGR02802; OmpA family protein 137204..137746 Hyphomonas neptunium ATCC 15444 4288784 YP_758890.1 CDS HNE_0156 NC_008358.1 137861 138817 D identified by similarity to GB:AAK25190.1; match to protein family HMM TIGR02795; hypothetical protein 137861..138817 Hyphomonas neptunium ATCC 15444 4290476 YP_758891.1 CDS tilS NC_008358.1 138805 139908 D identified by match to protein family HMM PF01171; match to protein family HMM TIGR02432; tRNA(Ile)-lysidine synthetase 138805..139908 Hyphomonas neptunium ATCC 15444 4289554 YP_758892.1 CDS ftsH NC_008358.1 139957 141876 D identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; ATP-dependent metalloprotease FtsH 139957..141876 Hyphomonas neptunium ATCC 15444 4289404 YP_758893.1 CDS HNE_0159 NC_008358.1 141950 142606 D identified by similarity to GB:AAM42303.1; hypothetical protein 141950..142606 Hyphomonas neptunium ATCC 15444 4289389 YP_758894.1 CDS HNE_0160 NC_008358.1 142647 142976 D hypothetical protein 142647..142976 Hyphomonas neptunium ATCC 15444 4287138 YP_758895.1 CDS HNE_0161 NC_008358.1 143079 143837 D identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 143079..143837 Hyphomonas neptunium ATCC 15444 4287459 YP_758896.1 CDS HNE_0162 NC_008358.1 143838 145013 R identified by match to protein family HMM PF02515; L-carnitine dehydratase complement(143838..145013) Hyphomonas neptunium ATCC 15444 4288947 YP_758897.1 CDS HNE_0163 NC_008358.1 145081 146508 R identified by similarity to SP:P73436; match to protein family HMM PF02696; hypothetical protein complement(145081..146508) Hyphomonas neptunium ATCC 15444 4287095 YP_758898.1 CDS HNE_0164 NC_008358.1 146696 149584 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 146696..149584 Hyphomonas neptunium ATCC 15444 4289807 YP_758899.1 CDS HNE_0165 NC_008358.1 149724 152084 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; tonB dependent receptor complement(149724..152084) Hyphomonas neptunium ATCC 15444 4289637 YP_758900.1 CDS HNE_0166 NC_008358.1 152262 153218 R identified by match to protein family HMM PF07859; GDXG family lipase complement(152262..153218) Hyphomonas neptunium ATCC 15444 4289898 YP_758901.1 CDS fcs1 NC_008358.1 153300 155153 R identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501; acyl-CoA synthetase complement(153300..155153) Hyphomonas neptunium ATCC 15444 4288083 YP_758902.1 CDS glmM NC_008358.1 155246 156595 R identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455; phosphoglucosamine mutase complement(155246..156595) Hyphomonas neptunium ATCC 15444 4288983 YP_758903.1 CDS cysQ NC_008358.1 156619 157407 R identified by match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase complement(156619..157407) Hyphomonas neptunium ATCC 15444 4290040 YP_758904.1 CDS HNE_0170 NC_008358.1 157423 158319 R identified by similarity to SP:O08437; similarity to SP:P39311; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase complement(157423..158319) Hyphomonas neptunium ATCC 15444 4287068 YP_758905.1 CDS ilvA NC_008358.1 158401 159627 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(158401..159627) Hyphomonas neptunium ATCC 15444 4287908 YP_758906.1 CDS HNE_0172 NC_008358.1 159673 161544 R identified by similarity to SP:P75796; match to protein family HMM PF00005; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein complement(159673..161544) Hyphomonas neptunium ATCC 15444 4288322 YP_758907.1 CDS HNE_0173 NC_008358.1 161673 162353 R identified by similarity to SP:P17266; match to protein family HMM PF03922; putative outer membrane protein OmpW complement(161673..162353) Hyphomonas neptunium ATCC 15444 4288752 YP_758908.1 CDS gbd NC_008358.1 162628 163761 D identified by similarity to GB:AAC41425.1; match to protein family HMM PF00465; 4-hydroxybutyrate dehydrogenase 162628..163761 Hyphomonas neptunium ATCC 15444 4288945 YP_758909.1 CDS HNE_0175 NC_008358.1 163771 164445 D identified by similarity to GB:AAV94429.1; hypothetical protein 163771..164445 Hyphomonas neptunium ATCC 15444 4289704 YP_758910.1 CDS HNE_0176 NC_008358.1 164452 165510 R identified by similarity to SP:P42094; match to protein family HMM PF02333; 3-phytase complement(164452..165510) Hyphomonas neptunium ATCC 15444 4289819 YP_758911.1 CDS HNE_0177 NC_008358.1 165592 166470 R identified by match to protein family HMM PF05235; CHAD domain-containing protein complement(165592..166470) Hyphomonas neptunium ATCC 15444 4287874 YP_758912.1 CDS HNE_0178 NC_008358.1 166626 167048 D hypothetical protein 166626..167048 Hyphomonas neptunium ATCC 15444 4287992 YP_758913.1 CDS HNE_0179 NC_008358.1 167045 167428 R hypothetical protein complement(167045..167428) Hyphomonas neptunium ATCC 15444 4289029 YP_758914.1 CDS phaZ NC_008358.1 167642 168940 D identified by similarity to GB:BAA33394.1; match to protein family HMM PF06850; match to protein family HMM TIGR01849; polyhydroxyalkanoate depolymerase 167642..168940 Hyphomonas neptunium ATCC 15444 4287480 YP_758915.1 CDS HNE_0181 NC_008358.1 168947 170020 R identified by similarity to SP:P37887; match to protein family HMM PF00291; cysteine synthase/cystathionine beta-synthase family protein complement(168947..170020) Hyphomonas neptunium ATCC 15444 4290411 YP_758916.1 CDS HNE_0182 NC_008358.1 170081 170575 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 170081..170575 Hyphomonas neptunium ATCC 15444 4289759 YP_758917.1 CDS HNE_0183 NC_008358.1 170572 171423 R hypothetical protein complement(170572..171423) Hyphomonas neptunium ATCC 15444 4287686 YP_758918.1 CDS HNE_0184 NC_008358.1 171493 172302 R identified by similarity to SP:P24198; match to protein family HMM PF02535; zinc/iron ABC transporter permease complement(171493..172302) Hyphomonas neptunium ATCC 15444 4288971 YP_758919.1 CDS HNE_0185 NC_008358.1 172494 173138 D putative lipoprotein 172494..173138 Hyphomonas neptunium ATCC 15444 4288094 YP_758920.1 CDS HNE_0186 NC_008358.1 173147 173842 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 173147..173842 Hyphomonas neptunium ATCC 15444 4288344 YP_758921.1 CDS HNE_0187 NC_008358.1 173839 175107 D identified by match to protein family HMM PF02687; ABC transporter permease 173839..175107 Hyphomonas neptunium ATCC 15444 4288871 YP_758922.1 CDS HNE_0188 NC_008358.1 175156 175881 D putative lipoprotein 175156..175881 Hyphomonas neptunium ATCC 15444 4290532 YP_758923.1 CDS HNE_0189 NC_008358.1 175881 176516 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 175881..176516 Hyphomonas neptunium ATCC 15444 4290059 YP_758924.1 CDS mscL NC_008358.1 176661 177074 R homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel complement(176661..177074) Hyphomonas neptunium ATCC 15444 4290379 YP_758925.1 CDS ihfB NC_008358.1 177183 177482 R identified by similarity to SP:Q06607; match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta complement(177183..177482) Hyphomonas neptunium ATCC 15444 4288485 YP_758926.1 CDS rpsA NC_008358.1 177598 179577 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(177598..179577) Hyphomonas neptunium ATCC 15444 4287133 YP_758927.1 CDS cmk NC_008358.1 179719 180357 R identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase complement(179719..180357) Hyphomonas neptunium ATCC 15444 4289853 YP_758928.1 CDS HNE_0194 NC_008358.1 180418 181509 R identified by match to protein family HMM PF00724; NADH:flavin oxidoreductase/NADH oxidase family protein complement(180418..181509) Hyphomonas neptunium ATCC 15444 4289188 YP_758929.1 CDS aroA NC_008358.1 181563 182882 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(181563..182882) Hyphomonas neptunium ATCC 15444 4287507 YP_758930.1 CDS HNE_0196 NC_008358.1 183012 183530 D identified by similarity to GB:AAK25552.1; match to protein family HMM TIGR02300; hypothetical protein 183012..183530 Hyphomonas neptunium ATCC 15444 4288015 YP_758931.1 CDS HNE_0198 NC_008358.1 184001 184240 D identified by similarity to GB:AAK25555.1; hypothetical protein 184001..184240 Hyphomonas neptunium ATCC 15444 4290335 YP_758932.1 CDS HNE_0199 NC_008358.1 184343 185590 D putative lipoprotein 184343..185590 Hyphomonas neptunium ATCC 15444 4290264 YP_758933.1 CDS HNE_0200 NC_008358.1 185603 186637 D identified by similarity to GB:AAN55945.1; putative lipoprotein 185603..186637 Hyphomonas neptunium ATCC 15444 4288595 YP_758934.1 CDS HNE_0201 NC_008358.1 186634 187098 D identified by match to protein family HMM PF02639; YaiI/YqxD family protein 186634..187098 Hyphomonas neptunium ATCC 15444 4288936 YP_758935.1 CDS HNE_0202 NC_008358.1 187145 187759 D identified by match to protein family HMM PF01612; putative exonuclease 187145..187759 Hyphomonas neptunium ATCC 15444 4290534 YP_758936.1 CDS HNE_0203 NC_008358.1 187861 188538 D identified by similarity to GB:AAK25564.1; hypothetical protein 187861..188538 Hyphomonas neptunium ATCC 15444 4287467 YP_758937.1 CDS HNE_0204 NC_008358.1 188525 189061 D identified by match to protein family HMM PF03968; OstA family protein 188525..189061 Hyphomonas neptunium ATCC 15444 4287565 YP_758938.1 CDS HNE_0205 NC_008358.1 189155 189889 D identified by similarity to GB:AAK25562.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein 189155..189889 Hyphomonas neptunium ATCC 15444 4288480 YP_758939.1 CDS rpoN NC_008358.1 189908 191407 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 189908..191407 Hyphomonas neptunium ATCC 15444 4289285 YP_758940.1 CDS rbsK NC_008358.1 192246 193088 R identified by similarity to SP:P36945; match to protein family HMM PF00294; ribokinase complement(192246..193088) Hyphomonas neptunium ATCC 15444 4290175 YP_758941.1 CDS HNE_0208 NC_008358.1 193085 194017 R identified by match to protein family HMM PF01156; inosine-uridine preferring nucleoside hydrolase family protein complement(193085..194017) Hyphomonas neptunium ATCC 15444 4288229 YP_758942.1 CDS HNE_0209 NC_008358.1 194014 194538 R identified by similarity to GB:CAE78626.1; hypothetical protein complement(194014..194538) Hyphomonas neptunium ATCC 15444 4287142 YP_758943.1 CDS HNE_0210 NC_008358.1 194479 194580 D hypothetical protein 194479..194580 Hyphomonas neptunium ATCC 15444 4290431 YP_758944.1 CDS HNE_0211 NC_008358.1 194675 197803 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein complement(194675..197803) Hyphomonas neptunium ATCC 15444 4289244 YP_758945.1 CDS HNE_0212 NC_008358.1 197808 198953 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(197808..198953) Hyphomonas neptunium ATCC 15444 4290545 YP_758946.1 CDS HNE_0213 NC_008358.1 198963 200402 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein complement(198963..200402) Hyphomonas neptunium ATCC 15444 4290132 YP_758947.1 CDS HNE_0214 NC_008358.1 200728 202539 D the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter 200728..202539 Hyphomonas neptunium ATCC 15444 4289021 YP_758948.1 CDS HNE_0215 NC_008358.1 202748 205615 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782; TonB-dependent receptor 202748..205615 Hyphomonas neptunium ATCC 15444 4289248 YP_758949.1 CDS HNE_0216 NC_008358.1 205566 206969 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 205566..206969 Hyphomonas neptunium ATCC 15444 4289268 YP_758950.1 CDS HNE_0217 NC_008358.1 207039 207809 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NAD-dependent epimerase/dehydratase family protein complement(207039..207809) Hyphomonas neptunium ATCC 15444 4289028 YP_758951.1 CDS HNE_0218 NC_008358.1 208103 208618 D identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 208103..208618 Hyphomonas neptunium ATCC 15444 4289629 YP_758952.1 CDS HNE_0219 NC_008358.1 208653 209687 D identified by match to protein family HMM PF04773; sigma factor regulatory protein FecR/PupR family 208653..209687 Hyphomonas neptunium ATCC 15444 4289266 YP_758953.1 CDS HNE_0220 NC_008358.1 209986 212790 D identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 209986..212790 Hyphomonas neptunium ATCC 15444 4287455 YP_758954.1 CDS HNE_0221 NC_008358.1 212878 215022 D identified by match to protein family HMM PF01804; penicillin amidase 212878..215022 Hyphomonas neptunium ATCC 15444 4287972 YP_758955.1 CDS HNE_0222 NC_008358.1 215044 216600 D identified by match to protein family HMM PF01839; FG-GAP repeat-containing protein 215044..216600 Hyphomonas neptunium ATCC 15444 4288106 YP_758956.1 CDS HNE_0223 NC_008358.1 216654 217025 R putative lipoprotein complement(216654..217025) Hyphomonas neptunium ATCC 15444 4288894 YP_758957.1 CDS HNE_0225 NC_008358.1 217294 218400 D identified by match to protein family HMM PF07446; GumN family protein 217294..218400 Hyphomonas neptunium ATCC 15444 4287087 YP_758958.1 CDS HNE_0226 NC_008358.1 218407 219219 R identified by match to protein family HMM PF00459; inositol monophosphatase family protein complement(218407..219219) Hyphomonas neptunium ATCC 15444 4287635 YP_758959.1 CDS HNE_0227 NC_008358.1 219252 219650 R identified by match to protein family HMM PF01381; DNA-binding protein complement(219252..219650) Hyphomonas neptunium ATCC 15444 4287869 YP_758960.1 CDS HNE_0228 NC_008358.1 219923 220747 R identified by match to protein family HMM PF05013; putative N-formylglutamate amidohydrolase complement(219923..220747) Hyphomonas neptunium ATCC 15444 4287437 YP_758961.1 CDS HNE_0229 NC_008358.1 220976 221335 D identified by match to protein family HMM PF00072; response regulator 220976..221335 Hyphomonas neptunium ATCC 15444 4289356 YP_758962.1 CDS HNE_0230 NC_008358.1 221337 222569 R identified by match to protein family HMM PF01266; match to protein family HMM PF01593; amine oxidase, flavin-containing complement(221337..222569) Hyphomonas neptunium ATCC 15444 4287914 YP_758963.1 CDS HNE_0231 NC_008358.1 222656 223147 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; rrf2 family protein 222656..223147 Hyphomonas neptunium ATCC 15444 4287852 YP_758964.1 CDS HNE_0233 NC_008358.1 223445 224167 D hypothetical protein 223445..224167 Hyphomonas neptunium ATCC 15444 4287973 YP_758965.1 CDS HNE_0234 NC_008358.1 224341 225540 D hypothetical protein 224341..225540 Hyphomonas neptunium ATCC 15444 4288884 YP_758966.1 CDS HNE_0235 NC_008358.1 225537 226487 D hypothetical protein 225537..226487 Hyphomonas neptunium ATCC 15444 4288530 YP_758967.1 CDS HNE_0236 NC_008358.1 226492 228057 D hypothetical protein 226492..228057 Hyphomonas neptunium ATCC 15444 4289623 YP_758968.1 CDS HNE_0237 NC_008358.1 228064 229284 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(228064..229284) Hyphomonas neptunium ATCC 15444 4288719 YP_758969.1 CDS HNE_0238 NC_008358.1 229281 230204 R identified by similarity to GB:AAK24540.1; hypothetical protein complement(229281..230204) Hyphomonas neptunium ATCC 15444 4289392 YP_758970.1 CDS HNE_0239 NC_008358.1 230349 230972 R identified by similarity to GB:AAS95392.1; hypothetical protein complement(230349..230972) Hyphomonas neptunium ATCC 15444 4287730 YP_758971.1 CDS HNE_0240 NC_008358.1 230991 231479 R hypothetical protein complement(230991..231479) Hyphomonas neptunium ATCC 15444 4287872 YP_758972.1 CDS fliL NC_008358.1 231484 231999 R flagellar basal body-associated protein FliL complement(231484..231999) Hyphomonas neptunium ATCC 15444 4287916 YP_758973.1 CDS fliF NC_008358.1 232128 233714 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 232128..233714 Hyphomonas neptunium ATCC 15444 4288187 YP_758974.1 CDS HNE_0243 NC_008358.1 233707 234318 D hypothetical protein 233707..234318 Hyphomonas neptunium ATCC 15444 4288084 YP_758975.1 CDS HNE_0244 NC_008358.1 234339 234638 D identified by match to protein family HMM PF01052; putative flagellar motor switch protein FliN 234339..234638 Hyphomonas neptunium ATCC 15444 4287566 YP_758976.1 CDS fliP NC_008358.1 234635 235393 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 234635..235393 Hyphomonas neptunium ATCC 15444 4289161 YP_758977.1 CDS HNE_0246 NC_008358.1 235390 236484 D identified by match to protein family HMM PF01706; putative flagellar motor switch protein 235390..236484 Hyphomonas neptunium ATCC 15444 4290215 YP_758978.1 CDS flgI NC_008358.1 236556 237665 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(236556..237665) Hyphomonas neptunium ATCC 15444 4288575 YP_758979.1 CDS HNE_0248 NC_008358.1 237670 238647 R putative flagellar hook-associated protein FlgL complement(237670..238647) Hyphomonas neptunium ATCC 15444 4287694 YP_758980.1 CDS flgK NC_008358.1 238653 240104 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(238653..240104) Hyphomonas neptunium ATCC 15444 4289732 YP_758981.1 CDS flgE NC_008358.1 240131 241435 R identified by similarity to SP:P35806; match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar hook protein FlgE complement(240131..241435) Hyphomonas neptunium ATCC 15444 4288536 YP_758982.1 CDS HNE_0251 NC_008358.1 241554 242417 R identified by similarity to SP:P09349; match to protein family HMM PF00691; putative chemotaxis MotB protein complement(241554..242417) Hyphomonas neptunium ATCC 15444 4289209 YP_758983.1 CDS HNE_0252 NC_008358.1 242730 243470 D identified by similarity to GB:BAB49920.1; match to protein family HMM PF01052; SPOA family protein 242730..243470 Hyphomonas neptunium ATCC 15444 4289496 YP_758984.1 CDS HNE_0253 NC_008358.1 243541 244407 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 243541..244407 Hyphomonas neptunium ATCC 15444 4287163 YP_758985.1 CDS HNE_0254 NC_008358.1 244404 246167 D hypothetical protein 244404..246167 Hyphomonas neptunium ATCC 15444 4287649 YP_758986.1 CDS flgF NC_008358.1 246167 246883 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Rhodobacter sphaeroides has 2 copies of this and other flagella genes; flagellar basal body rod protein FlgF 246167..246883 Hyphomonas neptunium ATCC 15444 4290088 YP_758987.1 CDS flgG NC_008358.1 246912 247697 D makes up the distal portion of the flagellar basal body rod; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagella; flagellar basal body rod protein FlgG 246912..247697 Hyphomonas neptunium ATCC 15444 4288403 YP_758988.1 CDS flgA NC_008358.1 247702 248109 D identified by match to protein family HMM PF03240; flagellar basal body P-ring formation protein FlgA 247702..248109 Hyphomonas neptunium ATCC 15444 4287376 YP_758989.1 CDS flgH NC_008358.1 248091 248810 D identified by match to protein family HMM PF02107; flagellar L-ring protein FlgH 248091..248810 Hyphomonas neptunium ATCC 15444 4289269 YP_758990.1 CDS HNE_0259 NC_008358.1 248877 249386 D hypothetical protein 248877..249386 Hyphomonas neptunium ATCC 15444 4287953 YP_758991.1 CDS HNE_0260 NC_008358.1 249425 250075 R identified by similarity to SP:P16321; match to protein family HMM PF03963; putative basal-body rod modification protein FlgD complement(249425..250075) Hyphomonas neptunium ATCC 15444 4289015 YP_758992.1 CDS HNE_0261 NC_008358.1 250085 251419 R identified by similarity to GB:AAC33327.1; match to protein family HMM PF02120; flagellar hook-length control protein complement(250085..251419) Hyphomonas neptunium ATCC 15444 4287786 YP_758993.1 CDS HNE_0262 NC_008358.1 251534 251860 D hypothetical protein 251534..251860 Hyphomonas neptunium ATCC 15444 4288046 YP_758994.1 CDS HNE_0263 NC_008358.1 251857 252240 D hypothetical protein 251857..252240 Hyphomonas neptunium ATCC 15444 4290485 YP_758995.1 CDS HNE_0264 NC_008358.1 252387 253634 D identified by match to protein family HMM PF00669; match to protein family HMM PF00700; flagellin Laf1 252387..253634 Hyphomonas neptunium ATCC 15444 4288929 YP_758996.1 CDS HNE_0265 NC_008358.1 253746 254132 D putative flagellar biosynthesis regulatory protein 253746..254132 Hyphomonas neptunium ATCC 15444 4290500 YP_758997.1 CDS flbT NC_008358.1 254132 254557 D post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 254132..254557 Hyphomonas neptunium ATCC 15444 4289630 YP_758998.1 CDS HNE_0267 NC_008358.1 254559 255407 D putative flagellar protein 254559..255407 Hyphomonas neptunium ATCC 15444 4287944 YP_758999.1 CDS fliI NC_008358.1 255414 256802 R identified by match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR02545; flagellar protein export ATPase FliI complement(255414..256802) Hyphomonas neptunium ATCC 15444 4289201 YP_759000.1 CDS flgB NC_008358.1 256887 257258 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgB 256887..257258 Hyphomonas neptunium ATCC 15444 4287997 YP_759001.1 CDS HNE_0270 NC_008358.1 257273 257659 D identified by match to protein family HMM PF00460; match to protein family HMM PF06429; flagellar basal-body rod protein 257273..257659 Hyphomonas neptunium ATCC 15444 4287341 YP_759002.1 CDS fliE NC_008358.1 257672 257971 D flagellar hook-basal body complex protein FliE 257672..257971 Hyphomonas neptunium ATCC 15444 4289804 YP_759003.1 CDS fliQ NC_008358.1 257990 258253 D identified by similarity to SP:P33134; match to protein family HMM PF01313; flagellar biosynthetic protein fliQ 257990..258253 Hyphomonas neptunium ATCC 15444 4289565 YP_759004.1 CDS flhA NC_008358.1 258263 260341 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 258263..260341 Hyphomonas neptunium ATCC 15444 4288316 YP_759005.1 CDS HNE_0274 NC_008358.1 260383 261096 D identified by similarity to SP:Q45975; flagellar biosynthetic protein FliR 260383..261096 Hyphomonas neptunium ATCC 15444 4290112 YP_759006.1 CDS HNE_0275 NC_008358.1 261106 262179 D identified by match to protein family HMM PF01312; FlhB/HrpN/YscU/SpaS family protein 261106..262179 Hyphomonas neptunium ATCC 15444 4288696 YP_759007.1 CDS HNE_0276 NC_008358.1 262176 262511 D hypothetical protein 262176..262511 Hyphomonas neptunium ATCC 15444 4290304 YP_759008.1 CDS HNE_0277 NC_008358.1 262559 263398 R hypothetical protein complement(262559..263398) Hyphomonas neptunium ATCC 15444 4289309 YP_759009.1 CDS HNE_0278 NC_008358.1 263458 264630 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 263458..264630 Hyphomonas neptunium ATCC 15444 4287343 YP_759010.1 CDS HNE_0279 NC_008358.1 264638 266413 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase complement(264638..266413) Hyphomonas neptunium ATCC 15444 4287203 YP_759011.1 CDS HNE_0280 NC_008358.1 266410 266973 R identified by match to protein family HMM PF01590; GAF domain-containing protein complement(266410..266973) Hyphomonas neptunium ATCC 15444 4289339 YP_759012.1 CDS HNE_0281 NC_008358.1 267448 268089 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor complement(267448..268089) Hyphomonas neptunium ATCC 15444 4288386 YP_759013.1 CDS HNE_0283 NC_008358.1 270096 270533 R hypothetical protein complement(270096..270533) Hyphomonas neptunium ATCC 15444 4288892 YP_759014.1 CDS HNE_0284 NC_008358.1 271099 273480 R identified by similarity to SP:P55386; hypothetical protein complement(271099..273480) Hyphomonas neptunium ATCC 15444 4288631 YP_759015.1 CDS HNE_0285 NC_008358.1 273437 275680 R identified by similarity to GB:AAM71921.1; hypothetical protein complement(273437..275680) Hyphomonas neptunium ATCC 15444 4289937 YP_759016.1 CDS HNE_0286 NC_008358.1 277020 278174 R identified by match to protein family HMM PF01381; match to protein family HMM PF06114; DNA-binding protein complement(277020..278174) Hyphomonas neptunium ATCC 15444 4290254 YP_759017.1 CDS HNE_0287 NC_008358.1 278171 279541 R identified by similarity to GB:CAI07457.1; hypothetical protein complement(278171..279541) Hyphomonas neptunium ATCC 15444 4288298 YP_759018.1 CDS HNE_0288 NC_008358.1 279534 280094 R hypothetical protein complement(279534..280094) Hyphomonas neptunium ATCC 15444 4287594 YP_759019.1 CDS HNE_0289 NC_008358.1 280516 281541 D hypothetical protein 280516..281541 Hyphomonas neptunium ATCC 15444 4287074 YP_759020.1 CDS HNE_0290 NC_008358.1 281535 282287 D identified by similarity to GB:CAD63078.1; hypothetical protein 281535..282287 Hyphomonas neptunium ATCC 15444 4290246 YP_759021.1 CDS HNE_0291 NC_008358.1 282297 282572 D identified by similarity to GB:AAN69291.1; hypothetical protein 282297..282572 Hyphomonas neptunium ATCC 15444 4288932 YP_759022.1 CDS HNE_0292 NC_008358.1 282583 283644 R identified by match to protein family HMM PF00589; phage integrase family site specific recombinase complement(282583..283644) Hyphomonas neptunium ATCC 15444 4288305 YP_759023.1 CDS dusA NC_008358.1 283755 284741 D identified by similarity to SP:P32695; match to protein family HMM PF01207; match to protein family HMM TIGR00742; tRNA-dihydrouridine synthase A 283755..284741 Hyphomonas neptunium ATCC 15444 4288047 YP_759024.1 CDS HNE_0294 NC_008358.1 284928 286418 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 284928..286418 Hyphomonas neptunium ATCC 15444 4290044 YP_759025.1 CDS HNE_0295 NC_008358.1 286415 288151 D identified by similarity to SP:P36670; putative muropeptide permease AmpG 286415..288151 Hyphomonas neptunium ATCC 15444 4288191 YP_759026.1 CDS maeB NC_008358.1 288170 290437 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(288170..290437) Hyphomonas neptunium ATCC 15444 4288085 YP_759027.1 CDS mutS NC_008358.1 290586 293258 D identified by similarity to SP:P10339; match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein MutS 290586..293258 Hyphomonas neptunium ATCC 15444 4290061 YP_759028.1 CDS HNE_0298 NC_008358.1 293255 293941 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(293255..293941) Hyphomonas neptunium ATCC 15444 4287461 YP_759029.1 CDS HNE_0299 NC_008358.1 294162 295220 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 294162..295220 Hyphomonas neptunium ATCC 15444 4287198 YP_759030.1 CDS HNE_0300 NC_008358.1 295227 295631 R putative lipoprotein complement(295227..295631) Hyphomonas neptunium ATCC 15444 4290413 YP_759031.1 CDS gshB NC_008358.1 295659 296609 R catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase complement(295659..296609) Hyphomonas neptunium ATCC 15444 4288419 YP_759032.1 CDS HNE_0302 NC_008358.1 296677 297396 R identified by match to protein family HMM PF04972; phospholipid-binding protein complement(296677..297396) Hyphomonas neptunium ATCC 15444 4287606 YP_759033.1 CDS HNE_0303 NC_008358.1 297745 297987 D identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 297745..297987 Hyphomonas neptunium ATCC 15444 4287556 YP_759034.1 CDS HNE_0304 NC_008358.1 297992 298456 D identified by similarity to GB:CAE25611.1; match to protein family HMM PF02590; hypothetical protein 297992..298456 Hyphomonas neptunium ATCC 15444 4287210 YP_759035.1 CDS HNE_0305 NC_008358.1 298538 299851 D TRAP transporter solute receptor TAXI family protein 298538..299851 Hyphomonas neptunium ATCC 15444 4289527 YP_759036.1 CDS HNE_0306 NC_008358.1 299869 300744 R identified by match to protein family HMM PF04397; LytTr DNA-binding domain-containing protein complement(299869..300744) Hyphomonas neptunium ATCC 15444 4287813 YP_759037.1 CDS HNE_0307 NC_008358.1 300955 301350 D hypothetical protein 300955..301350 Hyphomonas neptunium ATCC 15444 4288786 YP_759038.1 CDS HNE_0308 NC_008358.1 301420 302646 D alkaline phosphatase-like protein 301420..302646 Hyphomonas neptunium ATCC 15444 4288781 YP_759039.1 CDS HNE_0309 NC_008358.1 302686 303930 D identified by match to protein family HMM PF07690; major facilitator family transporter 302686..303930 Hyphomonas neptunium ATCC 15444 4290494 YP_759040.1 CDS sucC NC_008358.1 304074 305267 D identified by similarity to SP:P80886; match to protein family HMM PF00549; match to protein family HMM PF02222; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 304074..305267 Hyphomonas neptunium ATCC 15444 4288518 YP_759041.1 CDS sucD NC_008358.1 305272 306174 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 305272..306174 Hyphomonas neptunium ATCC 15444 4287111 YP_759042.1 CDS sucA NC_008358.1 306324 309332 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 306324..309332 Hyphomonas neptunium ATCC 15444 4289257 YP_759043.1 CDS sucB NC_008358.1 309362 310912 D identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01347; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 309362..310912 Hyphomonas neptunium ATCC 15444 4290163 YP_759044.1 CDS HNE_0314 NC_008358.1 310909 311622 R identified by similarity to GB:BAC88477.1; hypothetical protein complement(310909..311622) Hyphomonas neptunium ATCC 15444 4289174 YP_759045.1 CDS HNE_0315 NC_008358.1 311781 312653 D identified by match to protein family HMM PF02798; glutathione S-transferase 311781..312653 Hyphomonas neptunium ATCC 15444 4288108 YP_759046.1 CDS HNE_0316 NC_008358.1 312657 313634 D hypothetical protein 312657..313634 Hyphomonas neptunium ATCC 15444 4287615 YP_759047.1 CDS HNE_0317 NC_008358.1 313726 314070 D identified by match to protein family HMM PF01817; putative chorismate mutase, type II 313726..314070 Hyphomonas neptunium ATCC 15444 4289348 YP_759048.1 CDS HNE_0318 NC_008358.1 314031 314417 R hypothetical protein complement(314031..314417) Hyphomonas neptunium ATCC 15444 4288886 YP_759049.1 CDS HNE_0319 NC_008358.1 314588 314731 D hypothetical protein 314588..314731 Hyphomonas neptunium ATCC 15444 4288978 YP_759050.1 CDS HNE_0320 NC_008358.1 314814 316808 D hypothetical protein 314814..316808 Hyphomonas neptunium ATCC 15444 4288488 YP_759051.1 CDS HNE_0321 NC_008358.1 316818 317750 R identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(316818..317750) Hyphomonas neptunium ATCC 15444 4289854 YP_759052.1 CDS cysG NC_008358.1 317859 319310 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; match to protein family HMM TIGR01470; siroheme synthase 317859..319310 Hyphomonas neptunium ATCC 15444 4289004 YP_759053.1 CDS HNE_0323 NC_008358.1 319307 319630 D hypothetical protein 319307..319630 Hyphomonas neptunium ATCC 15444 4287969 YP_759054.1 CDS HNE_0324 NC_008358.1 319630 320253 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 319630..320253 Hyphomonas neptunium ATCC 15444 4288624 YP_759055.1 CDS HNE_0325 NC_008358.1 320253 321911 D identified by similarity to GB:AAC46385.1; match to protein family HMM PF01077; match to protein family HMM PF03460; putative sulfite reductase 320253..321911 Hyphomonas neptunium ATCC 15444 4290397 YP_759056.1 CDS HNE_0326 NC_008358.1 321898 322380 D identified by similarity to GB:AAU91667.1; match to protein family HMM PF06073; hypothetical protein 321898..322380 Hyphomonas neptunium ATCC 15444 4290230 YP_759057.1 CDS cysH NC_008358.1 322398 323132 D catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite; phosphoadenosine phosphosulfate reductase 322398..323132 Hyphomonas neptunium ATCC 15444 4290060 YP_759058.1 CDS HNE_0328 NC_008358.1 323239 324048 R identified by match to protein family HMM PF00588; RNA methyltransferase complement(323239..324048) Hyphomonas neptunium ATCC 15444 4289073 YP_759059.1 CDS HNE_0329 NC_008358.1 324079 324411 R identified by similarity to GB:AAU49484.1; hypothetical protein complement(324079..324411) Hyphomonas neptunium ATCC 15444 4289387 YP_759060.1 CDS rpoH NC_008358.1 324491 325387 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(324491..325387) Hyphomonas neptunium ATCC 15444 4287088 YP_759061.1 CDS HNE_0331 NC_008358.1 325779 326921 R identified by match to protein family HMM PF03969; AFG1 family ATPase complement(325779..326921) Hyphomonas neptunium ATCC 15444 4290374 YP_759062.1 CDS HNE_0332 NC_008358.1 326937 327551 R identified by match to protein family HMM PF01694; S54 family peptidase complement(326937..327551) Hyphomonas neptunium ATCC 15444 4287542 YP_759063.1 CDS HNE_0333 NC_008358.1 327659 328108 R identified by match to protein family HMM PF00072; response regulator receiver domain-containing protein complement(327659..328108) Hyphomonas neptunium ATCC 15444 4287547 YP_759064.1 CDS HNE_0334 NC_008358.1 328188 328322 D hypothetical protein 328188..328322 Hyphomonas neptunium ATCC 15444 4287221 YP_759065.1 CDS HNE_0335 NC_008358.1 328339 329244 D identified by match to protein family HMM PF01553; acyltransferase domain-containing protein 328339..329244 Hyphomonas neptunium ATCC 15444 4290479 YP_759066.1 CDS HNE_0336 NC_008358.1 329316 329807 D identified by match to protein family HMM PF00583; acetyltransferase 329316..329807 Hyphomonas neptunium ATCC 15444 4289549 YP_759067.1 CDS HNE_0337 NC_008358.1 329928 331277 D identified by similarity to SP:P36670; match to protein family HMM PF07690; peptide-acetyl-coenzyme A transporter (PAT) family protein 329928..331277 Hyphomonas neptunium ATCC 15444 4290322 YP_759068.1 CDS HNE_0338 NC_008358.1 331302 333341 R identified by similarity to GB:BAB49793.1; hypothetical protein complement(331302..333341) Hyphomonas neptunium ATCC 15444 4289634 YP_759069.1 CDS HNE_0339 NC_008358.1 333338 336214 R identified by match to protein family HMM TIGR02226; hypothetical protein complement(333338..336214) Hyphomonas neptunium ATCC 15444 4288872 YP_759070.1 CDS HNE_0340 NC_008358.1 336211 337077 R identified by similarity to PIR:C97630; hypothetical protein complement(336211..337077) Hyphomonas neptunium ATCC 15444 4289040 YP_759071.1 CDS HNE_0341 NC_008358.1 337074 337463 R putative lipoprotein complement(337074..337463) Hyphomonas neptunium ATCC 15444 4288243 YP_759072.1 CDS HNE_0342 NC_008358.1 337460 338458 R identified by match to protein family HMM PF07726; AAA ATPase complement(337460..338458) Hyphomonas neptunium ATCC 15444 4288528 YP_759073.1 CDS HNE_0343 NC_008358.1 338534 339121 D identified by similarity to PIR:AG3309; match to protein family HMM PF06938; hypothetical protein 338534..339121 Hyphomonas neptunium ATCC 15444 4288501 YP_759074.1 CDS HNE_0344 NC_008358.1 339131 339754 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 339131..339754 Hyphomonas neptunium ATCC 15444 4287448 YP_759075.1 CDS HNE_0345 NC_008358.1 339839 340189 D hypothetical protein 339839..340189 Hyphomonas neptunium ATCC 15444 4287103 YP_759076.1 CDS HNE_0346 NC_008358.1 340236 341381 D identified by match to protein family HMM PF01743; tRNA nucleotidyltransferase/poly(A) polymerase family protein 340236..341381 Hyphomonas neptunium ATCC 15444 4288593 YP_759077.1 CDS HNE_0347 NC_008358.1 341509 341733 D identified by match to protein family HMM PF04014; match to protein family HMM TIGR02609; putative addiction module antidote 341509..341733 Hyphomonas neptunium ATCC 15444 4287923 YP_759078.1 CDS HNE_0348 NC_008358.1 341730 342116 D identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; putative addiction module toxin 341730..342116 Hyphomonas neptunium ATCC 15444 4287118 YP_759079.1 CDS hemF NC_008358.1 342121 343014 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(342121..343014) Hyphomonas neptunium ATCC 15444 4287578 YP_759080.1 CDS petA NC_008358.1 343216 343779 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01416; ubiquinol-cytochrome c reductase, iron-sulfur subunit 343216..343779 Hyphomonas neptunium ATCC 15444 4289300 YP_759081.1 CDS HNE_0351 NC_008358.1 343795 345255 D identified by similarity to SP:P08502; match to protein family HMM PF00032; match to protein family HMM PF00033; putative ubiquinol-cytochrome c reductase, cytochrome b 343795..345255 Hyphomonas neptunium ATCC 15444 4288282 YP_759082.1 CDS HNE_0352 NC_008358.1 345281 346240 D identified by similarity to SP:P23135; match to protein family HMM PF02167; putative ubiquinol-cytochrome c reductase, cytochrome c1 345281..346240 Hyphomonas neptunium ATCC 15444 4287294 YP_759083.1 CDS HNE_0353 NC_008358.1 346256 346774 D identified by match to protein family HMM PF00583; acetyltransferase 346256..346774 Hyphomonas neptunium ATCC 15444 4290043 YP_759084.1 CDS mtaP NC_008358.1 346771 347649 D identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694; methylthioadenosine phosphorylase 346771..347649 Hyphomonas neptunium ATCC 15444 4288484 YP_759085.1 CDS HNE_0355 NC_008358.1 347721 348719 D hypothetical protein 347721..348719 Hyphomonas neptunium ATCC 15444 4287021 YP_759086.1 CDS HNE_0356 NC_008358.1 348691 349173 D identified by similarity to GB:AAK24445.1; putative lipoprotein 348691..349173 Hyphomonas neptunium ATCC 15444 4287432 YP_759087.1 CDS HNE_0357 NC_008358.1 349255 349803 R identified by match to protein family HMM PF02469; fasciclin domain-containing protein complement(349255..349803) Hyphomonas neptunium ATCC 15444 4290283 YP_759088.1 CDS HNE_0358 NC_008358.1 349930 350493 R identified by match to protein family HMM PF02469; fasciclin domain-containing protein complement(349930..350493) Hyphomonas neptunium ATCC 15444 4290180 YP_759089.1 CDS HNE_0359 NC_008358.1 350712 351245 R identified by match to protein family HMM PF02469; fasciclin domain-containing protein complement(350712..351245) Hyphomonas neptunium ATCC 15444 4290361 YP_759090.1 CDS HNE_0360 NC_008358.1 351455 352165 D identified by match to protein family HMM PF00226; DnaJ family molecular chaperone 351455..352165 Hyphomonas neptunium ATCC 15444 4289562 YP_759091.1 CDS HNE_0361 NC_008358.1 352256 352540 D hypothetical protein 352256..352540 Hyphomonas neptunium ATCC 15444 4287427 YP_759092.1 CDS prs NC_008358.1 352622 353560 R identified by match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase complement(352622..353560) Hyphomonas neptunium ATCC 15444 4289124 YP_759093.1 CDS HNE_0363 NC_008358.1 353684 354448 R identified by similarity to GB:CAE29801.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein complement(353684..354448) Hyphomonas neptunium ATCC 15444 4287165 YP_759094.1 CDS typA NC_008358.1 354630 356462 D identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA 354630..356462 Hyphomonas neptunium ATCC 15444 4287227 YP_759095.1 CDS HNE_0365 NC_008358.1 356489 356863 R identified by similarity to GB:AAM36520.1; putative lipoprotein complement(356489..356863) Hyphomonas neptunium ATCC 15444 4288532 YP_759096.1 CDS HNE_0366 NC_008358.1 357030 357215 D hypothetical protein 357030..357215 Hyphomonas neptunium ATCC 15444 4289202 YP_759097.1 CDS HNE_0367 NC_008358.1 357286 358482 R hypothetical protein complement(357286..358482) Hyphomonas neptunium ATCC 15444 4289103 YP_759098.1 CDS HNE_0368 NC_008358.1 358788 359132 R hypothetical protein complement(358788..359132) Hyphomonas neptunium ATCC 15444 4290092 YP_759099.1 CDS HNE_0369 NC_008358.1 359705 360382 D hypothetical protein 359705..360382 Hyphomonas neptunium ATCC 15444 4289577 YP_759100.1 CDS recR NC_008358.1 360379 360984 R identified by similarity to SP:Q9XAI4; match to protein family HMM PF01751; match to protein family HMM PF02132; match to protein family HMM TIGR00615; recombination protein RecR complement(360379..360984) Hyphomonas neptunium ATCC 15444 4290200 YP_759101.1 CDS HNE_0371 NC_008358.1 361108 361431 R identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein complement(361108..361431) Hyphomonas neptunium ATCC 15444 4288143 YP_759102.1 CDS dnaX NC_008358.1 361448 363184 R identified by similarity to GB:AAB61695.1; match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau complement(361448..363184) Hyphomonas neptunium ATCC 15444 4289739 YP_759103.1 CDS nrdF NC_008358.1 363300 364337 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(363300..364337) Hyphomonas neptunium ATCC 15444 4289108 YP_759104.1 CDS HNE_0374 NC_008358.1 364480 365775 R identified by similarity to GB:AAN58344.1; hypothetical protein complement(364480..365775) Hyphomonas neptunium ATCC 15444 4288734 YP_759105.1 CDS HNE_0375 NC_008358.1 366022 366948 R identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(366022..366948) Hyphomonas neptunium ATCC 15444 4287675 YP_759106.1 CDS HNE_0376 NC_008358.1 367177 370086 D PKD domain-containing protein 367177..370086 Hyphomonas neptunium ATCC 15444 4290462 YP_759107.1 CDS HNE_0377 NC_008358.1 370160 370432 R identified by match to protein family HMM PF05154; TM2 domain-containing protein complement(370160..370432) Hyphomonas neptunium ATCC 15444 4288136 YP_759108.1 CDS HNE_0378 NC_008358.1 370629 370994 R identified by match to protein family HMM PF05239; PRC-barrel domain-containing protein complement(370629..370994) Hyphomonas neptunium ATCC 15444 4290336 YP_759109.1 CDS HNE_0379 NC_008358.1 371146 372003 D identified by similarity to SP:P28637; match to protein family HMM PF06325; putative ribosomal protein L11 methyltransferase PrmA 371146..372003 Hyphomonas neptunium ATCC 15444 4290256 YP_759110.1 CDS HNE_0380 NC_008358.1 372145 372402 D hypothetical protein 372145..372402 Hyphomonas neptunium ATCC 15444 4289714 YP_759111.1 CDS HNE_0381 NC_008358.1 372504 374315 D identified by match to protein family HMM PF00557; M24 family peptidase 372504..374315 Hyphomonas neptunium ATCC 15444 4289522 YP_759112.1 CDS HNE_0382 NC_008358.1 374437 374886 D hypothetical protein 374437..374886 Hyphomonas neptunium ATCC 15444 4289220 YP_759113.1 CDS HNE_0383 NC_008358.1 374970 376094 R identified by match to protein family HMM PF01120; putative alpha-L-fucosidase complement(374970..376094) Hyphomonas neptunium ATCC 15444 4288824 YP_759114.1 CDS HNE_0384 NC_008358.1 376116 376847 R identified by similarity to GB:AAS95207.1; hypothetical protein complement(376116..376847) Hyphomonas neptunium ATCC 15444 4289580 YP_759115.1 CDS HNE_0385 NC_008358.1 376880 378664 D putative DNA repair protein RecN 376880..378664 Hyphomonas neptunium ATCC 15444 4287170 YP_759116.1 CDS ligA NC_008358.1 378661 380766 D identified by similarity to SP:P28719; match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 378661..380766 Hyphomonas neptunium ATCC 15444 4287273 YP_759117.1 CDS HNE_0387 NC_008358.1 380786 381619 R identified by similarity to SP:Q50985; putative competence lipoprotein ComL complement(380786..381619) Hyphomonas neptunium ATCC 15444 4289848 YP_759118.1 CDS HNE_0388 NC_008358.1 381843 382274 D identified by match to protein family HMM PF01381; DNA-binding protein 381843..382274 Hyphomonas neptunium ATCC 15444 4288958 YP_759119.1 CDS lpxC NC_008358.1 382294 383205 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(382294..383205) Hyphomonas neptunium ATCC 15444 4287471 YP_759120.1 CDS ftsZ NC_008358.1 383488 384972 R identified by similarity to GB:AAC44223.1; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ complement(383488..384972) Hyphomonas neptunium ATCC 15444 4287143 YP_759121.1 CDS ftsA NC_008358.1 385096 386391 R identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(385096..386391) Hyphomonas neptunium ATCC 15444 4288620 YP_759122.1 CDS HNE_0392 NC_008358.1 386391 387263 R identified by match to protein family HMM PF03799; putative cell division protein FtsQ complement(386391..387263) Hyphomonas neptunium ATCC 15444 4289900 YP_759123.1 CDS HNE_0393 NC_008358.1 387251 388171 R identified by match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase complement(387251..388171) Hyphomonas neptunium ATCC 15444 4290239 YP_759124.1 CDS HNE_0394 NC_008358.1 388448 390490 D identified by similarity to GB:AAK22211.1; match to protein family HMM PF07715; hypothetical protein 388448..390490 Hyphomonas neptunium ATCC 15444 4288230 YP_759125.1 CDS HNE_0395 NC_008358.1 390627 391298 D identified by similarity to SP:O28592; hypothetical protein 390627..391298 Hyphomonas neptunium ATCC 15444 4289020 YP_759126.1 CDS HNE_0396 NC_008358.1 391307 391780 D identified by match to protein family HMM TIGR02391; hypothetical protein 391307..391780 Hyphomonas neptunium ATCC 15444 4289008 YP_759127.1 CDS murB NC_008358.1 391893 392864 R identified by match to protein family HMM PF01565; match to protein family HMM PF02873; match to protein family HMM TIGR00179; UDP-N-acetylenolpyruvoylglucosamine reductase complement(391893..392864) Hyphomonas neptunium ATCC 15444 4289907 YP_759128.1 CDS HNE_0398 NC_008358.1 392949 393566 R hypothetical protein complement(392949..393566) Hyphomonas neptunium ATCC 15444 4289051 YP_759129.1 CDS HNE_0399 NC_008358.1 393820 396267 D identified by similarity to SP:Q9RQQ9; match to protein family HMM PF00512; match to protein family HMM PF02518; putative tyrosine kinase DivL 393820..396267 Hyphomonas neptunium ATCC 15444 4288783 YP_759130.1 CDS HNE_0400 NC_008358.1 396465 397778 R identified by match to protein family HMM PF00375; sodium/dicarboxylate symporter complement(396465..397778) Hyphomonas neptunium ATCC 15444 4288175 YP_759131.1 CDS hrpB NC_008358.1 397904 400342 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM TIGR01970; ATP-dependent helicase HrpB 397904..400342 Hyphomonas neptunium ATCC 15444 4287063 YP_759132.1 CDS dacB NC_008358.1 400364 401806 D identified by match to protein family HMM PF02113; match to protein family HMM TIGR00666; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 400364..401806 Hyphomonas neptunium ATCC 15444 4289746 YP_759133.1 CDS HNE_0403 NC_008358.1 401819 402247 R hypothetical protein complement(401819..402247) Hyphomonas neptunium ATCC 15444 4290288 YP_759134.1 CDS HNE_0404 NC_008358.1 402417 403988 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein complement(402417..403988) Hyphomonas neptunium ATCC 15444 4288839 YP_759135.1 CDS HNE_0405 NC_008358.1 404087 405220 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(404087..405220) Hyphomonas neptunium ATCC 15444 4290037 YP_759136.1 CDS HNE_0406 NC_008358.1 405333 405980 R identified by match to protein family HMM PF00849; RNA pseudouridine synthase family protein complement(405333..405980) Hyphomonas neptunium ATCC 15444 4288333 YP_759137.1 CDS HNE_0407 NC_008358.1 405977 407401 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(405977..407401) Hyphomonas neptunium ATCC 15444 4287769 YP_759138.1 CDS HNE_0408 NC_008358.1 407462 408895 R identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(407462..408895) Hyphomonas neptunium ATCC 15444 4290360 YP_759139.1 CDS HNE_0409 NC_008358.1 408888 409640 R hypothetical protein complement(408888..409640) Hyphomonas neptunium ATCC 15444 4288703 YP_759140.1 CDS HNE_0410 NC_008358.1 409755 410624 R identified by similarity to GB:CAG18846.1; hypothetical protein complement(409755..410624) Hyphomonas neptunium ATCC 15444 4288102 YP_759141.1 CDS HNE_0411 NC_008358.1 410702 411877 R identified by match to protein family HMM PF00144; beta-lactamase complement(410702..411877) Hyphomonas neptunium ATCC 15444 4290205 YP_759142.1 CDS rpmH NC_008358.1 412071 412205 D identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; 50S ribosomal protein L34 412071..412205 Hyphomonas neptunium ATCC 15444 4288831 YP_759143.1 CDS rnpA NC_008358.1 412243 412608 D identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component 412243..412608 Hyphomonas neptunium ATCC 15444 4289160 YP_759144.1 CDS HNE_0414 NC_008358.1 412663 414483 D identified by match to protein family HMM PF02096; inner membrane protein, 60 kDa 412663..414483 Hyphomonas neptunium ATCC 15444 4287246 YP_759145.1 CDS engB NC_008358.1 414487 415149 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 414487..415149 Hyphomonas neptunium ATCC 15444 4290546 YP_759146.1 CDS HNE_0416 NC_008358.1 415186 415647 D identified by match to protein family HMM PF00583; acetyltransferase 415186..415647 Hyphomonas neptunium ATCC 15444 4288584 YP_759147.1 CDS HNE_0417 NC_008358.1 415707 415949 D hypothetical protein 415707..415949 Hyphomonas neptunium ATCC 15444 4290214 YP_759148.1 CDS argB NC_008358.1 416012 416905 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 416012..416905 Hyphomonas neptunium ATCC 15444 4288427 YP_759149.1 CDS HNE_0419 NC_008358.1 416880 417911 D identified by similarity to GB:BAC53367.1; hypothetical protein 416880..417911 Hyphomonas neptunium ATCC 15444 4289310 YP_759150.1 CDS HNE_0420 NC_008358.1 417908 418651 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01993; pyrimidine 5'-nucleotidase 417908..418651 Hyphomonas neptunium ATCC 15444 4287022 YP_759151.1 CDS dapD NC_008358.1 418669 419496 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 418669..419496 Hyphomonas neptunium ATCC 15444 4290122 YP_759152.1 CDS HNE_0422 NC_008358.1 419571 419798 D identified by similarity to GB:BAC68232.1; hypothetical protein 419571..419798 Hyphomonas neptunium ATCC 15444 4289172 YP_759153.1 CDS HNE_0423 NC_008358.1 419937 420983 D identified by match to protein family HMM PF02518; match to protein family HMM PF07536; putative sensor histidine kinase 419937..420983 Hyphomonas neptunium ATCC 15444 4289354 YP_759154.1 CDS HNE_0424 NC_008358.1 421009 421767 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(421009..421767) Hyphomonas neptunium ATCC 15444 4289270 YP_759155.1 CDS HNE_0425 NC_008358.1 421842 422993 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 421842..422993 Hyphomonas neptunium ATCC 15444 4287319 YP_759156.1 CDS HNE_0426 NC_008358.1 423046 424035 D identified by match to protein family HMM PF01075; heptosyltransferase family protein 423046..424035 Hyphomonas neptunium ATCC 15444 4289612 YP_759157.1 CDS HNE_0427 NC_008358.1 424065 426581 R identified by similarity to GB:AAK25319.1; hypothetical protein complement(424065..426581) Hyphomonas neptunium ATCC 15444 4288397 YP_759158.1 CDS infC NC_008358.1 426869 427411 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 426869..427411 Hyphomonas neptunium ATCC 15444 4290109 YP_759159.1 CDS HNE_0429 NC_008358.1 427573 428574 D identified by match to protein family HMM PF02518; match to protein family HMM PF07536; putative sensory box sensor histidine kinase 427573..428574 Hyphomonas neptunium ATCC 15444 4287043 YP_759160.1 CDS rpmI NC_008358.1 428731 428931 D identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 428731..428931 Hyphomonas neptunium ATCC 15444 4288331 YP_759161.1 CDS rplT NC_008358.1 428990 429352 D identified by match to protein family HMM PF00453; match to protein family HMM TIGR01032; 50S ribosomal protein L20 428990..429352 Hyphomonas neptunium ATCC 15444 4289298 YP_759162.1 CDS HNE_0432 NC_008358.1 429374 429535 D hypothetical protein 429374..429535 Hyphomonas neptunium ATCC 15444 4287557 YP_759163.1 CDS pheS NC_008358.1 429669 430745 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 429669..430745 Hyphomonas neptunium ATCC 15444 4290033 YP_759164.1 CDS HNE_0434 NC_008358.1 430742 431221 D identified by similarity to PIR:H85525; match to protein family HMM PF06171; hypothetical protein 430742..431221 Hyphomonas neptunium ATCC 15444 4288667 YP_759165.1 CDS pheT NC_008358.1 431218 433611 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 431218..433611 Hyphomonas neptunium ATCC 15444 4288603 YP_759166.1 CDS HNE_0436 NC_008358.1 433636 434457 D identified by match to protein family HMM PF00520; match to protein family HMM PF07885; cation channel family protein 433636..434457 Hyphomonas neptunium ATCC 15444 4289696 YP_759167.1 CDS dapB NC_008358.1 434450 435280 D identified by similarity to SP:Q52419; match to protein family HMM PF01113; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase 434450..435280 Hyphomonas neptunium ATCC 15444 4288607 YP_759168.1 CDS HNE_0438 NC_008358.1 435380 435784 D identified by match to protein family HMM PF03610; PTS system mannose/fructose/sorbose family transporter subunit IID 435380..435784 Hyphomonas neptunium ATCC 15444 4289162 YP_759169.1 CDS HNE_0439 NC_008358.1 435784 436077 D identified by similarity to SP:P23537; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr 435784..436077 Hyphomonas neptunium ATCC 15444 4288190 YP_759170.1 CDS leuA NC_008358.1 436088 437647 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(436088..437647) Hyphomonas neptunium ATCC 15444 4289243 YP_759171.1 CDS HNE_0441 NC_008358.1 437799 438548 R identified by similarity to GB:AAK23517.1; hypothetical protein complement(437799..438548) Hyphomonas neptunium ATCC 15444 4289858 YP_759172.1 CDS HNE_0442 NC_008358.1 438602 439570 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(438602..439570) Hyphomonas neptunium ATCC 15444 4288583 YP_759173.1 CDS HNE_0443 NC_008358.1 439717 440322 D identified by similarity to GB:CAE09532.1; hypothetical protein 439717..440322 Hyphomonas neptunium ATCC 15444 4287678 YP_759174.1 CDS HNE_0444 NC_008358.1 440319 440783 R identified by match to protein family HMM PF04519; putative lipoprotein complement(440319..440783) Hyphomonas neptunium ATCC 15444 4287232 YP_759175.1 CDS HNE_0445 NC_008358.1 440872 441546 D identified by match to protein family HMM PF01183; glycosyl hydrolase family protein 440872..441546 Hyphomonas neptunium ATCC 15444 4289726 YP_759176.1 CDS HNE_0446 NC_008358.1 441554 442120 R identified by match to protein family HMM PF00583; acetyltransferase complement(441554..442120) Hyphomonas neptunium ATCC 15444 4287631 YP_759177.1 CDS ilvC NC_008358.1 442135 443154 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(442135..443154) Hyphomonas neptunium ATCC 15444 4288885 YP_759178.1 CDS HNE_0448 NC_008358.1 443205 443828 R hypothetical protein complement(443205..443828) Hyphomonas neptunium ATCC 15444 4288013 YP_759179.1 CDS ilvH NC_008358.1 443828 444394 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(443828..444394) Hyphomonas neptunium ATCC 15444 4287281 YP_759180.1 CDS HNE_0450 NC_008358.1 444391 445092 R hypothetical protein complement(444391..445092) Hyphomonas neptunium ATCC 15444 4289136 YP_759181.1 CDS ilvB NC_008358.1 445126 446862 R identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit, biosynthetic type complement(445126..446862) Hyphomonas neptunium ATCC 15444 4288385 YP_759182.1 CDS miaA NC_008358.1 447110 448060 R identified by similarity to SP:P38436; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase complement(447110..448060) Hyphomonas neptunium ATCC 15444 4288372 YP_759183.1 CDS serB NC_008358.1 448141 449040 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase SerB 448141..449040 Hyphomonas neptunium ATCC 15444 4287299 YP_759184.1 CDS HNE_0454 NC_008358.1 449047 449517 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 449047..449517 Hyphomonas neptunium ATCC 15444 4288521 YP_759185.1 CDS HNE_0455 NC_008358.1 449505 450266 R identified by similarity to GB:AAL22149.1; match to protein family HMM PF06104; hypothetical protein complement(449505..450266) Hyphomonas neptunium ATCC 15444 4290347 YP_759186.1 CDS pgsA NC_008358.1 450516 451169 R identified by match to protein family HMM PF01066; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(450516..451169) Hyphomonas neptunium ATCC 15444 4289444 YP_759187.1 CDS HNE_0457 NC_008358.1 451215 452753 R identified by similarity to GB:AAK22186.1; hypothetical protein complement(451215..452753) Hyphomonas neptunium ATCC 15444 4288590 YP_759188.1 CDS HNE_0458 NC_008358.1 452796 454178 R identified by similarity to GB:AAK22186.1; hypothetical protein complement(452796..454178) Hyphomonas neptunium ATCC 15444 4287393 YP_759189.1 CDS thyA NC_008358.1 454360 455154 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 454360..455154 Hyphomonas neptunium ATCC 15444 4287829 YP_759190.1 CDS HNE_0460 NC_008358.1 455174 455680 R putative lipoprotein complement(455174..455680) Hyphomonas neptunium ATCC 15444 4290207 YP_759191.1 CDS aqpZ NC_008358.1 455843 456523 D identified by similarity to GB:BAB53131.1; match to protein family HMM PF00230; match to protein family HMM TIGR00861; aquaporin Z 455843..456523 Hyphomonas neptunium ATCC 15444 4287563 YP_759192.1 CDS HNE_0462 NC_008358.1 456652 457314 R hypothetical protein complement(456652..457314) Hyphomonas neptunium ATCC 15444 4287859 YP_759193.1 CDS folA NC_008358.1 457456 457986 D identified by similarity to SP:P04174; match to protein family HMM PF00186; dihydrofolate reductase 457456..457986 Hyphomonas neptunium ATCC 15444 4287352 YP_759194.1 CDS HNE_0464 NC_008358.1 458078 458998 D putative gluconolactonase 458078..458998 Hyphomonas neptunium ATCC 15444 4290240 YP_759195.1 CDS HNE_0465 NC_008358.1 459047 459484 R identified by match to protein family HMM PF01042; putative endoribonuclease L-PSP complement(459047..459484) Hyphomonas neptunium ATCC 15444 4288759 YP_759196.1 CDS HNE_0466 NC_008358.1 459625 460329 R hypothetical protein complement(459625..460329) Hyphomonas neptunium ATCC 15444 4290428 YP_759197.1 CDS HNE_0467 NC_008358.1 460391 460543 R hypothetical protein complement(460391..460543) Hyphomonas neptunium ATCC 15444 4290104 YP_759198.1 CDS HNE_0468 NC_008358.1 460693 461925 R identified by similarity to GB:BAC49007.1; hypothetical protein complement(460693..461925) Hyphomonas neptunium ATCC 15444 4287860 YP_759199.1 CDS hflK NC_008358.1 462082 463248 D identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; HflK protein 462082..463248 Hyphomonas neptunium ATCC 15444 4288439 YP_759200.1 CDS hflC NC_008358.1 463248 464144 D identified by match to protein family HMM PF01145; match to protein family HMM TIGR01932; HflC protein 463248..464144 Hyphomonas neptunium ATCC 15444 4288029 YP_759201.1 CDS HNE_0471 NC_008358.1 464163 464363 D hypothetical protein 464163..464363 Hyphomonas neptunium ATCC 15444 4288176 YP_759202.1 CDS HNE_0472 NC_008358.1 464464 465915 D identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Do family protease 464464..465915 Hyphomonas neptunium ATCC 15444 4290293 YP_759203.1 CDS HNE_0473 NC_008358.1 466173 467162 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; sodium/calcium exchanger 466173..467162 Hyphomonas neptunium ATCC 15444 4290026 YP_759204.1 CDS HNE_0474 NC_008358.1 467159 467911 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 467159..467911 Hyphomonas neptunium ATCC 15444 4289408 YP_759205.1 CDS ltaE NC_008358.1 467922 468959 D identified by similarity to SP:O50584; match to protein family HMM PF01212; threonine aldolase, low-specificity 467922..468959 Hyphomonas neptunium ATCC 15444 4289125 YP_759206.1 CDS HNE_0476 NC_008358.1 468956 470011 R identified by match to protein family HMM PF00478; match to protein family HMM PF03060; 2-nitropropane dioxygenase complement(468956..470011) Hyphomonas neptunium ATCC 15444 4287374 YP_759207.1 CDS HNE_0477 NC_008358.1 470057 470674 R hypothetical protein complement(470057..470674) Hyphomonas neptunium ATCC 15444 4287704 YP_759208.1 CDS HNE_0478 NC_008358.1 470791 471078 D hypothetical protein 470791..471078 Hyphomonas neptunium ATCC 15444 4288967 YP_759209.1 CDS HNE_0479 NC_008358.1 472229 473104 D identified by match to protein family HMM PF03631; hypothetical protein 472229..473104 Hyphomonas neptunium ATCC 15444 4287146 YP_759210.1 CDS HNE_0480 NC_008358.1 473062 473796 R identified by match to protein family HMM PF01510; N-acetylmuramoyl-L-alanine amidase complement(473062..473796) Hyphomonas neptunium ATCC 15444 4289966 YP_759211.1 CDS HNE_0481 NC_008358.1 473796 474698 R identified by similarity to GB:AAK24538.1; match to protein family HMM PF00892; hypothetical protein complement(473796..474698) Hyphomonas neptunium ATCC 15444 4288004 YP_759212.1 CDS HNE_0482 NC_008358.1 474928 476103 R identified by match to protein family HMM PF00665; ISHne2, transposase complement(474928..476103) Hyphomonas neptunium ATCC 15444 4289640 YP_759213.1 CDS HNE_0483 NC_008358.1 476262 477125 R identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(476262..477125) Hyphomonas neptunium ATCC 15444 4289199 YP_759214.1 CDS HNE_0484 NC_008358.1 477270 478064 D identified by match to protein family HMM PF01925; hypothetical protein 477270..478064 Hyphomonas neptunium ATCC 15444 4289818 YP_759215.1 CDS HNE_0485 NC_008358.1 478189 478908 D identified by similarity to GB:CAE39528.1; hypothetical protein 478189..478908 Hyphomonas neptunium ATCC 15444 4288290 YP_759216.1 CDS HNE_0486 NC_008358.1 478908 479534 D UbiE/COQ5 family methlytransferase 478908..479534 Hyphomonas neptunium ATCC 15444 4288188 YP_759217.1 CDS HNE_0487 NC_008358.1 479548 480375 D identified by similarity to GB:BAC90287.1; hypothetical protein 479548..480375 Hyphomonas neptunium ATCC 15444 4287150 YP_759218.1 CDS HNE_0488 NC_008358.1 480406 480843 D identified by similarity to PIR:AG3273; match to protein family HMM PF04543; hypothetical protein 480406..480843 Hyphomonas neptunium ATCC 15444 4288957 YP_759219.1 CDS HNE_0489 NC_008358.1 480847 481587 R identified by similarity to GB:CAD31353.1; hypothetical protein complement(480847..481587) Hyphomonas neptunium ATCC 15444 4290451 YP_759220.1 CDS HNE_0490 NC_008358.1 481670 482200 R identified by match to protein family HMM TIGR00213; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; D,D-heptose 1,7-bisphosphate phosphatase complement(481670..482200) Hyphomonas neptunium ATCC 15444 4288993 YP_759221.1 CDS HNE_0491 NC_008358.1 482786 484963 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF03707; match to protein family HMM TIGR00254; signalling protein N terminal repeat/GGDEF/EAL domain-containing protein 482786..484963 Hyphomonas neptunium ATCC 15444 4288310 YP_759222.1 CDS tetA NC_008358.1 484964 486217 R identified by similarity to SP:P02981; match to protein family HMM PF00083; match to protein family HMM PF07690; tetracycline-efflux transporter complement(484964..486217) Hyphomonas neptunium ATCC 15444 4289933 YP_759223.1 CDS HNE_0493 NC_008358.1 486216 486755 D hypothetical protein 486216..486755 Hyphomonas neptunium ATCC 15444 4289501 YP_759224.1 CDS HNE_0494 NC_008358.1 486801 487982 R identified by similarity to GB:AAK24045.1; hypothetical protein complement(486801..487982) Hyphomonas neptunium ATCC 15444 4289913 YP_759225.1 CDS HNE_0495 NC_008358.1 488069 488917 D putative lipoprotein 488069..488917 Hyphomonas neptunium ATCC 15444 4287410 YP_759226.1 CDS HNE_0496 NC_008358.1 488979 489731 D identified by similarity to GB:BAC53108.1; hypothetical protein 488979..489731 Hyphomonas neptunium ATCC 15444 4290176 YP_759227.1 CDS HNE_0497 NC_008358.1 489735 490061 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein complement(489735..490061) Hyphomonas neptunium ATCC 15444 4288890 YP_759228.1 CDS HNE_0498 NC_008358.1 490185 491069 R identified by similarity to GB:AAK23436.1; match to protein family HMM PF00004; match to protein family HMM PF07728; hypothetical protein complement(490185..491069) Hyphomonas neptunium ATCC 15444 4288355 YP_759229.1 CDS flbT NC_008358.1 491437 491817 D post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 491437..491817 Hyphomonas neptunium ATCC 15444 4289606 YP_759230.1 CDS HNE_0500 NC_008358.1 491817 492128 D identified by similarity to GB:AAD39949.1; hypothetical protein 491817..492128 Hyphomonas neptunium ATCC 15444 4290513 YP_759231.1 CDS HNE_0501 NC_008358.1 492138 492788 D identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC membrane protein 492138..492788 Hyphomonas neptunium ATCC 15444 4289370 YP_759232.1 CDS HNE_0502 NC_008358.1 492795 494309 R hypothetical protein complement(492795..494309) Hyphomonas neptunium ATCC 15444 4287496 YP_759233.1 CDS dksA NC_008358.1 494368 494835 D identified by match to protein family HMM PF01258; match to protein family HMM TIGR02420; RNA polymerase-binding protein DksA 494368..494835 Hyphomonas neptunium ATCC 15444 4290086 YP_759234.1 CDS HNE_0504 NC_008358.1 495235 496212 D SPOA domain-containing protein 495235..496212 Hyphomonas neptunium ATCC 15444 4288237 YP_759235.1 CDS HNE_0505 NC_008358.1 496190 496858 R identified by match to protein family HMM PF04264; hypothetical protein complement(496190..496858) Hyphomonas neptunium ATCC 15444 4290448 YP_759236.1 CDS HNE_0506 NC_008358.1 496831 498690 R identified by match to protein family HMM PF05960; putative lipoprotein complement(496831..498690) Hyphomonas neptunium ATCC 15444 4287176 YP_759237.1 CDS HNE_0507 NC_008358.1 498883 501486 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; putative sensor histidine kinase/response regulator CckA 498883..501486 Hyphomonas neptunium ATCC 15444 4290187 YP_759238.1 CDS HNE_0508 NC_008358.1 501510 502247 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(501510..502247) Hyphomonas neptunium ATCC 15444 4287952 YP_759239.1 CDS HNE_0509 NC_008358.1 502252 503148 R identified by match to protein family HMM PF03767; 5'-nucleotidase complement(502252..503148) Hyphomonas neptunium ATCC 15444 4290538 YP_759240.1 CDS HNE_0510 NC_008358.1 503356 504333 D identified by match to protein family HMM PF00478; match to protein family HMM PF03060; 2-nitropropane dioxygenase 503356..504333 Hyphomonas neptunium ATCC 15444 4288738 YP_759241.1 CDS HNE_0511 NC_008358.1 504464 505801 D identified by match to protein family HMM PF02646; RmuC domain-containing protein 504464..505801 Hyphomonas neptunium ATCC 15444 4288704 YP_759242.1 CDS def NC_008358.1 505844 506374 D identified by match to protein family HMM PF01327; match to protein family HMM TIGR00079; peptide deformylase 505844..506374 Hyphomonas neptunium ATCC 15444 4290364 YP_759243.1 CDS fmt NC_008358.1 506427 507386 D identified by match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 506427..507386 Hyphomonas neptunium ATCC 15444 4288580 YP_759244.1 CDS HNE_0514 NC_008358.1 507386 507874 D identified by match to protein family HMM PF00583; acetyltransferase 507386..507874 Hyphomonas neptunium ATCC 15444 4287756 YP_759245.1 CDS truA NC_008358.1 507919 508662 D identified by match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A 507919..508662 Hyphomonas neptunium ATCC 15444 4289509 YP_759246.1 CDS HNE_0516 NC_008358.1 508735 509970 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 508735..509970 Hyphomonas neptunium ATCC 15444 4288820 YP_759247.1 CDS HNE_0517 NC_008358.1 509988 510356 D identified by match to protein family HMM PF07110; match to protein family HMM TIGR02118; hypothetical protein 509988..510356 Hyphomonas neptunium ATCC 15444 4289677 YP_759248.1 CDS glnD NC_008358.1 510405 513248 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 510405..513248 Hyphomonas neptunium ATCC 15444 4288337 YP_759249.1 CDS mviN NC_008358.1 513272 514828 D identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN 513272..514828 Hyphomonas neptunium ATCC 15444 4288462 YP_759250.1 CDS trpS NC_008358.1 514854 515888 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 514854..515888 Hyphomonas neptunium ATCC 15444 4288865 YP_759251.1 CDS HNE_0521 NC_008358.1 516245 517321 D hypothetical protein 516245..517321 Hyphomonas neptunium ATCC 15444 4288545 YP_759252.1 CDS HNE_0522 NC_008358.1 517373 517951 D identified by match to protein family HMM PF01106; NifU domain-containing protein 517373..517951 Hyphomonas neptunium ATCC 15444 4288031 YP_759253.1 CDS HNE_0523 NC_008358.1 518090 518689 D identified by match to protein family HMM PF00881; hypothetical protein 518090..518689 Hyphomonas neptunium ATCC 15444 4288431 YP_759254.1 CDS HNE_0524 NC_008358.1 518699 519343 D identified by match to protein family HMM PF00814; family M22 nonpeptidase-like protein 518699..519343 Hyphomonas neptunium ATCC 15444 4287662 YP_759255.1 CDS HNE_0525 NC_008358.1 519340 520653 R identified by similarity to SP:P36928; HSP70 family protein complement(519340..520653) Hyphomonas neptunium ATCC 15444 4287517 YP_759256.1 CDS rimI NC_008358.1 520764 521219 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase 520764..521219 Hyphomonas neptunium ATCC 15444 4287456 YP_759257.1 CDS HNE_0527 NC_008358.1 521295 522191 D identified by match to protein family HMM PF01738; dienelactone hydrolase family protein 521295..522191 Hyphomonas neptunium ATCC 15444 4289716 YP_759258.1 CDS fur NC_008358.1 522238 522657 D identified by similarity to GB:AAC32180.1; match to protein family HMM PF01475; ferric uptake regulation protein 522238..522657 Hyphomonas neptunium ATCC 15444 4290404 YP_759259.1 CDS HNE_0529 NC_008358.1 522750 523910 R identified by similarity to GB:CAE33394.1; match to protein family HMM PF07995; glucose/sorbosone family dehydrogenase complement(522750..523910) Hyphomonas neptunium ATCC 15444 4289235 YP_759260.1 CDS HNE_0530 NC_008358.1 524048 527032 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(524048..527032) Hyphomonas neptunium ATCC 15444 4287499 YP_759261.1 CDS exsB NC_008358.1 527263 527982 D identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein 527263..527982 Hyphomonas neptunium ATCC 15444 4289088 YP_759262.1 CDS HNE_0532 NC_008358.1 527979 528626 D identified by similarity to GB:AAW61285.1; hypothetical protein 527979..528626 Hyphomonas neptunium ATCC 15444 4289464 YP_759263.1 CDS HNE_0533 NC_008358.1 528581 529021 D identified by match to protein family HMM PF01242; putative 6-pyruvoyl tetrahydropterin synthase 528581..529021 Hyphomonas neptunium ATCC 15444 4287518 YP_759264.1 CDS HNE_0534 NC_008358.1 529082 530533 D identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein 529082..530533 Hyphomonas neptunium ATCC 15444 4288071 YP_759265.1 CDS HNE_0535 NC_008358.1 530592 531059 R hypothetical protein complement(530592..531059) Hyphomonas neptunium ATCC 15444 4289638 YP_759266.1 CDS HNE_0536 NC_008358.1 531165 531860 R identified by similarity to GB:CAE26354.1; match to protein family HMM PF02678; hypothetical protein complement(531165..531860) Hyphomonas neptunium ATCC 15444 4288907 YP_759267.1 CDS HNE_0537 NC_008358.1 531985 532743 D hypothetical protein 531985..532743 Hyphomonas neptunium ATCC 15444 4287987 YP_759268.1 CDS HNE_0538 NC_008358.1 532986 533891 R identified by match to protein family HMM PF00665; ISHne1, transposase orfB complement(532986..533891) Hyphomonas neptunium ATCC 15444 4286984 YP_759269.1 CDS HNE_0539 NC_008358.1 533888 534220 R identified by match to protein family HMM PF01527; ISHne1, transposase orfA complement(533888..534220) Hyphomonas neptunium ATCC 15444 4287005 YP_759270.1 CDS HNE_0540 NC_008358.1 534233 535009 R identified by match to protein family HMM PF07751; Abi-like family protein complement(534233..535009) Hyphomonas neptunium ATCC 15444 4289743 YP_759271.1 CDS recQ NC_008358.1 535327 537174 D identified by similarity to GB:AAA24517.1; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 535327..537174 Hyphomonas neptunium ATCC 15444 4288132 YP_759272.1 CDS HNE_0542 NC_008358.1 537385 537987 D identified by match to protein family HMM PF00574; putative ATP-dependent Clp protease, proteolytic subunit ClpP 537385..537987 Hyphomonas neptunium ATCC 15444 4290251 YP_759273.1 CDS HNE_0543 NC_008358.1 538066 539697 D identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase/response regulator 538066..539697 Hyphomonas neptunium ATCC 15444 4288391 YP_759274.1 CDS HNE_0544 NC_008358.1 539707 541944 R identified by match to protein family HMM PF01734; patatin family phospholipase complement(539707..541944) Hyphomonas neptunium ATCC 15444 4288105 YP_759275.1 CDS HNE_0546 NC_008358.1 542135 543265 R identified by match to protein family HMM PF01266; FAD-binding oxidoreductase complement(542135..543265) Hyphomonas neptunium ATCC 15444 4288965 YP_759276.1 CDS HNE_0547 NC_008358.1 543314 544078 D hypothetical protein 543314..544078 Hyphomonas neptunium ATCC 15444 4289380 YP_759277.1 CDS trxB NC_008358.1 544084 545055 R identified by similarity to SP:P09625; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(544084..545055) Hyphomonas neptunium ATCC 15444 4287020 YP_759278.1 CDS HNE_0549 NC_008358.1 545163 546086 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter complement(545163..546086) Hyphomonas neptunium ATCC 15444 4287550 YP_759279.1 CDS HNE_0550 NC_008358.1 546605 547153 R hypothetical protein complement(546605..547153) Hyphomonas neptunium ATCC 15444 4290148 YP_759280.1 CDS HNE_0551 NC_008358.1 547543 547725 R identified by similarity to GB:BAB47714.1; hypothetical protein complement(547543..547725) Hyphomonas neptunium ATCC 15444 4290341 YP_759281.1 CDS gyrB NC_008358.1 547859 550303 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(547859..550303) Hyphomonas neptunium ATCC 15444 4289618 YP_759282.1 CDS HNE_0553 NC_008358.1 550478 552604 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; DEAD/DEAH box helicase complement(550478..552604) Hyphomonas neptunium ATCC 15444 4288556 YP_759283.1 CDS hemN NC_008358.1 552736 554088 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 552736..554088 Hyphomonas neptunium ATCC 15444 4290477 YP_759284.1 CDS fghA NC_008358.1 554085 554927 R identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase complement(554085..554927) Hyphomonas neptunium ATCC 15444 4289379 YP_759285.1 CDS HNE_0556 NC_008358.1 555670 556035 R hypothetical protein complement(555670..556035) Hyphomonas neptunium ATCC 15444 4287612 YP_759286.1 CDS HNE_0557 NC_008358.1 556176 556466 R hypothetical protein complement(556176..556466) Hyphomonas neptunium ATCC 15444 4288773 YP_759287.1 CDS HNE_0558 NC_008358.1 556489 556866 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(556489..556866) Hyphomonas neptunium ATCC 15444 4290524 YP_759288.1 CDS HNE_0559 NC_008358.1 556898 557365 R identified by similarity to GB:CAC46585.1; match to protein family HMM PF04828; hypothetical protein complement(556898..557365) Hyphomonas neptunium ATCC 15444 4287383 YP_759289.1 CDS HNE_0560 NC_008358.1 557365 558471 R identified by similarity to SP:P45382; match to protein family HMM PF00107; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/alcohol dehydrogenase, class III complement(557365..558471) Hyphomonas neptunium ATCC 15444 4287395 YP_759290.1 CDS recF NC_008358.1 558540 559652 R identified by similarity to GB:AAB51449.1; match to protein family HMM TIGR00611; DNA replication and repair protein RecF complement(558540..559652) Hyphomonas neptunium ATCC 15444 4287847 YP_759291.1 CDS HNE_0562 NC_008358.1 559659 559961 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein complement(559659..559961) Hyphomonas neptunium ATCC 15444 4288867 YP_759292.1 CDS dnaN NC_008358.1 560058 561179 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(560058..561179) Hyphomonas neptunium ATCC 15444 4289729 YP_759293.1 CDS dnaA NC_008358.1 561363 562736 R identified by match to protein family HMM PF00308; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA complement(561363..562736) Hyphomonas neptunium ATCC 15444 4290237 YP_759294.1 CDS rpsT NC_008358.1 563369 563632 R identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029; 30S ribosomal protein S20 complement(563369..563632) Hyphomonas neptunium ATCC 15444 4288852 YP_759295.1 CDS HNE_0566 NC_008358.1 563750 564532 R identified by similarity to SP:P14604; match to protein family HMM PF00378; enoyl-CoA hydratase complement(563750..564532) Hyphomonas neptunium ATCC 15444 4288916 YP_759296.1 CDS HNE_0567 NC_008358.1 564778 566142 D identified by match to protein family HMM PF03109; ABC1 family protein 564778..566142 Hyphomonas neptunium ATCC 15444 4287184 YP_759297.1 CDS HNE_0568 NC_008358.1 566139 566831 D identified by match to protein family HMM PF01569; PAP2 (2 phosphatidic acid phosphatase) family protein 566139..566831 Hyphomonas neptunium ATCC 15444 4287031 YP_759298.1 CDS HNE_0569 NC_008358.1 566839 568113 R identified by match to protein family HMM PF00067; cytochrome P450 family protein complement(566839..568113) Hyphomonas neptunium ATCC 15444 4289191 YP_759299.1 CDS HNE_0570 NC_008358.1 568276 568896 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 568276..568896 Hyphomonas neptunium ATCC 15444 4287849 YP_759300.1 CDS HNE_0571 NC_008358.1 568893 569069 D identified by match to protein family HMM PF00301; rubredoxin 568893..569069 Hyphomonas neptunium ATCC 15444 4287400 YP_759301.1 CDS HNE_0572 NC_008358.1 569066 569770 R hypothetical protein complement(569066..569770) Hyphomonas neptunium ATCC 15444 4286996 YP_759302.1 CDS HNE_0573 NC_008358.1 569925 570395 D identified by match to protein family HMM PF03061; thioesterase family protein 569925..570395 Hyphomonas neptunium ATCC 15444 4287967 YP_759303.1 CDS HNE_0574 NC_008358.1 570422 571474 R identified by match to protein family HMM PF03741; TerC family membrane protein complement(570422..571474) Hyphomonas neptunium ATCC 15444 4288857 YP_759304.1 CDS HNE_0575 NC_008358.1 571624 573051 R identified by similarity to SP:P17551; match to protein family HMM PF02417; match to protein family HMM TIGR00937; putative chromate ion transporter complement(571624..573051) Hyphomonas neptunium ATCC 15444 4287581 YP_759305.1 CDS HNE_0576 NC_008358.1 573051 573185 R hypothetical protein complement(573051..573185) Hyphomonas neptunium ATCC 15444 4289976 YP_759306.1 CDS hisS NC_008358.1 573266 574759 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 573266..574759 Hyphomonas neptunium ATCC 15444 4287372 YP_759307.1 CDS HNE_0578 NC_008358.1 574756 575877 D identified by match to protein family HMM PF00587; tRNA synthetase class II core domain-containing protein 574756..575877 Hyphomonas neptunium ATCC 15444 4287754 YP_759308.1 CDS hisG NC_008358.1 575874 576584 D identified by match to protein family HMM PF01634; ATP phosphoribosyltransferase 575874..576584 Hyphomonas neptunium ATCC 15444 4287934 YP_759309.1 CDS argD NC_008358.1 576992 578179 D identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine/succinylornithine aminotransferase 576992..578179 Hyphomonas neptunium ATCC 15444 4287149 YP_759310.1 CDS HNE_0581 NC_008358.1 578286 578852 D identified by similarity to GB:AAU48428.1; hypothetical protein 578286..578852 Hyphomonas neptunium ATCC 15444 4288233 YP_759311.1 CDS HNE_0582 NC_008358.1 579106 581736 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 579106..581736 Hyphomonas neptunium ATCC 15444 4287452 YP_759312.1 CDS HNE_0583 NC_008358.1 581737 582927 R identified by match to protein family HMM PF03583; lipase family protein complement(581737..582927) Hyphomonas neptunium ATCC 15444 4289245 YP_759313.1 CDS HNE_0584 NC_008358.1 583062 583898 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 583062..583898 Hyphomonas neptunium ATCC 15444 4288433 YP_759314.1 CDS HNE_0585 NC_008358.1 583902 585032 R identified by match to protein family HMM PF00278; putative carboxynorspermidine decarboxylase complement(583902..585032) Hyphomonas neptunium ATCC 15444 4287840 YP_759315.1 CDS HNE_0586 NC_008358.1 585022 585276 R hypothetical protein complement(585022..585276) Hyphomonas neptunium ATCC 15444 4287093 YP_759316.1 CDS HNE_0587 NC_008358.1 585050 585310 D hypothetical protein 585050..585310 Hyphomonas neptunium ATCC 15444 4287765 YP_759317.1 CDS lys1 NC_008358.1 585280 586494 R identified by match to protein family HMM PF03435; saccharopine dehydrogenase complement(585280..586494) Hyphomonas neptunium ATCC 15444 4289012 YP_759318.1 CDS HNE_0589 NC_008358.1 586633 586953 D identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein 586633..586953 Hyphomonas neptunium ATCC 15444 4289234 YP_759319.1 CDS HNE_0590 NC_008358.1 586970 587350 R hypothetical protein complement(586970..587350) Hyphomonas neptunium ATCC 15444 4287439 YP_759320.1 CDS HNE_0591 NC_008358.1 587684 587938 D identified by similarity to GB:CAC45198.1; match to protein family HMM PF04226; hypothetical protein 587684..587938 Hyphomonas neptunium ATCC 15444 4289166 YP_759321.1 CDS argF NC_008358.1 588075 589001 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 588075..589001 Hyphomonas neptunium ATCC 15444 4290222 YP_759322.1 CDS HNE_0593 NC_008358.1 589080 590015 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 589080..590015 Hyphomonas neptunium ATCC 15444 4288489 YP_759323.1 CDS hslO NC_008358.1 590148 591074 D identified by similarity to SP:P45803; match to protein family HMM PF01430; chaperonin HslO 590148..591074 Hyphomonas neptunium ATCC 15444 4290306 YP_759324.1 CDS HNE_0595 NC_008358.1 591217 592101 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family protein complement(591217..592101) Hyphomonas neptunium ATCC 15444 4289590 YP_759325.1 CDS HNE_0596 NC_008358.1 592202 592615 R identified by similarity to GB:CAE26245.1; hypothetical protein complement(592202..592615) Hyphomonas neptunium ATCC 15444 4288735 YP_759326.1 CDS HNE_0597 NC_008358.1 592674 593507 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(592674..593507) Hyphomonas neptunium ATCC 15444 4288318 YP_759327.1 CDS HNE_0598 NC_008358.1 593606 594772 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein complement(593606..594772) Hyphomonas neptunium ATCC 15444 4287787 YP_759328.1 CDS HNE_0599 NC_008358.1 594769 595527 R identified by similarity to GB:AAS82400.1; hypothetical protein complement(594769..595527) Hyphomonas neptunium ATCC 15444 4289971 YP_759329.1 CDS HNE_0600 NC_008358.1 595591 596811 R identified by match to protein family HMM PF00089; trypsin domain-containing protein complement(595591..596811) Hyphomonas neptunium ATCC 15444 4287030 YP_759330.1 CDS HNE_0601 NC_008358.1 596981 598465 D identified by match to protein family HMM PF00144; beta-lactamase 596981..598465 Hyphomonas neptunium ATCC 15444 4289614 YP_759331.1 CDS HNE_0602 NC_008358.1 599373 600065 D hypothetical protein 599373..600065 Hyphomonas neptunium ATCC 15444 4287292 YP_759332.1 CDS HNE_0603 NC_008358.1 600461 601138 R hypothetical protein complement(600461..601138) Hyphomonas neptunium ATCC 15444 4289874 YP_759333.1 CDS HNE_0604 NC_008358.1 601239 603866 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; DEAD/DEAH box helicase 601239..603866 Hyphomonas neptunium ATCC 15444 4287636 YP_759334.1 CDS HNE_0605 NC_008358.1 603863 604996 R identified by match to protein family HMM PF01757; acyltransferase family protein complement(603863..604996) Hyphomonas neptunium ATCC 15444 4287691 YP_759335.1 CDS HNE_0606 NC_008358.1 604993 606039 R identified by similarity to GB:AAK22190.1; hypothetical protein complement(604993..606039) Hyphomonas neptunium ATCC 15444 4288688 YP_759336.1 CDS HNE_0607 NC_008358.1 606239 606859 D hypothetical protein 606239..606859 Hyphomonas neptunium ATCC 15444 4288200 YP_759337.1 CDS HNE_0608 NC_008358.1 606923 607657 D hypothetical protein 606923..607657 Hyphomonas neptunium ATCC 15444 4289926 YP_759338.1 CDS HNE_0609 NC_008358.1 607715 609097 D identified by similarity to GB:BAC46414.1; hypothetical protein 607715..609097 Hyphomonas neptunium ATCC 15444 4287911 YP_759339.1 CDS HNE_0610 NC_008358.1 609200 610462 D identified by match to protein family HMM PF00860; match to protein family HMM PF00916; sulfate permease 609200..610462 Hyphomonas neptunium ATCC 15444 4289922 YP_759340.1 CDS HNE_0611 NC_008358.1 610523 611140 D identified by match to protein family HMM PF00717; S24 family peptidase 610523..611140 Hyphomonas neptunium ATCC 15444 4290248 YP_759341.1 CDS HNE_0612 NC_008358.1 611150 611680 R hypothetical protein complement(611150..611680) Hyphomonas neptunium ATCC 15444 4287009 YP_759342.1 CDS HNE_0613 NC_008358.1 611834 613318 D identified by match to protein family HMM PF00282; decarboxylase, group II 611834..613318 Hyphomonas neptunium ATCC 15444 4288063 YP_759343.1 CDS HNE_0614 NC_008358.1 613299 614792 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein complement(613299..614792) Hyphomonas neptunium ATCC 15444 4290185 YP_759344.1 CDS HNE_0615 NC_008358.1 614791 616302 D identified by match to protein family HMM PF07690; major facilitator transporter 614791..616302 Hyphomonas neptunium ATCC 15444 4289286 YP_759345.1 CDS HNE_0616 NC_008358.1 616321 616932 R identified by similarity to GB:CAG19473.1; match to protein family HMM PF06041; hypothetical protein complement(616321..616932) Hyphomonas neptunium ATCC 15444 4288492 YP_759346.1 CDS ubiG NC_008358.1 616929 617705 R identified by match to protein family HMM TIGR01983; ubiquinone biosynthesis O-methyltransferase complement(616929..617705) Hyphomonas neptunium ATCC 15444 4290130 YP_759347.1 CDS HNE_0618 NC_008358.1 617800 619047 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 617800..619047 Hyphomonas neptunium ATCC 15444 4290419 YP_759348.1 CDS ptsP NC_008358.1 619072 621339 D identified by similarity to SP:P37177; match to protein family HMM PF00391; match to protein family HMM PF01590; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase PtsP 619072..621339 Hyphomonas neptunium ATCC 15444 4289733 YP_759349.1 CDS HNE_0620 NC_008358.1 621439 622413 D hypothetical protein 621439..622413 Hyphomonas neptunium ATCC 15444 4289331 YP_759350.1 CDS ispG NC_008358.1 622497 623639 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 622497..623639 Hyphomonas neptunium ATCC 15444 4287199 YP_759351.1 CDS HNE_0622 NC_008358.1 623649 624182 R identified by similarity to PIR:B69520; hypothetical protein complement(623649..624182) Hyphomonas neptunium ATCC 15444 4288730 YP_759352.1 CDS HNE_0623 NC_008358.1 624182 624784 R identified by similarity to PIR:C69520; hypothetical protein complement(624182..624784) Hyphomonas neptunium ATCC 15444 4290069 YP_759353.1 CDS HNE_0624 NC_008358.1 624799 626178 D acetyl xylan esterase domain-containing protein 624799..626178 Hyphomonas neptunium ATCC 15444 4288713 YP_759354.1 CDS HNE_0625 NC_008358.1 626217 626648 D identified by similarity to PIR:AI2479; hypothetical protein 626217..626648 Hyphomonas neptunium ATCC 15444 4287862 YP_759355.1 CDS prfA NC_008358.1 626715 627773 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 626715..627773 Hyphomonas neptunium ATCC 15444 4288090 YP_759356.1 CDS HNE_0627 NC_008358.1 627770 628588 D identified by match to protein family HMM PF03473; match to protein family HMM PF03476; MOSC domain-containing protein 627770..628588 Hyphomonas neptunium ATCC 15444 4287501 YP_759357.1 CDS HNE_0628 NC_008358.1 628588 629472 D putative lipoprotein 628588..629472 Hyphomonas neptunium ATCC 15444 4289661 YP_759358.1 CDS HNE_0629 NC_008358.1 629469 630326 D identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; HemK family methyltransferase 629469..630326 Hyphomonas neptunium ATCC 15444 4288608 YP_759359.1 CDS HNE_0630 NC_008358.1 630546 631325 D identified by similarity to GB:BAB50321.1; hypothetical protein 630546..631325 Hyphomonas neptunium ATCC 15444 4288406 YP_759360.1 CDS clpB NC_008358.1 631509 634127 D identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; ATP-dependent chaperone protein ClpB 631509..634127 Hyphomonas neptunium ATCC 15444 4289791 YP_759361.1 CDS HNE_0632 NC_008358.1 634174 635544 R identified by match to protein family HMM PF01551; M23 family peptidase complement(634174..635544) Hyphomonas neptunium ATCC 15444 4288410 YP_759362.1 CDS HNE_0633 NC_008358.1 635690 637066 R identified by match to protein family HMM PF01551; M23 family peptidase complement(635690..637066) Hyphomonas neptunium ATCC 15444 4288054 YP_759363.1 CDS HNE_0634 NC_008358.1 637241 640570 D identified by similarity to GB:AAK25513.1; hypothetical protein 637241..640570 Hyphomonas neptunium ATCC 15444 4290407 YP_759364.1 CDS HNE_0635 NC_008358.1 640660 640851 D identified by similarity to GB:AAN55110.1; putative lipoprotein 640660..640851 Hyphomonas neptunium ATCC 15444 4288689 YP_759365.1 CDS HNE_0636 NC_008358.1 640879 641229 D identified by similarity to SP:P76076; hypothetical protein 640879..641229 Hyphomonas neptunium ATCC 15444 4288975 YP_759366.1 CDS HNE_0637 NC_008358.1 641355 641597 D hypothetical protein 641355..641597 Hyphomonas neptunium ATCC 15444 4289039 YP_759367.1 CDS HNE_0638 NC_008358.1 641708 642355 D identified by similarity to GB:BAB49848.1; hypothetical protein 641708..642355 Hyphomonas neptunium ATCC 15444 4287512 YP_759368.1 CDS cheY NC_008358.1 642444 642809 D identified by similarity to SP:Q51455; match to protein family HMM PF00072; chemotaxis protein CheY 642444..642809 Hyphomonas neptunium ATCC 15444 4290241 YP_759369.1 CDS cheR NC_008358.1 642879 643715 D identified by match to protein family HMM PF01739; match to protein family HMM PF03705; chemotaxis protein methyltransferase 642879..643715 Hyphomonas neptunium ATCC 15444 4286985 YP_759370.1 CDS trmU NC_008358.1 643812 644996 D identified by match to protein family HMM PF03054; match to protein family HMM TIGR00420; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 643812..644996 Hyphomonas neptunium ATCC 15444 4289290 YP_759371.1 CDS HNE_0642 NC_008358.1 645005 646069 R identified by similarity to GB:AAK24813.1; match to protein family HMM PF06258; hypothetical protein complement(645005..646069) Hyphomonas neptunium ATCC 15444 4290159 YP_759372.1 CDS greA NC_008358.1 646081 646554 R identified by similarity to SP:P21346; match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA complement(646081..646554) Hyphomonas neptunium ATCC 15444 4289203 YP_759373.1 CDS carB NC_008358.1 646624 649902 R identified by match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit complement(646624..649902) Hyphomonas neptunium ATCC 15444 4289168 YP_759374.1 CDS HNE_0645 NC_008358.1 650025 650420 D putative lipoprotein 650025..650420 Hyphomonas neptunium ATCC 15444 4287820 YP_759375.1 CDS HNE_0646 NC_008358.1 650465 650788 D hypothetical protein 650465..650788 Hyphomonas neptunium ATCC 15444 4287101 YP_759376.1 CDS HNE_0647 NC_008358.1 650868 652100 D hypothetical protein 650868..652100 Hyphomonas neptunium ATCC 15444 4289411 YP_759377.1 CDS HNE_0648 NC_008358.1 652174 652518 R identified by match to protein family HMM PF05433; putative lipoprotein complement(652174..652518) Hyphomonas neptunium ATCC 15444 4289271 YP_759378.1 CDS HNE_0649 NC_008358.1 652594 653328 R identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein complement(652594..653328) Hyphomonas neptunium ATCC 15444 4290083 YP_759379.1 CDS HNE_0650 NC_008358.1 653440 654411 D identified by match to protein family HMM PF01435; M48 family peptidase 653440..654411 Hyphomonas neptunium ATCC 15444 4287685 YP_759380.1 CDS HNE_0651 NC_008358.1 654786 655376 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 654786..655376 Hyphomonas neptunium ATCC 15444 4289741 YP_759381.1 CDS HNE_0652 NC_008358.1 655476 656666 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 655476..656666 Hyphomonas neptunium ATCC 15444 4290355 YP_759382.1 CDS HNE_0653 NC_008358.1 656715 657002 R identified by similarity to GB:AAW60109.1; match to protein family HMM PF07045; hypothetical protein complement(656715..657002) Hyphomonas neptunium ATCC 15444 4288728 YP_759383.1 CDS HNE_0654 NC_008358.1 657080 658003 R identified by similarity to GB:AAK22343.1; hypothetical protein complement(657080..658003) Hyphomonas neptunium ATCC 15444 4287264 YP_759384.1 CDS HNE_0655 NC_008358.1 658000 658563 R identified by similarity to SP:P32692; FUR family transcriptional regulator complement(658000..658563) Hyphomonas neptunium ATCC 15444 4287335 YP_759385.1 CDS HNE_0656 NC_008358.1 658615 658998 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 658615..658998 Hyphomonas neptunium ATCC 15444 4290353 YP_759386.1 CDS HNE_0657 NC_008358.1 659030 659890 D identified by match to protein family HMM PF00877; NlpC/P60 family protein 659030..659890 Hyphomonas neptunium ATCC 15444 4288295 YP_759387.1 CDS HNE_0658 NC_008358.1 659971 660768 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(659971..660768) Hyphomonas neptunium ATCC 15444 4288334 YP_759388.1 CDS HNE_0659 NC_008358.1 660931 661767 D identified by match to protein family HMM PF00800; prephenate dehydratase 660931..661767 Hyphomonas neptunium ATCC 15444 4289908 YP_759389.1 CDS HNE_0660 NC_008358.1 661751 662671 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; match to protein family HMM TIGR01199; LysR family transcriptional regulator complement(661751..662671) Hyphomonas neptunium ATCC 15444 4290454 YP_759390.1 CDS HNE_0661 NC_008358.1 662796 663287 D identified by similarity to GB:AAS72102.1; hypothetical protein 662796..663287 Hyphomonas neptunium ATCC 15444 4289353 YP_759391.1 CDS HNE_0662 NC_008358.1 663353 663811 D identified by match to protein family HMM PF04945; YHS domain-containing protein 663353..663811 Hyphomonas neptunium ATCC 15444 4288350 YP_759392.1 CDS HNE_0663 NC_008358.1 664050 664277 R hypothetical protein complement(664050..664277) Hyphomonas neptunium ATCC 15444 4287494 YP_759393.1 CDS HNE_0664 NC_008358.1 664382 665299 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(664382..665299) Hyphomonas neptunium ATCC 15444 4288757 YP_759394.1 CDS HNE_0665 NC_008358.1 665431 667605 D putative lipoprotein 665431..667605 Hyphomonas neptunium ATCC 15444 4287181 YP_759395.1 CDS HNE_0666 NC_008358.1 667614 671330 R identified by similarity to SP:Q9ZG88; match to protein family HMM PF01471; putative localization factor protein PodJ complement(667614..671330) Hyphomonas neptunium ATCC 15444 4287368 YP_759396.1 CDS HNE_0667 NC_008358.1 671606 672085 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 671606..672085 Hyphomonas neptunium ATCC 15444 4288968 YP_759397.1 CDS HNE_0668 NC_008358.1 672196 673980 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein 672196..673980 Hyphomonas neptunium ATCC 15444 4288987 YP_759398.1 CDS HNE_0669 NC_008358.1 674093 675268 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 674093..675268 Hyphomonas neptunium ATCC 15444 4287740 YP_759399.1 CDS HNE_0670 NC_008358.1 675276 675716 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 675276..675716 Hyphomonas neptunium ATCC 15444 4289862 YP_759400.1 CDS HNE_0671 NC_008358.1 675735 676940 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 675735..676940 Hyphomonas neptunium ATCC 15444 4287646 YP_759401.1 CDS HNE_0672 NC_008358.1 676970 679201 D identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/3-hydroxybutyryl-CoA epimerase 676970..679201 Hyphomonas neptunium ATCC 15444 4288354 YP_759402.1 CDS HNE_0673 NC_008358.1 679299 682028 R identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease complement(679299..682028) Hyphomonas neptunium ATCC 15444 4289962 YP_759403.1 CDS HNE_0674 NC_008358.1 682424 683668 D identified by match to protein family HMM PF01520; N-acetylmuramoyl-L-alanine amidase 682424..683668 Hyphomonas neptunium ATCC 15444 4288813 YP_759404.1 CDS HNE_0675 NC_008358.1 683559 685487 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 683559..685487 Hyphomonas neptunium ATCC 15444 4289183 YP_759405.1 CDS ispE NC_008358.1 685501 686397 D identified by match to protein family HMM PF00288; match to protein family HMM TIGR00154; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 685501..686397 Hyphomonas neptunium ATCC 15444 4288168 YP_759406.1 CDS HNE_0677 NC_008358.1 686394 687461 D identified by match to protein family HMM PF00953; glycosyl transferase family protein 686394..687461 Hyphomonas neptunium ATCC 15444 4288142 YP_759407.1 CDS HNE_0678 NC_008358.1 687463 688476 R identified by match to protein family HMM PF00348; polyprenyl synthetase complement(687463..688476) Hyphomonas neptunium ATCC 15444 4288613 YP_759408.1 CDS HNE_0679 NC_008358.1 688650 689144 D identified by similarity to GB:AAK23266.1; putative lipoprotein 688650..689144 Hyphomonas neptunium ATCC 15444 4290320 YP_759409.1 CDS HNE_0680 NC_008358.1 689144 689350 D identified by similarity to PIR:AG3443; hypothetical protein 689144..689350 Hyphomonas neptunium ATCC 15444 4290137 YP_759410.1 CDS HNE_0681 NC_008358.1 689347 690090 D hypothetical protein 689347..690090 Hyphomonas neptunium ATCC 15444 4289164 YP_759411.1 CDS HNE_0682 NC_008358.1 690167 690280 D hypothetical protein 690167..690280 Hyphomonas neptunium ATCC 15444 4288553 YP_759412.1 CDS glyQ NC_008358.1 690350 691237 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 690350..691237 Hyphomonas neptunium ATCC 15444 4288441 YP_759413.1 CDS HNE_0684 NC_008358.1 691318 691839 D putative lipoprotein 691318..691839 Hyphomonas neptunium ATCC 15444 4290071 YP_759414.1 CDS glyS NC_008358.1 691934 694054 D identified by match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 691934..694054 Hyphomonas neptunium ATCC 15444 4288658 YP_759415.1 CDS ppdK NC_008358.1 694206 696923 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 694206..696923 Hyphomonas neptunium ATCC 15444 4288185 YP_759416.1 CDS HNE_0687 NC_008358.1 697290 698519 D identified by match to protein family HMM PF07486; hydrolase 697290..698519 Hyphomonas neptunium ATCC 15444 4288151 YP_759417.1 CDS HNE_0688 NC_008358.1 698604 699413 R identified by match to protein family HMM PF00106; short chain dehydrogenase complement(698604..699413) Hyphomonas neptunium ATCC 15444 4288768 YP_759418.1 CDS nadC NC_008358.1 699469 700326 R identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase complement(699469..700326) Hyphomonas neptunium ATCC 15444 4287891 YP_759419.1 CDS nadB NC_008358.1 700323 701891 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(700323..701891) Hyphomonas neptunium ATCC 15444 4290370 YP_759420.1 CDS HNE_0691 NC_008358.1 701875 702354 R hypothetical protein complement(701875..702354) Hyphomonas neptunium ATCC 15444 4289090 YP_759421.1 CDS nadA NC_008358.1 702423 703433 R identified by match to protein family HMM PF02445; match to protein family HMM TIGR00550; quinolinate synthetase complex subunit A complement(702423..703433) Hyphomonas neptunium ATCC 15444 4289610 YP_759422.1 CDS HNE_0693 NC_008358.1 703802 705178 R hypothetical protein complement(703802..705178) Hyphomonas neptunium ATCC 15444 4289327 YP_759423.1 CDS HNE_0694 NC_008358.1 705219 706517 R identified by similarity to SP:P80092; match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891; amidohydrolase complement(705219..706517) Hyphomonas neptunium ATCC 15444 4289815 YP_759424.1 CDS HNE_0695 NC_008358.1 707019 708629 R identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; putative ATP-dependent RNA helicase RhlE complement(707019..708629) Hyphomonas neptunium ATCC 15444 4287361 YP_759425.1 CDS sodB NC_008358.1 708830 709492 R identified by similarity to SP:P50061; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase, Fe complement(708830..709492) Hyphomonas neptunium ATCC 15444 4288060 YP_759426.1 CDS HNE_0697 NC_008358.1 709495 710154 D hypothetical protein 709495..710154 Hyphomonas neptunium ATCC 15444 4287536 YP_759427.1 CDS HNE_0698 NC_008358.1 710286 710822 D putative lipoprotein 710286..710822 Hyphomonas neptunium ATCC 15444 4286981 YP_759428.1 CDS HNE_0699 NC_008358.1 710832 711809 R identified by match to protein family HMM PF03279; lipid A biosynthesis acyltransferase complement(710832..711809) Hyphomonas neptunium ATCC 15444 4287780 YP_759429.1 CDS lpxK NC_008358.1 711806 712804 R identified by similarity to SP:P27300; match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase complement(711806..712804) Hyphomonas neptunium ATCC 15444 4288543 YP_759430.1 CDS kdtA NC_008358.1 712801 714090 R identified by match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase complement(712801..714090) Hyphomonas neptunium ATCC 15444 4287463 YP_759431.1 CDS HNE_0702 NC_008358.1 714087 714866 R identified by similarity to GB:AAN33418.1; match to protein family HMM PF04028; hypothetical protein complement(714087..714866) Hyphomonas neptunium ATCC 15444 4287618 YP_759432.1 CDS gph NC_008358.1 715690 716403 R identified by match to protein family HMM PF00702; phosphoglycolate phosphatase complement(715690..716403) Hyphomonas neptunium ATCC 15444 4288416 YP_759433.1 CDS glmU NC_008358.1 716484 717869 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 716484..717869 Hyphomonas neptunium ATCC 15444 4289230 YP_759434.1 CDS rpiA NC_008358.1 717870 718580 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 717870..718580 Hyphomonas neptunium ATCC 15444 4287429 YP_759435.1 CDS gor NC_008358.1 718635 720020 D identified by similarity to SP:P23189; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01424; glutathione-disulfide reductase 718635..720020 Hyphomonas neptunium ATCC 15444 4290049 YP_759436.1 CDS HNE_0708 NC_008358.1 720055 721362 R identified by match to protein family HMM PF01656; nucleotide binding protein complement(720055..721362) Hyphomonas neptunium ATCC 15444 4287491 YP_759437.1 CDS HNE_0709 NC_008358.1 721515 722891 D identified by similarity to SP:P29976; match to protein family HMM PF01474; match to protein family HMM TIGR01358; 3-deoxy-7-phosphoheptulonate synthase 721515..722891 Hyphomonas neptunium ATCC 15444 4287168 YP_759438.1 CDS HNE_0710 NC_008358.1 722960 723676 D identified by match to protein family HMM PF02517; CAAX amino protease 722960..723676 Hyphomonas neptunium ATCC 15444 4288010 YP_759439.1 CDS HNE_0711 NC_008358.1 723851 725266 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 723851..725266 Hyphomonas neptunium ATCC 15444 4289763 YP_759440.1 CDS hup1 NC_008358.1 725298 725564 R identified by similarity to SP:P08821; match to protein family HMM PF00216; DNA-binding protein HU complement(725298..725564) Hyphomonas neptunium ATCC 15444 4288714 YP_759441.1 CDS HNE_0713 NC_008358.1 725664 726575 R identified by similarity to GB:AAK23994.1; hypothetical protein complement(725664..726575) Hyphomonas neptunium ATCC 15444 4287954 YP_759442.1 CDS HNE_0714 NC_008358.1 726579 727601 R identified by similarity to SP:P76113; match to protein family HMM PF00107; L4BD family NADP-dependent oxidoreductase complement(726579..727601) Hyphomonas neptunium ATCC 15444 4289171 YP_759443.1 CDS HNE_0715 NC_008358.1 727824 728750 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; Gfo/Idh/MocA family oxidoreductase 727824..728750 Hyphomonas neptunium ATCC 15444 4289158 YP_759444.1 CDS HNE_0716 NC_008358.1 728752 729468 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(728752..729468) Hyphomonas neptunium ATCC 15444 4288205 YP_759445.1 CDS purF NC_008358.1 729490 730941 R identified by match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase complement(729490..730941) Hyphomonas neptunium ATCC 15444 4289225 YP_759446.1 CDS HNE_0718 NC_008358.1 731057 731905 R hypothetical protein complement(731057..731905) Hyphomonas neptunium ATCC 15444 4287185 YP_759447.1 CDS HNE_0719 NC_008358.1 731970 732497 R identified by match to protein family HMM PF02674; CvpA family protein complement(731970..732497) Hyphomonas neptunium ATCC 15444 4287998 YP_759448.1 CDS radA NC_008358.1 732490 733872 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(732490..733872) Hyphomonas neptunium ATCC 15444 4287013 YP_759449.1 CDS HNE_0721 NC_008358.1 733871 734464 D hypothetical protein 733871..734464 Hyphomonas neptunium ATCC 15444 4289046 YP_759450.1 CDS HNE_0722 NC_008358.1 734501 735694 D identified by match to protein family HMM PF03486; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 734501..735694 Hyphomonas neptunium ATCC 15444 4288771 YP_759451.1 CDS HNE_0723 NC_008358.1 736557 737321 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(736557..737321) Hyphomonas neptunium ATCC 15444 4289873 YP_759452.1 CDS HNE_0724 NC_008358.1 737318 738103 R identified by similarity to GB:AAK25657.1; match to protein family HMM PF02405; hypothetical protein complement(737318..738103) Hyphomonas neptunium ATCC 15444 4289597 YP_759453.1 CDS alr1 NC_008358.1 738110 739165 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(738110..739165) Hyphomonas neptunium ATCC 15444 4289560 YP_759454.1 CDS HNE_0726 NC_008358.1 739198 740850 R identified by match to protein family HMM PF07690; major facilitator family protein complement(739198..740850) Hyphomonas neptunium ATCC 15444 4287089 YP_759455.1 CDS HNE_0727 NC_008358.1 740887 741318 D hypothetical protein 740887..741318 Hyphomonas neptunium ATCC 15444 4290242 YP_759456.1 CDS HNE_0728 NC_008358.1 741404 742585 D identified by similarity to GB:AAK22932.1; hypothetical protein 741404..742585 Hyphomonas neptunium ATCC 15444 4288844 YP_759457.1 CDS HNE_0729 NC_008358.1 742679 743164 D identified by match to protein family HMM PF01899; MnhE/PhaE family monovalent cation/proton antiporter 742679..743164 Hyphomonas neptunium ATCC 15444 4289955 YP_759458.1 CDS HNE_0730 NC_008358.1 743164 743460 D identified by match to protein family HMM PF04066; MnhF/PhaF family monovalent cation/proton antiporter 743164..743460 Hyphomonas neptunium ATCC 15444 4290198 YP_759459.1 CDS HNE_0731 NC_008358.1 743462 743830 D identified by match to protein family HMM PF03334; match to protein family HMM TIGR01300; MnhG/PhaG family monovalent cation/proton antiporter 743462..743830 Hyphomonas neptunium ATCC 15444 4287351 YP_759460.1 CDS HNE_0732 NC_008358.1 743827 744444 D hypothetical protein 743827..744444 Hyphomonas neptunium ATCC 15444 4289314 YP_759461.1 CDS HNE_0733 NC_008358.1 744444 744896 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit B 744444..744896 Hyphomonas neptunium ATCC 15444 4289812 YP_759462.1 CDS HNE_0734 NC_008358.1 744901 745401 D identified by match to protein family HMM PF00420; putative NADH-quinone oxidoreductase 744901..745401 Hyphomonas neptunium ATCC 15444 4289909 YP_759463.1 CDS HNE_0735 NC_008358.1 745440 746936 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 745440..746936 Hyphomonas neptunium ATCC 15444 4289256 YP_759464.1 CDS HNE_0736 NC_008358.1 746933 748441 D identified by match to protein family HMM PF00361; putative NADH-quinone oxidoreductase 746933..748441 Hyphomonas neptunium ATCC 15444 4287152 YP_759465.1 CDS HNE_0737 NC_008358.1 748438 748881 D hypothetical protein 748438..748881 Hyphomonas neptunium ATCC 15444 4287113 YP_759466.1 CDS HNE_0738 NC_008358.1 748881 750656 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D 748881..750656 Hyphomonas neptunium ATCC 15444 4289869 YP_759467.1 CDS HNE_0739 NC_008358.1 750827 751240 D identified by similarity to PIR:G97470; match to protein family HMM PF05443; Ros/MucR family transcriptional regulator 750827..751240 Hyphomonas neptunium ATCC 15444 4290139 YP_759468.1 CDS HNE_0740 NC_008358.1 751388 751888 D identified by similarity to GB:AAV95219.1; hypothetical protein 751388..751888 Hyphomonas neptunium ATCC 15444 4288144 YP_759469.1 CDS HNE_0741 NC_008358.1 751990 752334 D identified by similarity to GB:AAK23042.1; DnaA domain-containing protein 751990..752334 Hyphomonas neptunium ATCC 15444 4288396 YP_759470.1 CDS HNE_0742 NC_008358.1 752331 753014 D hypothetical protein 752331..753014 Hyphomonas neptunium ATCC 15444 4290035 YP_759471.1 CDS HNE_0743 NC_008358.1 752667 752933 R hypothetical protein complement(752667..752933) Hyphomonas neptunium ATCC 15444 4289979 YP_759472.1 CDS HNE_0744 NC_008358.1 753021 753440 R identified by match to protein family HMM PF02657; SufE family Fe-S metabolism protein complement(753021..753440) Hyphomonas neptunium ATCC 15444 4287258 YP_759473.1 CDS HNE_0745 NC_008358.1 753527 754525 R identified by similarity to GB:AAK22473.1; hypothetical protein complement(753527..754525) Hyphomonas neptunium ATCC 15444 4288460 YP_759474.1 CDS HNE_0746 NC_008358.1 754650 756269 D identified by similarity to SP:Q03228; match to protein family HMM PF00512; match to protein family HMM PF02518; putative sensor histidine kinase DivJ 754650..756269 Hyphomonas neptunium ATCC 15444 4288153 YP_759475.1 CDS HNE_0747 NC_008358.1 756361 756672 D putative lipoprotein 756361..756672 Hyphomonas neptunium ATCC 15444 4289079 YP_759476.1 CDS HNE_0748 NC_008358.1 756703 757050 D identified by similarity to GB:AAK23049.1; match to protein family HMM PF07372; hypothetical protein 756703..757050 Hyphomonas neptunium ATCC 15444 4287882 YP_759477.1 CDS HNE_0749 NC_008358.1 757148 757552 D putative lipoprotein 757148..757552 Hyphomonas neptunium ATCC 15444 4287871 YP_759478.1 CDS HNE_0750 NC_008358.1 757679 757999 D hypothetical protein 757679..757999 Hyphomonas neptunium ATCC 15444 4289115 YP_759479.1 CDS HNE_0751 NC_008358.1 758071 758427 D hypothetical protein 758071..758427 Hyphomonas neptunium ATCC 15444 4287750 YP_759480.1 CDS HNE_0752 NC_008358.1 758558 760159 D identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00503; putative peptide chain release factor 3 758558..760159 Hyphomonas neptunium ATCC 15444 4287225 YP_759481.1 CDS HNE_0753 NC_008358.1 760128 760610 R identified by similarity to GB:CAA65843.1; hypothetical protein complement(760128..760610) Hyphomonas neptunium ATCC 15444 4289328 YP_759482.1 CDS HNE_0754 NC_008358.1 760691 762517 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(760691..762517) Hyphomonas neptunium ATCC 15444 4289686 YP_759483.1 CDS rsuA NC_008358.1 762551 763225 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A complement(762551..763225) Hyphomonas neptunium ATCC 15444 4287472 YP_759484.1 CDS HNE_0756 NC_008358.1 763233 764273 R identified by match to protein family HMM PF05175; putative methyltransferase complement(763233..764273) Hyphomonas neptunium ATCC 15444 4287670 YP_759485.1 CDS HNE_0757 NC_008358.1 764335 765243 R putative lipoprotein complement(764335..765243) Hyphomonas neptunium ATCC 15444 4287666 YP_759486.1 CDS HNE_0758 NC_008358.1 765360 766610 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(765360..766610) Hyphomonas neptunium ATCC 15444 4287424 YP_759487.1 CDS HNE_0759 NC_008358.1 767029 767448 D identified by match to protein family HMM PF07811; TadE-like family protein 767029..767448 Hyphomonas neptunium ATCC 15444 4287541 YP_759488.1 CDS HNE_0760 NC_008358.1 767450 769180 D identified by similarity to PIR:AE2774; hypothetical protein 767450..769180 Hyphomonas neptunium ATCC 15444 4288044 YP_759489.1 CDS dnaJ NC_008358.1 769227 770387 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(769227..770387) Hyphomonas neptunium ATCC 15444 4287989 YP_759490.1 CDS HNE_0762 NC_008358.1 770487 771785 R identified by similarity to GB:CAE25769.1; hypothetical protein complement(770487..771785) Hyphomonas neptunium ATCC 15444 4288681 YP_759491.1 CDS HNE_0763 NC_008358.1 771833 772708 D identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein 771833..772708 Hyphomonas neptunium ATCC 15444 4287365 YP_759492.1 CDS HNE_0764 NC_008358.1 772698 773066 D identified by similarity to SP:Q8UIJ2; match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein 772698..773066 Hyphomonas neptunium ATCC 15444 4287966 YP_759493.1 CDS HNE_0765 NC_008358.1 773212 774978 D hypothetical protein 773212..774978 Hyphomonas neptunium ATCC 15444 4288332 YP_759494.1 CDS HNE_0766 NC_008358.1 774989 776116 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 774989..776116 Hyphomonas neptunium ATCC 15444 4288400 YP_759495.1 CDS HNE_0767 NC_008358.1 776126 776593 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(776126..776593) Hyphomonas neptunium ATCC 15444 4290178 YP_759496.1 CDS HNE_0768 NC_008358.1 776708 778801 D identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; 1A family penicillin-binding protein 776708..778801 Hyphomonas neptunium ATCC 15444 4290498 YP_759497.1 CDS HNE_0769 NC_008358.1 778903 779886 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase complement(778903..779886) Hyphomonas neptunium ATCC 15444 4288114 YP_759498.1 CDS HNE_0770 NC_008358.1 780195 780776 D identified by match to protein family HMM PF07298; NnrU family protein 780195..780776 Hyphomonas neptunium ATCC 15444 4288451 YP_759499.1 CDS panB NC_008358.1 780833 781660 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 780833..781660 Hyphomonas neptunium ATCC 15444 4289619 YP_759500.1 CDS HNE_0772 NC_008358.1 781740 782456 D identified by similarity to GB:BAC49315.1; hypothetical protein 781740..782456 Hyphomonas neptunium ATCC 15444 4287736 YP_759501.1 CDS HNE_0773 NC_008358.1 782453 783802 D PQQ repeat-containing protein 782453..783802 Hyphomonas neptunium ATCC 15444 4288244 YP_759502.1 CDS engA NC_008358.1 783855 785387 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 783855..785387 Hyphomonas neptunium ATCC 15444 4287235 YP_759503.1 CDS HNE_0775 NC_008358.1 785452 786522 R identified by match to protein family HMM PF00483; mannose-1-phosphate guanylyltransferase complement(785452..786522) Hyphomonas neptunium ATCC 15444 4287514 YP_759504.1 CDS cysNC NC_008358.1 786610 788541 R identified by match to protein family HMM PF00009; match to protein family HMM PF01583; match to protein family HMM PF03144; match to protein family HMM TIGR00455; match to protein family HMM TIGR02034; sulfate adenylyltransferase complement(786610..788541) Hyphomonas neptunium ATCC 15444 4290203 YP_759505.1 CDS cysD NC_008358.1 788541 789527 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(788541..789527) Hyphomonas neptunium ATCC 15444 4289582 YP_759506.1 CDS glmS NC_008358.1 789693 791519 D identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase 789693..791519 Hyphomonas neptunium ATCC 15444 4289965 YP_759507.1 CDS rfbC NC_008358.1 791573 792154 D identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase 791573..792154 Hyphomonas neptunium ATCC 15444 4290511 YP_759508.1 CDS rfbD NC_008358.1 792151 793041 D identified by match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase 792151..793041 Hyphomonas neptunium ATCC 15444 4290395 YP_759509.1 CDS HNE_0781 NC_008358.1 793156 793989 D hypothetical protein 793156..793989 Hyphomonas neptunium ATCC 15444 4289938 YP_759510.1 CDS HNE_0782 NC_008358.1 793956 795161 R identified by match to protein family HMM PF07221; N-acylglucosamine 2-epimerase complement(793956..795161) Hyphomonas neptunium ATCC 15444 4287333 YP_759511.1 CDS HNE_0783 NC_008358.1 795428 796582 D identified by match to protein family HMM PF00202; match to protein family HMM PF01041; match to protein family HMM PF01212; DegT/DnrJ/EryC1/StrS aminotransferase family protein 795428..796582 Hyphomonas neptunium ATCC 15444 4290208 YP_759512.1 CDS HNE_0784 NC_008358.1 796755 796973 R identified by match to protein family HMM PF01381; DNA-binding protein complement(796755..796973) Hyphomonas neptunium ATCC 15444 4288731 YP_759513.1 CDS HNE_0785 NC_008358.1 797474 798142 D identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 797474..798142 Hyphomonas neptunium ATCC 15444 4289318 YP_759514.1 CDS metK NC_008358.1 798390 799571 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(798390..799571) Hyphomonas neptunium ATCC 15444 4289752 YP_759515.1 CDS purU NC_008358.1 799594 800451 R identified by match to protein family HMM PF00551; match to protein family HMM PF01842; match to protein family HMM TIGR00655; formyltetrahydrofolate deformylase complement(799594..800451) Hyphomonas neptunium ATCC 15444 4287387 YP_759516.1 CDS ahcY NC_008358.1 800471 801880 R catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase complement(800471..801880) Hyphomonas neptunium ATCC 15444 4289748 YP_759517.1 CDS rfbA NC_008358.1 801993 802868 R identified by similarity to SP:P37744; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(801993..802868) Hyphomonas neptunium ATCC 15444 4289035 YP_759518.1 CDS rfbB NC_008358.1 802980 804077 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase complement(802980..804077) Hyphomonas neptunium ATCC 15444 4290095 YP_759519.1 CDS HNE_0791 NC_008358.1 804078 804470 R putative dTDP-4-dehydrorhamnose 3,5-epimerase complement(804078..804470) Hyphomonas neptunium ATCC 15444 4287577 YP_759520.1 CDS HNE_0792 NC_008358.1 804821 806005 D identified by similarity to GB:AAK53483.1; putative glycosyl transferase 804821..806005 Hyphomonas neptunium ATCC 15444 4289646 YP_759521.1 CDS gmd NC_008358.1 806469 807446 D identified by match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 806469..807446 Hyphomonas neptunium ATCC 15444 4288942 YP_759522.1 CDS HNE_0794 NC_008358.1 807479 808453 D identified by similarity to GB:AAS55712.1; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; putative GDP-6-deoxy-D-lyxo-4-hexulose reductase 807479..808453 Hyphomonas neptunium ATCC 15444 4288576 YP_759523.1 CDS HNE_0795 NC_008358.1 808521 809315 D identified by similarity to GB:AAN67398.1; match to protein family HMM PF01061; lipopolysaccharide ABC transporter permease 808521..809315 Hyphomonas neptunium ATCC 15444 4287485 YP_759524.1 CDS HNE_0796 NC_008358.1 809312 810565 D identified by similarity to GB:AAF04381.1; match to protein family HMM PF00005; lipopolysaccharide ABC transporter ATP-binding protein 809312..810565 Hyphomonas neptunium ATCC 15444 4289341 YP_759525.1 CDS HNE_0797 NC_008358.1 810562 811959 D identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 810562..811959 Hyphomonas neptunium ATCC 15444 4289846 YP_759526.1 CDS HNE_0798 NC_008358.1 812047 814221 R hypothetical protein complement(812047..814221) Hyphomonas neptunium ATCC 15444 4288086 YP_759527.1 CDS HNE_0799 NC_008358.1 814238 815158 R identified by similarity to GB:BAB53993.1; hypothetical protein complement(814238..815158) Hyphomonas neptunium ATCC 15444 4289801 YP_759528.1 CDS HNE_0800 NC_008358.1 815165 815803 R identified by similarity to SP:P17993; 3-demethylubiquinone-9 3-methyltransferase complement(815165..815803) Hyphomonas neptunium ATCC 15444 4288258 YP_759529.1 CDS HNE_0801 NC_008358.1 815822 816772 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(815822..816772) Hyphomonas neptunium ATCC 15444 4287841 YP_759530.1 CDS HNE_0803 NC_008358.1 818133 820280 D hypothetical protein 818133..820280 Hyphomonas neptunium ATCC 15444 4288026 YP_759531.1 CDS HNE_0804 NC_008358.1 820414 824136 R identified by similarity to GB:BAA92237.1; match to protein family HMM PF00534; putative mannosyltransferase complement(820414..824136) Hyphomonas neptunium ATCC 15444 4289905 YP_759532.1 CDS HNE_0805 NC_008358.1 824692 825735 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(824692..825735) Hyphomonas neptunium ATCC 15444 4290065 YP_759533.1 CDS kdsA NC_008358.1 825754 826605 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(825754..826605) Hyphomonas neptunium ATCC 15444 4287045 YP_759534.1 CDS HNE_0807 NC_008358.1 827102 827566 D hypothetical protein 827102..827566 Hyphomonas neptunium ATCC 15444 4289999 YP_759535.1 CDS HNE_0808 NC_008358.1 827714 828103 R identified by similarity to GB:AAK25414.1; hypothetical protein complement(827714..828103) Hyphomonas neptunium ATCC 15444 4287330 YP_759536.1 CDS HNE_0809 NC_008358.1 828265 829605 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 828265..829605 Hyphomonas neptunium ATCC 15444 4287747 YP_759537.1 CDS tnaA NC_008358.1 829662 831026 R tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase complement(829662..831026) Hyphomonas neptunium ATCC 15444 4287932 YP_759538.1 CDS HNE_0811 NC_008358.1 831075 833033 D hypothetical protein 831075..833033 Hyphomonas neptunium ATCC 15444 4290179 YP_759539.1 CDS HNE_0812 NC_008358.1 833040 834020 R identified by match to protein family HMM PF01408; match to protein family HMM PF02894; NAD-binding oxidoreductase complement(833040..834020) Hyphomonas neptunium ATCC 15444 4289526 YP_759540.1 CDS HNE_0813 NC_008358.1 834208 834633 D hypothetical protein 834208..834633 Hyphomonas neptunium ATCC 15444 4289221 YP_759541.1 CDS HNE_0814 NC_008358.1 834705 834983 D hypothetical protein 834705..834983 Hyphomonas neptunium ATCC 15444 4289376 YP_759542.1 CDS HNE_0815 NC_008358.1 834989 838228 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein complement(834989..838228) Hyphomonas neptunium ATCC 15444 4287483 YP_759543.1 CDS HNE_0816 NC_008358.1 838225 839343 R identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(838225..839343) Hyphomonas neptunium ATCC 15444 4288838 YP_759544.1 CDS HNE_0817 NC_008358.1 839464 840963 R identified by similarity to SP:P13397; match to protein family HMM PF01425; putative 6-aminohexanoate-cyclic-dimer hydrolase complement(839464..840963) Hyphomonas neptunium ATCC 15444 4288774 YP_759545.1 CDS HNE_0818 NC_008358.1 841126 841875 D identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478; hemolysin A 841126..841875 Hyphomonas neptunium ATCC 15444 4289510 YP_759546.1 CDS HNE_0819 NC_008358.1 841876 842451 R putative lipoprotein complement(841876..842451) Hyphomonas neptunium ATCC 15444 4290143 YP_759547.1 CDS HNE_0820 NC_008358.1 842544 843443 R hypothetical protein complement(842544..843443) Hyphomonas neptunium ATCC 15444 4288910 YP_759548.1 CDS HNE_0821 NC_008358.1 843453 844550 D hypothetical protein 843453..844550 Hyphomonas neptunium ATCC 15444 4289652 YP_759549.1 CDS HNE_0822 NC_008358.1 844701 845201 D identified by similarity to PIR:S70957; hypothetical protein 844701..845201 Hyphomonas neptunium ATCC 15444 4289121 YP_759550.1 CDS aroC NC_008358.1 845285 846376 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(845285..846376) Hyphomonas neptunium ATCC 15444 4287167 YP_759551.1 CDS pdxH NC_008358.1 846461 847120 D identified by match to protein family HMM PF01243; match to protein family HMM TIGR00558; pyridoxamine 5'-phosphate oxidase 846461..847120 Hyphomonas neptunium ATCC 15444 4288939 YP_759552.1 CDS HNE_0825 NC_008358.1 847137 847586 R identified by similarity to GB:CAC47451.1; hypothetical protein complement(847137..847586) Hyphomonas neptunium ATCC 15444 4289718 YP_759553.1 CDS HNE_0826 NC_008358.1 847870 848253 D hypothetical protein 847870..848253 Hyphomonas neptunium ATCC 15444 4287442 YP_759554.1 CDS HNE_0827 NC_008358.1 848319 849167 R identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein complement(848319..849167) Hyphomonas neptunium ATCC 15444 4289037 YP_759555.1 CDS alkK NC_008358.1 849439 851064 D activates fatty acids by binding to coenzyme A; putative acyl-CoA synthetase 849439..851064 Hyphomonas neptunium ATCC 15444 4287114 YP_759556.1 CDS HNE_0829 NC_008358.1 851073 851420 D identified by similarity to GB:BAC46552.1; hypothetical protein 851073..851420 Hyphomonas neptunium ATCC 15444 4290267 YP_759557.1 CDS HNE_0830 NC_008358.1 851485 852393 D hypothetical protein 851485..852393 Hyphomonas neptunium ATCC 15444 4289133 YP_759558.1 CDS HNE_0831 NC_008358.1 852397 852870 R putative lipoprotein complement(852397..852870) Hyphomonas neptunium ATCC 15444 4287011 YP_759559.1 CDS HNE_0832 NC_008358.1 853007 853483 R identified by match to protein family HMM PF03061; thioesterase family protein complement(853007..853483) Hyphomonas neptunium ATCC 15444 4289608 YP_759560.1 CDS csaA NC_008358.1 853480 853851 R identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222; export-related chaperone CsaA complement(853480..853851) Hyphomonas neptunium ATCC 15444 4287745 YP_759561.1 CDS HNE_0834 NC_008358.1 853851 854618 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(853851..854618) Hyphomonas neptunium ATCC 15444 4290465 YP_759562.1 CDS HNE_0835 NC_008358.1 854792 855199 D hypothetical protein 854792..855199 Hyphomonas neptunium ATCC 15444 4289455 YP_759563.1 CDS HNE_0836 NC_008358.1 855275 857278 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 855275..857278 Hyphomonas neptunium ATCC 15444 4288896 YP_759564.1 CDS HNE_0837 NC_008358.1 857385 857879 D identified by match to protein family HMM PF03795; YCII domain-containing protein 857385..857879 Hyphomonas neptunium ATCC 15444 4288241 YP_759565.1 CDS HNE_0838 NC_008358.1 857889 859553 R identified by similarity to GB:CAG76557.1; match to protein family HMM PF03235; match to protein family HMM PF07510; hypothetical protein complement(857889..859553) Hyphomonas neptunium ATCC 15444 4287044 YP_759566.1 CDS HNE_0839 NC_008358.1 859665 860498 D identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 859665..860498 Hyphomonas neptunium ATCC 15444 4289747 YP_759567.1 CDS HNE_0840 NC_008358.1 860733 862088 D identified by match to protein family HMM PF00563; EAL domain-containing protein 860733..862088 Hyphomonas neptunium ATCC 15444 4288641 YP_759568.1 CDS HNE_0841 NC_008358.1 862167 862739 D putative lipoprotein 862167..862739 Hyphomonas neptunium ATCC 15444 4290527 YP_759569.1 CDS HNE_0842 NC_008358.1 862787 863638 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460; HAD family hydrolase 862787..863638 Hyphomonas neptunium ATCC 15444 4287237 YP_759570.1 CDS HNE_0843 NC_008358.1 863744 864175 D identified by match to protein family HMM PF01575; MaoC domain-containing protein 863744..864175 Hyphomonas neptunium ATCC 15444 4288671 YP_759571.1 CDS ribF NC_008358.1 864175 865101 D identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF 864175..865101 Hyphomonas neptunium ATCC 15444 4289797 YP_759572.1 CDS HNE_0846 NC_008358.1 865245 865976 R hypothetical protein complement(865245..865976) Hyphomonas neptunium ATCC 15444 4288904 YP_759573.1 CDS HNE_0845 NC_008358.1 865272 865823 D hypothetical protein 865272..865823 Hyphomonas neptunium ATCC 15444 4290436 YP_759574.1 CDS HNE_0847 NC_008358.1 866096 866560 D hypothetical protein 866096..866560 Hyphomonas neptunium ATCC 15444 4289369 YP_759575.1 CDS HNE_0848 NC_008358.1 866600 866722 R hypothetical protein complement(866600..866722) Hyphomonas neptunium ATCC 15444 4290487 YP_759576.1 CDS ileS NC_008358.1 866764 869805 D identified by match to protein family HMM PF00133; match to protein family HMM TIGR00392; isoleucyl-tRNA synthetase 866764..869805 Hyphomonas neptunium ATCC 15444 4289620 YP_759577.1 CDS lspA1 NC_008358.1 869897 870433 D identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 869897..870433 Hyphomonas neptunium ATCC 15444 4289827 YP_759578.1 CDS HNE_0851 NC_008358.1 870468 870965 D identified by similarity to GB:AAK22684.1; putative lipoprotein 870468..870965 Hyphomonas neptunium ATCC 15444 4289545 YP_759579.1 CDS HNE_0852 NC_008358.1 871036 872394 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; insulinase family protein 871036..872394 Hyphomonas neptunium ATCC 15444 4289281 YP_759580.1 CDS HNE_0853 NC_008358.1 872394 873809 D identified by match to protein family HMM PF05193; M16 family peptidase 872394..873809 Hyphomonas neptunium ATCC 15444 4288062 YP_759581.1 CDS HNE_0854 NC_008358.1 874144 875094 R identified by similarity to GB:AAK23431.1; hypothetical protein complement(874144..875094) Hyphomonas neptunium ATCC 15444 4287777 YP_759582.1 CDS HNE_0855 NC_008358.1 875094 875705 R identified by match to protein family HMM PF01966; HD domain-containing protein complement(875094..875705) Hyphomonas neptunium ATCC 15444 4287530 YP_759583.1 CDS HNE_0856 NC_008358.1 875913 876062 D hypothetical protein 875913..876062 Hyphomonas neptunium ATCC 15444 4287435 YP_759584.1 CDS HNE_0857 NC_008358.1 876077 877198 R catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(876077..877198) Hyphomonas neptunium ATCC 15444 4290544 YP_759585.1 CDS HNE_0858 NC_008358.1 877327 877605 R identified by similarity to GB:AAR33517.1; hypothetical protein complement(877327..877605) Hyphomonas neptunium ATCC 15444 4289461 YP_759586.1 CDS HNE_0859 NC_008358.1 877602 877805 R putative lipoprotein complement(877602..877805) Hyphomonas neptunium ATCC 15444 4289483 YP_759587.1 CDS tag NC_008358.1 877802 878383 R identified by similarity to SP:P05100; match to protein family HMM PF03352; DNA-3-methyladenine glycosylase I complement(877802..878383) Hyphomonas neptunium ATCC 15444 4288756 YP_759588.1 CDS HNE_0861 NC_008358.1 878376 879191 R identified by match to protein family HMM PF01571; putative aminomethyltransferase complement(878376..879191) Hyphomonas neptunium ATCC 15444 4287654 YP_759589.1 CDS HNE_0862 NC_008358.1 879289 880629 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 879289..880629 Hyphomonas neptunium ATCC 15444 4289958 YP_759590.1 CDS HNE_0863 NC_008358.1 880658 882073 D identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein 880658..882073 Hyphomonas neptunium ATCC 15444 4290146 YP_759591.1 CDS fcs2 NC_008358.1 882196 884064 D catalyzes the conversion of ferulic acid to feruloyl-CoA; feruloyl-CoA synthase 882196..884064 Hyphomonas neptunium ATCC 15444 4288286 YP_759592.1 CDS HNE_0865 NC_008358.1 884345 885892 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 884345..885892 Hyphomonas neptunium ATCC 15444 4289842 YP_759593.1 CDS HNE_0866 NC_008358.1 885959 888049 R identified by match to protein family HMM PF00326; match to protein family HMM PF07676; S9A/B/C family peptidase complement(885959..888049) Hyphomonas neptunium ATCC 15444 4289085 YP_759594.1 CDS HNE_0867 NC_008358.1 888225 888878 R identified by similarity to GB:AAQ65624.1; hypothetical protein complement(888225..888878) Hyphomonas neptunium ATCC 15444 4288721 YP_759595.1 CDS HNE_0868 NC_008358.1 888863 889246 R hypothetical protein complement(888863..889246) Hyphomonas neptunium ATCC 15444 4290212 YP_759596.1 CDS HNE_0869 NC_008358.1 889593 891374 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 889593..891374 Hyphomonas neptunium ATCC 15444 4288097 YP_759597.1 CDS HNE_0870 NC_008358.1 891722 892585 D hypothetical protein 891722..892585 Hyphomonas neptunium ATCC 15444 4286994 YP_759598.1 CDS HNE_0871 NC_008358.1 892661 893230 R identified by similarity to GB:AAK23529.1; match to protein family HMM PF01936; hypothetical protein complement(892661..893230) Hyphomonas neptunium ATCC 15444 4290344 YP_759599.1 CDS rpoZ NC_008358.1 893387 893737 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 893387..893737 Hyphomonas neptunium ATCC 15444 4289083 YP_759600.1 CDS HNE_0873 NC_008358.1 893746 896013 D identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; RelA/SpoT family protein 893746..896013 Hyphomonas neptunium ATCC 15444 4287403 YP_759601.1 CDS pyrE NC_008358.1 896003 896584 D identified by match to protein family HMM PF00156; match to protein family HMM TIGR01367; orotate phosphoribosyltransferase 896003..896584 Hyphomonas neptunium ATCC 15444 4287286 YP_759602.1 CDS pdxJ NC_008358.1 896584 897327 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 896584..897327 Hyphomonas neptunium ATCC 15444 4289682 YP_759603.1 CDS HNE_0876 NC_008358.1 897324 897737 D identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier-protein) synthase 897324..897737 Hyphomonas neptunium ATCC 15444 4287182 YP_759604.1 CDS rnc NC_008358.1 897785 898489 D identified by match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 897785..898489 Hyphomonas neptunium ATCC 15444 4287968 YP_759605.1 CDS era NC_008358.1 898486 899433 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 898486..899433 Hyphomonas neptunium ATCC 15444 4289817 YP_759606.1 CDS recO NC_008358.1 899440 900171 D identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 899440..900171 Hyphomonas neptunium ATCC 15444 4289688 YP_759607.1 CDS HNE_0880 NC_008358.1 900178 900864 R identified by match to protein family HMM PF06904; extensin domain-containing protein complement(900178..900864) Hyphomonas neptunium ATCC 15444 4287930 YP_759608.1 CDS parC NC_008358.1 900998 903232 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 900998..903232 Hyphomonas neptunium ATCC 15444 4289236 YP_759609.1 CDS HNE_0882 NC_008358.1 903504 904253 R identified by match to protein family HMM PF02146; Sir2 family transcriptional regulator complement(903504..904253) Hyphomonas neptunium ATCC 15444 4287764 YP_759610.1 CDS HNE_0883 NC_008358.1 904287 904757 R identified by similarity to GB:AAS71142.1; hypothetical protein complement(904287..904757) Hyphomonas neptunium ATCC 15444 4289521 YP_759611.1 CDS HNE_0884 NC_008358.1 904811 905146 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 904811..905146 Hyphomonas neptunium ATCC 15444 4288898 YP_759612.1 CDS HNE_0885 NC_008358.1 905143 905844 R identified by match to protein family HMM PF01988; hypothetical protein complement(905143..905844) Hyphomonas neptunium ATCC 15444 4289364 YP_759613.1 CDS HNE_0886 NC_008358.1 905991 906554 D identified by match to protein family HMM PF04011; LemA family protein 905991..906554 Hyphomonas neptunium ATCC 15444 4287366 YP_759614.1 CDS HNE_0887 NC_008358.1 906615 906968 D putative lipoprotein 906615..906968 Hyphomonas neptunium ATCC 15444 4287571 YP_759615.1 CDS HNE_0888 NC_008358.1 907043 907678 D putative lipoprotein 907043..907678 Hyphomonas neptunium ATCC 15444 4290113 YP_759616.1 CDS HNE_0889 NC_008358.1 907685 908821 R identified by match to protein family HMM PF00155; match to protein family HMM PF01212; classes I and II aminotransferase complement(907685..908821) Hyphomonas neptunium ATCC 15444 4288373 YP_759617.1 CDS HNE_0890 NC_008358.1 908840 910423 R identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786; TRAP dicarboxylate transporter subunit DctM complement(908840..910423) Hyphomonas neptunium ATCC 15444 4289626 YP_759618.1 CDS HNE_0891 NC_008358.1 910413 911084 R identified by match to protein family HMM PF04290; TRAP dicarboxylate transporter subunit DctQ complement(910413..911084) Hyphomonas neptunium ATCC 15444 4289736 YP_759619.1 CDS HNE_0892 NC_008358.1 911103 912212 R identified by match to protein family HMM PF03480; match to protein family HMM TIGR01409; solute-binding family 7 protein complement(911103..912212) Hyphomonas neptunium ATCC 15444 4288323 YP_759620.1 CDS ate NC_008358.1 912283 913041 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(912283..913041) Hyphomonas neptunium ATCC 15444 4290206 YP_759621.1 CDS HNE_0894 NC_008358.1 913147 913827 R identified by match to protein family HMM PF00691; putative chemotaxis protein MotB complement(913147..913827) Hyphomonas neptunium ATCC 15444 4289680 YP_759622.1 CDS HNE_0895 NC_008358.1 913961 914827 D identified by similarity to SP:O33730; match to protein family HMM PF03446; 3-hydroxyisobutyrate dehydrogenase 913961..914827 Hyphomonas neptunium ATCC 15444 4289315 YP_759623.1 CDS HNE_0896 NC_008358.1 914827 915840 D identified by similarity to GB:AAS81418.1; match to protein family HMM PF04087; match to protein family HMM TIGR00341; hypothetical protein 914827..915840 Hyphomonas neptunium ATCC 15444 4287024 YP_759624.1 CDS HNE_0897 NC_008358.1 916005 916442 D identified by match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 916005..916442 Hyphomonas neptunium ATCC 15444 4287897 YP_759625.1 CDS hemB NC_008358.1 916471 917466 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(916471..917466) Hyphomonas neptunium ATCC 15444 4288743 YP_759626.1 CDS HNE_0899 NC_008358.1 917498 918103 R identified by match to protein family HMM PF00583; acetyltransferase complement(917498..918103) Hyphomonas neptunium ATCC 15444 4287743 YP_759627.1 CDS acad8 NC_008358.1 918103 919242 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 918103..919242 Hyphomonas neptunium ATCC 15444 4289366 YP_759628.1 CDS HNE_0901 NC_008358.1 919253 920101 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(919253..920101) Hyphomonas neptunium ATCC 15444 4287970 YP_759629.1 CDS HNE_0902 NC_008358.1 920285 921253 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 920285..921253 Hyphomonas neptunium ATCC 15444 4289517 YP_759630.1 CDS HNE_0903 NC_008358.1 921326 921715 D identified by match to protein family HMM PF00042; globin domain-containing protein 921326..921715 Hyphomonas neptunium ATCC 15444 4288547 YP_759631.1 CDS HNE_0904 NC_008358.1 921754 922308 D identified by match to protein family HMM PF01292; nickel-dependent hydrogenase, b-type cytochrome subunit 921754..922308 Hyphomonas neptunium ATCC 15444 4289443 YP_759632.1 CDS HNE_0905 NC_008358.1 922391 923230 D identified by match to protein family HMM PF02668; TauD/TfdA family dioxygenase 922391..923230 Hyphomonas neptunium ATCC 15444 4289713 YP_759633.1 CDS HNE_0906 NC_008358.1 923259 923693 R identified by similarity to GB:AAN34286.1; hypothetical protein complement(923259..923693) Hyphomonas neptunium ATCC 15444 4287703 YP_759634.1 CDS HNE_0907 NC_008358.1 923676 924758 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 923676..924758 Hyphomonas neptunium ATCC 15444 4289670 YP_759635.1 CDS HNE_0908 NC_008358.1 924794 925138 D identified by match to protein family HMM PF00893; SMR family multidrug efflux pump 924794..925138 Hyphomonas neptunium ATCC 15444 4289453 YP_759636.1 CDS HNE_0909 NC_008358.1 925389 925895 D putative transcriptional regulatory protein 925389..925895 Hyphomonas neptunium ATCC 15444 4287157 YP_759637.1 CDS HNE_0910 NC_008358.1 926054 926563 D identified by similarity to GB:AAN68336.1; match to protein family HMM PF07566; hypothetical protein 926054..926563 Hyphomonas neptunium ATCC 15444 4289304 YP_759638.1 CDS HNE_0911 NC_008358.1 926726 927391 D hypothetical protein 926726..927391 Hyphomonas neptunium ATCC 15444 4289000 YP_759639.1 CDS HNE_0912 NC_008358.1 927397 927954 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(927397..927954) Hyphomonas neptunium ATCC 15444 4289031 YP_759640.1 CDS mutL NC_008358.1 928151 930055 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 928151..930055 Hyphomonas neptunium ATCC 15444 4290517 YP_759641.1 CDS HNE_0914 NC_008358.1 930139 931308 D identified by match to protein family HMM PF00144; beta-lactamase 930139..931308 Hyphomonas neptunium ATCC 15444 4289393 YP_759642.1 CDS HNE_0915 NC_008358.1 931305 932672 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(931305..932672) Hyphomonas neptunium ATCC 15444 4289391 YP_759643.1 CDS HNE_0916 NC_008358.1 932772 934175 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; FAD-binding oxidoreductase complement(932772..934175) Hyphomonas neptunium ATCC 15444 4290536 YP_759644.1 CDS HNE_0917 NC_008358.1 934529 934849 D hypothetical protein 934529..934849 Hyphomonas neptunium ATCC 15444 4289859 YP_759645.1 CDS HNE_0918 NC_008358.1 934938 935561 R identified by match to protein family HMM PF04299; putative FMN-binding protein complement(934938..935561) Hyphomonas neptunium ATCC 15444 4288895 YP_759646.1 CDS HNE_0919 NC_008358.1 935626 936954 R beta-lactamase family protein complement(935626..936954) Hyphomonas neptunium ATCC 15444 4290219 YP_759647.1 CDS xseA NC_008358.1 937061 938488 R identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit complement(937061..938488) Hyphomonas neptunium ATCC 15444 4287309 YP_759648.1 CDS HNE_0921 NC_008358.1 938709 939557 D identified by similarity to SP:P64840; hypothetical protein 938709..939557 Hyphomonas neptunium ATCC 15444 4287248 YP_759649.1 CDS purD NC_008358.1 939626 940918 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 939626..940918 Hyphomonas neptunium ATCC 15444 4288963 YP_759650.1 CDS HNE_0923 NC_008358.1 940915 941976 R identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase complement(940915..941976) Hyphomonas neptunium ATCC 15444 4288846 YP_759651.1 CDS HNE_0924 NC_008358.1 942005 942793 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(942005..942793) Hyphomonas neptunium ATCC 15444 4287478 YP_759652.1 CDS HNE_0926 NC_008358.1 942756 943454 D hypothetical protein 942756..943454 Hyphomonas neptunium ATCC 15444 4289502 YP_759653.1 CDS HNE_0925 NC_008358.1 942807 943343 R hypothetical protein complement(942807..943343) Hyphomonas neptunium ATCC 15444 4288776 YP_759654.1 CDS HNE_0927 NC_008358.1 943521 944183 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 943521..944183 Hyphomonas neptunium ATCC 15444 4287274 YP_759655.1 CDS HNE_0928 NC_008358.1 944187 944435 R identified by similarity to GB:AAK24163.1; hypothetical protein complement(944187..944435) Hyphomonas neptunium ATCC 15444 4289894 YP_759656.1 CDS HNE_0929 NC_008358.1 944488 945078 R identified by similarity to GB:AAM71598.1; hypothetical protein complement(944488..945078) Hyphomonas neptunium ATCC 15444 4289811 YP_759657.1 CDS HNE_0930 NC_008358.1 945193 946281 D identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 945193..946281 Hyphomonas neptunium ATCC 15444 4290535 YP_759658.1 CDS HNE_0931 NC_008358.1 946329 947519 D identified by match to protein family HMM PF07690; major facilitator family transporter 946329..947519 Hyphomonas neptunium ATCC 15444 4287823 YP_759659.1 CDS HNE_0932 NC_008358.1 947564 948472 D identified by similarity to GB:BAC47989.1; hypothetical protein 947564..948472 Hyphomonas neptunium ATCC 15444 4290177 YP_759660.1 CDS HNE_0933 NC_008358.1 948469 948828 D identified by similarity to GB:AAK22977.1; hypothetical protein 948469..948828 Hyphomonas neptunium ATCC 15444 4287164 YP_759661.1 CDS HNE_0934 NC_008358.1 948889 950166 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 948889..950166 Hyphomonas neptunium ATCC 15444 4288384 YP_759662.1 CDS HNE_0935 NC_008358.1 950290 951138 D identified by match to protein family HMM PF00691; OmpA family protein 950290..951138 Hyphomonas neptunium ATCC 15444 4289540 YP_759663.1 CDS HNE_0936 NC_008358.1 951142 952212 R identified by similarity to GB:AAK25051.1; hypothetical protein complement(951142..952212) Hyphomonas neptunium ATCC 15444 4288217 YP_759664.1 CDS HNE_0937 NC_008358.1 952234 952977 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(952234..952977) Hyphomonas neptunium ATCC 15444 4288347 YP_759665.1 CDS HNE_0938 NC_008358.1 952974 954296 R identified by match to protein family HMM PF00067; cytochrome P450 family protein complement(952974..954296) Hyphomonas neptunium ATCC 15444 4289599 YP_759666.1 CDS HNE_0939 NC_008358.1 954375 955712 R identified by match to protein family HMM PF00067; cytochrome P450 family protein complement(954375..955712) Hyphomonas neptunium ATCC 15444 4287651 YP_759667.1 CDS HNE_0940 NC_008358.1 955746 956663 R identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; pseudouridine synthase rsuA family protein complement(955746..956663) Hyphomonas neptunium ATCC 15444 4288103 YP_759668.1 CDS HNE_0941 NC_008358.1 956688 957089 R identified by similarity to GB:AAK22673.1; hypothetical protein complement(956688..957089) Hyphomonas neptunium ATCC 15444 4289486 YP_759669.1 CDS HNE_0942 NC_008358.1 957380 958327 D flagellar biosynthesis protein FlhF-like protein 957380..958327 Hyphomonas neptunium ATCC 15444 4288864 YP_759670.1 CDS motR NC_008358.1 958332 959168 D identified by similarity to GB:AAC62540.2; match to protein family HMM PF01656; motR protein 958332..959168 Hyphomonas neptunium ATCC 15444 4288535 YP_759671.1 CDS ctrA NC_008358.1 959302 960015 D identified by similarity to SP:Q45994; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator CtrA 959302..960015 Hyphomonas neptunium ATCC 15444 4288447 YP_759672.1 CDS rnhA NC_008358.1 960110 960562 R identified by match to protein family HMM PF00075; ribonuclease H complement(960110..960562) Hyphomonas neptunium ATCC 15444 4289792 YP_759673.1 CDS HNE_0946 NC_008358.1 960606 961124 R putative lipoprotein complement(960606..961124) Hyphomonas neptunium ATCC 15444 4290001 YP_759674.1 CDS thrB NC_008358.1 961193 962179 R identified by similarity to SP:P29364; match to protein family HMM PF01636; match to protein family HMM TIGR00938; homoserine kinase complement(961193..962179) Hyphomonas neptunium ATCC 15444 4288930 YP_759675.1 CDS HNE_0948 NC_008358.1 962191 963690 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter complement(962191..963690) Hyphomonas neptunium ATCC 15444 4290330 YP_759676.1 CDS HNE_0949 NC_008358.1 963728 965227 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(963728..965227) Hyphomonas neptunium ATCC 15444 4287370 YP_759677.1 CDS HNE_0950 NC_008358.1 965497 967080 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 965497..967080 Hyphomonas neptunium ATCC 15444 4290478 YP_759678.1 CDS HNE_0952 NC_008358.1 967808 967906 R hypothetical protein complement(967808..967906) Hyphomonas neptunium ATCC 15444 4288840 YP_759679.1 CDS map1 NC_008358.1 967971 968792 R identified by match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(967971..968792) Hyphomonas neptunium ATCC 15444 4288949 YP_759680.1 CDS HNE_0954 NC_008358.1 968911 970245 D identified by match to protein family HMM PF00144; carboxylesterase 968911..970245 Hyphomonas neptunium ATCC 15444 4288422 YP_759681.1 CDS HNE_0955 NC_008358.1 970242 971000 D identified by match to protein family HMM PF00994; molybdopterin-binding domain-containing protein 970242..971000 Hyphomonas neptunium ATCC 15444 4287961 YP_759682.1 CDS HNE_0956 NC_008358.1 971099 971584 D hypothetical protein 971099..971584 Hyphomonas neptunium ATCC 15444 4290156 YP_759683.1 CDS HNE_0957 NC_008358.1 971665 972447 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 971665..972447 Hyphomonas neptunium ATCC 15444 4289512 YP_759684.1 CDS HNE_0958 NC_008358.1 972493 973269 R identified by similarity to SP:Q7XA48; match to protein family HMM PF02900; extradiol-type ring-opening dioxygenase complement(972493..973269) Hyphomonas neptunium ATCC 15444 4288777 YP_759685.1 CDS bktB NC_008358.1 973446 974657 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 973446..974657 Hyphomonas neptunium ATCC 15444 4288300 YP_759686.1 CDS HNE_0960 NC_008358.1 974869 975078 D identified by match to protein family HMM PF00313; cold shock protein 974869..975078 Hyphomonas neptunium ATCC 15444 4286986 YP_759687.1 CDS HNE_0961 NC_008358.1 975176 975871 R identified by similarity to GB:AAK23269.1; hypothetical protein complement(975176..975871) Hyphomonas neptunium ATCC 15444 4287338 YP_759688.1 CDS HNE_0962 NC_008358.1 975967 977412 R identified by similarity to PRF:2211222A; match to protein family HMM PF00939; match to protein family HMM TIGR00785; sodium:sulfate symporter family protein complement(975967..977412) Hyphomonas neptunium ATCC 15444 4288345 YP_759689.1 CDS HNE_0964 NC_008358.1 977672 978865 D identified by match to protein family HMM PF00571; match to protein family HMM PF04982; HPP family/CBS domain-containing protein 977672..978865 Hyphomonas neptunium ATCC 15444 4290282 YP_759690.1 CDS HNE_0965 NC_008358.1 978966 979592 R identified by similarity to SP:P41407; match to protein family HMM PF02525; match to protein family HMM PF03358; acyl carrier protein phosphodiesterase complement(978966..979592) Hyphomonas neptunium ATCC 15444 4288199 YP_759691.1 CDS HNE_0966 NC_008358.1 979736 981010 R hypothetical protein complement(979736..981010) Hyphomonas neptunium ATCC 15444 4288309 YP_759692.1 CDS HNE_0967 NC_008358.1 980928 982763 D identified by match to protein family HMM PF00512; histidine kinase A domain-containing protein 980928..982763 Hyphomonas neptunium ATCC 15444 4288376 YP_759693.1 CDS HNE_0968 NC_008358.1 982784 983650 R identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin family protein complement(982784..983650) Hyphomonas neptunium ATCC 15444 4288137 YP_759694.1 CDS HNE_0969 NC_008358.1 983736 983873 D hypothetical protein 983736..983873 Hyphomonas neptunium ATCC 15444 4288131 YP_759695.1 CDS HNE_0970 NC_008358.1 983770 985080 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 983770..985080 Hyphomonas neptunium ATCC 15444 4290039 YP_759696.1 CDS ald NC_008358.1 985203 986324 R identified by match to protein family HMM PF01262; match to protein family HMM PF02826; match to protein family HMM PF05222; match to protein family HMM TIGR00518; alanine dehydrogenase complement(985203..986324) Hyphomonas neptunium ATCC 15444 4288472 YP_759697.1 CDS HNE_0972 NC_008358.1 986296 986505 D hypothetical protein 986296..986505 Hyphomonas neptunium ATCC 15444 4287616 YP_759698.1 CDS HNE_0973 NC_008358.1 986483 987148 R identified by similarity to GB:AAK24625.1; match to protein family HMM TIGR02001; hypothetical protein complement(986483..987148) Hyphomonas neptunium ATCC 15444 4288559 YP_759699.1 CDS HNE_0974 NC_008358.1 987352 988164 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase complement(987352..988164) Hyphomonas neptunium ATCC 15444 4290224 YP_759700.1 CDS HNE_0975 NC_008358.1 988303 988761 D identified by match to protein family HMM PF04940; BLUF domain-containing protein 988303..988761 Hyphomonas neptunium ATCC 15444 4289915 YP_759701.1 CDS parE NC_008358.1 988841 990838 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(988841..990838) Hyphomonas neptunium ATCC 15444 4287106 YP_759702.1 CDS lon NC_008358.1 991154 993574 D identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM TIGR00763; ATP-dependent protease La 991154..993574 Hyphomonas neptunium ATCC 15444 4287388 YP_759703.1 CDS HNE_0979 NC_008358.1 993902 994945 D identified by similarity to GB:BAD78361.1; match to protein family HMM PF03724; hypothetical protein 993902..994945 Hyphomonas neptunium ATCC 15444 4289279 YP_759704.1 CDS HNE_0980 NC_008358.1 995032 996513 D identified by match to protein family HMM PF00743; putative 4-hydroxyacetophenone monooxygenase 995032..996513 Hyphomonas neptunium ATCC 15444 4288117 YP_759705.1 CDS HNE_0981 NC_008358.1 996564 997409 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(996564..997409) Hyphomonas neptunium ATCC 15444 4288542 YP_759706.1 CDS gpsA NC_008358.1 997477 998487 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(997477..998487) Hyphomonas neptunium ATCC 15444 4287404 YP_759707.1 CDS HNE_0983 NC_008358.1 998673 999278 D identified by similarity to GB:AAK22621.1; hypothetical protein 998673..999278 Hyphomonas neptunium ATCC 15444 4289967 YP_759708.1 CDS HNE_0984 NC_008358.1 999271 1000788 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(999271..1000788) Hyphomonas neptunium ATCC 15444 4287373 YP_759709.1 CDS dhlA NC_008358.1 1000907 1001905 R identified by similarity to SP:P22643; match to protein family HMM PF00561; haloalkane dehalogenase complement(1000907..1001905) Hyphomonas neptunium ATCC 15444 4288611 YP_759710.1 CDS HNE_0986 NC_008358.1 1002012 1002659 R identified by match to protein family HMM PF01810; LysE family translocator protein complement(1002012..1002659) Hyphomonas neptunium ATCC 15444 4289707 YP_759711.1 CDS HNE_0987 NC_008358.1 1002664 1003272 R identified by similarity to SP:Q51948; match to protein family HMM PF01323; putative 2-hydroxychromene-2-carboxylate isomerase complement(1002664..1003272) Hyphomonas neptunium ATCC 15444 4289118 YP_759712.1 CDS HNE_0988 NC_008358.1 1003430 1004659 D identified by match to protein family HMM PF01494; monooxygenase 1003430..1004659 Hyphomonas neptunium ATCC 15444 4287426 YP_759713.1 CDS HNE_0989 NC_008358.1 1004664 1005026 D hypothetical protein 1004664..1005026 Hyphomonas neptunium ATCC 15444 4289198 YP_759714.1 CDS arsH NC_008358.1 1005055 1005777 R identified by match to protein family HMM PF03358; match to protein family HMM TIGR02690; arsenical resistance protein ArsH complement(1005055..1005777) Hyphomonas neptunium ATCC 15444 4289193 YP_759715.1 CDS arsC NC_008358.1 1005770 1006189 R identified by match to protein family HMM PF03960; match to protein family HMM TIGR00014; arsenate reductase complement(1005770..1006189) Hyphomonas neptunium ATCC 15444 4289169 YP_759716.1 CDS HNE_0992 NC_008358.1 1006203 1007228 R identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832; putative arsenical-resistance protein complement(1006203..1007228) Hyphomonas neptunium ATCC 15444 4287172 YP_759717.1 CDS HNE_0993 NC_008358.1 1007299 1007637 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(1007299..1007637) Hyphomonas neptunium ATCC 15444 4289567 YP_759718.1 CDS HNE_0994 NC_008358.1 1007756 1008850 D identified by match to protein family HMM PF07690; major facilitator family transporter 1007756..1008850 Hyphomonas neptunium ATCC 15444 4290443 YP_759719.1 CDS HNE_0995 NC_008358.1 1008892 1009065 D hypothetical protein 1008892..1009065 Hyphomonas neptunium ATCC 15444 4288794 YP_759720.1 CDS HNE_0996 NC_008358.1 1009084 1009821 D identified by similarity to GB:BAC48148.1; hypothetical protein 1009084..1009821 Hyphomonas neptunium ATCC 15444 4288876 YP_759721.1 CDS HNE_0997 NC_008358.1 1009900 1010748 R identified by match to protein family HMM PF00582; universal stress protein family protein complement(1009900..1010748) Hyphomonas neptunium ATCC 15444 4287293 YP_759722.1 CDS HNE_0998 NC_008358.1 1010761 1012251 R identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740; sulfate permease complement(1010761..1012251) Hyphomonas neptunium ATCC 15444 4290326 YP_759723.1 CDS HNE_0999 NC_008358.1 1012434 1012844 R hypothetical protein complement(1012434..1012844) Hyphomonas neptunium ATCC 15444 4287733 YP_759724.1 CDS crcB NC_008358.1 1013179 1013562 D identified by match to protein family HMM PF02537; match to protein family HMM TIGR00494; crcB protein 1013179..1013562 Hyphomonas neptunium ATCC 15444 4287215 YP_759725.1 CDS HNE_1002 NC_008358.1 1013559 1014608 D identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase 1013559..1014608 Hyphomonas neptunium ATCC 15444 4287148 YP_759726.1 CDS HNE_1003 NC_008358.1 1014611 1015324 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD family hydrolase 1014611..1015324 Hyphomonas neptunium ATCC 15444 4290233 YP_759727.1 CDS HNE_1004 NC_008358.1 1015423 1015908 D hypothetical protein 1015423..1015908 Hyphomonas neptunium ATCC 15444 4288850 YP_759728.1 CDS HNE_1005 NC_008358.1 1015972 1016700 D identified by match to protein family HMM PF07542; ATP12 chaperone family protein 1015972..1016700 Hyphomonas neptunium ATCC 15444 4289878 YP_759729.1 CDS HNE_1006 NC_008358.1 1016745 1017314 D hypothetical protein 1016745..1017314 Hyphomonas neptunium ATCC 15444 4287698 YP_759730.1 CDS HNE_1007 NC_008358.1 1017471 1019003 D identified by similarity to SP:P05166; match to protein family HMM PF01039; putative propionyl-CoA carboxylase subunit beta 1017471..1019003 Hyphomonas neptunium ATCC 15444 4287892 YP_759731.1 CDS HNE_1008 NC_008358.1 1019149 1021233 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 1019149..1021233 Hyphomonas neptunium ATCC 15444 4289190 YP_759732.1 CDS HNE_1009 NC_008358.1 1021265 1022014 D identified by similarity to GB:AAL94502.1; hypothetical protein 1021265..1022014 Hyphomonas neptunium ATCC 15444 4289533 YP_759733.1 CDS HNE_1010 NC_008358.1 1022167 1023126 D hypothetical protein 1022167..1023126 Hyphomonas neptunium ATCC 15444 4289951 YP_759734.1 CDS HNE_1011 NC_008358.1 1023565 1024941 D identified by similarity to GB:CAD31544.1; hypothetical protein 1023565..1024941 Hyphomonas neptunium ATCC 15444 4289662 YP_759735.1 CDS HNE_1012 NC_008358.1 1024954 1025727 D identified by similarity to GB:CAD31543.1; hypothetical protein 1024954..1025727 Hyphomonas neptunium ATCC 15444 4287477 YP_759736.1 CDS HNE_1013 NC_008358.1 1025764 1026210 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1025764..1026210) Hyphomonas neptunium ATCC 15444 4287671 YP_759737.1 CDS HNE_1014 NC_008358.1 1026338 1026997 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 1026338..1026997 Hyphomonas neptunium ATCC 15444 4288413 YP_759738.1 CDS HNE_1015 NC_008358.1 1026913 1027347 D identified by similarity to GB:BAD58667.1; hypothetical protein 1026913..1027347 Hyphomonas neptunium ATCC 15444 4287856 YP_759739.1 CDS HNE_1016 NC_008358.1 1027360 1027842 D identified by match to protein family HMM PF06983; 3-demethylubiquinone-9 3-methyltransferase 1027360..1027842 Hyphomonas neptunium ATCC 15444 4287821 YP_759740.1 CDS HNE_1017 NC_008358.1 1027839 1028048 D identified by similarity to PIR:H95898; hypothetical protein 1027839..1028048 Hyphomonas neptunium ATCC 15444 4288072 YP_759741.1 CDS HNE_1018 NC_008358.1 1028077 1028571 D identified by match to protein family HMM PF00903; glyoxalase family protein 1028077..1028571 Hyphomonas neptunium ATCC 15444 4288482 YP_759742.1 CDS HNE_1019 NC_008358.1 1028586 1029302 D identified by similarity to GB:BAB54219.1; hypothetical protein 1028586..1029302 Hyphomonas neptunium ATCC 15444 4290074 YP_759743.1 CDS HNE_1020 NC_008358.1 1029563 1030441 D identified by similarity to GB:AAL27289.1; putative outer membrane protein 1029563..1030441 Hyphomonas neptunium ATCC 15444 4287878 YP_759744.1 CDS HNE_1021 NC_008358.1 1030514 1032376 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; polysaccharide biosynthesis protein complement(1030514..1032376) Hyphomonas neptunium ATCC 15444 4288544 YP_759745.1 CDS HNE_1023 NC_008358.1 1032780 1033562 D identified by match to protein family HMM PF04402; outer membrane protein 1032780..1033562 Hyphomonas neptunium ATCC 15444 4288207 YP_759746.1 CDS HNE_1024 NC_008358.1 1033567 1034595 R identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; KpsF/GutQ family sugar isomerase complement(1033567..1034595) Hyphomonas neptunium ATCC 15444 4287639 YP_759747.1 CDS HNE_1025 NC_008358.1 1034657 1035985 R identified by match to protein family HMM PF00768; putative D-alanyl-D-alanine carboxypeptidase complement(1034657..1035985) Hyphomonas neptunium ATCC 15444 4287796 YP_759748.1 CDS HNE_1026 NC_008358.1 1036224 1036640 D identified by match to protein family HMM TIGR01985; phasin 1036224..1036640 Hyphomonas neptunium ATCC 15444 4290100 YP_759749.1 CDS HNE_1027 NC_008358.1 1036874 1038190 D identified by match to protein family HMM PF07719; hypothetical protein 1036874..1038190 Hyphomonas neptunium ATCC 15444 4287613 YP_759750.1 CDS HNE_1028 NC_008358.1 1038225 1038626 D identified by similarity to GB:AAV82008.1; hypothetical protein 1038225..1038626 Hyphomonas neptunium ATCC 15444 4289563 YP_759751.1 CDS clpS NC_008358.1 1038725 1039081 D identified by match to protein family HMM PF02617; ATP-dependent Clp protease, adaptor protein ClpS 1038725..1039081 Hyphomonas neptunium ATCC 15444 4290260 YP_759752.1 CDS clpA NC_008358.1 1039139 1041454 D identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM TIGR02639; ATP-dependent Clp protease, ATP-binding subunit ClpA 1039139..1041454 Hyphomonas neptunium ATCC 15444 4287902 YP_759753.1 CDS HNE_1031 NC_008358.1 1041587 1042789 D identified by similarity to PIR:A44832; match to protein family HMM PF00144; putative esterase 1041587..1042789 Hyphomonas neptunium ATCC 15444 4288796 YP_759754.1 CDS HNE_1032 NC_008358.1 1042786 1043181 R identified by similarity to GB:AAN62225.1; hypothetical protein complement(1042786..1043181) Hyphomonas neptunium ATCC 15444 4289956 YP_759755.1 CDS HNE_1033 NC_008358.1 1043222 1043596 R identified by match to protein family HMM PF00581; rhodanese domain-containing protein complement(1043222..1043596) Hyphomonas neptunium ATCC 15444 4289101 YP_759756.1 CDS tldD NC_008358.1 1043633 1045036 R identified by similarity to SP:P46473; match to protein family HMM PF01523; TldD protein complement(1043633..1045036) Hyphomonas neptunium ATCC 15444 4288367 YP_759757.1 CDS HNE_1035 NC_008358.1 1045089 1045685 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1045089..1045685) Hyphomonas neptunium ATCC 15444 4287339 YP_759758.1 CDS HNE_1036 NC_008358.1 1045839 1046594 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1045839..1046594 Hyphomonas neptunium ATCC 15444 4288881 YP_759759.1 CDS HNE_1037 NC_008358.1 1046691 1047242 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein complement(1046691..1047242) Hyphomonas neptunium ATCC 15444 4288294 YP_759760.1 CDS coxB NC_008358.1 1047395 1048363 D identified by similarity to SP:P08306; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866; cytochrome c oxidase subunit II 1047395..1048363 Hyphomonas neptunium ATCC 15444 4287592 YP_759761.1 CDS HNE_1039 NC_008358.1 1048387 1050075 D identified by similarity to SP:P31833; match to protein family HMM PF00115; match to protein family HMM TIGR02891; cytochrome c oxidase subunit I 1048387..1050075 Hyphomonas neptunium ATCC 15444 4287532 YP_759762.1 CDS cyoE NC_008358.1 1050186 1051142 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1050186..1051142 Hyphomonas neptunium ATCC 15444 4288599 YP_759763.1 CDS HNE_1041 NC_008358.1 1051144 1051317 D hypothetical protein 1051144..1051317 Hyphomonas neptunium ATCC 15444 4290030 YP_759764.1 CDS HNE_1042 NC_008358.1 1051317 1051934 D identified by match to protein family HMM PF04442; cytochrome c oxidase assembly protein 1051317..1051934 Hyphomonas neptunium ATCC 15444 4290210 YP_759765.1 CDS HNE_1043 NC_008358.1 1052011 1052889 D identified by similarity to SP:P06030; match to protein family HMM PF00510; cytochrome c oxidase subunit III 1052011..1052889 Hyphomonas neptunium ATCC 15444 4289930 YP_759766.1 CDS HNE_1044 NC_008358.1 1053032 1053712 D identified by similarity to PIR:C83632; hypothetical protein 1053032..1053712 Hyphomonas neptunium ATCC 15444 4287909 YP_759767.1 CDS thrC NC_008358.1 1053709 1055091 D identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260; threonine synthase 1053709..1055091 Hyphomonas neptunium ATCC 15444 4288687 YP_759768.1 CDS HNE_1046 NC_008358.1 1055102 1055671 D identified by match to protein family HMM PF00583; acetyltransferase 1055102..1055671 Hyphomonas neptunium ATCC 15444 4290368 YP_759769.1 CDS HNE_1047 NC_008358.1 1055822 1056715 D identified by match to protein family HMM PF00563; EAL domain-containing protein 1055822..1056715 Hyphomonas neptunium ATCC 15444 4290279 YP_759770.1 CDS HNE_1048 NC_008358.1 1056721 1057299 D identified by similarity to SP:P45941; hypothetical protein 1056721..1057299 Hyphomonas neptunium ATCC 15444 4287929 YP_759771.1 CDS HNE_1049 NC_008358.1 1057306 1057872 R identified by similarity to SP:Q9A311; match to protein family HMM PF02622; hypothetical protein complement(1057306..1057872) Hyphomonas neptunium ATCC 15444 4288325 YP_759772.1 CDS HNE_1050 NC_008358.1 1057937 1059007 R identified by match to protein family HMM PF03929; PepSY-associated TM helix domain-containing protein complement(1057937..1059007) Hyphomonas neptunium ATCC 15444 4287690 YP_759773.1 CDS HNE_1051 NC_008358.1 1059013 1061328 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB dependent receptor complement(1059013..1061328) Hyphomonas neptunium ATCC 15444 4289703 YP_759774.1 CDS HNE_1052 NC_008358.1 1061404 1061886 D identified by match to protein family HMM PF00578; anti-oxidant AhpCTSA family protein 1061404..1061886 Hyphomonas neptunium ATCC 15444 4289972 YP_759775.1 CDS HNE_1053 NC_008358.1 1062038 1063003 D identified by match to protein family HMM PF01145; HflC/HflK family protein 1062038..1063003 Hyphomonas neptunium ATCC 15444 4289911 YP_759776.1 CDS HNE_1054 NC_008358.1 1063030 1063494 D identified by match to protein family HMM PF01957; nodulation efficiency protein D family protein 1063030..1063494 Hyphomonas neptunium ATCC 15444 4289672 YP_759777.1 CDS HNE_1055 NC_008358.1 1063614 1064480 R hypothetical protein complement(1063614..1064480) Hyphomonas neptunium ATCC 15444 4290302 YP_759778.1 CDS HNE_1056 NC_008358.1 1064543 1065469 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase complement(1064543..1065469) Hyphomonas neptunium ATCC 15444 4287265 YP_759779.1 CDS HNE_1057 NC_008358.1 1065676 1066896 R identified by match to protein family HMM PF00144; beta-lactamase complement(1065676..1066896) Hyphomonas neptunium ATCC 15444 4290136 YP_759780.1 CDS HNE_1058 NC_008358.1 1067060 1069066 D identified by match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; carbamoyl-phosphate synthase L chain/biotin carboxylase 1067060..1069066 Hyphomonas neptunium ATCC 15444 4287529 YP_759781.1 CDS HNE_1059 NC_008358.1 1069247 1069669 D identified by similarity to GB:AAM36135.1; match to protein family HMM PF05656; hypothetical protein 1069247..1069669 Hyphomonas neptunium ATCC 15444 4290141 YP_759782.1 CDS HNE_1060 NC_008358.1 1069904 1070347 D hypothetical protein 1069904..1070347 Hyphomonas neptunium ATCC 15444 4289947 YP_759783.1 CDS HNE_1061 NC_008358.1 1070365 1071147 D hypothetical protein 1070365..1071147 Hyphomonas neptunium ATCC 15444 4289255 YP_759784.1 CDS lipB NC_008358.1 1071345 1072049 R identified by match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B complement(1071345..1072049) Hyphomonas neptunium ATCC 15444 4288819 YP_759785.1 CDS HNE_1064 NC_008358.1 1072317 1073087 R identified by match to protein family HMM PF01925; hypothetical protein complement(1072317..1073087) Hyphomonas neptunium ATCC 15444 4287123 YP_759786.1 CDS moaC1 NC_008358.1 1073084 1073569 R identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C complement(1073084..1073569) Hyphomonas neptunium ATCC 15444 4290509 YP_759787.1 CDS moaB1 NC_008358.1 1073574 1074104 R identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B complement(1073574..1074104) Hyphomonas neptunium ATCC 15444 4289547 YP_759788.1 CDS moaE1 NC_008358.1 1074111 1074572 R identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 complement(1074111..1074572) Hyphomonas neptunium ATCC 15444 4290028 YP_759789.1 CDS HNE_1068 NC_008358.1 1074577 1074825 R identified by match to protein family HMM PF02597; putative molybdopterin converting factor subunit 1 complement(1074577..1074825) Hyphomonas neptunium ATCC 15444 4290048 YP_759790.1 CDS moaA1 NC_008358.1 1074829 1075860 R identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein MoaA complement(1074829..1075860) Hyphomonas neptunium ATCC 15444 4289007 YP_759791.1 CDS HNE_1070 NC_008358.1 1075853 1077394 R identified by match to protein family HMM PF02625; putative xanthine dehydrogenase accessory factor complement(1075853..1077394) Hyphomonas neptunium ATCC 15444 4288827 YP_759792.1 CDS HNE_1071 NC_008358.1 1077391 1079586 R identified by similarity to SP:P77489; match to protein family HMM PF01315; match to protein family HMM PF02738; putative xanthine dehydrogenase, molybdenum-binding subunit complement(1077391..1079586) Hyphomonas neptunium ATCC 15444 4290548 YP_759793.1 CDS HNE_1072 NC_008358.1 1079590 1080540 R identified by similarity to SP:P77324; match to protein family HMM PF00941; putative xanthine dehydrogenase, FAD-binding subunit complement(1079590..1080540) Hyphomonas neptunium ATCC 15444 4289131 YP_759794.1 CDS HNE_1073 NC_008358.1 1080540 1081190 R identified by similarity to SP:P77165; match to protein family HMM PF00111; match to protein family HMM PF01799; putative xanthine dehydrogenase, iron-sulfur binding subunit complement(1080540..1081190) Hyphomonas neptunium ATCC 15444 4288067 YP_759795.1 CDS HNE_1074 NC_008358.1 1081472 1082521 R identified by match to protein family HMM PF01594; hypothetical protein complement(1081472..1082521) Hyphomonas neptunium ATCC 15444 4287771 YP_759796.1 CDS HNE_1075 NC_008358.1 1082606 1083232 R identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382; PfpI family intracellular peptidase complement(1082606..1083232) Hyphomonas neptunium ATCC 15444 4290281 YP_759797.1 CDS HNE_1076 NC_008358.1 1083212 1083409 D hypothetical protein 1083212..1083409 Hyphomonas neptunium ATCC 15444 4288835 YP_759798.1 CDS HNE_1077 NC_008358.1 1083581 1084972 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1083581..1084972 Hyphomonas neptunium ATCC 15444 4290474 YP_759799.1 CDS leuD2 NC_008358.1 1084972 1085595 D identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit 1084972..1085595 Hyphomonas neptunium ATCC 15444 4289675 YP_759800.1 CDS HNE_1079 NC_008358.1 1085580 1086785 R identified by match to protein family HMM PF02515; L-carnitine dehydratase complement(1085580..1086785) Hyphomonas neptunium ATCC 15444 4289317 YP_759801.1 CDS HNE_1080 NC_008358.1 1086898 1087848 D identified by similarity to GB:AAB50182.1; match to protein family HMM PF00682; putative hydroxymethylglutaryl-CoA lyase 1086898..1087848 Hyphomonas neptunium ATCC 15444 4287261 YP_759802.1 CDS HNE_1081 NC_008358.1 1087864 1089312 D identified by similarity to GB:AAL58394.1; match to protein family HMM PF00474; cation/acetate symporter ActP 1087864..1089312 Hyphomonas neptunium ATCC 15444 4290492 YP_759803.1 CDS HNE_1082 NC_008358.1 1089359 1090261 D identified by similarity to PIR:S75692; putative lipoprotein 1089359..1090261 Hyphomonas neptunium ATCC 15444 4290004 YP_759804.1 CDS HNE_1083 NC_008358.1 1090334 1090840 R identified by similarity to PIR:AE2432; hypothetical protein complement(1090334..1090840) Hyphomonas neptunium ATCC 15444 4288467 YP_759805.1 CDS HNE_1084 NC_008358.1 1091023 1093479 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1091023..1093479 Hyphomonas neptunium ATCC 15444 4290259 YP_759806.1 CDS HNE_1085 NC_008358.1 1093723 1095294 D identified by match to protein family HMM PF07690; major facilitator family transporter 1093723..1095294 Hyphomonas neptunium ATCC 15444 4289275 YP_759807.1 CDS HNE_1086 NC_008358.1 1095283 1096086 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(1095283..1096086) Hyphomonas neptunium ATCC 15444 4288745 YP_759808.1 CDS HNE_1087 NC_008358.1 1096086 1097099 R identified by similarity to SP:P76113; match to protein family HMM PF00107; L4BD family NADP-dependent oxidoreductase complement(1096086..1097099) Hyphomonas neptunium ATCC 15444 4288605 YP_759809.1 CDS HNE_1088 NC_008358.1 1097096 1098025 R hypothetical protein complement(1097096..1098025) Hyphomonas neptunium ATCC 15444 4290211 YP_759810.1 CDS HNE_1089 NC_008358.1 1098073 1098369 D identified by similarity to GB:BAC53275.1; match to protein family HMM PF07045; hypothetical protein 1098073..1098369 Hyphomonas neptunium ATCC 15444 4288138 YP_759811.1 CDS HNE_1090 NC_008358.1 1098366 1099202 D putative lipoprotein 1098366..1099202 Hyphomonas neptunium ATCC 15444 4289840 YP_759812.1 CDS HNE_1091 NC_008358.1 1099212 1099577 R hypothetical protein complement(1099212..1099577) Hyphomonas neptunium ATCC 15444 4290160 YP_759813.1 CDS HNE_1092 NC_008358.1 1099581 1100846 R identified by match to protein family HMM PF01209; match to protein family HMM PF02390; UbiE/COQ5 family methlytransferase complement(1099581..1100846) Hyphomonas neptunium ATCC 15444 4289931 YP_759814.1 CDS HNE_1093 NC_008358.1 1100942 1101256 D hypothetical protein 1100942..1101256 Hyphomonas neptunium ATCC 15444 4287573 YP_759815.1 CDS HNE_1094 NC_008358.1 1101267 1102103 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1101267..1102103 Hyphomonas neptunium ATCC 15444 4287981 YP_759816.1 CDS HNE_1095 NC_008358.1 1102100 1103008 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1102100..1103008 Hyphomonas neptunium ATCC 15444 4289507 YP_759817.1 CDS HNE_1096 NC_008358.1 1103031 1103642 D hypothetical protein 1103031..1103642 Hyphomonas neptunium ATCC 15444 4288281 YP_759818.1 CDS HNE_1097 NC_008358.1 1103731 1104555 D identified by match to protein family HMM PF03328; HpcH/HpaI aldolase/citrate lyase family protein 1103731..1104555 Hyphomonas neptunium ATCC 15444 4287946 YP_759819.1 CDS HNE_1098 NC_008358.1 1104497 1105093 D identified by match to protein family HMM PF01575; MaoC domain-containing protein 1104497..1105093 Hyphomonas neptunium ATCC 15444 4288589 YP_759820.1 CDS HNE_1099 NC_008358.1 1105129 1106319 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase 1105129..1106319 Hyphomonas neptunium ATCC 15444 4290046 YP_759821.1 CDS HNE_1100 NC_008358.1 1106351 1107499 D identified by match to protein family HMM PF02515; CaiB/BaiF family protein 1106351..1107499 Hyphomonas neptunium ATCC 15444 4287785 YP_759822.1 CDS HNE_1101 NC_008358.1 1107499 1107933 D identified by similarity to PIR:AE2432; hypothetical protein 1107499..1107933 Hyphomonas neptunium ATCC 15444 4287999 YP_759823.1 CDS HNE_1102 NC_008358.1 1107938 1108642 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(1107938..1108642) Hyphomonas neptunium ATCC 15444 4289657 YP_759824.1 CDS HNE_1103 NC_008358.1 1108826 1110133 D identified by match to protein family HMM PF03972; MmgE/PrpD family protein 1108826..1110133 Hyphomonas neptunium ATCC 15444 4290238 YP_759825.1 CDS HNE_1104 NC_008358.1 1110187 1111500 D identified by match to protein family HMM PF03972; MmgE/PrpD family protein 1110187..1111500 Hyphomonas neptunium ATCC 15444 4287298 YP_759826.1 CDS HNE_1105 NC_008358.1 1111553 1112902 D putative aerobic phenylacetate-CoA ligase 1111553..1112902 Hyphomonas neptunium ATCC 15444 4288074 YP_759827.1 CDS gattA NC_008358.1 1112899 1114185 D identified by match to protein family HMM PF01425; glutamyl-tRNA (Gln) amidotransferase subunit A 1112899..1114185 Hyphomonas neptunium ATCC 15444 4287742 YP_759828.1 CDS HNE_1107 NC_008358.1 1114176 1114958 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(1114176..1114958) Hyphomonas neptunium ATCC 15444 4289849 YP_759829.1 CDS HNE_1108 NC_008358.1 1114955 1116382 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein complement(1114955..1116382) Hyphomonas neptunium ATCC 15444 4288052 YP_759830.1 CDS HNE_1109 NC_008358.1 1116379 1117959 R identified by match to protein family HMM PF01565; putative oxidoreductase, FAD-binding complement(1116379..1117959) Hyphomonas neptunium ATCC 15444 4287644 YP_759831.1 CDS HNE_1110 NC_008358.1 1117978 1118634 R hypothetical protein complement(1117978..1118634) Hyphomonas neptunium ATCC 15444 4287760 YP_759832.1 CDS HNE_1111 NC_008358.1 1118697 1119494 R identified by match to protein family HMM PF00392; match to protein family HMM PF07702; GntR family transcriptional regulator complement(1118697..1119494) Hyphomonas neptunium ATCC 15444 4287238 YP_759833.1 CDS HNE_1112 NC_008358.1 1119653 1120474 D identified by similarity to GB:CAB59714.1; putative lipoprotein 1119653..1120474 Hyphomonas neptunium ATCC 15444 4289734 YP_759834.1 CDS HNE_1113 NC_008358.1 1120494 1121624 R identified by match to protein family HMM PF00795; match to protein family HMM TIGR01409; carbon-nitrogen family hydrolase complement(1120494..1121624) Hyphomonas neptunium ATCC 15444 4289553 YP_759835.1 CDS HNE_1114 NC_008358.1 1121621 1122532 R identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein complement(1121621..1122532) Hyphomonas neptunium ATCC 15444 4290147 YP_759836.1 CDS HNE_1115 NC_008358.1 1122516 1123463 R identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein complement(1122516..1123463) Hyphomonas neptunium ATCC 15444 4287268 YP_759837.1 CDS HNE_1116 NC_008358.1 1123460 1124131 R identified by match to protein family HMM PF00857; isochorismatase family protein complement(1123460..1124131) Hyphomonas neptunium ATCC 15444 4287193 YP_759838.1 CDS HNE_1117 NC_008358.1 1124461 1126641 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1124461..1126641 Hyphomonas neptunium ATCC 15444 4290528 YP_759839.1 CDS rhlE NC_008358.1 1126727 1128121 R identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE complement(1126727..1128121) Hyphomonas neptunium ATCC 15444 4290097 YP_759840.1 CDS HNE_1119 NC_008358.1 1128385 1129191 R identified by similarity to GB:CAH34042.1; hypothetical protein complement(1128385..1129191) Hyphomonas neptunium ATCC 15444 4287160 YP_759841.1 CDS HNE_1120 NC_008358.1 1129275 1130195 D identified by match to protein family HMM PF00487; fatty acid desaturase family protein 1129275..1130195 Hyphomonas neptunium ATCC 15444 4290387 YP_759842.1 CDS HNE_1121 NC_008358.1 1130511 1131551 D identified by match to protein family HMM PF00356; match to protein family HMM PF00532; LacI family transcriptional regulator 1130511..1131551 Hyphomonas neptunium ATCC 15444 4288353 YP_759843.1 CDS HNE_1122 NC_008358.1 1131719 1134553 D putative phosphoenolpyruvate carboxylase 1131719..1134553 Hyphomonas neptunium ATCC 15444 4287191 YP_759844.1 CDS HNE_1123 NC_008358.1 1134768 1135748 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1134768..1135748 Hyphomonas neptunium ATCC 15444 4288186 YP_759845.1 CDS hisC NC_008358.1 1136897 1138000 D identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 1136897..1138000 Hyphomonas neptunium ATCC 15444 4289914 YP_759846.1 CDS panC NC_008358.1 1137984 1138865 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(1137984..1138865) Hyphomonas neptunium ATCC 15444 4287761 YP_759847.1 CDS HNE_1127 NC_008358.1 1138933 1139412 D hypothetical protein 1138933..1139412 Hyphomonas neptunium ATCC 15444 4289983 YP_759848.1 CDS HNE_1128 NC_008358.1 1139474 1140361 D identified by similarity to GB:AAK24136.1; hypothetical protein 1139474..1140361 Hyphomonas neptunium ATCC 15444 4287974 YP_759849.1 CDS HNE_1129 NC_008358.1 1140464 1141603 D identified by similarity to PIR:A44832; match to protein family HMM PF00144; putative esterase 1140464..1141603 Hyphomonas neptunium ATCC 15444 4288184 YP_759850.1 CDS tgt NC_008358.1 1141651 1142790 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1141651..1142790 Hyphomonas neptunium ATCC 15444 4289119 YP_759851.1 CDS HNE_1131 NC_008358.1 1142868 1143353 R identified by similarity to GB:AAK23568.1; hypothetical protein complement(1142868..1143353) Hyphomonas neptunium ATCC 15444 4287414 YP_759852.1 CDS HNE_1133 NC_008358.1 1143719 1144072 R identified by similarity to PIR:AG2064; hypothetical protein complement(1143719..1144072) Hyphomonas neptunium ATCC 15444 4287667 YP_759853.1 CDS HNE_1134 NC_008358.1 1144302 1145477 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(1144302..1145477) Hyphomonas neptunium ATCC 15444 4288570 YP_759854.1 CDS HNE_1135 NC_008358.1 1145575 1146339 D identified by similarity to SP:P54303; match to protein family HMM PF00196; LuxR family transcriptional regulator 1145575..1146339 Hyphomonas neptunium ATCC 15444 4287316 YP_759855.1 CDS HNE_1136 NC_008358.1 1146377 1147786 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; putative UDP-N-acetylmuramate--L-alanine ligase complement(1146377..1147786) Hyphomonas neptunium ATCC 15444 4289656 YP_759856.1 CDS HNE_1137 NC_008358.1 1148422 1149261 D identified by match to protein family HMM PF02016; LD-carboxypeptidase family protein 1148422..1149261 Hyphomonas neptunium ATCC 15444 4290408 YP_759857.1 CDS pntB NC_008358.1 1149318 1150736 R identified by similarity to SP:P07002; match to protein family HMM PF02233; NAD(P) transhydrogenase subunit beta complement(1149318..1150736) Hyphomonas neptunium ATCC 15444 4288446 YP_759858.1 CDS pntAB NC_008358.1 1150739 1151110 R identified by similarity to SP:Q59764; NAD(P) transhydrogenase subunit alpha part 2 complement(1150739..1151110) Hyphomonas neptunium ATCC 15444 4289799 YP_759859.1 CDS pntAA NC_008358.1 1151107 1152222 R identified by similarity to SP:Q60164; match to protein family HMM PF01262; match to protein family HMM PF05222; NAD(P) transhydrogenase subunit alpha part 1 complement(1151107..1152222) Hyphomonas neptunium ATCC 15444 4290209 YP_759860.1 CDS HNE_1141 NC_008358.1 1152294 1153061 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 1152294..1153061 Hyphomonas neptunium ATCC 15444 4288262 YP_759861.1 CDS HNE_1142 NC_008358.1 1153445 1155346 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor 1153445..1155346 Hyphomonas neptunium ATCC 15444 4290015 YP_759862.1 CDS HNE_1143 NC_008358.1 1155373 1156155 D iron compound ABC transporter periplasmic substrate-binding protein 1155373..1156155 Hyphomonas neptunium ATCC 15444 4287007 YP_759863.1 CDS HNE_1144 NC_008358.1 1156152 1157135 D identified by similarity to GB:AAD37494.1; match to protein family HMM PF01032; iron compound ABC transporter permease 1156152..1157135 Hyphomonas neptunium ATCC 15444 4289882 YP_759864.1 CDS HNE_1145 NC_008358.1 1157132 1157881 D identified by similarity to SP:P15031; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1157132..1157881 Hyphomonas neptunium ATCC 15444 4288147 YP_759865.1 CDS HNE_1146 NC_008358.1 1157929 1158231 D hypothetical protein 1157929..1158231 Hyphomonas neptunium ATCC 15444 4288817 YP_759866.1 CDS galU NC_008358.1 1158315 1159187 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase 1158315..1159187 Hyphomonas neptunium ATCC 15444 4289676 YP_759867.1 CDS HNE_1148 NC_008358.1 1159419 1160414 D identified by match to protein family HMM PF00291; pyridoxal-phosphate-dependent enzyme 1159419..1160414 Hyphomonas neptunium ATCC 15444 4288780 YP_759868.1 CDS HNE_1149 NC_008358.1 1160603 1161490 D identified by match to protein family HMM PF06981; putative Flp pilus assembly protein CpaB 1160603..1161490 Hyphomonas neptunium ATCC 15444 4287964 YP_759869.1 CDS HNE_1150 NC_008358.1 1161490 1162788 D identified by match to protein family HMM PF00263; match to protein family HMM PF04972; type II/III secretion system protein 1161490..1162788 Hyphomonas neptunium ATCC 15444 4289544 YP_759870.1 CDS HNE_1151 NC_008358.1 1162792 1163055 D identified by similarity to GB:CAE27943.1; putative lipoprotein 1162792..1163055 Hyphomonas neptunium ATCC 15444 4290502 YP_759871.1 CDS HNE_1152 NC_008358.1 1163052 1164269 D identified by similarity to GB:AAF40194.1; putative pilus assembly protein CpaE 1163052..1164269 Hyphomonas neptunium ATCC 15444 4288836 YP_759872.1 CDS HNE_1153 NC_008358.1 1164266 1165654 D identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437; type II/IV secretion system protein 1164266..1165654 Hyphomonas neptunium ATCC 15444 4288951 YP_759873.1 CDS HNE_1154 NC_008358.1 1165702 1166652 D identified by match to protein family HMM PF00482; putative Flp pilus assembly protein TadB 1165702..1166652 Hyphomonas neptunium ATCC 15444 4288788 YP_759874.1 CDS HNE_1155 NC_008358.1 1166665 1167597 D identified by similarity to GB:AAN75213.1; match to protein family HMM PF00482; putative Flp pilus assembly protein TadC 1166665..1167597 Hyphomonas neptunium ATCC 15444 4290021 YP_759875.1 CDS accA NC_008358.1 1167642 1168598 D identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase carboxyl transferase subunit alpha 1167642..1168598 Hyphomonas neptunium ATCC 15444 4288908 YP_759876.1 CDS thiL NC_008358.1 1168608 1169561 D identified by match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 1168608..1169561 Hyphomonas neptunium ATCC 15444 4289518 YP_759877.1 CDS hppA NC_008358.1 1169681 1171858 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1169681..1171858 Hyphomonas neptunium ATCC 15444 4287621 YP_759878.1 CDS HNE_1159 NC_008358.1 1172199 1172678 R identified by match to protein family HMM PF04355; SmpA/OmlA family protein complement(1172199..1172678) Hyphomonas neptunium ATCC 15444 4289385 YP_759879.1 CDS HNE_1160 NC_008358.1 1172752 1173300 D identified by similarity to GB:CAC45799.1; hypothetical protein 1172752..1173300 Hyphomonas neptunium ATCC 15444 4289207 YP_759880.1 CDS plsX NC_008358.1 1173406 1174440 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1173406..1174440 Hyphomonas neptunium ATCC 15444 4289488 YP_759881.1 CDS fabH NC_008358.1 1174473 1175444 D identified by match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III 1174473..1175444 Hyphomonas neptunium ATCC 15444 4289152 YP_759882.1 CDS HNE_1163 NC_008358.1 1175540 1175836 D identified by similarity to SP:P30787; match to protein family HMM PF00216; putative integration host factor subunit alpha 1175540..1175836 Hyphomonas neptunium ATCC 15444 4287222 YP_759883.1 CDS HNE_1164 NC_008358.1 1175854 1176324 D hypothetical protein 1175854..1176324 Hyphomonas neptunium ATCC 15444 4288099 YP_759884.1 CDS msrB2 NC_008358.1 1176673 1177080 D identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase 1176673..1177080 Hyphomonas neptunium ATCC 15444 4288562 YP_759885.1 CDS HNE_1167 NC_008358.1 1177145 1179382 D identified by similarity to SP:P24555; match to protein family HMM PF00326; match to protein family HMM PF02897; S9A family peptidase 1177145..1179382 Hyphomonas neptunium ATCC 15444 4289805 YP_759886.1 CDS HNE_1168 NC_008358.1 1179388 1179849 D hypothetical protein 1179388..1179849 Hyphomonas neptunium ATCC 15444 4287540 YP_759887.1 CDS HNE_1169 NC_008358.1 1179907 1180362 R identified by match to protein family HMM PF01575; MaoC family protein complement(1179907..1180362) Hyphomonas neptunium ATCC 15444 4288551 YP_759888.1 CDS HNE_1170 NC_008358.1 1180499 1180858 D identified by similarity to GB:AAK22399.1; hypothetical protein 1180499..1180858 Hyphomonas neptunium ATCC 15444 4289299 YP_759889.1 CDS HNE_1171 NC_008358.1 1180860 1182002 R identified by match to protein family HMM PF00266; class V aminotransferase complement(1180860..1182002) Hyphomonas neptunium ATCC 15444 4288146 YP_759890.1 CDS HNE_1172 NC_008358.1 1181902 1182762 R hypothetical protein complement(1181902..1182762) Hyphomonas neptunium ATCC 15444 4290196 YP_759891.1 CDS HNE_1173 NC_008358.1 1182807 1183256 R identified by match to protein family HMM PF01152; hypothetical protein complement(1182807..1183256) Hyphomonas neptunium ATCC 15444 4287328 YP_759892.1 CDS HNE_1174 NC_008358.1 1183357 1183878 R identified by match to protein family HMM PF00583; acetyltransferase complement(1183357..1183878) Hyphomonas neptunium ATCC 15444 4288715 YP_759893.1 CDS HNE_1175 NC_008358.1 1183875 1184483 R putative nicotinamide-nucleotide adenylyltransferase complement(1183875..1184483) Hyphomonas neptunium ATCC 15444 4287642 YP_759894.1 CDS pnuC NC_008358.1 1184459 1185115 R identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528; nicotinamide mononucleotide transporter PnuC complement(1184459..1185115) Hyphomonas neptunium ATCC 15444 4287978 YP_759895.1 CDS HNE_1177 NC_008358.1 1185186 1186403 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1185186..1186403) Hyphomonas neptunium ATCC 15444 4289182 YP_759896.1 CDS HNE_1178 NC_008358.1 1186488 1187234 D identified by match to protein family HMM PF00588; RNA methyltransferase 1186488..1187234 Hyphomonas neptunium ATCC 15444 4290193 YP_759897.1 CDS HNE_1179 NC_008358.1 1187273 1188742 D hypothetical protein 1187273..1188742 Hyphomonas neptunium ATCC 15444 4289935 YP_759898.1 CDS HNE_1180 NC_008358.1 1188880 1189002 R hypothetical protein complement(1188880..1189002) Hyphomonas neptunium ATCC 15444 4289489 YP_759899.1 CDS HNE_1181 NC_008358.1 1188994 1189341 D hypothetical protein 1188994..1189341 Hyphomonas neptunium ATCC 15444 4289585 YP_759900.1 CDS HNE_1182 NC_008358.1 1189511 1190275 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(1189511..1190275) Hyphomonas neptunium ATCC 15444 4288905 YP_759901.1 CDS HNE_1183 NC_008358.1 1190384 1191577 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 1190384..1191577 Hyphomonas neptunium ATCC 15444 4289500 YP_759902.1 CDS HNE_1184 NC_008358.1 1191582 1192628 D identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein 1191582..1192628 Hyphomonas neptunium ATCC 15444 4289049 YP_759903.1 CDS HNE_1185 NC_008358.1 1192692 1193300 D hypothetical protein 1192692..1193300 Hyphomonas neptunium ATCC 15444 4287465 YP_759904.1 CDS HNE_1186 NC_008358.1 1193327 1193926 D identified by similarity to GB:BAC49397.1; hypothetical protein 1193327..1193926 Hyphomonas neptunium ATCC 15444 4288913 YP_759905.1 CDS eda NC_008358.1 1194085 1194720 D identified by similarity to SP:P10177; match to protein family HMM PF01081; match to protein family HMM TIGR01182; 2-dehydro-3-deoxyphosphogluconate aldolase 1194085..1194720 Hyphomonas neptunium ATCC 15444 4287732 YP_759906.1 CDS HNE_1188 NC_008358.1 1194742 1196262 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis family protein complement(1194742..1196262) Hyphomonas neptunium ATCC 15444 4288040 YP_759907.1 CDS HNE_1189 NC_008358.1 1196829 1201379 D identified by similarity to SP:P39847; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; ATP-dependent AMP-binding enzyme family protein 1196829..1201379 Hyphomonas neptunium ATCC 15444 4290522 YP_759908.1 CDS HNE_1190 NC_008358.1 1201385 1207642 D identified by match to protein family HMM PF00106; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801; polyketide synthase type I 1201385..1207642 Hyphomonas neptunium ATCC 15444 4289448 YP_759909.1 CDS HNE_1191 NC_008358.1 1207651 1208583 D identified by similarity to GB:AAN81510.1; hypothetical protein 1207651..1208583 Hyphomonas neptunium ATCC 15444 4288277 YP_759910.1 CDS lldD NC_008358.1 1208622 1209788 R flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase complement(1208622..1209788) Hyphomonas neptunium ATCC 15444 4287624 YP_759911.1 CDS HNE_1193 NC_008358.1 1210140 1211444 D identified by similarity to GB:AAK22150.1; hypothetical protein 1210140..1211444 Hyphomonas neptunium ATCC 15444 4288330 YP_759912.1 CDS HNE_1194 NC_008358.1 1211506 1213911 D identified by match to protein family HMM PF02706; chain length determinant family protein 1211506..1213911 Hyphomonas neptunium ATCC 15444 4287462 YP_759913.1 CDS HNE_1195 NC_008358.1 1213995 1215134 D identified by similarity to SP:P33694; putative glycosyl transferase 1213995..1215134 Hyphomonas neptunium ATCC 15444 4287200 YP_759914.1 CDS HNE_1196 NC_008358.1 1215318 1216487 D identified by match to protein family HMM PF04932; putative O-antigen polymerase 1215318..1216487 Hyphomonas neptunium ATCC 15444 4288626 YP_759915.1 CDS HNE_1197 NC_008358.1 1216487 1217215 D identified by match to protein family HMM PF00657; putative lipase/acylhydrolase 1216487..1217215 Hyphomonas neptunium ATCC 15444 4289010 YP_759916.1 CDS HNE_1198 NC_008358.1 1217239 1218318 D identified by similarity to SP:P26502; match to protein family HMM PF01757; acyltransferase family protein 1217239..1218318 Hyphomonas neptunium ATCC 15444 4289045 YP_759917.1 CDS HNE_1199 NC_008358.1 1218454 1218657 D hypothetical protein 1218454..1218657 Hyphomonas neptunium ATCC 15444 4287753 YP_759918.1 CDS galE NC_008358.1 1218768 1219775 D identified by similarity to SP:P26503; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1218768..1219775 Hyphomonas neptunium ATCC 15444 4288915 YP_759919.1 CDS HNE_1201 NC_008358.1 1219817 1220815 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1219817..1220815 Hyphomonas neptunium ATCC 15444 4290299 YP_759920.1 CDS HNE_1202 NC_008358.1 1220808 1221677 R identified by match to protein family HMM PF06271; RDD family protein complement(1220808..1221677) Hyphomonas neptunium ATCC 15444 4288705 YP_759921.1 CDS HNE_1203 NC_008358.1 1221758 1222756 R hypothetical protein complement(1221758..1222756) Hyphomonas neptunium ATCC 15444 4289036 YP_759922.1 CDS HNE_1204 NC_008358.1 1222753 1224066 R identified by similarity to GB:AAK22553.1; match to protein family HMM PF01882; hypothetical protein complement(1222753..1224066) Hyphomonas neptunium ATCC 15444 4288941 YP_759923.1 CDS HNE_1205 NC_008358.1 1224063 1225019 R identified by match to protein family HMM PF07726; match to protein family HMM PF07728; AAA ATPase complement(1224063..1225019) Hyphomonas neptunium ATCC 15444 4287356 YP_759924.1 CDS HNE_1206 NC_008358.1 1225006 1226226 R identified by similarity to GB:AAK22551.1; hypothetical protein complement(1225006..1226226) Hyphomonas neptunium ATCC 15444 4289431 YP_759925.1 CDS HNE_1207 NC_008358.1 1226223 1226834 R hypothetical protein complement(1226223..1226834) Hyphomonas neptunium ATCC 15444 4288540 YP_759926.1 CDS HNE_1208 NC_008358.1 1227226 1228785 R identified by similarity to GB:AAK23612.1; hypothetical protein complement(1227226..1228785) Hyphomonas neptunium ATCC 15444 4290263 YP_759927.1 CDS HNE_1209 NC_008358.1 1228936 1229862 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 1228936..1229862 Hyphomonas neptunium ATCC 15444 4287398 YP_759928.1 CDS HNE_1210 NC_008358.1 1229923 1230390 D identified by similarity to GB:AAT34025.1; hypothetical protein 1229923..1230390 Hyphomonas neptunium ATCC 15444 4288129 YP_759929.1 CDS HNE_1211 NC_008358.1 1230376 1232313 R identified by match to protein family HMM PF00135; carboxylesterase/lipase family protein complement(1230376..1232313) Hyphomonas neptunium ATCC 15444 4286997 YP_759930.1 CDS HNE_1212 NC_008358.1 1232467 1233588 R catalyzes the formation of cysteine and 2-oxobutanoate from cystathionine; cystathionine gamma-lyase complement(1232467..1233588) Hyphomonas neptunium ATCC 15444 4287543 YP_759931.1 CDS HNE_1213 NC_008358.1 1233581 1234576 R hypothetical protein complement(1233581..1234576) Hyphomonas neptunium ATCC 15444 4289617 YP_759932.1 CDS HNE_1214 NC_008358.1 1234667 1235488 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(1234667..1235488) Hyphomonas neptunium ATCC 15444 4289120 YP_759933.1 CDS HNE_1215 NC_008358.1 1235569 1235991 R identified by similarity to GB:AAK25421.1; hypothetical protein complement(1235569..1235991) Hyphomonas neptunium ATCC 15444 4287537 YP_759934.1 CDS HNE_1216 NC_008358.1 1235996 1236565 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(1235996..1236565) Hyphomonas neptunium ATCC 15444 4290328 YP_759935.1 CDS HNE_1217 NC_008358.1 1236562 1238874 R identified by similarity to GB:BAA11872.1; match to protein family HMM PF00326; match to protein family HMM PF00930; dipeptidyl aminopeptidase IV complement(1236562..1238874) Hyphomonas neptunium ATCC 15444 4287674 YP_759936.1 CDS HNE_1218 NC_008358.1 1238984 1239853 R hypothetical protein complement(1238984..1239853) Hyphomonas neptunium ATCC 15444 4288213 YP_759937.1 CDS HNE_1219 NC_008358.1 1239952 1241616 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1239952..1241616 Hyphomonas neptunium ATCC 15444 4288889 YP_759938.1 CDS HNE_1220 NC_008358.1 1241805 1243325 D identified by match to protein family HMM PF01425; amidase family protein 1241805..1243325 Hyphomonas neptunium ATCC 15444 4289992 YP_759939.1 CDS HNE_1221 NC_008358.1 1243423 1243974 D hypothetical protein 1243423..1243974 Hyphomonas neptunium ATCC 15444 4287016 YP_759940.1 CDS HNE_1222 NC_008358.1 1243996 1244691 R hypothetical protein complement(1243996..1244691) Hyphomonas neptunium ATCC 15444 4287266 YP_759941.1 CDS HNE_1223 NC_008358.1 1244793 1245404 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 1244793..1245404 Hyphomonas neptunium ATCC 15444 4287626 YP_759942.1 CDS HNE_1224 NC_008358.1 1245718 1246086 D hypothetical protein 1245718..1246086 Hyphomonas neptunium ATCC 15444 4289014 YP_759943.1 CDS ccoS NC_008358.1 1246171 1246338 R identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847; cbb3-type cytochrome oxidase maturation protein complement(1246171..1246338) Hyphomonas neptunium ATCC 15444 4288196 YP_759944.1 CDS HNE_1226 NC_008358.1 1246335 1248554 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1246335..1248554) Hyphomonas neptunium ATCC 15444 4287524 YP_759945.1 CDS HNE_1227 NC_008358.1 1248551 1249069 R FixH family protein complement(1248551..1249069) Hyphomonas neptunium ATCC 15444 4287247 YP_759946.1 CDS fixG NC_008358.1 1249069 1250541 R identified by match to protein family HMM PF00037; match to protein family HMM TIGR02745; cytochrome c oxidase accessory protein FixG complement(1249069..1250541) Hyphomonas neptunium ATCC 15444 4287097 YP_759947.1 CDS ccoP NC_008358.1 1250538 1251428 R identified by similarity to GB:AAC72074.1; match to protein family HMM PF00034; match to protein family HMM TIGR00782; cbb3-type cytochrome c oxidase subunit III complement(1250538..1251428) Hyphomonas neptunium ATCC 15444 4287834 YP_759948.1 CDS ccoQ NC_008358.1 1251421 1251582 R identified by similarity to GB:AAK23384.1; match to protein family HMM PF05545; cbb3-type cytochrome c oxidase subunit CcoQ complement(1251421..1251582) Hyphomonas neptunium ATCC 15444 4289649 YP_759949.1 CDS ccoO NC_008358.1 1251594 1252361 R identified by similarity to GB:AAC46109.1; match to protein family HMM PF02433; match to protein family HMM TIGR00781; cbb3-type cytochrome c oxidase subunit II complement(1251594..1252361) Hyphomonas neptunium ATCC 15444 4287175 YP_759950.1 CDS ccoN NC_008358.1 1252373 1254052 R identified by similarity to SP:P98055; match to protein family HMM PF00115; match to protein family HMM TIGR00780; cbb3-type cytochrome c oxidase subunit I complement(1252373..1254052) Hyphomonas neptunium ATCC 15444 4288127 YP_759951.1 CDS HNE_1233 NC_008358.1 1254201 1254488 D hypothetical protein 1254201..1254488 Hyphomonas neptunium ATCC 15444 4290008 YP_759952.1 CDS fixL NC_008358.1 1254562 1255728 D identified by similarity to SP:P26489; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase FixL 1254562..1255728 Hyphomonas neptunium ATCC 15444 4287090 YP_759953.1 CDS fixJ NC_008358.1 1255725 1256342 D identified by similarity to SP:P10958; match to protein family HMM PF00072; match to protein family HMM PF00196; DNA-binding response regulator FixJ 1255725..1256342 Hyphomonas neptunium ATCC 15444 4287602 YP_759954.1 CDS HNE_1236 NC_008358.1 1256412 1256822 D identified by match to protein family HMM PF00072; response regulator 1256412..1256822 Hyphomonas neptunium ATCC 15444 4289456 YP_759955.1 CDS HNE_1237 NC_008358.1 1256830 1258269 R identified by match to protein family HMM PF01381; match to protein family HMM PF06114; DNA-binding protein complement(1256830..1258269) Hyphomonas neptunium ATCC 15444 4289978 YP_759956.1 CDS aceB NC_008358.1 1258427 1260064 D Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle; malate synthase 1258427..1260064 Hyphomonas neptunium ATCC 15444 4289261 YP_759957.1 CDS aceA NC_008358.1 1260109 1261731 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 1260109..1261731 Hyphomonas neptunium ATCC 15444 4288055 YP_759958.1 CDS HNE_1240 NC_008358.1 1262096 1262293 D hypothetical protein 1262096..1262293 Hyphomonas neptunium ATCC 15444 4287772 YP_759959.1 CDS HNE_1241 NC_008358.1 1262297 1262860 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(1262297..1262860) Hyphomonas neptunium ATCC 15444 4287259 YP_759960.1 CDS HNE_1242 NC_008358.1 1262993 1264849 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; heavy metal ABC transporter permease/ATP-binding protein 1262993..1264849 Hyphomonas neptunium ATCC 15444 4287211 YP_759961.1 CDS HNE_1243 NC_008358.1 1264876 1265823 D phosphatidylserine decarboxylase-related protein 1264876..1265823 Hyphomonas neptunium ATCC 15444 4289013 YP_759962.1 CDS HNE_1244 NC_008358.1 1266168 1266971 R putative lipoprotein complement(1266168..1266971) Hyphomonas neptunium ATCC 15444 4289728 YP_759963.1 CDS HNE_1245 NC_008358.1 1266974 1267936 R putative lipoprotein complement(1266974..1267936) Hyphomonas neptunium ATCC 15444 4288627 YP_759964.1 CDS HNE_1246 NC_008358.1 1268227 1270851 D identified by match to protein family HMM PF00069; match to protein family HMM PF00486; serine/threonine protein kinase 1268227..1270851 Hyphomonas neptunium ATCC 15444 4290540 YP_759965.1 CDS bioA NC_008358.1 1270852 1272129 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1270852..1272129) Hyphomonas neptunium ATCC 15444 4290363 YP_759966.1 CDS bioF NC_008358.1 1272238 1273377 D identified by match to protein family HMM PF00155; match to protein family HMM PF01212; 8-amino-7-oxononanoate synthase 1272238..1273377 Hyphomonas neptunium ATCC 15444 4290332 YP_759967.1 CDS bioD NC_008358.1 1273359 1274027 D identified by similarity to SP:P53558; match to protein family HMM TIGR00347; dethiobiotin synthase 1273359..1274027 Hyphomonas neptunium ATCC 15444 4289490 YP_759968.1 CDS HNE_1250 NC_008358.1 1274155 1274775 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1274155..1274775 Hyphomonas neptunium ATCC 15444 4287695 YP_759969.1 CDS HNE_1251 NC_008358.1 1274797 1276161 R identified by match to protein family HMM PF01546; M20/M25/M40 family peptidase complement(1274797..1276161) Hyphomonas neptunium ATCC 15444 4287255 YP_759970.1 CDS HNE_1252 NC_008358.1 1276194 1277249 R identified by match to protein family HMM PF00296; luciferase family monooxygenase complement(1276194..1277249) Hyphomonas neptunium ATCC 15444 4289217 YP_759971.1 CDS HNE_1253 NC_008358.1 1277294 1278637 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(1277294..1278637) Hyphomonas neptunium ATCC 15444 4289273 YP_759972.1 CDS HNE_1254 NC_008358.1 1278835 1280097 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator family protein complement(1278835..1280097) Hyphomonas neptunium ATCC 15444 4288293 YP_759973.1 CDS HNE_1255 NC_008358.1 1280094 1280678 R identified by match to protein family HMM PF01613; flavin reductase family protein complement(1280094..1280678) Hyphomonas neptunium ATCC 15444 4289872 YP_759974.1 CDS HNE_1256 NC_008358.1 1280623 1281903 R hypothetical protein complement(1280623..1281903) Hyphomonas neptunium ATCC 15444 4288508 YP_759975.1 CDS HNE_1257 NC_008358.1 1282015 1282665 R identified by match to protein family HMM PF00857; isochorismatase family protein complement(1282015..1282665) Hyphomonas neptunium ATCC 15444 4288866 YP_759976.1 CDS HNE_1258 NC_008358.1 1282784 1285177 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor complement(1282784..1285177) Hyphomonas neptunium ATCC 15444 4288087 YP_759977.1 CDS HNE_1259 NC_008358.1 1285545 1286258 R identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator complement(1285545..1286258) Hyphomonas neptunium ATCC 15444 4290391 YP_759978.1 CDS phoD1 NC_008358.1 1286522 1288225 D identified by match to protein family HMM PF00245; alkaline phosphatase 1286522..1288225 Hyphomonas neptunium ATCC 15444 4288686 YP_759979.1 CDS HNE_1261 NC_008358.1 1288277 1290862 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(1288277..1290862) Hyphomonas neptunium ATCC 15444 4287762 YP_759980.1 CDS HNE_1262 NC_008358.1 1291125 1291631 R hypothetical protein complement(1291125..1291631) Hyphomonas neptunium ATCC 15444 4287386 YP_759981.1 CDS HNE_1263 NC_008358.1 1291683 1293713 D identified by match to protein family HMM PF02518; putative sensor histidine kinase 1291683..1293713 Hyphomonas neptunium ATCC 15444 4289981 YP_759982.1 CDS HNE_1264 NC_008358.1 1293719 1294360 R identified by match to protein family HMM PF00072; match to protein family HMM PF00196; putative DNA-binding response regulator complement(1293719..1294360) Hyphomonas neptunium ATCC 15444 4288903 YP_759983.1 CDS HNE_1265 NC_008358.1 1294441 1295025 D hypothetical protein 1294441..1295025 Hyphomonas neptunium ATCC 15444 4287186 YP_759984.1 CDS HNE_1266 NC_008358.1 1295181 1295594 R hypothetical protein complement(1295181..1295594) Hyphomonas neptunium ATCC 15444 4287628 YP_759985.1 CDS HNE_1267 NC_008358.1 1295259 1295669 D hypothetical protein 1295259..1295669 Hyphomonas neptunium ATCC 15444 4289425 YP_759986.1 CDS HNE_1268 NC_008358.1 1295740 1297101 D identified by similarity to GB:AAN68937.1; hypothetical protein 1295740..1297101 Hyphomonas neptunium ATCC 15444 4289998 YP_759987.1 CDS HNE_1269 NC_008358.1 1297227 1298729 D identified by match to protein family HMM PF00743; monooxygenase flavin-binding family protein 1297227..1298729 Hyphomonas neptunium ATCC 15444 4287290 YP_759988.1 CDS mgtE NC_008358.1 1298787 1300163 D identified by match to protein family HMM PF00571; match to protein family HMM PF01769; match to protein family HMM PF03448; match to protein family HMM TIGR00400; magnesium transporter 1298787..1300163 Hyphomonas neptunium ATCC 15444 4290089 YP_759989.1 CDS HNE_1271 NC_008358.1 1300272 1301537 D identified by match to protein family HMM PF00959; putative lysozyme 1300272..1301537 Hyphomonas neptunium ATCC 15444 4288479 YP_759990.1 CDS ivd2 NC_008358.1 1301577 1302749 D identified by similarity to SP:Q9FS87; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; isovaleryl-CoA dehydrogenase 1301577..1302749 Hyphomonas neptunium ATCC 15444 4289505 YP_759991.1 CDS HNE_1273 NC_008358.1 1302746 1303375 D identified by similarity to GB:AAM43210.1; putative lipoprotein 1302746..1303375 Hyphomonas neptunium ATCC 15444 4289551 YP_759992.1 CDS HNE_1274 NC_008358.1 1303379 1303867 R identified by similarity to GB:AAS03378.1; hypothetical protein complement(1303379..1303867) Hyphomonas neptunium ATCC 15444 4289556 YP_759993.1 CDS HNE_1275 NC_008358.1 1303992 1305959 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase/response regulator complement(1303992..1305959) Hyphomonas neptunium ATCC 15444 4290017 YP_759994.1 CDS HNE_1276 NC_008358.1 1306062 1307840 R identified by match to protein family HMM PF00027; match to protein family HMM PF01734; cyclic nucleotide-binding/patatin-like phospholipase domain-containing protein complement(1306062..1307840) Hyphomonas neptunium ATCC 15444 4288629 YP_759995.1 CDS HNE_1277 NC_008358.1 1307966 1309573 D identified by match to protein family HMM PF01039; carboxyl transferase domain-containing protein 1307966..1309573 Hyphomonas neptunium ATCC 15444 4287422 YP_759996.1 CDS HNE_1278 NC_008358.1 1309632 1310126 R identified by similarity to SP:P80238; putative general stress protein complement(1309632..1310126) Hyphomonas neptunium ATCC 15444 4288792 YP_759997.1 CDS HNE_1279 NC_008358.1 1310325 1310624 D hypothetical protein 1310325..1310624 Hyphomonas neptunium ATCC 15444 4288178 YP_759998.1 CDS HNE_1280 NC_008358.1 1310685 1310780 R hypothetical protein complement(1310685..1310780) Hyphomonas neptunium ATCC 15444 4287287 YP_759999.1 CDS HNE_1281 NC_008358.1 1310833 1311858 D identified by match to protein family HMM PF01757; acyltransferase family protein 1310833..1311858 Hyphomonas neptunium ATCC 15444 4287392 YP_760000.1 CDS HNE_1282 NC_008358.1 1311874 1312674 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 1311874..1312674 Hyphomonas neptunium ATCC 15444 4288111 YP_760001.1 CDS HNE_1283 NC_008358.1 1312691 1313026 R identified by similarity to GB:CAG75918.1; hypothetical protein complement(1312691..1313026) Hyphomonas neptunium ATCC 15444 4288797 YP_760002.1 CDS HNE_1284 NC_008358.1 1313242 1314054 D identified by match to protein family HMM PF05675; hypothetical protein 1313242..1314054 Hyphomonas neptunium ATCC 15444 4287083 YP_760003.1 CDS mccA NC_008358.1 1314026 1315927 D identified by similarity to SP:Q42523; match to protein family HMM PF00289; match to protein family HMM PF00364; match to protein family HMM PF02785; match to protein family HMM PF02786; methylcrotonoyl-CoA carboxylase subunit alpha 1314026..1315927 Hyphomonas neptunium ATCC 15444 4289558 YP_760004.1 CDS HNE_1286 NC_008358.1 1315931 1317730 R identified by similarity to GB:AAL14233.1; match to protein family HMM PF00743; cyclododecanone monooxygenase complement(1315931..1317730) Hyphomonas neptunium ATCC 15444 4287599 YP_760005.1 CDS HNE_1287 NC_008358.1 1317846 1319120 R identified by similarity to GB:CAF29646.1; hypothetical protein complement(1317846..1319120) Hyphomonas neptunium ATCC 15444 4288499 YP_760006.1 CDS HNE_1288 NC_008358.1 1319382 1321316 D identified by match to protein family HMM PF05787; match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1319382..1321316 Hyphomonas neptunium ATCC 15444 4289459 YP_760007.1 CDS HNE_1289 NC_008358.1 1321338 1322858 R identified by match to protein family HMM PF03724; putative lipoprotein complement(1321338..1322858) Hyphomonas neptunium ATCC 15444 4289094 YP_760008.1 CDS HNE_1290 NC_008358.1 1323099 1323839 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein 1323099..1323839 Hyphomonas neptunium ATCC 15444 4287282 YP_760009.1 CDS HNE_1291 NC_008358.1 1323867 1324346 R putative lipoprotein complement(1323867..1324346) Hyphomonas neptunium ATCC 15444 4288291 YP_760010.1 CDS HNE_1292 NC_008358.1 1324475 1325563 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1324475..1325563) Hyphomonas neptunium ATCC 15444 4288917 YP_760011.1 CDS HNE_1293 NC_008358.1 1325751 1326278 D hypothetical protein 1325751..1326278 Hyphomonas neptunium ATCC 15444 4287948 YP_760012.1 CDS amn NC_008358.1 1326469 1327929 D Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase 1326469..1327929 Hyphomonas neptunium ATCC 15444 4288459 YP_760013.1 CDS cdd NC_008358.1 1327938 1328333 D identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354; cytidine deaminase 1327938..1328333 Hyphomonas neptunium ATCC 15444 4290441 YP_760014.1 CDS HNE_1296 NC_008358.1 1328418 1329200 D hypothetical protein 1328418..1329200 Hyphomonas neptunium ATCC 15444 4287729 YP_760015.1 CDS HNE_1297 NC_008358.1 1329328 1329753 D hypothetical protein 1329328..1329753 Hyphomonas neptunium ATCC 15444 4290181 YP_760016.1 CDS HNE_1298 NC_008358.1 1329927 1330340 R hypothetical protein complement(1329927..1330340) Hyphomonas neptunium ATCC 15444 4287784 YP_760017.1 CDS HNE_1299 NC_008358.1 1331462 1332094 R hypothetical protein complement(1331462..1332094) Hyphomonas neptunium ATCC 15444 4288023 YP_760018.1 CDS HNE_1300 NC_008358.1 1332091 1332975 R identified by match to protein family HMM PF01656; CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein complement(1332091..1332975) Hyphomonas neptunium ATCC 15444 4287408 YP_760019.1 CDS HNE_1301 NC_008358.1 1333574 1333807 R hypothetical protein complement(1333574..1333807) Hyphomonas neptunium ATCC 15444 4288525 YP_760020.1 CDS HNE_1302 NC_008358.1 1334705 1335637 D identified by match to protein family HMM PF00226; match to protein family HMM PF01556; molecuar chaperone DnaJ 1334705..1335637 Hyphomonas neptunium ATCC 15444 4290170 YP_760021.1 CDS HNE_1303 NC_008358.1 1335738 1337462 D identified by similarity to GB:BAC90684.1; hypothetical protein 1335738..1337462 Hyphomonas neptunium ATCC 15444 4289247 YP_760022.1 CDS HNE_1304 NC_008358.1 1337487 1338191 R hypothetical protein complement(1337487..1338191) Hyphomonas neptunium ATCC 15444 4288361 YP_760023.1 CDS HNE_1305 NC_008358.1 1338426 1338752 D identified by similarity to GB:AAK24731.1; hypothetical protein 1338426..1338752 Hyphomonas neptunium ATCC 15444 4290418 YP_760024.1 CDS HNE_1306 NC_008358.1 1338783 1339466 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 1338783..1339466 Hyphomonas neptunium ATCC 15444 4289359 YP_760025.1 CDS HNE_1307 NC_008358.1 1339492 1340919 D identified by match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 1339492..1340919 Hyphomonas neptunium ATCC 15444 4287055 YP_760026.1 CDS HNE_1308 NC_008358.1 1340997 1341509 D identified by match to protein family HMM PF07719; hypothetical protein 1340997..1341509 Hyphomonas neptunium ATCC 15444 4289330 YP_760027.1 CDS ccmE NC_008358.1 1341563 1341988 D identified by match to protein family HMM PF03100; cytochrome c-type biogenesis protein CcmE 1341563..1341988 Hyphomonas neptunium ATCC 15444 4287035 YP_760028.1 CDS ccmF NC_008358.1 1341985 1343892 D identified by similarity to SP:P33927; match to protein family HMM PF01578; cytochrome c-type biogenesis protein CcmF 1341985..1343892 Hyphomonas neptunium ATCC 15444 4287072 YP_760029.1 CDS HNE_1311 NC_008358.1 1343867 1345420 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1343867..1345420) Hyphomonas neptunium ATCC 15444 4290103 YP_760030.1 CDS HNE_1312 NC_008358.1 1345454 1346161 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1345454..1346161) Hyphomonas neptunium ATCC 15444 4288670 YP_760031.1 CDS HNE_1313 NC_008358.1 1346194 1347732 R identified by similarity to GB:AAC43718.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Do family protease complement(1346194..1347732) Hyphomonas neptunium ATCC 15444 4289293 YP_760032.1 CDS HNE_1314 NC_008358.1 1347886 1348284 R identified by similarity to SP:P45405; match to protein family HMM PF03918; cytochrome C biogenesis protein complement(1347886..1348284) Hyphomonas neptunium ATCC 15444 4289668 YP_760033.1 CDS HNE_1315 NC_008358.1 1348338 1348769 R identified by similarity to GB:CAC46696.1; hypothetical protein complement(1348338..1348769) Hyphomonas neptunium ATCC 15444 4288982 YP_760034.1 CDS glnE NC_008358.1 1348880 1351639 D identified by match to protein family HMM PF03710; glutamate ammonia ligase adenylyl-transferase 1348880..1351639 Hyphomonas neptunium ATCC 15444 4288408 YP_760035.1 CDS HNE_1317 NC_008358.1 1351685 1352284 D EF hand domain-containing protein 1351685..1352284 Hyphomonas neptunium ATCC 15444 4287664 YP_760036.1 CDS HNE_1318 NC_008358.1 1352385 1352930 D identified by similarity to SP:Q45585; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor 1352385..1352930 Hyphomonas neptunium ATCC 15444 4287096 YP_760037.1 CDS HNE_1319 NC_008358.1 1352927 1353382 D identified by similarity to GB:AAK24714.1; hypothetical protein 1352927..1353382 Hyphomonas neptunium ATCC 15444 4287269 YP_760038.1 CDS HNE_1320 NC_008358.1 1353379 1353900 D hypothetical protein 1353379..1353900 Hyphomonas neptunium ATCC 15444 4289796 YP_760039.1 CDS HNE_1321 NC_008358.1 1353897 1354331 R identified by similarity to GB:BAC91546.1; match to protein family HMM PF04828; hypothetical protein complement(1353897..1354331) Hyphomonas neptunium ATCC 15444 4288437 YP_760040.1 CDS HNE_1322 NC_008358.1 1354295 1355743 R identified by similarity to SP:P13397; match to protein family HMM PF01425; 6-aminohexanoate-cyclic-dimer hydrolase complement(1354295..1355743) Hyphomonas neptunium ATCC 15444 4289472 YP_760041.1 CDS HNE_1323 NC_008358.1 1355984 1357357 D identified by similarity to GB:BAA32063.1; match to protein family HMM PF02386; TrkH family potassium uptake protein 1355984..1357357 Hyphomonas neptunium ATCC 15444 4287489 YP_760042.1 CDS HNE_1324 NC_008358.1 1357387 1357791 R identified by similarity to GB:AAK25445.1; match to protein family HMM PF06262; hypothetical protein complement(1357387..1357791) Hyphomonas neptunium ATCC 15444 4288507 YP_760043.1 CDS HNE_1325 NC_008358.1 1357788 1358108 R identified by similarity to GB:AAS81236.1; match to protein family HMM PF01906; hypothetical protein complement(1357788..1358108) Hyphomonas neptunium ATCC 15444 4290007 YP_760044.1 CDS mutB NC_008358.1 1358128 1360290 R MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase complement(1358128..1360290) Hyphomonas neptunium ATCC 15444 4288516 YP_760045.1 CDS mutA NC_008358.1 1360287 1362206 R identified by similarity to SP:Q05064; match to protein family HMM PF01642; methylmalonyl-CoA mutase small subunit complement(1360287..1362206) Hyphomonas neptunium ATCC 15444 4287770 YP_760046.1 CDS HNE_1328 NC_008358.1 1362407 1362661 D hypothetical protein 1362407..1362661 Hyphomonas neptunium ATCC 15444 4289665 YP_760047.1 CDS HNE_1329 NC_008358.1 1362968 1363966 D identified by match to protein family HMM PF03060; 2-nitropropane dioxygenase 1362968..1363966 Hyphomonas neptunium ATCC 15444 4287212 YP_760048.1 CDS HNE_1330 NC_008358.1 1364260 1364667 D identified by similarity to GB:AAP48785.1; hypothetical protein 1364260..1364667 Hyphomonas neptunium ATCC 15444 4289373 YP_760049.1 CDS HNE_1331 NC_008358.1 1364664 1365125 D hypothetical protein 1364664..1365125 Hyphomonas neptunium ATCC 15444 4287561 YP_760050.1 CDS map2 NC_008358.1 1365251 1366042 R identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(1365251..1366042) Hyphomonas neptunium ATCC 15444 4287189 YP_760051.1 CDS HNE_1333 NC_008358.1 1366039 1366251 R identified by similarity to GB:AAV82898.1; hypothetical protein complement(1366039..1366251) Hyphomonas neptunium ATCC 15444 4289360 YP_760052.1 CDS HNE_1334 NC_008358.1 1366391 1367755 D identified by match to protein family HMM PF01425; amidase family protein 1366391..1367755 Hyphomonas neptunium ATCC 15444 4289447 YP_760053.1 CDS glpK NC_008358.1 1367752 1369233 D identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01311; glycerol kinase 1367752..1369233 Hyphomonas neptunium ATCC 15444 4289555 YP_760054.1 CDS HNE_1336 NC_008358.1 1369307 1371328 R identified by match to protein family HMM PF00326; match to protein family HMM PF02230; S9 family peptidase complement(1369307..1371328) Hyphomonas neptunium ATCC 15444 4290488 YP_760055.1 CDS HNE_1337 NC_008358.1 1371644 1374640 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1371644..1374640 Hyphomonas neptunium ATCC 15444 4288120 YP_760056.1 CDS HNE_1338 NC_008358.1 1374767 1376086 D identified by match to protein family HMM PF00324; amino acid permease family protein 1374767..1376086 Hyphomonas neptunium ATCC 15444 4289754 YP_760057.1 CDS HNE_1339 NC_008358.1 1376170 1376397 D hypothetical protein 1376170..1376397 Hyphomonas neptunium ATCC 15444 4287633 YP_760058.1 CDS HNE_1340 NC_008358.1 1376397 1376720 D hypothetical protein 1376397..1376720 Hyphomonas neptunium ATCC 15444 4289974 YP_760059.1 CDS HNE_1342 NC_008358.1 1377007 1377156 D hypothetical protein 1377007..1377156 Hyphomonas neptunium ATCC 15444 4289208 YP_760060.1 CDS HNE_1343 NC_008358.1 1377163 1378389 D identified by match to protein family HMM PF00067; cytochrome P450 family protein 1377163..1378389 Hyphomonas neptunium ATCC 15444 4288234 YP_760061.1 CDS murA NC_008358.1 1378444 1379724 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1378444..1379724 Hyphomonas neptunium ATCC 15444 4287619 YP_760062.1 CDS HNE_1345 NC_008358.1 1379819 1380304 D identified by similarity to GB:AAK24320.1; hypothetical protein 1379819..1380304 Hyphomonas neptunium ATCC 15444 4289308 YP_760063.1 CDS hisD NC_008358.1 1380402 1381700 D identified by match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase 1380402..1381700 Hyphomonas neptunium ATCC 15444 4288444 YP_760064.1 CDS HNE_1347 NC_008358.1 1381705 1382193 D identified by similarity to SP:Q8YF58; match to protein family HMM PF06793; hypothetical protein 1381705..1382193 Hyphomonas neptunium ATCC 15444 4289442 YP_760065.1 CDS HNE_1348 NC_008358.1 1382160 1383161 R identified by similarity to GB:CAD17123.1; match to protein family HMM PF01370; hypothetical protein complement(1382160..1383161) Hyphomonas neptunium ATCC 15444 4288214 YP_760066.1 CDS HNE_1349 NC_008358.1 1383258 1384166 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1383258..1384166 Hyphomonas neptunium ATCC 15444 4290460 YP_760067.1 CDS HNE_1350 NC_008358.1 1384163 1384987 R identified by match to protein family HMM PF00487; fatty acid desaturase family protein complement(1384163..1384987) Hyphomonas neptunium ATCC 15444 4287091 YP_760068.1 CDS HNE_1351 NC_008358.1 1385023 1385238 R hypothetical protein complement(1385023..1385238) Hyphomonas neptunium ATCC 15444 4289484 YP_760069.1 CDS HNE_1352 NC_008358.1 1385302 1386189 R identified by match to protein family HMM PF04397; putative DNA-binding protein complement(1385302..1386189) Hyphomonas neptunium ATCC 15444 4287755 YP_760070.1 CDS HNE_1353 NC_008358.1 1386300 1387472 D identified by match to protein family HMM PF01757; acyltransferase family protein 1386300..1387472 Hyphomonas neptunium ATCC 15444 4288541 YP_760071.1 CDS infA NC_008358.1 1387584 1387802 D identified by match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008; translation initiation factor IF-1 1387584..1387802 Hyphomonas neptunium ATCC 15444 4287481 YP_760072.1 CDS maf NC_008358.1 1387808 1388383 D identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 1387808..1388383 Hyphomonas neptunium ATCC 15444 4287367 YP_760073.1 CDS HNE_1356 NC_008358.1 1388510 1389271 D hypothetical protein 1388510..1389271 Hyphomonas neptunium ATCC 15444 4290399 YP_760074.1 CDS HNE_1357 NC_008358.1 1389359 1389706 R hypothetical protein complement(1389359..1389706) Hyphomonas neptunium ATCC 15444 4287340 YP_760075.1 CDS HNE_1358 NC_008358.1 1389720 1390256 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor complement(1389720..1390256) Hyphomonas neptunium ATCC 15444 4289305 YP_760076.1 CDS HNE_1359 NC_008358.1 1390564 1390713 D hypothetical protein 1390564..1390713 Hyphomonas neptunium ATCC 15444 4289446 YP_760077.1 CDS HNE_1360 NC_008358.1 1390847 1391560 D identified by similarity to GB:AAK22293.1; hypothetical protein 1390847..1391560 Hyphomonas neptunium ATCC 15444 4287905 YP_760078.1 CDS HNE_1361 NC_008358.1 1391624 1391941 D putative lipoprotein 1391624..1391941 Hyphomonas neptunium ATCC 15444 4289924 YP_760079.1 CDS HNE_1362 NC_008358.1 1392063 1392338 D hypothetical protein 1392063..1392338 Hyphomonas neptunium ATCC 15444 4288638 YP_760080.1 CDS HNE_1363 NC_008358.1 1392447 1392833 D identified by similarity to GB:AAK22297.1; hypothetical protein 1392447..1392833 Hyphomonas neptunium ATCC 15444 4289192 YP_760081.1 CDS pmbA NC_008358.1 1393000 1394346 D identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein 1393000..1394346 Hyphomonas neptunium ATCC 15444 4290346 YP_760082.1 CDS HNE_1365 NC_008358.1 1394375 1395469 D identified by match to protein family HMM PF00459; inositol monophosphatase family protein 1394375..1395469 Hyphomonas neptunium ATCC 15444 4288685 YP_760083.1 CDS HNE_1366 NC_008358.1 1395420 1397246 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; efflux ABC transporter permease/ATP-binding protein 1395420..1397246 Hyphomonas neptunium ATCC 15444 4289570 YP_760084.1 CDS HNE_1367 NC_008358.1 1397251 1397916 R identified by similarity to GB:AAC18100.1; match to protein family HMM PF01323; putative frnE protein complement(1397251..1397916) Hyphomonas neptunium ATCC 15444 4289936 YP_760085.1 CDS ubiA NC_008358.1 1397975 1399102 R identified by match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate polyprenyltransferase complement(1397975..1399102) Hyphomonas neptunium ATCC 15444 4288124 YP_760086.1 CDS HNE_1369 NC_008358.1 1399220 1399990 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1399220..1399990 Hyphomonas neptunium ATCC 15444 4290472 YP_760087.1 CDS HNE_1370 NC_008358.1 1400058 1401248 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(1400058..1401248) Hyphomonas neptunium ATCC 15444 4289409 YP_760088.1 CDS HNE_1371 NC_008358.1 1401263 1402297 R identified by match to protein family HMM PF00248; dimethylsulfoxide reductase chain B complement(1401263..1402297) Hyphomonas neptunium ATCC 15444 4290062 YP_760089.1 CDS HNE_1372 NC_008358.1 1402384 1403286 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1402384..1403286 Hyphomonas neptunium ATCC 15444 4289809 YP_760090.1 CDS HNE_1373 NC_008358.1 1403307 1403837 R identified by match to protein family HMM PF01872; riboflavin biosynthesis protein RibD domain-containing protein complement(1403307..1403837) Hyphomonas neptunium ATCC 15444 4288744 YP_760091.1 CDS HNE_1374 NC_008358.1 1404174 1405550 D identified by match to protein family HMM PF04107; match to protein family HMM TIGR01436; glutamate--cysteine ligase 1404174..1405550 Hyphomonas neptunium ATCC 15444 4288326 YP_760092.1 CDS HNE_1375 NC_008358.1 1405589 1406263 D identified by similarity to GB:BAC90439.1; match to protein family HMM PF02586; hypothetical protein 1405589..1406263 Hyphomonas neptunium ATCC 15444 4288379 YP_760093.1 CDS HNE_1376 NC_008358.1 1406411 1408435 D identified by similarity to SP:P36574; match to protein family HMM PF00854; match to protein family HMM TIGR00924; proton/peptide symporter family protein 1406411..1408435 Hyphomonas neptunium ATCC 15444 4288991 YP_760094.1 CDS HNE_1377 NC_008358.1 1408518 1409804 R identified by match to protein family HMM PF00924; small conductance mechanosensitive ion channel (MscS) family protein complement(1408518..1409804) Hyphomonas neptunium ATCC 15444 4288421 YP_760095.1 CDS HNE_1378 NC_008358.1 1409910 1410446 R identified by match to protein family HMM PF00849; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein complement(1409910..1410446) Hyphomonas neptunium ATCC 15444 4288934 YP_760096.1 CDS panD NC_008358.1 1410647 1411003 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 1410647..1411003 Hyphomonas neptunium ATCC 15444 4287535 YP_760097.1 CDS HNE_1380 NC_008358.1 1411034 1411495 R identified by similarity to SP:P13111; match to protein family HMM PF00376; MerR family transcriptional regulator complement(1411034..1411495) Hyphomonas neptunium ATCC 15444 4289645 YP_760098.1 CDS HNE_1381 NC_008358.1 1411500 1412294 D hypothetical protein 1411500..1412294 Hyphomonas neptunium ATCC 15444 4289130 YP_760099.1 CDS HNE_1382 NC_008358.1 1412331 1413335 R identified by match to protein family HMM PF00296; luciferase family monooxygenase complement(1412331..1413335) Hyphomonas neptunium ATCC 15444 4289835 YP_760100.1 CDS HNE_1383 NC_008358.1 1413457 1414503 R identified by similarity to GB:AAK22478.1; match to protein family HMM PF02636; hypothetical protein complement(1413457..1414503) Hyphomonas neptunium ATCC 15444 4288538 YP_760101.1 CDS lgt NC_008358.1 1414500 1415429 R identified by match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase complement(1414500..1415429) Hyphomonas neptunium ATCC 15444 4288643 YP_760102.1 CDS HNE_1385 NC_008358.1 1415537 1415791 D hypothetical protein 1415537..1415791 Hyphomonas neptunium ATCC 15444 4287659 YP_760103.1 CDS HNE_1386 NC_008358.1 1415903 1416406 D identified by similarity to GB:AAK22480.1; hypothetical protein 1415903..1416406 Hyphomonas neptunium ATCC 15444 4287865 YP_760104.1 CDS proC NC_008358.1 1416416 1417222 D identified by match to protein family HMM PF02558; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase 1416416..1417222 Hyphomonas neptunium ATCC 15444 4287451 YP_760105.1 CDS HNE_1388 NC_008358.1 1417243 1417869 D hypothetical protein 1417243..1417869 Hyphomonas neptunium ATCC 15444 4288150 YP_760106.1 CDS HNE_1389 NC_008358.1 1417866 1418957 D identified by similarity to GB:BAD57439.1; hypothetical protein 1417866..1418957 Hyphomonas neptunium ATCC 15444 4289584 YP_760107.1 CDS HNE_1390 NC_008358.1 1419207 1419512 D identified by similarity to PIR:E97651; match to protein family HMM PF06627; hypothetical protein 1419207..1419512 Hyphomonas neptunium ATCC 15444 4290063 YP_760108.1 CDS HNE_1391 NC_008358.1 1419609 1420277 D hypothetical protein 1419609..1420277 Hyphomonas neptunium ATCC 15444 4288195 YP_760109.1 CDS HNE_1392 NC_008358.1 1420274 1421230 D identified by similarity to GB:AAF35849.1; match to protein family HMM PF01706; putative flagellar motor switch protein FliG 1420274..1421230 Hyphomonas neptunium ATCC 15444 4288690 YP_760110.1 CDS HNE_1393 NC_008358.1 1421230 1421643 D hypothetical protein 1421230..1421643 Hyphomonas neptunium ATCC 15444 4287701 YP_760111.1 CDS fliN NC_008358.1 1421640 1421909 D identified by similarity to GB:AAA23038.1; match to protein family HMM PF01052; match to protein family HMM TIGR02480; flagellar motor switch protein FliN 1421640..1421909 Hyphomonas neptunium ATCC 15444 4287898 YP_760112.1 CDS phhA NC_008358.1 1421958 1422839 D phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase 1421958..1422839 Hyphomonas neptunium ATCC 15444 4289737 YP_760113.1 CDS pth NC_008358.1 1422836 1423459 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1422836..1423459) Hyphomonas neptunium ATCC 15444 4287384 YP_760114.1 CDS HNE_1397 NC_008358.1 1423542 1424201 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(1423542..1424201) Hyphomonas neptunium ATCC 15444 4287645 YP_760115.1 CDS HNE_1398 NC_008358.1 1424368 1425291 R identified by match to protein family HMM PF00144; beta-lactamase complement(1424368..1425291) Hyphomonas neptunium ATCC 15444 4288109 YP_760116.1 CDS HNE_1399 NC_008358.1 1425405 1426397 R identified by match to protein family HMM PF04909; amidohydrolase family protein complement(1425405..1426397) Hyphomonas neptunium ATCC 15444 4289177 YP_760117.1 CDS HNE_1400 NC_008358.1 1426597 1426875 D hypothetical protein 1426597..1426875 Hyphomonas neptunium ATCC 15444 4289432 YP_760118.1 CDS HNE_1401 NC_008358.1 1426885 1428666 D identified by match to protein family HMM PF00474; solute/sodium symporter (SSS) family protein 1426885..1428666 Hyphomonas neptunium ATCC 15444 4288351 YP_760119.1 CDS acsA NC_008358.1 1428780 1430726 D identified by match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetate--CoA ligase 1428780..1430726 Hyphomonas neptunium ATCC 15444 4289611 YP_760120.1 CDS HNE_1403 NC_008358.1 1430821 1431798 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 1430821..1431798 Hyphomonas neptunium ATCC 15444 4287963 YP_760121.1 CDS chvG NC_008358.1 1431795 1433429 R identified by similarity to SP:Q07737; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase ChvG complement(1431795..1433429) Hyphomonas neptunium ATCC 15444 4287857 YP_760122.1 CDS HNE_1405 NC_008358.1 1433429 1433893 R identified by match to protein family HMM PF00160; putative peptidyl-prolyl cis-trans isomerase, cyclophilin-type complement(1433429..1433893) Hyphomonas neptunium ATCC 15444 4288430 YP_760123.1 CDS HNE_1406 NC_008358.1 1434011 1434484 D hypothetical protein 1434011..1434484 Hyphomonas neptunium ATCC 15444 4287257 YP_760124.1 CDS HNE_1407 NC_008358.1 1434481 1435080 R hypothetical protein complement(1434481..1435080) Hyphomonas neptunium ATCC 15444 4290401 YP_760125.1 CDS chvI NC_008358.1 1435034 1435810 R identified by similarity to SP:P50350; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator ChvI complement(1435034..1435810) Hyphomonas neptunium ATCC 15444 4287194 YP_760126.1 CDS HNE_1409 NC_008358.1 1435952 1436968 R identified by match to protein family HMM PF00291; pyridoxal-phosphate-dependent enzyme complement(1435952..1436968) Hyphomonas neptunium ATCC 15444 4288498 YP_760127.1 CDS HNE_1410 NC_008358.1 1437501 1438778 D identified by similarity to GB:CAG23089.1; match to protein family HMM TIGR01352; TonB family protein 1437501..1438778 Hyphomonas neptunium ATCC 15444 4290038 YP_760128.1 CDS ilvD NC_008358.1 1438809 1440650 R identified by similarity to SP:P05791; match to protein family HMM PF00920; match to protein family HMM TIGR00110; dihydroxy-acid dehydratase complement(1438809..1440650) Hyphomonas neptunium ATCC 15444 4289415 YP_760129.1 CDS polA NC_008358.1 1440776 1443565 R identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(1440776..1443565) Hyphomonas neptunium ATCC 15444 4289511 YP_760130.1 CDS HNE_1413 NC_008358.1 1443734 1444207 D hypothetical protein 1443734..1444207 Hyphomonas neptunium ATCC 15444 4288550 YP_760131.1 CDS HNE_1414 NC_008358.1 1444292 1444732 D hypothetical protein 1444292..1444732 Hyphomonas neptunium ATCC 15444 4288856 YP_760132.1 CDS HNE_1415 NC_008358.1 1444779 1445804 D identified by similarity to SP:P76113; match to protein family HMM PF00107; L4BD family NADP-dependent oxidoreductase 1444779..1445804 Hyphomonas neptunium ATCC 15444 4289138 YP_760133.1 CDS HNE_1416 NC_008358.1 1445876 1446244 D putative lipoprotein 1445876..1446244 Hyphomonas neptunium ATCC 15444 4289148 YP_760134.1 CDS HNE_1417 NC_008358.1 1446332 1447105 D putative lipoprotein 1446332..1447105 Hyphomonas neptunium ATCC 15444 4288260 YP_760135.1 CDS metC NC_008358.1 1447108 1448277 R identified by match to protein family HMM PF01053; match to protein family HMM TIGR01324; cystathionine beta-lyase complement(1447108..1448277) Hyphomonas neptunium ATCC 15444 4289758 YP_760136.1 CDS HNE_1419 NC_008358.1 1448282 1449124 R identified by match to protein family HMM PF00581; putative sulfurtransferase complement(1448282..1449124) Hyphomonas neptunium ATCC 15444 4287647 YP_760137.1 CDS HNE_1420 NC_008358.1 1449124 1450131 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(1449124..1450131) Hyphomonas neptunium ATCC 15444 4287924 YP_760138.1 CDS HNE_1421 NC_008358.1 1450124 1450972 D hypothetical protein 1450124..1450972 Hyphomonas neptunium ATCC 15444 4290182 YP_760139.1 CDS HNE_1422 NC_008358.1 1450991 1452529 D identified by match to protein family HMM PF04244; deoxyribodipyrimidine photolyase-like protein 1450991..1452529 Hyphomonas neptunium ATCC 15444 4286993 YP_760140.1 CDS HNE_1423 NC_008358.1 1452665 1455043 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; putative sensory box-containing diguanylate cyclase 1452665..1455043 Hyphomonas neptunium ATCC 15444 4288879 YP_760141.1 CDS HNE_1424 NC_008358.1 1455079 1457922 R identified by match to protein family HMM PF05170; AsmA family protein complement(1455079..1457922) Hyphomonas neptunium ATCC 15444 4288928 YP_760142.1 CDS HNE_1426 NC_008358.1 1458379 1458489 R hypothetical protein complement(1458379..1458489) Hyphomonas neptunium ATCC 15444 4289568 YP_760143.1 CDS HNE_1427 NC_008358.1 1458643 1459236 R identified by similarity to GB:CAH14296.1; hypothetical protein complement(1458643..1459236) Hyphomonas neptunium ATCC 15444 4288588 YP_760144.1 CDS HNE_1428 NC_008358.1 1459571 1459801 D identified by match to protein family HMM PF01381; DNA-binding protein 1459571..1459801 Hyphomonas neptunium ATCC 15444 4287201 YP_760145.1 CDS HNE_1429 NC_008358.1 1459912 1460214 R hypothetical protein complement(1459912..1460214) Hyphomonas neptunium ATCC 15444 4288635 YP_760146.1 CDS HNE_1430 NC_008358.1 1460242 1461351 D identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1460242..1461351 Hyphomonas neptunium ATCC 15444 4287699 YP_760147.1 CDS HNE_1431 NC_008358.1 1461493 1462122 R putative lipoprotein complement(1461493..1462122) Hyphomonas neptunium ATCC 15444 4290415 YP_760148.1 CDS HNE_1432 NC_008358.1 1462127 1463761 R identified by match to protein family HMM PF00691; OmpA family membrane protein complement(1462127..1463761) Hyphomonas neptunium ATCC 15444 4289216 YP_760149.1 CDS HNE_1433 NC_008358.1 1463761 1465443 R hypothetical protein complement(1463761..1465443) Hyphomonas neptunium ATCC 15444 4287466 YP_760150.1 CDS HNE_1434 NC_008358.1 1465973 1466209 D hypothetical protein 1465973..1466209 Hyphomonas neptunium ATCC 15444 4287842 YP_760151.1 CDS linC NC_008358.1 1466483 1467235 D identified by similarity to SP:P50197; match to protein family HMM PF00106; short chain dehydrogenase 1466483..1467235 Hyphomonas neptunium ATCC 15444 4287965 YP_760152.1 CDS HNE_1436 NC_008358.1 1467367 1469118 R identified by similarity to GB:BAA24454.1; match to protein family HMM PF00743; putative steroid monooxygenase complement(1467367..1469118) Hyphomonas neptunium ATCC 15444 4288977 YP_760153.1 CDS HNE_1437 NC_008358.1 1469285 1470403 R hypothetical protein complement(1469285..1470403) Hyphomonas neptunium ATCC 15444 4288133 YP_760154.1 CDS HNE_1438 NC_008358.1 1469597 1470634 D hypothetical protein 1469597..1470634 Hyphomonas neptunium ATCC 15444 4290313 YP_760155.1 CDS HNE_1439 NC_008358.1 1470648 1470902 R hypothetical protein complement(1470648..1470902) Hyphomonas neptunium ATCC 15444 4288822 YP_760156.1 CDS HNE_1440 NC_008358.1 1470924 1471232 R identified by similarity to PIR:AD3172; match to protein family HMM PF05284; hypothetical protein complement(1470924..1471232) Hyphomonas neptunium ATCC 15444 4287192 YP_760157.1 CDS HNE_1441 NC_008358.1 1471568 1471813 D hypothetical protein 1471568..1471813 Hyphomonas neptunium ATCC 15444 4288706 YP_760158.1 CDS HNE_1442 NC_008358.1 1471810 1472061 D hypothetical protein 1471810..1472061 Hyphomonas neptunium ATCC 15444 4288208 YP_760159.1 CDS HNE_1443 NC_008358.1 1472225 1473259 D identified by similarity to GB:AAK22927.1; hypothetical protein 1472225..1473259 Hyphomonas neptunium ATCC 15444 4288287 YP_760160.1 CDS HNE_1444 NC_008358.1 1473828 1474667 D identified by similarity to GB:BAB52523.1; hypothetical protein 1473828..1474667 Hyphomonas neptunium ATCC 15444 4288411 YP_760161.1 CDS HNE_1445 NC_008358.1 1474788 1476200 D identified by match to protein family HMM PF02534; TraG/TraD family protein 1474788..1476200 Hyphomonas neptunium ATCC 15444 4288616 YP_760162.1 CDS HNE_1447 NC_008358.1 1476487 1476990 D identified by match to protein family HMM PF00565; nuclease domain-containing protein 1476487..1476990 Hyphomonas neptunium ATCC 15444 4288487 YP_760163.1 CDS HNE_1448 NC_008358.1 1476997 1477329 R identified by similarity to GB:AAV96142.1; hypothetical protein complement(1476997..1477329) Hyphomonas neptunium ATCC 15444 4288313 YP_760164.1 CDS HNE_1449 NC_008358.1 1477320 1477733 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 1477320..1477733 Hyphomonas neptunium ATCC 15444 4289856 YP_760165.1 CDS HNE_1450 NC_008358.1 1478108 1478332 R hypothetical protein complement(1478108..1478332) Hyphomonas neptunium ATCC 15444 4287486 YP_760166.1 CDS HNE_1451 NC_008358.1 1478338 1479855 R identified by match to protein family HMM PF00890; FAD-binding domain-containing protein complement(1478338..1479855) Hyphomonas neptunium ATCC 15444 4289674 YP_760167.1 CDS HNE_1452 NC_008358.1 1479887 1480837 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1479887..1480837 Hyphomonas neptunium ATCC 15444 4287153 YP_760168.1 CDS HNE_1453 NC_008358.1 1480851 1481159 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(1480851..1481159) Hyphomonas neptunium ATCC 15444 4288092 YP_760169.1 CDS HNE_1454 NC_008358.1 1481195 1481878 R hypothetical protein complement(1481195..1481878) Hyphomonas neptunium ATCC 15444 4289993 YP_760170.1 CDS HNE_1455 NC_008358.1 1481851 1482645 R hypothetical protein complement(1481851..1482645) Hyphomonas neptunium ATCC 15444 4287783 YP_760171.1 CDS HNE_1456 NC_008358.1 1482988 1484316 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(1482988..1484316) Hyphomonas neptunium ATCC 15444 4289609 YP_760172.1 CDS HNE_1457 NC_008358.1 1484477 1484713 D hypothetical protein 1484477..1484713 Hyphomonas neptunium ATCC 15444 4287037 YP_760173.1 CDS HNE_1458 NC_008358.1 1484703 1484903 R hypothetical protein complement(1484703..1484903) Hyphomonas neptunium ATCC 15444 4288765 YP_760174.1 CDS HNE_1459 NC_008358.1 1485031 1485963 D identified by similarity to SP:P32064; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1485031..1485963 Hyphomonas neptunium ATCC 15444 4290463 YP_760175.1 CDS HNE_1460 NC_008358.1 1485972 1486259 R identified by similarity to GB:BAC45755.1; match to protein family HMM PF07045; hypothetical protein complement(1485972..1486259) Hyphomonas neptunium ATCC 15444 4287139 YP_760176.1 CDS HNE_1461 NC_008358.1 1486256 1486660 R hypothetical protein complement(1486256..1486660) Hyphomonas neptunium ATCC 15444 4289808 YP_760177.1 CDS HNE_1462 NC_008358.1 1486865 1487320 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 1486865..1487320 Hyphomonas neptunium ATCC 15444 4288426 YP_760178.1 CDS HNE_1463 NC_008358.1 1487378 1487842 D identified by match to protein family HMM PF07883; cupin domain-containing protein 1487378..1487842 Hyphomonas neptunium ATCC 15444 4288552 YP_760179.1 CDS HNE_1465 NC_008358.1 1488591 1489853 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1488591..1489853) Hyphomonas neptunium ATCC 15444 4290098 YP_760180.1 CDS HNE_1466 NC_008358.1 1490094 1492463 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB dependent receptor 1490094..1492463 Hyphomonas neptunium ATCC 15444 4289635 YP_760181.1 CDS HNE_1467 NC_008358.1 1492582 1493844 D identified by match to protein family HMM PF00144; beta-lactamase 1492582..1493844 Hyphomonas neptunium ATCC 15444 4290497 YP_760182.1 CDS HNE_1468 NC_008358.1 1494075 1494995 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1494075..1494995 Hyphomonas neptunium ATCC 15444 4289538 YP_760183.1 CDS HNE_1469 NC_008358.1 1495006 1495707 R identified by match to protein family HMM PF00027; cyclic nucleotide-binding protein complement(1495006..1495707) Hyphomonas neptunium ATCC 15444 4290384 YP_760184.1 CDS HNE_1470 NC_008358.1 1495892 1498114 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB dependent receptor 1495892..1498114 Hyphomonas neptunium ATCC 15444 4288464 YP_760185.1 CDS HNE_1471 NC_008358.1 1498175 1499554 D identified by similarity to OMNI:PIN0532; hypothetical protein 1498175..1499554 Hyphomonas neptunium ATCC 15444 4288453 YP_760186.1 CDS HNE_1472 NC_008358.1 1499592 1499900 D identified by similarity to GB:CAE31223.1; hypothetical protein 1499592..1499900 Hyphomonas neptunium ATCC 15444 4289372 YP_760187.1 CDS HNE_1473 NC_008358.1 1499960 1500718 D identified by match to protein family HMM PF00596; class II aldolase 1499960..1500718 Hyphomonas neptunium ATCC 15444 4287739 YP_760188.1 CDS HNE_1474 NC_008358.1 1500784 1502181 D identified by match to protein family HMM PF07690; major facilitator family transporter 1500784..1502181 Hyphomonas neptunium ATCC 15444 4290331 YP_760189.1 CDS HNE_1475 NC_008358.1 1502482 1503495 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(1502482..1503495) Hyphomonas neptunium ATCC 15444 4287302 YP_760190.1 CDS leuD NC_008358.1 1503517 1504122 R identified by match to protein family HMM PF00694; match to protein family HMM TIGR00171; 3-isopropylmalate dehydratase small subunit complement(1503517..1504122) Hyphomonas neptunium ATCC 15444 4289987 YP_760191.1 CDS leuC2 NC_008358.1 1504112 1505542 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(1504112..1505542) Hyphomonas neptunium ATCC 15444 4287572 YP_760192.1 CDS HNE_1478 NC_008358.1 1505634 1505747 D hypothetical protein 1505634..1505747 Hyphomonas neptunium ATCC 15444 4288346 YP_760193.1 CDS HNE_1479 NC_008358.1 1505868 1507838 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1505868..1507838) Hyphomonas neptunium ATCC 15444 4287521 YP_760194.1 CDS HNE_1480 NC_008358.1 1508304 1508531 R hypothetical protein complement(1508304..1508531) Hyphomonas neptunium ATCC 15444 4288181 YP_760195.1 CDS HNE_1481 NC_008358.1 1508639 1509217 R identified by similarity to GB:AAN62204.1; match to protein family HMM PF03713; hypothetical protein complement(1508639..1509217) Hyphomonas neptunium ATCC 15444 4287819 YP_760196.1 CDS HNE_1482 NC_008358.1 1509436 1510770 R identified by similarity to GB:CAI09940.1; hypothetical protein complement(1509436..1510770) Hyphomonas neptunium ATCC 15444 4288377 YP_760197.1 CDS HNE_1483 NC_008358.1 1511028 1513418 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1511028..1513418) Hyphomonas neptunium ATCC 15444 4288778 YP_760198.1 CDS copB NC_008358.1 1513670 1514467 R identified by match to protein family HMM PF05275; copper resistance protein B complement(1513670..1514467) Hyphomonas neptunium ATCC 15444 4289218 YP_760199.1 CDS HNE_1485 NC_008358.1 1514467 1516311 R identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480; CopA family copper resistance protein complement(1514467..1516311) Hyphomonas neptunium ATCC 15444 4288625 YP_760200.1 CDS HNE_1486 NC_008358.1 1516382 1517089 R identified by similarity to SP:P77214; hypothetical protein complement(1516382..1517089) Hyphomonas neptunium ATCC 15444 4290449 YP_760201.1 CDS HNE_1487 NC_008358.1 1517631 1517906 D identified by similarity to GB:CAE27102.1; match to protein family HMM PF02583; hypothetical protein 1517631..1517906 Hyphomonas neptunium ATCC 15444 4287469 YP_760202.1 CDS HNE_1488 NC_008358.1 1517957 1518115 R hypothetical protein complement(1517957..1518115) Hyphomonas neptunium ATCC 15444 4288695 YP_760203.1 CDS HNE_1489 NC_008358.1 1518165 1519211 R identified by similarity to GB:AAK22927.1; hypothetical protein complement(1518165..1519211) Hyphomonas neptunium ATCC 15444 4290294 YP_760204.1 CDS HNE_1490 NC_008358.1 1519664 1521649 D identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842; choline/carnitine/betaine transporter 1519664..1521649 Hyphomonas neptunium ATCC 15444 4289564 YP_760205.1 CDS HNE_1491 NC_008358.1 1521965 1522825 D identified by match to protein family HMM PF02678; match to protein family HMM PF05726; pirin family protein 1521965..1522825 Hyphomonas neptunium ATCC 15444 4288201 YP_760206.1 CDS HNE_1492 NC_008358.1 1522946 1524025 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(1522946..1524025) Hyphomonas neptunium ATCC 15444 4289679 YP_760207.1 CDS HNE_1493 NC_008358.1 1524067 1525185 R identified by similarity to SP:P39849; match to protein family HMM PF00107; aryl-alcohol dehydrogenase complement(1524067..1525185) Hyphomonas neptunium ATCC 15444 4287918 YP_760208.1 CDS HNE_1494 NC_008358.1 1525355 1526254 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1525355..1526254 Hyphomonas neptunium ATCC 15444 4288135 YP_760209.1 CDS HNE_1495 NC_008358.1 1527234 1527800 D identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937; ECF sigma factor family protein 1527234..1527800 Hyphomonas neptunium ATCC 15444 4288924 YP_760210.1 CDS HNE_1496 NC_008358.1 1527903 1530389 D identified by match to protein family HMM PF00069; serine/threonine protein kinase 1527903..1530389 Hyphomonas neptunium ATCC 15444 4288825 YP_760211.1 CDS HNE_1497 NC_008358.1 1530514 1530867 D identified by similarity to GB:AAT29983.1; hypothetical protein 1530514..1530867 Hyphomonas neptunium ATCC 15444 4288659 YP_760212.1 CDS HNE_1498 NC_008358.1 1530923 1531399 D putative lipoprotein 1530923..1531399 Hyphomonas neptunium ATCC 15444 4289760 YP_760213.1 CDS HNE_1499 NC_008358.1 1531468 1531932 D putative lipoprotein 1531468..1531932 Hyphomonas neptunium ATCC 15444 4289423 YP_760214.1 CDS HNE_1500 NC_008358.1 1531947 1532510 D putative lipoprotein 1531947..1532510 Hyphomonas neptunium ATCC 15444 4288529 YP_760215.1 CDS HNE_1501 NC_008358.1 1532579 1533145 R putative lipoprotein complement(1532579..1533145) Hyphomonas neptunium ATCC 15444 4287187 YP_760216.1 CDS HNE_1502 NC_008358.1 1533186 1533989 R hypothetical protein complement(1533186..1533989) Hyphomonas neptunium ATCC 15444 4288358 YP_760217.1 CDS HNE_1503 NC_008358.1 1534122 1537250 D identified by match to protein family HMM TIGR01409; Tat pathway signal sequence domain-containing protein 1534122..1537250 Hyphomonas neptunium ATCC 15444 4289384 YP_760218.1 CDS HNE_1505 NC_008358.1 1538187 1538804 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1538187..1538804) Hyphomonas neptunium ATCC 15444 4287500 YP_760219.1 CDS HNE_1506 NC_008358.1 1538885 1539376 D hypothetical protein 1538885..1539376 Hyphomonas neptunium ATCC 15444 4289520 YP_760220.1 CDS HNE_1507 NC_008358.1 1540249 1541190 R identified by similarity to GB:AAL71852.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1540249..1541190) Hyphomonas neptunium ATCC 15444 4287962 YP_760221.1 CDS HNE_1508 NC_008358.1 1541190 1544024 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF01627; match to protein family HMM PF02518; sensor histidine kinase/response regulator complement(1541190..1544024) Hyphomonas neptunium ATCC 15444 4289977 YP_760222.1 CDS HNE_1509 NC_008358.1 1544021 1544410 R hypothetical protein complement(1544021..1544410) Hyphomonas neptunium ATCC 15444 4288966 YP_760223.1 CDS HNE_1510 NC_008358.1 1545079 1546086 D identified by match to protein family HMM PF02277; putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase CobT 1545079..1546086 Hyphomonas neptunium ATCC 15444 4288520 YP_760224.1 CDS HNE_1511 NC_008358.1 1546083 1546841 D identified by match to protein family HMM PF02654; match to protein family HMM TIGR00317; cobalamin 5'-phosphate synthase 1546083..1546841 Hyphomonas neptunium ATCC 15444 4287108 YP_760225.1 CDS HNE_1512 NC_008358.1 1546832 1547350 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1546832..1547350 Hyphomonas neptunium ATCC 15444 4289624 YP_760226.1 CDS cobO NC_008358.1 1547362 1547964 D identified by match to protein family HMM PF02572; match to protein family HMM TIGR00708; cob(I)alamin adenosyltransferase 1547362..1547964 Hyphomonas neptunium ATCC 15444 4287933 YP_760227.1 CDS HNE_1514 NC_008358.1 1548377 1550224 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1548377..1550224 Hyphomonas neptunium ATCC 15444 4288154 YP_760228.1 CDS HNE_1515 NC_008358.1 1550234 1551079 D Part of the evidence for the annotation of this gene is based on presence of the gene in a cluster of genes with related functions.; putative iron ABC transporter periplasmic iron-binding protein 1550234..1551079 Hyphomonas neptunium ATCC 15444 4288526 YP_760229.1 CDS HNE_1516 NC_008358.1 1551076 1552065 D identified by match to protein family HMM PF01032; iron compound ABC transporter permease 1551076..1552065 Hyphomonas neptunium ATCC 15444 4287334 YP_760230.1 CDS HNE_1517 NC_008358.1 1552058 1552819 D identified by similarity to SP:P07821; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1552058..1552819 Hyphomonas neptunium ATCC 15444 4289311 YP_760231.1 CDS cobD NC_008358.1 1553199 1554149 D identified by match to protein family HMM PF03186; match to protein family HMM TIGR00380; cobalamin biosynthesis protein CobD 1553199..1554149 Hyphomonas neptunium ATCC 15444 4287510 YP_760232.1 CDS HNE_1520 NC_008358.1 1554146 1555138 D identified by similarity to SP:P21633; match to protein family HMM PF00155; putative threonine-phosphate decarboxylase CobC 1554146..1555138 Hyphomonas neptunium ATCC 15444 4287549 YP_760233.1 CDS cobU NC_008358.1 1555128 1555634 R identified by match to protein family HMM PF02283; cobinamide kinase / cobinamide phosphate guanyltransferase complement(1555128..1555634) Hyphomonas neptunium ATCC 15444 4289476 YP_760234.1 CDS alkB NC_008358.1 1556123 1556773 R identified by similarity to SP:P05050; match to protein family HMM PF03171; alkylated DNA repair protein AlkB complement(1556123..1556773) Hyphomonas neptunium ATCC 15444 4289592 YP_760235.1 CDS HNE_1523 NC_008358.1 1557069 1557671 R hypothetical protein complement(1557069..1557671) Hyphomonas neptunium ATCC 15444 4290108 YP_760236.1 CDS HNE_1524 NC_008358.1 1557891 1558481 R identified by similarity to PIR:AF2169; hypothetical protein complement(1557891..1558481) Hyphomonas neptunium ATCC 15444 4288043 YP_760237.1 CDS HNE_1525 NC_008358.1 1558670 1559731 D adjacent to truncated response regulator gene; identified by match to protein family HMM PF02518; match to protein family HMM PF07730; sensor histidine kinase 1558670..1559731 Hyphomonas neptunium ATCC 15444 4287067 YP_760238.1 CDS HNE_1527 NC_008358.1 1559901 1560758 D identified by similarity to GB:AAS80487.1; match to protein family HMM PF05982; hypothetical protein 1559901..1560758 Hyphomonas neptunium ATCC 15444 4289301 YP_760239.1 CDS HNE_1528 NC_008358.1 1560761 1561066 D identified by similarity to GB:AAR33835.1; hypothetical protein 1560761..1561066 Hyphomonas neptunium ATCC 15444 4288272 YP_760240.1 CDS HNE_1529 NC_008358.1 1561115 1561384 R identified by similarity to GB:BAD70720.1; hypothetical protein complement(1561115..1561384) Hyphomonas neptunium ATCC 15444 4287955 YP_760241.1 CDS HNE_1530 NC_008358.1 1561387 1561644 R hypothetical protein complement(1561387..1561644) Hyphomonas neptunium ATCC 15444 4289687 YP_760242.1 CDS HNE_1531 NC_008358.1 1562342 1563262 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1562342..1563262 Hyphomonas neptunium ATCC 15444 4287098 YP_760243.1 CDS HNE_1532 NC_008358.1 1563868 1564659 R identified by match to protein family HMM PF02661; Fic family protein complement(1563868..1564659) Hyphomonas neptunium ATCC 15444 4287079 YP_760244.1 CDS HNE_1533 NC_008358.1 1565120 1566127 D identified by match to protein family HMM PF00529; HlyD family secretion protein 1565120..1566127 Hyphomonas neptunium ATCC 15444 4287833 YP_760245.1 CDS HNE_1534 NC_008358.1 1566154 1567881 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1566154..1567881 Hyphomonas neptunium ATCC 15444 4289621 YP_760246.1 CDS HNE_1535 NC_008358.1 1567881 1569017 D identified by match to protein family HMM PF01061; ABC transporter permease 1567881..1569017 Hyphomonas neptunium ATCC 15444 4290365 YP_760247.1 CDS HNE_1536 NC_008358.1 1569019 1570119 D identified by match to protein family HMM PF01061; ABC transporter permease 1569019..1570119 Hyphomonas neptunium ATCC 15444 4289335 YP_760248.1 CDS HNE_1537 NC_008358.1 1570120 1570773 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1570120..1570773 Hyphomonas neptunium ATCC 15444 4287183 YP_760249.1 CDS HNE_1538 NC_008358.1 1570858 1571190 R identified by similarity to GB:CAI09590.1; hypothetical protein complement(1570858..1571190) Hyphomonas neptunium ATCC 15444 4287034 YP_760250.1 CDS HNE_1539 NC_008358.1 1571347 1571835 R identified by match to protein family HMM PF01814; hemerythrin HHE cation binding domain-containing protein complement(1571347..1571835) Hyphomonas neptunium ATCC 15444 4288816 YP_760251.1 CDS HNE_1540 NC_008358.1 1571832 1572257 R identified by match to protein family HMM PF01152; hypothetical protein complement(1571832..1572257) Hyphomonas neptunium ATCC 15444 4287401 YP_760252.1 CDS HNE_1541 NC_008358.1 1572392 1572802 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; putative transcriptional regulator 1572392..1572802 Hyphomonas neptunium ATCC 15444 4287757 YP_760253.1 CDS HNE_1542 NC_008358.1 1572881 1573114 D identified by similarity to GB:AAV97308.1; hypothetical protein 1572881..1573114 Hyphomonas neptunium ATCC 15444 4289497 YP_760254.1 CDS HNE_1543 NC_008358.1 1573133 1573237 D hypothetical protein 1573133..1573237 Hyphomonas neptunium ATCC 15444 4288158 YP_760255.1 CDS HNE_1544 NC_008358.1 1573227 1573349 R hypothetical protein complement(1573227..1573349) Hyphomonas neptunium ATCC 15444 4289988 YP_760256.1 CDS HNE_1545 NC_008358.1 1573333 1573461 R hypothetical protein complement(1573333..1573461) Hyphomonas neptunium ATCC 15444 4289648 YP_760257.1 CDS HNE_1546 NC_008358.1 1573521 1574384 R identified by match to protein family HMM PF01925; hypothetical protein complement(1573521..1574384) Hyphomonas neptunium ATCC 15444 4287907 YP_760258.1 CDS HNE_1547 NC_008358.1 1574445 1575158 D identified by match to protein family HMM PF07298; NnrU family protein 1574445..1575158 Hyphomonas neptunium ATCC 15444 4287288 YP_760259.1 CDS HNE_1548 NC_008358.1 1575196 1575435 D identified by match to protein family HMM PF02597; putative molybdopterin converting factor 1575196..1575435 Hyphomonas neptunium ATCC 15444 4290337 YP_760260.1 CDS HNE_1549 NC_008358.1 1575445 1575918 D hypothetical protein 1575445..1575918 Hyphomonas neptunium ATCC 15444 4288979 YP_760261.1 CDS moaE2 NC_008358.1 1575935 1576432 D identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 1575935..1576432 Hyphomonas neptunium ATCC 15444 4290165 YP_760262.1 CDS moaB2 NC_008358.1 1576419 1576955 D identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B 1576419..1576955 Hyphomonas neptunium ATCC 15444 4289708 YP_760263.1 CDS moaC2 NC_008358.1 1576952 1577440 D identified by match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C 1576952..1577440 Hyphomonas neptunium ATCC 15444 4290126 YP_760264.1 CDS moeA1 NC_008358.1 1577437 1578621 D identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA 1577437..1578621 Hyphomonas neptunium ATCC 15444 4287979 YP_760265.1 CDS HNE_1554 NC_008358.1 1578652 1579029 D identified by match to protein family HMM PF07858; limonene-1,2-epoxide hydrolase 1578652..1579029 Hyphomonas neptunium ATCC 15444 4287085 YP_760266.1 CDS HNE_1555 NC_008358.1 1579171 1581366 D identified by similarity to GB:CAA73377.1; match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM TIGR02504; ribonucleoside-diphosphate reductase 1579171..1581366 Hyphomonas neptunium ATCC 15444 4287134 YP_760267.1 CDS HNE_1556 NC_008358.1 1581388 1582584 D identified by match to protein family HMM PF05940; NnrS family protein 1581388..1582584 Hyphomonas neptunium ATCC 15444 4289860 YP_760268.1 CDS moaA NC_008358.1 1582786 1583778 D together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1582786..1583778 Hyphomonas neptunium ATCC 15444 4288317 YP_760269.1 CDS ftrB NC_008358.1 1583775 1584548 R upregulated by FixLJ/FixK under oxygen limitation; involved in regulation of genes involved in carbon and amino acid metabolism; transcriptional activator FtrB complement(1583775..1584548) Hyphomonas neptunium ATCC 15444 4287586 YP_760270.1 CDS narK NC_008358.1 1584853 1587588 D identified by similarity to SP:P10903; match to protein family HMM PF07690; match to protein family HMM TIGR00886; nitrite extrusion protein 1584853..1587588 Hyphomonas neptunium ATCC 15444 4289468 YP_760271.1 CDS narG NC_008358.1 1587604 1591338 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580; nitrate reductase subunit alpha 1587604..1591338 Hyphomonas neptunium ATCC 15444 4289899 YP_760272.1 CDS narH NC_008358.1 1591335 1592864 D identified by match to protein family HMM PF00037; match to protein family HMM TIGR01660; nitrate reductase subunit beta 1591335..1592864 Hyphomonas neptunium ATCC 15444 4288078 YP_760273.1 CDS narJ NC_008358.1 1592874 1593551 D identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684; nitrate reductase molybdenum cofactor assembly chaperone 1592874..1593551 Hyphomonas neptunium ATCC 15444 4289970 YP_760274.1 CDS HNE_1563 NC_008358.1 1593548 1594750 D identified by similarity to GB:AAK22594.1; hypothetical protein 1593548..1594750 Hyphomonas neptunium ATCC 15444 4288458 YP_760275.1 CDS narI NC_008358.1 1594775 1595545 D identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351; respiratory nitrate reductase subunit gamma 1594775..1595545 Hyphomonas neptunium ATCC 15444 4287297 YP_760276.1 CDS HNE_1565 NC_008358.1 1595542 1596660 D identified by match to protein family HMM PF00639; putative peptidylprolyl cis-trans isomerase 1595542..1596660 Hyphomonas neptunium ATCC 15444 4287458 YP_760277.1 CDS HNE_1566 NC_008358.1 1596692 1597252 D identified by similarity to GB:AAQ58241.1; hypothetical protein 1596692..1597252 Hyphomonas neptunium ATCC 15444 4287576 YP_760278.1 CDS HNE_1567 NC_008358.1 1597249 1597887 D identified by match to protein family HMM PF00484; carbonic anhydrase 1597249..1597887 Hyphomonas neptunium ATCC 15444 4289321 YP_760279.1 CDS HNE_1568 NC_008358.1 1598761 1599873 R identified by similarity to GB:BAC70664.1; hypothetical protein complement(1598761..1599873) Hyphomonas neptunium ATCC 15444 4288183 YP_760280.1 CDS HNE_1569 NC_008358.1 1600152 1600778 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1600152..1600778 Hyphomonas neptunium ATCC 15444 4288701 YP_760281.1 CDS HNE_1570 NC_008358.1 1600819 1602084 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(1600819..1602084) Hyphomonas neptunium ATCC 15444 4288159 YP_760282.1 CDS HNE_1571 NC_008358.1 1602237 1602335 D hypothetical protein 1602237..1602335 Hyphomonas neptunium ATCC 15444 4289349 YP_760283.1 CDS HNE_1572 NC_008358.1 1602374 1603984 R identified by match to protein family HMM PF00732; match to protein family HMM PF05199; GMC oxidoreductase complement(1602374..1603984) Hyphomonas neptunium ATCC 15444 4287195 YP_760284.1 CDS moeA2 NC_008358.1 1605475 1606671 R identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis protein MoeA complement(1605475..1606671) Hyphomonas neptunium ATCC 15444 4288609 YP_760285.1 CDS otsA NC_008358.1 1607217 1608584 D identified by similarity to SP:P31677; match to protein family HMM PF00982; UDP-forming alpha,alpha-trehalose-phosphate synthase 1607217..1608584 Hyphomonas neptunium ATCC 15444 4288267 YP_760286.1 CDS otsB NC_008358.1 1608637 1609338 D identified by similarity to SP:P31678; match to protein family HMM PF02358; match to protein family HMM TIGR00685; match to protein family HMM TIGR01484; trehalose-phosphatase 1608637..1609338 Hyphomonas neptunium ATCC 15444 4288167 YP_760287.1 CDS HNE_1577 NC_008358.1 1609335 1611104 D identified by match to protein family HMM PF00723; glycosyl hydrolase family protein 1609335..1611104 Hyphomonas neptunium ATCC 15444 4289109 YP_760288.1 CDS HNE_1578 NC_008358.1 1611133 1612254 R identified by similarity to GB:AAK23151.1; hypothetical protein complement(1611133..1612254) Hyphomonas neptunium ATCC 15444 4288561 YP_760289.1 CDS HNE_1579 NC_008358.1 1612283 1613005 R identified by match to protein family HMM PF00483; nucleotidyltransferase family protein complement(1612283..1613005) Hyphomonas neptunium ATCC 15444 4290073 YP_760290.1 CDS HNE_1580 NC_008358.1 1613002 1613682 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD family hydrolase complement(1613002..1613682) Hyphomonas neptunium ATCC 15444 4288443 YP_760291.1 CDS HNE_1581 NC_008358.1 1613688 1614896 R putative phosphatidyltransferase complement(1613688..1614896) Hyphomonas neptunium ATCC 15444 4288194 YP_760292.1 CDS HNE_1582 NC_008358.1 1614895 1615335 D identified by similarity to GB:AAK23141.1; hypothetical protein 1614895..1615335 Hyphomonas neptunium ATCC 15444 4287262 YP_760293.1 CDS HNE_1583 NC_008358.1 1615358 1616116 R identified by similarity to GB:AAV88731.1; hypothetical protein complement(1615358..1616116) Hyphomonas neptunium ATCC 15444 4287609 YP_760294.1 CDS HNE_1584 NC_008358.1 1616152 1617306 R identified by similarity to GB:AAK23138.1; hypothetical protein complement(1616152..1617306) Hyphomonas neptunium ATCC 15444 4289189 YP_760295.1 CDS HNE_1585 NC_008358.1 1617333 1617818 R identified by similarity to GB:AAM72564.1; hypothetical protein complement(1617333..1617818) Hyphomonas neptunium ATCC 15444 4290244 YP_760296.1 CDS HNE_1586 NC_008358.1 1617965 1619140 D identified by match to protein family HMM PF03739; putative permease 1617965..1619140 Hyphomonas neptunium ATCC 15444 4287040 YP_760297.1 CDS HNE_1587 NC_008358.1 1619137 1620192 D identified by match to protein family HMM PF03739; putative permease 1619137..1620192 Hyphomonas neptunium ATCC 15444 4287600 YP_760298.1 CDS HNE_1588 NC_008358.1 1620189 1621151 D identified by similarity to GB:CAD84715.1; hypothetical protein 1620189..1621151 Hyphomonas neptunium ATCC 15444 4289093 YP_760299.1 CDS HNE_1589 NC_008358.1 1621148 1622074 D identified by similarity to GB:CAD84716.1; hypothetical protein 1621148..1622074 Hyphomonas neptunium ATCC 15444 4290369 YP_760300.1 CDS HNE_1590 NC_008358.1 1622095 1623288 R identified by similarity to GB:BAB56013.1; match to protein family HMM PF00155; match to protein family HMM PF00202; match to protein family HMM PF00464; match to protein family HMM PF01053; match to protein family HMM PF01212; putative serine C-palmitoyltransferase complement(1622095..1623288) Hyphomonas neptunium ATCC 15444 4289343 YP_760301.1 CDS acpP1 NC_008358.1 1623278 1623535 R identified by similarity to SP:P20804; acyl carrier protein complement(1623278..1623535) Hyphomonas neptunium ATCC 15444 4287689 YP_760302.1 CDS HNE_1592 NC_008358.1 1623501 1624493 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; putative UDP-glucose 4-epimerase complement(1623501..1624493) Hyphomonas neptunium ATCC 15444 4287883 YP_760303.1 CDS HNE_1593 NC_008358.1 1624512 1626287 R identified by match to protein family HMM PF00501; putative AMP binding protein complement(1624512..1626287) Hyphomonas neptunium ATCC 15444 4287127 YP_760304.1 CDS HNE_1594 NC_008358.1 1626486 1627790 R identified by match to protein family HMM PF01943; polysaccharide biosynthesis family protein complement(1626486..1627790) Hyphomonas neptunium ATCC 15444 4289719 YP_760305.1 CDS HNE_1596 NC_008358.1 1628222 1629451 D identified by match to protein family HMM PF00589; phage integrase family site specific recombinase 1628222..1629451 Hyphomonas neptunium ATCC 15444 4290173 YP_760306.1 CDS HNE_1597 NC_008358.1 1629582 1629812 R identified by match to protein family HMM PF01381; DNA-binding protein complement(1629582..1629812) Hyphomonas neptunium ATCC 15444 4288174 YP_760307.1 CDS HNE_1598 NC_008358.1 1629960 1630376 D hypothetical protein 1629960..1630376 Hyphomonas neptunium ATCC 15444 4287069 YP_760308.1 CDS HNE_1599 NC_008358.1 1630706 1632163 R hypothetical protein complement(1630706..1632163) Hyphomonas neptunium ATCC 15444 4290269 YP_760309.1 CDS HNE_1600 NC_008358.1 1632909 1634987 D hypothetical protein 1632909..1634987 Hyphomonas neptunium ATCC 15444 4289587 YP_760310.1 CDS HNE_1602 NC_008358.1 1636129 1637556 D identified by similarity to SP:P13398; match to protein family HMM PF01425; putative 6-aminohexanoate-cyclic-dimer hydrolase 1636129..1637556 Hyphomonas neptunium ATCC 15444 4290423 YP_760311.1 CDS HNE_1603 NC_008358.1 1637611 1638546 R identified by similarity to GB:CAC37457.1; putative oxidoreductase complement(1637611..1638546) Hyphomonas neptunium ATCC 15444 4288399 YP_760312.1 CDS HNE_1604 NC_008358.1 1638546 1639526 R identified by similarity to GB:AAA23300.1; match to protein family HMM PF03435; hypothetical protein complement(1638546..1639526) Hyphomonas neptunium ATCC 15444 4290041 YP_760313.1 CDS HNE_1605 NC_008358.1 1639523 1640170 R identified by match to protein family HMM PF00583; acetyltransferase complement(1639523..1640170) Hyphomonas neptunium ATCC 15444 4287094 YP_760314.1 CDS HNE_1606 NC_008358.1 1640251 1640826 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1640251..1640826 Hyphomonas neptunium ATCC 15444 4288674 YP_760315.1 CDS HNE_1607 NC_008358.1 1640976 1641656 R identified by similarity to GB:AAS20349.1; hypothetical protein complement(1640976..1641656) Hyphomonas neptunium ATCC 15444 4289755 YP_760316.1 CDS HNE_1608 NC_008358.1 1641813 1643819 R identified by match to protein family HMM PF00144; beta-lactamase complement(1641813..1643819) Hyphomonas neptunium ATCC 15444 4288053 YP_760317.1 CDS HNE_1609 NC_008358.1 1643816 1644952 R identified by match to protein family HMM PF05684; hypothetical protein complement(1643816..1644952) Hyphomonas neptunium ATCC 15444 4287135 YP_760318.1 CDS HNE_1610 NC_008358.1 1644949 1646019 R identified by match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein complement(1644949..1646019) Hyphomonas neptunium ATCC 15444 4287663 YP_760319.1 CDS HNE_1611 NC_008358.1 1646125 1648494 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(1646125..1648494) Hyphomonas neptunium ATCC 15444 4288268 YP_760320.1 CDS HNE_1612 NC_008358.1 1648558 1648662 R hypothetical protein complement(1648558..1648662) Hyphomonas neptunium ATCC 15444 4290002 YP_760321.1 CDS HNE_1613 NC_008358.1 1648706 1649191 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(1648706..1649191) Hyphomonas neptunium ATCC 15444 4287249 YP_760322.1 CDS HNE_1614 NC_008358.1 1649197 1649616 D hypothetical protein 1649197..1649616 Hyphomonas neptunium ATCC 15444 4288807 YP_760323.1 CDS ldh1 NC_008358.1 1649609 1650697 D identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812; leucine dehydrogenase 1649609..1650697 Hyphomonas neptunium ATCC 15444 4289194 YP_760324.1 CDS HNE_1616 NC_008358.1 1650787 1651632 R identified by match to protein family HMM PF01925; hypothetical protein complement(1650787..1651632) Hyphomonas neptunium ATCC 15444 4290318 YP_760325.1 CDS HNE_1617 NC_008358.1 1651776 1654415 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(1651776..1654415) Hyphomonas neptunium ATCC 15444 4286999 YP_760326.1 CDS HNE_1618 NC_008358.1 1654802 1655362 R identified by similarity to PIR:S70540; match to protein family HMM PF03861; ANTAR domain-containing protein complement(1654802..1655362) Hyphomonas neptunium ATCC 15444 4288711 YP_760327.1 CDS HNE_1619 NC_008358.1 1655524 1655661 D hypothetical protein 1655524..1655661 Hyphomonas neptunium ATCC 15444 4287700 YP_760328.1 CDS HNE_1620 NC_008358.1 1655756 1657552 R identified by similarity to PIR:F82984; hypothetical protein complement(1655756..1657552) Hyphomonas neptunium ATCC 15444 4287884 YP_760329.1 CDS HNE_1621 NC_008358.1 1657866 1658834 D identified by match to protein family HMM PF00478; match to protein family HMM PF03060; 2-nitropropane dioxygenase 1657866..1658834 Hyphomonas neptunium ATCC 15444 4287669 YP_760330.1 CDS HNE_1622 NC_008358.1 1658917 1660458 R identified by match to protein family HMM PF02534; TraG/TraD family protein complement(1658917..1660458) Hyphomonas neptunium ATCC 15444 4287799 YP_760331.1 CDS HNE_1623 NC_008358.1 1660473 1661210 R identified by similarity to GB:CAD84149.1; hypothetical protein complement(1660473..1661210) Hyphomonas neptunium ATCC 15444 4288612 YP_760332.1 CDS sodA NC_008358.1 1661301 1662038 R identified by similarity to SP:P54375; match to protein family HMM PF00081; match to protein family HMM PF02777; superoxide dismutase complement(1661301..1662038) Hyphomonas neptunium ATCC 15444 4289767 YP_760333.1 CDS HNE_1625 NC_008358.1 1662192 1662866 R identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase complement(1662192..1662866) Hyphomonas neptunium ATCC 15444 4289357 YP_760334.1 CDS HNE_1626 NC_008358.1 1662962 1663810 D putative lipoprotein 1662962..1663810 Hyphomonas neptunium ATCC 15444 4287147 YP_760335.1 CDS HNE_1627 NC_008358.1 1663866 1664147 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(1663866..1664147) Hyphomonas neptunium ATCC 15444 4289052 YP_760336.1 CDS HNE_1628 NC_008358.1 1664278 1664847 R identified by similarity to GB:AAK24341.1; match to protein family HMM PF01169; hypothetical protein complement(1664278..1664847) Hyphomonas neptunium ATCC 15444 4289918 YP_760337.1 CDS HNE_1629 NC_008358.1 1665211 1665930 D putative lipoprotein 1665211..1665930 Hyphomonas neptunium ATCC 15444 4289600 YP_760338.1 CDS HNE_1630 NC_008358.1 1666036 1666464 D identified by similarity to GB:AAK22457.1; hypothetical protein 1666036..1666464 Hyphomonas neptunium ATCC 15444 4288818 YP_760339.1 CDS HNE_1631 NC_008358.1 1666472 1668850 R identified by match to protein family HMM PF00069; protein kinase complement(1666472..1668850) Hyphomonas neptunium ATCC 15444 4287567 YP_760340.1 CDS HNE_1632 NC_008358.1 1668816 1669400 R identified by match to protein family HMM PF04542; match to protein family HMM PF07638; match to protein family HMM TIGR02937; ECF sigma factor family protein complement(1668816..1669400) Hyphomonas neptunium ATCC 15444 4287217 YP_760341.1 CDS HNE_1633 NC_008358.1 1669548 1670111 D hypothetical protein 1669548..1670111 Hyphomonas neptunium ATCC 15444 4287679 YP_760342.1 CDS HNE_1634 NC_008358.1 1670115 1671776 D hypothetical protein 1670115..1671776 Hyphomonas neptunium ATCC 15444 4289009 YP_760343.1 CDS HNE_1635 NC_008358.1 1671783 1672937 D hypothetical protein 1671783..1672937 Hyphomonas neptunium ATCC 15444 4288252 YP_760344.1 CDS HNE_1636 NC_008358.1 1673109 1674425 D identified by match to protein family HMM PF00069; protein kinase 1673109..1674425 Hyphomonas neptunium ATCC 15444 4287607 YP_760345.1 CDS HNE_1637 NC_008358.1 1674477 1675424 D identified by match to protein family HMM PF00112; cysteine protease 1674477..1675424 Hyphomonas neptunium ATCC 15444 4287864 YP_760346.1 CDS HNE_1638 NC_008358.1 1675467 1675997 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1675467..1675997) Hyphomonas neptunium ATCC 15444 4288632 YP_760347.1 CDS ectA NC_008358.1 1676180 1676749 D identified by match to protein family HMM PF00583; match to protein family HMM TIGR02406; L-2,4-diaminobutyric acid acetyltransferase 1676180..1676749 Hyphomonas neptunium ATCC 15444 4288070 YP_760348.1 CDS ectB NC_008358.1 1676795 1678090 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1676795..1678090 Hyphomonas neptunium ATCC 15444 4290226 YP_760349.1 CDS ectC NC_008358.1 1678102 1678509 D N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 1678102..1678509 Hyphomonas neptunium ATCC 15444 4288123 YP_760350.1 CDS HNE_1642 NC_008358.1 1678526 1679467 D identified by similarity to GB:AAS02097.1; match to protein family HMM PF05721; match to protein family HMM TIGR02408; ectoine hydroxylase 1678526..1679467 Hyphomonas neptunium ATCC 15444 4288110 YP_760351.1 CDS HNE_1643 NC_008358.1 1679469 1680917 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 1679469..1680917 Hyphomonas neptunium ATCC 15444 4288998 YP_760352.1 CDS HNE_1644 NC_008358.1 1680923 1682266 D identified by match to protein family HMM PF07690; major facilitator family transporter 1680923..1682266 Hyphomonas neptunium ATCC 15444 4287233 YP_760353.1 CDS HNE_1645 NC_008358.1 1682263 1683714 D identified by match to protein family HMM PF00474; solute/sodium symporter (SSS) family protein 1682263..1683714 Hyphomonas neptunium ATCC 15444 4288420 YP_760354.1 CDS HNE_1646 NC_008358.1 1684011 1685354 D identified by similarity to SP:P75830; match to protein family HMM PF00364; match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1684011..1685354 Hyphomonas neptunium ATCC 15444 4290124 YP_760355.1 CDS HNE_1647 NC_008358.1 1685368 1687305 D identified by similarity to SP:P75831; match to protein family HMM PF00005; match to protein family HMM PF02687; putative macrolide efflux ABC transporter permease/ATP-binding protein 1685368..1687305 Hyphomonas neptunium ATCC 15444 4288733 YP_760356.1 CDS HNE_1648 NC_008358.1 1687311 1688663 D identified by similarity to SP:Q51487; match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 1687311..1688663 Hyphomonas neptunium ATCC 15444 4289368 YP_760357.1 CDS HNE_1649 NC_008358.1 1688854 1689540 D identified by match to protein family HMM PF03929; hypothetical protein 1688854..1689540 Hyphomonas neptunium ATCC 15444 4289738 YP_760358.1 CDS HNE_1650 NC_008358.1 1689551 1690066 D identified by similarity to GB:AAM37790.1; hypothetical protein 1689551..1690066 Hyphomonas neptunium ATCC 15444 4288505 YP_760359.1 CDS HNE_1651 NC_008358.1 1690103 1690918 D identified by similarity to GB:AAM37791.1; hypothetical protein 1690103..1690918 Hyphomonas neptunium ATCC 15444 4289098 YP_760360.1 CDS HNE_1652 NC_008358.1 1690915 1691889 D identified by match to protein family HMM PF02424; ApbE family protein 1690915..1691889 Hyphomonas neptunium ATCC 15444 4287752 YP_760361.1 CDS HNE_1653 NC_008358.1 1692075 1694474 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1692075..1694474 Hyphomonas neptunium ATCC 15444 4288926 YP_760362.1 CDS dld NC_008358.1 1694636 1696297 D component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 1694636..1696297 Hyphomonas neptunium ATCC 15444 4288050 YP_760363.1 CDS HNE_1655 NC_008358.1 1696304 1697125 R identified by similarity to SP:P06957; match to protein family HMM PF07729; putative transcriptional regulator complement(1696304..1697125) Hyphomonas neptunium ATCC 15444 4290539 YP_760364.1 CDS HNE_1656 NC_008358.1 1697350 1698039 R hypothetical protein complement(1697350..1698039) Hyphomonas neptunium ATCC 15444 4289920 YP_760365.1 CDS HNE_1657 NC_008358.1 1698153 1698275 R identified by match to protein family HMM TIGR02106; cyd operon protein YbgT complement(1698153..1698275) Hyphomonas neptunium ATCC 15444 4289344 YP_760366.1 CDS cydB NC_008358.1 1698289 1699431 R identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase subunit II complement(1698289..1699431) Hyphomonas neptunium ATCC 15444 4290295 YP_760367.1 CDS cydA NC_008358.1 1699444 1701024 R identified by similarity to SP:P11026; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase subunit I complement(1699444..1701024) Hyphomonas neptunium ATCC 15444 4289667 YP_760368.1 CDS HNE_1660 NC_008358.1 1701155 1702834 D identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM TIGR02857; amino acid ABC transporter permease/ATP-binding protein CydD 1701155..1702834 Hyphomonas neptunium ATCC 15444 4288875 YP_760369.1 CDS HNE_1661 NC_008358.1 1702834 1704474 D identified by similarity to SP:P23886; match to protein family HMM PF00005; putative amino acid ABC transporter ATP-binding protein CydC 1702834..1704474 Hyphomonas neptunium ATCC 15444 4290425 YP_760370.1 CDS HNE_1662 NC_008358.1 1704471 1705427 R hypothetical protein complement(1704471..1705427) Hyphomonas neptunium ATCC 15444 4289345 YP_760371.1 CDS HNE_1663 NC_008358.1 1706392 1706979 D identified by similarity to SP:Q51948; match to protein family HMM PF01323; putative 2-hydroxychromene-2-carboxylate isomerase 1706392..1706979 Hyphomonas neptunium ATCC 15444 4288970 YP_760372.1 CDS HNE_1664 NC_008358.1 1707008 1707457 D identified by similarity to GB:CAE26026.1; hypothetical protein 1707008..1707457 Hyphomonas neptunium ATCC 15444 4287569 YP_760373.1 CDS HNE_1665 NC_008358.1 1707522 1708139 D identified by similarity to GB:AAK23161.1; hypothetical protein 1707522..1708139 Hyphomonas neptunium ATCC 15444 4287593 YP_760374.1 CDS HNE_1666 NC_008358.1 1708256 1709026 D identified by similarity to GB:AAN68957.1; match to protein family HMM PF03781; hypothetical protein 1708256..1709026 Hyphomonas neptunium ATCC 15444 4289326 YP_760375.1 CDS HNE_1667 NC_008358.1 1709033 1710559 R identified by match to protein family HMM PF00884; sulfatase family protein complement(1709033..1710559) Hyphomonas neptunium ATCC 15444 4287687 YP_760376.1 CDS HNE_1668 NC_008358.1 1710684 1712465 R identified by match to protein family HMM PF00884; sulfatase family protein complement(1710684..1712465) Hyphomonas neptunium ATCC 15444 4288672 YP_760377.1 CDS HNE_1669 NC_008358.1 1712611 1713612 D identified by similarity to GB:AAK25606.1; hypothetical protein 1712611..1713612 Hyphomonas neptunium ATCC 15444 4288204 YP_760378.1 CDS HNE_1670 NC_008358.1 1713609 1715207 D identified by similarity to SP:Q9HHC4; match to protein family HMM PF01068; match to protein family HMM PF04679; putative DNA ligase, ATP-dependent 1713609..1715207 Hyphomonas neptunium ATCC 15444 4289140 YP_760379.1 CDS HNE_1671 NC_008358.1 1715301 1717253 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 1715301..1717253 Hyphomonas neptunium ATCC 15444 4287539 YP_760380.1 CDS HNE_1672 NC_008358.1 1717309 1717689 R hypothetical protein complement(1717309..1717689) Hyphomonas neptunium ATCC 15444 4287655 YP_760381.1 CDS HNE_1673 NC_008358.1 1717774 1718739 R identified by similarity to GB:AAO77005.1; hypothetical protein complement(1717774..1718739) Hyphomonas neptunium ATCC 15444 4287084 YP_760382.1 CDS HNE_1674 NC_008358.1 1718881 1719414 R identified by match to protein family HMM PF00583; acetyltransferase complement(1718881..1719414) Hyphomonas neptunium ATCC 15444 4290119 YP_760383.1 CDS HNE_1675 NC_008358.1 1719404 1720306 R identified by match to protein family HMM PF01112; putative asparaginase complement(1719404..1720306) Hyphomonas neptunium ATCC 15444 4287546 YP_760384.1 CDS valS NC_008358.1 1720427 1723147 R identified by match to protein family HMM PF00133; match to protein family HMM TIGR00422; valyl-tRNA synthetase complement(1720427..1723147) Hyphomonas neptunium ATCC 15444 4288937 YP_760385.1 CDS HNE_1677 NC_008358.1 1723237 1723896 R identified by similarity to GB:AAK23300.1; hypothetical protein complement(1723237..1723896) Hyphomonas neptunium ATCC 15444 4287311 YP_760386.1 CDS HNE_1678 NC_008358.1 1723997 1725277 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein complement(1723997..1725277) Hyphomonas neptunium ATCC 15444 4287476 YP_760387.1 CDS HNE_1679 NC_008358.1 1725372 1726028 R identified by match to protein family HMM PF01135; putative protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1725372..1726028) Hyphomonas neptunium ATCC 15444 4289338 YP_760388.1 CDS HNE_1681 NC_008358.1 1726389 1726565 D hypothetical protein 1726389..1726565 Hyphomonas neptunium ATCC 15444 4288914 YP_760389.1 CDS HNE_1683 NC_008358.1 1726709 1727281 R identified by match to protein family HMM PF00583; acetyltransferase complement(1726709..1727281) Hyphomonas neptunium ATCC 15444 4288368 YP_760390.1 CDS HNE_1684 NC_008358.1 1727505 1728293 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase complement(1727505..1728293) Hyphomonas neptunium ATCC 15444 4289002 YP_760391.1 CDS HNE_1685 NC_008358.1 1728290 1728625 R identified by similarity to GB:BAB50753.1; hypothetical protein complement(1728290..1728625) Hyphomonas neptunium ATCC 15444 4288514 YP_760392.1 CDS HNE_1686 NC_008358.1 1728726 1729097 D identified by match to protein family HMM PF01638; putative transcriptional regulator 1728726..1729097 Hyphomonas neptunium ATCC 15444 4288962 YP_760393.1 CDS HNE_1687 NC_008358.1 1729596 1729901 D identified by similarity to GB:AAN82617.1; hypothetical protein 1729596..1729901 Hyphomonas neptunium ATCC 15444 4287588 YP_760394.1 CDS merR NC_008358.1 1730095 1730487 R identified by similarity to SP:P13111; match to protein family HMM PF00376; mercuric resistance operon regulatory protein complement(1730095..1730487) Hyphomonas neptunium ATCC 15444 4289658 YP_760395.1 CDS merT NC_008358.1 1730591 1730965 D identified by similarity to SP:P13112; mercuric transport protein MerT 1730591..1730965 Hyphomonas neptunium ATCC 15444 4289477 YP_760396.1 CDS merP NC_008358.1 1731026 1731301 D identified by match to protein family HMM PF00403; mercuric transport protein, periplasmic component 1731026..1731301 Hyphomonas neptunium ATCC 15444 4287515 YP_760397.1 CDS merA NC_008358.1 1731485 1732909 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercuric reductase 1731485..1732909 Hyphomonas neptunium ATCC 15444 4290192 YP_760398.1 CDS HNE_1692 NC_008358.1 1733036 1733494 R identified by similarity to GB:AAO07774.1; hypothetical protein complement(1733036..1733494) Hyphomonas neptunium ATCC 15444 4288694 YP_760399.1 CDS HNE_1693 NC_008358.1 1733491 1736700 R identified by similarity to SP:P38054; match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein complement(1733491..1736700) Hyphomonas neptunium ATCC 15444 4288177 YP_760400.1 CDS HNE_1694 NC_008358.1 1736697 1738505 R identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1736697..1738505) Hyphomonas neptunium ATCC 15444 4286998 YP_760401.1 CDS HNE_1695 NC_008358.1 1738502 1739719 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1738502..1739719) Hyphomonas neptunium ATCC 15444 4287394 YP_760402.1 CDS HNE_1696 NC_008358.1 1739783 1740067 R identified by similarity to GB:CAB89594.2; hypothetical protein complement(1739783..1740067) Hyphomonas neptunium ATCC 15444 4289639 YP_760403.1 CDS HNE_1697 NC_008358.1 1740074 1740217 D hypothetical protein 1740074..1740217 Hyphomonas neptunium ATCC 15444 4289825 YP_760404.1 CDS HNE_1698 NC_008358.1 1740863 1741699 D identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; sigma-70 region 2 1740863..1741699 Hyphomonas neptunium ATCC 15444 4289697 YP_760405.1 CDS HNE_1699 NC_008358.1 1741696 1742331 D hypothetical protein 1741696..1742331 Hyphomonas neptunium ATCC 15444 4290388 YP_760406.1 CDS HNE_1700 NC_008358.1 1742747 1745137 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM PF04945; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1742747..1745137) Hyphomonas neptunium ATCC 15444 4290315 YP_760407.1 CDS HNE_1701 NC_008358.1 1745237 1746091 R hypothetical protein complement(1745237..1746091) Hyphomonas neptunium ATCC 15444 4289685 YP_760408.1 CDS HNE_1702 NC_008358.1 1746176 1746913 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(1746176..1746913) Hyphomonas neptunium ATCC 15444 4287468 YP_760409.1 CDS HNE_1703 NC_008358.1 1746913 1747392 R identified by similarity to GB:AAV82071.1; hypothetical protein complement(1746913..1747392) Hyphomonas neptunium ATCC 15444 4290438 YP_760410.1 CDS copD NC_008358.1 1747403 1748233 R identified by match to protein family HMM PF05425; copper resistance protein D complement(1747403..1748233) Hyphomonas neptunium ATCC 15444 4288005 YP_760411.1 CDS copC NC_008358.1 1748245 1748598 R identified by similarity to SP:Q56797; match to protein family HMM PF04234; copper resistance protein CopC complement(1748245..1748598) Hyphomonas neptunium ATCC 15444 4287886 YP_760412.1 CDS HNE_1706 NC_008358.1 1748640 1749422 R identified by match to protein family HMM PF05275; copper resistance protein B complement(1748640..1749422) Hyphomonas neptunium ATCC 15444 4290135 YP_760413.1 CDS HNE_1707 NC_008358.1 1749437 1751290 R identified by similarity to SP:P12374; match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409; match to protein family HMM TIGR01480; CopA family copper resistance protein complement(1749437..1751290) Hyphomonas neptunium ATCC 15444 4288303 YP_760414.1 CDS HNE_1708 NC_008358.1 1751359 1751937 R identified by similarity to SP:P77214; putative copper resistance protein complement(1751359..1751937) Hyphomonas neptunium ATCC 15444 4288425 YP_760415.1 CDS HNE_1709 NC_008358.1 1752531 1752806 D identified by similarity to GB:BAC45966.1; match to protein family HMM PF02583; hypothetical protein 1752531..1752806 Hyphomonas neptunium ATCC 15444 4289146 YP_760416.1 CDS HNE_1710 NC_008358.1 1752845 1753030 R identified by similarity to GB:CAE80563.1; hypothetical protein complement(1752845..1753030) Hyphomonas neptunium ATCC 15444 4288477 YP_760417.1 CDS HNE_1711 NC_008358.1 1753123 1753317 D hypothetical protein 1753123..1753317 Hyphomonas neptunium ATCC 15444 4289886 YP_760418.1 CDS HNE_1712 NC_008358.1 1753481 1753588 R hypothetical protein complement(1753481..1753588) Hyphomonas neptunium ATCC 15444 4287230 YP_760419.1 CDS cadA NC_008358.1 1753588 1755579 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525; cadmium-translocating P-type ATPase complement(1753588..1755579) Hyphomonas neptunium ATCC 15444 4289917 YP_760420.1 CDS HNE_1714 NC_008358.1 1755655 1758768 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein complement(1755655..1758768) Hyphomonas neptunium ATCC 15444 4288849 YP_760421.1 CDS HNE_1715 NC_008358.1 1758795 1760099 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1758795..1760099) Hyphomonas neptunium ATCC 15444 4290023 YP_760422.1 CDS HNE_1716 NC_008358.1 1760096 1761391 R identified by match to protein family HMM PF02321; efflux transporter, outer membrane factor complement(1760096..1761391) Hyphomonas neptunium ATCC 15444 4289884 YP_760423.1 CDS HNE_1717 NC_008358.1 1761469 1761993 R hypothetical protein complement(1761469..1761993) Hyphomonas neptunium ATCC 15444 4287119 YP_760424.1 CDS HNE_1718 NC_008358.1 1762406 1762591 R identified by match to protein family HMM PF05930; prophage CP4-57 regulatory protein AlpA family protein complement(1762406..1762591) Hyphomonas neptunium ATCC 15444 4288304 YP_760425.1 CDS HNE_1719 NC_008358.1 1762696 1763001 R identified by similarity to PIR:AD3172; match to protein family HMM PF05284; hypothetical protein complement(1762696..1763001) Hyphomonas neptunium ATCC 15444 4289316 YP_760426.1 CDS HNE_1720 NC_008358.1 1763238 1764482 R identified by similarity to PIR:A46449; match to protein family HMM PF03743; type IV secretion system protein TrbI family protein complement(1763238..1764482) Hyphomonas neptunium ATCC 15444 4287525 YP_760427.1 CDS HNE_1721 NC_008358.1 1764487 1765446 R identified by similarity to PIR:H44020; match to protein family HMM PF03524; match to protein family HMM TIGR02775; type IV secretion system protein TrbG family protein complement(1764487..1765446) Hyphomonas neptunium ATCC 15444 4288432 YP_760428.1 CDS HNE_1722 NC_008358.1 1765486 1766685 D identified by similarity to SP:P49814; malate dehydrogenase domain-containing protein 1765486..1766685 Hyphomonas neptunium ATCC 15444 4288558 YP_760429.1 CDS HNE_1723 NC_008358.1 1766682 1767047 D identified by similarity to GB:BAD01773.1; hypothetical protein 1766682..1767047 Hyphomonas neptunium ATCC 15444 4290029 YP_760430.1 CDS HNE_1724 NC_008358.1 1767050 1767850 D hypothetical protein 1767050..1767850 Hyphomonas neptunium ATCC 15444 4288519 YP_760431.1 CDS HNE_1725 NC_008358.1 1768669 1769844 D identified by match to protein family HMM PF00271; putative helicase 1768669..1769844 Hyphomonas neptunium ATCC 15444 4287173 YP_760432.1 CDS HNE_1726 NC_008358.1 1769754 1770410 R identified by similarity to SP:P13111; match to protein family HMM PF00376; MerR family transcriptional regulator complement(1769754..1770410) Hyphomonas neptunium ATCC 15444 4288011 YP_760433.1 CDS HNE_1727 NC_008358.1 1770472 1771098 D identified by match to protein family HMM PF01545; cation efflux family protein 1770472..1771098 Hyphomonas neptunium ATCC 15444 4287794 YP_760434.1 CDS lspA2 NC_008358.1 1771095 1771559 D identified by match to protein family HMM PF01252; match to protein family HMM TIGR00077; signal peptidase II 1771095..1771559 Hyphomonas neptunium ATCC 15444 4289571 YP_760435.1 CDS HNE_1729 NC_008358.1 1771923 1773140 R identified by match to protein family HMM PF00589; phage integrase family site specific recombinase complement(1771923..1773140) Hyphomonas neptunium ATCC 15444 4287059 YP_760436.1 CDS HNE_1731 NC_008358.1 1773446 1773667 R identified by similarity to SP:Q89UZ9; match to protein family HMM PF03884; hypothetical protein complement(1773446..1773667) Hyphomonas neptunium ATCC 15444 4290253 YP_760437.1 CDS HNE_1732 NC_008358.1 1773664 1774734 R hypothetical protein complement(1773664..1774734) Hyphomonas neptunium ATCC 15444 4288145 YP_760438.1 CDS pgi NC_008358.1 1774739 1776289 R identified by match to protein family HMM PF00342; glucose-6-phosphate isomerase complement(1774739..1776289) Hyphomonas neptunium ATCC 15444 4290301 YP_760439.1 CDS tuf1 NC_008358.1 1776506 1777696 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1776506..1777696 Hyphomonas neptunium ATCC 15444 4289960 YP_760440.1 CDS HNE_1735 NC_008358.1 1777764 1778312 R identified by similarity to GB:BAC49198.1; match to protein family HMM PF02627; carboxymuconolactone decarboxylase domain-containing protein complement(1777764..1778312) Hyphomonas neptunium ATCC 15444 4288986 YP_760441.1 CDS HNE_1737 NC_008358.1 1778583 1780199 D identified by match to protein family HMM PF00128; glycosyl hydrolase family protein 1778583..1780199 Hyphomonas neptunium ATCC 15444 4287449 YP_760442.1 CDS zwf NC_008358.1 1780289 1781758 D identified by similarity to SP:P22992; match to protein family HMM PF00479; match to protein family HMM PF02781; match to protein family HMM TIGR00871; glucose-6-phosphate 1-dehydrogenase 1780289..1781758 Hyphomonas neptunium ATCC 15444 4290277 YP_760443.1 CDS pgl NC_008358.1 1781763 1782473 D identified by match to protein family HMM TIGR01198; 6-phosphogluconolactonase 1781763..1782473 Hyphomonas neptunium ATCC 15444 4288381 YP_760444.1 CDS edd NC_008358.1 1782476 1784308 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1782476..1784308 Hyphomonas neptunium ATCC 15444 4289032 YP_760445.1 CDS glk NC_008358.1 1784312 1785280 D identified by similarity to SP:P46880; match to protein family HMM PF02685; glucokinase 1784312..1785280 Hyphomonas neptunium ATCC 15444 4289377 YP_760446.1 CDS nuoA NC_008358.1 1785466 1785840 D identified by similarity to SP:O84969; match to protein family HMM PF00507; NADH-quinone oxidoreductase subunit A 1785466..1785840 Hyphomonas neptunium ATCC 15444 4287661 YP_760447.1 CDS nuoB NC_008358.1 1785840 1786412 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1785840..1786412 Hyphomonas neptunium ATCC 15444 4289104 YP_760448.1 CDS nuoC NC_008358.1 1786424 1787032 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1786424..1787032 Hyphomonas neptunium ATCC 15444 4288025 YP_760449.1 CDS nuoD NC_008358.1 1787064 1788242 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1787064..1788242 Hyphomonas neptunium ATCC 15444 4287922 YP_760450.1 CDS HNE_1746 NC_008358.1 1788239 1788586 D identified by similarity to GB:AAK23926.1; hypothetical protein 1788239..1788586 Hyphomonas neptunium ATCC 15444 4288113 YP_760451.1 CDS HNE_1747 NC_008358.1 1788586 1789038 D identified by match to protein family HMM PF00903; glyoxalase family protein 1788586..1789038 Hyphomonas neptunium ATCC 15444 4290432 YP_760452.1 CDS nuoE NC_008358.1 1789039 1789812 D identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958; NADH-quinone oxidoreductase subunit E 1789039..1789812 Hyphomonas neptunium ATCC 15444 4289358 YP_760453.1 CDS nuoF NC_008358.1 1789816 1791123 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1789816..1791123 Hyphomonas neptunium ATCC 15444 4289795 YP_760454.1 CDS HNE_1750 NC_008358.1 1791137 1791535 D hypothetical protein 1791137..1791535 Hyphomonas neptunium ATCC 15444 4287778 YP_760455.1 CDS nuoG NC_008358.1 1791542 1793641 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1791542..1793641 Hyphomonas neptunium ATCC 15444 4288604 YP_760456.1 CDS nuoH NC_008358.1 1793651 1794745 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1793651..1794745 Hyphomonas neptunium ATCC 15444 4287728 YP_760457.1 CDS nuoI NC_008358.1 1794742 1795227 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1794742..1795227 Hyphomonas neptunium ATCC 15444 4289462 YP_760458.1 CDS nuoJ NC_008358.1 1795299 1795892 D identified by similarity to SP:P50975; match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit J 1795299..1795892 Hyphomonas neptunium ATCC 15444 4287301 YP_760459.1 CDS nuoK NC_008358.1 1795896 1796204 D identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit K 1795896..1796204 Hyphomonas neptunium ATCC 15444 4287446 YP_760460.1 CDS nuoL NC_008358.1 1796212 1798362 D identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase subunit L 1796212..1798362 Hyphomonas neptunium ATCC 15444 4289296 YP_760461.1 CDS nuoM NC_008358.1 1798362 1799864 D identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit M 1798362..1799864 Hyphomonas neptunium ATCC 15444 4288270 YP_760462.1 CDS nuoN NC_008358.1 1799869 1801302 D identified by similarity to SP:P50973; match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH-quinone oxidoreductase subunit N 1799869..1801302 Hyphomonas neptunium ATCC 15444 4289254 YP_760463.1 CDS HNE_1759 NC_008358.1 1801266 1802033 D identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin--acetyl-CoA-carboxylase ligase 1801266..1802033 Hyphomonas neptunium ATCC 15444 4287112 YP_760464.1 CDS HNE_1760 NC_008358.1 1802037 1802804 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1802037..1802804 Hyphomonas neptunium ATCC 15444 4290166 YP_760465.1 CDS HNE_1761 NC_008358.1 1802801 1804498 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 1802801..1804498 Hyphomonas neptunium ATCC 15444 4288739 YP_760466.1 CDS HNE_1762 NC_008358.1 1804506 1804934 D identified by similarity to SP:Q96PE7; match to protein family HMM PF00903; methylmalonyl-CoA epimerase 1804506..1804934 Hyphomonas neptunium ATCC 15444 4289495 YP_760467.1 CDS HNE_1763 NC_008358.1 1804934 1805173 D identified by similarity to GB:CAE28374.1; hypothetical protein 1804934..1805173 Hyphomonas neptunium ATCC 15444 4287940 YP_760468.1 CDS proS NC_008358.1 1805221 1806540 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1805221..1806540 Hyphomonas neptunium ATCC 15444 4288680 YP_760469.1 CDS HNE_1765 NC_008358.1 1806549 1807820 D identified by match to protein family HMM PF02687; LolC/E family lipoprotein releasing system, transmembrane protein 1806549..1807820 Hyphomonas neptunium ATCC 15444 4287858 YP_760470.1 CDS HNE_1766 NC_008358.1 1807817 1808503 D identified by match to protein family HMM PF00005; lipoprotein releasing system ATP-binding protein-like protein 1807817..1808503 Hyphomonas neptunium ATCC 15444 4287145 YP_760471.1 CDS dnaE NC_008358.1 1808583 1812005 D identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1808583..1812005 Hyphomonas neptunium ATCC 15444 4289984 YP_760472.1 CDS rpsB NC_008358.1 1812145 1812936 D identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 1812145..1812936 Hyphomonas neptunium ATCC 15444 4287791 YP_760473.1 CDS tsf NC_008358.1 1812975 1813880 D identified by match to protein family HMM PF00627; match to protein family HMM PF00889; match to protein family HMM TIGR00116; translation elongation factor Ts 1812975..1813880 Hyphomonas neptunium ATCC 15444 4288581 YP_760474.1 CDS pyrH NC_008358.1 1813991 1814746 D identified by match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase 1813991..1814746 Hyphomonas neptunium ATCC 15444 4290392 YP_760475.1 CDS frr NC_008358.1 1814743 1815297 D identified by match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 1814743..1815297 Hyphomonas neptunium ATCC 15444 4288790 YP_760476.1 CDS uppS NC_008358.1 1815297 1816055 D identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1815297..1816055 Hyphomonas neptunium ATCC 15444 4290412 YP_760477.1 CDS cdsA NC_008358.1 1816055 1816873 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1816055..1816873 Hyphomonas neptunium ATCC 15444 4288497 YP_760478.1 CDS dxr NC_008358.1 1816880 1818073 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1816880..1818073 Hyphomonas neptunium ATCC 15444 4289919 YP_760479.1 CDS HNE_1775 NC_008358.1 1818078 1819241 D identified by match to protein family HMM PF00595; match to protein family HMM PF02163; M50 family peptidase 1818078..1819241 Hyphomonas neptunium ATCC 15444 4290466 YP_760480.1 CDS HNE_1776 NC_008358.1 1819278 1821842 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein 1819278..1821842 Hyphomonas neptunium ATCC 15444 4288468 YP_760481.1 CDS HNE_1777 NC_008358.1 1821875 1822471 D identified by match to protein family HMM PF03938; OmpH family outer membrane protein 1821875..1822471 Hyphomonas neptunium ATCC 15444 4288104 YP_760482.1 CDS lpxD NC_008358.1 1822484 1823500 D identified by match to protein family HMM PF00132; match to protein family HMM TIGR01853; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1822484..1823500 Hyphomonas neptunium ATCC 15444 4289288 YP_760483.1 CDS lpxA NC_008358.1 1823540 1824334 D identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase 1823540..1824334 Hyphomonas neptunium ATCC 15444 4289324 YP_760484.1 CDS HNE_1780 NC_008358.1 1824336 1825184 D identified by match to protein family HMM PF06230; hypothetical protein 1824336..1825184 Hyphomonas neptunium ATCC 15444 4287051 YP_760485.1 CDS lpxB NC_008358.1 1825181 1826353 D identified by similarity to GB:CAA60866.1; match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid-A-disaccharide synthase 1825181..1826353 Hyphomonas neptunium ATCC 15444 4288749 YP_760486.1 CDS gltA NC_008358.1 1826343 1827647 R identified by similarity to SP:P51037; match to protein family HMM PF00285; match to protein family HMM TIGR01798; citrate synthase I complement(1826343..1827647) Hyphomonas neptunium ATCC 15444 4288327 YP_760487.1 CDS gltX1 NC_008358.1 1827695 1829155 R identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase complement(1827695..1829155) Hyphomonas neptunium ATCC 15444 4289642 YP_760488.1 CDS HNE_1784 NC_008358.1 1829459 1829722 R hypothetical protein complement(1829459..1829722) Hyphomonas neptunium ATCC 15444 4288100 YP_760489.1 CDS HNE_1785 NC_008358.1 1829709 1830485 D hypothetical protein 1829709..1830485 Hyphomonas neptunium ATCC 15444 4289542 YP_760490.1 CDS lexA NC_008358.1 1830466 1831149 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1830466..1831149) Hyphomonas neptunium ATCC 15444 4287385 YP_760491.1 CDS trpC NC_008358.1 1831216 1832013 R identified by similarity to SP:P20577; match to protein family HMM PF00218; indole-3-glycerol phosphate synthase complement(1831216..1832013) Hyphomonas neptunium ATCC 15444 4290486 YP_760492.1 CDS trpD NC_008358.1 1832016 1833041 R identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM TIGR01245; anthranilate phosphoribosyltransferase complement(1832016..1833041) Hyphomonas neptunium ATCC 15444 4287141 YP_760493.1 CDS trpG NC_008358.1 1833038 1833610 R identified by similarity to GB:BAC65123.1; match to protein family HMM PF00117; match to protein family HMM TIGR00566; anthranilate synthase component II complement(1833038..1833610) Hyphomonas neptunium ATCC 15444 4289836 YP_760494.1 CDS trpE NC_008358.1 1833607 1835031 R identified by match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I complement(1833607..1835031) Hyphomonas neptunium ATCC 15444 4288961 YP_760495.1 CDS HNE_1791 NC_008358.1 1835028 1836941 R identified by similarity to SP:P77241; peptidylprolyl cis-trans isomerase-like protein complement(1835028..1836941) Hyphomonas neptunium ATCC 15444 4287464 YP_760496.1 CDS tpiA NC_008358.1 1837029 1837778 D identified by similarity to SP:P27876; match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase 1837029..1837778 Hyphomonas neptunium ATCC 15444 4288693 YP_760497.1 CDS secG NC_008358.1 1837859 1838314 D identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG 1837859..1838314 Hyphomonas neptunium ATCC 15444 4289149 YP_760498.1 CDS pyrG NC_008358.1 1838378 1840012 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1838378..1840012 Hyphomonas neptunium ATCC 15444 4289440 YP_760499.1 CDS HNE_1795 NC_008358.1 1840035 1841264 R identified by match to protein family HMM PF02353; putative cyclopropane-fatty-acyl-phospholipid synthase complement(1840035..1841264) Hyphomonas neptunium ATCC 15444 4290252 YP_760500.1 CDS HNE_1796 NC_008358.1 1841261 1842070 R identified by match to protein family HMM PF07103; hypothetical protein complement(1841261..1842070) Hyphomonas neptunium ATCC 15444 4287001 YP_760501.1 CDS HNE_1797 NC_008358.1 1842067 1843383 R identified by similarity to GB:BAB53726.1; match to protein family HMM PF01266; hypothetical protein complement(1842067..1843383) Hyphomonas neptunium ATCC 15444 4289721 YP_760502.1 CDS HNE_1798 NC_008358.1 1843380 1844837 R identified by match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase family protein complement(1843380..1844837) Hyphomonas neptunium ATCC 15444 4287672 YP_760503.1 CDS rfaE NC_008358.1 1844994 1846454 D identified by match to protein family HMM PF00294; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR02199; rfaE bifunctional protein 1844994..1846454 Hyphomonas neptunium ATCC 15444 4290013 YP_760504.1 CDS HNE_1800 NC_008358.1 1846495 1846947 R identified by match to protein family HMM TIGR02097; hemimethylated DNA binding domain-containing protein complement(1846495..1846947) Hyphomonas neptunium ATCC 15444 4288374 YP_760505.1 CDS HNE_1801 NC_008358.1 1847038 1848105 D identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase 1847038..1848105 Hyphomonas neptunium ATCC 15444 4290261 YP_760506.1 CDS HNE_1802 NC_008358.1 1848098 1848802 D identified by match to protein family HMM PF01728; putative ribosomal RNA large subunit methyltransferase J 1848098..1848802 Hyphomonas neptunium ATCC 15444 4287983 YP_760507.1 CDS HNE_1803 NC_008358.1 1848827 1849237 D identified by similarity to GB:BAC45879.1; match to protein family HMM PF04828; hypothetical protein 1848827..1849237 Hyphomonas neptunium ATCC 15444 4287889 YP_760508.1 CDS guaB NC_008358.1 1849300 1850757 D identified by match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 1849300..1850757 Hyphomonas neptunium ATCC 15444 4288206 YP_760509.1 CDS HNE_1805 NC_008358.1 1850759 1851346 R identified by match to protein family HMM PF00583; acetyltransferase complement(1850759..1851346) Hyphomonas neptunium ATCC 15444 4290272 YP_760510.1 CDS HNE_1806 NC_008358.1 1851448 1852755 D identified by match to protein family HMM PF01189; NOL1/NOP2/sun domain-containing protein 1851448..1852755 Hyphomonas neptunium ATCC 15444 4287178 YP_760511.1 CDS HNE_1807 NC_008358.1 1852759 1853835 R identified by match to protein family HMM PF05118; beta-hydroxylase complement(1852759..1853835) Hyphomonas neptunium ATCC 15444 4287064 YP_760512.1 CDS guaA NC_008358.1 1853924 1855504 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1853924..1855504 Hyphomonas neptunium ATCC 15444 4287046 YP_760513.1 CDS HNE_1809 NC_008358.1 1855670 1856755 D identified by match to protein family HMM PF01613; flavin reductase family protein 1855670..1856755 Hyphomonas neptunium ATCC 15444 4290461 YP_760514.1 CDS HNE_1810 NC_008358.1 1857062 1857865 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(1857062..1857865) Hyphomonas neptunium ATCC 15444 4290308 YP_760515.1 CDS HNE_1811 NC_008358.1 1857862 1858638 R identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase complement(1857862..1858638) Hyphomonas neptunium ATCC 15444 4288931 YP_760516.1 CDS HNE_1812 NC_008358.1 1858649 1859584 R identified by similarity to GB:AAF06832.1; putative DNA polymerase III, delta prime subunit complement(1858649..1859584) Hyphomonas neptunium ATCC 15444 4287759 YP_760517.1 CDS tmk NC_008358.1 1859581 1860240 R identified by match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase complement(1859581..1860240) Hyphomonas neptunium ATCC 15444 4287327 YP_760518.1 CDS HNE_1814 NC_008358.1 1860233 1861369 R identified by similarity to SP:P38422; match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase complement(1860233..1861369) Hyphomonas neptunium ATCC 15444 4288712 YP_760519.1 CDS rlpA NC_008358.1 1861505 1862737 R identified by match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A complement(1861505..1862737) Hyphomonas neptunium ATCC 15444 4288466 YP_760520.1 CDS HNE_1817 NC_008358.1 1863652 1864224 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 1863652..1864224 Hyphomonas neptunium ATCC 15444 4287329 YP_760521.1 CDS HNE_1818 NC_008358.1 1864443 1865981 D identified by match to protein family HMM PF03060; match to protein family HMM TIGR02814; 2-nitropropane dioxygenase 1864443..1865981 Hyphomonas neptunium ATCC 15444 4288579 YP_760522.1 CDS HNE_1820 NC_008358.1 1871324 1877404 D identified by match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF07977; putative polyketide synthase 1871324..1877404 Hyphomonas neptunium ATCC 15444 4288950 YP_760523.1 CDS HNE_1821 NC_008358.1 1878223 1879359 D identified by match to protein family HMM PF00691; OmpA family protein 1878223..1879359 Hyphomonas neptunium ATCC 15444 4288710 YP_760524.1 CDS HNE_1822 NC_008358.1 1879403 1881148 D identified by similarity to GB:AAK23082.1; hypothetical protein 1879403..1881148 Hyphomonas neptunium ATCC 15444 4288362 YP_760525.1 CDS fidA NC_008358.1 1881247 1882446 D identified by similarity to GB:AAL18808.1; match to protein family HMM PF02515; E-cinnamoyl-CoA:R-phenyllactate CoA transferase large subunit 1881247..1882446 Hyphomonas neptunium ATCC 15444 4288933 YP_760526.1 CDS HNE_1824 NC_008358.1 1882510 1883307 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(1882510..1883307) Hyphomonas neptunium ATCC 15444 4288753 YP_760527.1 CDS HNE_1825 NC_008358.1 1883334 1884134 R identified by similarity to GB:AAV93896.1; hypothetical protein complement(1883334..1884134) Hyphomonas neptunium ATCC 15444 4288395 YP_760528.1 CDS mmsB NC_008358.1 1884138 1885028 R identified by similarity to SP:P28811; match to protein family HMM PF03446; match to protein family HMM PF03807; match to protein family HMM TIGR01692; 3-hydroxyisobutyrate dehydrogenase complement(1884138..1885028) Hyphomonas neptunium ATCC 15444 4288156 YP_760529.1 CDS HNE_1827 NC_008358.1 1885030 1885806 R identified by similarity to SP:P14604; match to protein family HMM PF00378; enoyl-CoA hydratase complement(1885030..1885806) Hyphomonas neptunium ATCC 15444 4287608 YP_760530.1 CDS mmsA1 NC_008358.1 1885813 1887309 R identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722; methylmalonate-semialdehyde dehydrogenase complement(1885813..1887309) Hyphomonas neptunium ATCC 15444 4290080 YP_760531.1 CDS HNE_1830 NC_008358.1 1887693 1888877 D identified by match to protein family HMM PF04171; match to protein family HMM PF04235; hypothetical protein 1887693..1888877 Hyphomonas neptunium ATCC 15444 4289441 YP_760532.1 CDS metG NC_008358.1 1888945 1890684 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1888945..1890684 Hyphomonas neptunium ATCC 15444 4289596 YP_760533.1 CDS HNE_1832 NC_008358.1 1890689 1891171 D identified by similarity to PIR:G97490; match to protein family HMM PF04828; hypothetical protein 1890689..1891171 Hyphomonas neptunium ATCC 15444 4287291 YP_760534.1 CDS HNE_1833 NC_008358.1 1891168 1891824 R identified by similarity to GB:BAC91814.1; match to protein family HMM PF06080; hypothetical protein complement(1891168..1891824) Hyphomonas neptunium ATCC 15444 4289990 YP_760535.1 CDS HNE_1834 NC_008358.1 1891814 1892827 R identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase complement(1891814..1892827) Hyphomonas neptunium ATCC 15444 4290314 YP_760536.1 CDS fcs3 NC_008358.1 1892838 1894589 R identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; feruloyl-CoA synthetase complement(1892838..1894589) Hyphomonas neptunium ATCC 15444 4287890 YP_760537.1 CDS HNE_1836 NC_008358.1 1894768 1895349 R hypothetical protein complement(1894768..1895349) Hyphomonas neptunium ATCC 15444 4287036 YP_760538.1 CDS HNE_1837 NC_008358.1 1895384 1896025 R putative lipoprotein complement(1895384..1896025) Hyphomonas neptunium ATCC 15444 4289082 YP_760539.1 CDS dxs NC_008358.1 1896131 1898053 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1896131..1898053) Hyphomonas neptunium ATCC 15444 4289598 YP_760540.1 CDS ispA NC_008358.1 1898089 1898976 R identified by similarity to SP:P22939; match to protein family HMM PF00348; geranyltranstransferase complement(1898089..1898976) Hyphomonas neptunium ATCC 15444 4289927 YP_760541.1 CDS xseB NC_008358.1 1899008 1899253 R identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit complement(1899008..1899253) Hyphomonas neptunium ATCC 15444 4290483 YP_760542.1 CDS HNE_1841 NC_008358.1 1899325 1899927 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(1899325..1899927) Hyphomonas neptunium ATCC 15444 4290019 YP_760543.1 CDS lepB NC_008358.1 1900020 1900796 R identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I complement(1900020..1900796) Hyphomonas neptunium ATCC 15444 4287239 YP_760544.1 CDS HNE_1843 NC_008358.1 1900977 1902041 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(1900977..1902041) Hyphomonas neptunium ATCC 15444 4287735 YP_760545.1 CDS HNE_1844 NC_008358.1 1902097 1903215 R identified by similarity to SP:P32684; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase F complement(1902097..1903215) Hyphomonas neptunium ATCC 15444 4290133 YP_760546.1 CDS HNE_1845 NC_008358.1 1903285 1905054 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein complement(1903285..1905054) Hyphomonas neptunium ATCC 15444 4287358 YP_760547.1 CDS HNE_1846 NC_008358.1 1905176 1905916 D identified by match to protein family HMM PF04264; hypothetical protein 1905176..1905916 Hyphomonas neptunium ATCC 15444 4289769 YP_760548.1 CDS HNE_1847 NC_008358.1 1905923 1907131 D identified by match to protein family HMM PF01292; match to protein family HMM PF04264; nickel-dependent hydrogenase, b-type cytochrome subunit/YceI-like family protein 1905923..1907131 Hyphomonas neptunium ATCC 15444 4289176 YP_760549.1 CDS HNE_1848 NC_008358.1 1907192 1908133 D identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1907192..1908133 Hyphomonas neptunium ATCC 15444 4287782 YP_760550.1 CDS HNE_1849 NC_008358.1 1908144 1908356 R identified by similarity to GB:CAC46063.1; hypothetical protein complement(1908144..1908356) Hyphomonas neptunium ATCC 15444 4288513 YP_760551.1 CDS cysE NC_008358.1 1908449 1909258 R identified by similarity to SP:P05796; match to protein family HMM PF00132; match to protein family HMM PF06426; match to protein family HMM TIGR01172; serine O-acetyltransferase complement(1908449..1909258) Hyphomonas neptunium ATCC 15444 4288452 YP_760552.1 CDS HNE_1851 NC_008358.1 1909331 1912459 R identified by match to protein family HMM PF00873; RND efflux transporter complement(1909331..1912459) Hyphomonas neptunium ATCC 15444 4288722 YP_760553.1 CDS HNE_1852 NC_008358.1 1912478 1913707 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1912478..1913707) Hyphomonas neptunium ATCC 15444 4288122 YP_760554.1 CDS HNE_1853 NC_008358.1 1913662 1914363 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1913662..1914363) Hyphomonas neptunium ATCC 15444 4287684 YP_760555.1 CDS HNE_1854 NC_008358.1 1914504 1915142 D identified by match to protein family HMM PF00881; nitroreductase family protein 1914504..1915142 Hyphomonas neptunium ATCC 15444 4290085 YP_760556.1 CDS folE1 NC_008358.1 1915189 1915656 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1915189..1915656) Hyphomonas neptunium ATCC 15444 4287423 YP_760557.1 CDS HNE_1856 NC_008358.1 1915649 1916668 R identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; K+-dependent Na+/Ca+ exchanger-like protein complement(1915649..1916668) Hyphomonas neptunium ATCC 15444 4289880 YP_760558.1 CDS HNE_1857 NC_008358.1 1916843 1918663 D identified by match to protein family HMM PF01103; OMP85 family outer membrane protein 1916843..1918663 Hyphomonas neptunium ATCC 15444 4288251 YP_760559.1 CDS HNE_1858 NC_008358.1 1918663 1922778 D identified by similarity to GB:AAK23583.1; match to protein family HMM PF04357; hypothetical protein 1918663..1922778 Hyphomonas neptunium ATCC 15444 4288002 YP_760560.1 CDS HNE_1859 NC_008358.1 1922957 1923340 D identified by match to protein family HMM PF01381; DNA-binding protein 1922957..1923340 Hyphomonas neptunium ATCC 15444 4287082 YP_760561.1 CDS HNE_1860 NC_008358.1 1923414 1924235 R identified by match to protein family HMM PF00188; SCP-like extracellular family protein complement(1923414..1924235) Hyphomonas neptunium ATCC 15444 4290064 YP_760562.1 CDS HNE_1861 NC_008358.1 1924314 1925210 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1924314..1925210 Hyphomonas neptunium ATCC 15444 4289591 YP_760563.1 CDS HNE_1862 NC_008358.1 1925397 1926944 D identified by similarity to GB:AAM35581.1; putative lipoprotein 1925397..1926944 Hyphomonas neptunium ATCC 15444 4290197 YP_760564.1 CDS HNE_1863 NC_008358.1 1927024 1929675 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1927024..1929675 Hyphomonas neptunium ATCC 15444 4290262 YP_760565.1 CDS gspC NC_008358.1 1929913 1930788 D general secretion pathway protein C 1929913..1930788 Hyphomonas neptunium ATCC 15444 4290348 YP_760566.1 CDS gspD NC_008358.1 1930785 1932746 D identified by similarity to GB:AAD05173.1; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517; general secretion pathway protein D 1930785..1932746 Hyphomonas neptunium ATCC 15444 4289940 YP_760567.1 CDS gspE NC_008358.1 1932754 1934244 D identified by match to protein family HMM PF00437; match to protein family HMM TIGR02533; general secretory pathway protein E 1932754..1934244 Hyphomonas neptunium ATCC 15444 4290076 YP_760568.1 CDS gspF NC_008358.1 1934231 1935442 D identified by similarity to GB:AAD05175.1; match to protein family HMM PF00482; match to protein family HMM TIGR02120; general secretion pathway protein F 1934231..1935442 Hyphomonas neptunium ATCC 15444 4287244 YP_760569.1 CDS gspG1 NC_008358.1 1935455 1935913 D identified by similarity to GB:AAD05177.1; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 1935455..1935913 Hyphomonas neptunium ATCC 15444 4290520 YP_760570.1 CDS gspH NC_008358.1 1935922 1936428 D identified by similarity to GB:AAD05178.1; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532; general secretion pathway protein H 1935922..1936428 Hyphomonas neptunium ATCC 15444 4289033 YP_760571.1 CDS gspI NC_008358.1 1936428 1936802 D identified by similarity to SP:Q00516; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532; general secretion pathway protein I 1936428..1936802 Hyphomonas neptunium ATCC 15444 4286982 YP_760572.1 CDS gspJ NC_008358.1 1936799 1937419 D identified by similarity to SP:Q00517; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532; general secretion pathway protein J 1936799..1937419 Hyphomonas neptunium ATCC 15444 4289946 YP_760573.1 CDS gspK NC_008358.1 1937416 1938387 D identified by similarity to SP:P31706; match to protein family HMM PF03934; general secretion pathway protein K 1937416..1938387 Hyphomonas neptunium ATCC 15444 4287105 YP_760574.1 CDS gspL NC_008358.1 1938387 1939490 D identified by similarity to SP:P45789; match to protein family HMM PF05134; match to protein family HMM TIGR01709; general secretion pathway protein L 1938387..1939490 Hyphomonas neptunium ATCC 15444 4289430 YP_760575.1 CDS gspM NC_008358.1 1939487 1939978 D identified by similarity to GB:AAD05183.1; general secretion pathway protein M 1939487..1939978 Hyphomonas neptunium ATCC 15444 4288906 YP_760576.1 CDS gspN NC_008358.1 1939978 1940733 D identified by match to protein family HMM PF01203; general secretion pathway protein N 1939978..1940733 Hyphomonas neptunium ATCC 15444 4287402 YP_760577.1 CDS HNE_1876 NC_008358.1 1940730 1941218 D identified by similarity to SP:P11910; hypothetical protein 1940730..1941218 Hyphomonas neptunium ATCC 15444 4287276 YP_760578.1 CDS HNE_1877 NC_008358.1 1941247 1941594 R identified by match to protein family HMM PF01381; DNA-binding protein complement(1941247..1941594) Hyphomonas neptunium ATCC 15444 4289381 YP_760579.1 CDS sdaA NC_008358.1 1941686 1943062 R identified by similarity to SP:P16095; match to protein family HMM PF03313; match to protein family HMM PF03315; match to protein family HMM TIGR00720; L-serine ammonia-lyase complement(1941686..1943062) Hyphomonas neptunium ATCC 15444 4287564 YP_760580.1 CDS HNE_1879 NC_008358.1 1943135 1944322 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; monooxygenase complement(1943135..1944322) Hyphomonas neptunium ATCC 15444 4288509 YP_760581.1 CDS HNE_1880 NC_008358.1 1944356 1944559 R identified by similarity to GB:AAK22176.1; hypothetical protein complement(1944356..1944559) Hyphomonas neptunium ATCC 15444 4289280 YP_760582.1 CDS HNE_1881 NC_008358.1 1944678 1945619 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1944678..1945619 Hyphomonas neptunium ATCC 15444 4289934 YP_760583.1 CDS trx NC_008358.1 1945641 1945961 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(1945641..1945961) Hyphomonas neptunium ATCC 15444 4288619 YP_760584.1 CDS addA NC_008358.1 1946026 1949532 R identified by match to protein family HMM PF00580; match to protein family HMM TIGR02784; double-strand break repair helicase AddA complement(1946026..1949532) Hyphomonas neptunium ATCC 15444 4287444 YP_760585.1 CDS HNE_1884 NC_008358.1 1949525 1952578 R hypothetical protein complement(1949525..1952578) Hyphomonas neptunium ATCC 15444 4288854 YP_760586.1 CDS HNE_1885 NC_008358.1 1952568 1953293 R identified by match to protein family HMM PF00483; nucleotidyl transferase family protein complement(1952568..1953293) Hyphomonas neptunium ATCC 15444 4287641 YP_760587.1 CDS HNE_1886 NC_008358.1 1953290 1954390 R identified by similarity to GB:AAK25497.1; match to protein family HMM PF01636; hypothetical protein complement(1953290..1954390) Hyphomonas neptunium ATCC 15444 4288754 YP_760588.1 CDS HNE_1887 NC_008358.1 1954374 1954829 R identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein complement(1954374..1954829) Hyphomonas neptunium ATCC 15444 4289742 YP_760589.1 CDS HNE_1888 NC_008358.1 1954986 1956230 D identified by similarity to GB:CAC37905.1; match to protein family HMM PF00070; match to protein family HMM PF01262; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 1954986..1956230 Hyphomonas neptunium ATCC 15444 4289092 YP_760590.1 CDS fdxB NC_008358.1 1956248 1956568 D identified by similarity to SP:P37098; match to protein family HMM PF00111; ferredoxin, 2Fe-2S 1956248..1956568 Hyphomonas neptunium ATCC 15444 4288740 YP_760591.1 CDS HNE_1890 NC_008358.1 1956703 1957488 D hypothetical protein 1956703..1957488 Hyphomonas neptunium ATCC 15444 4287585 YP_760592.1 CDS atpC NC_008358.1 1957560 1957967 R identified by match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon complement(1957560..1957967) Hyphomonas neptunium ATCC 15444 4288235 YP_760593.1 CDS atpD NC_008358.1 1957979 1959406 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1957979..1959406) Hyphomonas neptunium ATCC 15444 4288863 YP_760594.1 CDS atpG NC_008358.1 1959453 1960331 R identified by similarity to SP:P05436; match to protein family HMM PF00231; match to protein family HMM TIGR01146; ATP synthase F1 subunit gamma complement(1959453..1960331) Hyphomonas neptunium ATCC 15444 4289450 YP_760595.1 CDS atpA NC_008358.1 1960367 1961902 R identified by similarity to SP:P05439; match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR00962; ATP synthase F1 subunit alpha complement(1960367..1961902) Hyphomonas neptunium ATCC 15444 4288912 YP_760596.1 CDS atpH NC_008358.1 1961911 1962456 R identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta complement(1961911..1962456) Hyphomonas neptunium ATCC 15444 4287196 YP_760597.1 CDS priA NC_008358.1 1962664 1964862 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1962664..1964862) Hyphomonas neptunium ATCC 15444 4287154 YP_760598.1 CDS HNE_1897 NC_008358.1 1964922 1965500 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1964922..1965500) Hyphomonas neptunium ATCC 15444 4288999 YP_760599.1 CDS HNE_1898 NC_008358.1 1965589 1966008 D identified by match to protein family HMM PF03061; thioesterase family protein 1965589..1966008 Hyphomonas neptunium ATCC 15444 4290289 YP_760600.1 CDS HNE_1899 NC_008358.1 1966085 1967077 D identified by match to protein family HMM PF07728; AAA ATPase 1966085..1967077 Hyphomonas neptunium ATCC 15444 4289532 YP_760601.1 CDS HNE_1900 NC_008358.1 1967090 1968451 D identified by match to protein family HMM PF05762; VWA domain-containing protein 1967090..1968451 Hyphomonas neptunium ATCC 15444 4288257 YP_760602.1 CDS ccrM NC_008358.1 1968462 1969544 R identified by similarity to SP:Q45971; match to protein family HMM PF01555; modification methylase CcrM complement(1968462..1969544) Hyphomonas neptunium ATCC 15444 4289868 YP_760603.1 CDS HNE_1902 NC_008358.1 1969737 1971368 D identified by match to protein family HMM PF02690; Na/Pi cotransporter family protein 1969737..1971368 Hyphomonas neptunium ATCC 15444 4288469 YP_760604.1 CDS HNE_1903 NC_008358.1 1971365 1972438 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(1971365..1972438) Hyphomonas neptunium ATCC 15444 4289876 YP_760605.1 CDS HNE_1904 NC_008358.1 1972547 1973164 R identified by similarity to GB:CAE11027.1; hypothetical protein complement(1972547..1973164) Hyphomonas neptunium ATCC 15444 4287390 YP_760606.1 CDS HNE_1905 NC_008358.1 1973272 1973769 D hypothetical protein 1973272..1973769 Hyphomonas neptunium ATCC 15444 4287937 YP_760607.1 CDS HNE_1906 NC_008358.1 1973766 1974449 R identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(1973766..1974449) Hyphomonas neptunium ATCC 15444 4290169 YP_760608.1 CDS HNE_1907 NC_008358.1 1974535 1975011 D identified by similarity to GB:AAO56273.1; match to protein family HMM PF01814; hypothetical protein 1974535..1975011 Hyphomonas neptunium ATCC 15444 4287006 YP_760609.1 CDS HNE_1908 NC_008358.1 1975012 1975752 R identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase complement(1975012..1975752) Hyphomonas neptunium ATCC 15444 4290377 YP_760610.1 CDS HNE_1909 NC_008358.1 1975898 1977577 D identified by similarity to SP:Q16134; match to protein family HMM PF01266; match to protein family HMM PF05187; putative electron transfer flavoprotein-ubiquinone oxidoreductase 1975898..1977577 Hyphomonas neptunium ATCC 15444 4288064 YP_760611.1 CDS HNE_1910 NC_008358.1 1977715 1979649 D identified by similarity to GB:AAQ61721.1; match to protein family HMM PF07721; putative lipoprotein 1977715..1979649 Hyphomonas neptunium ATCC 15444 4289957 YP_760612.1 CDS mrcA NC_008358.1 1979762 1982368 D identified by similarity to SP:P02918; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074; penicillin-binding protein 1A 1979762..1982368 Hyphomonas neptunium ATCC 15444 4287263 YP_760613.1 CDS prfB NC_008358.1 1982462 1983569 D identified by similarity to SP:P07012; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift join(1982462..1982530,1982532..1983569) Hyphomonas neptunium ATCC 15444 4289902 YP_760614.1 CDS HNE_1913 NC_008358.1 1983566 1984210 D identified by match to protein family HMM PF00313; match to protein family HMM PF06961; cold shock DNA-binding membrane protein 1983566..1984210 Hyphomonas neptunium ATCC 15444 4290507 YP_760615.1 CDS mutY NC_008358.1 1984197 1985240 R identified by similarity to SP:P17802; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(1984197..1985240) Hyphomonas neptunium ATCC 15444 4288698 YP_760616.1 CDS HNE_1915 NC_008358.1 1985286 1985822 D hypothetical protein 1985286..1985822 Hyphomonas neptunium ATCC 15444 4290216 YP_760617.1 CDS HNE_1916 NC_008358.1 1985893 1986564 D identified by match to protein family HMM PF01323; DSBA-like thioredoxin domain-containing protein 1985893..1986564 Hyphomonas neptunium ATCC 15444 4287867 YP_760618.1 CDS smc NC_008358.1 1986580 1990041 D identified by match to protein family HMM PF02463; match to protein family HMM PF02483; match to protein family HMM PF06470; match to protein family HMM TIGR02168; chromosome segregation protein SMC 1986580..1990041 Hyphomonas neptunium ATCC 15444 4288398 YP_760619.1 CDS HNE_1918 NC_008358.1 1990191 1990553 D identified by similarity to SP:P15011; putative ATP synthase subunit I 1990191..1990553 Hyphomonas neptunium ATCC 15444 4287591 YP_760620.1 CDS atpB NC_008358.1 1990559 1991320 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1990559..1991320 Hyphomonas neptunium ATCC 15444 4288639 YP_760621.1 CDS atpE NC_008358.1 1991437 1991673 D identified by match to protein family HMM PF00137; ATP synthase F0 subunit C 1991437..1991673 Hyphomonas neptunium ATCC 15444 4287555 YP_760622.1 CDS HNE_1921 NC_008358.1 1991719 1992258 D identified by match to protein family HMM PF00430; ATP synthase F0 subunit B family protein 1991719..1992258 Hyphomonas neptunium ATCC 15444 4288636 YP_760623.1 CDS HNE_1922 NC_008358.1 1992258 1992827 D identified by match to protein family HMM PF00430; ATP synthase F0 subunit B family protein 1992258..1992827 Hyphomonas neptunium ATCC 15444 4289531 YP_760624.1 CDS HNE_1923 NC_008358.1 1992958 1993872 R hypothetical protein complement(1992958..1993872) Hyphomonas neptunium ATCC 15444 4287144 YP_760625.1 CDS HNE_1924 NC_008358.1 1994021 1995118 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1994021..1995118 Hyphomonas neptunium ATCC 15444 4289084 YP_760626.1 CDS secF NC_008358.1 1995200 1996189 R identified by match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; protein-export membrane protein SecF complement(1995200..1996189) Hyphomonas neptunium ATCC 15444 4290503 YP_760627.1 CDS secD1 NC_008358.1 1996208 1997815 R identified by match to protein family HMM PF02355; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD complement(1996208..1997815) Hyphomonas neptunium ATCC 15444 4287407 YP_760628.1 CDS yajC NC_008358.1 1997852 1998226 R identified by match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC complement(1997852..1998226) Hyphomonas neptunium ATCC 15444 4288221 YP_760629.1 CDS pcm NC_008358.1 1998332 1998991 R identified by similarity to SP:P24206; match to protein family HMM PF01135; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1998332..1998991) Hyphomonas neptunium ATCC 15444 4290467 YP_760630.1 CDS surE NC_008358.1 1998979 1999740 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(1998979..1999740) Hyphomonas neptunium ATCC 15444 4288504 YP_760631.1 CDS serS NC_008358.1 1999780 2001078 R identified by match to protein family HMM PF00587; match to protein family HMM PF02403; match to protein family HMM TIGR00414; seryl-tRNA synthetase complement(1999780..2001078) Hyphomonas neptunium ATCC 15444 4288182 YP_760632.1 CDS HNE_1931 NC_008358.1 2001470 2001580 D hypothetical protein 2001470..2001580 Hyphomonas neptunium ATCC 15444 4287885 YP_760633.1 CDS tatC NC_008358.1 2002420 2003247 R identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC complement(2002420..2003247) Hyphomonas neptunium ATCC 15444 4288502 YP_760634.1 CDS tatA1 NC_008358.1 2003244 2003666 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation protein TatA complement(2003244..2003666) Hyphomonas neptunium ATCC 15444 4288692 YP_760635.1 CDS tatA2 NC_008358.1 2003692 2003904 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin arginine-targeting protein translocase complement(2003692..2003904) Hyphomonas neptunium ATCC 15444 4287528 YP_760636.1 CDS xth NC_008358.1 2003988 2004764 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 2003988..2004764 Hyphomonas neptunium ATCC 15444 4287848 YP_760637.1 CDS HNE_1936 NC_008358.1 2004790 2005131 D identified by match to protein family HMM PF04342; hypothetical protein 2004790..2005131 Hyphomonas neptunium ATCC 15444 4288511 YP_760638.1 CDS purQ NC_008358.1 2005489 2006157 D identified by match to protein family HMM PF07685; match to protein family HMM TIGR01737; phosphoribosylformylglycinamidine synthase I 2005489..2006157 Hyphomonas neptunium ATCC 15444 4288996 YP_760639.1 CDS add NC_008358.1 2006154 2007167 D identified by match to protein family HMM PF00962; match to protein family HMM TIGR01430; adenosine deaminase 2006154..2007167 Hyphomonas neptunium ATCC 15444 4288481 YP_760640.1 CDS HNE_1939 NC_008358.1 2007195 2007866 R hypothetical protein complement(2007195..2007866) Hyphomonas neptunium ATCC 15444 4289506 YP_760641.1 CDS HNE_1940 NC_008358.1 2007981 2009114 R identified by match to protein family HMM PF01266; FAD-binding oxidoreductase complement(2007981..2009114) Hyphomonas neptunium ATCC 15444 4288319 YP_760642.1 CDS HNE_1941 NC_008358.1 2009156 2010769 D identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721; TPR/sulfotransferase domain-containing protein 2009156..2010769 Hyphomonas neptunium ATCC 15444 4290426 YP_760643.1 CDS purL NC_008358.1 2010803 2013064 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR01736; phosphoribosylformylglycinamidine synthase II 2010803..2013064 Hyphomonas neptunium ATCC 15444 4289407 YP_760644.1 CDS HNE_1943 NC_008358.1 2013144 2013749 R identified by match to protein family HMM PF01389; OmpA family protein complement(2013144..2013749) Hyphomonas neptunium ATCC 15444 4288329 YP_760645.1 CDS HNE_1944 NC_008358.1 2014008 2014520 R hypothetical protein complement(2014008..2014520) Hyphomonas neptunium ATCC 15444 4288707 YP_760646.1 CDS HNE_1945 NC_008358.1 2014517 2015533 R identified by match to protein family HMM PF01546; match to protein family HMM PF04389; M20/M25/M40 family peptidase complement(2014517..2015533) Hyphomonas neptunium ATCC 15444 4289421 YP_760647.1 CDS HNE_1946 NC_008358.1 2015648 2015881 D identified by match to protein family HMM PF01722; BolA/YrbA family protein 2015648..2015881 Hyphomonas neptunium ATCC 15444 4289325 YP_760648.1 CDS HNE_1947 NC_008358.1 2015958 2017805 D identified by match to protein family HMM PF01401; angiotensin-converting enzyme family protein 2015958..2017805 Hyphomonas neptunium ATCC 15444 4288393 YP_760649.1 CDS HNE_1948 NC_008358.1 2017969 2018895 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne4, transposase complement(2017969..2018895) Hyphomonas neptunium ATCC 15444 4287110 YP_760650.1 CDS HNE_1949 NC_008358.1 2019757 2020092 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 2019757..2020092 Hyphomonas neptunium ATCC 15444 4287438 YP_760651.1 CDS HNE_1950 NC_008358.1 2020193 2020855 D identified by similarity to GB:AAB81575.1; putative outer surface protein 2020193..2020855 Hyphomonas neptunium ATCC 15444 4287213 YP_760652.1 CDS rimO NC_008358.1 2020928 2022283 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase 2020928..2022283 Hyphomonas neptunium ATCC 15444 4289303 YP_760653.1 CDS HNE_1952 NC_008358.1 2022284 2022982 R identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965; putative isonitrile hydratase complement(2022284..2022982) Hyphomonas neptunium ATCC 15444 4288271 YP_760654.1 CDS HNE_1953 NC_008358.1 2023049 2024017 D identified by similarity to GB:AAN18035.1; match to protein family HMM PF00165; match to protein family HMM PF01965; putative transcriptional regulator DarR 2023049..2024017 Hyphomonas neptunium ATCC 15444 4288263 YP_760655.1 CDS HNE_1954 NC_008358.1 2024112 2025041 D identified by similarity to GB:AAO78504.1; hypothetical protein 2024112..2025041 Hyphomonas neptunium ATCC 15444 4289573 YP_760656.1 CDS HNE_1955 NC_008358.1 2025065 2025889 R identified by similarity to GB:CAD13666.1; match to protein family HMM PF03976; hypothetical protein complement(2025065..2025889) Hyphomonas neptunium ATCC 15444 4288139 YP_760657.1 CDS rpsD NC_008358.1 2025965 2026582 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(2025965..2026582) Hyphomonas neptunium ATCC 15444 4290298 YP_760658.1 CDS HNE_1957 NC_008358.1 2026788 2027606 D identified by similarity to SP:P50198; match to protein family HMM PF00106; putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX 2026788..2027606 Hyphomonas neptunium ATCC 15444 4288289 YP_760659.1 CDS HNE_1958 NC_008358.1 2027603 2028070 R identified by match to protein family HMM PF07883; cupin domain-containing protein complement(2027603..2028070) Hyphomonas neptunium ATCC 15444 4288799 YP_760660.1 CDS HNE_1959 NC_008358.1 2028087 2029289 R identified by match to protein family HMM PF02515; CAIB/BAIF family protein complement(2028087..2029289) Hyphomonas neptunium ATCC 15444 4289770 YP_760661.1 CDS HNE_1960 NC_008358.1 2029370 2030245 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(2029370..2030245) Hyphomonas neptunium ATCC 15444 4288080 YP_760662.1 CDS groES NC_008358.1 2030725 2031015 D identified by match to protein family HMM PF00166; chaperonin, 10 kDa 2030725..2031015 Hyphomonas neptunium ATCC 15444 4287896 YP_760663.1 CDS groL NC_008358.1 2031071 2032714 D identified by match to protein family HMM PF00118; match to protein family HMM TIGR02348; chaperonin GroEL 2031071..2032714 Hyphomonas neptunium ATCC 15444 4290372 YP_760664.1 CDS HNE_1963 NC_008358.1 2032851 2034461 D activates fatty acids by binding to coenzyme A; in Mycobacterium may be involved in virulence; acyl-CoA synthetase 2032851..2034461 Hyphomonas neptunium ATCC 15444 4288964 YP_760665.1 CDS HNE_1964 NC_008358.1 2034467 2034907 R identified by match to protein family HMM PF03061; thioesterase family protein complement(2034467..2034907) Hyphomonas neptunium ATCC 15444 4290310 YP_760666.1 CDS HNE_1965 NC_008358.1 2034894 2035346 R identified by similarity to GB:BAC49676.1; match to protein family HMM PF02643; hypothetical protein complement(2034894..2035346) Hyphomonas neptunium ATCC 15444 4289154 YP_760667.1 CDS HNE_1966 NC_008358.1 2035400 2035927 R identified by match to protein family HMM PF00313; cold shock DNA-binding protein complement(2035400..2035927) Hyphomonas neptunium ATCC 15444 4287243 YP_760668.1 CDS recJ NC_008358.1 2036206 2037999 R identified by match to protein family HMM PF01336; match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644; single-stranded-DNA-specific exonuclease RecJ complement(2036206..2037999) Hyphomonas neptunium ATCC 15444 4287271 YP_760669.1 CDS purB NC_008358.1 2038174 2039472 D identified by match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase 2038174..2039472 Hyphomonas neptunium ATCC 15444 4290131 YP_760670.1 CDS HNE_1970 NC_008358.1 2039612 2040907 D identified by match to protein family HMM PF01244; dipeptidase family protein 2039612..2040907 Hyphomonas neptunium ATCC 15444 4290045 YP_760671.1 CDS HNE_1971 NC_008358.1 2040910 2042268 D identified by match to protein family HMM PF03553; Na+/H+ antiporter family protein 2040910..2042268 Hyphomonas neptunium ATCC 15444 4289054 YP_760672.1 CDS HNE_1972 NC_008358.1 2042361 2043104 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2042361..2043104 Hyphomonas neptunium ATCC 15444 4288434 YP_760673.1 CDS HNE_1973 NC_008358.1 2043287 2045449 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2043287..2045449 Hyphomonas neptunium ATCC 15444 4288021 YP_760674.1 CDS lpdA1 NC_008358.1 2045536 2046951 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01350; pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase complement(2045536..2046951) Hyphomonas neptunium ATCC 15444 4287161 YP_760675.1 CDS pdhC NC_008358.1 2046976 2048307 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM TIGR01349; pyruvate dehydrogenase complex, E2 component, dihydrolipoyllysine-residue acetyltransferase complement(2046976..2048307) Hyphomonas neptunium ATCC 15444 4288007 YP_760676.1 CDS pdhB NC_008358.1 2048307 2049719 R catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta complement(2048307..2049719) Hyphomonas neptunium ATCC 15444 4288231 YP_760677.1 CDS pdhA NC_008358.1 2049784 2050794 R identified by similarity to SP:Q9R9N5; match to protein family HMM PF00676; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase subunit alpha complement(2049784..2050794) Hyphomonas neptunium ATCC 15444 4289072 YP_760678.1 CDS HNE_1978 NC_008358.1 2050861 2051166 R identified by match to protein family HMM PF04977; septum formation initiator family protein complement(2050861..2051166) Hyphomonas neptunium ATCC 15444 4290481 YP_760679.1 CDS HNE_1979 NC_008358.1 2051247 2053118 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase complement(2051247..2053118) Hyphomonas neptunium ATCC 15444 4287137 YP_760680.1 CDS eno NC_008358.1 2053244 2054524 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2053244..2054524) Hyphomonas neptunium ATCC 15444 4288356 YP_760681.1 CDS rpmF NC_008358.1 2054634 2054819 R identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; 50S ribosomal protein L32 complement(2054634..2054819) Hyphomonas neptunium ATCC 15444 4287650 YP_760682.1 CDS HNE_1982 NC_008358.1 2055223 2055960 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(2055223..2055960) Hyphomonas neptunium ATCC 15444 4287310 YP_760683.1 CDS HNE_1983 NC_008358.1 2055960 2057057 R identified by match to protein family HMM PF02515; putative alpha-methylacyl-CoA racemase complement(2055960..2057057) Hyphomonas neptunium ATCC 15444 4287117 YP_760684.1 CDS HNE_1984 NC_008358.1 2057188 2058450 D hypothetical protein 2057188..2058450 Hyphomonas neptunium ATCC 15444 4289669 YP_760685.1 CDS mfd NC_008358.1 2058461 2061898 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(2058461..2061898) Hyphomonas neptunium ATCC 15444 4287505 YP_760686.1 CDS HNE_1986 NC_008358.1 2062055 2062318 R identified by match to protein family HMM PF03937; hypothetical protein complement(2062055..2062318) Hyphomonas neptunium ATCC 15444 4289361 YP_760687.1 CDS HNE_1987 NC_008358.1 2062535 2064613 D identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; putative ATP-dependent DNA helicase recG 2062535..2064613 Hyphomonas neptunium ATCC 15444 4288352 YP_760688.1 CDS HNE_1988 NC_008358.1 2064619 2065332 R identified by similarity to PIR:AI2795; match to protein family HMM PF04367; hypothetical protein complement(2064619..2065332) Hyphomonas neptunium ATCC 15444 4290430 YP_760689.1 CDS HNE_1989 NC_008358.1 2065412 2066422 D identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 2065412..2066422 Hyphomonas neptunium ATCC 15444 4289950 YP_760690.1 CDS HNE_1990 NC_008358.1 2066415 2066786 D hypothetical protein 2066415..2066786 Hyphomonas neptunium ATCC 15444 4289278 YP_760691.1 CDS HNE_1991 NC_008358.1 2066802 2067530 D hypothetical protein 2066802..2067530 Hyphomonas neptunium ATCC 15444 4287048 YP_760692.1 CDS maiA NC_008358.1 2067540 2068190 R identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262; maleylacetoacetate isomerase complement(2067540..2068190) Hyphomonas neptunium ATCC 15444 4289528 YP_760693.1 CDS astB NC_008358.1 2068187 2069509 R catalyzes the hydrolysis of 2-N-succinylarginine into 2-N-succinylornithine, ammonia and carbon dioxide in arginine degradation; succinylarginine dihydrolase complement(2068187..2069509) Hyphomonas neptunium ATCC 15444 4287580 YP_760694.1 CDS HNE_1994 NC_008358.1 2069506 2070339 R identified by match to protein family HMM PF05175; putative methyltransferase complement(2069506..2070339) Hyphomonas neptunium ATCC 15444 4288677 YP_760695.1 CDS astD NC_008358.1 2070351 2071805 R identified by similarity to SP:P76217; match to protein family HMM PF00171; succinylglutamic semialdehyde dehydrogenase complement(2070351..2071805) Hyphomonas neptunium ATCC 15444 4289961 YP_760696.1 CDS astA NC_008358.1 2071805 2072845 R identified by match to protein family HMM PF04958; arginine N-succinyltransferase complement(2071805..2072845) Hyphomonas neptunium ATCC 15444 4288767 YP_760697.1 CDS HNE_1997 NC_008358.1 2072846 2074033 R identified by match to protein family HMM PF01546; match to protein family HMM PF07687; hypothetical protein complement(2072846..2074033) Hyphomonas neptunium ATCC 15444 4288273 YP_760698.1 CDS HNE_1998 NC_008358.1 2074218 2075381 R identified by match to protein family HMM PF00691; OmpA family protein complement(2074218..2075381) Hyphomonas neptunium ATCC 15444 4288859 YP_760699.1 CDS nusG NC_008358.1 2076100 2076642 R identified by similarity to SP:P16921; match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG complement(2076100..2076642) Hyphomonas neptunium ATCC 15444 4288035 YP_760700.1 CDS secE NC_008358.1 2076687 2076905 R identified by match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE complement(2076687..2076905) Hyphomonas neptunium ATCC 15444 4288266 YP_760701.1 CDS HNE_2002 NC_008358.1 2077049 2077939 R identified by match to protein family HMM PF03758; senescence marker protein-30 family protein complement(2077049..2077939) Hyphomonas neptunium ATCC 15444 4288170 YP_760702.1 CDS HNE_2003 NC_008358.1 2077976 2078848 R identified by similarity to SP:P31459; putative 2-dehydro-3-deoxygalactonokinase complement(2077976..2078848) Hyphomonas neptunium ATCC 15444 4290416 YP_760703.1 CDS HNE_2004 NC_008358.1 2079003 2079830 D identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444; MazG family protein 2079003..2079830 Hyphomonas neptunium ATCC 15444 4288855 YP_760704.1 CDS HNE_2005 NC_008358.1 2079844 2081172 R identified by match to protein family HMM PF01926; putative GTP-binding protein HflX complement(2079844..2081172) Hyphomonas neptunium ATCC 15444 4288919 YP_760705.1 CDS hfq NC_008358.1 2081180 2081428 R Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq complement(2081180..2081428) Hyphomonas neptunium ATCC 15444 4289320 YP_760706.1 CDS HNE_2007 NC_008358.1 2081505 2082911 R identified by similarity to SP:P21166; putative potassium uptake protein TrkH complement(2081505..2082911) Hyphomonas neptunium ATCC 15444 4287081 YP_760707.1 CDS trkA NC_008358.1 2082915 2084288 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein complement(2082915..2084288) Hyphomonas neptunium ATCC 15444 4288523 YP_760708.1 CDS ntrX NC_008358.1 2084313 2085698 R identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(2084313..2085698) Hyphomonas neptunium ATCC 15444 4288435 YP_760709.1 CDS ntrY NC_008358.1 2085712 2087991 R identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; nitrogen regulation protein NtrY complement(2085712..2087991) Hyphomonas neptunium ATCC 15444 4287482 YP_760710.1 CDS glnG NC_008358.1 2088097 2089470 R identified by similarity to SP:P06713; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; nitrogen regulation protein NR(I) complement(2088097..2089470) Hyphomonas neptunium ATCC 15444 4289660 YP_760711.1 CDS glnL NC_008358.1 2089476 2090534 R identified by similarity to SP:P45670; match to protein family HMM PF00512; match to protein family HMM PF02518; nitrogen regulation protein NR(II) complement(2089476..2090534) Hyphomonas neptunium ATCC 15444 4288995 YP_760712.1 CDS HNE_2013 NC_008358.1 2090531 2091568 R identified by similarity to SP:Q08111; match to protein family HMM PF01207; putative tRNA-dihydrouridine synthase complement(2090531..2091568) Hyphomonas neptunium ATCC 15444 4290047 YP_760713.1 CDS ispDF NC_008358.1 2091646 2092782 D identified by match to protein family HMM PF01128; match to protein family HMM PF02542; match to protein family HMM TIGR00151; match to protein family HMM TIGR00453; IspD/IspF bifunctional enzyme 2091646..2092782 Hyphomonas neptunium ATCC 15444 4287822 YP_760714.1 CDS HNE_2015 NC_008358.1 2092862 2093032 D hypothetical protein 2092862..2093032 Hyphomonas neptunium ATCC 15444 4287306 YP_760715.1 CDS HNE_2016 NC_008358.1 2093046 2093831 D identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein 2093046..2093831 Hyphomonas neptunium ATCC 15444 4288210 YP_760716.1 CDS HNE_2017 NC_008358.1 2093883 2094344 D identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; CinA domain-containing protein 2093883..2094344 Hyphomonas neptunium ATCC 15444 4287808 YP_760717.1 CDS HNE_2018 NC_008358.1 2094601 2095776 D identified by match to protein family HMM PF00665; ISHne2, transposase 2094601..2095776 Hyphomonas neptunium ATCC 15444 4288238 YP_760718.1 CDS HNE_2019 NC_008358.1 2096078 2096332 R hypothetical protein complement(2096078..2096332) Hyphomonas neptunium ATCC 15444 4289901 YP_760719.1 CDS HNE_2020 NC_008358.1 2096534 2096995 R identified by match to protein family HMM PF03364; cyclase/dehydrase family protein complement(2096534..2096995) Hyphomonas neptunium ATCC 15444 4288676 YP_760720.1 CDS lipA NC_008358.1 2096999 2098054 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2096999..2098054) Hyphomonas neptunium ATCC 15444 4290342 YP_760721.1 CDS aas NC_008358.1 2098134 2099720 D identified by similarity to SP:P31119; match to protein family HMM PF00501; 2-acylglycerophosphoethanolamine acyltransferase 2098134..2099720 Hyphomonas neptunium ATCC 15444 4290541 YP_760722.1 CDS phaB NC_008358.1 2099728 2100570 R identified by match to protein family HMM PF00561; poly(3-hydroxyalkanoate) depolymerase complement(2099728..2100570) Hyphomonas neptunium ATCC 15444 4287220 YP_760723.1 CDS HNE_2024 NC_008358.1 2100593 2102281 R identified by similarity to GB:BAB78721.1; match to protein family HMM PF00561; match to protein family HMM PF07167; PHA-synthase 2 complement(2100593..2102281) Hyphomonas neptunium ATCC 15444 4288496 YP_760724.1 CDS phaD NC_008358.1 2102441 2103073 D identified by similarity to GB:BAB78722.1; match to protein family HMM PF00440; transcriptional regulator PhaD 2102441..2103073 Hyphomonas neptunium ATCC 15444 4290234 YP_760725.1 CDS HNE_2027 NC_008358.1 2104100 2104801 D identified by match to protein family HMM PF01738; dienelactone hydrolase family protein 2104100..2104801 Hyphomonas neptunium ATCC 15444 4287131 YP_760726.1 CDS phoB NC_008358.1 2104884 2105570 R identified by similarity to GB:CAA11074.1; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154; phosphate regulon transcriptional regulatory protein PhoB complement(2104884..2105570) Hyphomonas neptunium ATCC 15444 4287697 YP_760727.1 CDS phoU NC_008358.1 2105602 2106288 R identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system regulatory protein PhoU complement(2105602..2106288) Hyphomonas neptunium ATCC 15444 4290519 YP_760728.1 CDS pstB NC_008358.1 2106300 2107127 R identified by similarity to GB:BAA08137.1; match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein complement(2106300..2107127) Hyphomonas neptunium ATCC 15444 4288539 YP_760729.1 CDS pstA NC_008358.1 2107127 2108704 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease complement(2107127..2108704) Hyphomonas neptunium ATCC 15444 4290232 YP_760730.1 CDS pstC NC_008358.1 2108697 2110112 R identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease complement(2108697..2110112) Hyphomonas neptunium ATCC 15444 4287312 YP_760731.1 CDS hslV NC_008358.1 2110242 2110799 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2110242..2110799 Hyphomonas neptunium ATCC 15444 4289463 YP_760732.1 CDS hslU NC_008358.1 2110902 2112206 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2110902..2112206 Hyphomonas neptunium ATCC 15444 4289264 YP_760733.1 CDS HNE_2035 NC_008358.1 2112217 2112675 R identified by match to protein family HMM PF01638; hypothetical protein complement(2112217..2112675) Hyphomonas neptunium ATCC 15444 4288216 YP_760734.1 CDS HNE_2036 NC_008358.1 2112629 2113627 R identified by match to protein family HMM PF00294; PfkB family kinase complement(2112629..2113627) Hyphomonas neptunium ATCC 15444 4287774 YP_760735.1 CDS HNE_2037 NC_008358.1 2113775 2114653 D identified by similarity to GB:AAK25694.1; hypothetical protein 2113775..2114653 Hyphomonas neptunium ATCC 15444 4287579 YP_760736.1 CDS HNE_2038 NC_008358.1 2114650 2114997 R putative lipoprotein complement(2114650..2114997) Hyphomonas neptunium ATCC 15444 4287440 YP_760737.1 CDS HNE_2039 NC_008358.1 2115011 2116699 R identified by match to protein family HMM PF03572; peptidase family protein complement(2115011..2116699) Hyphomonas neptunium ATCC 15444 4287207 YP_760738.1 CDS nth NC_008358.1 2116762 2117526 R identified by similarity to SP:P20625; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III complement(2116762..2117526) Hyphomonas neptunium ATCC 15444 4287830 YP_760739.1 CDS HNE_2041 NC_008358.1 2117572 2118060 D hypothetical protein 2117572..2118060 Hyphomonas neptunium ATCC 15444 4288563 YP_760740.1 CDS HNE_2042 NC_008358.1 2118227 2119504 D identified by match to protein family HMM PF00067; cytochrome P450 family protein 2118227..2119504 Hyphomonas neptunium ATCC 15444 4289789 YP_760741.1 CDS HNE_2043 NC_008358.1 2119569 2120240 D identified by match to protein family HMM PF00881; nitroreductase family protein 2119569..2120240 Hyphomonas neptunium ATCC 15444 4288436 YP_760742.1 CDS HNE_2044 NC_008358.1 2120290 2120898 D hypothetical protein 2120290..2120898 Hyphomonas neptunium ATCC 15444 4289137 YP_760743.1 CDS HNE_2045 NC_008358.1 2120908 2121612 R identified by similarity to GB:AAF19809.1; match to protein family HMM PF01648; match to protein family HMM TIGR00556; putative 4'-phosphopantetheinyl transferase complement(2120908..2121612) Hyphomonas neptunium ATCC 15444 4287418 YP_760744.1 CDS scpB NC_008358.1 2121640 2122659 R identified by match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B complement(2121640..2122659) Hyphomonas neptunium ATCC 15444 4289864 YP_760745.1 CDS scpA NC_008358.1 2122646 2123479 R identified by match to protein family HMM PF02616; segregation and condensation protein A complement(2122646..2123479) Hyphomonas neptunium ATCC 15444 4288091 YP_760746.1 CDS nagZ NC_008358.1 2123476 2124510 R identified by similarity to SP:P75949; match to protein family HMM PF00933; beta-hexosaminidase complement(2123476..2124510) Hyphomonas neptunium ATCC 15444 4287158 YP_760747.1 CDS HNE_2049 NC_008358.1 2124514 2125323 R identified by similarity to GB:AAN29806.1; match to protein family HMM PF05036; sporulation repeat-containing protein complement(2124514..2125323) Hyphomonas neptunium ATCC 15444 4289666 YP_760748.1 CDS HNE_2050 NC_008358.1 2125427 2126599 R identified by match to protein family HMM PF01966; match to protein family HMM TIGR01353; putative deoxyguanosinetriphosphate triphosphohydrolase complement(2125427..2126599) Hyphomonas neptunium ATCC 15444 4287197 YP_760749.1 CDS HNE_2051 NC_008358.1 2126627 2126968 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 2126627..2126968 Hyphomonas neptunium ATCC 15444 4289116 YP_760750.1 CDS HNE_2052 NC_008358.1 2127283 2128452 D identified by similarity to GB:AAF18956.1; match to protein family HMM PF06441; epoxide hydrolase 2127283..2128452 Hyphomonas neptunium ATCC 15444 4287648 YP_760751.1 CDS HNE_2053 NC_008358.1 2128568 2129392 D hypothetical protein 2128568..2129392 Hyphomonas neptunium ATCC 15444 4287204 YP_760752.1 CDS nusB NC_008358.1 2129624 2130088 R identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951; transcription antitermination factor NusB complement(2129624..2130088) Hyphomonas neptunium ATCC 15444 4288976 YP_760753.1 CDS ribH NC_008358.1 2130088 2130516 R identified by match to protein family HMM PF00885; match to protein family HMM TIGR00114; 6,7-dimethyl-8-ribityllumazine synthase complement(2130088..2130516) Hyphomonas neptunium ATCC 15444 4288587 YP_760754.1 CDS ribAB NC_008358.1 2130518 2131645 R identified by match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; riboflavin biosynthesis protein RibA complement(2130518..2131645) Hyphomonas neptunium ATCC 15444 4290127 YP_760755.1 CDS ribE NC_008358.1 2131649 2132269 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2131649..2132269) Hyphomonas neptunium ATCC 15444 4289156 YP_760756.1 CDS HNE_2058 NC_008358.1 2132288 2132941 R identified by match to protein family HMM PF01872; match to protein family HMM TIGR00227; riboflavin biosynthesis protein RibD domain-containing protein complement(2132288..2132941) Hyphomonas neptunium ATCC 15444 4289460 YP_760757.1 CDS nrdR NC_008358.1 2132938 2133417 R identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; NrdR family transcriptional regulator complement(2132938..2133417) Hyphomonas neptunium ATCC 15444 4287295 YP_760758.1 CDS glyA NC_008358.1 2133424 2134731 R identified by match to protein family HMM PF00464; serine hydroxymethyl transferase complement(2133424..2134731) Hyphomonas neptunium ATCC 15444 4287323 YP_760759.1 CDS HNE_2061 NC_008358.1 2134770 2135348 D identified by match to protein family HMM PF05443; transcriptional regulator 2134770..2135348 Hyphomonas neptunium ATCC 15444 4289263 YP_760760.1 CDS hemA NC_008358.1 2135435 2136652 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(2135435..2136652) Hyphomonas neptunium ATCC 15444 4288224 YP_760761.1 CDS HNE_2063 NC_008358.1 2136749 2137540 R identified by match to protein family HMM PF00596; aldolase II superfamily protein complement(2136749..2137540) Hyphomonas neptunium ATCC 15444 4287457 YP_760762.1 CDS ppnK NC_008358.1 2137753 2138520 D identified by match to protein family HMM PF01513; ATP-NAD kinase 2137753..2138520 Hyphomonas neptunium ATCC 15444 4288288 YP_760763.1 CDS HNE_2065 NC_008358.1 2138600 2139220 D identified by match to protein family HMM PF01627; hypothetical protein 2138600..2139220 Hyphomonas neptunium ATCC 15444 4289323 YP_760764.1 CDS HNE_2066 NC_008358.1 2139217 2140023 R identified by match to protein family HMM PF00293; NUDIX family hydrolase complement(2139217..2140023) Hyphomonas neptunium ATCC 15444 4288299 YP_760765.1 CDS HNE_2067 NC_008358.1 2140138 2140815 D hypothetical protein 2140138..2140815 Hyphomonas neptunium ATCC 15444 4287797 YP_760766.1 CDS HNE_2068 NC_008358.1 2140812 2141975 R hypothetical protein complement(2140812..2141975) Hyphomonas neptunium ATCC 15444 4290458 YP_760767.1 CDS tig NC_008358.1 2142130 2143467 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2142130..2143467) Hyphomonas neptunium ATCC 15444 4289412 YP_760768.1 CDS HNE_2070 NC_008358.1 2144027 2145481 D identified by match to protein family HMM PF01040; hypothetical protein 2144027..2145481 Hyphomonas neptunium ATCC 15444 4287399 YP_760769.1 CDS HNE_2071 NC_008358.1 2145478 2145876 D hypothetical protein 2145478..2145876 Hyphomonas neptunium ATCC 15444 4289837 YP_760770.1 CDS algI NC_008358.1 2146064 2147533 D identified by similarity to GB:AAB09781.1; match to protein family HMM PF03062; alginate biosynthesis protein AlgI 2146064..2147533 Hyphomonas neptunium ATCC 15444 4288923 YP_760771.1 CDS HNE_2073 NC_008358.1 2147496 2148593 D hypothetical protein 2147496..2148593 Hyphomonas neptunium ATCC 15444 4287420 YP_760772.1 CDS acpP2 NC_008358.1 2148615 2148860 D identified by similarity to SP:P11830; acyl carrier protein 2148615..2148860 Hyphomonas neptunium ATCC 15444 4288038 YP_760773.1 CDS HNE_2075 NC_008358.1 2148908 2150155 D identified by match to protein family HMM PF00501; AMP-binding domain-containing protein 2148908..2150155 Hyphomonas neptunium ATCC 15444 4288338 YP_760774.1 CDS HNE_2076 NC_008358.1 2150188 2150925 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2150188..2150925 Hyphomonas neptunium ATCC 15444 4287843 YP_760775.1 CDS HNE_2077 NC_008358.1 2150926 2152224 R identified by similarity to GB:BAC18881.1; hypothetical protein complement(2150926..2152224) Hyphomonas neptunium ATCC 15444 4290349 YP_760776.1 CDS HNE_2079 NC_008358.1 2152624 2153130 D identified by match to protein family HMM PF00583; acetyltransferase 2152624..2153130 Hyphomonas neptunium ATCC 15444 4287278 YP_760777.1 CDS HNE_2080 NC_008358.1 2153133 2154575 R identified by match to protein family HMM PF01256; match to protein family HMM PF03853; match to protein family HMM TIGR00196; match to protein family HMM TIGR00197; carbohydrate kinase family protein complement(2153133..2154575) Hyphomonas neptunium ATCC 15444 4289954 YP_760778.1 CDS HNE_2081 NC_008358.1 2154583 2155122 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(2154583..2155122) Hyphomonas neptunium ATCC 15444 4290213 YP_760779.1 CDS HNE_2082 NC_008358.1 2155119 2155928 R hypothetical protein complement(2155119..2155928) Hyphomonas neptunium ATCC 15444 4288455 YP_760780.1 CDS glnB NC_008358.1 2156180 2156518 D identified by similarity to SP:P05826; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2156180..2156518 Hyphomonas neptunium ATCC 15444 4287917 YP_760781.1 CDS glnA NC_008358.1 2156598 2158001 D identified by similarity to SP:P05457; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 2156598..2158001 Hyphomonas neptunium ATCC 15444 4288747 YP_760782.1 CDS HNE_2085 NC_008358.1 2158088 2159011 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 2158088..2159011 Hyphomonas neptunium ATCC 15444 4287304 YP_760783.1 CDS clpX NC_008358.1 2159071 2160333 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2159071..2160333) Hyphomonas neptunium ATCC 15444 4288591 YP_760784.1 CDS clpP NC_008358.1 2160460 2161083 R identified by similarity to SP:P19245; match to protein family HMM PF00574; ATP-dependent Clp protease, proteolytic subunit ClpP complement(2160460..2161083) Hyphomonas neptunium ATCC 15444 4287942 YP_760785.1 CDS HNE_2088 NC_008358.1 2161202 2162095 R identified by match to protein family HMM PF00561; hypothetical protein complement(2161202..2162095) Hyphomonas neptunium ATCC 15444 4290128 YP_760786.1 CDS HNE_2089 NC_008358.1 2162105 2163211 R identified by match to protein family HMM PF00561; hypothetical protein complement(2162105..2163211) Hyphomonas neptunium ATCC 15444 4289402 YP_760787.1 CDS HNE_2090 NC_008358.1 2163407 2165143 D identified by match to protein family HMM PF01546; match to protein family HMM PF04389; M28 family peptidase 2163407..2165143 Hyphomonas neptunium ATCC 15444 4287504 YP_760788.1 CDS HNE_2091 NC_008358.1 2165194 2165982 D hypothetical protein 2165194..2165982 Hyphomonas neptunium ATCC 15444 4288073 YP_760789.1 CDS HNE_2092 NC_008358.1 2165979 2166911 R identified by similarity to SP:P33695; match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(2165979..2166911) Hyphomonas neptunium ATCC 15444 4287280 YP_760790.1 CDS HNE_2093 NC_008358.1 2167109 2168263 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase complement(2167109..2168263) Hyphomonas neptunium ATCC 15444 4288095 YP_760791.1 CDS HNE_2094 NC_008358.1 2168293 2169486 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(2168293..2169486) Hyphomonas neptunium ATCC 15444 4288954 YP_760792.1 CDS HNE_2095 NC_008358.1 2169615 2170610 R identified by similarity to SP:P29935; match to protein family HMM PF02277; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(2169615..2170610) Hyphomonas neptunium ATCC 15444 4289383 YP_760793.1 CDS HNE_2096 NC_008358.1 2170750 2170947 D identified by similarity to GB:AAK23289.1; match to protein family HMM PF06945; hypothetical protein 2170750..2170947 Hyphomonas neptunium ATCC 15444 4289823 YP_760794.1 CDS HNE_2097 NC_008358.1 2170953 2171495 D identified by similarity to GB:AAK23288.1; match to protein family HMM TIGR02281; hypothetical protein 2170953..2171495 Hyphomonas neptunium ATCC 15444 4289471 YP_760795.1 CDS pyk NC_008358.1 2171482 2172906 R identified by similarity to SP:P70789; match to protein family HMM PF00224; match to protein family HMM TIGR01064; pyruvate kinase complement(2171482..2172906) Hyphomonas neptunium ATCC 15444 4289055 YP_760796.1 CDS HNE_2099 NC_008358.1 2173180 2174916 D identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2173180..2174916 Hyphomonas neptunium ATCC 15444 4287065 YP_760797.1 CDS HNE_2100 NC_008358.1 2174913 2177555 R identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082; putative methionine synthase complement(2174913..2177555) Hyphomonas neptunium ATCC 15444 4287741 YP_760798.1 CDS HNE_2101 NC_008358.1 2177552 2177965 R hypothetical protein complement(2177552..2177965) Hyphomonas neptunium ATCC 15444 4289365 YP_760799.1 CDS HNE_2102 NC_008358.1 2177977 2179035 R identified by similarity to SP:O33465; match to protein family HMM PF02574; putative metionine synthase, homocysteine S-methyltransferase subunit complement(2177977..2179035) Hyphomonas neptunium ATCC 15444 4288312 YP_760800.1 CDS metF NC_008358.1 2179039 2179953 R identified by match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase complement(2179039..2179953) Hyphomonas neptunium ATCC 15444 4288382 YP_760801.1 CDS HNE_2104 NC_008358.1 2179950 2180927 R identified by match to protein family HMM PF01022; match to protein family HMM PF01209; match to protein family HMM PF05175; ArsR family transcriptional regulator complement(2179950..2180927) Hyphomonas neptunium ATCC 15444 4289075 YP_760802.1 CDS HNE_2105 NC_008358.1 2181226 2181993 D identified by match to protein family HMM PF04333; putative lipoprotein VacJ 2181226..2181993 Hyphomonas neptunium ATCC 15444 4290533 YP_760803.1 CDS HNE_2106 NC_008358.1 2182025 2182651 D identified by match to protein family HMM PF05494; Ttg2 family toluene tolerance protein 2182025..2182651 Hyphomonas neptunium ATCC 15444 4289523 YP_760804.1 CDS HNE_2107 NC_008358.1 2182712 2184340 R identified by similarity to GB:AAD51362.2; match to protein family HMM PF03806; p-aminobenzoyl-glutamate transporter family permease complement(2182712..2184340) Hyphomonas neptunium ATCC 15444 4289678 YP_760805.1 CDS HNE_2108 NC_008358.1 2184688 2185614 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne4, transposase 2184688..2185614 Hyphomonas neptunium ATCC 15444 4290099 YP_760806.1 CDS HNE_2109 NC_008358.1 2185717 2186220 R hypothetical protein complement(2185717..2186220) Hyphomonas neptunium ATCC 15444 4288493 YP_760807.1 CDS HNE_2110 NC_008358.1 2186411 2187814 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein complement(2186411..2187814) Hyphomonas neptunium ATCC 15444 4290366 YP_760808.1 CDS HNE_2111 NC_008358.1 2187811 2191011 R identified by similarity to GB:CAA67864.1; match to protein family HMM PF00873; match to protein family HMM TIGR00915; hydrophobe/amphiphile efflux-1 family protein complement(2187811..2191011) Hyphomonas neptunium ATCC 15444 4290276 YP_760809.1 CDS HNE_2112 NC_008358.1 2191076 2192266 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2191076..2192266) Hyphomonas neptunium ATCC 15444 4287492 YP_760810.1 CDS HNE_2113 NC_008358.1 2192402 2192974 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2192402..2192974 Hyphomonas neptunium ATCC 15444 4287159 YP_760811.1 CDS HNE_2114 NC_008358.1 2193080 2194291 D hypothetical protein 2193080..2194291 Hyphomonas neptunium ATCC 15444 4287023 YP_760812.1 CDS katG NC_008358.1 2194360 2196531 R identified by match to protein family HMM PF00141; match to protein family HMM TIGR00198; catalase/peroxidase HPI complement(2194360..2196531) Hyphomonas neptunium ATCC 15444 4289980 YP_760813.1 CDS HNE_2116 NC_008358.1 2196948 2199380 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; TonB-dependent receptor 2196948..2199380 Hyphomonas neptunium ATCC 15444 4287875 YP_760814.1 CDS HNE_2117 NC_008358.1 2199398 2200078 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 2199398..2200078 Hyphomonas neptunium ATCC 15444 4289891 YP_760815.1 CDS HNE_2118 NC_008358.1 2200075 2201172 D identified by similarity to SP:Q9LRS0; match to protein family HMM PF01070; FMN-dependent alpha-hydroxy acid dehydrogenase family protein 2200075..2201172 Hyphomonas neptunium ATCC 15444 4287270 YP_760816.1 CDS HNE_2119 NC_008358.1 2201169 2202269 R identified by similarity to SP:P39849; match to protein family HMM PF00107; aryl-alcohol dehydrogenase complement(2201169..2202269) Hyphomonas neptunium ATCC 15444 4288973 YP_760817.1 CDS HNE_2120 NC_008358.1 2202382 2203026 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2202382..2203026) Hyphomonas neptunium ATCC 15444 4289684 YP_760818.1 CDS HNE_2121 NC_008358.1 2203269 2205605 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(2203269..2205605) Hyphomonas neptunium ATCC 15444 4287506 YP_760819.1 CDS HNE_2122 NC_008358.1 2206157 2206315 D hypothetical protein 2206157..2206315 Hyphomonas neptunium ATCC 15444 4288075 YP_760820.1 CDS HNE_2123 NC_008358.1 2206312 2207241 R identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724; allophanate hydrolase subunit 2 complement(2206312..2207241) Hyphomonas neptunium ATCC 15444 4289312 YP_760821.1 CDS HNE_2124 NC_008358.1 2207246 2207875 R identified by match to protein family HMM PF02682; allophanate hydrolase subunit 1 complement(2207246..2207875) Hyphomonas neptunium ATCC 15444 4289398 YP_760822.1 CDS HNE_2125 NC_008358.1 2207872 2208624 R identified by match to protein family HMM PF03746; LamB/YcsF family protein complement(2207872..2208624) Hyphomonas neptunium ATCC 15444 4287526 YP_760823.1 CDS HNE_2126 NC_008358.1 2208621 2209835 R identified by match to protein family HMM PF01566; Mn2+/Fe2+ transporter complement(2208621..2209835) Hyphomonas neptunium ATCC 15444 4290055 YP_760824.1 CDS HNE_2127 NC_008358.1 2209832 2210842 R identified by similarity to GB:CAD75571.1; hypothetical protein complement(2209832..2210842) Hyphomonas neptunium ATCC 15444 4287484 YP_760825.1 CDS HNE_2128 NC_008358.1 2211196 2213763 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2211196..2213763 Hyphomonas neptunium ATCC 15444 4288724 YP_760826.1 CDS HNE_2129 NC_008358.1 2213774 2215222 D identified by similarity to GB:BAC09073.1; hypothetical protein 2213774..2215222 Hyphomonas neptunium ATCC 15444 4289631 YP_760827.1 CDS HNE_2130 NC_008358.1 2215286 2215963 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2215286..2215963 Hyphomonas neptunium ATCC 15444 4288134 YP_760828.1 CDS HNE_2131 NC_008358.1 2216085 2216861 D identified by match to protein family HMM PF01614; IclR family transcriptional regulator 2216085..2216861 Hyphomonas neptunium ATCC 15444 4287693 YP_760829.1 CDS HNE_2132 NC_008358.1 2216858 2217187 R identified by match to protein family HMM PF05336; hypothetical protein complement(2216858..2217187) Hyphomonas neptunium ATCC 15444 4288691 YP_760830.1 CDS HNE_2133 NC_008358.1 2217511 2218815 D identified by match to protein family HMM PF01188; mandelate racemase/muconate lactonizing enzyme family protein 2217511..2218815 Hyphomonas neptunium ATCC 15444 4287538 YP_760831.1 CDS HNE_2134 NC_008358.1 2218812 2219801 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 2218812..2219801 Hyphomonas neptunium ATCC 15444 4287363 YP_760832.1 CDS HNE_2135 NC_008358.1 2219804 2220643 D identified by match to protein family HMM PF04909; amidohydrolase family protein 2219804..2220643 Hyphomonas neptunium ATCC 15444 4289469 YP_760833.1 CDS HNE_2136 NC_008358.1 2220645 2221382 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2220645..2221382 Hyphomonas neptunium ATCC 15444 4290521 YP_760834.1 CDS HNE_2137 NC_008358.1 2221394 2222236 D identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein 2221394..2222236 Hyphomonas neptunium ATCC 15444 4287495 YP_760835.1 CDS HNE_2138 NC_008358.1 2222440 2223036 D identified by match to protein family HMM PF05494; Ttg2 family toluene tolerance protein 2222440..2223036 Hyphomonas neptunium ATCC 15444 4289246 YP_760836.1 CDS HNE_2139 NC_008358.1 2223118 2223819 R hypothetical protein complement(2223118..2223819) Hyphomonas neptunium ATCC 15444 4289291 YP_760837.1 CDS HNE_2140 NC_008358.1 2223824 2225575 R hypothetical protein complement(2223824..2225575) Hyphomonas neptunium ATCC 15444 4288810 YP_760838.1 CDS HNE_2141 NC_008358.1 2225572 2226270 R putative lipoprotein complement(2225572..2226270) Hyphomonas neptunium ATCC 15444 4289588 YP_760839.1 CDS HNE_2142 NC_008358.1 2226270 2228072 R identified by match to protein family HMM PF05658; Hep_Hag repeat-containing protein complement(2226270..2228072) Hyphomonas neptunium ATCC 15444 4288700 YP_760840.1 CDS HNE_2143 NC_008358.1 2228151 2228876 D identified by match to protein family HMM PF07638; match to protein family HMM TIGR02937; ECF sigma factor family protein 2228151..2228876 Hyphomonas neptunium ATCC 15444 4290144 YP_760841.1 CDS HNE_2144 NC_008358.1 2228827 2231238 R identified by match to protein family HMM PF00069; match to protein family HMM PF00515; match to protein family HMM PF07721; serine/threonine protein kinase complement(2228827..2231238) Hyphomonas neptunium ATCC 15444 4287692 YP_760842.1 CDS HNE_2145 NC_008358.1 2231426 2231965 D putative lipoprotein 2231426..2231965 Hyphomonas neptunium ATCC 15444 4290284 YP_760843.1 CDS ptrB NC_008358.1 2231971 2234148 R identified by match to protein family HMM PF00326; match to protein family HMM PF02897; match to protein family HMM TIGR01409; protease II complement(2231971..2234148) Hyphomonas neptunium ATCC 15444 4287241 YP_760844.1 CDS HNE_2147 NC_008358.1 2234601 2235224 D identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein 2234601..2235224 Hyphomonas neptunium ATCC 15444 4287355 YP_760845.1 CDS dprA NC_008358.1 2235221 2236336 D identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA protecting protein DprA 2235221..2236336 Hyphomonas neptunium ATCC 15444 4289589 YP_760846.1 CDS HNE_2149 NC_008358.1 2236584 2238794 D hypothetical protein 2236584..2238794 Hyphomonas neptunium ATCC 15444 4288948 YP_760847.1 CDS HNE_2150 NC_008358.1 2238936 2240183 D identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein 2238936..2240183 Hyphomonas neptunium ATCC 15444 4287128 YP_760848.1 CDS pdxA NC_008358.1 2240235 2241242 D identified by match to protein family HMM PF04166; 4-hydroxythreonine-4-phosphate dehydrogenase 2240235..2241242 Hyphomonas neptunium ATCC 15444 4289717 YP_760849.1 CDS ksgA NC_008358.1 2241239 2242096 D identified by match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 2241239..2242096 Hyphomonas neptunium ATCC 15444 4288842 YP_760850.1 CDS HNE_2153 NC_008358.1 2242093 2242746 R identified by match to protein family HMM PF00625; guanylate kinase complement(2242093..2242746) Hyphomonas neptunium ATCC 15444 4289885 YP_760851.1 CDS HNE_2154 NC_008358.1 2242736 2243620 R identified by similarity to GB:AAN29406.1; match to protein family HMM PF03755; match to protein family HMM TIGR00255; hypothetical protein complement(2242736..2243620) Hyphomonas neptunium ATCC 15444 4288760 YP_760852.1 CDS HNE_2155 NC_008358.1 2243620 2244657 R identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247; hypothetical protein complement(2243620..2244657) Hyphomonas neptunium ATCC 15444 4287488 YP_760853.1 CDS fabF NC_008358.1 2244883 2246169 R identified by match to protein family HMM PF00109; match to protein family HMM PF02801; 3-oxoacyl-ACP synthase complement(2244883..2246169) Hyphomonas neptunium ATCC 15444 4288256 YP_760854.1 CDS acpP NC_008358.1 2246184 2246417 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2246184..2246417) Hyphomonas neptunium ATCC 15444 4287828 YP_760855.1 CDS fabG NC_008358.1 2246530 2247267 R identified by match to protein family HMM PF00106; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase complement(2246530..2247267) Hyphomonas neptunium ATCC 15444 4287620 YP_760856.1 CDS HNE_2159 NC_008358.1 2247271 2247429 R hypothetical protein complement(2247271..2247429) Hyphomonas neptunium ATCC 15444 4288702 YP_760857.1 CDS fabD NC_008358.1 2247432 2248382 R identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase complement(2247432..2248382) Hyphomonas neptunium ATCC 15444 4289550 YP_760858.1 CDS rpsF NC_008358.1 2248596 2248934 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 2248596..2248934 Hyphomonas neptunium ATCC 15444 4290006 YP_760859.1 CDS rpsR NC_008358.1 2248955 2249212 D identified by match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 2248955..2249212 Hyphomonas neptunium ATCC 15444 4288789 YP_760860.1 CDS rplI NC_008358.1 2249225 2249809 D identified by match to protein family HMM PF01281; match to protein family HMM PF03948; match to protein family HMM TIGR00158; 50S ribosomal protein L9 2249225..2249809 Hyphomonas neptunium ATCC 15444 4290409 YP_760861.1 CDS dnaB NC_008358.1 2249981 2251471 D identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase 2249981..2251471 Hyphomonas neptunium ATCC 15444 4288226 YP_760862.1 CDS HNE_2165 NC_008358.1 2251474 2251959 R identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; CinA domain-containing protein complement(2251474..2251959) Hyphomonas neptunium ATCC 15444 4287982 YP_760863.1 CDS HNE_2166 NC_008358.1 2251987 2252895 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(2251987..2252895) Hyphomonas neptunium ATCC 15444 4288017 YP_760864.1 CDS HNE_2167 NC_008358.1 2253044 2254348 D identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein 2253044..2254348 Hyphomonas neptunium ATCC 15444 4287076 YP_760865.1 CDS HNE_2168 NC_008358.1 2254361 2255350 D hypothetical protein 2254361..2255350 Hyphomonas neptunium ATCC 15444 4287665 YP_760866.1 CDS cobQ NC_008358.1 2255386 2256873 R identified by match to protein family HMM PF01656; match to protein family HMM PF07685; match to protein family HMM TIGR00313; cobyric acid synthase CobQ complement(2255386..2256873) Hyphomonas neptunium ATCC 15444 4289916 YP_760867.1 CDS HNE_2170 NC_008358.1 2256971 2257369 R identified by match to protein family HMM PF07845; hypothetical protein complement(2256971..2257369) Hyphomonas neptunium ATCC 15444 4287296 YP_760868.1 CDS HNE_2171 NC_008358.1 2257505 2257642 R hypothetical protein complement(2257505..2257642) Hyphomonas neptunium ATCC 15444 4287104 YP_760869.1 CDS HNE_2172 NC_008358.1 2257608 2257790 R hypothetical protein complement(2257608..2257790) Hyphomonas neptunium ATCC 15444 4289422 YP_760870.1 CDS HNE_2173 NC_008358.1 2257787 2258923 R identified by similarity to GB:AAK24889.1; match to protein family HMM PF03929; PepSY-associated TM helix domain-containing protein complement(2257787..2258923) Hyphomonas neptunium ATCC 15444 4288019 YP_760871.1 CDS HNE_2174 NC_008358.1 2258935 2261115 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; TonB-dependent receptor family protein complement(2258935..2261115) Hyphomonas neptunium ATCC 15444 4288380 YP_760872.1 CDS mmsA2 NC_008358.1 2262534 2264033 R identified by similarity to GB:AAA99190.1; match to protein family HMM PF00171; match to protein family HMM TIGR01722; methylmalonate-semialdehyde dehydrogenase complement(2262534..2264033) Hyphomonas neptunium ATCC 15444 4287300 YP_760873.1 CDS HNE_2177 NC_008358.1 2264088 2265698 R uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; putative symporter YidK complement(2264088..2265698) Hyphomonas neptunium ATCC 15444 4289129 YP_760874.1 CDS HNE_2178 NC_008358.1 2265873 2267390 D identified by match to protein family HMM PF00884; sulfatase family protein 2265873..2267390 Hyphomonas neptunium ATCC 15444 4289287 YP_760875.1 CDS HNE_2179 NC_008358.1 2267474 2268934 R identified by similarity to GB:AAS06170.1; putative lipoprotein complement(2267474..2268934) Hyphomonas neptunium ATCC 15444 4288193 YP_760876.1 CDS HNE_2180 NC_008358.1 2269081 2271357 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(2269081..2271357) Hyphomonas neptunium ATCC 15444 4289692 YP_760877.1 CDS HNE_2181 NC_008358.1 2271561 2272391 D identified by match to protein family HMM PF01380; SIS domain-containing protein 2271561..2272391 Hyphomonas neptunium ATCC 15444 4288938 YP_760878.1 CDS iolC NC_008358.1 2272534 2274447 D identified by similarity to SP:P42414; match to protein family HMM PF00294; kinase IolC 2272534..2274447 Hyphomonas neptunium ATCC 15444 4287881 YP_760879.1 CDS iolD NC_008358.1 2274466 2276310 D identified by similarity to GB:AAK23280.1; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; thiamine pyrophosphate-dependent enzyme IolD 2274466..2276310 Hyphomonas neptunium ATCC 15444 4287818 YP_760880.1 CDS iolE NC_008358.1 2276323 2277231 D identified by similarity to SP:P42416; match to protein family HMM PF01261; 2-keto-myo-inositol dehydratase 2276323..2277231 Hyphomonas neptunium ATCC 15444 4287234 YP_760881.1 CDS iolB NC_008358.1 2277224 2278024 D identified by similarity to SP:P42413; match to protein family HMM PF06845; myo-inositol catabolism protein IolB 2277224..2278024 Hyphomonas neptunium ATCC 15444 4288423 YP_760882.1 CDS HNE_2186 NC_008358.1 2278092 2279216 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; NAD-binding oxidoreductase 2278092..2279216 Hyphomonas neptunium ATCC 15444 4289810 YP_760883.1 CDS HNE_2187 NC_008358.1 2280613 2282400 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; putative outer membrane efflux protein 2280613..2282400 Hyphomonas neptunium ATCC 15444 4288654 YP_760884.1 CDS HNE_2188 NC_008358.1 2282460 2283143 D identified by similarity to SP:O31395; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR01387; DNA-binding heavy metal response regulator 2282460..2283143 Hyphomonas neptunium ATCC 15444 4290339 YP_760885.1 CDS HNE_2189 NC_008358.1 2283140 2284495 D identified by similarity to SP:P77485; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; match to protein family HMM TIGR01386; heavy metal sensor histidine kinase 2283140..2284495 Hyphomonas neptunium ATCC 15444 4289151 YP_760886.1 CDS HNE_2190 NC_008358.1 2284598 2287774 R identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein complement(2284598..2287774) Hyphomonas neptunium ATCC 15444 4289237 YP_760887.1 CDS HNE_2191 NC_008358.1 2287828 2288928 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2287828..2288928) Hyphomonas neptunium ATCC 15444 4288457 YP_760888.1 CDS HNE_2192 NC_008358.1 2289126 2290040 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(2289126..2290040) Hyphomonas neptunium ATCC 15444 4288041 YP_760889.1 CDS HNE_2193 NC_008358.1 2290265 2290729 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 2290265..2290729 Hyphomonas neptunium ATCC 15444 4289363 YP_760890.1 CDS HNE_2194 NC_008358.1 2290726 2291541 D identified by similarity to GB:BAC90391.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; hypothetical protein 2290726..2291541 Hyphomonas neptunium ATCC 15444 4288766 YP_760891.1 CDS HNE_2195 NC_008358.1 2291562 2292008 R identified by match to protein family HMM PF07681; DoxX family protein complement(2291562..2292008) Hyphomonas neptunium ATCC 15444 4287899 YP_760892.1 CDS HNE_2196 NC_008358.1 2292141 2293235 R identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409; short chain dehydrogenase/reductase family oxidoreductase complement(2292141..2293235) Hyphomonas neptunium ATCC 15444 4288891 YP_760893.1 CDS HNE_2197 NC_008358.1 2293336 2294025 R identified by similarity to GB:CAD47159.1; match to protein family HMM PF03692; hypothetical protein complement(2293336..2294025) Hyphomonas neptunium ATCC 15444 4289768 YP_760894.1 CDS HNE_2198 NC_008358.1 2294035 2294508 R identified by similarity to GB:CAD17738.1; hypothetical protein complement(2294035..2294508) Hyphomonas neptunium ATCC 15444 4287544 YP_760895.1 CDS HNE_2199 NC_008358.1 2294646 2295569 R identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator complement(2294646..2295569) Hyphomonas neptunium ATCC 15444 4288039 YP_760896.1 CDS HNE_2200 NC_008358.1 2296179 2296637 D identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799; putative isoquinoline 1-oxidoreductase subunit alpha 2296179..2296637 Hyphomonas neptunium ATCC 15444 4290354 YP_760897.1 CDS HNE_2201 NC_008358.1 2296615 2297337 D hypothetical protein 2296615..2297337 Hyphomonas neptunium ATCC 15444 4289041 YP_760898.1 CDS HNE_2202 NC_008358.1 2297397 2299526 D identified by similarity to SP:Q51698; match to protein family HMM PF01315; putative isoquinoline 1-oxidoreductase subunit beta 2297397..2299526 Hyphomonas neptunium ATCC 15444 4288415 YP_760899.1 CDS HNE_2203 NC_008358.1 2299572 2300150 R sulfatase complement(2299572..2300150) Hyphomonas neptunium ATCC 15444 4287652 YP_760900.1 CDS HNE_2204 NC_008358.1 2300264 2301304 R identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase complement(2300264..2301304) Hyphomonas neptunium ATCC 15444 4287877 YP_760901.1 CDS HNE_2205 NC_008358.1 2301362 2302186 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF07993; short chain dehydrogenase/reductase family oxidoreductase complement(2301362..2302186) Hyphomonas neptunium ATCC 15444 4289128 YP_760902.1 CDS HNE_2206 NC_008358.1 2302532 2303299 D identified by match to protein family HMM PF00392; match to protein family HMM PF07729; GntR family transcriptional regulator 2302532..2303299 Hyphomonas neptunium ATCC 15444 4287075 YP_760903.1 CDS HNE_2207 NC_008358.1 2303327 2304622 R identified by match to protein family HMM PF00067; cytochrome P450 family protein complement(2303327..2304622) Hyphomonas neptunium ATCC 15444 4288009 YP_760904.1 CDS HNE_2208 NC_008358.1 2304653 2306332 R identified by match to protein family HMM PF01494; hypothetical protein complement(2304653..2306332) Hyphomonas neptunium ATCC 15444 4290275 YP_760905.1 CDS HNE_2209 NC_008358.1 2306592 2307290 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2306592..2307290) Hyphomonas neptunium ATCC 15444 4290359 YP_760906.1 CDS HNE_2210 NC_008358.1 2307522 2309858 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2307522..2309858 Hyphomonas neptunium ATCC 15444 4288445 YP_760907.1 CDS HNE_2211 NC_008358.1 2309894 2311567 D identified by match to protein family HMM PF00884; sulfatase family protein 2309894..2311567 Hyphomonas neptunium ATCC 15444 4289519 YP_760908.1 CDS HNE_2212 NC_008358.1 2311633 2312724 D identified by similarity to GB:AAS04729.1; hypothetical protein 2311633..2312724 Hyphomonas neptunium ATCC 15444 4288198 YP_760909.1 CDS HNE_2213 NC_008358.1 2312775 2314349 R thiamine-pyrophosphate requiring enzyme; hypothetical protein complement(2312775..2314349) Hyphomonas neptunium ATCC 15444 4289043 YP_760910.1 CDS HNE_2214 NC_008358.1 2314436 2314864 R identified by similarity to GB:AAM35763.1; hypothetical protein complement(2314436..2314864) Hyphomonas neptunium ATCC 15444 4287099 YP_760911.1 CDS HNE_2215 NC_008358.1 2314889 2316220 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(2314889..2316220) Hyphomonas neptunium ATCC 15444 4290307 YP_760912.1 CDS HNE_2216 NC_008358.1 2316492 2317430 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2316492..2317430 Hyphomonas neptunium ATCC 15444 4290406 YP_760913.1 CDS HNE_2217 NC_008358.1 2317501 2318346 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein complement(2317501..2318346) Hyphomonas neptunium ATCC 15444 4287817 YP_760914.1 CDS HNE_2218 NC_008358.1 2318411 2319058 R identified by similarity to SP:P47233; match to protein family HMM PF00903; putative biphenyl-2,3-diol 1,2-dioxygenase complement(2318411..2319058) Hyphomonas neptunium ATCC 15444 4288899 YP_760915.1 CDS HNE_2219 NC_008358.1 2319423 2320886 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 2319423..2320886 Hyphomonas neptunium ATCC 15444 4289105 YP_760916.1 CDS HNE_2220 NC_008358.1 2321028 2321780 D identified by match to protein family HMM PF00596; class II aldolase/adducin domain-containing protein 2321028..2321780 Hyphomonas neptunium ATCC 15444 4290343 YP_760917.1 CDS HNE_2221 NC_008358.1 2321796 2322728 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(2321796..2322728) Hyphomonas neptunium ATCC 15444 4288811 YP_760918.1 CDS HNE_2222 NC_008358.1 2322946 2323839 R identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator complement(2322946..2323839) Hyphomonas neptunium ATCC 15444 4289745 YP_760919.1 CDS HNE_2223 NC_008358.1 2324003 2325319 D identified by match to protein family HMM PF07690; major facilitator family transporter 2324003..2325319 Hyphomonas neptunium ATCC 15444 4288307 YP_760920.1 CDS HNE_2224 NC_008358.1 2325531 2326322 D identified by match to protein family HMM PF06629; MipA family protein 2325531..2326322 Hyphomonas neptunium ATCC 15444 4288812 YP_760921.1 CDS HNE_2225 NC_008358.1 2326743 2327714 R identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase complement(2326743..2327714) Hyphomonas neptunium ATCC 15444 4287066 YP_760922.1 CDS HNE_2226 NC_008358.1 2327850 2328731 D identified by match to protein family HMM PF00165; match to protein family HMM PF06719; AraC family transcriptional regulator 2327850..2328731 Hyphomonas neptunium ATCC 15444 4290066 YP_760923.1 CDS HNE_2227 NC_008358.1 2328883 2329374 R hypothetical protein complement(2328883..2329374) Hyphomonas neptunium ATCC 15444 4287523 YP_760924.1 CDS HNE_2228 NC_008358.1 2329387 2330280 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(2329387..2330280) Hyphomonas neptunium ATCC 15444 4289904 YP_760925.1 CDS HNE_2229 NC_008358.1 2330384 2331193 D identified by similarity to GB:CAE27922.1; putative transcriptional regulator 2330384..2331193 Hyphomonas neptunium ATCC 15444 4288389 YP_760926.1 CDS cobA NC_008358.1 2331874 2332653 R identified by match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase complement(2331874..2332653) Hyphomonas neptunium ATCC 15444 4290110 YP_760927.1 CDS HNE_2231 NC_008358.1 2332650 2333861 R identified by similarity to GB:AAK22594.1; putative lipoprotein complement(2332650..2333861) Hyphomonas neptunium ATCC 15444 4288984 YP_760928.1 CDS HNE_2232 NC_008358.1 2334064 2335206 R identified by similarity to SP:P38043; putative nitrate transporter complement(2334064..2335206) Hyphomonas neptunium ATCC 15444 4287260 YP_760929.1 CDS nasT NC_008358.1 2335203 2335949 R identified by similarity to PIR:S70540; match to protein family HMM PF00072; match to protein family HMM PF03861; response regulator NasT complement(2335203..2335949) Hyphomonas neptunium ATCC 15444 4288683 YP_760930.1 CDS nirB NC_008358.1 2336181 2338652 D identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374; nitrite reductase [NAD(P)H] large subunit 2336181..2338652 Hyphomonas neptunium ATCC 15444 4290357 YP_760931.1 CDS nirD NC_008358.1 2338649 2338996 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378; nitrite reductase [NAD(P)H] small subunit 2338649..2338996 Hyphomonas neptunium ATCC 15444 4287344 YP_760932.1 CDS fnt NC_008358.1 2339011 2339853 D identified by match to protein family HMM PF01226; formate/nitrite transporter 2339011..2339853 Hyphomonas neptunium ATCC 15444 4289559 YP_760933.1 CDS HNE_2237 NC_008358.1 2339859 2341583 D identified by match to protein family HMM PF00069; match to protein family HMM PF00481; carbohydrate kinase 2339859..2341583 Hyphomonas neptunium ATCC 15444 4288014 YP_760934.1 CDS HNE_2239 NC_008358.1 2342080 2342184 R hypothetical protein complement(2342080..2342184) Hyphomonas neptunium ATCC 15444 4288001 YP_760935.1 CDS HNE_2240 NC_008358.1 2342174 2342869 R hypothetical protein complement(2342174..2342869) Hyphomonas neptunium ATCC 15444 4287070 YP_760936.1 CDS HNE_2241 NC_008358.1 2342950 2344371 R identified by match to protein family HMM PF02706; putative chain length determinant protein complement(2342950..2344371) Hyphomonas neptunium ATCC 15444 4288869 YP_760937.1 CDS HNE_2242 NC_008358.1 2344554 2345501 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 2344554..2345501 Hyphomonas neptunium ATCC 15444 4288557 YP_760938.1 CDS HNE_2243 NC_008358.1 2345591 2346727 D identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; aminotransferase 2345591..2346727 Hyphomonas neptunium ATCC 15444 4288061 YP_760939.1 CDS pepA NC_008358.1 2346810 2348351 R identified by similarity to SP:P27888; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase complement(2346810..2348351) Hyphomonas neptunium ATCC 15444 4289283 YP_760940.1 CDS HNE_2245 NC_008358.1 2348467 2349099 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; HAD family hydrolase complement(2348467..2349099) Hyphomonas neptunium ATCC 15444 4288128 YP_760941.1 CDS thiG NC_008358.1 2349106 2349903 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(2349106..2349903) Hyphomonas neptunium ATCC 15444 4290510 YP_760942.1 CDS thiS NC_008358.1 2350028 2350240 R identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS complement(2350028..2350240) Hyphomonas neptunium ATCC 15444 4288764 YP_760943.1 CDS aroQ NC_008358.1 2350304 2350747 D identified by match to protein family HMM PF01220; match to protein family HMM TIGR01088; 3-dehydroquinate dehydratase 2350304..2350747 Hyphomonas neptunium ATCC 15444 4288088 YP_760944.1 CDS accB NC_008358.1 2350750 2351220 D identified by match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase biotin carboxyl carrier protein 2350750..2351220 Hyphomonas neptunium ATCC 15444 4289350 YP_760945.1 CDS accC NC_008358.1 2351222 2352595 D identified by match to protein family HMM PF00289; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase biotin carboxylase 2351222..2352595 Hyphomonas neptunium ATCC 15444 4289503 YP_760946.1 CDS aat NC_008358.1 2352653 2353429 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2352653..2353429 Hyphomonas neptunium ATCC 15444 4287680 YP_760947.1 CDS HNE_2252 NC_008358.1 2353273 2353827 R hypothetical protein complement(2353273..2353827) Hyphomonas neptunium ATCC 15444 4289017 YP_760948.1 CDS HNE_2253 NC_008358.1 2353824 2354381 R identified by match to protein family HMM PF02470; hypothetical protein complement(2353824..2354381) Hyphomonas neptunium ATCC 15444 4287162 YP_760949.1 CDS HNE_2254 NC_008358.1 2354374 2354766 R identified by match to protein family HMM PF05071; putative NADH:ubiquinone oxidoreductase complement(2354374..2354766) Hyphomonas neptunium ATCC 15444 4288012 YP_760950.1 CDS HNE_2255 NC_008358.1 2354987 2357239 D ribonucleoside reductase-like protein 2354987..2357239 Hyphomonas neptunium ATCC 15444 4287545 YP_760951.1 CDS HNE_2256 NC_008358.1 2357402 2358139 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 2357402..2358139 Hyphomonas neptunium ATCC 15444 4289822 YP_760952.1 CDS aspS NC_008358.1 2358217 2360046 R identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459; aspartyl-tRNA synthetase complement(2358217..2360046) Hyphomonas neptunium ATCC 15444 4287470 YP_760953.1 CDS rnd NC_008358.1 2360145 2361311 D identified by match to protein family HMM PF00570; match to protein family HMM PF01612; match to protein family HMM TIGR01388; ribonuclease D 2360145..2361311 Hyphomonas neptunium ATCC 15444 4288655 YP_760954.1 CDS HNE_2259 NC_008358.1 2361319 2362806 R identified by match to protein family HMM PF02541; Ppx/GppA family phosphatase complement(2361319..2362806) Hyphomonas neptunium ATCC 15444 4290340 YP_760955.1 CDS ppk NC_008358.1 2362803 2364980 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2362803..2364980) Hyphomonas neptunium ATCC 15444 4288306 YP_760956.1 CDS HNE_2261 NC_008358.1 2365009 2365740 R identified by similarity to GB:BAB53627.1; hypothetical protein complement(2365009..2365740) Hyphomonas neptunium ATCC 15444 4290316 YP_760957.1 CDS HNE_2262 NC_008358.1 2365737 2366756 R hypothetical protein complement(2365737..2366756) Hyphomonas neptunium ATCC 15444 4289434 YP_760958.1 CDS purM NC_008358.1 2366903 2367931 D identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase 2366903..2367931 Hyphomonas neptunium ATCC 15444 4287876 YP_760959.1 CDS purN NC_008358.1 2367928 2368512 D identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase 2367928..2368512 Hyphomonas neptunium ATCC 15444 4289307 YP_760960.1 CDS HNE_2265 NC_008358.1 2368620 2368934 D identified by similarity to GB:AAN30499.1; hypothetical protein 2368620..2368934 Hyphomonas neptunium ATCC 15444 4289153 YP_760961.1 CDS HNE_2266 NC_008358.1 2368931 2369962 D identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase 2368931..2369962 Hyphomonas neptunium ATCC 15444 4289165 YP_760962.1 CDS HNE_2267 NC_008358.1 2369969 2370394 R hypothetical protein complement(2369969..2370394) Hyphomonas neptunium ATCC 15444 4290145 YP_760963.1 CDS HNE_2268 NC_008358.1 2370394 2370741 R hypothetical protein complement(2370394..2370741) Hyphomonas neptunium ATCC 15444 4288274 YP_760964.1 CDS ndk NC_008358.1 2371007 2371429 R identified by similarity to SP:Q59636; match to protein family HMM PF00334; nucleoside diphosphate kinase complement(2371007..2371429) Hyphomonas neptunium ATCC 15444 4290444 YP_760965.1 CDS HNE_2270 NC_008358.1 2371581 2371916 D identified by match to protein family HMM PF03831; match to protein family HMM TIGR00686; hypothetical protein 2371581..2371916 Hyphomonas neptunium ATCC 15444 4288121 YP_760966.1 CDS HNE_2271 NC_008358.1 2372236 2372688 D identified by match to protein family HMM PF00583; acetyltransferase 2372236..2372688 Hyphomonas neptunium ATCC 15444 4287078 YP_760967.1 CDS HNE_2272 NC_008358.1 2372760 2373230 R identified by match to protein family HMM PF04364; putative DNA polymerase III chi subunit complement(2372760..2373230) Hyphomonas neptunium ATCC 15444 4290376 YP_760968.1 CDS HNE_2273 NC_008358.1 2373332 2374798 R identified by match to protein family HMM PF00883; match to protein family HMM PF02789; M17 family peptidase complement(2373332..2374798) Hyphomonas neptunium ATCC 15444 4287421 YP_760969.1 CDS HNE_2274 NC_008358.1 2374920 2376062 D identified by match to protein family HMM PF03739; putative permease 2374920..2376062 Hyphomonas neptunium ATCC 15444 4289144 YP_760970.1 CDS HNE_2275 NC_008358.1 2376062 2377183 D identified by match to protein family HMM PF03739; YjgP/YjgQ permease 2376062..2377183 Hyphomonas neptunium ATCC 15444 4287092 YP_760971.1 CDS topA NC_008358.1 2377254 2379833 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 2377254..2379833 Hyphomonas neptunium ATCC 15444 4287324 YP_760972.1 CDS HNE_2277 NC_008358.1 2379899 2380237 D hypothetical protein 2379899..2380237 Hyphomonas neptunium ATCC 15444 4287371 YP_760973.1 CDS HNE_2278 NC_008358.1 2380257 2380616 R hypothetical protein complement(2380257..2380616) Hyphomonas neptunium ATCC 15444 4287603 YP_760974.1 CDS HNE_2279 NC_008358.1 2380303 2380662 D hypothetical protein 2380303..2380662 Hyphomonas neptunium ATCC 15444 4289205 YP_760975.1 CDS rnr NC_008358.1 2380722 2383016 D identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 2380722..2383016 Hyphomonas neptunium ATCC 15444 4289375 YP_760976.1 CDS HNE_2281 NC_008358.1 2383121 2383837 D identified by match to protein family HMM PF00293; NUDIX family hydrolase 2383121..2383837 Hyphomonas neptunium ATCC 15444 4287375 YP_760977.1 CDS rpmG NC_008358.1 2383994 2384161 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2383994..2384161 Hyphomonas neptunium ATCC 15444 4290490 YP_760978.1 CDS HNE_2283 NC_008358.1 2384225 2385451 R identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator transporter complement(2384225..2385451) Hyphomonas neptunium ATCC 15444 4289087 YP_760979.1 CDS pleD NC_008358.1 2385513 2386880 R identified by similarity to GB:AAA87378.1; match to protein family HMM PF00072; match to protein family HMM PF00990; match to protein family HMM TIGR00254; response regulator PleD complement(2385513..2386880) Hyphomonas neptunium ATCC 15444 4287816 YP_760980.1 CDS HNE_2285 NC_008358.1 2386877 2387272 R identified by similarity to PDB:1M5T_A; match to protein family HMM PF00072; cell division response regulator DivK complement(2386877..2387272) Hyphomonas neptunium ATCC 15444 4290195 YP_760981.1 CDS HNE_2286 NC_008358.1 2387408 2388682 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2387408..2388682 Hyphomonas neptunium ATCC 15444 4289730 YP_760982.1 CDS HNE_2287 NC_008358.1 2388738 2389199 D identified by match to protein family HMM PF01042; putative endoribonuclease L-PSP 2388738..2389199 Hyphomonas neptunium ATCC 15444 4289834 YP_760983.1 CDS HNE_2288 NC_008358.1 2389208 2389942 D identified by match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase family protein 2389208..2389942 Hyphomonas neptunium ATCC 15444 4287058 YP_760984.1 CDS HNE_2289 NC_008358.1 2389954 2391114 D identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339; hypothetical protein 2389954..2391114 Hyphomonas neptunium ATCC 15444 4287453 YP_760985.1 CDS HNE_2290 NC_008358.1 2391123 2391557 D identified by match to protein family HMM PF01230; histidine triad family protein 2391123..2391557 Hyphomonas neptunium ATCC 15444 4289953 YP_760986.1 CDS gatB NC_008358.1 2391615 2393123 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(2391615..2393123) Hyphomonas neptunium ATCC 15444 4288601 YP_760987.1 CDS HNE_2292 NC_008358.1 2393216 2393755 R hypothetical protein complement(2393216..2393755) Hyphomonas neptunium ATCC 15444 4288723 YP_760988.1 CDS gatA NC_008358.1 2393715 2395187 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(2393715..2395187) Hyphomonas neptunium ATCC 15444 4287320 YP_760989.1 CDS HNE_2294 NC_008358.1 2395231 2395758 D hypothetical protein 2395231..2395758 Hyphomonas neptunium ATCC 15444 4289830 YP_760990.1 CDS HNE_2295 NC_008358.1 2395813 2396196 D identified by match to protein family HMM PF00856; SET domain-containing protein 2395813..2396196 Hyphomonas neptunium ATCC 15444 4289627 YP_760991.1 CDS HNE_2296 NC_008358.1 2396245 2397384 D zinc-binding dehydrogenase family oxidoreductase 2396245..2397384 Hyphomonas neptunium ATCC 15444 4289655 YP_760992.1 CDS HNE_2298 NC_008358.1 2397501 2397746 D hypothetical protein 2397501..2397746 Hyphomonas neptunium ATCC 15444 4287136 YP_760993.1 CDS HNE_2297 NC_008358.1 2397558 2397686 R hypothetical protein complement(2397558..2397686) Hyphomonas neptunium ATCC 15444 4289756 YP_760994.1 CDS gatC NC_008358.1 2397803 2398090 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(2397803..2398090) Hyphomonas neptunium ATCC 15444 4287475 YP_760995.1 CDS HNE_2300 NC_008358.1 2398166 2398621 D identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein 2398166..2398621 Hyphomonas neptunium ATCC 15444 4289548 YP_760996.1 CDS HNE_2301 NC_008358.1 2398618 2399544 D identified by match to protein family HMM PF03547; auxin efflux carrier family protein 2398618..2399544 Hyphomonas neptunium ATCC 15444 4289410 YP_760997.1 CDS pyrB NC_008358.1 2399600 2400547 D identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00670; aspartate carbamoyltransferase 2399600..2400547 Hyphomonas neptunium ATCC 15444 4290027 YP_760998.1 CDS HNE_2303 NC_008358.1 2400544 2401824 D identified by match to protein family HMM PF01979; match to protein family HMM TIGR00857; putative dihydroorotase 2400544..2401824 Hyphomonas neptunium ATCC 15444 4287587 YP_760999.1 CDS HNE_2304 NC_008358.1 2401828 2403303 D identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797; MATE efflux family protein 2401828..2403303 Hyphomonas neptunium ATCC 15444 4289798 YP_761000.1 CDS HNE_2305 NC_008358.1 2403384 2403785 D identified by similarity to GB:AAM39700.1; match to protein family HMM TIGR02096; hypothetical protein 2403384..2403785 Hyphomonas neptunium ATCC 15444 4290493 YP_761001.1 CDS HNE_2306 NC_008358.1 2403764 2404363 D identified by match to protein family HMM PF00583; acetyltransferase 2403764..2404363 Hyphomonas neptunium ATCC 15444 4288461 YP_761002.1 CDS HNE_2307 NC_008358.1 2404423 2406087 D identified by match to protein family HMM PF01546; match to protein family HMM PF04389; M20/M25/M40 family peptidase 2404423..2406087 Hyphomonas neptunium ATCC 15444 4290075 YP_761003.1 CDS HNE_2308 NC_008358.1 2406268 2407815 D identified by match to protein family HMM PF00501; AMP-binding protein 2406268..2407815 Hyphomonas neptunium ATCC 15444 4290257 YP_761004.1 CDS glpX NC_008358.1 2407964 2408917 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(2407964..2408917) Hyphomonas neptunium ATCC 15444 4288173 YP_761005.1 CDS hom NC_008358.1 2408970 2410253 R identified by match to protein family HMM PF00742; match to protein family HMM PF01113; match to protein family HMM PF01842; match to protein family HMM PF03447; homoserine dehydrogenase complement(2408970..2410253) Hyphomonas neptunium ATCC 15444 4287880 YP_761006.1 CDS HNE_2311 NC_008358.1 2410768 2411982 R identified by match to protein family HMM PF00155; classes I and II aminotransferase complement(2410768..2411982) Hyphomonas neptunium ATCC 15444 4290309 YP_761007.1 CDS HNE_2312 NC_008358.1 2411990 2412409 R putative lipoprotein complement(2411990..2412409) Hyphomonas neptunium ATCC 15444 4289574 YP_761008.1 CDS HNE_2313 NC_008358.1 2412480 2414312 D identified by similarity to SP:P52070; match to protein family HMM PF00561; match to protein family HMM PF07167; match to protein family HMM TIGR01838; PHA/PHB synthase family protein 2412480..2414312 Hyphomonas neptunium ATCC 15444 4288394 YP_761009.1 CDS argC NC_008358.1 2414341 2415276 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(2414341..2415276) Hyphomonas neptunium ATCC 15444 4289454 YP_761010.1 CDS rpsI NC_008358.1 2415362 2415844 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2415362..2415844) Hyphomonas neptunium ATCC 15444 4287487 YP_761011.1 CDS rplM NC_008358.1 2415852 2416316 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2415852..2416316) Hyphomonas neptunium ATCC 15444 4288564 YP_761012.1 CDS HNE_2317 NC_008358.1 2416534 2417319 D hypothetical protein 2416534..2417319 Hyphomonas neptunium ATCC 15444 4289214 YP_761013.1 CDS HNE_2318 NC_008358.1 2417303 2418358 R identified by match to protein family HMM PF02628; cytochrome c oxidase assembly protein complement(2417303..2418358) Hyphomonas neptunium ATCC 15444 4289272 YP_761014.1 CDS HNE_2319 NC_008358.1 2418373 2418663 D hypothetical protein 2418373..2418663 Hyphomonas neptunium ATCC 15444 4287776 YP_761015.1 CDS HNE_2320 NC_008358.1 2418981 2419568 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2418981..2419568) Hyphomonas neptunium ATCC 15444 4289022 YP_761016.1 CDS HNE_2321 NC_008358.1 2419779 2421032 D identified by similarity to SP:P38942; putative 4-hydroxybutyrate coenzyme A transferase 2419779..2421032 Hyphomonas neptunium ATCC 15444 4288265 YP_761017.1 CDS HNE_2322 NC_008358.1 2421091 2422029 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne5, transposase complement(2421091..2422029) Hyphomonas neptunium ATCC 15444 4289184 YP_761018.1 CDS HNE_2323 NC_008358.1 2422353 2423522 R identified by match to protein family HMM PF02515; CAIB/BAIF family protein complement(2422353..2423522) Hyphomonas neptunium ATCC 15444 4288407 YP_761019.1 CDS HNE_2324 NC_008358.1 2423535 2423936 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein complement(2423535..2423936) Hyphomonas neptunium ATCC 15444 4287838 YP_761020.1 CDS gabD NC_008358.1 2424101 2425561 D identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; succinate-semialdehyde dehydrogenase 2424101..2425561 Hyphomonas neptunium ATCC 15444 4289944 YP_761021.1 CDS HNE_2326 NC_008358.1 2425571 2426353 R identified by match to protein family HMM PF00165; match to protein family HMM PF02311; AraC family transcriptional regulator complement(2425571..2426353) Hyphomonas neptunium ATCC 15444 4287912 YP_761022.1 CDS HNE_2327 NC_008358.1 2426533 2427258 R hypothetical protein complement(2426533..2427258) Hyphomonas neptunium ATCC 15444 4289725 YP_761023.1 CDS HNE_2328 NC_008358.1 2427315 2430548 R identified by match to protein family HMM PF01979; match to protein family HMM PF07676; amidohydrolase family protein complement(2427315..2430548) Hyphomonas neptunium ATCC 15444 4287236 YP_761024.1 CDS HNE_2329 NC_008358.1 2430629 2432803 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01783; outer membrane receptor (OMR) family protein complement(2430629..2432803) Hyphomonas neptunium ATCC 15444 4289413 YP_761025.1 CDS HNE_2330 NC_008358.1 2433047 2434246 D identified by match to protein family HMM PF03929; PepSY-associated TM helix domain-containing protein 2433047..2434246 Hyphomonas neptunium ATCC 15444 4287957 YP_761026.1 CDS HNE_2331 NC_008358.1 2434306 2435265 D identified by match to protein family HMM PF07859; alpha/beta fold family hydrolase 2434306..2435265 Hyphomonas neptunium ATCC 15444 4289019 YP_761027.1 CDS HNE_2332 NC_008358.1 2435262 2435834 D hypothetical protein 2435262..2435834 Hyphomonas neptunium ATCC 15444 4290437 YP_761028.1 CDS pruA NC_008358.1 2435856 2437466 D identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236; 1-pyrroline-5-carboxylate dehydrogenase 2435856..2437466 Hyphomonas neptunium ATCC 15444 4289123 YP_761029.1 CDS HNE_2334 NC_008358.1 2437466 2438887 D identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835; sodium/alanine symporter family protein 2437466..2438887 Hyphomonas neptunium ATCC 15444 4289636 YP_761030.1 CDS HNE_2335 NC_008358.1 2439072 2440484 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein complement(2439072..2440484) Hyphomonas neptunium ATCC 15444 4289262 YP_761031.1 CDS HNE_2336 NC_008358.1 2441015 2441818 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(2441015..2441818) Hyphomonas neptunium ATCC 15444 4289074 YP_761032.1 CDS HNE_2337 NC_008358.1 2441815 2442660 R hypothetical protein complement(2441815..2442660) Hyphomonas neptunium ATCC 15444 4289690 YP_761033.1 CDS HNE_2338 NC_008358.1 2442664 2442936 R hypothetical protein complement(2442664..2442936) Hyphomonas neptunium ATCC 15444 4289458 YP_761034.1 CDS HNE_2339 NC_008358.1 2443047 2444651 R identified by match to protein family HMM PF07568; sensor histidine kinase complement(2443047..2444651) Hyphomonas neptunium ATCC 15444 4287126 YP_761035.1 CDS HNE_2340 NC_008358.1 2444720 2445325 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor complement(2444720..2445325) Hyphomonas neptunium ATCC 15444 4287553 YP_761036.1 CDS HNE_2342 NC_008358.1 2445307 2445606 D hypothetical protein 2445307..2445606 Hyphomonas neptunium ATCC 15444 4289701 YP_761037.1 CDS HNE_2341 NC_008358.1 2445322 2445531 R hypothetical protein complement(2445322..2445531) Hyphomonas neptunium ATCC 15444 4287554 YP_761038.1 CDS HNE_2343 NC_008358.1 2445552 2445677 R hypothetical protein complement(2445552..2445677) Hyphomonas neptunium ATCC 15444 4288795 YP_761039.1 CDS HNE_2344 NC_008358.1 2445725 2446513 D in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 2445725..2446513 Hyphomonas neptunium ATCC 15444 4287826 YP_761040.1 CDS HNE_2345 NC_008358.1 2446580 2446936 D identified by similarity to GB:AAN30562.1; match to protein family HMM PF05957; hypothetical protein 2446580..2446936 Hyphomonas neptunium ATCC 15444 4288571 YP_761041.1 CDS HNE_2346 NC_008358.1 2446939 2447373 D hypothetical protein 2446939..2447373 Hyphomonas neptunium ATCC 15444 4289319 YP_761042.1 CDS HNE_2347 NC_008358.1 2447399 2449246 D identified by match to protein family HMM PF02080; TrkA domain-containing protein 2447399..2449246 Hyphomonas neptunium ATCC 15444 4288666 YP_761043.1 CDS HNE_2348 NC_008358.1 2449278 2449517 D identified by match to protein family HMM PF07043; hypothetical protein 2449278..2449517 Hyphomonas neptunium ATCC 15444 4288169 YP_761044.1 CDS HNE_2349 NC_008358.1 2449673 2449909 D identified by match to protein family HMM PF05532; CsbD-like protein 2449673..2449909 Hyphomonas neptunium ATCC 15444 4287590 YP_761045.1 CDS HNE_2350 NC_008358.1 2450042 2451220 R identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229; putative sensory box sensor histidine kinase complement(2450042..2451220) Hyphomonas neptunium ATCC 15444 4288171 YP_761046.1 CDS HNE_2351 NC_008358.1 2451504 2451890 R identified by similarity to SP:P40679; regulatory protein complement(2451504..2451890) Hyphomonas neptunium ATCC 15444 4290000 YP_761047.1 CDS HNE_2352 NC_008358.1 2452108 2452590 R identified by match to protein family HMM PF01638; hypothetical protein complement(2452108..2452590) Hyphomonas neptunium ATCC 15444 4287622 YP_761048.1 CDS HNE_2353 NC_008358.1 2452659 2453417 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2452659..2453417 Hyphomonas neptunium ATCC 15444 4287746 YP_761049.1 CDS HNE_2354 NC_008358.1 2453417 2454013 D identified by similarity to SP:Q51948; match to protein family HMM PF01323; putative 2-hydroxychromene-2-carboxylate isomerase 2453417..2454013 Hyphomonas neptunium ATCC 15444 4289912 YP_761050.1 CDS HNE_2355 NC_008358.1 2454207 2456594 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2454207..2456594 Hyphomonas neptunium ATCC 15444 4290105 YP_761051.1 CDS HNE_2356 NC_008358.1 2456641 2457585 D identified by similarity to GB:AAQ58180.1; match to protein family HMM PF01925; hypothetical protein 2456641..2457585 Hyphomonas neptunium ATCC 15444 4287347 YP_761052.1 CDS HNE_2357 NC_008358.1 2457587 2458741 D identified by match to protein family HMM PF00155; classes I and II aminotransferase 2457587..2458741 Hyphomonas neptunium ATCC 15444 4288414 YP_761053.1 CDS HNE_2358 NC_008358.1 2458920 2460029 D identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254; diguanylate cyclase 2458920..2460029 Hyphomonas neptunium ATCC 15444 4290164 YP_761054.1 CDS HNE_2359 NC_008358.1 2460054 2460431 R hypothetical protein complement(2460054..2460431) Hyphomonas neptunium ATCC 15444 4289265 YP_761055.1 CDS HNE_2360 NC_008358.1 2460571 2460918 D identified by match to protein family HMM PF03413; peptidase domain-containing protein 2460571..2460918 Hyphomonas neptunium ATCC 15444 4288228 YP_761056.1 CDS HNE_2361 NC_008358.1 2460918 2461580 D identified by similarity to SP:P52076; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 2460918..2461580 Hyphomonas neptunium ATCC 15444 4288279 YP_761057.1 CDS HNE_2362 NC_008358.1 2461577 2462899 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2461577..2462899 Hyphomonas neptunium ATCC 15444 4288255 YP_761058.1 CDS HNE_2363 NC_008358.1 2462877 2463470 R identified by similarity to PIR:H86766; hypothetical protein complement(2462877..2463470) Hyphomonas neptunium ATCC 15444 4289294 YP_761059.1 CDS folK NC_008358.1 2463467 2463967 R identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(2463467..2463967) Hyphomonas neptunium ATCC 15444 4290202 YP_761060.1 CDS folB NC_008358.1 2463960 2464325 R identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase complement(2463960..2464325) Hyphomonas neptunium ATCC 15444 4287949 YP_761061.1 CDS folP NC_008358.1 2464315 2465148 R identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(2464315..2465148) Hyphomonas neptunium ATCC 15444 4287519 YP_761062.1 CDS HNE_2367 NC_008358.1 2465141 2465968 R identified by match to protein family HMM PF01063; class IV aminotransferase complement(2465141..2465968) Hyphomonas neptunium ATCC 15444 4289223 YP_761063.1 CDS pabA NC_008358.1 2465965 2466549 R identified by similarity to SP:P28819; match to protein family HMM PF00117; match to protein family HMM TIGR00566; 4-amino-4-deoxychorismate synthase, glutamine amidotransferase subunit complement(2465965..2466549) Hyphomonas neptunium ATCC 15444 4287224 YP_761064.1 CDS pabB NC_008358.1 2466546 2467904 R identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; 4-amino-4-deoxychorismate synthase, aminodeoxychorismate synthase subunit complement(2466546..2467904) Hyphomonas neptunium ATCC 15444 4287331 YP_761065.1 CDS HNE_2370 NC_008358.1 2468059 2468400 D hypothetical protein 2468059..2468400 Hyphomonas neptunium ATCC 15444 4289887 YP_761066.1 CDS HNE_2371 NC_008358.1 2468379 2468726 R hypothetical protein complement(2468379..2468726) Hyphomonas neptunium ATCC 15444 4288873 YP_761067.1 CDS HNE_2372 NC_008358.1 2468562 2469785 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2468562..2469785 Hyphomonas neptunium ATCC 15444 4287180 YP_761068.1 CDS HNE_2373 NC_008358.1 2469798 2472878 D identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux protein 2469798..2472878 Hyphomonas neptunium ATCC 15444 4288483 YP_761069.1 CDS HNE_2374 NC_008358.1 2472875 2473627 R identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein complement(2472875..2473627) Hyphomonas neptunium ATCC 15444 4290470 YP_761070.1 CDS HNE_2375 NC_008358.1 2473672 2474067 R identified by match to protein family HMM PF01042; putative endoribonuclease L-PSP complement(2473672..2474067) Hyphomonas neptunium ATCC 15444 4290034 YP_761071.1 CDS mdoH NC_008358.1 2474226 2476394 R necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH complement(2474226..2476394) Hyphomonas neptunium ATCC 15444 4289394 YP_761072.1 CDS mdoG NC_008358.1 2476391 2478043 R involved in the biosynthesis of osmoregulated periplasmic glucans; required for the assembly of the polyglucose structure of glucan; glucan biosynthesis protein G complement(2476391..2478043) Hyphomonas neptunium ATCC 15444 4289659 YP_761073.1 CDS secD2 NC_008358.1 2478532 2481054 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(2478532..2481054) Hyphomonas neptunium ATCC 15444 4290433 YP_761074.1 CDS HNE_2379 NC_008358.1 2481354 2481740 R hypothetical protein complement(2481354..2481740) Hyphomonas neptunium ATCC 15444 4287032 YP_761075.1 CDS HNE_2380 NC_008358.1 2482007 2483002 D putative 3-oxoacyl-(acyl-carrier-protein) synthase III 2482007..2483002 Hyphomonas neptunium ATCC 15444 4289428 YP_761076.1 CDS HNE_2381 NC_008358.1 2482999 2483967 D identified by similarity to SP:P75821; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 2482999..2483967 Hyphomonas neptunium ATCC 15444 4289196 YP_761077.1 CDS HNE_2382 NC_008358.1 2483964 2484740 D identified by match to protein family HMM PF00753; metallo-beta-lactamase superfamily protein 2483964..2484740 Hyphomonas neptunium ATCC 15444 4288758 YP_761078.1 CDS HNE_2383 NC_008358.1 2484737 2486002 D identified by match to protein family HMM TIGR02304; hypothetical protein 2484737..2486002 Hyphomonas neptunium ATCC 15444 4287643 YP_761079.1 CDS HNE_2384 NC_008358.1 2485999 2487261 D identified by similarity to GB:AAK31353.1; putative glycosyl transferase 2485999..2487261 Hyphomonas neptunium ATCC 15444 4288741 YP_761080.1 CDS HNE_2385 NC_008358.1 2487218 2487718 R hypothetical protein complement(2487218..2487718) Hyphomonas neptunium ATCC 15444 4289546 YP_761081.1 CDS HNE_2386 NC_008358.1 2487917 2490232 R identified by match to protein family HMM PF00575; S1 RNA-binding domain-containing protein complement(2487917..2490232) Hyphomonas neptunium ATCC 15444 4287336 YP_761082.1 CDS HNE_2387 NC_008358.1 2490358 2490843 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(2490358..2490843) Hyphomonas neptunium ATCC 15444 4288787 YP_761083.1 CDS ohr NC_008358.1 2490966 2491400 D identified by similarity to SP:O68390; match to protein family HMM PF02566; organic hydroperoxide resistance protein 2490966..2491400 Hyphomonas neptunium ATCC 15444 4289829 YP_761084.1 CDS HNE_2389 NC_008358.1 2491975 2494302 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein 2491975..2494302 Hyphomonas neptunium ATCC 15444 4288280 YP_761085.1 CDS HNE_2390 NC_008358.1 2494358 2495767 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator transporter 2494358..2495767 Hyphomonas neptunium ATCC 15444 4287443 YP_761086.1 CDS HNE_2391 NC_008358.1 2495836 2496621 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(2495836..2496621) Hyphomonas neptunium ATCC 15444 4287202 YP_761087.1 CDS HNE_2392 NC_008358.1 2496632 2497672 R identified by similarity to GB:AAR37535.1; hypothetical protein complement(2496632..2497672) Hyphomonas neptunium ATCC 15444 4288618 YP_761088.1 CDS HNE_2393 NC_008358.1 2497774 2498496 R identified by similarity to SP:P22773; match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02018; putative histidine utilization repressor complement(2497774..2498496) Hyphomonas neptunium ATCC 15444 4290157 YP_761089.1 CDS hutF NC_008358.1 2498561 2499931 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(2498561..2499931) Hyphomonas neptunium ATCC 15444 4290385 YP_761090.1 CDS hutI NC_008358.1 2500009 2501229 D identified by similarity to SP:P42084; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR01224; imidazolonepropionase 2500009..2501229 Hyphomonas neptunium ATCC 15444 4289897 YP_761091.1 CDS hutH NC_008358.1 2501226 2502767 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 2501226..2502767 Hyphomonas neptunium ATCC 15444 4287124 YP_761092.1 CDS hutG NC_008358.1 2502764 2503582 D identified by match to protein family HMM PF05013; match to protein family HMM TIGR02017; N-formylglutamate amidohydrolase 2502764..2503582 Hyphomonas neptunium ATCC 15444 4289386 YP_761093.1 CDS hutU NC_008358.1 2503594 2505261 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 2503594..2505261 Hyphomonas neptunium ATCC 15444 4287731 YP_761094.1 CDS HNE_2399 NC_008358.1 2505275 2505823 R identified by match to protein family HMM PF08212; lipocalin-like lipoprotein complement(2505275..2505823) Hyphomonas neptunium ATCC 15444 4287589 YP_761095.1 CDS HNE_2400 NC_008358.1 2505855 2506670 R identified by similarity to SP:P77486; match to protein family HMM PF06629; putative MltA-interacting protein MipA complement(2505855..2506670) Hyphomonas neptunium ATCC 15444 4288363 YP_761096.1 CDS HNE_2401 NC_008358.1 2506767 2507420 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2506767..2507420) Hyphomonas neptunium ATCC 15444 4289480 YP_761097.1 CDS HNE_2402 NC_008358.1 2507644 2508018 D cytochrome c family protein 2507644..2508018 Hyphomonas neptunium ATCC 15444 4289451 YP_761098.1 CDS HNE_2403 NC_008358.1 2508033 2509397 R putative lipoprotein complement(2508033..2509397) Hyphomonas neptunium ATCC 15444 4287792 YP_761099.1 CDS HNE_2404 NC_008358.1 2509623 2510801 D identified by match to protein family HMM PF00529; membrane fusion protein family protein 2509623..2510801 Hyphomonas neptunium ATCC 15444 4289306 YP_761100.1 CDS HNE_2405 NC_008358.1 2510876 2512444 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 2510876..2512444 Hyphomonas neptunium ATCC 15444 4288725 YP_761101.1 CDS HNE_2406 NC_008358.1 2512470 2513159 D identified by similarity to GB:AAK25385.1; match to protein family HMM PF05175; hypothetical protein 2512470..2513159 Hyphomonas neptunium ATCC 15444 4288285 YP_761102.1 CDS HNE_2407 NC_008358.1 2513557 2513691 D hypothetical protein 2513557..2513691 Hyphomonas neptunium ATCC 15444 4287377 YP_761103.1 CDS HNE_2408 NC_008358.1 2513938 2516421 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2513938..2516421 Hyphomonas neptunium ATCC 15444 4287511 YP_761104.1 CDS glpQ NC_008358.1 2516447 2517472 D identified by similarity to SP:P09394; match to protein family HMM PF03009; glycerophosphoryl diester phosphodiesterase 2516447..2517472 Hyphomonas neptunium ATCC 15444 4289258 YP_761105.1 CDS HNE_2410 NC_008358.1 2517614 2517910 D hypothetical protein 2517614..2517910 Hyphomonas neptunium ATCC 15444 4289026 YP_761106.1 CDS HNE_2411 NC_008358.1 2517907 2518161 D hypothetical protein 2517907..2518161 Hyphomonas neptunium ATCC 15444 4290154 YP_761107.1 CDS HNE_2412 NC_008358.1 2518175 2519872 D identified by match to protein family HMM PF07969; amidohydrolase family protein 2518175..2519872 Hyphomonas neptunium ATCC 15444 4289417 YP_761108.1 CDS HNE_2413 NC_008358.1 2519869 2520831 D identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561; putative epoxide hydrolase 2519869..2520831 Hyphomonas neptunium ATCC 15444 4289091 YP_761109.1 CDS HNE_2414 NC_008358.1 2520850 2522370 D identified by similarity to GB:CAD17846.1; match to protein family HMM PF00890; match to protein family HMM PF01266; hypothetical protein 2520850..2522370 Hyphomonas neptunium ATCC 15444 4288664 YP_761110.1 CDS HNE_2415 NC_008358.1 2522408 2523133 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2522408..2523133 Hyphomonas neptunium ATCC 15444 4288657 YP_761111.1 CDS dadA NC_008358.1 2523138 2524370 R identified by similarity to SP:P29011; match to protein family HMM PF01266; D-amino acid dehydrogenase small subunit complement(2523138..2524370) Hyphomonas neptunium ATCC 15444 4288974 YP_761112.1 CDS alr2 NC_008358.1 2524367 2525557 R identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(2524367..2525557) Hyphomonas neptunium ATCC 15444 4289342 YP_761113.1 CDS hemL NC_008358.1 2525547 2526824 R identified by similarity to SP:P23893; match to protein family HMM PF00202; glutamate-1-semialdehyde-2,1-aminomutase complement(2525547..2526824) Hyphomonas neptunium ATCC 15444 4287208 YP_761114.1 CDS HNE_2419 NC_008358.1 2526914 2527861 D identified by match to protein family HMM PF00294; PfkB family kinase 2526914..2527861 Hyphomonas neptunium ATCC 15444 4290547 YP_761115.1 CDS HNE_2420 NC_008358.1 2527861 2528514 D identified by match to protein family HMM PF00596; putative L-ribulose-5-phosphate 4-epimerase 2527861..2528514 Hyphomonas neptunium ATCC 15444 4288320 YP_761116.1 CDS HNE_2421 NC_008358.1 2528595 2530133 D identified by similarity to GB:BAB47763.1; hypothetical protein 2528595..2530133 Hyphomonas neptunium ATCC 15444 4290022 YP_761117.1 CDS HNE_2422 NC_008358.1 2530235 2531659 R hypothetical protein complement(2530235..2531659) Hyphomonas neptunium ATCC 15444 4288531 YP_761118.1 CDS HNE_2423 NC_008358.1 2531661 2533913 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(2531661..2533913) Hyphomonas neptunium ATCC 15444 4289232 YP_761119.1 CDS HNE_2424 NC_008358.1 2533951 2534733 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2533951..2534733 Hyphomonas neptunium ATCC 15444 4287583 YP_761120.1 CDS HNE_2425 NC_008358.1 2534749 2534952 R identified by similarity to GB:BAC51041.1; hypothetical protein complement(2534749..2534952) Hyphomonas neptunium ATCC 15444 4289890 YP_761121.1 CDS HNE_2426 NC_008358.1 2534975 2535433 R identified by match to protein family HMM PF00085; putative thioredoxin complement(2534975..2535433) Hyphomonas neptunium ATCC 15444 4287601 YP_761122.1 CDS sqr NC_008358.1 2535457 2536728 R identified by similarity to GB:CAA66112.1; match to protein family HMM PF07992; sulfide-quinone oxidoreductase complement(2535457..2536728) Hyphomonas neptunium ATCC 15444 4288997 YP_761123.1 CDS HNE_2428 NC_008358.1 2536868 2537227 D hypothetical protein 2536868..2537227 Hyphomonas neptunium ATCC 15444 4289664 YP_761124.1 CDS HNE_2429 NC_008358.1 2537214 2538206 D identified by similarity to SP:P37973; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 2537214..2538206 Hyphomonas neptunium ATCC 15444 4290051 YP_761125.1 CDS HNE_2430 NC_008358.1 2538212 2541496 D identified by match to protein family HMM PF00873; RND efflux transporter 2538212..2541496 Hyphomonas neptunium ATCC 15444 4288940 YP_761126.1 CDS HNE_2431 NC_008358.1 2541477 2541800 D identified by similarity to SP:P28267; match to protein family HMM PF01022; putative transcriptional regulator NolR 2541477..2541800 Hyphomonas neptunium ATCC 15444 4289711 YP_761127.1 CDS HNE_2432 NC_008358.1 2541876 2543516 D identified by match to protein family HMM PF05977; match to protein family HMM PF07690; major facilitator transporter 2541876..2543516 Hyphomonas neptunium ATCC 15444 4289816 YP_761128.1 CDS HNE_2433 NC_008358.1 2543615 2544595 D identified by similarity to SP:Q08257; match to protein family HMM PF00107; putative quinone oxidoreductase 2543615..2544595 Hyphomonas neptunium ATCC 15444 4289147 YP_761129.1 CDS HNE_2434 NC_008358.1 2544749 2545312 D hypothetical protein 2544749..2545312 Hyphomonas neptunium ATCC 15444 4288935 YP_761130.1 CDS HNE_2435 NC_008358.1 2545312 2547105 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2545312..2547105 Hyphomonas neptunium ATCC 15444 4287595 YP_761131.1 CDS HNE_2436 NC_008358.1 2547114 2549393 R hypothetical protein complement(2547114..2549393) Hyphomonas neptunium ATCC 15444 4287038 YP_761132.1 CDS HNE_2437 NC_008358.1 2549390 2550313 R hypothetical protein complement(2549390..2550313) Hyphomonas neptunium ATCC 15444 4289056 YP_761133.1 CDS HNE_2438 NC_008358.1 2550446 2550997 R identified by match to protein family HMM PF03358; NADPH-dependent FMN reductase complement(2550446..2550997) Hyphomonas neptunium ATCC 15444 4288486 YP_761134.1 CDS HNE_2439 NC_008358.1 2551071 2551907 R identified by similarity to GB:AAK23325.1; hypothetical protein complement(2551071..2551907) Hyphomonas neptunium ATCC 15444 4287749 YP_761135.1 CDS HNE_2440 NC_008358.1 2551993 2552586 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2551993..2552586 Hyphomonas neptunium ATCC 15444 4288227 YP_761136.1 CDS HNE_2441 NC_008358.1 2552632 2553888 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(2552632..2553888) Hyphomonas neptunium ATCC 15444 4287798 YP_761137.1 CDS HNE_2442 NC_008358.1 2553904 2555028 R identified by match to protein family HMM PF00441; match to protein family HMM PF02771; acyl-CoA dehydrogenase family protein complement(2553904..2555028) Hyphomonas neptunium ATCC 15444 4288585 YP_761138.1 CDS HNE_2443 NC_008358.1 2555165 2555962 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(2555165..2555962) Hyphomonas neptunium ATCC 15444 4290420 YP_761139.1 CDS fcs4 NC_008358.1 2556177 2557874 D identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; feruloyl-CoA synthetase 2556177..2557874 Hyphomonas neptunium ATCC 15444 4288660 YP_761140.1 CDS HNE_2445 NC_008358.1 2557871 2559349 R identified by match to protein family HMM TIGR00792; sugar glycoside-pentoside-hexuronide (GPH):cation symporter family protein complement(2557871..2559349) Hyphomonas neptunium ATCC 15444 4290081 YP_761141.1 CDS HNE_2446 NC_008358.1 2559259 2561724 R identified by match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691; glycosyl hydrolase family protein complement(2559259..2561724) Hyphomonas neptunium ATCC 15444 4288440 YP_761142.1 CDS HNE_2447 NC_008358.1 2561854 2562564 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2561854..2562564 Hyphomonas neptunium ATCC 15444 4288165 YP_761143.1 CDS HNE_2448 NC_008358.1 2562670 2565006 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2562670..2565006 Hyphomonas neptunium ATCC 15444 4288565 YP_761144.1 CDS HNE_2449 NC_008358.1 2565115 2566494 D identified by match to protein family HMM PF00884; sulfatase family protein 2565115..2566494 Hyphomonas neptunium ATCC 15444 4288922 YP_761145.1 CDS HNE_2450 NC_008358.1 2566629 2567819 D identified by match to protein family HMM PF07690; major facilitator family transporter 2566629..2567819 Hyphomonas neptunium ATCC 15444 4290067 YP_761146.1 CDS HNE_2451 NC_008358.1 2568080 2571001 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782; outer membrane receptor (OMR) family protein 2568080..2571001 Hyphomonas neptunium ATCC 15444 4288861 YP_761147.1 CDS HNE_2452 NC_008358.1 2571012 2572898 D identified by similarity to GB:BAB51192.1; match to protein family HMM PF05787; hypothetical protein 2571012..2572898 Hyphomonas neptunium ATCC 15444 4287277 YP_761148.1 CDS HNE_2453 NC_008358.1 2573015 2573368 D hypothetical protein 2573015..2573368 Hyphomonas neptunium ATCC 15444 4287116 YP_761149.1 CDS HNE_2454 NC_008358.1 2573381 2574274 D identified by match to protein family HMM PF00691; OmpA family protein 2573381..2574274 Hyphomonas neptunium ATCC 15444 4287010 YP_761150.1 CDS HNE_2455 NC_008358.1 2574343 2575878 R identified by match to protein family HMM PF00245; alkaline phosphatase complement(2574343..2575878) Hyphomonas neptunium ATCC 15444 4290228 YP_761151.1 CDS HNE_2456 NC_008358.1 2576003 2578636 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(2576003..2578636) Hyphomonas neptunium ATCC 15444 4289625 YP_761152.1 CDS HNE_2457 NC_008358.1 2578838 2579623 D identified by similarity to SP:P15302; match to protein family HMM PF00702; HAD superfamily hydrolase 2578838..2579623 Hyphomonas neptunium ATCC 15444 4288275 YP_761153.1 CDS HNE_2458 NC_008358.1 2579610 2580443 R identified by match to protein family HMM PF01380; match to protein family HMM PF01418; RpiR family transcriptional regulator complement(2579610..2580443) Hyphomonas neptunium ATCC 15444 4289832 YP_761154.1 CDS phnD NC_008358.1 2580711 2581634 D identified by match to protein family HMM TIGR01098; phosphonate ABC transporter periplasmic phosphonate-binding protein 2580711..2581634 Hyphomonas neptunium ATCC 15444 4290440 YP_761155.1 CDS phnC NC_008358.1 2581634 2582419 D identified by similarity to SP:P16677; match to protein family HMM PF00005; phosphonate ABC transporter ATP-binding protein 2581634..2582419 Hyphomonas neptunium ATCC 15444 4288596 YP_761156.1 CDS phnE NC_008358.1 2582416 2583438 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097; phosphonate ABC transporter permease 2582416..2583438 Hyphomonas neptunium ATCC 15444 4288717 YP_761157.1 CDS HNE_2462 NC_008358.1 2583495 2584736 R identified by similarity to GB:CAB65715.2; match to protein family HMM PF00999; putative transporter complement(2583495..2584736) Hyphomonas neptunium ATCC 15444 4288292 YP_761158.1 CDS HNE_2463 NC_008358.1 2584980 2586956 R identified by match to protein family HMM PF01757; acyltransferase family protein complement(2584980..2586956) Hyphomonas neptunium ATCC 15444 4289427 YP_761159.1 CDS HNE_2464 NC_008358.1 2587251 2587985 D hypothetical protein 2587251..2587985 Hyphomonas neptunium ATCC 15444 4288424 YP_761160.1 CDS HNE_2465 NC_008358.1 2587921 2589486 D identified by similarity to GB:BAB51085.1; hypothetical protein 2587921..2589486 Hyphomonas neptunium ATCC 15444 4288755 YP_761161.1 CDS HNE_2466 NC_008358.1 2589483 2592746 D identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; putative DNA polymerase III subunit alpha 2589483..2592746 Hyphomonas neptunium ATCC 15444 4288261 YP_761162.1 CDS katE NC_008358.1 2592883 2594955 D identified by match to protein family HMM PF00199; match to protein family HMM PF06628; catalase HPII 2592883..2594955 Hyphomonas neptunium ATCC 15444 4289371 YP_761163.1 CDS HNE_2468 NC_008358.1 2594991 2596220 D identified by match to protein family HMM PF01266; putative oxidoreductase 2594991..2596220 Hyphomonas neptunium ATCC 15444 4289650 YP_761164.1 CDS hup2 NC_008358.1 2596517 2596792 R identified by similarity to SP:P08821; match to protein family HMM PF00216; DNA-binding protein HU complement(2596517..2596792) Hyphomonas neptunium ATCC 15444 4289145 YP_761165.1 CDS HNE_2470 NC_008358.1 2597382 2598428 R identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase complement(2597382..2598428) Hyphomonas neptunium ATCC 15444 4289053 YP_761166.1 CDS HNE_2471 NC_008358.1 2599002 2599937 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 2599002..2599937 Hyphomonas neptunium ATCC 15444 4287629 YP_761167.1 CDS HNE_2472 NC_008358.1 2600134 2600910 D hypothetical protein 2600134..2600910 Hyphomonas neptunium ATCC 15444 4287705 YP_761168.1 CDS HNE_2473 NC_008358.1 2600922 2601476 D hypothetical protein 2600922..2601476 Hyphomonas neptunium ATCC 15444 4290537 YP_761169.1 CDS HNE_2474 NC_008358.1 2601481 2605245 D hypothetical protein 2601481..2605245 Hyphomonas neptunium ATCC 15444 4289566 YP_761170.1 CDS HNE_2475 NC_008358.1 2605398 2605787 R hypothetical protein complement(2605398..2605787) Hyphomonas neptunium ATCC 15444 4287060 YP_761171.1 CDS HNE_2476 NC_008358.1 2606183 2606977 R identified by similarity to GB:AAF99434.1; putative sulfur oxidation diheme cytochrome SoxA complement(2606183..2606977) Hyphomonas neptunium ATCC 15444 4289334 YP_761172.1 CDS HNE_2477 NC_008358.1 2606974 2607294 R identified by similarity to GB:CAB94381.1; putative sulfur oxidation protein SoxZ complement(2606974..2607294) Hyphomonas neptunium ATCC 15444 4289896 YP_761173.1 CDS soxY NC_008358.1 2607309 2607782 R with SoxZ catalyzes the oxidation of sulfur compounds; sulfur oxidation protein SoxY complement(2607309..2607782) Hyphomonas neptunium ATCC 15444 4288409 YP_761174.1 CDS HNE_2479 NC_008358.1 2607790 2608245 R identified by similarity to GB:AAF99431.1; putative sulfur oxidation cytochrome SoxX complement(2607790..2608245) Hyphomonas neptunium ATCC 15444 4288985 YP_761175.1 CDS HNE_2480 NC_008358.1 2608242 2609519 R identified by similarity to SP:Q06530; match to protein family HMM PF07992; match to protein family HMM TIGR01409; putative sulfide dehydrogenase, flavoprotein subunit complement(2608242..2609519) Hyphomonas neptunium ATCC 15444 4288833 YP_761176.1 CDS HNE_2481 NC_008358.1 2609516 2609857 R identified by similarity to SP:P20958; putative sulfide dehydrogenase, cytochrome subunit complement(2609516..2609857) Hyphomonas neptunium ATCC 15444 4289749 YP_761177.1 CDS HNE_2482 NC_008358.1 2609860 2612046 R identified by similarity to SP:Q51698; match to protein family HMM PF01315; match to protein family HMM PF02738; match to protein family HMM TIGR01409; putative isoquinoline 1-oxidoreductase subunit beta complement(2609860..2612046) Hyphomonas neptunium ATCC 15444 4289828 YP_761178.1 CDS HNE_2483 NC_008358.1 2612062 2612517 R identified by similarity to SP:Q51697; match to protein family HMM PF00111; match to protein family HMM PF01799; putative isoquinoline 1-oxidoreductase subunit alpha complement(2612062..2612517) Hyphomonas neptunium ATCC 15444 4289185 YP_761179.1 CDS HNE_2484 NC_008358.1 2612907 2613314 R hypothetical protein complement(2612907..2613314) Hyphomonas neptunium ATCC 15444 4289445 YP_761180.1 CDS HNE_2485 NC_008358.1 2613435 2613953 R selenoprotein complement(2613435..2613953) Hyphomonas neptunium ATCC 15444 4290296 YP_761181.1 CDS HNE_2486 NC_008358.1 2614010 2615599 R identified by similarity to GB:BAC81190.1; thiol-disulfide oxidoreductase domain-containing protein complement(2614010..2615599) Hyphomonas neptunium ATCC 15444 4290456 YP_761182.1 CDS selB NC_008358.1 2615805 2617676 R identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR00475; selenocysteine-specific translation elongation factor complement(2615805..2617676) Hyphomonas neptunium ATCC 15444 4289475 YP_761183.1 CDS selA NC_008358.1 2617673 2619064 R identified by match to protein family HMM PF01053; match to protein family HMM PF03841; match to protein family HMM TIGR00474; L-seryl-tRNA selenium transferase complement(2617673..2619064) Hyphomonas neptunium ATCC 15444 4288076 YP_761184.1 CDS HNE_2490 NC_008358.1 2619226 2621412 D identified by match to protein family HMM PF00070; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase / selenide, water dikinase 2619226..2621412 Hyphomonas neptunium ATCC 15444 4290489 YP_761185.1 CDS HNE_2491 NC_008358.1 2621405 2622487 R catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase complement(2621405..2622487) Hyphomonas neptunium ATCC 15444 4287434 YP_761186.1 CDS HNE_2492 NC_008358.1 2622942 2623235 R hypothetical protein complement(2622942..2623235) Hyphomonas neptunium ATCC 15444 4290338 YP_761187.1 CDS HNE_2493 NC_008358.1 2623264 2623383 D hypothetical protein 2623264..2623383 Hyphomonas neptunium ATCC 15444 4290352 YP_761188.1 CDS HNE_2494 NC_008358.1 2623409 2624287 R hypothetical protein complement(2623409..2624287) Hyphomonas neptunium ATCC 15444 4289077 YP_761189.1 CDS HNE_2495 NC_008358.1 2624256 2626670 R identified by match to protein family HMM PF00577; fimbrial usher protein complement(2624256..2626670) Hyphomonas neptunium ATCC 15444 4288107 YP_761190.1 CDS HNE_2496 NC_008358.1 2626697 2627437 R identified by similarity to GB:AAN82651.1; putative fimbrial assembly protein complement(2626697..2627437) Hyphomonas neptunium ATCC 15444 4288815 YP_761191.1 CDS HNE_2497 NC_008358.1 2627512 2627991 R hypothetical protein complement(2627512..2627991) Hyphomonas neptunium ATCC 15444 4288628 YP_761192.1 CDS HNE_2498 NC_008358.1 2628118 2628210 R hypothetical protein complement(2628118..2628210) Hyphomonas neptunium ATCC 15444 4287151 YP_761193.1 CDS HNE_2499 NC_008358.1 2628795 2628905 D hypothetical protein 2628795..2628905 Hyphomonas neptunium ATCC 15444 4288748 YP_761194.1 CDS HNE_2500 NC_008358.1 2629327 2630712 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein complement(2629327..2630712) Hyphomonas neptunium ATCC 15444 4289097 YP_761195.1 CDS HNE_2501 NC_008358.1 2630752 2632407 R catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase complement(2630752..2632407) Hyphomonas neptunium ATCC 15444 4290258 YP_761196.1 CDS HNE_2502 NC_008358.1 2632591 2635284 D identified by match to protein family HMM PF00196; LuxR family transcriptional regulator 2632591..2635284 Hyphomonas neptunium ATCC 15444 4289552 YP_761197.1 CDS HNE_2503 NC_008358.1 2635451 2637037 D identified by similarity to SP:Q01262; match to protein family HMM PF01968; match to protein family HMM PF05378; hydantoinase/oxoprolinase family protein 2635451..2637037 Hyphomonas neptunium ATCC 15444 4288648 YP_761198.1 CDS HNE_2504 NC_008358.1 2637040 2638194 D identified by match to protein family HMM PF06032; hypothetical protein 2637040..2638194 Hyphomonas neptunium ATCC 15444 4290351 YP_761199.1 CDS HNE_2505 NC_008358.1 2638245 2640437 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2638245..2640437 Hyphomonas neptunium ATCC 15444 4290271 YP_761200.1 CDS HNE_2506 NC_008358.1 2641198 2642781 D identified by match to protein family HMM PF00128; glycosyl hydrolase family protein 2641198..2642781 Hyphomonas neptunium ATCC 15444 4289641 YP_761201.1 CDS HNE_2507 NC_008358.1 2642924 2643889 D identified by match to protein family HMM PF01063; class IV aminotransferase 2642924..2643889 Hyphomonas neptunium ATCC 15444 4287346 YP_761202.1 CDS HNE_2508 NC_008358.1 2643950 2644699 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2643950..2644699) Hyphomonas neptunium ATCC 15444 4288793 YP_761203.1 CDS HNE_2509 NC_008358.1 2644967 2645719 D hypothetical protein 2644967..2645719 Hyphomonas neptunium ATCC 15444 4287002 YP_761204.1 CDS HNE_2510 NC_008358.1 2646326 2646589 R identified by match to protein family HMM PF01258; hypothetical protein complement(2646326..2646589) Hyphomonas neptunium ATCC 15444 4290297 YP_761205.1 CDS HNE_2511 NC_008358.1 2646955 2647659 R identified by similarity to GB:BAB52672.1; ISHne6, transposase complement(2646955..2647659) Hyphomonas neptunium ATCC 15444 4288981 YP_761206.1 CDS HNE_2512 NC_008358.1 2648277 2652758 R identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; YD repeat-/RHS repeat-containing protein complement(2648277..2652758) Hyphomonas neptunium ATCC 15444 4289419 YP_761207.1 CDS HNE_2513 NC_008358.1 2652905 2654236 R identified by similarity to PIR:AH2137; hypothetical protein complement(2652905..2654236) Hyphomonas neptunium ATCC 15444 4288920 YP_761208.1 CDS HNE_2514 NC_008358.1 2655587 2657671 D identified by match to protein family HMM PF00263; match to protein family HMM PF03958; type II secretion system protein 2655587..2657671 Hyphomonas neptunium ATCC 15444 4288495 YP_761209.1 CDS HNE_2515 NC_008358.1 2657668 2658372 D hypothetical protein 2657668..2658372 Hyphomonas neptunium ATCC 15444 4289482 YP_761210.1 CDS gspG2 NC_008358.1 2658362 2658817 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532; general secretion pathway protein G 2658362..2658817 Hyphomonas neptunium ATCC 15444 4289851 YP_761211.1 CDS HNE_2517 NC_008358.1 2658829 2660451 D identified by match to protein family HMM PF00437; type II secretion system protein 2658829..2660451 Hyphomonas neptunium ATCC 15444 4287548 YP_761212.1 CDS HNE_2518 NC_008358.1 2660448 2661635 D identified by match to protein family HMM PF00482; type II secretion system protein F 2660448..2661635 Hyphomonas neptunium ATCC 15444 4288989 YP_761213.1 CDS HNE_2519 NC_008358.1 2661632 2662006 D hypothetical protein 2661632..2662006 Hyphomonas neptunium ATCC 15444 4287971 YP_761214.1 CDS HNE_2520 NC_008358.1 2661996 2662319 D hypothetical protein 2661996..2662319 Hyphomonas neptunium ATCC 15444 4287854 YP_761215.1 CDS HNE_2521 NC_008358.1 2662316 2663248 D identified by match to protein family HMM PF05137; pilN family protein 2662316..2663248 Hyphomonas neptunium ATCC 15444 4290526 YP_761216.1 CDS HNE_2522 NC_008358.1 2663245 2663796 D hypothetical protein 2663245..2663796 Hyphomonas neptunium ATCC 15444 4290356 YP_761217.1 CDS HNE_2523 NC_008358.1 2663793 2664281 D hypothetical protein 2663793..2664281 Hyphomonas neptunium ATCC 15444 4289042 YP_761218.1 CDS HNE_2524 NC_008358.1 2664788 2665861 R identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; RHS/YD repeat-containing protein complement(2664788..2665861) Hyphomonas neptunium ATCC 15444 4290305 YP_761219.1 CDS HNE_2525 NC_008358.1 2667519 2669489 D hypothetical protein 2667519..2669489 Hyphomonas neptunium ATCC 15444 4288800 YP_761220.1 CDS HNE_2526 NC_008358.1 2669587 2672052 D identified by similarity to SP:Q07833; match to protein family HMM PF05593; match to protein family HMM TIGR01643; putative wall-associated protein 2669587..2672052 Hyphomonas neptunium ATCC 15444 4288566 YP_761221.1 CDS HNE_2527 NC_008358.1 2672326 2672724 R hypothetical protein complement(2672326..2672724) Hyphomonas neptunium ATCC 15444 4287660 YP_761222.1 CDS HNE_2528 NC_008358.1 2672785 2673138 R identified by similarity to GB:BAC46141.1; hypothetical protein complement(2672785..2673138) Hyphomonas neptunium ATCC 15444 4288264 YP_761223.1 CDS HNE_2529 NC_008358.1 2673229 2674806 D identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase family site-specific recombinase 2673229..2674806 Hyphomonas neptunium ATCC 15444 4287174 YP_761224.1 CDS HNE_2530 NC_008358.1 2674803 2675714 D identified by match to protein family HMM PF02195; match to protein family HMM PF07506; ParB family protein 2674803..2675714 Hyphomonas neptunium ATCC 15444 4290382 YP_761225.1 CDS HNE_2531 NC_008358.1 2675711 2676625 D identified by match to protein family HMM PF02195; match to protein family HMM PF07506; ParB family protein 2675711..2676625 Hyphomonas neptunium ATCC 15444 4290405 YP_761226.1 CDS HNE_2532 NC_008358.1 2676631 2681778 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00580; match to protein family HMM TIGR00614; ATP-dependent DNA helicase domain-containing protein complement(2676631..2681778) Hyphomonas neptunium ATCC 15444 4287080 YP_761227.1 CDS HNE_2533 NC_008358.1 2681872 2682903 R hypothetical protein complement(2681872..2682903) Hyphomonas neptunium ATCC 15444 4289724 YP_761228.1 CDS HNE_2534 NC_008358.1 2683173 2683553 D identified by match to protein family HMM PF01381; DNA-binding protein 2683173..2683553 Hyphomonas neptunium ATCC 15444 4288006 YP_761229.1 CDS HNE_2536 NC_008358.1 2684198 2684530 D hypothetical protein 2684198..2684530 Hyphomonas neptunium ATCC 15444 4288473 YP_761230.1 CDS HNE_2537 NC_008358.1 2686587 2687609 R hypothetical protein complement(2686587..2687609) Hyphomonas neptunium ATCC 15444 4289102 YP_761231.1 CDS HNE_2538 NC_008358.1 2687558 2688124 R identified by match to protein family HMM PF06508; hypothetical protein complement(2687558..2688124) Hyphomonas neptunium ATCC 15444 4290403 YP_761232.1 CDS HNE_2539 NC_008358.1 2689150 2692554 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; type I restriction-modification system, R subunit complement(2689150..2692554) Hyphomonas neptunium ATCC 15444 4288644 YP_761233.1 CDS HNE_2540 NC_008358.1 2692551 2693492 R identified by similarity to GB:AAM05802.1; hypothetical protein complement(2692551..2693492) Hyphomonas neptunium ATCC 15444 4290459 YP_761234.1 CDS HNE_2541 NC_008358.1 2693495 2694640 R identified by match to protein family HMM PF01420; type I restriction-modification system subunit S complement(2693495..2694640) Hyphomonas neptunium ATCC 15444 4287251 YP_761235.1 CDS HNE_2542 NC_008358.1 2694637 2696178 R identified by match to protein family HMM PF01170; match to protein family HMM PF02384; type I restriction-modification system, M subunit complement(2694637..2696178) Hyphomonas neptunium ATCC 15444 4287827 YP_761236.1 CDS HNE_2543 NC_008358.1 2696432 2696641 R identified by match to protein family HMM PF01381; DNA-binding protein complement(2696432..2696641) Hyphomonas neptunium ATCC 15444 4288254 YP_761237.1 CDS HNE_2544 NC_008358.1 2696760 2697359 D putative lipoprotein 2696760..2697359 Hyphomonas neptunium ATCC 15444 4290121 YP_761238.1 CDS HNE_2545 NC_008358.1 2697509 2698861 D identified by match to protein family HMM PF01555; match to protein family HMM PF02195; DNA methylase 2697509..2698861 Hyphomonas neptunium ATCC 15444 4290373 YP_761239.1 CDS HNE_2546 NC_008358.1 2698858 2699253 D hypothetical protein 2698858..2699253 Hyphomonas neptunium ATCC 15444 4289683 YP_761240.1 CDS HNE_2547 NC_008358.1 2699243 2700667 D identified by similarity to PIR:H97760; match to protein family HMM TIGR01630; hypothetical protein 2699243..2700667 Hyphomonas neptunium ATCC 15444 4287391 YP_761241.1 CDS HNE_2548 NC_008358.1 2700935 2701300 R identified by similarity to GB:BAD02109.1; hypothetical protein complement(2700935..2701300) Hyphomonas neptunium ATCC 15444 4290223 YP_761242.1 CDS HNE_2549 NC_008358.1 2701302 2702693 R identified by match to protein family HMM PF00899; ThiF family protein complement(2701302..2702693) Hyphomonas neptunium ATCC 15444 4288096 YP_761243.1 CDS HNE_2550 NC_008358.1 2702693 2703586 R hypothetical protein complement(2702693..2703586) Hyphomonas neptunium ATCC 15444 4288772 YP_761244.1 CDS HNE_2551 NC_008358.1 2703617 2707030 R identified by match to protein family HMM PF00580; match to protein family HMM PF06114; UvrD/REP helicase domain-containing protein complement(2703617..2707030) Hyphomonas neptunium ATCC 15444 4289181 YP_761245.1 CDS HNE_2552 NC_008358.1 2707017 2707517 R hypothetical protein complement(2707017..2707517) Hyphomonas neptunium ATCC 15444 4288042 YP_761246.1 CDS HNE_2553 NC_008358.1 2707555 2708373 R hypothetical protein complement(2707555..2708373) Hyphomonas neptunium ATCC 15444 4287250 YP_761247.1 CDS HNE_2554 NC_008358.1 2709175 2709429 D hypothetical protein 2709175..2709429 Hyphomonas neptunium ATCC 15444 4287853 YP_761248.1 CDS HNE_2555 NC_008358.1 2709453 2709830 D identified by similarity to GB:CAD86452.1; hypothetical protein 2709453..2709830 Hyphomonas neptunium ATCC 15444 4288222 YP_761249.1 CDS HNE_2556 NC_008358.1 2709830 2711485 D identified by match to protein family HMM PF00239; match to protein family HMM PF07508; resolvase family site-specific recombinase 2709830..2711485 Hyphomonas neptunium ATCC 15444 4287493 YP_761250.1 CDS HNE_2558 NC_008358.1 2712150 2713379 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; putative diguanylate cyclase 2712150..2713379 Hyphomonas neptunium ATCC 15444 4289027 YP_761251.1 CDS rplU NC_008358.1 2713575 2714192 D fusion of ribosomal protein L21 and COG3743; 50S ribosomal protein L21 2713575..2714192 Hyphomonas neptunium ATCC 15444 4290417 YP_761252.1 CDS rpmA NC_008358.1 2714229 2714498 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2714229..2714498 Hyphomonas neptunium ATCC 15444 4287938 YP_761253.1 CDS HNE_2561 NC_008358.1 2714644 2715174 D identified by match to protein family HMM PF00583; acetyltransferase 2714644..2715174 Hyphomonas neptunium ATCC 15444 4289132 YP_761254.1 CDS obgE NC_008358.1 2715194 2716264 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2715194..2716264 Hyphomonas neptunium ATCC 15444 4288490 YP_761255.1 CDS HNE_2563 NC_008358.1 2716377 2717135 R hypothetical protein complement(2716377..2717135) Hyphomonas neptunium ATCC 15444 4287412 YP_761256.1 CDS HNE_2564 NC_008358.1 2717168 2717320 R hypothetical protein complement(2717168..2717320) Hyphomonas neptunium ATCC 15444 4289106 YP_761257.1 CDS HNE_2565 NC_008358.1 2717450 2719018 D identified by match to protein family HMM PF00486; match to protein family HMM PF00515; match to protein family HMM PF07721; hypothetical protein 2717450..2719018 Hyphomonas neptunium ATCC 15444 4290102 YP_761258.1 CDS HNE_2566 NC_008358.1 2719034 2719729 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(2719034..2719729) Hyphomonas neptunium ATCC 15444 4289034 YP_761259.1 CDS proB NC_008358.1 2720158 2721273 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 2720158..2721273 Hyphomonas neptunium ATCC 15444 4287015 YP_761260.1 CDS HNE_2568 NC_008358.1 2721270 2721743 D identified by match to protein family HMM PF00583; acetyltransferase 2721270..2721743 Hyphomonas neptunium ATCC 15444 4288814 YP_761261.1 CDS HNE_2569 NC_008358.1 2721740 2723209 D alpha-L-glutamate ligase 2721740..2723209 Hyphomonas neptunium ATCC 15444 4290529 YP_761262.1 CDS vlacs NC_008358.1 2723343 2725133 R activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase complement(2723343..2725133) Hyphomonas neptunium ATCC 15444 4289322 YP_761263.1 CDS HNE_2571 NC_008358.1 2725323 2726207 D identified by match to protein family HMM PF02551; acyl-CoA thioesterase II 2725323..2726207 Hyphomonas neptunium ATCC 15444 4287638 YP_761264.1 CDS HNE_2572 NC_008358.1 2726276 2727292 R identified by match to protein family HMM PF00165; AraC family transcriptional regulator complement(2726276..2727292) Hyphomonas neptunium ATCC 15444 4289297 YP_761265.1 CDS HNE_2574 NC_008358.1 2727727 2728035 D identified by similarity to SP:Q02375; match to protein family HMM PF04800; putative NADH-quinone oxidoreductase 2727727..2728035 Hyphomonas neptunium ATCC 15444 4288115 YP_761266.1 CDS HNE_2576 NC_008358.1 2728407 2729345 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 2728407..2729345 Hyphomonas neptunium ATCC 15444 4288888 YP_761267.1 CDS nadE NC_008358.1 2730114 2731781 D identified by match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD(+) synthetase 2730114..2731781 Hyphomonas neptunium ATCC 15444 4286990 YP_761268.1 CDS HNE_2578 NC_008358.1 2731786 2732610 R putative lipoprotein complement(2731786..2732610) Hyphomonas neptunium ATCC 15444 4290323 YP_761269.1 CDS gltX2 NC_008358.1 2732741 2734078 D identified by match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase 2732741..2734078 Hyphomonas neptunium ATCC 15444 4288956 YP_761270.1 CDS HNE_2580 NC_008358.1 2734083 2735192 R putative lipoprotein complement(2734083..2735192) Hyphomonas neptunium ATCC 15444 4289963 YP_761271.1 CDS HNE_2581 NC_008358.1 2735280 2735675 R identified by match to protein family HMM PF01152; hypothetical protein complement(2735280..2735675) Hyphomonas neptunium ATCC 15444 4287413 YP_761272.1 CDS HNE_2582 NC_008358.1 2735781 2736656 R hypothetical protein complement(2735781..2736656) Hyphomonas neptunium ATCC 15444 4289400 YP_761273.1 CDS HNE_2583 NC_008358.1 2736776 2737396 D hypothetical protein 2736776..2737396 Hyphomonas neptunium ATCC 15444 4287766 YP_761274.1 CDS HNE_2584 NC_008358.1 2737386 2739632 D identified by match to protein family HMM PF00563; match to protein family HMM PF00672; putative diguanylate cyclase 2737386..2739632 Hyphomonas neptunium ATCC 15444 4287903 YP_761275.1 CDS HNE_2585 NC_008358.1 2739752 2740234 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 2739752..2740234 Hyphomonas neptunium ATCC 15444 4288870 YP_761276.1 CDS HNE_2586 NC_008358.1 2740253 2742520 R identified by match to protein family HMM PF01042; match to protein family HMM PF01979; amidohydrolase complement(2740253..2742520) Hyphomonas neptunium ATCC 15444 4288554 YP_761277.1 CDS HNE_2587 NC_008358.1 2742745 2744256 R identified by match to protein family HMM PF00450; serine carboxypeptidase family protein complement(2742745..2744256) Hyphomonas neptunium ATCC 15444 4289479 YP_761278.1 CDS HNE_2588 NC_008358.1 2744432 2745688 D identified by match to protein family HMM PF00266; class V aminotransferase 2744432..2745688 Hyphomonas neptunium ATCC 15444 4288155 YP_761279.1 CDS HNE_2589 NC_008358.1 2745693 2747276 R identified by match to protein family HMM PF00450; serine carboxypeptidase family protein complement(2745693..2747276) Hyphomonas neptunium ATCC 15444 4289991 YP_761280.1 CDS HNE_2590 NC_008358.1 2747273 2748232 R identified by match to protein family HMM PF01488; match to protein family HMM PF02423; ornithine cyclodeaminase/mu-crystallin family protein complement(2747273..2748232) Hyphomonas neptunium ATCC 15444 4289204 YP_761281.1 CDS HNE_2591 NC_008358.1 2748229 2749764 R identified by match to protein family HMM PF00450; serine carboxypeptidase family protein complement(2748229..2749764) Hyphomonas neptunium ATCC 15444 4289607 YP_761282.1 CDS HNE_2592 NC_008358.1 2749813 2752827 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(2749813..2752827) Hyphomonas neptunium ATCC 15444 4290220 YP_761283.1 CDS HNE_2593 NC_008358.1 2753020 2754342 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(2753020..2754342) Hyphomonas neptunium ATCC 15444 4288960 YP_761284.1 CDS HNE_2594 NC_008358.1 2754353 2755462 R identified by match to protein family HMM PF00155; classes I and II aminotransferase complement(2754353..2755462) Hyphomonas neptunium ATCC 15444 4287245 YP_761285.1 CDS HNE_2595 NC_008358.1 2755568 2755687 R hypothetical protein complement(2755568..2755687) Hyphomonas neptunium ATCC 15444 4287052 YP_761286.1 CDS HNE_2596 NC_008358.1 2755745 2757361 R putative lipoprotein complement(2755745..2757361) Hyphomonas neptunium ATCC 15444 4287904 YP_761287.1 CDS HNE_2597 NC_008358.1 2757583 2759352 D putative lipoprotein 2757583..2759352 Hyphomonas neptunium ATCC 15444 4288179 YP_761288.1 CDS HNE_2598 NC_008358.1 2759373 2762231 R identified by match to protein family HMM PF00501; AMP-binding protein complement(2759373..2762231) Hyphomonas neptunium ATCC 15444 4289178 YP_761289.1 CDS HNE_2600 NC_008358.1 2762591 2763055 R identified by match to protein family HMM PF01638; hypothetical protein complement(2762591..2763055) Hyphomonas neptunium ATCC 15444 4289766 YP_761290.1 CDS HNE_2601 NC_008358.1 2763315 2764325 D identified by similarity to GB:AAK22656.1; hypothetical protein 2763315..2764325 Hyphomonas neptunium ATCC 15444 4287285 YP_761291.1 CDS HNE_2602 NC_008358.1 2764585 2765208 D identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase 2764585..2765208 Hyphomonas neptunium ATCC 15444 4287936 YP_761292.1 CDS HNE_2603 NC_008358.1 2765490 2766284 D identified by similarity to SP:P04957; match to protein family HMM PF00722; putative licheninase 2765490..2766284 Hyphomonas neptunium ATCC 15444 4288633 YP_761293.1 CDS HNE_2604 NC_008358.1 2766274 2766603 R identified by match to protein family HMM PF07345; hypothetical protein complement(2766274..2766603) Hyphomonas neptunium ATCC 15444 4287582 YP_761294.1 CDS purC NC_008358.1 2766786 2767565 D identified by match to protein family HMM PF01259; match to protein family HMM TIGR00081; phosphoribosylaminoimidazole-succinocarboxamide synthase 2766786..2767565 Hyphomonas neptunium ATCC 15444 4288259 YP_761295.1 CDS purS NC_008358.1 2767565 2767807 D identified by match to protein family HMM PF02700; match to protein family HMM TIGR00302; phosphoribosylformylglycinamidine synthase PurS 2767565..2767807 Hyphomonas neptunium ATCC 15444 4290158 YP_761296.1 CDS HNE_2607 NC_008358.1 2767979 2768662 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 2767979..2768662 Hyphomonas neptunium ATCC 15444 4289251 YP_761297.1 CDS HNE_2608 NC_008358.1 2768689 2769495 D identified by similarity to GB:AAD38301.1; match to protein family HMM PF01553; acyltransferase family protein 2768689..2769495 Hyphomonas neptunium ATCC 15444 4287681 YP_761298.1 CDS HNE_2609 NC_008358.1 2769593 2769907 D identified by similarity to SP:P30743; match to protein family HMM PF00893; quaternary ammonium compound-resistance protein SugE 2769593..2769907 Hyphomonas neptunium ATCC 15444 4289557 YP_761299.1 CDS HNE_2610 NC_008358.1 2770555 2770752 D hypothetical protein 2770555..2770752 Hyphomonas neptunium ATCC 15444 4287879 YP_761300.1 CDS HNE_2611 NC_008358.1 2770755 2771243 R identified by similarity to GB:CAE36672.1; hypothetical protein complement(2770755..2771243) Hyphomonas neptunium ATCC 15444 4289229 YP_761301.1 CDS iscA NC_008358.1 2771264 2771623 R identified by similarity to PDB:1R94_A; match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein complement(2771264..2771623) Hyphomonas neptunium ATCC 15444 4289870 YP_761302.1 CDS HNE_2613 NC_008358.1 2771659 2772042 R identified by similarity to GB:AAN29861.1; match to protein family HMM PF01883; match to protein family HMM TIGR02945; hypothetical protein complement(2771659..2772042) Hyphomonas neptunium ATCC 15444 4287322 YP_761303.1 CDS HNE_2614 NC_008358.1 2772051 2773274 R identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979; SufS family cysteine desulfurase complement(2772051..2773274) Hyphomonas neptunium ATCC 15444 4289249 YP_761304.1 CDS sufD NC_008358.1 2773279 2774484 R identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981; FeS assembly protein SufD complement(2773279..2774484) Hyphomonas neptunium ATCC 15444 4289418 YP_761305.1 CDS sufC NC_008358.1 2774502 2775263 R identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978; FeS assembly ATPase SufC complement(2774502..2775263) Hyphomonas neptunium ATCC 15444 4288359 YP_761306.1 CDS HNE_2617 NC_008358.1 2775364 2775492 R hypothetical protein complement(2775364..2775492) Hyphomonas neptunium ATCC 15444 4288878 YP_761307.1 CDS HNE_2618 NC_008358.1 2775533 2776252 R putative lipoprotein complement(2775533..2776252) Hyphomonas neptunium ATCC 15444 4288527 YP_761308.1 CDS sufB NC_008358.1 2776350 2777864 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(2776350..2777864) Hyphomonas neptunium ATCC 15444 4287205 YP_761309.1 CDS HNE_2620 NC_008358.1 2777912 2779114 R identified by match to protein family HMM PF00266; class-V pyridoxal-phosphate-dependent aminotransferase complement(2777912..2779114) Hyphomonas neptunium ATCC 15444 4289485 YP_761310.1 CDS HNE_2621 NC_008358.1 2779173 2779892 D identified by similarity to GB:AAK23842.1; hypothetical protein 2779173..2779892 Hyphomonas neptunium ATCC 15444 4289723 YP_761311.1 CDS HNE_2622 NC_008358.1 2779957 2780436 D identified by match to protein family HMM PF00583; acetyltransferase 2779957..2780436 Hyphomonas neptunium ATCC 15444 4288623 YP_761312.1 CDS HNE_2623 NC_008358.1 2780643 2781818 D identified by match to protein family HMM PF00665; ISHne2, transposase 2780643..2781818 Hyphomonas neptunium ATCC 15444 4287223 YP_761313.1 CDS anmK NC_008358.1 2782009 2783172 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(2782009..2783172) Hyphomonas neptunium ATCC 15444 4287409 YP_761314.1 CDS tyrS NC_008358.1 2783188 2784438 D identified by match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase 2783188..2784438 Hyphomonas neptunium ATCC 15444 4290150 YP_761315.1 CDS HNE_2626 NC_008358.1 2784446 2787814 R hypothetical protein complement(2784446..2787814) Hyphomonas neptunium ATCC 15444 4289058 YP_761316.1 CDS bcp NC_008358.1 2787933 2788406 D identified by match to protein family HMM PF00578; bacterioferritin comigratory protein 2787933..2788406 Hyphomonas neptunium ATCC 15444 4287389 YP_761317.1 CDS HNE_2628 NC_008358.1 2788610 2789827 D identified by match to protein family HMM PF01551; M23 family peptidase 2788610..2789827 Hyphomonas neptunium ATCC 15444 4287702 YP_761318.1 CDS HNE_2629 NC_008358.1 2789811 2790353 D identified by match to protein family HMM PF04519; putative lipoprotein 2789811..2790353 Hyphomonas neptunium ATCC 15444 4287727 YP_761319.1 CDS HNE_2630 NC_008358.1 2790639 2792042 R hypothetical protein complement(2790639..2792042) Hyphomonas neptunium ATCC 15444 4289390 YP_761320.1 CDS HNE_2631 NC_008358.1 2792178 2792783 R identified by match to protein family HMM TIGR01352; TonB family protein complement(2792178..2792783) Hyphomonas neptunium ATCC 15444 4287348 YP_761321.1 CDS HNE_2632 NC_008358.1 2792813 2793232 R identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472; putative TonB system transport protein ExbD complement(2792813..2793232) Hyphomonas neptunium ATCC 15444 4289613 YP_761322.1 CDS HNE_2633 NC_008358.1 2793243 2793659 R identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472; putative TonB system transport protein ExbD complement(2793243..2793659) Hyphomonas neptunium ATCC 15444 4289466 YP_761323.1 CDS HNE_2634 NC_008358.1 2793659 2794168 R identified by similarity to GB:AAC69454.1; match to protein family HMM PF01618; putative TonB system transport protein ExbB complement(2793659..2794168) Hyphomonas neptunium ATCC 15444 4288586 YP_761324.1 CDS HNE_2635 NC_008358.1 2794204 2795598 R identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein complement(2794204..2795598) Hyphomonas neptunium ATCC 15444 4288049 YP_761325.1 CDS HNE_2636 NC_008358.1 2795634 2796401 R hypothetical protein complement(2795634..2796401) Hyphomonas neptunium ATCC 15444 4288494 YP_761326.1 CDS sppA NC_008358.1 2797242 2799020 D identified by match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 67K type 2797242..2799020 Hyphomonas neptunium ATCC 15444 4290138 YP_761327.1 CDS HNE_2639 NC_008358.1 2799146 2800150 D identified by similarity to SP:O54067; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; UDP-glucuronate 5'-epimerase 2799146..2800150 Hyphomonas neptunium ATCC 15444 4289771 YP_761328.1 CDS HNE_2640 NC_008358.1 2800132 2800866 R identified by match to protein family HMM PF00849; pseudouridine synthase family protein complement(2800132..2800866) Hyphomonas neptunium ATCC 15444 4289628 YP_761329.1 CDS HNE_2641 NC_008358.1 2800863 2801747 R identified by match to protein family HMM PF01636; phosphotransferase family protein complement(2800863..2801747) Hyphomonas neptunium ATCC 15444 4288582 YP_761330.1 CDS HNE_2642 NC_008358.1 2801740 2803050 R identified by match to protein family HMM PF00004; recombination factor protein RarA complement(2801740..2803050) Hyphomonas neptunium ATCC 15444 4287941 YP_761331.1 CDS HNE_2643 NC_008358.1 2803111 2803947 D identified by match to protein family HMM PF02668; TauD/TfdA family dioxygenase 2803111..2803947 Hyphomonas neptunium ATCC 15444 4290243 YP_761332.1 CDS HNE_2644 NC_008358.1 2804024 2805445 R identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Do family protease complement(2804024..2805445) Hyphomonas neptunium ATCC 15444 4287676 YP_761333.1 CDS HNE_2645 NC_008358.1 2805577 2807022 R major facilitator transporter complement(2805577..2807022) Hyphomonas neptunium ATCC 15444 4288240 YP_761334.1 CDS HNE_2646 NC_008358.1 2807061 2808284 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(2807061..2808284) Hyphomonas neptunium ATCC 15444 4287430 YP_761335.1 CDS HNE_2647 NC_008358.1 2808299 2808589 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein complement(2808299..2808589) Hyphomonas neptunium ATCC 15444 4288296 YP_761336.1 CDS HNE_2648 NC_008358.1 2808790 2809815 D identified by similarity to SP:P33691; match to protein family HMM PF00535; putative glycosyl transferase ExoA 2808790..2809815 Hyphomonas neptunium ATCC 15444 4290020 YP_761337.1 CDS HNE_2649 NC_008358.1 2809997 2810812 D identified by similarity to GB:AAC46052.1; match to protein family HMM PF00149; serine/threonine protein phosphatase family protein 2809997..2810812 Hyphomonas neptunium ATCC 15444 4288211 YP_761338.1 CDS HNE_2650 NC_008358.1 2810878 2811465 D identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export protein 2810878..2811465 Hyphomonas neptunium ATCC 15444 4290439 YP_761339.1 CDS HNE_2651 NC_008358.1 2811811 2812506 D identified by similarity to SP:Q02731; match to protein family HMM PF02397; sugar transferase 2811811..2812506 Hyphomonas neptunium ATCC 15444 4289824 YP_761340.1 CDS HNE_2652 NC_008358.1 2812658 2813542 D identified by similarity to SP:P37073; match to protein family HMM PF00722; putative licheninase 2812658..2813542 Hyphomonas neptunium ATCC 15444 4289224 YP_761341.1 CDS gspO NC_008358.1 2813620 2814276 D identified by similarity to SP:P25960; match to protein family HMM PF01478; prepilin peptidase 2813620..2814276 Hyphomonas neptunium ATCC 15444 4287100 YP_761342.1 CDS HNE_2660 NC_008358.1 2820695 2821129 R identified by match to protein family HMM PF00571; hypothetical protein complement(2820695..2821129) Hyphomonas neptunium ATCC 15444 4287219 YP_761343.1 CDS HNE_2661 NC_008358.1 2821244 2821957 R identified by match to protein family HMM PF01694; S54 family peptidase complement(2821244..2821957) Hyphomonas neptunium ATCC 15444 4289163 YP_761344.1 CDS HNE_2662 NC_008358.1 2822511 2825147 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; outer membrane receptor (OMR) family protein complement(2822511..2825147) Hyphomonas neptunium ATCC 15444 4287305 YP_761345.1 CDS HNE_2663 NC_008358.1 2825506 2826045 D hypothetical protein 2825506..2826045 Hyphomonas neptunium ATCC 15444 4288622 YP_761346.1 CDS higA NC_008358.1 2826189 2826482 R identified by similarity to SP:Q46560; match to protein family HMM PF01381; match to protein family HMM TIGR02607; addiction module antidote protein complement(2826189..2826482) Hyphomonas neptunium ATCC 15444 4289762 YP_761347.1 CDS HNE_2665 NC_008358.1 2826495 2826776 R identified by match to protein family HMM PF05015; plasmid maintenance system killer protein complement(2826495..2826776) Hyphomonas neptunium ATCC 15444 4288597 YP_761348.1 CDS betA NC_008358.1 2826826 2828463 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(2826826..2828463) Hyphomonas neptunium ATCC 15444 4287156 YP_761349.1 CDS HNE_2667 NC_008358.1 2828637 2829248 D hypothetical protein 2828637..2829248 Hyphomonas neptunium ATCC 15444 4290151 YP_761350.1 CDS HNE_2668 NC_008358.1 2829309 2829839 R identified by match to protein family HMM PF00132; hexapaptide repeat-containing transferase complement(2829309..2829839) Hyphomonas neptunium ATCC 15444 4289863 YP_761351.1 CDS HNE_2669 NC_008358.1 2830103 2830912 D identified by match to protein family HMM PF02562; PhoH family protein 2830103..2830912 Hyphomonas neptunium ATCC 15444 4290115 YP_761352.1 CDS HNE_2670 NC_008358.1 2831030 2832100 D identified by similarity to GB:AAS71125.1; putative lipoprotein 2831030..2832100 Hyphomonas neptunium ATCC 15444 4290367 YP_761353.1 CDS apaG NC_008358.1 2832120 2832536 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(2832120..2832536) Hyphomonas neptunium ATCC 15444 4288594 YP_761354.1 CDS metZ NC_008358.1 2832562 2833761 R identified by similarity to SP:P55218; match to protein family HMM PF00155; match to protein family HMM PF01053; match to protein family HMM TIGR01325; O-succinylhomoserine sulfhydrylase complement(2832562..2833761) Hyphomonas neptunium ATCC 15444 4288341 YP_761355.1 CDS HNE_2673 NC_008358.1 2833832 2834839 D Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 2833832..2834839 Hyphomonas neptunium ATCC 15444 4288278 YP_761356.1 CDS HNE_2674 NC_008358.1 2834940 2836496 R identified by match to protein family HMM PF00324; amino acid transporter complement(2834940..2836496) Hyphomonas neptunium ATCC 15444 4288805 YP_761357.1 CDS HNE_2675 NC_008358.1 2836782 2837096 D hypothetical protein 2836782..2837096 Hyphomonas neptunium ATCC 15444 4287804 YP_761358.1 CDS HNE_2676 NC_008358.1 2837112 2837795 D hypothetical protein 2837112..2837795 Hyphomonas neptunium ATCC 15444 4288242 YP_761359.1 CDS HNE_2677 NC_008358.1 2837792 2838541 R identified by match to protein family HMM PF04338; hypothetical protein complement(2837792..2838541) Hyphomonas neptunium ATCC 15444 4287614 YP_761360.1 CDS HNE_2678 NC_008358.1 2838601 2839332 R identified by similarity to GB:BAB48250.1; match to protein family HMM PF00227; T1A family peptidase complement(2838601..2839332) Hyphomonas neptunium ATCC 15444 4289964 YP_761361.1 CDS HNE_2679 NC_008358.1 2839357 2840160 R identified by match to protein family HMM PF01841; transglutaminase family protein complement(2839357..2840160) Hyphomonas neptunium ATCC 15444 4288762 YP_761362.1 CDS HNE_2680 NC_008358.1 2840171 2841112 R identified by similarity to PIR:AB2864; match to protein family HMM PF04168; hypothetical protein complement(2840171..2841112) Hyphomonas neptunium ATCC 15444 4288018 YP_761363.1 CDS HNE_2681 NC_008358.1 2841117 2842544 R identified by similarity to PIR:D95989; match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein complement(2841117..2842544) Hyphomonas neptunium ATCC 15444 4289654 YP_761364.1 CDS HNE_2682 NC_008358.1 2842669 2844495 R identified by match to protein family HMM PF02080; TrkA domain-containing protein complement(2842669..2844495) Hyphomonas neptunium ATCC 15444 4287534 YP_761365.1 CDS HNE_2684 NC_008358.1 2844834 2845994 D identified by match to protein family HMM PF01757; acyltransferase family protein 2844834..2845994 Hyphomonas neptunium ATCC 15444 4289903 YP_761366.1 CDS HNE_2686 NC_008358.1 2846253 2847062 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; RNA methyltransferase 2846253..2847062 Hyphomonas neptunium ATCC 15444 4288476 YP_761367.1 CDS HNE_2687 NC_008358.1 2847083 2847790 R hypothetical protein complement(2847083..2847790) Hyphomonas neptunium ATCC 15444 4290003 YP_761368.1 CDS HNE_2688 NC_008358.1 2848086 2848790 R hypothetical protein complement(2848086..2848790) Hyphomonas neptunium ATCC 15444 4290016 YP_761369.1 CDS HNE_2689 NC_008358.1 2848958 2849584 D hypothetical protein 2848958..2849584 Hyphomonas neptunium ATCC 15444 4288600 YP_761370.1 CDS mmgC NC_008358.1 2849597 2850769 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2849597..2850769) Hyphomonas neptunium ATCC 15444 4289212 YP_761371.1 CDS HNE_2691 NC_008358.1 2850826 2851992 R identified by similarity to SP:O31616; match to protein family HMM PF01266; putative glycine oxidase complement(2850826..2851992) Hyphomonas neptunium ATCC 15444 4289078 YP_761372.1 CDS HNE_2692 NC_008358.1 2852033 2852452 R hypothetical protein complement(2852033..2852452) Hyphomonas neptunium ATCC 15444 4289155 YP_761373.1 CDS HNE_2693 NC_008358.1 2852529 2853620 D identified by match to protein family HMM PF01547; iron ABC transporter substrate-binding protein 2852529..2853620 Hyphomonas neptunium ATCC 15444 4289535 YP_761374.1 CDS HNE_2694 NC_008358.1 2853656 2855221 D identified by match to protein family HMM PF00528; ABC transporter permease 2853656..2855221 Hyphomonas neptunium ATCC 15444 4290421 YP_761375.1 CDS HNE_2695 NC_008358.1 2855218 2856225 D identified by match to protein family HMM PF00005; iron ABC transporter ATP-binding protein 2855218..2856225 Hyphomonas neptunium ATCC 15444 4287284 YP_761376.1 CDS HNE_2696 NC_008358.1 2856317 2857753 D identified by match to protein family HMM PF01435; M48 family peptidase 2856317..2857753 Hyphomonas neptunium ATCC 15444 4288716 YP_761377.1 CDS HNE_2697 NC_008358.1 2857851 2858591 D identified by similarity to PIR:A49232; match to protein family HMM PF01323; outer membrane protein 2857851..2858591 Hyphomonas neptunium ATCC 15444 4289081 YP_761378.1 CDS HNE_2698 NC_008358.1 2858592 2859554 R identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(2858592..2859554) Hyphomonas neptunium ATCC 15444 4288471 YP_761379.1 CDS HNE_2699 NC_008358.1 2859671 2860105 R identified by match to protein family HMM PF00472; peptidyl-tRNA hydrolase domain-containing protein complement(2859671..2860105) Hyphomonas neptunium ATCC 15444 4287049 YP_761380.1 CDS HNE_2700 NC_008358.1 2860243 2860767 D hypothetical protein 2860243..2860767 Hyphomonas neptunium ATCC 15444 4290106 YP_761381.1 CDS HNE_2701 NC_008358.1 2860940 2861338 D identified by match to protein family HMM PF00293; NUDIX family NudH subfamily hydrolase 2860940..2861338 Hyphomonas neptunium ATCC 15444 4288125 YP_761382.1 CDS HNE_2702 NC_008358.1 2861558 2861665 R hypothetical protein complement(2861558..2861665) Hyphomonas neptunium ATCC 15444 4289928 YP_761383.1 CDS HNE_2703 NC_008358.1 2861665 2862795 D putative lipoprotein 2861665..2862795 Hyphomonas neptunium ATCC 15444 4288404 YP_761384.1 CDS HNE_2704 NC_008358.1 2862820 2864466 D hypothetical protein 2862820..2864466 Hyphomonas neptunium ATCC 15444 4289142 YP_761385.1 CDS pckA NC_008358.1 2864742 2866334 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2864742..2866334 Hyphomonas neptunium ATCC 15444 4286983 YP_761386.1 CDS HNE_2706 NC_008358.1 2866498 2867706 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acyltransferase/thiolase family protein 2866498..2867706 Hyphomonas neptunium ATCC 15444 4290375 YP_761387.1 CDS HNE_2707 NC_008358.1 2867863 2868606 D identified by similarity to GB:CAB45042.1; putative lipoprotein 2867863..2868606 Hyphomonas neptunium ATCC 15444 4288022 YP_761388.1 CDS HNE_2708 NC_008358.1 2868611 2869129 D putative lipoprotein 2868611..2869129 Hyphomonas neptunium ATCC 15444 4287428 YP_761389.1 CDS HNE_2709 NC_008358.1 2869281 2870369 D hypothetical protein 2869281..2870369 Hyphomonas neptunium ATCC 15444 4287405 YP_761390.1 CDS HNE_2710 NC_008358.1 2870366 2871316 R identified by match to protein family HMM PF00581; rhodanese domain-containing protein complement(2870366..2871316) Hyphomonas neptunium ATCC 15444 4287025 YP_761391.1 CDS HNE_2711 NC_008358.1 2872092 2872583 D identified by similarity to GB:CAE38612.1; hypothetical protein 2872092..2872583 Hyphomonas neptunium ATCC 15444 4290333 YP_761392.1 CDS HNE_2712 NC_008358.1 2872665 2874557 R identified by similarity to GB:AAM36379.1; hypothetical protein complement(2872665..2874557) Hyphomonas neptunium ATCC 15444 4287790 YP_761393.1 CDS ispH NC_008358.1 2874605 2875552 R identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase complement(2874605..2875552) Hyphomonas neptunium ATCC 15444 4289089 YP_761394.1 CDS HNE_2714 NC_008358.1 2875581 2876252 D hypothetical protein 2875581..2876252 Hyphomonas neptunium ATCC 15444 4288720 YP_761395.1 CDS argS NC_008358.1 2876256 2878025 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2876256..2878025 Hyphomonas neptunium ATCC 15444 4289313 YP_761396.1 CDS HNE_2716 NC_008358.1 2878667 2879836 D hypothetical protein 2878667..2879836 Hyphomonas neptunium ATCC 15444 4287986 YP_761397.1 CDS HNE_2717 NC_008358.1 2879936 2881000 D identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein 2879936..2881000 Hyphomonas neptunium ATCC 15444 4287317 YP_761398.1 CDS HNE_2718 NC_008358.1 2881130 2881906 D hypothetical protein 2881130..2881906 Hyphomonas neptunium ATCC 15444 4289616 YP_761399.1 CDS gcvT NC_008358.1 2882197 2883351 D identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528; glycine cleavage system T protein 2882197..2883351 Hyphomonas neptunium ATCC 15444 4290079 YP_761400.1 CDS gcvH NC_008358.1 2883370 2883741 D identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 2883370..2883741 Hyphomonas neptunium ATCC 15444 4289681 YP_761401.1 CDS HNE_2721 NC_008358.1 2883746 2885089 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 2883746..2885089 Hyphomonas neptunium ATCC 15444 4288474 YP_761402.1 CDS HNE_2722 NC_008358.1 2885095 2886660 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 2885095..2886660 Hyphomonas neptunium ATCC 15444 4288883 YP_761403.1 CDS HNE_2723 NC_008358.1 2886681 2888060 R identified by similarity to SP:P26502; match to protein family HMM PF01757; putative exopolysaccharide production protein ExoZ complement(2886681..2888060) Hyphomonas neptunium ATCC 15444 4289467 YP_761404.1 CDS HNE_2724 NC_008358.1 2888173 2888526 D hypothetical protein 2888173..2888526 Hyphomonas neptunium ATCC 15444 4290543 YP_761405.1 CDS HNE_2725 NC_008358.1 2888622 2890025 D identified by match to protein family HMM PF01979; amidohydrolase family protein 2888622..2890025 Hyphomonas neptunium ATCC 15444 4287169 YP_761406.1 CDS HNE_2726 NC_008358.1 2890022 2891296 D identified by match to protein family HMM PF01979; amidohydrolase family protein 2890022..2891296 Hyphomonas neptunium ATCC 15444 4288051 YP_761407.1 CDS HNE_2727 NC_008358.1 2891462 2892208 D hypothetical protein 2891462..2892208 Hyphomonas neptunium ATCC 15444 4290525 YP_761408.1 CDS HNE_2728 NC_008358.1 2892218 2892634 D identified by match to protein family HMM PF07370; hypothetical protein 2892218..2892634 Hyphomonas neptunium ATCC 15444 4287696 YP_761409.1 CDS HNE_2729 NC_008358.1 2892767 2893891 D putative lipoprotein 2892767..2893891 Hyphomonas neptunium ATCC 15444 4288546 YP_761410.1 CDS HNE_2730 NC_008358.1 2893961 2894194 D hypothetical protein 2893961..2894194 Hyphomonas neptunium ATCC 15444 4289437 YP_761411.1 CDS HNE_2731 NC_008358.1 2894198 2894524 R identified by match to protein family HMM PF07883; cupin domain-containing protein complement(2894198..2894524) Hyphomonas neptunium ATCC 15444 4287758 YP_761412.1 CDS HNE_2732 NC_008358.1 2894729 2895523 D identified by similarity to GB:CAG35112.1; match to protein family HMM PF01925; hypothetical protein 2894729..2895523 Hyphomonas neptunium ATCC 15444 4290457 YP_761413.1 CDS HNE_2733 NC_008358.1 2895520 2896974 R identified by similarity to GB:BAA31229.1; match to protein family HMM PF02386; putative potassium uptake protein TrkH complement(2895520..2896974) Hyphomonas neptunium ATCC 15444 4287610 YP_761414.1 CDS HNE_2734 NC_008358.1 2897012 2897203 R hypothetical protein complement(2897012..2897203) Hyphomonas neptunium ATCC 15444 4288239 YP_761415.1 CDS ldh2 NC_008358.1 2897114 2898169 D identified by similarity to SP:P13154; match to protein family HMM PF00208; match to protein family HMM PF02812; leucine dehydrogenase 2897114..2898169 Hyphomonas neptunium ATCC 15444 4289605 YP_761416.1 CDS HNE_2736 NC_008358.1 2898256 2899086 D identified by match to protein family HMM PF00582; universal stress protein family protein 2898256..2899086 Hyphomonas neptunium ATCC 15444 4289788 YP_761417.1 CDS HNE_2737 NC_008358.1 2899111 2899476 D hypothetical protein 2899111..2899476 Hyphomonas neptunium ATCC 15444 4288572 YP_761418.1 CDS HNE_2739 NC_008358.1 2899705 2900592 R identified by match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(2899705..2900592) Hyphomonas neptunium ATCC 15444 4287831 YP_761419.1 CDS HNE_2740 NC_008358.1 2900597 2901040 R identified by match to protein family HMM PF02082; hypothetical protein complement(2900597..2901040) Hyphomonas neptunium ATCC 15444 4287863 YP_761420.1 CDS alaS NC_008358.1 2901154 2903799 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2901154..2903799) Hyphomonas neptunium ATCC 15444 4289982 YP_761421.1 CDS recA NC_008358.1 2903977 2905047 R identified by similarity to SP:Q08327; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recA protein complement(2903977..2905047) Hyphomonas neptunium ATCC 15444 4287041 YP_761422.1 CDS HNE_2743 NC_008358.1 2905185 2905436 D hypothetical protein 2905185..2905436 Hyphomonas neptunium ATCC 15444 4288283 YP_761423.1 CDS HNE_2744 NC_008358.1 2905433 2906254 D hypothetical protein 2905433..2906254 Hyphomonas neptunium ATCC 15444 4290450 YP_761424.1 CDS HNE_2745 NC_008358.1 2906263 2908296 R hypothetical protein complement(2906263..2908296) Hyphomonas neptunium ATCC 15444 4287313 YP_761425.1 CDS HNE_2746 NC_008358.1 2908410 2909387 R identified by similarity to SP:P40783; match to protein family HMM PF00107; putative quinone oxidoreductase complement(2908410..2909387) Hyphomonas neptunium ATCC 15444 4289740 YP_761426.1 CDS HNE_2747 NC_008358.1 2909515 2909883 D identified by match to protein family HMM PF00903; glyoxalase family protein 2909515..2909883 Hyphomonas neptunium ATCC 15444 4288679 YP_761427.1 CDS HNE_2748 NC_008358.1 2909911 2910171 R hypothetical protein complement(2909911..2910171) Hyphomonas neptunium ATCC 15444 4290111 YP_761428.1 CDS HNE_2749 NC_008358.1 2910171 2910959 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(2910171..2910959) Hyphomonas neptunium ATCC 15444 4288314 YP_761429.1 CDS HNE_2750 NC_008358.1 2910960 2911736 R identified by match to protein family HMM PF03741; TerC family membrane protein complement(2910960..2911736) Hyphomonas neptunium ATCC 15444 4289487 YP_761430.1 CDS HNE_2751 NC_008358.1 2911879 2912862 D identified by similarity to GB:CAA55294.1; match to protein family HMM PF00561; putative epoxide hydrolase 2911879..2912862 Hyphomonas neptunium ATCC 15444 4289424 YP_761431.1 CDS HNE_2752 NC_008358.1 2912977 2913699 D hypothetical protein 2912977..2913699 Hyphomonas neptunium ATCC 15444 4288860 YP_761432.1 CDS HNE_2753 NC_008358.1 2913791 2914432 R hypothetical protein complement(2913791..2914432) Hyphomonas neptunium ATCC 15444 4288428 YP_761433.1 CDS HNE_2754 NC_008358.1 2914580 2915353 R identified by match to protein family HMM PF00106; match to protein family HMM PF01370; NAD dependent epimerase/dehydratase family protein complement(2914580..2915353) Hyphomonas neptunium ATCC 15444 4290072 YP_761434.1 CDS rnhB NC_008358.1 2915483 2916106 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 2915483..2916106 Hyphomonas neptunium ATCC 15444 4287353 YP_761435.1 CDS HNE_2756 NC_008358.1 2916153 2916623 D GIY-YIG domain-containing protein 2916153..2916623 Hyphomonas neptunium ATCC 15444 4287738 YP_761436.1 CDS queA NC_008358.1 2916630 2917685 R identified by similarity to SP:O32054; match to protein family HMM PF02547; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2916630..2917685) Hyphomonas neptunium ATCC 15444 4288065 YP_761437.1 CDS HNE_2758 NC_008358.1 2917718 2918701 R identified by match to protein family HMM PF00160; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2917718..2918701) Hyphomonas neptunium ATCC 15444 4289048 YP_761438.1 CDS coaD NC_008358.1 2918698 2919195 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase complement(2918698..2919195) Hyphomonas neptunium ATCC 15444 4289539 YP_761439.1 CDS gyrA NC_008358.1 2919249 2922029 R identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A complement(2919249..2922029) Hyphomonas neptunium ATCC 15444 4289883 YP_761440.1 CDS HNE_2761 NC_008358.1 2922207 2923262 D identified by match to protein family HMM PF01344; match to protein family HMM PF07646; kelch repeat-containing protein 2922207..2923262 Hyphomonas neptunium ATCC 15444 4288943 YP_761441.1 CDS HNE_2762 NC_008358.1 2923295 2923954 D identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase 2923295..2923954 Hyphomonas neptunium ATCC 15444 4289260 YP_761442.1 CDS HNE_2763 NC_008358.1 2923963 2924784 R identified by similarity to SP:P05191; match to protein family HMM PF00905; putative beta-lactamase complement(2923963..2924784) Hyphomonas neptunium ATCC 15444 4289821 YP_761443.1 CDS ssb NC_008358.1 2924846 2925337 R identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(2924846..2925337) Hyphomonas neptunium ATCC 15444 4289695 YP_761444.1 CDS uvrA NC_008358.1 2925564 2928542 D identified by similarity to SP:Q50968; match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 2925564..2928542 Hyphomonas neptunium ATCC 15444 4290434 YP_761445.1 CDS HNE_2766 NC_008358.1 2928560 2929540 R hypothetical protein complement(2928560..2929540) Hyphomonas neptunium ATCC 15444 4288902 YP_761446.1 CDS HNE_2767 NC_008358.1 2929595 2930410 R hypothetical protein complement(2929595..2930410) Hyphomonas neptunium ATCC 15444 4287497 YP_761447.1 CDS gid NC_008358.1 2930509 2931912 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2930509..2931912 Hyphomonas neptunium ATCC 15444 4287632 YP_761448.1 CDS HNE_2769 NC_008358.1 2931918 2932805 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 2931918..2932805 Hyphomonas neptunium ATCC 15444 4287177 YP_761449.1 CDS HNE_2770 NC_008358.1 2932806 2934095 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein complement(2932806..2934095) Hyphomonas neptunium ATCC 15444 4288515 YP_761450.1 CDS HNE_2771 NC_008358.1 2934191 2935504 R identified by similarity to SP:P28303; match to protein family HMM PF01554; match to protein family HMM TIGR00797; putative DNA-damage-inducible protein F complement(2934191..2935504) Hyphomonas neptunium ATCC 15444 4290229 YP_761451.1 CDS HNE_2772 NC_008358.1 2935604 2936905 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein complement(2935604..2936905) Hyphomonas neptunium ATCC 15444 4288775 YP_761452.1 CDS HNE_2773 NC_008358.1 2937036 2937782 D identified by similarity to GB:BAC52694.1; match to protein family HMM PF01925; hypothetical protein 2937036..2937782 Hyphomonas neptunium ATCC 15444 4287014 YP_761453.1 CDS HNE_2774 NC_008358.1 2937953 2938846 D identified by similarity to SP:P10183; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 2937953..2938846 Hyphomonas neptunium ATCC 15444 4290236 YP_761454.1 CDS HNE_2775 NC_008358.1 2938870 2940606 R identified by similarity to GB:AAS14895.1; match to protein family HMM PF00999; match to protein family HMM PF02254; glutathione-regulated potassium-efflux system protein complement(2938870..2940606) Hyphomonas neptunium ATCC 15444 4287925 YP_761455.1 CDS HNE_2776 NC_008358.1 2940664 2941104 R identified by match to protein family HMM PF00383; cytidine/deoxycytidylate deaminase family protein complement(2940664..2941104) Hyphomonas neptunium ATCC 15444 4287604 YP_761456.1 CDS HNE_2777 NC_008358.1 2941194 2941862 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase family protein complement(2941194..2941862) Hyphomonas neptunium ATCC 15444 4289689 YP_761457.1 CDS HNE_2778 NC_008358.1 2942008 2942568 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; putative methyltransferase 2942008..2942568 Hyphomonas neptunium ATCC 15444 4287508 YP_761458.1 CDS HNE_2779 NC_008358.1 2942565 2942978 R hypothetical protein complement(2942565..2942978) Hyphomonas neptunium ATCC 15444 4289242 YP_761459.1 CDS HNE_2780 NC_008358.1 2943054 2944085 R identified by match to protein family HMM PF01734; patatin family phospholipase complement(2943054..2944085) Hyphomonas neptunium ATCC 15444 4287527 YP_761460.1 CDS HNE_2781 NC_008358.1 2944171 2945421 D identified by match to protein family HMM PF05958; putative 23S rRNA (uracil-5-)-methyltransferase RumA 2944171..2945421 Hyphomonas neptunium ATCC 15444 4288837 YP_761461.1 CDS HNE_2782 NC_008358.1 2945418 2945864 D identified by similarity to SP:Q58549; match to protein family HMM PF00293; NUDIX family NudH subfamily hydrolase 2945418..2945864 Hyphomonas neptunium ATCC 15444 4289833 YP_761462.1 CDS HNE_2783 NC_008358.1 2946035 2946820 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2946035..2946820 Hyphomonas neptunium ATCC 15444 4289632 YP_761463.1 CDS HNE_2784 NC_008358.1 2946938 2947267 D hypothetical protein 2946938..2947267 Hyphomonas neptunium ATCC 15444 4290218 YP_761464.1 CDS HNE_2785 NC_008358.1 2947385 2947744 R hypothetical protein complement(2947385..2947744) Hyphomonas neptunium ATCC 15444 4289157 YP_761465.1 CDS HNE_2786 NC_008358.1 2947962 2948939 D identified by similarity to GB:AAF98273.1; match to protein family HMM PF00478; match to protein family HMM PF03060; trans-2-enoyl-ACP reductase II 2947962..2948939 Hyphomonas neptunium ATCC 15444 4287253 YP_761466.1 CDS corA NC_008358.1 2948987 2949991 R identified by match to protein family HMM PF01544; magnesium and cobalt transport protein CorA complement(2948987..2949991) Hyphomonas neptunium ATCC 15444 4288736 YP_761467.1 CDS HNE_2788 NC_008358.1 2950058 2951239 R identified by match to protein family HMM PF07995; glucose/sorbosone family dehydrogenase complement(2950058..2951239) Hyphomonas neptunium ATCC 15444 4289100 YP_761468.1 CDS HNE_2789 NC_008358.1 2951264 2952259 R identified by match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(2951264..2952259) Hyphomonas neptunium ATCC 15444 4288157 YP_761469.1 CDS HNE_2790 NC_008358.1 2952239 2952676 D identified by match to protein family HMM TIGR02301; hypothetical protein 2952239..2952676 Hyphomonas neptunium ATCC 15444 4289337 YP_761470.1 CDS ggt1 NC_008358.1 2952673 2954583 D identified by match to protein family HMM PF01019; gamma-glutamyltransferase 2952673..2954583 Hyphomonas neptunium ATCC 15444 4288617 YP_761471.1 CDS HNE_2792 NC_008358.1 2954573 2955232 D identified by match to protein family HMM PF03167; uracil-DNA glycosylase family protein 2954573..2955232 Hyphomonas neptunium ATCC 15444 4289706 YP_761472.1 CDS HNE_2793 NC_008358.1 2955229 2955867 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(2955229..2955867) Hyphomonas neptunium ATCC 15444 4289114 YP_761473.1 CDS HNE_2794 NC_008358.1 2955949 2956980 D identified by match to protein family HMM PF01636; phosphotransferase enzyme family protein 2955949..2956980 Hyphomonas neptunium ATCC 15444 4290292 YP_761474.1 CDS HNE_2795 NC_008358.1 2957024 2958250 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; putative acyl-CoA dehydrogenase 2957024..2958250 Hyphomonas neptunium ATCC 15444 4287688 YP_761475.1 CDS HNE_2796 NC_008358.1 2958275 2959318 D identified by match to protein family HMM PF00107; class III alcohol dehydrogenase 2958275..2959318 Hyphomonas neptunium ATCC 15444 4288324 YP_761476.1 CDS HNE_2797 NC_008358.1 2959410 2960672 D identified by match to protein family HMM PF00067; cytochrome P450 family protein 2959410..2960672 Hyphomonas neptunium ATCC 15444 4288806 YP_761477.1 CDS HNE_2798 NC_008358.1 2960739 2961332 R identified by match to protein family HMM PF03031; phosphoprotein phosphatase complement(2960739..2961332) Hyphomonas neptunium ATCC 15444 4288297 YP_761478.1 CDS smpB NC_008358.1 2961333 2961818 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2961333..2961818) Hyphomonas neptunium ATCC 15444 4288656 YP_761479.1 CDS dapA NC_008358.1 2961828 2962709 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2961828..2962709) Hyphomonas neptunium ATCC 15444 4289744 YP_761480.1 CDS HNE_2801 NC_008358.1 2962811 2965003 D identified by similarity to SP:P03810; match to protein family HMM PF01464; Slt family transglycosylase 2962811..2965003 Hyphomonas neptunium ATCC 15444 4288821 YP_761481.1 CDS HNE_2802 NC_008358.1 2965327 2965722 D hypothetical protein 2965327..2965722 Hyphomonas neptunium ATCC 15444 4287364 YP_761482.1 CDS calB NC_008358.1 2965861 2967297 R identified by similarity to GB:CAA06926.1; match to protein family HMM PF00171; coniferyl aldehyde dehydrogenase complement(2965861..2967297) Hyphomonas neptunium ATCC 15444 4287509 YP_761483.1 CDS HNE_2804 NC_008358.1 2967465 2968265 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2967465..2968265 Hyphomonas neptunium ATCC 15444 4289465 YP_761484.1 CDS HNE_2805 NC_008358.1 2968364 2968852 D hypothetical protein 2968364..2968852 Hyphomonas neptunium ATCC 15444 4290011 YP_761485.1 CDS HNE_2806 NC_008358.1 2968855 2969232 R identified by match to protein family HMM PF04993; TfoX domain-containing protein complement(2968855..2969232) Hyphomonas neptunium ATCC 15444 4288653 YP_761486.1 CDS HNE_2808 NC_008358.1 2969231 2969524 D hypothetical protein 2969231..2969524 Hyphomonas neptunium ATCC 15444 4290530 YP_761487.1 CDS HNE_2807 NC_008358.1 2969249 2969380 R hypothetical protein complement(2969249..2969380) Hyphomonas neptunium ATCC 15444 4290300 YP_761488.1 CDS HNE_2809 NC_008358.1 2969503 2970699 R identified by match to protein family HMM PF00144; beta-lactamase complement(2969503..2970699) Hyphomonas neptunium ATCC 15444 4289329 YP_761489.1 CDS HNE_2810 NC_008358.1 2970738 2971898 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(2970738..2971898) Hyphomonas neptunium ATCC 15444 4288068 YP_761490.1 CDS HNE_2811 NC_008358.1 2972010 2972441 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 2972010..2972441 Hyphomonas neptunium ATCC 15444 4289952 YP_761491.1 CDS HNE_2812 NC_008358.1 2972438 2973229 D identified by similarity to GB:AAO66470.1; match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2972438..2973229 Hyphomonas neptunium ATCC 15444 4288024 YP_761492.1 CDS HNE_2813 NC_008358.1 2973328 2975991 R identified by match to protein family HMM PF01433; M1 family peptidase complement(2973328..2975991) Hyphomonas neptunium ATCC 15444 4287381 YP_761493.1 CDS HNE_2815 NC_008358.1 2978025 2978639 R identified by match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(2978025..2978639) Hyphomonas neptunium ATCC 15444 4289750 YP_761494.1 CDS HNE_2816 NC_008358.1 2978650 2980584 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; putative TonB-dependent receptor complement(2978650..2980584) Hyphomonas neptunium ATCC 15444 4287003 YP_761495.1 CDS HNE_2817 NC_008358.1 2980743 2982032 R identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; NupC family nucleoside transporter complement(2980743..2982032) Hyphomonas neptunium ATCC 15444 4288862 YP_761496.1 CDS HNE_2818 NC_008358.1 2982243 2983790 D identified by match to protein family HMM PF00450; serine carboxypeptidase family protein 2982243..2983790 Hyphomonas neptunium ATCC 15444 4287272 YP_761497.1 CDS HNE_2819 NC_008358.1 2984329 2984694 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(2984329..2984694) Hyphomonas neptunium ATCC 15444 4287870 YP_761498.1 CDS HNE_2820 NC_008358.1 2984839 2985759 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 2984839..2985759 Hyphomonas neptunium ATCC 15444 4288746 YP_761499.1 CDS HNE_2821 NC_008358.1 2985826 2986200 D identified by match to protein family HMM PF00050; match to protein family HMM PF07648; Kazal domain-containing protein 2985826..2986200 Hyphomonas neptunium ATCC 15444 4288311 YP_761500.1 CDS HNE_2822 NC_008358.1 2986216 2986443 R hypothetical protein complement(2986216..2986443) Hyphomonas neptunium ATCC 15444 4288369 YP_761501.1 CDS HNE_2823 NC_008358.1 2986459 2987055 R identified by similarity to GB:AAV93946.1; hypothetical protein complement(2986459..2987055) Hyphomonas neptunium ATCC 15444 4287788 YP_761502.1 CDS HNE_2824 NC_008358.1 2987157 2988221 R hypothetical protein complement(2987157..2988221) Hyphomonas neptunium ATCC 15444 4289968 YP_761503.1 CDS HNE_2825 NC_008358.1 2988553 2989926 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(2988553..2989926) Hyphomonas neptunium ATCC 15444 4289206 YP_761504.1 CDS rplQ NC_008358.1 2990103 2990525 R identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059; 50S ribosomal protein L17 complement(2990103..2990525) Hyphomonas neptunium ATCC 15444 4287360 YP_761505.1 CDS rpoA NC_008358.1 2990570 2991598 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2990570..2991598) Hyphomonas neptunium ATCC 15444 4287551 YP_761506.1 CDS rpsK NC_008358.1 2991654 2992043 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2991654..2992043) Hyphomonas neptunium ATCC 15444 4289107 YP_761507.1 CDS rpsM NC_008358.1 2992057 2992425 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2992057..2992425) Hyphomonas neptunium ATCC 15444 4288729 YP_761508.1 CDS adk NC_008358.1 2992574 2993143 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(2992574..2993143) Hyphomonas neptunium ATCC 15444 4288649 YP_761509.1 CDS secY NC_008358.1 2993140 2994495 R identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase subunit SecY complement(2993140..2994495) Hyphomonas neptunium ATCC 15444 4287893 YP_761510.1 CDS rplO NC_008358.1 2994585 2995064 R identified by match to protein family HMM PF00256; match to protein family HMM PF01305; match to protein family HMM TIGR01071; 50S ribosomal protein L15 complement(2994585..2995064) Hyphomonas neptunium ATCC 15444 4287611 YP_761511.1 CDS rpmD NC_008358.1 2995117 2995302 R identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308; 50S ribosomal protein L30 complement(2995117..2995302) Hyphomonas neptunium ATCC 15444 4288163 YP_761512.1 CDS rpsE NC_008358.1 2995315 2995917 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2995315..2995917) Hyphomonas neptunium ATCC 15444 4287018 YP_761513.1 CDS rplR NC_008358.1 2995931 2996293 R identified by match to protein family HMM PF00861; match to protein family HMM TIGR00060; 50S ribosomal protein L18 complement(2995931..2996293) Hyphomonas neptunium ATCC 15444 4290389 YP_761514.1 CDS rplF NC_008358.1 2996298 2996909 R identified by match to protein family HMM PF00347; 50S ribosomal protein L6 complement(2996298..2996909) Hyphomonas neptunium ATCC 15444 4287166 YP_761515.1 CDS rpsH NC_008358.1 2996922 2997317 R identified by match to protein family HMM PF00410; 30S ribosomal protein S8 complement(2996922..2997317) Hyphomonas neptunium ATCC 15444 4290290 YP_761516.1 CDS rpsN NC_008358.1 2997334 2997639 R identified by match to protein family HMM PF00253; 30S ribosomal protein S14 complement(2997334..2997639) Hyphomonas neptunium ATCC 15444 4287866 YP_761517.1 CDS rplE NC_008358.1 2997659 2998213 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2997659..2998213) Hyphomonas neptunium ATCC 15444 4286988 YP_761518.1 CDS rplX NC_008358.1 2998206 2998523 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2998206..2998523) Hyphomonas neptunium ATCC 15444 4287004 YP_761519.1 CDS rplN NC_008358.1 2998526 2998894 R identified by match to protein family HMM PF00238; match to protein family HMM TIGR01067; 50S ribosomal protein L14 complement(2998526..2998894) Hyphomonas neptunium ATCC 15444 4288548 YP_761520.1 CDS rpsQ NC_008358.1 2998891 2999136 R identified by match to protein family HMM PF00366; 30S ribosomal protein S17 complement(2998891..2999136) Hyphomonas neptunium ATCC 15444 4288769 YP_761521.1 CDS rpmC NC_008358.1 2999148 2999345 R identified by match to protein family HMM PF00831; match to protein family HMM TIGR00012; 50S ribosomal protein L29 complement(2999148..2999345) Hyphomonas neptunium ATCC 15444 4288549 YP_761522.1 CDS rplP NC_008358.1 2999348 2999764 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2999348..2999764) Hyphomonas neptunium ATCC 15444 4287824 YP_761523.1 CDS rpsC NC_008358.1 2999768 3000505 R identified by match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 complement(2999768..3000505) Hyphomonas neptunium ATCC 15444 4288475 YP_761524.1 CDS rplV NC_008358.1 3000505 3000894 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(3000505..3000894) Hyphomonas neptunium ATCC 15444 4288034 YP_761525.1 CDS rpsS NC_008358.1 3000897 3001175 R identified by match to protein family HMM PF00203; match to protein family HMM TIGR01050; 30S ribosomal protein S19 complement(3000897..3001175) Hyphomonas neptunium ATCC 15444 4287801 YP_761526.1 CDS rplB NC_008358.1 3001194 3002024 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(3001194..3002024) Hyphomonas neptunium ATCC 15444 4288248 YP_761527.1 CDS rplW NC_008358.1 3002043 3002342 R identified by match to protein family HMM PF00276; 50S ribosomal protein L23 complement(3002043..3002342) Hyphomonas neptunium ATCC 15444 4289195 YP_761528.1 CDS rplD NC_008358.1 3002342 3002986 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(3002342..3002986) Hyphomonas neptunium ATCC 15444 4288030 YP_761529.1 CDS rplC NC_008358.1 3002986 3003744 R identified by match to protein family HMM PF00297; 50S ribosomal protein L3 complement(3002986..3003744) Hyphomonas neptunium ATCC 15444 4287958 YP_761530.1 CDS rpsJ NC_008358.1 3003744 3004064 R identified by match to protein family HMM PF00338; match to protein family HMM TIGR01049; 30S ribosomal protein S10 complement(3003744..3004064) Hyphomonas neptunium ATCC 15444 4289888 YP_761531.1 CDS tuf2 NC_008358.1 3004398 3005588 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(3004398..3005588) Hyphomonas neptunium ATCC 15444 4289332 YP_761532.1 CDS fusA NC_008358.1 3005625 3007748 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(3005625..3007748) Hyphomonas neptunium ATCC 15444 4287473 YP_761533.1 CDS rpsG NC_008358.1 3007836 3008306 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(3007836..3008306) Hyphomonas neptunium ATCC 15444 4288834 YP_761534.1 CDS rpsL NC_008358.1 3008322 3008693 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(3008322..3008693) Hyphomonas neptunium ATCC 15444 4290005 YP_761535.1 CDS rpoC NC_008358.1 3009131 3013339 R identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' complement(3009131..3013339) Hyphomonas neptunium ATCC 15444 4289478 YP_761536.1 CDS rpoB NC_008358.1 3013454 3017590 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(3013454..3017590) Hyphomonas neptunium ATCC 15444 4289906 YP_761537.1 CDS rplL NC_008358.1 3017745 3018122 R identified by match to protein family HMM PF00542; match to protein family HMM TIGR00855; 50S ribosomal protein L7/L12 complement(3017745..3018122) Hyphomonas neptunium ATCC 15444 4290422 YP_761538.1 CDS rplJ NC_008358.1 3018181 3018696 R identified by match to protein family HMM PF00466; 50S ribosomal protein L10 complement(3018181..3018696) Hyphomonas neptunium ATCC 15444 4289693 YP_761539.1 CDS HNE_2861 NC_008358.1 3019117 3019953 D hypothetical protein 3019117..3019953 Hyphomonas neptunium ATCC 15444 4287498 YP_761540.1 CDS HNE_2862 NC_008358.1 3019963 3020880 R hypothetical protein complement(3019963..3020880) Hyphomonas neptunium ATCC 15444 4288661 YP_761541.1 CDS HNE_2863 NC_008358.1 3020155 3021051 D hypothetical protein 3020155..3021051 Hyphomonas neptunium ATCC 15444 4287033 YP_761542.1 CDS rplA NC_008358.1 3021063 3021758 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(3021063..3021758) Hyphomonas neptunium ATCC 15444 4287846 YP_761543.1 CDS rplK NC_008358.1 3021764 3022210 R identified by match to protein family HMM PF00298; match to protein family HMM PF03946; match to protein family HMM TIGR01632; 50S ribosomal protein L11 complement(3021764..3022210) Hyphomonas neptunium ATCC 15444 4290516 YP_761544.1 CDS HNE_2866 NC_008358.1 3022411 3023190 R identified by match to protein family HMM PF01435; M48 family peptidase complement(3022411..3023190) Hyphomonas neptunium ATCC 15444 4289989 YP_761545.1 CDS HNE_2867 NC_008358.1 3023529 3023903 D hypothetical protein 3023529..3023903 Hyphomonas neptunium ATCC 15444 4289595 YP_761546.1 CDS HNE_2868 NC_008358.1 3024129 3024716 D hypothetical protein 3024129..3024716 Hyphomonas neptunium ATCC 15444 4290501 YP_761547.1 CDS HNE_2869 NC_008358.1 3024688 3026091 R identified by similarity to GB:BAC46349.1; hypothetical protein complement(3024688..3026091) Hyphomonas neptunium ATCC 15444 4289388 YP_761548.1 CDS HNE_2870 NC_008358.1 3026220 3027035 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; RNA methyltransferase 3026220..3027035 Hyphomonas neptunium ATCC 15444 4288848 YP_761549.1 CDS HNE_2871 NC_008358.1 3027032 3027928 D identified by similarity to GB:CAF24517.1; hypothetical protein 3027032..3027928 Hyphomonas neptunium ATCC 15444 4290482 YP_761550.1 CDS HNE_2872 NC_008358.1 3027965 3028474 R putative lipoprotein complement(3027965..3028474) Hyphomonas neptunium ATCC 15444 4288665 YP_761551.1 CDS HNE_2873 NC_008358.1 3028704 3031820 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(3028704..3031820) Hyphomonas neptunium ATCC 15444 4290504 YP_761552.1 CDS oppA NC_008358.1 3032384 3034009 R identified by similarity to SP:P23843; match to protein family HMM PF00496; oligopeptide ABC transporter periplasmic oligopeptide-binding protein complement(3032384..3034009) Hyphomonas neptunium ATCC 15444 4289671 YP_761553.1 CDS HNE_2875 NC_008358.1 3034121 3034621 D identified by similarity to GB:AAK24786.1; hypothetical protein 3034121..3034621 Hyphomonas neptunium ATCC 15444 4290036 YP_761554.1 CDS HNE_2876 NC_008358.1 3034637 3035536 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(3034637..3035536) Hyphomonas neptunium ATCC 15444 4290303 YP_761555.1 CDS HNE_2877 NC_008358.1 3035570 3036508 R hypothetical protein complement(3035570..3036508) Hyphomonas neptunium ATCC 15444 4290053 YP_761556.1 CDS HNE_2878 NC_008358.1 3036624 3037034 R identified by match to protein family HMM PF04273; match to protein family HMM TIGR01244; hypothetical protein complement(3036624..3037034) Hyphomonas neptunium ATCC 15444 4288118 YP_761557.1 CDS oppB NC_008358.1 3037168 3038139 D identified by similarity to SP:P31132; match to protein family HMM PF00528; oligopeptide ABC transporter permease 3037168..3038139 Hyphomonas neptunium ATCC 15444 4288785 YP_761558.1 CDS oppC NC_008358.1 3038139 3039050 D identified by similarity to SP:P77664; match to protein family HMM PF00528; oligopeptide ABC transporter permease 3038139..3039050 Hyphomonas neptunium ATCC 15444 4289699 YP_761559.1 CDS HNE_2881 NC_008358.1 3039149 3039913 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3039149..3039913 Hyphomonas neptunium ATCC 15444 4287836 YP_761560.1 CDS HNE_2882 NC_008358.1 3039916 3040491 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(3039916..3040491) Hyphomonas neptunium ATCC 15444 4287815 YP_761561.1 CDS HNE_2883 NC_008358.1 3040899 3041687 R identified by match to protein family HMM PF01841; transglutaminase family protein complement(3040899..3041687) Hyphomonas neptunium ATCC 15444 4290235 YP_761562.1 CDS HNE_2884 NC_008358.1 3041912 3042757 D identified by match to protein family HMM PF04228; putative neutral zinc metallopeptidase 3041912..3042757 Hyphomonas neptunium ATCC 15444 4289881 YP_761563.1 CDS HNE_2885 NC_008358.1 3042809 3044098 D identified by match to protein family HMM PF01053; match to protein family HMM TIGR01326; O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein 3042809..3044098 Hyphomonas neptunium ATCC 15444 4290273 YP_761564.1 CDS HNE_2886 NC_008358.1 3044119 3044868 R identified by similarity to GB:AAK25071.1; match to protein family HMM PF01904; hypothetical protein complement(3044119..3044868) Hyphomonas neptunium ATCC 15444 4288302 YP_761565.1 CDS HNE_2887 NC_008358.1 3044948 3045583 R hypothetical protein complement(3044948..3045583) Hyphomonas neptunium ATCC 15444 4288162 YP_761566.1 CDS rpoD NC_008358.1 3045686 3047686 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(3045686..3047686) Hyphomonas neptunium ATCC 15444 4288140 YP_761567.1 CDS dnaG NC_008358.1 3047761 3049644 R synthesizes RNA primers at the replication forks; DNA primase complement(3047761..3049644) Hyphomonas neptunium ATCC 15444 4289959 YP_761568.1 CDS HNE_2890 NC_008358.1 3049783 3050568 R identified by similarity to GB:BAB50529.1; hypothetical protein complement(3049783..3050568) Hyphomonas neptunium ATCC 15444 4290096 YP_761569.1 CDS HNE_2891 NC_008358.1 3050657 3051124 R identified by similarity to GB:CAC46898.1; match to protein family HMM PF02637; hypothetical protein complement(3050657..3051124) Hyphomonas neptunium ATCC 15444 4287216 YP_761570.1 CDS carA NC_008358.1 3051313 3052473 D identified by match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase small subunit 3051313..3052473 Hyphomonas neptunium ATCC 15444 4289709 YP_761571.1 CDS dxnH NC_008358.1 3052527 3053153 R identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144; match to protein family HMM TIGR02428; 3-oxoadipate CoA-succinyl transferase subunit beta complement(3052527..3053153) Hyphomonas neptunium ATCC 15444 4287570 YP_761572.1 CDS dxnG NC_008358.1 3053153 3053860 R identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144; match to protein family HMM TIGR02429; 3-oxoadipate CoA-succinyl transferase subunit alpha complement(3053153..3053860) Hyphomonas neptunium ATCC 15444 4290227 YP_761573.1 CDS HNE_2895 NC_008358.1 3053879 3054391 R hypothetical protein complement(3053879..3054391) Hyphomonas neptunium ATCC 15444 4288045 YP_761574.1 CDS HNE_2896 NC_008358.1 3054544 3055557 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein complement(3054544..3055557) Hyphomonas neptunium ATCC 15444 4287522 YP_761575.1 CDS HNE_2897 NC_008358.1 3055580 3056209 R hypothetical protein complement(3055580..3056209) Hyphomonas neptunium ATCC 15444 4290410 YP_761576.1 CDS HNE_2898 NC_008358.1 3055949 3056179 D hypothetical protein 3055949..3056179 Hyphomonas neptunium ATCC 15444 4289397 YP_761577.1 CDS HNE_2899 NC_008358.1 3056249 3056797 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(3056249..3056797) Hyphomonas neptunium ATCC 15444 4289492 YP_761578.1 CDS hppD NC_008358.1 3056797 3057897 R identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263; 4-hydroxyphenylpyruvate dioxygenase complement(3056797..3057897) Hyphomonas neptunium ATCC 15444 4289498 YP_761579.1 CDS HNE_2901 NC_008358.1 3057970 3058449 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3057970..3058449 Hyphomonas neptunium ATCC 15444 4290515 YP_761580.1 CDS HNE_2902 NC_008358.1 3058665 3059033 D hypothetical protein 3058665..3059033 Hyphomonas neptunium ATCC 15444 4289080 YP_761581.1 CDS HNE_2903 NC_008358.1 3059132 3060070 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(3059132..3060070) Hyphomonas neptunium ATCC 15444 4289057 YP_761582.1 CDS HNE_2904 NC_008358.1 3060109 3060234 R hypothetical protein complement(3060109..3060234) Hyphomonas neptunium ATCC 15444 4288048 YP_761583.1 CDS HNE_2905 NC_008358.1 3060432 3060797 D identified by similarity to SP:Q47839; match to protein family HMM PF03965; BlaI/MecI/CopY family transcriptional regulator 3060432..3060797 Hyphomonas neptunium ATCC 15444 4288245 YP_761584.1 CDS HNE_2906 NC_008358.1 3060794 3062914 D identified by match to protein family HMM PF05569; M56 family peptidase 3060794..3062914 Hyphomonas neptunium ATCC 15444 4287868 YP_761585.1 CDS HNE_2907 NC_008358.1 3062984 3063430 D putative lipoprotein 3062984..3063430 Hyphomonas neptunium ATCC 15444 4289985 YP_761586.1 CDS HNE_2908 NC_008358.1 3063449 3064261 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 3063449..3064261 Hyphomonas neptunium ATCC 15444 4289023 YP_761587.1 CDS HNE_2909 NC_008358.1 3064266 3064865 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 3064266..3064865 Hyphomonas neptunium ATCC 15444 4289831 YP_761588.1 CDS pleC NC_008358.1 3064870 3067335 R identified by similarity to SP:P37894; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229; non-motile and phage-resistance protein complement(3064870..3067335) Hyphomonas neptunium ATCC 15444 4288212 YP_761589.1 CDS pepN NC_008358.1 3067367 3069988 R identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N complement(3067367..3069988) Hyphomonas neptunium ATCC 15444 4290093 YP_761590.1 CDS HNE_2912 NC_008358.1 3070095 3070460 D hypothetical protein 3070095..3070460 Hyphomonas neptunium ATCC 15444 4288506 YP_761591.1 CDS HNE_2913 NC_008358.1 3070461 3072431 R hypothetical protein complement(3070461..3072431) Hyphomonas neptunium ATCC 15444 4287190 YP_761592.1 CDS HNE_2914 NC_008358.1 3072493 3073161 R identified by similarity to GB:AAK24451.1; hypothetical protein complement(3072493..3073161) Hyphomonas neptunium ATCC 15444 4290350 YP_761593.1 CDS HNE_2915 NC_008358.1 3073276 3074391 D identified by match to protein family HMM PF00441; match to protein family HMM PF02771; acyl-CoA dehydrogenase family protein 3073276..3074391 Hyphomonas neptunium ATCC 15444 4288751 YP_761594.1 CDS HNE_2916 NC_008358.1 3074453 3074995 R hypothetical protein complement(3074453..3074995) Hyphomonas neptunium ATCC 15444 4288697 YP_761595.1 CDS HNE_2917 NC_008358.1 3075203 3076402 D identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; acyl-CoA dehydrogenase 3075203..3076402 Hyphomonas neptunium ATCC 15444 4290429 YP_761596.1 CDS HNE_2918 NC_008358.1 3076442 3077062 R identified by similarity to PIR:C97558; putative lipoprotein complement(3076442..3077062) Hyphomonas neptunium ATCC 15444 4288160 YP_761597.1 CDS HNE_2919 NC_008358.1 3077062 3078015 R identified by match to protein family HMM PF02470; virulence factor Mce-like protein complement(3077062..3078015) Hyphomonas neptunium ATCC 15444 4289593 YP_761598.1 CDS HNE_2920 NC_008358.1 3078030 3078797 R identified by similarity to GB:AAS95092.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3078030..3078797) Hyphomonas neptunium ATCC 15444 4290188 YP_761599.1 CDS HNE_2921 NC_008358.1 3078794 3079921 R identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056; hypothetical protein complement(3078794..3079921) Hyphomonas neptunium ATCC 15444 4290435 YP_761600.1 CDS HNE_2922 NC_008358.1 3080011 3081009 D identified by match to protein family HMM PF01188; match to protein family HMM PF02746; mandelate racemase/muconate lactonizing enzyme family protein 3080011..3081009 Hyphomonas neptunium ATCC 15444 4289615 YP_761601.1 CDS HNE_2923 NC_008358.1 3081161 3081691 R hypothetical protein complement(3081161..3081691) Hyphomonas neptunium ATCC 15444 4290142 YP_761602.1 CDS HNE_2924 NC_008358.1 3081786 3083699 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3081786..3083699) Hyphomonas neptunium ATCC 15444 4289167 YP_761603.1 CDS HNE_2925 NC_008358.1 3083821 3084438 D identified by match to protein family HMM PF00583; acetyltransferase 3083821..3084438 Hyphomonas neptunium ATCC 15444 4287026 YP_761604.1 CDS HNE_2926 NC_008358.1 3084435 3085547 R identified by similarity to GB:AAK23214.1; hypothetical protein complement(3084435..3085547) Hyphomonas neptunium ATCC 15444 4290199 YP_761605.1 CDS HNE_2927 NC_008358.1 3085651 3086067 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3085651..3086067 Hyphomonas neptunium ATCC 15444 4289282 YP_761606.1 CDS HNE_2928 NC_008358.1 3086093 3086476 D identified by match to protein family HMM PF04241; hypothetical protein 3086093..3086476 Hyphomonas neptunium ATCC 15444 4290153 YP_761607.1 CDS HNE_2929 NC_008358.1 3086458 3087072 R identified by similarity to SP:O57524; putative lipoprotein complement(3086458..3087072) Hyphomonas neptunium ATCC 15444 4289877 YP_761608.1 CDS pip NC_008358.1 3087157 3088173 D identified by similarity to SP:P52279; match to protein family HMM PF00561; match to protein family HMM TIGR01249; prolyl aminopeptidase 3087157..3088173 Hyphomonas neptunium ATCC 15444 4288615 YP_761609.1 CDS HNE_2931 NC_008358.1 3088264 3088614 D identified by similarity to GB:BAB98439.1; hypothetical protein 3088264..3088614 Hyphomonas neptunium ATCC 15444 4288851 YP_761610.1 CDS HNE_2932 NC_008358.1 3089214 3090635 R identified by match to protein family HMM PF00209; sodium-dependent symporter family protein complement(3089214..3090635) Hyphomonas neptunium ATCC 15444 4289143 YP_761611.1 CDS rodA NC_008358.1 3090718 3091845 R identified by match to protein family HMM PF01098; rod shape-determining protein RodA complement(3090718..3091845) Hyphomonas neptunium ATCC 15444 4287976 YP_761612.1 CDS mrdA NC_008358.1 3091950 3093905 R identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; penicillin-binding protein 2 complement(3091950..3093905) Hyphomonas neptunium ATCC 15444 4288093 YP_761613.1 CDS HNE_2935 NC_008358.1 3093902 3094453 R hypothetical protein complement(3093902..3094453) Hyphomonas neptunium ATCC 15444 4290400 YP_761614.1 CDS HNE_2936 NC_008358.1 3094456 3095490 R identified by similarity to SP:P16926; match to protein family HMM PF04085; putative rod shape-determining protein MreC complement(3094456..3095490) Hyphomonas neptunium ATCC 15444 4288845 YP_761615.1 CDS mreB NC_008358.1 3095529 3096569 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(3095529..3096569) Hyphomonas neptunium ATCC 15444 4290025 YP_761616.1 CDS HNE_2938 NC_008358.1 3097054 3099399 R identified by similarity to SP:P03018; match to protein family HMM PF00580; putative DNA helicase II complement(3097054..3099399) Hyphomonas neptunium ATCC 15444 4287552 YP_761617.1 CDS HNE_2939 NC_008358.1 3099565 3101265 D identified by match to protein family HMM PF05170; AsmA family protein 3099565..3101265 Hyphomonas neptunium ATCC 15444 4290414 YP_761618.1 CDS HNE_2940 NC_008358.1 3101340 3102068 D hypothetical protein 3101340..3102068 Hyphomonas neptunium ATCC 15444 4287597 YP_761619.1 CDS HNE_2941 NC_008358.1 3102077 3102622 R identified by similarity to GB:BAC94104.1; putative lipoprotein complement(3102077..3102622) Hyphomonas neptunium ATCC 15444 4288348 YP_761620.1 CDS HNE_2942 NC_008358.1 3102708 3103814 R identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase complement(3102708..3103814) Hyphomonas neptunium ATCC 15444 4290291 YP_761621.1 CDS HNE_2943 NC_008358.1 3103965 3104942 D hypothetical protein 3103965..3104942 Hyphomonas neptunium ATCC 15444 4289852 YP_761622.1 CDS HNE_2944 NC_008358.1 3104971 3105096 R hypothetical protein complement(3104971..3105096) Hyphomonas neptunium ATCC 15444 4288808 YP_761623.1 CDS HNE_2945 NC_008358.1 3105163 3105354 R identified by similarity to GB:AAV95182.1; hypothetical protein complement(3105163..3105354) Hyphomonas neptunium ATCC 15444 4290052 YP_761624.1 CDS HNE_2946 NC_008358.1 3105351 3105956 R hypothetical protein complement(3105351..3105956) Hyphomonas neptunium ATCC 15444 4289534 YP_761625.1 CDS HNE_2947 NC_008358.1 3105962 3106300 R hypothetical protein complement(3105962..3106300) Hyphomonas neptunium ATCC 15444 4288405 YP_761626.1 CDS HNE_2948 NC_008358.1 3106344 3106625 R identified by similarity to GB:AAW77844.1; hypothetical protein complement(3106344..3106625) Hyphomonas neptunium ATCC 15444 4290217 YP_761627.1 CDS HNE_2949 NC_008358.1 3106693 3107016 R hypothetical protein complement(3106693..3107016) Hyphomonas neptunium ATCC 15444 4289219 YP_761628.1 CDS fumC NC_008358.1 3107044 3108444 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(3107044..3108444) Hyphomonas neptunium ATCC 15444 4287447 YP_761629.1 CDS HNE_2951 NC_008358.1 3109107 3109580 R hypothetical protein complement(3109107..3109580) Hyphomonas neptunium ATCC 15444 4287214 YP_761630.1 CDS HNE_2952 NC_008358.1 3109793 3110149 D identified by match to protein family HMM PF05866; RusA family protein 3109793..3110149 Hyphomonas neptunium ATCC 15444 4287107 YP_761631.1 CDS HNE_2953 NC_008358.1 3110156 3111382 R identified by match to protein family HMM PF00067; cytochrome P450 family protein complement(3110156..3111382) Hyphomonas neptunium ATCC 15444 4287325 YP_761632.1 CDS HNE_2954 NC_008358.1 3111473 3111925 R identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein complement(3111473..3111925) Hyphomonas neptunium ATCC 15444 4289274 YP_761633.1 CDS HNE_2955 NC_008358.1 3111955 3112425 R identified by similarity to GB:AAK24073.1; match to protein family HMM PF07031; hypothetical protein complement(3111955..3112425) Hyphomonas neptunium ATCC 15444 4288056 YP_761634.1 CDS HNE_2956 NC_008358.1 3112624 3113862 D identified by match to protein family HMM PF00282; pyridoxal-dependent decarboxylase domain-containing protein 3112624..3113862 Hyphomonas neptunium ATCC 15444 4289150 YP_761635.1 CDS HNE_2957 NC_008358.1 3113956 3114372 D hypothetical protein 3113956..3114372 Hyphomonas neptunium ATCC 15444 4289826 YP_761636.1 CDS HNE_2958 NC_008358.1 3114397 3115737 R identified by match to protein family HMM PF01663; type I phosphodiesterase/nucleotide pyrophosphatase family protein complement(3114397..3115737) Hyphomonas neptunium ATCC 15444 4289925 YP_761637.1 CDS HNE_2959 NC_008358.1 3115887 3117857 D identified by match to protein family HMM PF00326; S9A/B/C family peptidase 3115887..3117857 Hyphomonas neptunium ATCC 15444 4289569 YP_761638.1 CDS HNE_2960 NC_008358.1 3117985 3118656 D identified by match to protein family HMM PF02798; glutathione S-transferase 3117985..3118656 Hyphomonas neptunium ATCC 15444 4289578 YP_761639.1 CDS HNE_2961 NC_008358.1 3118681 3119688 R identified by match to protein family HMM PF00106; match to protein family HMM TIGR01409; short chain dehydrogenase/reductase family oxidoreductase complement(3118681..3119688) Hyphomonas neptunium ATCC 15444 4290082 YP_761640.1 CDS HNE_2962 NC_008358.1 3119799 3120281 R hypothetical protein complement(3119799..3120281) Hyphomonas neptunium ATCC 15444 4288652 YP_761641.1 CDS HNE_2963 NC_008358.1 3120271 3120915 R hypothetical protein complement(3120271..3120915) Hyphomonas neptunium ATCC 15444 4289753 YP_761642.1 CDS HNE_2965 NC_008358.1 3121490 3122101 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 3121490..3122101 Hyphomonas neptunium ATCC 15444 4288646 YP_761643.1 CDS uvrC NC_008358.1 3122104 3123948 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(3122104..3123948) Hyphomonas neptunium ATCC 15444 4287988 YP_761644.1 CDS HNE_2967 NC_008358.1 3124031 3124540 R hypothetical protein complement(3124031..3124540) Hyphomonas neptunium ATCC 15444 4287171 YP_761645.1 CDS aatA NC_008358.1 3124579 3125790 D identified by similarity to SP:Q02635; match to protein family HMM PF00155; aspartate aminotransferase 3124579..3125790 Hyphomonas neptunium ATCC 15444 4287910 YP_761646.1 CDS dps NC_008358.1 3125912 3126376 D identified by match to protein family HMM PF00210; DNA protection protein 3125912..3126376 Hyphomonas neptunium ATCC 15444 4287132 YP_761647.1 CDS HNE_2970 NC_008358.1 3126373 3127338 R identified by match to protein family HMM PF07859; alpha/beta fold family hydrolase complement(3126373..3127338) Hyphomonas neptunium ATCC 15444 4287474 YP_761648.1 CDS HNE_2971 NC_008358.1 3127526 3128353 D hypothetical protein 3127526..3128353 Hyphomonas neptunium ATCC 15444 4287605 YP_761649.1 CDS HNE_2972 NC_008358.1 3128407 3130335 D hypothetical protein 3128407..3130335 Hyphomonas neptunium ATCC 15444 4287683 YP_761650.1 CDS HNE_2973 NC_008358.1 3130606 3131517 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(3130606..3131517) Hyphomonas neptunium ATCC 15444 4287460 YP_761651.1 CDS HNE_2974 NC_008358.1 3131673 3132455 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family protein 3131673..3132455 Hyphomonas neptunium ATCC 15444 4288202 YP_761652.1 CDS HNE_2975 NC_008358.1 3133304 3134278 R identified by match to protein family HMM PF00107; zinc-binding dehydrogenase family oxidoreductase complement(3133304..3134278) Hyphomonas neptunium ATCC 15444 4290278 YP_761653.1 CDS HNE_2976 NC_008358.1 3134275 3135315 R identified by match to protein family HMM PF07859; alpha/beta hydrolase fold family protein complement(3134275..3135315) Hyphomonas neptunium ATCC 15444 4288152 YP_761654.1 CDS HNE_2977 NC_008358.1 3135402 3136088 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3135402..3136088) Hyphomonas neptunium ATCC 15444 4288321 YP_761655.1 CDS HNE_2978 NC_008358.1 3136215 3136847 R identified by match to protein family HMM PF03458; hypothetical protein complement(3136215..3136847) Hyphomonas neptunium ATCC 15444 4287584 YP_761656.1 CDS HNE_2979 NC_008358.1 3136988 3139171 D identified by match to protein family HMM PF07693; KAP P-loop domain-containing protein 3136988..3139171 Hyphomonas neptunium ATCC 15444 4290424 YP_761657.1 CDS HNE_2980 NC_008358.1 3139245 3139922 R hypothetical protein complement(3139245..3139922) Hyphomonas neptunium ATCC 15444 4287000 YP_761658.1 CDS HNE_2981 NC_008358.1 3139934 3140641 R hypothetical protein complement(3139934..3140641) Hyphomonas neptunium ATCC 15444 4289941 YP_761659.1 CDS HNE_2982 NC_008358.1 3140684 3141394 R identified by match to protein family HMM PF01551; M23 family peptidase complement(3140684..3141394) Hyphomonas neptunium ATCC 15444 4287574 YP_761660.1 CDS HNE_2983 NC_008358.1 3141405 3142736 R identified by similarity to SP:P49326; match to protein family HMM PF00743; monooxygenase flavin-binding family protein complement(3141405..3142736) Hyphomonas neptunium ATCC 15444 4289514 YP_761661.1 CDS HNE_2984 NC_008358.1 3142703 3143341 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3142703..3143341 Hyphomonas neptunium ATCC 15444 4287071 YP_761662.1 CDS HNE_2985 NC_008358.1 3143338 3143766 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3143338..3143766 Hyphomonas neptunium ATCC 15444 4289134 YP_761663.1 CDS HNE_2986 NC_008358.1 3143878 3144342 D identified by similarity to GB:AAK24429.1; putative lipoprotein 3143878..3144342 Hyphomonas neptunium ATCC 15444 4287945 YP_761664.1 CDS HNE_2987 NC_008358.1 3144352 3145239 R identified by similarity to GB:AAM40707.1; putative lipoprotein complement(3144352..3145239) Hyphomonas neptunium ATCC 15444 4287996 YP_761665.1 CDS HNE_2988 NC_008358.1 3145252 3148386 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(3145252..3148386) Hyphomonas neptunium ATCC 15444 4287802 YP_761666.1 CDS HNE_2989 NC_008358.1 3148576 3149682 D identified by match to protein family HMM PF00534; glycosyl transferase family protein 3148576..3149682 Hyphomonas neptunium ATCC 15444 4286995 YP_761667.1 CDS HNE_2990 NC_008358.1 3149685 3150782 R identified by similarity to SP:P39665; putative phosphate ABC transporter periplasmic phosphate-binding protein complement(3149685..3150782) Hyphomonas neptunium ATCC 15444 4289576 YP_761668.1 CDS HNE_2991 NC_008358.1 3151052 3152248 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; decarboxylase 3151052..3152248 Hyphomonas neptunium ATCC 15444 4289284 YP_761669.1 CDS murI NC_008358.1 3152191 3153063 R identified by similarity to SP:P22634; match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase complement(3152191..3153063) Hyphomonas neptunium ATCC 15444 4289175 YP_761670.1 CDS HNE_2993 NC_008358.1 3153174 3153497 D hypothetical protein 3153174..3153497 Hyphomonas neptunium ATCC 15444 4289839 YP_761671.1 CDS HNE_2994 NC_008358.1 3153502 3153933 R identified by similarity to GB:CAE36316.1; hypothetical protein complement(3153502..3153933) Hyphomonas neptunium ATCC 15444 4289720 YP_761672.1 CDS HNE_2995 NC_008358.1 3154082 3156466 D identified by similarity to SP:Q59637; pyruvate dehydrogenase E1 component-like protein 3154082..3156466 Hyphomonas neptunium ATCC 15444 4287445 YP_761673.1 CDS HNE_2996 NC_008358.1 3156519 3158411 D identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase 3156519..3158411 Hyphomonas neptunium ATCC 15444 4289491 YP_761674.1 CDS HNE_2997 NC_008358.1 3158427 3159269 R identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase complement(3158427..3159269) Hyphomonas neptunium ATCC 15444 4287315 YP_761675.1 CDS HNE_2998 NC_008358.1 3159286 3160269 R identified by match to protein family HMM PF04371; peptidyl-arginine deiminase family protein complement(3159286..3160269) Hyphomonas neptunium ATCC 15444 4287781 YP_761676.1 CDS HNE_2999 NC_008358.1 3160362 3163508 R identified by similarity to SP:P38370; outer membrane receptor (OMR) family protein complement(3160362..3163508) Hyphomonas neptunium ATCC 15444 4288069 YP_761677.1 CDS HNE_3000 NC_008358.1 3163770 3165347 D identified by similarity to GB:AAK22196.1; hypothetical protein 3163770..3165347 Hyphomonas neptunium ATCC 15444 4287668 YP_761678.1 CDS msrA1 NC_008358.1 3165359 3166006 R identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase complement(3165359..3166006) Hyphomonas neptunium ATCC 15444 4289643 YP_761679.1 CDS pbpC NC_008358.1 3166169 3168223 R identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073; penicillin-binding protein 1C complement(3166169..3168223) Hyphomonas neptunium ATCC 15444 4288276 YP_761680.1 CDS HNE_3003 NC_008358.1 3168265 3173262 R identified by match to protein family HMM PF01835; match to protein family HMM PF07703; alpha-2-macroglobulin family protein complement(3168265..3173262) Hyphomonas neptunium ATCC 15444 4289435 YP_761681.1 CDS HNE_3004 NC_008358.1 3173349 3174212 R identified by similarity to GB:AAK23039.1; match to protein family HMM PF01370; hypothetical protein complement(3173349..3174212) Hyphomonas neptunium ATCC 15444 4290056 YP_761682.1 CDS HNE_3005 NC_008358.1 3174276 3174950 D identified by match to protein family HMM PF00515; hypothetical protein 3174276..3174950 Hyphomonas neptunium ATCC 15444 4289673 YP_761683.1 CDS HNE_3006 NC_008358.1 3174969 3175394 R putative lipoprotein complement(3174969..3175394) Hyphomonas neptunium ATCC 15444 4289921 YP_761684.1 CDS HNE_3007 NC_008358.1 3175555 3176925 R identified by match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase complement(3175555..3176925) Hyphomonas neptunium ATCC 15444 4289996 YP_761685.1 CDS HNE_3008 NC_008358.1 3177046 3177912 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 3177046..3177912 Hyphomonas neptunium ATCC 15444 4288364 YP_761686.1 CDS HNE_3009 NC_008358.1 3177982 3179001 R identified by match to protein family HMM PF00482; type II secretion system protein complement(3177982..3179001) Hyphomonas neptunium ATCC 15444 4287598 YP_761687.1 CDS HNE_3010 NC_008358.1 3179016 3180035 R identified by similarity to GB:AAF40196.1; match to protein family HMM PF00482; secretion system protein complement(3179016..3180035) Hyphomonas neptunium ATCC 15444 4289524 YP_761688.1 CDS cpaF NC_008358.1 3180047 3181534 R identified by similarity to GB:AAF40195.1; match to protein family HMM PF00437; pilus assembly protein CpaF complement(3180047..3181534) Hyphomonas neptunium ATCC 15444 4288750 YP_761689.1 CDS HNE_3012 NC_008358.1 3181560 3182966 R identified by similarity to GB:AAF40194.1; pilus assembly protein CpaE complement(3181560..3182966) Hyphomonas neptunium ATCC 15444 4289038 YP_761690.1 CDS HNE_3013 NC_008358.1 3183001 3183711 R identified by similarity to GB:AAF40193.1; match to protein family HMM TIGR02522; pilus assembly protein CpaD complement(3183001..3183711) Hyphomonas neptunium ATCC 15444 4290381 YP_761691.1 CDS HNE_3014 NC_008358.1 3183724 3185331 R identified by similarity to GB:AAF40192.1; match to protein family HMM PF00263; match to protein family HMM PF04972; pilus assembly protein CpaC complement(3183724..3185331) Hyphomonas neptunium ATCC 15444 4288847 YP_761692.1 CDS HNE_3015 NC_008358.1 3185334 3186179 R identified by similarity to GB:AAF40191.1; match to protein family HMM PF06981; pilus assembly protein CpaB complement(3185334..3186179) Hyphomonas neptunium ATCC 15444 4287726 YP_761693.1 CDS HNE_3016 NC_008358.1 3186278 3186793 R identified by similarity to GB:AAF40190.1; match to protein family HMM PF01478; pilus assembly protein CpaA complement(3186278..3186793) Hyphomonas neptunium ATCC 15444 4288826 YP_761694.1 CDS HNE_3017 NC_008358.1 3186944 3187117 R identified by match to protein family HMM PF04964; flp/Fap pilus protein complement(3186944..3187117) Hyphomonas neptunium ATCC 15444 4288218 YP_761695.1 CDS HNE_3018 NC_008358.1 3187425 3187868 D identified by similarity to GB:BAC46709.1; hypothetical protein 3187425..3187868 Hyphomonas neptunium ATCC 15444 4287984 YP_761696.1 CDS HNE_3019 NC_008358.1 3187981 3188547 D identified by match to protein family HMM PF07811; TadE-like protein 3187981..3188547 Hyphomonas neptunium ATCC 15444 4287913 YP_761697.1 CDS HNE_3020 NC_008358.1 3188544 3189161 D Flp/Fap pilin component 3188544..3189161 Hyphomonas neptunium ATCC 15444 4289647 YP_761698.1 CDS HNE_3021 NC_008358.1 3189158 3190645 R identified by similarity to GB:AAK24916.1; hypothetical protein complement(3189158..3190645) Hyphomonas neptunium ATCC 15444 4290114 YP_761699.1 CDS murC NC_008358.1 3190739 3192163 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(3190739..3192163) Hyphomonas neptunium ATCC 15444 4288567 YP_761700.1 CDS HNE_3023 NC_008358.1 3192179 3192535 R hypothetical protein complement(3192179..3192535) Hyphomonas neptunium ATCC 15444 4289844 YP_761701.1 CDS murG NC_008358.1 3192532 3193632 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(3192532..3193632) Hyphomonas neptunium ATCC 15444 4288116 YP_761702.1 CDS HNE_3025 NC_008358.1 3193625 3194776 R identified by match to protein family HMM PF01098; cell cycle protein FtsW complement(3193625..3194776) Hyphomonas neptunium ATCC 15444 4288699 YP_761703.1 CDS murD NC_008358.1 3194773 3196188 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(3194773..3196188) Hyphomonas neptunium ATCC 15444 4287657 YP_761704.1 CDS mraY NC_008358.1 3196199 3197392 R identified by similarity to SP:P15876; match to protein family HMM PF00953; match to protein family HMM TIGR00445; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3196199..3197392) Hyphomonas neptunium ATCC 15444 4288650 YP_761705.1 CDS murF NC_008358.1 3197392 3198828 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(3197392..3198828) Hyphomonas neptunium ATCC 15444 4289111 YP_761706.1 CDS murE NC_008358.1 3198825 3200261 R identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diamino-pimelate ligase complement(3198825..3200261) Hyphomonas neptunium ATCC 15444 4288249 YP_761707.1 CDS HNE_3030 NC_008358.1 3200258 3201901 R identified by similarity to SP:P08149; match to protein family HMM PF00905; match to protein family HMM PF03717; putative penicillin-binding protein 2 complement(3200258..3201901) Hyphomonas neptunium ATCC 15444 4288621 YP_761708.1 CDS HNE_3031 NC_008358.1 3201898 3202290 R putative cell division protein FtsL complement(3201898..3202290) Hyphomonas neptunium ATCC 15444 4287140 YP_761709.1 CDS mraW NC_008358.1 3202287 3203315 R identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(3202287..3203315) Hyphomonas neptunium ATCC 15444 4289135 YP_761710.1 CDS HNE_3033 NC_008358.1 3203315 3203812 R putative MraZ protein complement(3203315..3203812) Hyphomonas neptunium ATCC 15444 4288189 YP_761711.1 CDS HNE_3034 NC_008358.1 3204224 3204766 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00777; match to protein family HMM TIGR00778; alkylhydroperoxidase complement(3204224..3204766) Hyphomonas neptunium ATCC 15444 4290286 YP_761712.1 CDS ahpC NC_008358.1 3204895 3205452 R identified by similarity to GB:AAC61301.1; match to protein family HMM PF00578; alkylhydroperoxide reductase C complement(3204895..3205452) Hyphomonas neptunium ATCC 15444 4289210 YP_761713.1 CDS HNE_3036 NC_008358.1 3205566 3206495 D identified by similarity to SP:P11721; match to protein family HMM PF00126; match to protein family HMM PF03466; putative oxidative stress regulatory protein OxyR 3205566..3206495 Hyphomonas neptunium ATCC 15444 4289395 YP_761714.1 CDS HNE_3037 NC_008358.1 3206624 3207817 D identified by similarity to GB:AAK23460.1; hypothetical protein 3206624..3207817 Hyphomonas neptunium ATCC 15444 4289969 YP_761715.1 CDS HNE_3038 NC_008358.1 3207909 3208892 D identified by match to protein family HMM PF00583; match to protein family HMM PF01047; MarR family transcriptional regulator 3207909..3208892 Hyphomonas neptunium ATCC 15444 4287748 YP_761716.1 CDS HNE_3039 NC_008358.1 3208917 3210392 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; sigma-54 dependent DNA-binding response regulator complement(3208917..3210392) Hyphomonas neptunium ATCC 15444 4287634 YP_761717.1 CDS HNE_3040 NC_008358.1 3210675 3212183 D identified by match to protein family HMM PF01384; phosphate transporter family protein 3210675..3212183 Hyphomonas neptunium ATCC 15444 4289122 YP_761718.1 CDS HNE_3041 NC_008358.1 3212391 3212768 D hypothetical protein 3212391..3212768 Hyphomonas neptunium ATCC 15444 4287415 YP_761719.1 CDS HNE_3042 NC_008358.1 3213821 3213985 R hypothetical protein complement(3213821..3213985) Hyphomonas neptunium ATCC 15444 4289352 YP_761720.1 CDS HNE_3043 NC_008358.1 3214073 3214309 R hypothetical protein complement(3214073..3214309) Hyphomonas neptunium ATCC 15444 4288887 YP_761721.1 CDS HNE_3044 NC_008358.1 3214753 3215103 R identified by similarity to GB:BAD64522.1; hypothetical protein complement(3214753..3215103) Hyphomonas neptunium ATCC 15444 4288126 YP_761722.1 CDS uvrB NC_008358.1 3215337 3217382 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3215337..3217382 Hyphomonas neptunium ATCC 15444 4289378 YP_761723.1 CDS HNE_3047 NC_008358.1 3217688 3218443 R hypothetical protein complement(3217688..3218443) Hyphomonas neptunium ATCC 15444 4288662 YP_761724.1 CDS HNE_3048 NC_008358.1 3218636 3218938 D hypothetical protein 3218636..3218938 Hyphomonas neptunium ATCC 15444 4290394 YP_761725.1 CDS HNE_3049 NC_008358.1 3219040 3219960 D hypothetical protein 3219040..3219960 Hyphomonas neptunium ATCC 15444 4287431 YP_761726.1 CDS HNE_3050 NC_008358.1 3220484 3222820 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 3220484..3222820 Hyphomonas neptunium ATCC 15444 4287027 YP_761727.1 CDS HNE_3051 NC_008358.1 3222945 3223652 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(3222945..3223652) Hyphomonas neptunium ATCC 15444 4287226 YP_761728.1 CDS HNE_3052 NC_008358.1 3223829 3224704 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3223829..3224704 Hyphomonas neptunium ATCC 15444 4290514 YP_761729.1 CDS HNE_3053 NC_008358.1 3224701 3225987 D identified by match to protein family HMM PF07690; major facilitator family transporter 3224701..3225987 Hyphomonas neptunium ATCC 15444 4287956 YP_761730.1 CDS HNE_3054 NC_008358.1 3225965 3226513 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369; thioesterase family protein 3225965..3226513 Hyphomonas neptunium ATCC 15444 4288079 YP_761731.1 CDS HNE_3055 NC_008358.1 3226540 3227166 R putative lipoprotein complement(3226540..3227166) Hyphomonas neptunium ATCC 15444 4289867 YP_761732.1 CDS HNE_3056 NC_008358.1 3227298 3228245 R identified by similarity to SP:P36880; match to protein family HMM PF01061; ABC transporter permease complement(3227298..3228245) Hyphomonas neptunium ATCC 15444 4287396 YP_761733.1 CDS gcrA NC_008358.1 3228374 3228925 D identified by match to protein family HMM PF07750; GcrA cell cycle regulator 3228374..3228925 Hyphomonas neptunium ATCC 15444 4289170 YP_761734.1 CDS HNE_3058 NC_008358.1 3229002 3230381 R identified by similarity to SP:P23545; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase complement(3229002..3230381) Hyphomonas neptunium ATCC 15444 4289436 YP_761735.1 CDS HNE_3059 NC_008358.1 3230592 3232061 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system outer membrane lipoprotein 3230592..3232061 Hyphomonas neptunium ATCC 15444 4289239 YP_761736.1 CDS HNE_3060 NC_008358.1 3232067 3233335 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 3232067..3233335 Hyphomonas neptunium ATCC 15444 4287042 YP_761737.1 CDS HNE_3061 NC_008358.1 3233332 3236553 D identified by match to protein family HMM PF00873; AcrB/AcrD/AcrF family protein 3233332..3236553 Hyphomonas neptunium ATCC 15444 4287900 YP_761738.1 CDS HNE_3062 NC_008358.1 3236639 3238861 D identified by similarity to GB:BAA24495.1; match to protein family HMM PF01431; match to protein family HMM PF05649; M13 family peptidase 3236639..3238861 Hyphomonas neptunium ATCC 15444 4288388 YP_761739.1 CDS HNE_3063 NC_008358.1 3238996 3239325 D hypothetical protein 3238996..3239325 Hyphomonas neptunium ATCC 15444 4288798 YP_761740.1 CDS HNE_3064 NC_008358.1 3239431 3240036 D identified by similarity to SP:P40581; match to protein family HMM PF00255; glutathione peroxidase 3239431..3240036 Hyphomonas neptunium ATCC 15444 4288308 YP_761741.1 CDS HNE_3065 NC_008358.1 3240139 3241320 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acetyltransferase/thiolase family protein 3240139..3241320 Hyphomonas neptunium ATCC 15444 4288378 YP_761742.1 CDS HNE_3066 NC_008358.1 3241329 3241952 D identified by similarity to GB:BAC50874.1; hypothetical protein 3241329..3241952 Hyphomonas neptunium ATCC 15444 4288429 YP_761743.1 CDS HNE_3067 NC_008358.1 3241971 3243053 D identified by similarity to PIR:D98229; hypothetical protein 3241971..3243053 Hyphomonas neptunium ATCC 15444 4288569 YP_761744.1 CDS HNE_3068 NC_008358.1 3243090 3244175 R identified by match to protein family HMM PF00144; beta-lactamase complement(3243090..3244175) Hyphomonas neptunium ATCC 15444 4287835 YP_761745.1 CDS HNE_3069 NC_008358.1 3244228 3244884 R identified by match to protein family HMM PF01037; AsnC family transcriptional regulator complement(3244228..3244884) Hyphomonas neptunium ATCC 15444 4288897 YP_761746.1 CDS HNE_3070 NC_008358.1 3244853 3248314 D Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 3244853..3248314 Hyphomonas neptunium ATCC 15444 4287919 YP_761747.1 CDS HNE_3071 NC_008358.1 3248406 3248738 R hypothetical protein complement(3248406..3248738) Hyphomonas neptunium ATCC 15444 4288149 YP_761748.1 CDS lysK NC_008358.1 3248802 3250394 R class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase complement(3248802..3250394) Hyphomonas neptunium ATCC 15444 4288383 YP_761749.1 CDS HNE_3073 NC_008358.1 3250554 3251003 D hypothetical protein 3250554..3251003 Hyphomonas neptunium ATCC 15444 4287800 YP_761750.1 CDS HNE_3074 NC_008358.1 3251007 3251234 D identified by match to protein family HMM PF01381; DNA-binding protein 3251007..3251234 Hyphomonas neptunium ATCC 15444 4289267 YP_761751.1 CDS HNE_3075 NC_008358.1 3251298 3251516 D identified by match to protein family HMM PF04324; BFD/(2Fe-2S)-binding domain-containing protein 3251298..3251516 Hyphomonas neptunium ATCC 15444 4289113 YP_761752.1 CDS bfr NC_008358.1 3251720 3252205 D identified by similarity to SP:P11056; match to protein family HMM PF00210; match to protein family HMM TIGR00754; bacterioferritin 3251720..3252205 Hyphomonas neptunium ATCC 15444 4289406 YP_761753.1 CDS HNE_3077 NC_008358.1 3252303 3253205 D identified by match to protein family HMM PF04402; hypothetical protein 3252303..3253205 Hyphomonas neptunium ATCC 15444 4290371 YP_761754.1 CDS HNE_3078 NC_008358.1 3253377 3253751 D identified by similarity to OMNI:NTL01AT1976; hypothetical protein 3253377..3253751 Hyphomonas neptunium ATCC 15444 4287562 YP_761755.1 CDS HNE_3079 NC_008358.1 3253828 3254964 R identified by match to protein family HMM PF00441; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein complement(3253828..3254964) Hyphomonas neptunium ATCC 15444 4287751 YP_761756.1 CDS HNE_3080 NC_008358.1 3255025 3256239 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; acyl-CoA dehydrogenase family protein complement(3255025..3256239) Hyphomonas neptunium ATCC 15444 4288269 YP_761757.1 CDS HNE_3081 NC_008358.1 3256392 3256835 R hypothetical protein complement(3256392..3256835) Hyphomonas neptunium ATCC 15444 4290225 YP_761758.1 CDS HNE_3082 NC_008358.1 3256990 3258600 D identified by match to protein family HMM PF00875; match to protein family HMM PF03441; deoxyribodipyrimidine photolyase family protein 3256990..3258600 Hyphomonas neptunium ATCC 15444 4287810 YP_761759.1 CDS HNE_3083 NC_008358.1 3259246 3259551 D hypothetical protein 3259246..3259551 Hyphomonas neptunium ATCC 15444 4286991 YP_761760.1 CDS HNE_3084 NC_008358.1 3259667 3260194 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(3259667..3260194) Hyphomonas neptunium ATCC 15444 4288568 YP_761761.1 CDS HNE_3085 NC_008358.1 3260814 3261560 D in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator 3260814..3261560 Hyphomonas neptunium ATCC 15444 4289186 YP_761762.1 CDS HNE_3086 NC_008358.1 3261574 3262566 R identified by match to protein family HMM PF00989; match to protein family HMM PF07536; match to protein family HMM TIGR00229; putative sensory box sensor histidine kinase complement(3261574..3262566) Hyphomonas neptunium ATCC 15444 4287926 YP_761763.1 CDS HNE_3087 NC_008358.1 3262742 3263701 D identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367; K+-dependent Na+/Ca+ exchanger-like protein 3262742..3263701 Hyphomonas neptunium ATCC 15444 4287682 YP_761764.1 CDS HNE_3088 NC_008358.1 3263667 3264614 D identified by match to protein family HMM PF00892; hypothetical protein 3263667..3264614 Hyphomonas neptunium ATCC 15444 4290116 YP_761765.1 CDS HNE_3089 NC_008358.1 3264659 3266527 D identified by similarity to SP:P33116; match to protein family HMM PF00005; ABC transporter permease/ATP-binding protein 3264659..3266527 Hyphomonas neptunium ATCC 15444 4288510 YP_761766.1 CDS HNE_3090 NC_008358.1 3266720 3268330 D putative lipoprotein 3266720..3268330 Hyphomonas neptunium ATCC 15444 4289845 YP_761767.1 CDS ilvE NC_008358.1 3268335 3269219 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(3268335..3269219) Hyphomonas neptunium ATCC 15444 4289452 YP_761768.1 CDS HNE_3092 NC_008358.1 3269273 3269737 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3269273..3269737 Hyphomonas neptunium ATCC 15444 4288909 YP_761769.1 CDS ompR NC_008358.1 3269748 3270437 D identified by similarity to SP:P31079; match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator OmpR 3269748..3270437 Hyphomonas neptunium ATCC 15444 4288500 YP_761770.1 CDS HNE_3094 NC_008358.1 3270446 3271741 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 3270446..3271741 Hyphomonas neptunium ATCC 15444 4288630 YP_761771.1 CDS HNE_3095 NC_008358.1 3271774 3273315 D identified by match to protein family HMM PF00795; carbon-nitrogen family hydrolase 3271774..3273315 Hyphomonas neptunium ATCC 15444 4288098 YP_761772.1 CDS phhB NC_008358.1 3273319 3273609 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(3273319..3273609) Hyphomonas neptunium ATCC 15444 4288003 YP_761773.1 CDS HNE_3097 NC_008358.1 3273613 3274206 R putative lipoprotein complement(3273613..3274206) Hyphomonas neptunium ATCC 15444 4290321 YP_761774.1 CDS HNE_3098 NC_008358.1 3274193 3274879 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR02247; putative phosphatase complement(3274193..3274879) Hyphomonas neptunium ATCC 15444 4287380 YP_761775.1 CDS HNE_3099 NC_008358.1 3274957 3275874 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 3274957..3275874 Hyphomonas neptunium ATCC 15444 4288882 YP_761776.1 CDS HNE_3100 NC_008358.1 3275958 3276335 R hypothetical protein complement(3275958..3276335) Hyphomonas neptunium ATCC 15444 4289173 YP_761777.1 CDS HNE_3101 NC_008358.1 3276686 3277624 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne5, transposase 3276686..3277624 Hyphomonas neptunium ATCC 15444 4290123 YP_761778.1 CDS mtgA NC_008358.1 3277883 3279016 R identified by match to protein family HMM PF00912; match to protein family HMM TIGR02070; monofunctional biosynthetic peptidoglycan transglycosylase complement(3277883..3279016) Hyphomonas neptunium ATCC 15444 4289929 YP_761779.1 CDS HNE_3103 NC_008358.1 3279025 3280152 R identified by match to protein family HMM PF00037; putative iron-sulfur cluster binding protein complement(3279025..3280152) Hyphomonas neptunium ATCC 15444 4288033 YP_761780.1 CDS HNE_3104 NC_008358.1 3280133 3280810 R identified by match to protein family HMM PF00043; glutathione S-transferase complement(3280133..3280810) Hyphomonas neptunium ATCC 15444 4289583 YP_761781.1 CDS HNE_3105 NC_008358.1 3280878 3285602 R identified by match to protein family HMM PF05088; glutamate dehydrogenase complement(3280878..3285602) Hyphomonas neptunium ATCC 15444 4289586 YP_761782.1 CDS HNE_3106 NC_008358.1 3285977 3287065 R identified by match to protein family HMM PF01594; hypothetical protein complement(3285977..3287065) Hyphomonas neptunium ATCC 15444 4289865 YP_761783.1 CDS HNE_3107 NC_008358.1 3287214 3288770 D identified by similarity to GB:CAC45536.1; match to protein family HMM PF05872; hypothetical protein 3287214..3288770 Hyphomonas neptunium ATCC 15444 4289382 YP_761784.1 CDS HNE_3108 NC_008358.1 3288767 3288970 D putative lipoprotein 3288767..3288970 Hyphomonas neptunium ATCC 15444 4289001 YP_761785.1 CDS HNE_3109 NC_008358.1 3289091 3290521 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase family protein 3289091..3290521 Hyphomonas neptunium ATCC 15444 4289601 YP_761786.1 CDS HNE_3110 NC_008358.1 3290606 3291220 D identified by match to protein family HMM PF02798; glutathione S-transferase 3290606..3291220 Hyphomonas neptunium ATCC 15444 4289923 YP_761787.1 CDS HNE_3111 NC_008358.1 3291418 3291990 D identified by similarity to GB:AAK22112.1; putative lipoprotein 3291418..3291990 Hyphomonas neptunium ATCC 15444 4290386 YP_761788.1 CDS HNE_3112 NC_008358.1 3292012 3293583 R identified by match to protein family HMM PF00028; cadherin domain-containing protein complement(3292012..3293583) Hyphomonas neptunium ATCC 15444 4289644 YP_761789.1 CDS HNE_3113 NC_008358.1 3293840 3295039 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00710; Bcr/CflA subfamily drug resistance transporter 3293840..3295039 Hyphomonas neptunium ATCC 15444 4290174 YP_761790.1 CDS HNE_3114 NC_008358.1 3295048 3295962 R identified by match to protein family HMM TIGR00768; alpha-L-glutamate ligase complement(3295048..3295962) Hyphomonas neptunium ATCC 15444 4288417 YP_761791.1 CDS HNE_3115 NC_008358.1 3296520 3298514 R identified by match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641; putative methylmalonyl-CoA mutase complement(3296520..3298514) Hyphomonas neptunium ATCC 15444 4287623 YP_761792.1 CDS HNE_3116 NC_008358.1 3298548 3299201 D hypothetical protein 3298548..3299201 Hyphomonas neptunium ATCC 15444 4288148 YP_761793.1 CDS HNE_3117 NC_008358.1 3299198 3300088 R identified by match to protein family HMM PF01063; putative D-alanine aminotransferase complement(3299198..3300088) Hyphomonas neptunium ATCC 15444 4289112 YP_761794.1 CDS ccrA NC_008358.1 3300244 3301515 D identified by match to protein family HMM PF00107; match to protein family HMM TIGR01751; crotonyl-CoA reductase 3300244..3301515 Hyphomonas neptunium ATCC 15444 4287767 YP_761795.1 CDS HNE_3119 NC_008358.1 3301512 3301877 D identified by similarity to GB:CAH37602.1; hypothetical protein 3301512..3301877 Hyphomonas neptunium ATCC 15444 4287240 YP_761796.1 CDS HNE_3120 NC_008358.1 3301889 3302413 D identified by similarity to GB:AAP09809.1; hypothetical protein 3301889..3302413 Hyphomonas neptunium ATCC 15444 4287520 YP_761797.1 CDS HNE_3121 NC_008358.1 3302571 3303032 D identified by match to protein family HMM PF01047; MarR family transcriptional regulator 3302571..3303032 Hyphomonas neptunium ATCC 15444 4288573 YP_761798.1 CDS HNE_3123 NC_008358.1 3303048 3303506 R hypothetical protein complement(3303048..3303506) Hyphomonas neptunium ATCC 15444 4289117 YP_761799.1 CDS HNE_3122 NC_008358.1 3303072 3303473 D hypothetical protein 3303072..3303473 Hyphomonas neptunium ATCC 15444 4289543 YP_761800.1 CDS purA NC_008358.1 3303596 3304888 R identified by match to protein family HMM PF00709; match to protein family HMM TIGR00184; adenylosuccinate synthetase complement(3303596..3304888) Hyphomonas neptunium ATCC 15444 4287837 YP_761801.1 CDS HNE_3125 NC_008358.1 3304973 3305554 R identified by similarity to GB:AAK25066.1; hypothetical protein complement(3304973..3305554) Hyphomonas neptunium ATCC 15444 4289003 YP_761802.1 CDS serA NC_008358.1 3305657 3307252 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(3305657..3307252) Hyphomonas neptunium ATCC 15444 4287947 YP_761803.1 CDS HNE_3127 NC_008358.1 3307245 3307766 R identified by similarity to SP:P19650; match to protein family HMM PF00583; putative aminoglycoside N6'-acetyltransferase complement(3307245..3307766) Hyphomonas neptunium ATCC 15444 4288606 YP_761804.1 CDS HNE_3128 NC_008358.1 3308179 3309345 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(3308179..3309345) Hyphomonas neptunium ATCC 15444 4288574 YP_761805.1 CDS HNE_3129 NC_008358.1 3309453 3310091 R identified by similarity to GB:BAB50416.1; match to protein family HMM PF07947; hypothetical protein complement(3309453..3310091) Hyphomonas neptunium ATCC 15444 4289806 YP_761806.1 CDS HNE_3130 NC_008358.1 3310088 3310489 R identified by match to protein family HMM PF06803; hypothetical protein complement(3310088..3310489) Hyphomonas neptunium ATCC 15444 4287673 YP_761807.1 CDS HNE_3131 NC_008358.1 3310556 3311338 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family protein 3310556..3311338 Hyphomonas neptunium ATCC 15444 4288027 YP_761808.1 CDS HNE_3132 NC_008358.1 3311506 3312183 D identified by match to protein family HMM PF00881; nitroreductase family protein 3311506..3312183 Hyphomonas neptunium ATCC 15444 4288253 YP_761809.1 CDS HNE_3133 NC_008358.1 3312282 3313457 D identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; acetyl-CoA acyltransferase/thiolase family protein 3312282..3313457 Hyphomonas neptunium ATCC 15444 4290398 YP_761810.1 CDS HNE_3134 NC_008358.1 3313519 3313986 R identified by match to protein family HMM PF01575; MaoC domain-containing protein complement(3313519..3313986) Hyphomonas neptunium ATCC 15444 4288668 YP_761811.1 CDS HNE_3135 NC_008358.1 3314133 3314894 R identified by similarity to GB:AAL94753.1; hypothetical protein complement(3314133..3314894) Hyphomonas neptunium ATCC 15444 4288972 YP_761812.1 CDS HNE_3136 NC_008358.1 3315057 3315947 R identified by match to protein family HMM PF00487; fatty acid desaturase complement(3315057..3315947) Hyphomonas neptunium ATCC 15444 4289761 YP_761813.1 CDS HNE_3137 NC_008358.1 3316180 3317397 D hypothetical protein 3316180..3317397 Hyphomonas neptunium ATCC 15444 4288141 YP_761814.1 CDS HNE_3138 NC_008358.1 3317406 3318455 R identified by similarity to GB:AAD43134.1; match to protein family HMM PF04055; match to protein family HMM TIGR00238; putative L-lysine 2,3-aminomutase complement(3317406..3318455) Hyphomonas neptunium ATCC 15444 4287369 YP_761815.1 CDS HNE_3139 NC_008358.1 3318452 3319495 R identified by match to protein family HMM PF00152; tRNA synthetase, class II complement(3318452..3319495) Hyphomonas neptunium ATCC 15444 4288682 YP_761816.1 CDS efp NC_008358.1 3319629 3320201 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 3319629..3320201 Hyphomonas neptunium ATCC 15444 4287382 YP_761817.1 CDS HNE_3141 NC_008358.1 3320760 3321134 D identified by similarity to GB:BAC45363.1; hypothetical protein 3320760..3321134 Hyphomonas neptunium ATCC 15444 4290009 YP_761818.1 CDS HNE_3142 NC_008358.1 3321307 3322008 D identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator 3321307..3322008 Hyphomonas neptunium ATCC 15444 4290255 YP_761819.1 CDS HNE_3143 NC_008358.1 3322005 3324686 R identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229; sensory box sensor histidine kinase/response regulator complement(3322005..3324686) Hyphomonas neptunium ATCC 15444 4289508 YP_761820.1 CDS HNE_3144 NC_008358.1 3324716 3325267 R hypothetical protein complement(3324716..3325267) Hyphomonas neptunium ATCC 15444 4288232 YP_761821.1 CDS HNE_3146 NC_008358.1 3325621 3326712 R identified by match to protein family HMM PF00089; trypsin domain-containing lipoprotein complement(3325621..3326712) Hyphomonas neptunium ATCC 15444 4288349 YP_761822.1 CDS HNE_3147 NC_008358.1 3326709 3327707 R T4 family peptidase complement(3326709..3327707) Hyphomonas neptunium ATCC 15444 4287254 YP_761823.1 CDS ggt2 NC_008358.1 3327785 3329566 D identified by match to protein family HMM PF01019; gamma-glutamyltransferase 3327785..3329566 Hyphomonas neptunium ATCC 15444 4288952 YP_761824.1 CDS tdk NC_008358.1 3329589 3330176 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3329589..3330176 Hyphomonas neptunium ATCC 15444 4288172 YP_761825.1 CDS HNE_3150 NC_008358.1 3330212 3330868 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 3330212..3330868 Hyphomonas neptunium ATCC 15444 4287887 YP_761826.1 CDS HNE_3151 NC_008358.1 3330995 3331780 D identified by similarity to SP:Q44532; match to protein family HMM PF00970; match to protein family HMM PF08021; ferredoxin-NADP reductase family protein 3330995..3331780 Hyphomonas neptunium ATCC 15444 4289233 YP_761827.1 CDS HNE_3152 NC_008358.1 3331781 3332644 R identified by match to protein family HMM PF00520; cation channel family protein complement(3331781..3332644) Hyphomonas neptunium ATCC 15444 4289765 YP_761828.1 CDS HNE_3153 NC_008358.1 3332734 3333732 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(3332734..3333732) Hyphomonas neptunium ATCC 15444 4288037 YP_761829.1 CDS HNE_3154 NC_008358.1 3333874 3334521 R hypothetical protein complement(3333874..3334521) Hyphomonas neptunium ATCC 15444 4289932 YP_761830.1 CDS HNE_3155 NC_008358.1 3334570 3336636 R identified by similarity to SP:P36655; DsbD family thioredoxin complement(3334570..3336636) Hyphomonas neptunium ATCC 15444 4288900 YP_761831.1 CDS HNE_3156 NC_008358.1 3336875 3337669 R identified by match to protein family HMM PF07277; SapC family protein complement(3336875..3337669) Hyphomonas neptunium ATCC 15444 4289429 YP_761832.1 CDS HNE_3157 NC_008358.1 3337776 3339659 D identified by similarity to GB:AAK23989.1; match to protein family HMM PF05960; hypothetical protein 3337776..3339659 Hyphomonas neptunium ATCC 15444 4289473 YP_761833.1 CDS HNE_3158 NC_008358.1 3339687 3339998 D hypothetical protein 3339687..3339998 Hyphomonas neptunium ATCC 15444 4289793 YP_761834.1 CDS HNE_3159 NC_008358.1 3339690 3340028 R hypothetical protein complement(3339690..3340028) Hyphomonas neptunium ATCC 15444 4287345 YP_761835.1 CDS HNE_3160 NC_008358.1 3340207 3340542 R identified by similarity to GB:AAK25626.1; hypothetical protein complement(3340207..3340542) Hyphomonas neptunium ATCC 15444 4287812 YP_761836.1 CDS HNE_3161 NC_008358.1 3340811 3341428 R identified by match to protein family HMM TIGR02396; rpsU-divergently transcribed protein complement(3340811..3341428) Hyphomonas neptunium ATCC 15444 4287991 YP_761837.1 CDS rpsU NC_008358.1 3341564 3341773 D identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; 30S ribosomal protein S21 3341564..3341773 Hyphomonas neptunium ATCC 15444 4288709 YP_761838.1 CDS HNE_3163 NC_008358.1 3341939 3342643 D hypothetical protein 3341939..3342643 Hyphomonas neptunium ATCC 15444 4287920 YP_761839.1 CDS HNE_3164 NC_008358.1 3342654 3344045 R identified by similarity to GB:AAK25260.1; hypothetical protein complement(3342654..3344045) Hyphomonas neptunium ATCC 15444 4289018 YP_761840.1 CDS HNE_3165 NC_008358.1 3344045 3345016 R identified by similarity to GB:AAC36155.1; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(3344045..3345016) Hyphomonas neptunium ATCC 15444 4289715 YP_761841.1 CDS HNE_3166 NC_008358.1 3345051 3345143 R hypothetical protein complement(3345051..3345143) Hyphomonas neptunium ATCC 15444 4287844 YP_761842.1 CDS HNE_3167 NC_008358.1 3345156 3345458 R identified by similarity to GB:AAK25268.1; hypothetical protein complement(3345156..3345458) Hyphomonas neptunium ATCC 15444 4290445 YP_761843.1 CDS HNE_3168 NC_008358.1 3345569 3346021 R identified by match to protein family HMM PF06676; hypothetical protein complement(3345569..3346021) Hyphomonas neptunium ATCC 15444 4289159 YP_761844.1 CDS grxC NC_008358.1 3346034 3346294 R identified by match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 complement(3346034..3346294) Hyphomonas neptunium ATCC 15444 4288801 YP_761845.1 CDS HNE_3170 NC_008358.1 3346363 3347121 R identified by match to protein family HMM PF00156; ComF family protein complement(3346363..3347121) Hyphomonas neptunium ATCC 15444 4288578 YP_761846.1 CDS HNE_3171 NC_008358.1 3347132 3348043 D identified by similarity to GB:AAK22816.1; match to protein family HMM PF05401; hypothetical protein 3347132..3348043 Hyphomonas neptunium ATCC 15444 4289005 YP_761847.1 CDS HNE_3172 NC_008358.1 3348051 3348230 R identified by match to protein family HMM PF04964; flp/Fap pilus protein complement(3348051..3348230) Hyphomonas neptunium ATCC 15444 4288082 YP_761848.1 CDS HNE_3173 NC_008358.1 3348230 3348646 R identified by match to protein family HMM PF00293; match to protein family HMM TIGR00586; putative mutator mutT protein complement(3348230..3348646) Hyphomonas neptunium ATCC 15444 4287975 YP_761849.1 CDS argJ NC_008358.1 3348643 3349893 R identified by similarity to SP:P38434; match to protein family HMM PF01960; match to protein family HMM TIGR00120; arginine biosynthesis bifunctional protein ArgJ complement(3348643..3349893) Hyphomonas neptunium ATCC 15444 4287855 YP_761850.1 CDS HNE_3175 NC_008358.1 3349890 3350801 R identified by match to protein family HMM PF00639; peptidyl-prolyl cis-trans isomerase domain-containing protein complement(3349890..3350801) Hyphomonas neptunium ATCC 15444 4290134 YP_761851.1 CDS secA NC_008358.1 3350983 3353748 D identified by similarity to SP:P10408; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963; Preprotein translocase subunit SecA 3350983..3353748 Hyphomonas neptunium ATCC 15444 4289241 YP_761852.1 CDS HNE_3177 NC_008358.1 3353715 3354266 D hypothetical protein 3353715..3354266 Hyphomonas neptunium ATCC 15444 4290245 YP_761853.1 CDS HNE_3178 NC_008358.1 3354429 3355367 R identified by similarity to GB:BAC50594.1; match to protein family HMM PF00892; hypothetical protein complement(3354429..3355367) Hyphomonas neptunium ATCC 15444 4287627 YP_761854.1 CDS gap NC_008358.1 3355564 3356574 D identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I 3355564..3356574 Hyphomonas neptunium ATCC 15444 4290325 YP_761855.1 CDS pgk NC_008358.1 3356687 3357883 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3356687..3357883 Hyphomonas neptunium ATCC 15444 4290162 YP_761856.1 CDS fda NC_008358.1 3357986 3358879 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate in glycolysis; fructose-1,6-bisphosphate aldolase 3357986..3358879 Hyphomonas neptunium ATCC 15444 4288342 YP_761857.1 CDS HNE_3182 NC_008358.1 3358987 3359283 D identified by similarity to GB:BAB53320.1; hypothetical protein 3358987..3359283 Hyphomonas neptunium ATCC 15444 4287985 YP_761858.1 CDS HNE_3183 NC_008358.1 3359295 3359525 D identified by similarity to SP:P42878; match to protein family HMM PF06906; hypothetical protein 3359295..3359525 Hyphomonas neptunium ATCC 15444 4290120 YP_761859.1 CDS HNE_3184 NC_008358.1 3359559 3359831 R identified by similarity to GB:AAQ58256.1; hypothetical protein complement(3359559..3359831) Hyphomonas neptunium ATCC 15444 4289211 YP_761860.1 CDS thiE NC_008358.1 3359940 3360605 D identified by match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase 3359940..3360605 Hyphomonas neptunium ATCC 15444 4289215 YP_761861.1 CDS HNE_3186 NC_008358.1 3360625 3360921 R identified by similarity to GB:CAE29794.1; hypothetical protein complement(3360625..3360921) Hyphomonas neptunium ATCC 15444 4287109 YP_761862.1 CDS suhB NC_008358.1 3361091 3361912 D identified by similarity to SP:P22783; match to protein family HMM PF00459; inositol-1-monophosphatase 3361091..3361912 Hyphomonas neptunium ATCC 15444 4287915 YP_761863.1 CDS HNE_3188 NC_008358.1 3362042 3363541 D identified by similarity to GB:BAC51207.1; match to protein family HMM PF00743; hypothetical protein 3362042..3363541 Hyphomonas neptunium ATCC 15444 4289457 YP_761864.1 CDS HNE_3189 NC_008358.1 3363833 3364417 D hypothetical protein 3363833..3364417 Hyphomonas neptunium ATCC 15444 4290250 YP_761865.1 CDS HNE_3190 NC_008358.1 3364547 3365722 D identified by match to protein family HMM PF00665; ISHne2, transposase 3364547..3365722 Hyphomonas neptunium ATCC 15444 4290491 YP_761866.1 CDS HNE_3191 NC_008358.1 3365876 3366064 D hypothetical protein 3365876..3366064 Hyphomonas neptunium ATCC 15444 4288791 YP_761867.1 CDS HNE_3192 NC_008358.1 3366046 3367878 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; efflux ABC transporter permease/ATP-binding protein complement(3366046..3367878) Hyphomonas neptunium ATCC 15444 4290495 YP_761868.1 CDS rpmE NC_008358.1 3368052 3368270 D identified by match to protein family HMM TIGR00105; 50S ribosomal protein L31 3368052..3368270 Hyphomonas neptunium ATCC 15444 4289006 YP_761869.1 CDS HNE_3194 NC_008358.1 3368344 3369150 R identified by similarity to GB:AAF04376.1; match to protein family HMM PF00535; glycosyl transferase group 2 family protein complement(3368344..3369150) Hyphomonas neptunium ATCC 15444 4288843 YP_761870.1 CDS HNE_3195 NC_008358.1 3369147 3370430 R identified by match to protein family HMM PF04932; putative O-antigen polymerase complement(3369147..3370430) Hyphomonas neptunium ATCC 15444 4288357 YP_761871.1 CDS thrS NC_008358.1 3370437 3372410 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(3370437..3372410) Hyphomonas neptunium ATCC 15444 4290087 YP_761872.1 CDS HNE_3197 NC_008358.1 3372681 3373001 R identified by similarity to SP:Q89IV9; match to protein family HMM PF01809; hypothetical protein complement(3372681..3373001) Hyphomonas neptunium ATCC 15444 4289895 YP_761873.1 CDS HNE_3198 NC_008358.1 3373001 3373444 R identified by similarity to GB:BAC50788.1; hypothetical protein complement(3373001..3373444) Hyphomonas neptunium ATCC 15444 4290050 YP_761874.1 CDS HNE_3199 NC_008358.1 3373637 3374257 R identified by similarity to SP:Q52923; match to protein family HMM PF06055; ExoD family protein complement(3373637..3374257) Hyphomonas neptunium ATCC 15444 4288980 YP_761875.1 CDS HNE_3200 NC_008358.1 3374254 3374811 R identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein complement(3374254..3374811) Hyphomonas neptunium ATCC 15444 4289698 YP_761876.1 CDS cysS NC_008358.1 3374796 3376181 R identified by match to protein family HMM PF01406; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase complement(3374796..3376181) Hyphomonas neptunium ATCC 15444 4289575 YP_761877.1 CDS HNE_3202 NC_008358.1 3376206 3376436 D hypothetical protein 3376206..3376436 Hyphomonas neptunium ATCC 15444 4288438 YP_761878.1 CDS folE NC_008358.1 3376545 3377165 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 3376545..3377165 Hyphomonas neptunium ATCC 15444 4289238 YP_761879.1 CDS HNE_3204 NC_008358.1 3377229 3377948 R identified by similarity to SP:Q9ASR4; hypothetical protein complement(3377229..3377948) Hyphomonas neptunium ATCC 15444 4287993 YP_761880.1 CDS HNE_3205 NC_008358.1 3377959 3378864 R identified by match to protein family HMM PF01063; putative branched-chain amino acid aminotransferase complement(3377959..3378864) Hyphomonas neptunium ATCC 15444 4288215 YP_761881.1 CDS HNE_3206 NC_008358.1 3378888 3379649 R identified by similarity to GB:BAB48463.1; hypothetical protein complement(3378888..3379649) Hyphomonas neptunium ATCC 15444 4287779 YP_761882.1 CDS HNE_3207 NC_008358.1 3379671 3380186 R identified by similarity to GB:AAF79926.1; match to protein family HMM PF00293; NUDIX family hydrolase complement(3379671..3380186) Hyphomonas neptunium ATCC 15444 4289050 YP_761883.1 CDS HNE_3208 NC_008358.1 3380183 3381472 R identified by similarity to GB:BAC45700.1; match to protein family HMM PF04748; hypothetical protein complement(3380183..3381472) Hyphomonas neptunium ATCC 15444 4289803 YP_761884.1 CDS HNE_3209 NC_008358.1 3381599 3382948 R identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxyl-terminal protease complement(3381599..3382948) Hyphomonas neptunium ATCC 15444 4289871 YP_761885.1 CDS HNE_3210 NC_008358.1 3382981 3384216 R identified by match to protein family HMM PF01551; M23 family peptidase complement(3382981..3384216) Hyphomonas neptunium ATCC 15444 4288651 YP_761886.1 CDS HNE_3211 NC_008358.1 3384234 3384848 R hypothetical protein complement(3384234..3384848) Hyphomonas neptunium ATCC 15444 4290091 YP_761887.1 CDS HNE_3212 NC_008358.1 3384975 3385286 D hypothetical protein 3384975..3385286 Hyphomonas neptunium ATCC 15444 4289945 YP_761888.1 CDS HNE_3213 NC_008358.1 3385406 3385702 D identified by similarity to GB:AAK24731.1; hypothetical protein 3385406..3385702 Hyphomonas neptunium ATCC 15444 4288335 YP_761889.1 CDS HNE_3214 NC_008358.1 3385812 3386441 R hypothetical protein complement(3385812..3386441) Hyphomonas neptunium ATCC 15444 4287337 YP_761890.1 CDS HNE_3215 NC_008358.1 3386512 3387051 R identified by match to protein family HMM PF00583; acetyltransferase complement(3386512..3387051) Hyphomonas neptunium ATCC 15444 4288533 YP_761891.1 CDS HNE_3216 NC_008358.1 3387065 3387520 R putative lipoprotein complement(3387065..3387520) Hyphomonas neptunium ATCC 15444 4289735 YP_761892.1 CDS HNE_3217 NC_008358.1 3387610 3387912 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase domain-containing protein complement(3387610..3387912) Hyphomonas neptunium ATCC 15444 4287416 YP_761893.1 CDS mdh NC_008358.1 3387921 3388883 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(3387921..3388883) Hyphomonas neptunium ATCC 15444 4290204 YP_761894.1 CDS HNE_3219 NC_008358.1 3389030 3389803 R identified by similarity to SP:Q9A2A3; hypothetical protein complement(3389030..3389803) Hyphomonas neptunium ATCC 15444 4287359 YP_761895.1 CDS HNE_3220 NC_008358.1 3390182 3390514 D identified by similarity to GB:BAB48836.1; hypothetical protein 3390182..3390514 Hyphomonas neptunium ATCC 15444 4288946 YP_761896.1 CDS HNE_3221 NC_008358.1 3390587 3391147 D identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258; 2'-5' RNA ligase 3390587..3391147 Hyphomonas neptunium ATCC 15444 4288708 YP_761897.1 CDS HNE_3223 NC_008358.1 3391323 3391955 D identified by similarity to SP:Q52923; match to protein family HMM PF06055; ExoD family protein 3391323..3391955 Hyphomonas neptunium ATCC 15444 4288180 YP_761898.1 CDS HNE_3224 NC_008358.1 3392005 3392523 D identified by similarity to GB:AAK24167.1; hypothetical protein 3392005..3392523 Hyphomonas neptunium ATCC 15444 4288315 YP_761899.1 CDS HNE_3225 NC_008358.1 3392543 3393706 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028; acyl-CoA dehydrogenase family protein complement(3392543..3393706) Hyphomonas neptunium ATCC 15444 4290427 YP_761900.1 CDS HNE_3226 NC_008358.1 3393819 3395690 R identified by match to protein family HMM PF05960; putative lipoprotein complement(3393819..3395690) Hyphomonas neptunium ATCC 15444 4288830 YP_761901.1 CDS hemC NC_008358.1 3395793 3396758 D identified by match to protein family HMM PF01379; match to protein family HMM PF03900; match to protein family HMM TIGR00212; porphobilinogen deaminase 3395793..3396758 Hyphomonas neptunium ATCC 15444 4288448 YP_761902.1 CDS hemD NC_008358.1 3396755 3397468 D identified by match to protein family HMM PF02602; uroporphyrinogen-III synthase 3396755..3397468 Hyphomonas neptunium ATCC 15444 4288727 YP_761903.1 CDS HNE_3229 NC_008358.1 3397538 3398611 D hypothetical protein 3397538..3398611 Hyphomonas neptunium ATCC 15444 4290285 YP_761904.1 CDS HNE_3230 NC_008358.1 3398617 3400053 D identified by match to protein family HMM PF07219; HemY domain-containing protein 3398617..3400053 Hyphomonas neptunium ATCC 15444 4288164 YP_761905.1 CDS HNE_3232 NC_008358.1 3400244 3400954 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 3400244..3400954 Hyphomonas neptunium ATCC 15444 4289047 YP_761906.1 CDS HNE_3233 NC_008358.1 3400965 3401783 R identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654; PhzF family phenazine biosynthesis protein complement(3400965..3401783) Hyphomonas neptunium ATCC 15444 4287513 YP_761907.1 CDS thiD NC_008358.1 3401871 3402689 R identified by match to protein family HMM TIGR00097; phosphomethylpyrimidine kinase complement(3401871..3402689) Hyphomonas neptunium ATCC 15444 4289794 YP_761908.1 CDS HNE_3235 NC_008358.1 3402695 3403345 R identified by match to protein family HMM PF00923; match to protein family HMM TIGR00875; putative transaldolase complement(3402695..3403345) Hyphomonas neptunium ATCC 15444 4287533 YP_761909.1 CDS HNE_3236 NC_008358.1 3403379 3404689 R identified by match to protein family HMM PF00070; match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02737; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose dehydrogenase complement(3403379..3404689) Hyphomonas neptunium ATCC 15444 4289861 YP_761910.1 CDS HNE_3237 NC_008358.1 3404841 3405467 D identified by match to protein family HMM PF02798; glutathione S-transferase 3404841..3405467 Hyphomonas neptunium ATCC 15444 4289537 YP_761911.1 CDS HNE_3238 NC_008358.1 3405496 3407013 R identified by similarity to SP:P26276; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; putative phosphoglucomutase/phosphomannomutase complement(3405496..3407013) Hyphomonas neptunium ATCC 15444 4288101 YP_761912.1 CDS HNE_3239 NC_008358.1 3407233 3408018 D identified by match to protein family HMM PF01617; surface antigen family protein 3407233..3408018 Hyphomonas neptunium ATCC 15444 4290378 YP_761913.1 CDS HNE_3240 NC_008358.1 3408015 3408746 R identified by match to protein family HMM PF00117; class I glutamine amidotransferase domain-containing protein complement(3408015..3408746) Hyphomonas neptunium ATCC 15444 4288301 YP_761914.1 CDS HNE_3241 NC_008358.1 3408743 3410611 R identified by similarity to GB:BAB70471.1; match to protein family HMM PF00005; putative multidrug ABC transporter permease/ATP-binding protein complement(3408743..3410611) Hyphomonas neptunium ATCC 15444 4289802 YP_761915.1 CDS HNE_3242 NC_008358.1 3410675 3412318 R identified by similarity to GB:AAK23040.1; match to protein family HMM PF05960; hypothetical protein complement(3410675..3412318) Hyphomonas neptunium ATCC 15444 4288449 YP_761916.1 CDS sdhC NC_008358.1 3412514 3412912 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02970; succinate dehydrogenase, cytochrome b556 subunit 3412514..3412912 Hyphomonas neptunium ATCC 15444 4288770 YP_761917.1 CDS sdhD NC_008358.1 3412923 3413312 D identified by match to protein family HMM PF01127; match to protein family HMM TIGR02968; succinate dehydrogenase, hydrophobic membrane anchor protein 3412923..3413312 Hyphomonas neptunium ATCC 15444 4288911 YP_761918.1 CDS sdhA NC_008358.1 3413339 3415126 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 3413339..3415126 Hyphomonas neptunium ATCC 15444 4288246 YP_761919.1 CDS HNE_3246 NC_008358.1 3415160 3415459 D identified by similarity to GB:AAR02143.1; hypothetical protein 3415160..3415459 Hyphomonas neptunium ATCC 15444 4289200 YP_761920.1 CDS sdhB NC_008358.1 3415494 3416276 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 3415494..3416276 Hyphomonas neptunium ATCC 15444 4290101 YP_761921.1 CDS HNE_3248 NC_008358.1 3416546 3417484 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 3416546..3417484 Hyphomonas neptunium ATCC 15444 4287053 YP_761922.1 CDS HNE_3249 NC_008358.1 3417711 3418109 D hypothetical protein 3417711..3418109 Hyphomonas neptunium ATCC 15444 4288925 YP_761923.1 CDS HNE_3250 NC_008358.1 3418314 3418613 D hypothetical protein 3418314..3418613 Hyphomonas neptunium ATCC 15444 4288874 YP_761924.1 CDS HNE_3251 NC_008358.1 3418733 3419026 D identified by similarity to GB:BAC47510.1; hypothetical protein 3418733..3419026 Hyphomonas neptunium ATCC 15444 4289712 YP_761925.1 CDS HNE_3252 NC_008358.1 3419055 3419303 R hypothetical protein complement(3419055..3419303) Hyphomonas neptunium ATCC 15444 4289893 YP_761926.1 CDS HNE_3253 NC_008358.1 3419300 3420187 R identified by match to protein family HMM PF00763; match to protein family HMM PF02882; putative FolD bifunctional protein complement(3419300..3420187) Hyphomonas neptunium ATCC 15444 4287737 YP_761927.1 CDS HNE_3254 NC_008358.1 3420168 3420467 R identified by similarity to SP:Q98EP2; match to protein family HMM PF02594; hypothetical protein complement(3420168..3420467) Hyphomonas neptunium ATCC 15444 4287850 YP_761928.1 CDS HNE_3255 NC_008358.1 3420489 3420797 R identified by similarity to GB:CAE25859.1; match to protein family HMM PF02325; hypothetical protein complement(3420489..3420797) Hyphomonas neptunium ATCC 15444 4287283 YP_761929.1 CDS HNE_3256 NC_008358.1 3420990 3422183 D identified by match to protein family HMM PF07690; major facilitator family transporter 3420990..3422183 Hyphomonas neptunium ATCC 15444 4290032 YP_761930.1 CDS HNE_3257 NC_008358.1 3422336 3423523 D identified by match to protein family HMM PF07690; major facilitator family transporter 3422336..3423523 Hyphomonas neptunium ATCC 15444 4290480 YP_761931.1 CDS HNE_3258 NC_008358.1 3423520 3424251 R putative lipoprotein complement(3423520..3424251) Hyphomonas neptunium ATCC 15444 4290058 YP_761932.1 CDS HNE_3259 NC_008358.1 3424306 3425079 R identified by similarity to SP:P50198; match to protein family HMM PF00106; short chain dehydrogenase complement(3424306..3425079) Hyphomonas neptunium ATCC 15444 4290311 YP_761933.1 CDS HNE_3260 NC_008358.1 3425220 3425870 D hypothetical protein 3425220..3425870 Hyphomonas neptunium ATCC 15444 4289351 YP_761934.1 CDS HNE_3261 NC_008358.1 3425939 3426301 D hypothetical protein 3425939..3426301 Hyphomonas neptunium ATCC 15444 4287061 YP_761935.1 CDS lpdA2 NC_008358.1 3426395 3427798 D identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF02852; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01350; dihydrolipoamide dehydrogenase 3426395..3427798 Hyphomonas neptunium ATCC 15444 4289228 YP_761936.1 CDS HNE_3263 NC_008358.1 3427821 3428372 D identified by match to protein family HMM PF00583; acetyltransferase 3427821..3428372 Hyphomonas neptunium ATCC 15444 4287775 YP_761937.1 CDS HNE_3264 NC_008358.1 3428377 3429714 D identified by similarity to GB:AAS82622.1; hypothetical protein 3428377..3429714 Hyphomonas neptunium ATCC 15444 4290168 YP_761938.1 CDS HNE_3265 NC_008358.1 3429721 3429951 R identified by similarity to GB:AAN56986.1; hypothetical protein complement(3429721..3429951) Hyphomonas neptunium ATCC 15444 4288994 YP_761939.1 CDS HNE_3266 NC_008358.1 3430013 3430216 R hypothetical protein complement(3430013..3430216) Hyphomonas neptunium ATCC 15444 4288782 YP_761940.1 CDS dut NC_008358.1 3430329 3430784 R identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(3430329..3430784) Hyphomonas neptunium ATCC 15444 4289892 YP_761941.1 CDS coaBC NC_008358.1 3430830 3432056 R identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(3430830..3432056) Hyphomonas neptunium ATCC 15444 4287450 YP_761942.1 CDS HNE_3269 NC_008358.1 3432173 3432505 R hypothetical protein complement(3432173..3432505) Hyphomonas neptunium ATCC 15444 4289449 YP_761943.1 CDS HNE_3270 NC_008358.1 3432635 3433081 R identified by similarity to GB:AAM36436.1; match to protein family HMM PF04828; hypothetical protein complement(3432635..3433081) Hyphomonas neptunium ATCC 15444 4290042 YP_761944.1 CDS ubiB NC_008358.1 3433142 3434665 R identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982; 2-polyprenylphenol 6-hydroxylase complement(3433142..3434665) Hyphomonas neptunium ATCC 15444 4288166 YP_761945.1 CDS HNE_3272 NC_008358.1 3434685 3434915 D hypothetical protein 3434685..3434915 Hyphomonas neptunium ATCC 15444 4290471 YP_761946.1 CDS ubiE NC_008358.1 3434927 3435715 R identified by similarity to SP:P27851; match to protein family HMM PF01170; match to protein family HMM PF01209; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methyltransferase UbiE complement(3434927..3435715) Hyphomonas neptunium ATCC 15444 4290455 YP_761947.1 CDS mutM NC_008358.1 3435714 3436607 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 3435714..3436607 Hyphomonas neptunium ATCC 15444 4289948 YP_761948.1 CDS HNE_3275 NC_008358.1 3436604 3437806 R identified by match to protein family HMM PF01266; match to protein family HMM PF01494; FAD-dependent oxidoreductase complement(3436604..3437806) Hyphomonas neptunium ATCC 15444 4287994 YP_761949.1 CDS HNE_3276 NC_008358.1 3437881 3438843 R hypothetical protein complement(3437881..3438843) Hyphomonas neptunium ATCC 15444 4287057 YP_761950.1 CDS HNE_3277 NC_008358.1 3438916 3440067 R identified by similarity to GB:AAG61032.1; match to protein family HMM PF00441; match to protein family HMM PF08028; putative hydrolase NrgC complement(3438916..3440067) Hyphomonas neptunium ATCC 15444 4289994 YP_761951.1 CDS HNE_3278 NC_008358.1 3440070 3441809 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein complement(3440070..3441809) Hyphomonas neptunium ATCC 15444 4287362 YP_761952.1 CDS HNE_3279 NC_008358.1 3441884 3442234 R identified by similarity to GB:CAC45584.1; hypothetical protein complement(3441884..3442234) Hyphomonas neptunium ATCC 15444 4288823 YP_761953.1 CDS HNE_3280 NC_008358.1 3442231 3443337 R hypothetical protein complement(3442231..3443337) Hyphomonas neptunium ATCC 15444 4287433 YP_761954.1 CDS HNE_3281 NC_008358.1 3443354 3444241 R identified by match to protein family HMM PF01553; acyltransferase domain-containing protein complement(3443354..3444241) Hyphomonas neptunium ATCC 15444 4287809 YP_761955.1 CDS HNE_3282 NC_008358.1 3444241 3445401 R identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; acyl-CoA dehydrogenase complement(3444241..3445401) Hyphomonas neptunium ATCC 15444 4288456 YP_761956.1 CDS metA NC_008358.1 3445416 3446333 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3445416..3446333) Hyphomonas neptunium ATCC 15444 4288555 YP_761957.1 CDS HNE_3284 NC_008358.1 3446538 3447350 R identified by match to protein family HMM PF00378; enoyl-CoA hydratase/isomerase domain-containing protein complement(3446538..3447350) Hyphomonas neptunium ATCC 15444 4289426 YP_761958.1 CDS HNE_3285 NC_008358.1 3447492 3448142 D identified by similarity to SP:Q52923; match to protein family HMM PF06055; ExoD family protein 3447492..3448142 Hyphomonas neptunium ATCC 15444 4287617 YP_761959.1 CDS HNE_3286 NC_008358.1 3448157 3448504 D identified by similarity to GB:BAC46552.1; hypothetical protein 3448157..3448504 Hyphomonas neptunium ATCC 15444 4287596 YP_761960.1 CDS fabK NC_008358.1 3448581 3449519 D identified by similarity to GB:AAF98273.1; match to protein family HMM PF00478; match to protein family HMM PF03060; trans-2-enoyl-ACP reductase II 3448581..3449519 Hyphomonas neptunium ATCC 15444 4289942 YP_761961.1 CDS dcp NC_008358.1 3449649 3451829 D identified by similarity to SP:P24171; match to protein family HMM PF01432; peptidyl-dipeptidase 3449649..3451829 Hyphomonas neptunium ATCC 15444 4288343 YP_761962.1 CDS HNE_3289 NC_008358.1 3451907 3452374 R identified by match to protein family HMM PF00359; sugar phosphotransferase system (PTS),mannose/fructose family protein complement(3451907..3452374) Hyphomonas neptunium ATCC 15444 4289943 YP_761963.1 CDS HNE_3290 NC_008358.1 3452401 3452997 R identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741; hypothetical protein complement(3452401..3452997) Hyphomonas neptunium ATCC 15444 4290452 YP_761964.1 CDS HNE_3291 NC_008358.1 3453225 3455342 R hypothetical protein complement(3453225..3455342) Hyphomonas neptunium ATCC 15444 4287039 YP_761965.1 CDS pspF NC_008358.1 3455430 3456536 R identified by similarity to SP:P37344; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199; psp operon transcription activator complement(3455430..3456536) Hyphomonas neptunium ATCC 15444 4287019 YP_761966.1 CDS HNE_3293 NC_008358.1 3456687 3456878 D hypothetical protein 3456687..3456878 Hyphomonas neptunium ATCC 15444 4288802 YP_761967.1 CDS pspA NC_008358.1 3456904 3457584 D identified by similarity to SP:P23853; match to protein family HMM PF04012; match to protein family HMM TIGR02977; phage shock protein A 3456904..3457584 Hyphomonas neptunium ATCC 15444 4288640 YP_761968.1 CDS pspB NC_008358.1 3457698 3457955 D phage shock protein B 3457698..3457955 Hyphomonas neptunium ATCC 15444 4289751 YP_761969.1 CDS pspC NC_008358.1 3457967 3458383 D identified by similarity to SP:P23855; match to protein family HMM PF04024; match to protein family HMM TIGR02978; phage shock protein C 3457967..3458383 Hyphomonas neptunium ATCC 15444 4287231 YP_761970.1 CDS HNE_3297 NC_008358.1 3458431 3458616 D hypothetical protein 3458431..3458616 Hyphomonas neptunium ATCC 15444 4289405 YP_761971.1 CDS HNE_3298 NC_008358.1 3458613 3460433 R identified by match to protein family HMM PF01266; match to protein family HMM PF05430; FAD dependent oxidoreductase domain-containing protein complement(3458613..3460433) Hyphomonas neptunium ATCC 15444 4288020 YP_761972.1 CDS HNE_3299 NC_008358.1 3460578 3460865 D identified by similarity to GB:CAC47295.1; hypothetical protein 3460578..3460865 Hyphomonas neptunium ATCC 15444 4288921 YP_761973.1 CDS HNE_3300 NC_008358.1 3460891 3461139 D identified by similarity to GB:AAT43525.1; hypothetical protein 3460891..3461139 Hyphomonas neptunium ATCC 15444 4289292 YP_761974.1 CDS HNE_3301 NC_008358.1 3461136 3461414 D identified by similarity to GB:AAM40706.1; hypothetical protein 3461136..3461414 Hyphomonas neptunium ATCC 15444 4287630 YP_761975.1 CDS HNE_3302 NC_008358.1 3461419 3461868 D identified by similarity to SP:Q88E79; match to protein family HMM PF05779; hypothetical protein 3461419..3461868 Hyphomonas neptunium ATCC 15444 4287939 YP_761976.1 CDS HNE_3303 NC_008358.1 3461923 3462246 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 3461923..3462246 Hyphomonas neptunium ATCC 15444 4290249 YP_761977.1 CDS HNE_3304 NC_008358.1 3462243 3462461 D hypothetical protein 3462243..3462461 Hyphomonas neptunium ATCC 15444 4287012 YP_761978.1 CDS HNE_3305 NC_008358.1 3462468 3462893 D identified by similarity to PIR:C95983; hypothetical protein 3462468..3462893 Hyphomonas neptunium ATCC 15444 4290070 YP_761979.1 CDS HNE_3306 NC_008358.1 3462890 3463291 D identified by similarity to GB:BAC52018.1; hypothetical protein 3462890..3463291 Hyphomonas neptunium ATCC 15444 4288642 YP_761980.1 CDS HNE_3307 NC_008358.1 3463288 3463686 D identified by similarity to GB:BAB49428.1; hypothetical protein 3463288..3463686 Hyphomonas neptunium ATCC 15444 4289499 YP_761981.1 CDS HNE_3308 NC_008358.1 3463731 3464630 D identified by similarity to GB:CAA55226.1; match to protein family HMM PF00589; match to protein family HMM PF02899; putative tyrosine recombinase XerC 3463731..3464630 Hyphomonas neptunium ATCC 15444 4287656 YP_761982.1 CDS HNE_3309 NC_008358.1 3464637 3465809 R identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; putative oxygen-independent coproporphyrinogen III oxidase complement(3464637..3465809) Hyphomonas neptunium ATCC 15444 4287677 YP_761983.1 CDS rdgB NC_008358.1 3465806 3466462 R identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; non-canonical purine NTP pyrophosphatase complement(3465806..3466462) Hyphomonas neptunium ATCC 15444 4289399 YP_761984.1 CDS HNE_3311 NC_008358.1 3466585 3467079 D hypothetical protein 3466585..3467079 Hyphomonas neptunium ATCC 15444 4289099 YP_761985.1 CDS HNE_3312 NC_008358.1 3467095 3467334 D identified by match to protein family HMM PF01381; DNA-binding protein 3467095..3467334 Hyphomonas neptunium ATCC 15444 4287531 YP_761986.1 CDS HNE_3313 NC_008358.1 3467388 3468068 D identified by similarity to GB:AAG28336.1; putative satD protein 3467388..3468068 Hyphomonas neptunium ATCC 15444 4288645 YP_761987.1 CDS HNE_3314 NC_008358.1 3468055 3468444 D hypothetical protein 3468055..3468444 Hyphomonas neptunium ATCC 15444 4289995 YP_761988.1 CDS rph NC_008358.1 3468445 3469170 R identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966; ribonuclease PH complement(3468445..3469170) Hyphomonas neptunium ATCC 15444 4288161 YP_761989.1 CDS fhs NC_008358.1 3469261 3470931 D identified by match to protein family HMM PF01268; formate--tetrahydrofolate ligase 3469261..3470931 Hyphomonas neptunium ATCC 15444 4290287 YP_761990.1 CDS hrcA NC_008358.1 3470977 3472065 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 3470977..3472065 Hyphomonas neptunium ATCC 15444 4287950 YP_761991.1 CDS grpE NC_008358.1 3472065 3472631 D identified by match to protein family HMM PF01025; co-chaperone GrpE 3472065..3472631 Hyphomonas neptunium ATCC 15444 4289414 YP_761992.1 CDS HNE_3319 NC_008358.1 3472650 3473570 R hypothetical protein complement(3472650..3473570) Hyphomonas neptunium ATCC 15444 4288328 YP_761993.1 CDS HNE_3320 NC_008358.1 3473667 3473918 R identified by similarity to PIR:E83372; hypothetical protein complement(3473667..3473918) Hyphomonas neptunium ATCC 15444 4288387 YP_761994.1 CDS dnaK NC_008358.1 3474210 3476105 D identified by match to protein family HMM PF00012; match to protein family HMM TIGR02350; chaperone protein DnaK 3474210..3476105 Hyphomonas neptunium ATCC 15444 4287102 YP_761995.1 CDS HNE_3322 NC_008358.1 3476261 3476878 D hypothetical protein 3476261..3476878 Hyphomonas neptunium ATCC 15444 4287845 YP_761996.1 CDS HNE_3323 NC_008358.1 3476925 3477914 R identified by similarity to SP:Q08257; match to protein family HMM PF00107; putative quinone oxidoreductase complement(3476925..3477914) Hyphomonas neptunium ATCC 15444 4289504 YP_761997.1 CDS HNE_3324 NC_008358.1 3478012 3478884 D identified by match to protein family HMM PF01112; putative asparaginase 3478012..3478884 Hyphomonas neptunium ATCC 15444 4289374 YP_761998.1 CDS HNE_3325 NC_008358.1 3478881 3479201 D hypothetical protein 3478881..3479201 Hyphomonas neptunium ATCC 15444 4287354 YP_761999.1 CDS HNE_3326 NC_008358.1 3479201 3479734 D identified by match to protein family HMM PF00588; RNA methyltransferase 3479201..3479734 Hyphomonas neptunium ATCC 15444 4287411 YP_762000.1 CDS HNE_3327 NC_008358.1 3479756 3480430 R identified by similarity to SP:P40685; match to protein family HMM PF07883; ChR family anti-sigma factor complement(3479756..3480430) Hyphomonas neptunium ATCC 15444 4287789 YP_762001.1 CDS HNE_3328 NC_008358.1 3480520 3481065 R identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; ECF subfamily RNA polymerase sigma factor complement(3480520..3481065) Hyphomonas neptunium ATCC 15444 4287839 YP_762002.1 CDS HNE_3329 NC_008358.1 3481255 3481788 D identified by similarity to PIR:AD3485; hypothetical protein 3481255..3481788 Hyphomonas neptunium ATCC 15444 4289663 YP_762003.1 CDS HNE_3330 NC_008358.1 3481862 3482497 R identified by match to protein family HMM PF00691; OmpA family protein complement(3481862..3482497) Hyphomonas neptunium ATCC 15444 4287935 YP_762004.1 CDS HNE_3331 NC_008358.1 3482686 3483849 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM protein 3482686..3483849 Hyphomonas neptunium ATCC 15444 4287206 YP_762005.1 CDS HNE_3332 NC_008358.1 3483860 3486091 R putative transporter complement(3483860..3486091) Hyphomonas neptunium ATCC 15444 4290484 YP_762006.1 CDS HNE_3333 NC_008358.1 3486211 3486960 D identified by similarity to GB:CAC46553.1; putative lipoprotein 3486211..3486960 Hyphomonas neptunium ATCC 15444 4287120 YP_762007.1 CDS HNE_3334 NC_008358.1 3486957 3487193 D identified by similarity to GB:AAO58762.1; hypothetical protein 3486957..3487193 Hyphomonas neptunium ATCC 15444 4290499 YP_762008.1 CDS HNE_3335 NC_008358.1 3487288 3487629 D identified by match to protein family HMM PF03960; ArsC family protein 3487288..3487629 Hyphomonas neptunium ATCC 15444 4287873 YP_762009.1 CDS HNE_3336 NC_008358.1 3487662 3487949 R hypothetical protein complement(3487662..3487949) Hyphomonas neptunium ATCC 15444 4289820 YP_762010.1 CDS HNE_3337 NC_008358.1 3488106 3488537 D identified by similarity to GB:AAS71203.1; hypothetical protein 3488106..3488537 Hyphomonas neptunium ATCC 15444 4287086 YP_762011.1 CDS thiC NC_008358.1 3488534 3490426 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 3488534..3490426 Hyphomonas neptunium ATCC 15444 4289813 YP_762012.1 CDS HNE_3339 NC_008358.1 3490490 3491263 D identified by similarity to GB:CAG41809.1; hypothetical protein 3490490..3491263 Hyphomonas neptunium ATCC 15444 4287028 YP_762013.1 CDS HNE_3340 NC_008358.1 3491365 3491541 R identified by similarity to GB:CAG20701.1; hypothetical protein complement(3491365..3491541) Hyphomonas neptunium ATCC 15444 4289541 YP_762014.1 CDS HNE_3341 NC_008358.1 3491745 3492119 R hypothetical protein complement(3491745..3492119) Hyphomonas neptunium ATCC 15444 4290523 YP_762015.1 CDS HNE_3342 NC_008358.1 3492226 3492348 D hypothetical protein 3492226..3492348 Hyphomonas neptunium ATCC 15444 4289403 YP_762016.1 CDS HNE_3343 NC_008358.1 3492323 3493147 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(3492323..3493147) Hyphomonas neptunium ATCC 15444 4289536 YP_762017.1 CDS HNE_3344 NC_008358.1 3493248 3494993 R putative lipoprotein complement(3493248..3494993) Hyphomonas neptunium ATCC 15444 4287931 YP_762018.1 CDS HNE_3345 NC_008358.1 3495062 3495781 D identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863; hypothetical protein 3495062..3495781 Hyphomonas neptunium ATCC 15444 4289694 YP_762019.1 CDS HNE_3346 NC_008358.1 3495903 3496433 R hypothetical protein complement(3495903..3496433) Hyphomonas neptunium ATCC 15444 4289889 YP_762020.1 CDS HNE_3347 NC_008358.1 3496498 3497373 R identified by similarity to GB:AAF35850.1; match to protein family HMM PF01618; chemotaxis MotA protein complement(3496498..3497373) Hyphomonas neptunium ATCC 15444 4287441 YP_762021.1 CDS HNE_3348 NC_008358.1 3497512 3498783 D identified by match to protein family HMM PF07690; drug:H+ antiporter-1 family protein 3497512..3498783 Hyphomonas neptunium ATCC 15444 4289653 YP_762022.1 CDS HNE_3349 NC_008358.1 3498804 3500108 R identified by match to protein family HMM PF01471; match to protein family HMM TIGR02283; lytic murein transglycosylase complement(3498804..3500108) Hyphomonas neptunium ATCC 15444 4288534 YP_762023.1 CDS rpmJ NC_008358.1 3500252 3500377 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 3500252..3500377 Hyphomonas neptunium ATCC 15444 4287763 YP_762024.1 CDS HNE_3351 NC_008358.1 3500409 3501017 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD family hydrolase 3500409..3501017 Hyphomonas neptunium ATCC 15444 4286987 YP_762025.1 CDS HNE_3352 NC_008358.1 3501087 3501623 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; hypothetical protein 3501087..3501623 Hyphomonas neptunium ATCC 15444 4288598 YP_762026.1 CDS HNE_3353 NC_008358.1 3501629 3502576 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3501629..3502576 Hyphomonas neptunium ATCC 15444 4289949 YP_762027.1 CDS HNE_3354 NC_008358.1 3502616 3502879 D identified by similarity to GB:BAB50739.1; hypothetical protein 3502616..3502879 Hyphomonas neptunium ATCC 15444 4290447 YP_762028.1 CDS HNE_3355 NC_008358.1 3502929 3503435 D hypothetical protein 3502929..3503435 Hyphomonas neptunium ATCC 15444 4288809 YP_762029.1 CDS HNE_3356 NC_008358.1 3503462 3504346 D identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase 3503462..3504346 Hyphomonas neptunium ATCC 15444 4289222 YP_762030.1 CDS HNE_3357 NC_008358.1 3504422 3505309 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short chain dehydrogenase/reductase family oxidoreductase 3504422..3505309 Hyphomonas neptunium ATCC 15444 4289470 YP_762031.1 CDS HNE_3358 NC_008358.1 3505300 3505614 R hypothetical protein complement(3505300..3505614) Hyphomonas neptunium ATCC 15444 4290542 YP_762032.1 CDS HNE_3359 NC_008358.1 3505583 3506545 D identified by similarity to PIR:AE3417; match to protein family HMM PF00892; putative transporter 3505583..3506545 Hyphomonas neptunium ATCC 15444 4289250 YP_762033.1 CDS HNE_3360 NC_008358.1 3506694 3507716 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 3506694..3507716 Hyphomonas neptunium ATCC 15444 4289622 YP_762034.1 CDS HNE_3361 NC_008358.1 3507891 3508355 D identified by similarity to GB:BAC50417.1; putative lipoprotein 3507891..3508355 Hyphomonas neptunium ATCC 15444 4287516 YP_762035.1 CDS HNE_3362 NC_008358.1 3508592 3509062 R hypothetical protein complement(3508592..3509062) Hyphomonas neptunium ATCC 15444 4289875 YP_762036.1 CDS HNE_3363 NC_008358.1 3509068 3509451 R identified by similarity to GB:CAC45517.1; hypothetical protein complement(3509068..3509451) Hyphomonas neptunium ATCC 15444 4287811 YP_762037.1 CDS HNE_3364 NC_008358.1 3509561 3510034 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(3509561..3510034) Hyphomonas neptunium ATCC 15444 4288927 YP_762038.1 CDS HNE_3365 NC_008358.1 3510290 3511120 D identified by similarity to SP:P25026; match to protein family HMM PF00561; chloride peroxidase 3510290..3511120 Hyphomonas neptunium ATCC 15444 4287479 YP_762039.1 CDS HNE_3366 NC_008358.1 3511193 3511402 R identified by similarity to GB:CAE25475.1; match to protein family HMM PF07896; hypothetical protein complement(3511193..3511402) Hyphomonas neptunium ATCC 15444 4288779 YP_762040.1 CDS HNE_3367 NC_008358.1 3511506 3512399 D putative metalloprotease; heat shock protein HtpX 3511506..3512399 Hyphomonas neptunium ATCC 15444 4289866 YP_762041.1 CDS HNE_3368 NC_008358.1 3512431 3513702 D identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM PF05175; putative ribosomal RNA small subunit methyltransferase B 3512431..3513702 Hyphomonas neptunium ATCC 15444 4290149 YP_762042.1 CDS HNE_3369 NC_008358.1 3513822 3514310 D identified by match to protein family HMM PF05433; putative lipoprotein 3513822..3514310 Hyphomonas neptunium ATCC 15444 4287558 YP_762043.1 CDS rpe NC_008358.1 3514452 3515120 D identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase 3514452..3515120 Hyphomonas neptunium ATCC 15444 4286989 YP_762044.1 CDS HNE_3371 NC_008358.1 3515148 3516875 D identified by match to protein family HMM PF07940; heparinase II/III-like family protein 3515148..3516875 Hyphomonas neptunium ATCC 15444 4287332 YP_762045.1 CDS purH NC_008358.1 3516969 3518558 D identified by match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; bifunctional purine biosynthesis protein PurH 3516969..3518558 Hyphomonas neptunium ATCC 15444 4289939 YP_762046.1 CDS HNE_3373 NC_008358.1 3518642 3518929 D putative lipoprotein 3518642..3518929 Hyphomonas neptunium ATCC 15444 4288339 YP_762047.1 CDS HNE_3374 NC_008358.1 3519321 3520220 R identified by similarity to GB:AAB50182.1; match to protein family HMM PF00682; putative hydroxymethylglutaryl-CoA lyase complement(3519321..3520220) Hyphomonas neptunium ATCC 15444 4288209 YP_762048.1 CDS HNE_3375 NC_008358.1 3520228 3521058 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(3520228..3521058) Hyphomonas neptunium ATCC 15444 4287125 YP_762049.1 CDS HNE_3376 NC_008358.1 3521179 3521574 D identified by match to protein family HMM PF01502; phosphoribosyl-AMP cyclohydrolase 3521179..3521574 Hyphomonas neptunium ATCC 15444 4287289 YP_762050.1 CDS HNE_3377 NC_008358.1 3521600 3522505 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family lipoprotein 3521600..3522505 Hyphomonas neptunium ATCC 15444 4287008 YP_762051.1 CDS HNE_3378 NC_008358.1 3522495 3524141 R identified by match to protein family HMM PF04087; hypothetical protein complement(3522495..3524141) Hyphomonas neptunium ATCC 15444 4287990 YP_762052.1 CDS HNE_3379 NC_008358.1 3524229 3525929 R identified by similarity to GB:AAL17673.1; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028; isobutyryl-CoA dehydrogenase complement(3524229..3525929) Hyphomonas neptunium ATCC 15444 4289276 YP_762053.1 CDS HNE_3380 NC_008358.1 3526058 3526876 R identified by match to protein family HMM PF00106; short chain dehydrogenase/reductase family oxidoreductase complement(3526058..3526876) Hyphomonas neptunium ATCC 15444 4288028 YP_762054.1 CDS HNE_3381 NC_008358.1 3527048 3529534 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 3527048..3529534 Hyphomonas neptunium ATCC 15444 4287995 YP_762055.1 CDS HNE_3382 NC_008358.1 3529672 3530499 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3529672..3530499 Hyphomonas neptunium ATCC 15444 4290171 YP_762056.1 CDS HNE_3383 NC_008358.1 3530504 3531475 R identified by match to protein family HMM PF04199; putative cyclase complement(3530504..3531475) Hyphomonas neptunium ATCC 15444 4290247 YP_762057.1 CDS HNE_3384 NC_008358.1 3531540 3532487 R identified by similarity to PIR:G83164; hypothetical protein complement(3531540..3532487) Hyphomonas neptunium ATCC 15444 4289705 YP_762058.1 CDS ada NC_008358.1 3532547 3533515 D identified by similarity to SP:P06134; match to protein family HMM PF00165; match to protein family HMM PF01035; match to protein family HMM TIGR00589; ADA regulatory protein 3532547..3533515 Hyphomonas neptunium ATCC 15444 4287568 YP_762059.1 CDS HNE_3386 NC_008358.1 3533598 3534056 D hypothetical protein 3533598..3534056 Hyphomonas neptunium ATCC 15444 4288858 YP_762060.1 CDS HNE_3387 NC_008358.1 3534053 3534526 D identified by match to protein family HMM PF00903; putative lactoylglutathione lyase 3534053..3534526 Hyphomonas neptunium ATCC 15444 4289362 YP_762061.1 CDS hpt NC_008358.1 3534658 3535182 R identified by similarity to SP:P37472; match to protein family HMM PF00156; hypoxanthine phosphoribosyltransferase complement(3534658..3535182) Hyphomonas neptunium ATCC 15444 4287406 YP_762062.1 CDS HNE_3389 NC_008358.1 3535188 3535934 R identified by match to protein family HMM TIGR02098; hypothetical protein complement(3535188..3535934) Hyphomonas neptunium ATCC 15444 4287326 YP_762063.1 CDS ftsE NC_008358.1 3536001 3536759 D identified by similarity to GB:AAK20881.1; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE 3536001..3536759 Hyphomonas neptunium ATCC 15444 4287959 YP_762064.1 CDS HNE_3391 NC_008358.1 3536756 3537628 D identified by match to protein family HMM PF02687; putative permease 3536756..3537628 Hyphomonas neptunium ATCC 15444 4287122 YP_762065.1 CDS HNE_3392 NC_008358.1 3537674 3538414 D identified by match to protein family HMM PF01553; putative 1-acyl-sn-glycerol-3-phosphate acyltransferase 3537674..3538414 Hyphomonas neptunium ATCC 15444 4289515 YP_762066.1 CDS HNE_3393 NC_008358.1 3538411 3539052 D identified by match to protein family HMM PF00730; putative DNA-3-methyladenine glycosylase 3538411..3539052 Hyphomonas neptunium ATCC 15444 4288503 YP_762067.1 CDS HNE_3394 NC_008358.1 3539176 3539769 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 3539176..3539769 Hyphomonas neptunium ATCC 15444 4287943 YP_762068.1 CDS HNE_3395 NC_008358.1 3539742 3541592 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase complement(3539742..3541592) Hyphomonas neptunium ATCC 15444 4290468 YP_762069.1 CDS HNE_3396 NC_008358.1 3541774 3542544 D identified by match to protein family HMM PF00535; glycosyl transferase group 2 family protein 3541774..3542544 Hyphomonas neptunium ATCC 15444 4288522 YP_762070.1 CDS HNE_3397 NC_008358.1 3542551 3543291 R identified by similarity to SP:Q52720; match to protein family HMM PF02630; SCO1/SenC family protein complement(3542551..3543291) Hyphomonas neptunium ATCC 15444 4287559 YP_762071.1 CDS HNE_3398 NC_008358.1 3543239 3544606 D identified by similarity to GB:AAF01775.3; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 3543239..3544606 Hyphomonas neptunium ATCC 15444 4289086 YP_762072.1 CDS regA NC_008358.1 3544666 3545238 D identified by match to protein family HMM PF00072; match to protein family HMM TIGR01199; DNA-binding response regulator RegA 3544666..3545238 Hyphomonas neptunium ATCC 15444 4287054 YP_762073.1 CDS HNE_3400 NC_008358.1 3545242 3546183 R identified by match to protein family HMM PF01408; match to protein family HMM PF02153; match to protein family HMM PF03446; match to protein family HMM PF03807; prephenate dehydrogenase complement(3545242..3546183) Hyphomonas neptunium ATCC 15444 4289302 YP_762074.1 CDS HNE_3401 NC_008358.1 3546307 3546696 D hypothetical protein 3546307..3546696 Hyphomonas neptunium ATCC 15444 4289702 YP_762075.1 CDS HNE_3402 NC_008358.1 3546911 3547381 D identified by similarity to GB:AAK22457.1; hypothetical protein 3546911..3547381 Hyphomonas neptunium ATCC 15444 4287921 YP_762076.1 CDS phaR NC_008358.1 3547412 3548002 R identified by match to protein family HMM PF05233; match to protein family HMM PF07879; match to protein family HMM TIGR01848; polyhydroxyalkanoate synthesis repressor PhaR complement(3547412..3548002) Hyphomonas neptunium ATCC 15444 4287803 YP_762077.1 CDS phbB NC_008358.1 3548159 3548884 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM TIGR01829; acetoacetyl-CoA reductase 3548159..3548884 Hyphomonas neptunium ATCC 15444 4289529 YP_762078.1 CDS HNE_3405 NC_008358.1 3548996 3549445 R identified by similarity to GB:AAK22505.1; match to protein family HMM PF06172; hypothetical protein complement(3548996..3549445) Hyphomonas neptunium ATCC 15444 4289857 YP_762079.1 CDS HNE_3406 NC_008358.1 3549445 3550215 R identified by similarity to SP:O24496; match to protein family HMM PF00753; putative hydroxyacylglutathione hydrolase complement(3549445..3550215) Hyphomonas neptunium ATCC 15444 4288675 YP_762080.1 CDS HNE_3407 NC_008358.1 3550272 3551015 D identified by similarity to GB:AAN30876.1; hypothetical protein 3550272..3551015 Hyphomonas neptunium ATCC 15444 4289396 YP_762081.1 CDS HNE_3408 NC_008358.1 3551080 3551424 D identified by match to protein family HMM PF00543; nitrogen regulatory protein P-II 3551080..3551424 Hyphomonas neptunium ATCC 15444 4288517 YP_762082.1 CDS HNE_3409 NC_008358.1 3551484 3552680 R identified by match to protein family HMM PF01551; M23 family peptidase complement(3551484..3552680) Hyphomonas neptunium ATCC 15444 4287658 YP_762083.1 CDS HNE_3410 NC_008358.1 3552680 3553345 R putative lipoprotein complement(3552680..3553345) Hyphomonas neptunium ATCC 15444 4289231 YP_762084.1 CDS HNE_3411 NC_008358.1 3553342 3554001 R hypothetical protein complement(3553342..3554001) Hyphomonas neptunium ATCC 15444 4288336 YP_762085.1 CDS HNE_3412 NC_008358.1 3554003 3556321 R identified by match to protein family HMM PF00082; subtilase family protein complement(3554003..3556321) Hyphomonas neptunium ATCC 15444 4287017 YP_762086.1 CDS HNE_3413 NC_008358.1 3556432 3556887 R identified by similarity to GB:AAK22107.1; match to protein family HMM PF01980; hypothetical protein complement(3556432..3556887) Hyphomonas neptunium ATCC 15444 4289602 YP_762087.1 CDS HNE_3414 NC_008358.1 3557019 3557504 D identified by match to protein family HMM PF00805; pentapeptide repeat-containing protein 3557019..3557504 Hyphomonas neptunium ATCC 15444 4288853 YP_762088.1 CDS HNE_3415 NC_008358.1 3557539 3560412 D identified by similarity to GB:CAA90562.1; match to protein family HMM PF00271; putative helicase 3557539..3560412 Hyphomonas neptunium ATCC 15444 4288828 YP_762089.1 CDS HNE_3416 NC_008358.1 3560426 3560713 D identified by match to protein family HMM PF01479; S4 domain-containing protein 3560426..3560713 Hyphomonas neptunium ATCC 15444 4288953 YP_762090.1 CDS HNE_3417 NC_008358.1 3560710 3561156 D identified by match to protein family HMM PF07049; hypothetical protein 3560710..3561156 Hyphomonas neptunium ATCC 15444 4289481 YP_762091.1 CDS fdxA NC_008358.1 3561255 3561596 D identified by similarity to GB:AAA85787.1; match to protein family HMM PF00037; ferredoxin 3561255..3561596 Hyphomonas neptunium ATCC 15444 4288893 YP_762092.1 CDS HNE_3419 NC_008358.1 3561882 3562406 D identified by match to protein family HMM PF02559; CarD family transcriptional regulator 3561882..3562406 Hyphomonas neptunium ATCC 15444 4289800 YP_762093.1 CDS HNE_3420 NC_008358.1 3562565 3563305 D hypothetical protein 3562565..3563305 Hyphomonas neptunium ATCC 15444 4287960 YP_762094.1 CDS HNE_3421 NC_008358.1 3563395 3563811 D identified by similarity to GB:BAC48320.1; match to protein family HMM PF04828; hypothetical protein 3563395..3563811 Hyphomonas neptunium ATCC 15444 4288465 YP_762095.1 CDS HNE_3422 NC_008358.1 3563928 3564044 R hypothetical protein complement(3563928..3564044) Hyphomonas neptunium ATCC 15444 4289513 YP_762096.1 CDS HNE_3423 NC_008358.1 3564043 3564312 D hypothetical protein 3564043..3564312 Hyphomonas neptunium ATCC 15444 4288955 YP_762097.1 CDS HNE_3424 NC_008358.1 3564320 3565501 R identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase complement(3564320..3565501) Hyphomonas neptunium ATCC 15444 4289367 YP_762098.1 CDS HNE_3425 NC_008358.1 3565595 3566011 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(3565595..3566011) Hyphomonas neptunium ATCC 15444 4288089 YP_762099.1 CDS soxR NC_008358.1 3566093 3566548 D identified by similarity to SP:P22538; match to protein family HMM PF00376; match to protein family HMM TIGR01950; redox-sensitive transcriptional activator SoxR 3566093..3566548 Hyphomonas neptunium ATCC 15444 4288761 YP_762100.1 CDS fcs5 NC_008358.1 3566555 3568123 R identified by similarity to GB:CAC18323.1; match to protein family HMM PF00501; feruloyl-CoA synthetase complement(3566555..3568123) Hyphomonas neptunium ATCC 15444 4288524 YP_762101.1 CDS HNE_3428 NC_008358.1 3568322 3569170 D identified by similarity to GB:AAS43651.1; hypothetical protein 3568322..3569170 Hyphomonas neptunium ATCC 15444 4287503 YP_762102.1 CDS proA NC_008358.1 3569216 3570502 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3569216..3570502 Hyphomonas neptunium ATCC 15444 4288401 YP_762103.1 CDS nadD NC_008358.1 3570499 3571086 D identified by match to protein family HMM PF01467; nicotinate (nicotinamide) nucleotide adenylyltransferase 3570499..3571086 Hyphomonas neptunium ATCC 15444 4290078 YP_762104.1 CDS HNE_3431 NC_008358.1 3571083 3571823 D identified by match to protein family HMM PF00899; match to protein family HMM PF05237; putative molybdopterin biosynthesis protein MoeB 3571083..3571823 Hyphomonas neptunium ATCC 15444 4287047 YP_762105.1 CDS HNE_3432 NC_008358.1 3571899 3572900 D identified by match to protein family HMM PF00561; alpha/beta fold family hydrolase 3571899..3572900 Hyphomonas neptunium ATCC 15444 4288732 YP_762106.1 CDS gyaR NC_008358.1 3572930 3573916 R identified by similarity to SP:Q9C4M5; match to protein family HMM PF00389; match to protein family HMM PF02826; glyoxylate reductase complement(3572930..3573916) Hyphomonas neptunium ATCC 15444 4289850 YP_762107.1 CDS HNE_3434 NC_008358.1 3574054 3574632 D identified by similarity to GB:BAB51997.1; match to protein family HMM PF06347; hypothetical protein 3574054..3574632 Hyphomonas neptunium ATCC 15444 4289493 YP_762108.1 CDS fabZ NC_008358.1 3574690 3575244 D catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 3574690..3575244 Hyphomonas neptunium ATCC 15444 4287928 YP_762109.1 CDS HNE_3436 NC_008358.1 3575314 3576132 D identified by match to protein family HMM PF00106; enoyl-(acyl carrier protein) reductase 3575314..3576132 Hyphomonas neptunium ATCC 15444 4290084 YP_762110.1 CDS HNE_3437 NC_008358.1 3576377 3576634 D identified by similarity to PIR:AI2738; hypothetical protein 3576377..3576634 Hyphomonas neptunium ATCC 15444 4289764 YP_762111.1 CDS HNE_3438 NC_008358.1 3576689 3577138 D identified by similarity to GB:AAQ60449.1; match to protein family HMM PF04828; hypothetical protein 3576689..3577138 Hyphomonas neptunium ATCC 15444 4290268 YP_762112.1 CDS HNE_3439 NC_008358.1 3577889 3578716 R identified by match to protein family HMM PF00188; SCP-like extracellular family protein complement(3577889..3578716) Hyphomonas neptunium ATCC 15444 4288663 YP_762113.1 CDS HNE_3440 NC_008358.1 3578779 3579465 R identified by similarity to SP:O32033; match to protein family HMM PF00485; match to protein family HMM TIGR00235; putative uridine kinase complement(3578779..3579465) Hyphomonas neptunium ATCC 15444 4290362 YP_762114.1 CDS pnpA NC_008358.1 3579558 3581699 R identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; polynucleotide phosphorylase/polyadenylase complement(3579558..3581699) Hyphomonas neptunium ATCC 15444 4288000 YP_762115.1 CDS rpsO NC_008358.1 3581768 3582037 R identified by similarity to SP:P05766; match to protein family HMM PF00312; match to protein family HMM TIGR00952; 30S ribosomal protein S15 complement(3581768..3582037) Hyphomonas neptunium ATCC 15444 4288577 YP_762116.1 CDS HNE_3443 NC_008358.1 3582083 3582202 R hypothetical protein complement(3582083..3582202) Hyphomonas neptunium ATCC 15444 4288418 YP_762117.1 CDS HNE_3444 NC_008358.1 3582333 3582701 D putative lipoprotein 3582333..3582701 Hyphomonas neptunium ATCC 15444 4289139 YP_762118.1 CDS HNE_3445 NC_008358.1 3582725 3583195 D identified by similarity to GB:AAR33584.1; hypothetical protein 3582725..3583195 Hyphomonas neptunium ATCC 15444 4288442 YP_762119.1 CDS HNE_3446 NC_008358.1 3583402 3584340 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISHne3, transposase 3583402..3584340 Hyphomonas neptunium ATCC 15444 4289847 YP_762120.1 CDS mdeA NC_008358.1 3585322 3586614 R identified by similarity to SP:P13254; match to protein family HMM PF01053; methionine gamma-lyase complement(3585322..3586614) Hyphomonas neptunium ATCC 15444 4288959 YP_762121.1 CDS HNE_3449 NC_008358.1 3586724 3587515 D identified by match to protein family HMM PF00565; thermonuclease family protein 3586724..3587515 Hyphomonas neptunium ATCC 15444 4290390 YP_762122.1 CDS HNE_3450 NC_008358.1 3587521 3588408 R identified by similarity to SP:P48194; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; putative alternative sigma factor RpoH complement(3587521..3588408) Hyphomonas neptunium ATCC 15444 4290383 YP_762123.1 CDS HNE_3451 NC_008358.1 3588598 3589083 D identified by similarity to GB:AAK25429.1; match to protein family HMM PF06319; hypothetical protein 3588598..3589083 Hyphomonas neptunium ATCC 15444 4287425 YP_762124.1 CDS HNE_3452 NC_008358.1 3589080 3589526 D hypothetical protein 3589080..3589526 Hyphomonas neptunium ATCC 15444 4288036 YP_762125.1 CDS HNE_3453 NC_008358.1 3589530 3590597 R forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle; citrate synthase 2 complement(3589530..3590597) Hyphomonas neptunium ATCC 15444 4287256 YP_762126.1 CDS HNE_3454 NC_008358.1 3590675 3591805 D identified by match to protein family HMM PF00285; citrate synthase family protein 3590675..3591805 Hyphomonas neptunium ATCC 15444 4288077 YP_762127.1 CDS tkt NC_008358.1 3591807 3593780 R identified by similarity to SP:P27302; match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase complement(3591807..3593780) Hyphomonas neptunium ATCC 15444 4287744 YP_762128.1 CDS HNE_3456 NC_008358.1 3593866 3594180 D identified by similarity to GB:CAE26390.1; hypothetical protein 3593866..3594180 Hyphomonas neptunium ATCC 15444 4289016 YP_762129.1 CDS HNE_3457 NC_008358.1 3594167 3594478 D identified by similarity to GB:BAC46791.1; match to protein family HMM PF05164; hypothetical protein 3594167..3594478 Hyphomonas neptunium ATCC 15444 4287927 YP_762130.1 CDS HNE_3458 NC_008358.1 3594475 3595182 D hypothetical protein 3594475..3595182 Hyphomonas neptunium ATCC 15444 4290473 YP_762131.1 CDS HNE_3459 NC_008358.1 3595196 3595408 D identified by similarity to PIR:C98285; hypothetical protein 3595196..3595408 Hyphomonas neptunium ATCC 15444 4288742 YP_762132.1 CDS HNE_3460 NC_008358.1 3595428 3596000 D identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636; putative ATP:cob(I)alamin adenosyltransferase 3595428..3596000 Hyphomonas neptunium ATCC 15444 4287349 YP_762133.1 CDS HNE_3461 NC_008358.1 3596004 3596966 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(3596004..3596966) Hyphomonas neptunium ATCC 15444 4288370 YP_762134.1 CDS HNE_3462 NC_008358.1 3597034 3599718 R identified by similarity to GB:AAV93653.1; hypothetical protein complement(3597034..3599718) Hyphomonas neptunium ATCC 15444 4288737 YP_762135.1 CDS lysA NC_008358.1 3599697 3600971 R identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase complement(3599697..3600971) Hyphomonas neptunium ATCC 15444 4290189 YP_762136.1 CDS HNE_3464 NC_008358.1 3600984 3601211 R putative lipoprotein complement(3600984..3601211) Hyphomonas neptunium ATCC 15444 4290018 YP_762137.1 CDS argH NC_008358.1 3601452 3602849 R identified by match to protein family HMM PF00206; match to protein family HMM TIGR00838; argininosuccinate lyase complement(3601452..3602849) Hyphomonas neptunium ATCC 15444 4290077 YP_762138.1 CDS HNE_3466 NC_008358.1 3602896 3603486 D identified by similarity to SP:P43221; putative thiol:disulfide interchange protein 3602896..3603486 Hyphomonas neptunium ATCC 15444 4289581 YP_762139.1 CDS HNE_3467 NC_008358.1 3603811 3604293 D hypothetical protein 3603811..3604293 Hyphomonas neptunium ATCC 15444 4288512 YP_762140.1 CDS HNE_3468 NC_008358.1 3604300 3604794 R identified by match to protein family HMM PF00565; putative nuclease complement(3604300..3604794) Hyphomonas neptunium ATCC 15444 4290512 YP_762141.1 CDS HNE_3469 NC_008358.1 3604911 3605789 R converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase complement(3604911..3605789) Hyphomonas neptunium ATCC 15444 4288673 YP_762142.1 CDS etfA NC_008358.1 3605943 3606872 R identified by similarity to SP:P38974; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha complement(3605943..3606872) Hyphomonas neptunium ATCC 15444 4287357 YP_762143.1 CDS eftB NC_008358.1 3606872 3607618 R identified by similarity to SP:P38975; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta complement(3606872..3607618) Hyphomonas neptunium ATCC 15444 4289333 YP_762144.1 CDS HNE_3472 NC_008358.1 3607747 3609000 R identified by match to protein family HMM TIGR01499; putative folylpolyglutamate synthase complement(3607747..3609000) Hyphomonas neptunium ATCC 15444 4290345 YP_762145.1 CDS accD NC_008358.1 3608997 3609977 R acetyl-CoA carboxylase carboxyl transferase subunit beta complement(3608997..3609977) Hyphomonas neptunium ATCC 15444 4289213 YP_762146.1 CDS trpA NC_008358.1 3610008 3610835 R identified by match to protein family HMM PF00290; match to protein family HMM TIGR00262; tryptophan synthase subunit alpha complement(3610008..3610835) Hyphomonas neptunium ATCC 15444 4287825 YP_762147.1 CDS cutA NC_008358.1 3610838 3611158 R identified by similarity to SP:P36654; match to protein family HMM PF03091; divalent-cation tolerance protein CutA complement(3610838..3611158) Hyphomonas neptunium ATCC 15444 4287805 YP_762148.1 CDS trpB NC_008358.1 3611155 3612366 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(3611155..3612366) Hyphomonas neptunium ATCC 15444 4290129 YP_762149.1 CDS trpF NC_008358.1 3612405 3613040 R identified by match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase complement(3612405..3613040) Hyphomonas neptunium ATCC 15444 4287303 YP_762150.1 CDS msrA2 NC_008358.1 3613303 3613953 D identified by similarity to SP:P27110; match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase 3613303..3613953 Hyphomonas neptunium ATCC 15444 4287378 YP_762151.1 CDS HNE_3480 NC_008358.1 3613969 3614958 R hypothetical protein complement(3613969..3614958) Hyphomonas neptunium ATCC 15444 4288990 YP_762152.1 CDS HNE_3481 NC_008358.1 3615111 3615956 D this tRNA synthetase lacks the tRNA anticodon interaction domain; instead this enzyme modifies tRNA(Asp) with glutamate by esterifying glutamate to the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of queosine generating a modified nucleoside at the first anticodon position of tRNAAsp; the modified tRNA does not bind elongation factor Tu; glutamyl-Q tRNA(Asp) synthetase 3615111..3615956 Hyphomonas neptunium ATCC 15444 4288537 YP_762153.1 CDS HNE_3482 NC_008358.1 3615953 3616885 D identified by similarity to PIR:AF3578; match to protein family HMM PF00892; putative transporter 3615953..3616885 Hyphomonas neptunium ATCC 15444 4287077 YP_762154.1 CDS HNE_3483 NC_008358.1 3616953 3618542 D identified by match to protein family HMM PF00245; alkaline phosphatase 3616953..3618542 Hyphomonas neptunium ATCC 15444 4288032 YP_762155.1 CDS HNE_3484 NC_008358.1 3618551 3618991 R hypothetical protein complement(3618551..3618991) Hyphomonas neptunium ATCC 15444 4287795 YP_762156.1 CDS HNE_3485 NC_008358.1 3619094 3619909 D identified by match to protein family HMM PF01381; DNA-binding protein 3619094..3619909 Hyphomonas neptunium ATCC 15444 4290496 YP_762157.1 CDS HNE_3486 NC_008358.1 3619995 3621095 D identified by similarity to GB:AAK24991.1; match to protein family HMM PF00107; class III alcohol dehydrogenase 3619995..3621095 Hyphomonas neptunium ATCC 15444 4288463 YP_762158.1 CDS HNE_3487 NC_008358.1 3621155 3621865 D hypothetical protein 3621155..3621865 Hyphomonas neptunium ATCC 15444 4290107 YP_762159.1 CDS pyrD NC_008358.1 3621862 3622911 R identified by match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate oxidase complement(3621862..3622911) Hyphomonas neptunium ATCC 15444 4289691 YP_762160.1 CDS HNE_3489 NC_008358.1 3622908 3623252 R identified by match to protein family HMM PF06108; hypothetical protein complement(3622908..3623252) Hyphomonas neptunium ATCC 15444 4287951 YP_762161.1 CDS HNE_3490 NC_008358.1 3623297 3625255 R hypothetical protein complement(3623297..3625255) Hyphomonas neptunium ATCC 15444 4288592 YP_762162.1 CDS argG NC_008358.1 3625430 3626671 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 3625430..3626671 Hyphomonas neptunium ATCC 15444 4288392 YP_762163.1 CDS HNE_3492 NC_008358.1 3626752 3627315 R hypothetical protein complement(3626752..3627315) Hyphomonas neptunium ATCC 15444 4287252 YP_762164.1 CDS cobT NC_008358.1 3627686 3629677 R identified by similarity to SP:P29934; match to protein family HMM PF06213; match to protein family HMM TIGR01651; cobaltochelatase subunit CobT complement(3627686..3629677) Hyphomonas neptunium ATCC 15444 4288066 YP_762165.1 CDS cobS NC_008358.1 3629708 3630691 R identified by similarity to SP:P29933; match to protein family HMM TIGR01650; cobaltochelatase subunit CobS complement(3629708..3630691) Hyphomonas neptunium ATCC 15444 4290125 YP_762166.1 CDS HNE_3495 NC_008358.1 3630848 3632131 D hypothetical protein 3630848..3632131 Hyphomonas neptunium ATCC 15444 4287314 YP_762167.1 CDS msrA3 NC_008358.1 3632144 3632761 R identified by similarity to SP:Q93P63; match to protein family HMM PF01625; match to protein family HMM TIGR00401; methionine-S-sulfoxide reductase complement(3632144..3632761) Hyphomonas neptunium ATCC 15444 4290442 YP_762168.1 CDS HNE_3497 NC_008358.1 3632878 3634533 R identified by match to protein family HMM PF07969; putative lipoprotein complement(3632878..3634533) Hyphomonas neptunium ATCC 15444 4290270 YP_762169.1 CDS rpmB NC_008358.1 3634765 3635049 R identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; 50S ribosomal protein complement(3634765..3635049) Hyphomonas neptunium ATCC 15444 4289187 YP_762170.1 CDS HNE_3499 NC_008358.1 3635328 3636221 D identified by similarity to GB:BAB50418.1; hypothetical protein 3635328..3636221 Hyphomonas neptunium ATCC 15444 4289401 YP_762171.1 CDS HNE_3500 NC_008358.1 3636243 3637268 R identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; RluA family pseudouridine synthase complement(3636243..3637268) Hyphomonas neptunium ATCC 15444 4289197 YP_762172.1 CDS phoD2 NC_008358.1 3637362 3639047 D identified by match to protein family HMM PF00245; match to protein family HMM TIGR01409; alkaline phosphatase 3637362..3639047 Hyphomonas neptunium ATCC 15444 4287179 YP_762173.1 CDS HNE_3502 NC_008358.1 3639044 3639802 R oxidoreductase-like protein complement(3639044..3639802) Hyphomonas neptunium ATCC 15444 4288450 YP_762174.1 CDS HNE_3503 NC_008358.1 3639910 3640131 R identified by similarity to GB:AAK25253.1; match to protein family HMM PF04325; hypothetical protein complement(3639910..3640131) Hyphomonas neptunium ATCC 15444 4288284 YP_762175.1 CDS HNE_3504 NC_008358.1 3640179 3640865 R identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(3640179..3640865) Hyphomonas neptunium ATCC 15444 4290221 YP_762176.1 CDS HNE_3505 NC_008358.1 3640875 3641030 R hypothetical protein complement(3640875..3641030) Hyphomonas neptunium ATCC 15444 4289025 YP_762177.1 CDS purE NC_008358.1 3640999 3641493 D identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 3640999..3641493 Hyphomonas neptunium ATCC 15444 4289838 YP_762178.1 CDS purK NC_008358.1 3641490 3642569 D identified by match to protein family HMM PF02222; match to protein family HMM TIGR01161; phosphoribosylaminoimidazole carboxylase ATPase subunit 3641490..3642569 Hyphomonas neptunium ATCC 15444 4287502 YP_762179.1 CDS HNE_3508 NC_008358.1 3642574 3643329 D identified by match to protein family HMM PF02633; creatininase 3642574..3643329 Hyphomonas neptunium ATCC 15444 4287279 YP_762180.1 CDS HNE_3509 NC_008358.1 3643428 3644159 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 3643428..3644159 Hyphomonas neptunium ATCC 15444 4289355 YP_762181.1 CDS HNE_3510 NC_008358.1 3644180 3644914 D identified by similarity to GB:AAU92171.1; putative ABC transporter permease 3644180..3644914 Hyphomonas neptunium ATCC 15444 4290402 YP_762182.1 CDS HNE_3511 NC_008358.1 3644945 3646813 D identified by similarity to PIR:A83188; hypothetical protein 3644945..3646813 Hyphomonas neptunium ATCC 15444 4288684 YP_762183.1 CDS HNE_3512 NC_008358.1 3646810 3647862 D hypothetical protein 3646810..3647862 Hyphomonas neptunium ATCC 15444 4290140 YP_762184.1 CDS HNE_3513 NC_008358.1 3647863 3648510 R identified by similarity to GB:BAB51019.1; hypothetical protein complement(3647863..3648510) Hyphomonas neptunium ATCC 15444 4288236 YP_762185.1 CDS acnA NC_008358.1 3648618 3651380 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3648618..3651380) Hyphomonas neptunium ATCC 15444 4290518 YP_762186.1 CDS ccmA NC_008358.1 3651552 3652133 D identified by similarity to SP:P33931; match to protein family HMM PF00005; match to protein family HMM TIGR01189; heme exporter protein CcmA 3651552..3652133 Hyphomonas neptunium ATCC 15444 4288829 YP_762187.1 CDS ccmB NC_008358.1 3652130 3652795 D identified by match to protein family HMM PF03379; heme exporter protein CcmB 3652130..3652795 Hyphomonas neptunium ATCC 15444 4290024 YP_762188.1 CDS ccmC NC_008358.1 3652819 3653547 D identified by match to protein family HMM PF01578; match to protein family HMM TIGR01191; heme exporter protein CcmC 3652819..3653547 Hyphomonas neptunium ATCC 15444 4288877 YP_762189.1 CDS HNE_3518 NC_008358.1 3653551 3653709 D putative lipoprotein 3653551..3653709 Hyphomonas neptunium ATCC 15444 4288112 YP_762190.1 CDS HNE_3519 NC_008358.1 3653706 3654230 D identified by similarity to SP:P33926; putative thiol:disulfide interchange protein 3653706..3654230 Hyphomonas neptunium ATCC 15444 4290172 YP_762191.1 CDS HNE_3520 NC_008358.1 3654253 3654891 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(3654253..3654891) Hyphomonas neptunium ATCC 15444 4288412 YP_762192.1 CDS HNE_3521 NC_008358.1 3655083 3655598 D identified by match to protein family HMM PF00293; NUDIX family NudH subfamily hydrolase 3655083..3655598 Hyphomonas neptunium ATCC 15444 4288390 YP_762193.1 CDS HNE_3522 NC_008358.1 3655588 3656349 R putative intracellular septation protein A complement(3655588..3656349) Hyphomonas neptunium ATCC 15444 4288602 YP_762194.1 CDS HNE_3523 NC_008358.1 3656429 3657289 R identified by match to protein family HMM PF00892; hypothetical protein complement(3656429..3657289) Hyphomonas neptunium ATCC 15444 4289126 YP_762195.1 CDS HNE_3524 NC_008358.1 3657579 3658442 D identified by similarity to GB:BAB51678.1; hypothetical protein 3657579..3658442 Hyphomonas neptunium ATCC 15444 4288059 YP_762196.1 CDS HNE_3525 NC_008358.1 3658543 3660282 D identified by match to protein family HMM PF07908; match to protein family HMM PF07969; amidohydrolase 3658543..3660282 Hyphomonas neptunium ATCC 15444 4287768 YP_762197.1 CDS ftsY NC_008358.1 3660286 3661530 R identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(3660286..3661530) Hyphomonas neptunium ATCC 15444 4290274 YP_762198.1 CDS HNE_3527 NC_008358.1 3661527 3662804 R identified by match to protein family HMM PF00919; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579; tRNA-i(6)A37 thiotransferase enzyme MiaB complement(3661527..3662804) Hyphomonas neptunium ATCC 15444 4289259 YP_762199.1 CDS HNE_3528 NC_008358.1 3662876 3663334 R hypothetical protein complement(3662876..3663334) Hyphomonas neptunium ATCC 15444 4290161 YP_762200.1 CDS dapF NC_008358.1 3663413 3664222 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3663413..3664222) Hyphomonas neptunium ATCC 15444 4289710 YP_762201.1 CDS HNE_3530 NC_008358.1 3664277 3664693 R hypothetical protein complement(3664277..3664693) Hyphomonas neptunium ATCC 15444 4289295 YP_762202.1 CDS HNE_3531 NC_008358.1 3664725 3665777 R identified by match to protein family HMM PF01575; MaoC domain-containing protein complement(3664725..3665777) Hyphomonas neptunium ATCC 15444 4287806 YP_762203.1 CDS HNE_3532 NC_008358.1 3665825 3666094 R hypothetical protein complement(3665825..3666094) Hyphomonas neptunium ATCC 15444 4289277 YP_762204.1 CDS HNE_3533 NC_008358.1 3666180 3666527 R identified by match to protein family HMM PF03960; putative arsenate reductase complement(3666180..3666527) Hyphomonas neptunium ATCC 15444 4288058 YP_762205.1 CDS citE NC_008358.1 3666591 3667469 R identified by similarity to SP:P77770; match to protein family HMM PF03328; match to protein family HMM TIGR01588; citrate lyase subunit beta complement(3666591..3667469) Hyphomonas neptunium ATCC 15444 4288402 YP_762206.1 CDS HNE_3535 NC_008358.1 3667523 3667999 D identified by match to protein family HMM PF00583; acetyltransferase 3667523..3667999 Hyphomonas neptunium ATCC 15444 4289024 YP_762207.1 CDS HNE_3536 NC_008358.1 3667992 3669125 D identified by similarity to PIR:A44832; match to protein family HMM PF00144; putative esterase 3667992..3669125 Hyphomonas neptunium ATCC 15444 4288360 YP_762208.1 CDS rarD NC_008358.1 3669244 3670155 R identified by similarity to SP:P27844; match to protein family HMM PF00892; match to protein family HMM TIGR00688; chloramphenicol-sensitivity protein (RarD) family protein complement(3669244..3670155) Hyphomonas neptunium ATCC 15444 4289603 YP_762209.1 CDS HNE_3538 NC_008358.1 3670288 3672783 R identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor complement(3670288..3672783) Hyphomonas neptunium ATCC 15444 4290155 YP_762210.1 CDS HNE_3539 NC_008358.1 3673018 3674562 D identified by match to protein family HMM PF00685; sulfotransferase domain-containing protein 3673018..3674562 Hyphomonas neptunium ATCC 15444 4287814 YP_762211.1 CDS HNE_3540 NC_008358.1 3674624 3675640 D identified by match to protein family HMM PF00248; aldo/keto reductase family oxidoreductase 3674624..3675640 Hyphomonas neptunium ATCC 15444 4287115 YP_762212.1 CDS HNE_3541 NC_008358.1 3676640 3679153 R identified by match to protein family HMM PF01580; FtsK/SpoIIIE family protein complement(3676640..3679153) Hyphomonas neptunium ATCC 15444 4287209 YP_762213.1 CDS HNE_3542 NC_008358.1 3679369 3680730 R identified by match to protein family HMM PF00909; ammonium transporter family protein complement(3679369..3680730) Hyphomonas neptunium ATCC 15444 4288130 YP_762214.1 CDS ubiF NC_008358.1 3680977 3682185 D identified by similarity to SP:P75728; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 3680977..3682185 Hyphomonas neptunium ATCC 15444 4288366 YP_762215.1 CDS HNE_3544 NC_008358.1 3682182 3682487 R identified by similarity to GB:CAD85056.1; match to protein family HMM PF06155; hypothetical protein complement(3682182..3682487) Hyphomonas neptunium ATCC 15444 4288470 YP_762216.1 CDS HNE_3545 NC_008358.1 3682484 3682741 R identified by similarity to GB:AAK22095.1; match to protein family HMM PF03966; hypothetical protein complement(3682484..3682741) Hyphomonas neptunium ATCC 15444 4288678 YP_762217.1 CDS HNE_3546 NC_008358.1 3682761 3683405 R identified by match to protein family HMM PF02190; ATP-dependent La family protease complement(3682761..3683405) Hyphomonas neptunium ATCC 15444 4290393 YP_762218.1 CDS HNE_3547 NC_008358.1 3683446 3684333 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; putative thioredoxin complement(3683446..3684333) Hyphomonas neptunium ATCC 15444 4287073 YP_762219.1 CDS HNE_3548 NC_008358.1 3684510 3685172 D identified by match to protein family HMM PF03548; LolA family outer membrane lipoprotein carrier protein 3684510..3685172 Hyphomonas neptunium ATCC 15444 4287419 YP_762220.1 CDS HNE_3549 NC_008358.1 3685413 3686222 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00633; putative exodeoxyribonuclease III 3685413..3686222 Hyphomonas neptunium ATCC 15444 4289975 YP_762221.1 CDS HNE_3550 NC_008358.1 3686223 3686909 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(3686223..3686909) Hyphomonas neptunium ATCC 15444 4289420 YP_762222.1 CDS HNE_3551 NC_008358.1 3687010 3687516 D identified by similarity to GB:AAK25706.1; hypothetical protein 3687010..3687516 Hyphomonas neptunium ATCC 15444 4289044 YP_762223.1 CDS HNE_3552 NC_008358.1 3687513 3688181 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; alanine racemase domain-containing protein complement(3687513..3688181) Hyphomonas neptunium ATCC 15444 4290057 YP_762224.1 CDS HNE_3553 NC_008358.1 3688228 3688824 D identified by match to protein family HMM PF02581; thiamine monophosphate synthase family protein 3688228..3688824 Hyphomonas neptunium ATCC 15444 4287490 YP_762225.1 CDS HNE_3554 NC_008358.1 3688877 3689329 R identified by similarity to GB:AAK25709.1; hypothetical protein complement(3688877..3689329) Hyphomonas neptunium ATCC 15444 4287129 YP_762226.1 CDS HNE_3555 NC_008358.1 3689403 3690638 R hypothetical protein complement(3689403..3690638) Hyphomonas neptunium ATCC 15444 4289561 YP_762227.1 CDS HNE_3556 NC_008358.1 3690713 3691141 D putative lipoprotein 3690713..3691141 Hyphomonas neptunium ATCC 15444 4289814 YP_762228.1 CDS leuS NC_008358.1 3691192 3693759 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3691192..3693759 Hyphomonas neptunium ATCC 15444 4289011 YP_762229.1 CDS HNE_3558 NC_008358.1 3693756 3694229 D identified by similarity to GB:AAK25712.1; putative lipoprotein 3693756..3694229 Hyphomonas neptunium ATCC 15444 4289731 YP_762230.1 CDS holA NC_008358.1 3694229 3695260 D identified by match to protein family HMM TIGR01128; DNA polymerase III subunit delta 3694229..3695260 Hyphomonas neptunium ATCC 15444 4288634 YP_762231.1 CDS parB NC_008358.1 3695268 3696233 R identified by similarity to SP:O05190; match to protein family HMM PF02195; match to protein family HMM TIGR00180; chromosome partitioning protein ParB complement(3695268..3696233) Hyphomonas neptunium ATCC 15444 4287436 YP_762232.1 CDS parA NC_008358.1 3696230 3697036 R identified by similarity to SP:O05189; match to protein family HMM PF01656; chromosome partitioning protein ParA complement(3696230..3697036) Hyphomonas neptunium ATCC 15444 4287861 YP_762233.1 CDS gidB NC_008358.1 3697029 3697652 R identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB complement(3697029..3697652) Hyphomonas neptunium ATCC 15444 4287980 YP_762234.1 CDS gidA NC_008358.1 3697656 3699521 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3697656..3699521) Hyphomonas neptunium ATCC 15444 4288219 YP_762235.1 CDS trmE NC_008358.1 3699586 3700911 R identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE complement(3699586..3700911) Hyphomonas neptunium ATCC 15444 4290265 YP_762236.1 CDS rho NC_008358.1 3700924 3702180 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(3700924..3702180) Hyphomonas neptunium ATCC 15444 4290505 YP_762237.1 CDS HNE_3566 NC_008358.1 3702356 3702799 R identified by match to protein family HMM PF03653; hypothetical protein complement(3702356..3702799) Hyphomonas neptunium ATCC 15444 4289530 YP_762238.1 CDS hemH NC_008358.1 3702813 3703886 R identified by match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase complement(3702813..3703886) Hyphomonas neptunium ATCC 15444 4287560 YP_762239.1 CDS hemE NC_008358.1 3703903 3704937 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(3703903..3704937) Hyphomonas neptunium ATCC 15444 4288726 HNE_0197 tRNA HNE_0197 NC_008358.1 183585 183660 D tRNA-Ala 183585..183660 Hyphomonas neptunium ATCC 15444 4289064 HNE_0224 tRNA HNE_0224 NC_008358.1 217164 217240 R tRNA-Arg complement(217164..217240) Hyphomonas neptunium ATCC 15444 4289066 HNE_0232 tRNA HNE_0232 NC_008358.1 223246 223320 D tRNA-Val 223246..223320 Hyphomonas neptunium ATCC 15444 4289067 HNE_0545 tRNA HNE_0545 NC_008358.1 542000 542076 R tRNA-Met complement(542000..542076) Hyphomonas neptunium ATCC 15444 4289783 HNE_0703 tRNA HNE_0703 NC_008358.1 714902 714976 R tRNA-Val complement(714902..714976) Hyphomonas neptunium ATCC 15444 4289065 HNE_0963 tRNA HNE_0963 NC_008358.1 977472 977557 R tRNA-Leu complement(977472..977557) Hyphomonas neptunium ATCC 15444 4287711 HNE_0978 tRNA HNE_0978 NC_008358.1 993699 993774 D tRNA-Val 993699..993774 Hyphomonas neptunium ATCC 15444 4287722 HNE_1000 tRNA HNE_1000 NC_008358.1 1013000 1013073 R tRNA-Gly complement(1013000..1013073) Hyphomonas neptunium ATCC 15444 4287712 HNE_1022 tRNA HNE_1022 NC_008358.1 1032600 1032676 R tRNA-Met complement(1032600..1032676) Hyphomonas neptunium ATCC 15444 4289777 HNE_1063 tRNA HNE_1063 NC_008358.1 1072135 1072219 D tRNA-Leu 1072135..1072219 Hyphomonas neptunium ATCC 15444 4289775 HNE_1132 tRNA HNE_1132 NC_008358.1 1143571 1143646 D tRNA-Lys 1143571..1143646 Hyphomonas neptunium ATCC 15444 4289780 HNE_1165 tRNA HNE_1165 NC_008358.1 1176429 1176506 R tRNA-Pro complement(1176429..1176506) Hyphomonas neptunium ATCC 15444 4287709 HNE_1341 tRNA HNE_1341 NC_008358.1 1376876 1376950 R tRNA-Thr complement(1376876..1376950) Hyphomonas neptunium ATCC 15444 4287708 HNE_1425 tRNA HNE_1425 NC_008358.1 1458130 1458206 D tRNA-Asp 1458130..1458206 Hyphomonas neptunium ATCC 15444 4289781 HNE_1595 tRNA HNE_1595 NC_008358.1 1627993 1628077 D tRNA-Leu 1627993..1628077 Hyphomonas neptunium ATCC 15444 4287719 HNE_1680 tRNA HNE_1680 NC_008358.1 1726191 1726264 D tRNA-Cys 1726191..1726264 Hyphomonas neptunium ATCC 15444 4289778 HNE_1682 tRNA HNE_1682 NC_008358.1 1726607 1726682 D tRNA-Asn 1726607..1726682 Hyphomonas neptunium ATCC 15444 4287723 HNE_1730 tRNA HNE_1730 NC_008358.1 1773314 1773388 R tRNA-Phe complement(1773314..1773388) Hyphomonas neptunium ATCC 15444 4289071 HNE_1736 tRNA HNE_1736 NC_008358.1 1778392 1778467 D tRNA-Trp 1778392..1778467 Hyphomonas neptunium ATCC 15444 4289070 HNE_1816 tRNA HNE_1816 NC_008358.1 1862948 1863037 D tRNA-Ser 1862948..1863037 Hyphomonas neptunium ATCC 15444 4287718 HNE_1829 tRNA HNE_1829 NC_008358.1 1887504 1887579 R tRNA-Thr complement(1887504..1887579) Hyphomonas neptunium ATCC 15444 4287710 HNE_1967 tRNA HNE_1967 NC_008358.1 2036053 2036127 R tRNA-Glu complement(2036053..2036127) Hyphomonas neptunium ATCC 15444 4289779 HNE_1999 tRNA HNE_1999 NC_008358.1 2075939 2076015 R tRNA-His complement(2075939..2076015) Hyphomonas neptunium ATCC 15444 4289782 HNE_2078 tRNA HNE_2078 NC_008358.1 2152440 2152524 D tRNA-Leu 2152440..2152524 Hyphomonas neptunium ATCC 15444 4287716 HNE_2238 tRNA HNE_2238 NC_008358.1 2341931 2342020 R tRNA-Ser complement(2341931..2342020) Hyphomonas neptunium ATCC 15444 4289060 HNE_2487 tRNA HNE_2487 NC_008358.1 2615670 2615764 R tRNA-Sec complement(2615670..2615764) Hyphomonas neptunium ATCC 15444 4289776 HNE_2557 tRNA HNE_2557 NC_008358.1 2711836 2711925 R tRNA-Ser complement(2711836..2711925) Hyphomonas neptunium ATCC 15444 4287724 HNE_2573 tRNA HNE_2573 NC_008358.1 2727619 2727695 D tRNA-Pro 2727619..2727695 Hyphomonas neptunium ATCC 15444 4289068 HNE_2575 tRNA HNE_2575 NC_008358.1 2728063 2728139 D tRNA-Arg 2728063..2728139 Hyphomonas neptunium ATCC 15444 4287713 HNE_2599 tRNA HNE_2599 NC_008358.1 2762395 2762469 R tRNA-Gly complement(2762395..2762469) Hyphomonas neptunium ATCC 15444 4289773 HNE_2637 tRNA HNE_2637 NC_008358.1 2796971 2797044 R tRNA-Gln complement(2796971..2797044) Hyphomonas neptunium ATCC 15444 4287706 HNE_2654 tRNA HNE_2654 NC_008358.1 2814506 2814582 R tRNA-Met complement(2814506..2814582) Hyphomonas neptunium ATCC 15444 4289069 HNE_2657 tRNA HNE_2657 NC_008358.1 2818014 2818089 R tRNA-Ala complement(2818014..2818089) Hyphomonas neptunium ATCC 15444 4289063 HNE_2658 tRNA HNE_2658 NC_008358.1 2818161 2818237 R tRNA-Ile complement(2818161..2818237) Hyphomonas neptunium ATCC 15444 4287720 HNE_2683 tRNA HNE_2683 NC_008358.1 2844612 2844685 R tRNA-Gly complement(2844612..2844685) Hyphomonas neptunium ATCC 15444 4287714 HNE_2685 tRNA HNE_2685 NC_008358.1 2846059 2846143 R tRNA-Tyr complement(2846059..2846143) Hyphomonas neptunium ATCC 15444 4287715 HNE_2738 tRNA HNE_2738 NC_008358.1 2899602 2899678 D tRNA-Pro 2899602..2899678 Hyphomonas neptunium ATCC 15444 4287721 HNE_3046 tRNA HNE_3046 NC_008358.1 3217479 3217550 D tRNA-Phe 3217479..3217550 Hyphomonas neptunium ATCC 15444 4287707 HNE_3145 tRNA HNE_3145 NC_008358.1 3325490 3325566 R tRNA-Arg complement(3325490..3325566) Hyphomonas neptunium ATCC 15444 4289062 HNE_3222 tRNA HNE_3222 NC_008358.1 3391163 3391246 R tRNA-Leu complement(3391163..3391246) Hyphomonas neptunium ATCC 15444 4289774 HNE_3231 tRNA HNE_3231 NC_008358.1 3400123 3400198 D tRNA-Thr 3400123..3400198 Hyphomonas neptunium ATCC 15444 4287717 HNE_3447 tRNA HNE_3447 NC_008358.1 3585191 3585267 R tRNA-Arg complement(3585191..3585267) Hyphomonas neptunium ATCC 15444 4289059 HNE_3478 tRNA HNE_3478 NC_008358.1 3613097 3613184 R tRNA-Ser complement(3613097..3613184) Hyphomonas neptunium ATCC 15444 4289061 HNE_2655 rRNA rrfA NC_008358.1 2814765 2814883 R 5S ribosomal RNA complement(2814765..2814883) Hyphomonas neptunium ATCC 15444 4289786 HNE_2656 rRNA rrlA NC_008358.1 2814978 2817750 R 23S ribosomal RNA complement(2814978..2817750) Hyphomonas neptunium ATCC 15444 4289785 HNE_2659 rRNA rrsA NC_008358.1 2818559 2819913 R 16S ribosomal RNA complement(2818559..2819913) Hyphomonas neptunium ATCC 15444 4289784