-- dump date 20140619_115451 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 582899000001 SEQ_END SEQ_END NC_014313.1 3638969 3638969 DR NC_014313.1; contig end 3638969..3638969 Hyphomicrobium denitrificans ATCC 51888 YP_003754150.1 CDS Hden_0001 NC_014313.1 62 505 D SMART: rhodanese; KEGG: pla:Plav_0002 rhodanese; rhodanese 62..505 Hyphomicrobium denitrificans ATCC 51888 9389475 YP_003754151.1 CDS Hden_0002 NC_014313.1 621 2141 D TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; KEGG: bbt:BBta_0001 chromosomal replication initiation protein; SMART: replication initiation factor DnaA; ATPase AAA; chromosomal replication initiator protein DnaA 621..2141 Hyphomicrobium denitrificans ATCC 51888 9385876 YP_003754152.1 CDS Hden_0003 NC_014313.1 2480 3598 D SMART: DNA polymerase III beta chain; TIGRFAM: DNA polymerase III subunit beta; KEGG: nwi:Nwi_0002 DNA polymerase III subunit beta; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 2480..3598 Hyphomicrobium denitrificans ATCC 51888 9385877 YP_003754153.1 CDS Hden_0004 NC_014313.1 3702 4091 D KEGG: rpb:RPB_1094 hypothetical protein; manually curated; PFAM: protein of unknown function DUF559; hypothetical protein 3702..4091 Hyphomicrobium denitrificans ATCC 51888 9385878 YP_003754154.1 CDS Hden_0005 NC_014313.1 4094 5461 D PFAM: SMC domain protein; KEGG: mes:Meso_0003 recombination protein F; SMC domain-containing protein 4094..5461 Hyphomicrobium denitrificans ATCC 51888 9385879 YP_003754155.1 CDS Hden_0006 NC_014313.1 5608 8055 D SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA gyrase subunit beta; KEGG: rpe:RPE_0005 DNA gyrase subunit B; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; DNA gyrase subunit beta 5608..8055 Hyphomicrobium denitrificans ATCC 51888 9385880 YP_003754156.1 CDS Hden_0007 NC_014313.1 8122 9012 D manually curated; KEGG: azc:AZC_3917 hypothetical protein; hypothetical protein 8122..9012 Hyphomicrobium denitrificans ATCC 51888 9385881 YP_003754157.1 CDS Hden_0008 NC_014313.1 9060 10850 R PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: mno:Mnod_5461 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(9060..10850) Hyphomicrobium denitrificans ATCC 51888 9385882 YP_003754158.1 CDS Hden_0009 NC_014313.1 11112 13448 D KEGG: pla:Plav_0008 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family 11112..13448 Hyphomicrobium denitrificans ATCC 51888 9385883 YP_003754159.1 CDS Hden_0010 NC_014313.1 13461 14309 R PFAM: protein of unknown function DUF45; KEGG: azc:AZC_4690 hypothetical protein; hypothetical protein complement(13461..14309) Hyphomicrobium denitrificans ATCC 51888 9385884 YP_003754160.1 CDS Hden_0011 NC_014313.1 14419 15027 R PFAM: electron transporter SCO1/SenC; KEGG: pla:Plav_0014 classical-complement-pathway C3/C5 convertase; electron transporter SCO1/SenC complement(14419..15027) Hyphomicrobium denitrificans ATCC 51888 9385885 YP_003754161.1 CDS Hden_0012 NC_014313.1 15162 16565 D KEGG: mlo:mlr5307 two-component, sensor histidine protein kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 15162..16565 Hyphomicrobium denitrificans ATCC 51888 9385886 YP_003754162.1 CDS Hden_0013 NC_014313.1 16722 17288 D KEGG: pla:Plav_0018 two component Fis family transcriptional regulator; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 16722..17288 Hyphomicrobium denitrificans ATCC 51888 9385887 YP_003754163.1 CDS Hden_0014 NC_014313.1 17323 17829 R PFAM: protein of unknown function DUF1052; KEGG: msl:Msil_2157 protein of unknown function DUF1052; hypothetical protein complement(17323..17829) Hyphomicrobium denitrificans ATCC 51888 9385888 YP_003754164.1 CDS Hden_0015 NC_014313.1 17931 19652 D KEGG: ade:Adeh_1447 ATP-dependent protease; ATP-dependent protease-like protein 17931..19652 Hyphomicrobium denitrificans ATCC 51888 9385889 YP_003754165.1 CDS Hden_0016 NC_014313.1 19649 20494 D KEGG: msm:MSMEG_3091 ribose transport ATP-binding protein RbsA; hypothetical protein 19649..20494 Hyphomicrobium denitrificans ATCC 51888 9385890 YP_003754166.1 CDS Hden_0017 NC_014313.1 20499 21464 R PFAM: protein of unknown function DUF344; KEGG: atc:AGR_C_733 hypothetical protein; hypothetical protein complement(20499..21464) Hyphomicrobium denitrificans ATCC 51888 9385891 YP_003754167.1 CDS Hden_0018 NC_014313.1 21651 22205 R PFAM: GcrA cell cycle regulator; KEGG: xau:Xaut_1217 GcrA cell cycle regulator; GcrA cell cycle regulator complement(21651..22205) Hyphomicrobium denitrificans ATCC 51888 9385892 YP_003754168.1 CDS Hden_0019 NC_014313.1 22867 24039 D KEGG: azc:AZC_4028 acetylornithine and succinylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; acetylornithine and succinylornithine aminotransferase 22867..24039 Hyphomicrobium denitrificans ATCC 51888 9385893 YP_003754169.1 CDS Hden_0020 NC_014313.1 24039 24995 D TIGRFAM: ornithine carbamoyltransferase; KEGG: pla:Plav_0403 ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; ornithine carbamoyltransferase 24039..24995 Hyphomicrobium denitrificans ATCC 51888 9385894 YP_003754170.1 CDS Hden_0021 NC_014313.1 25014 25949 D PFAM: Hsp33 protein; KEGG: bbt:BBta_0761 HSP33-like chaperonin; Hsp33 protein 25014..25949 Hyphomicrobium denitrificans ATCC 51888 9385895 YP_003754171.1 CDS Hden_0022 NC_014313.1 25956 26516 R KEGG: cak:Caul_3284 signal transduction protein; signal transduction protein complement(25956..26516) Hyphomicrobium denitrificans ATCC 51888 9385896 YP_003754172.1 CDS Hden_0023 NC_014313.1 26709 27875 R KEGG: bmj:BMULJ_06091 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase ArgE complement(26709..27875) Hyphomicrobium denitrificans ATCC 51888 9385897 YP_003754173.1 CDS Hden_0024 NC_014313.1 27890 28345 R PFAM: ApaG domain protein; KEGG: oan:Oant_0397 ApaG; ApaG domain-containing protein complement(27890..28345) Hyphomicrobium denitrificans ATCC 51888 9385898 YP_003754174.1 CDS Hden_0025 NC_014313.1 28355 29563 R KEGG: azc:AZC_4021 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine sulfhydrylase complement(28355..29563) Hyphomicrobium denitrificans ATCC 51888 9385899 YP_003754175.1 CDS Hden_0026 NC_014313.1 29816 30940 D PFAM: 2-deoxycytidine 5-triphosphate deaminase; KEGG: bra:BRADO6769 2'-deoxycytidine 5'-triphosphate deaminase; 2-deoxycytidine 5-triphosphate deaminase 29816..30940 Hyphomicrobium denitrificans ATCC 51888 9385900 YP_003754176.1 CDS Hden_0027 NC_014313.1 31106 31459 R PFAM: protein of unknown function DUF1428; KEGG: mlo:mlr2642 hypothetical protein; hypothetical protein complement(31106..31459) Hyphomicrobium denitrificans ATCC 51888 9385901 YP_003754177.1 CDS Hden_0029 NC_014313.1 32115 32438 D KEGG: rpt:Rpal_3302 histone family protein DNA-binding protein; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein 32115..32438 Hyphomicrobium denitrificans ATCC 51888 9385903 YP_003754178.1 CDS Hden_0030 NC_014313.1 32565 33737 R KEGG: sme:SMc01096 succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; succinyl-diaminopimelate desuccinylase complement(32565..33737) Hyphomicrobium denitrificans ATCC 51888 9385904 YP_003754179.1 CDS Hden_0031 NC_014313.1 33734 34489 R KEGG: ccs:CCNA_03724 hypothetical protein; hypothetical protein complement(33734..34489) Hyphomicrobium denitrificans ATCC 51888 9385905 YP_003754180.1 CDS Hden_0032 NC_014313.1 34492 35346 R KEGG: mch:Mchl_1853 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(34492..35346) Hyphomicrobium denitrificans ATCC 51888 9385906 YP_003754181.1 CDS Hden_0033 NC_014313.1 35707 35961 D KEGG: glo:Glov_1412 hypothetical protein; hypothetical protein 35707..35961 Hyphomicrobium denitrificans ATCC 51888 9385907 YP_003754182.1 CDS Hden_0034 NC_014313.1 36079 36726 R PFAM: redoxin; KEGG: pla:Plav_1603 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; redoxin complement(36079..36726) Hyphomicrobium denitrificans ATCC 51888 9385908 YP_003754183.1 CDS Hden_0035 NC_014313.1 36764 38173 D KEGG: mno:Mnod_7298 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase 36764..38173 Hyphomicrobium denitrificans ATCC 51888 9385909 YP_003754184.1 CDS Hden_0036 NC_014313.1 38231 38452 D KEGG: bja:bsr1382 hypothetical protein; hypothetical protein 38231..38452 Hyphomicrobium denitrificans ATCC 51888 9385910 YP_003754185.1 CDS Hden_0037 NC_014313.1 38577 39848 D KEGG: mno:Mnod_1682 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 38577..39848 Hyphomicrobium denitrificans ATCC 51888 9385911 YP_003754186.1 CDS Hden_0038 NC_014313.1 40102 40995 R KEGG: met:M446_4081 hypothetical protein; hypothetical protein complement(40102..40995) Hyphomicrobium denitrificans ATCC 51888 9385912 YP_003754187.1 CDS Hden_0039 NC_014313.1 41265 43955 D KEGG: mpo:Mpop_1706 hypothetical protein; hypothetical protein 41265..43955 Hyphomicrobium denitrificans ATCC 51888 9385913 YP_003754188.1 CDS Hden_0040 NC_014313.1 44155 45111 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pla:Plav_1268 LysR family transcriptional regulator; LysR family transcriptional regulator 44155..45111 Hyphomicrobium denitrificans ATCC 51888 9385914 YP_003754189.1 CDS Hden_0041 NC_014313.1 45132 46076 R KEGG: atc:AGR_C_1196 hypothetical protein; hypothetical protein complement(45132..46076) Hyphomicrobium denitrificans ATCC 51888 9385915 YP_003754190.1 CDS Hden_0042 NC_014313.1 46149 47240 R KEGG: cvi:CV_0172 poly (3-hydroxybutyrate) depolymerase; poly (3-hydroxybutyrate) depolymerase complement(46149..47240) Hyphomicrobium denitrificans ATCC 51888 9385916 YP_003754191.1 CDS Hden_0043 NC_014313.1 47319 49424 R KEGG: mno:Mnod_1733 penicillin-binding protein 1C; TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; penicillin-binding protein 1C complement(47319..49424) Hyphomicrobium denitrificans ATCC 51888 9385917 YP_003754192.1 CDS Hden_0044 NC_014313.1 49601 54946 R PFAM: alpha-2-macroglobulin; alpha-2-macroglobulin 2; KEGG: bja:blr4438 hypothetical protein; alpha-2-macroglobulin complement(49601..54946) Hyphomicrobium denitrificans ATCC 51888 9385918 YP_003754193.1 CDS Hden_0045 NC_014313.1 55261 55830 R KEGG: gem:GM21_1811 response regulator receiver modulated metal dependent phosphohydrolase; hypothetical protein complement(55261..55830) Hyphomicrobium denitrificans ATCC 51888 9385919 YP_003754194.1 CDS Hden_0046 NC_014313.1 55988 58411 R KEGG: hba:Hbal_2923 hypothetical protein; hypothetical protein complement(55988..58411) Hyphomicrobium denitrificans ATCC 51888 9385920 YP_003754195.1 CDS Hden_0047 NC_014313.1 58558 61077 R PFAM: glycosyl transferase family 51; KEGG: hth:HTH_0112 penicillin-binding protein; glycosyl transferase family 51 complement(58558..61077) Hyphomicrobium denitrificans ATCC 51888 9385921 YP_003754196.1 CDS Hden_0048 NC_014313.1 61850 65215 R SMART: ATPase AAA; KEGG: scl:sce7121 hypothetical protein; Sigma 54 interacting domain-containing protein complement(61850..65215) Hyphomicrobium denitrificans ATCC 51888 9385922 YP_003754197.1 CDS Hden_0049 NC_014313.1 65234 66397 R KEGG: mxa:MXAN_1592 hypothetical protein; hypothetical protein complement(65234..66397) Hyphomicrobium denitrificans ATCC 51888 9385923 YP_003754198.1 CDS Hden_0050 NC_014313.1 66751 67404 D PFAM: SCP-like extracellular; KEGG: rrs:RoseRS_4591 allergen V5/TPX-1 family protein; SCP-like extracellular 66751..67404 Hyphomicrobium denitrificans ATCC 51888 9385924 YP_003754199.1 CDS Hden_0051 NC_014313.1 67502 68941 R PFAM: polysaccharide biosynthesis protein; KEGG: rpd:RPD_1391 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(67502..68941) Hyphomicrobium denitrificans ATCC 51888 9385925 YP_003754200.1 CDS Hden_0052 NC_014313.1 68962 69195 R KEGG: scb:SCAB_38741 pyridoxal-5'-phosphate dependent aminotransferase; hypothetical protein complement(68962..69195) Hyphomicrobium denitrificans ATCC 51888 9385926 YP_003754201.1 CDS Hden_0053 NC_014313.1 69346 69657 D KEGG: mva:Mvan_1255 hypothetical protein; hypothetical protein 69346..69657 Hyphomicrobium denitrificans ATCC 51888 9385927 YP_003754202.1 CDS Hden_0054 NC_014313.1 69673 70755 R KEGG: rpb:RPB_1345 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; serine-type D-Ala-D-Ala carboxypeptidase complement(69673..70755) Hyphomicrobium denitrificans ATCC 51888 9385928 YP_003754203.1 CDS Hden_0055 NC_014313.1 71092 73083 D KEGG: cwo:Cwoe_3291 drug resistance transporter EmrB/QacA subfamily; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 71092..73083 Hyphomicrobium denitrificans ATCC 51888 9385929 YP_003754204.1 CDS Hden_0056 NC_014313.1 73180 74049 R PFAM: aldo/keto reductase; KEGG: ddr:Deide_07880 oxidoreductase; aldo/keto reductase complement(73180..74049) Hyphomicrobium denitrificans ATCC 51888 9385930 YP_003754205.1 CDS Hden_0057 NC_014313.1 74381 76045 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpe:RPE_1496 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 74381..76045 Hyphomicrobium denitrificans ATCC 51888 9385931 YP_003754206.1 CDS Hden_0058 NC_014313.1 76079 76837 R KEGG: mth:MTH1780 stomatin-like protein; PFAM: band 7 protein; SMART: band 7 protein; band 7 protein complement(76079..76837) Hyphomicrobium denitrificans ATCC 51888 9385932 YP_003754207.1 CDS Hden_0059 NC_014313.1 76902 77660 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ccs:CCNA_01734 MarC family integral membrane protein; multiple antibiotic resistance (MarC)-like protein complement(76902..77660) Hyphomicrobium denitrificans ATCC 51888 9385933 YP_003754208.1 CDS Hden_0060 NC_014313.1 77654 78100 R PFAM: NUDIX hydrolase; KEGG: pla:Plav_2217 NUDIX hydrolase; NUDIX hydrolase complement(77654..78100) Hyphomicrobium denitrificans ATCC 51888 9385934 YP_003754209.1 CDS Hden_0061 NC_014313.1 78103 79281 R PFAM: monooxygenase FAD-binding; KEGG: nha:Nham_2584 monooxygenase, FAD-binding; FAD-binding monooxygenase protein complement(78103..79281) Hyphomicrobium denitrificans ATCC 51888 9385935 YP_003754210.1 CDS Hden_0062 NC_014313.1 79324 79566 R PFAM: protein of unknown function DUF2327; KEGG: rpd:RPD_3291 hypothetical protein; hypothetical protein complement(79324..79566) Hyphomicrobium denitrificans ATCC 51888 9385936 YP_003754211.1 CDS Hden_0063 NC_014313.1 79673 80485 D PFAM: alpha/beta hydrolase fold; KEGG: met:M446_6949 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 79673..80485 Hyphomicrobium denitrificans ATCC 51888 9385937 YP_003754212.1 CDS Hden_0064 NC_014313.1 80975 81661 D PFAM: Extensin family protein; KEGG: xau:Xaut_1728 extensin family protein; Extensin family protein 80975..81661 Hyphomicrobium denitrificans ATCC 51888 9385938 YP_003754213.1 CDS Hden_0065 NC_014313.1 81820 82464 D PFAM: regulatory protein TetR; KEGG: bra:BRADO1168 TetR family transcriptional regulator; TetR family transcriptional regulator 81820..82464 Hyphomicrobium denitrificans ATCC 51888 9385939 YP_003754214.1 CDS Hden_0066 NC_014313.1 82617 83042 D KEGG: xau:Xaut_3071 hypothetical protein; hypothetical protein 82617..83042 Hyphomicrobium denitrificans ATCC 51888 9385940 YP_003754215.1 CDS Hden_0067 NC_014313.1 83119 83520 D KEGG: xau:Xaut_3071 hypothetical protein; hypothetical protein 83119..83520 Hyphomicrobium denitrificans ATCC 51888 9385941 YP_003754216.1 CDS Hden_0068 NC_014313.1 83686 84417 D KEGG: mno:Mnod_4909 protein of unknown function DUF1332; PFAM: protein of unknown function DUF1332; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; hypothetical protein 83686..84417 Hyphomicrobium denitrificans ATCC 51888 9385942 YP_003754217.1 CDS Hden_0069 NC_014313.1 84414 85184 D KEGG: azc:AZC_4549 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; peptidoglycan-binding protein; SMART: N-acetylmuramoyl-L-alanine amidase family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 84414..85184 Hyphomicrobium denitrificans ATCC 51888 9385943 YP_003754218.1 CDS Hden_0070 NC_014313.1 85278 86906 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: lhk:LHK_01973 sulfatase; sulfatase 85278..86906 Hyphomicrobium denitrificans ATCC 51888 9385944 YP_003754219.1 CDS Hden_0071 NC_014313.1 86995 87834 D PFAM: pentapeptide repeat protein; KEGG: gbe:GbCGDNIH1_1873 pentapeptide repeat-containing protein; pentapeptide repeat protein 86995..87834 Hyphomicrobium denitrificans ATCC 51888 9385945 YP_003754220.1 CDS Hden_0072 NC_014313.1 87986 88270 D KEGG: mpo:Mpop_3271 conserved hypothetical protein; exported protein; hypothetical protein 87986..88270 Hyphomicrobium denitrificans ATCC 51888 9385946 YP_003754221.1 CDS Hden_0073 NC_014313.1 88318 88716 R KEGG: pvx:PVX_079910 hypothetical protein; hypothetical protein complement(88318..88716) Hyphomicrobium denitrificans ATCC 51888 9385947 YP_003754222.1 CDS Hden_0074 NC_014313.1 88913 89170 D KEGG: ppp:PHYPADRAFT_85626 hypothetical protein; hypothetical protein 88913..89170 Hyphomicrobium denitrificans ATCC 51888 9385948 YP_003754223.1 CDS Hden_0075 NC_014313.1 89198 89728 R PFAM: protein of unknown function DUF2478; KEGG: oca:OCAR_6130 hypothetical protein; hypothetical protein complement(89198..89728) Hyphomicrobium denitrificans ATCC 51888 9385949 YP_003754224.1 CDS Hden_0076 NC_014313.1 90021 90365 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bmr:BMI_I1785 ferredoxin A; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 90021..90365 Hyphomicrobium denitrificans ATCC 51888 9385950 YP_003754225.1 CDS Hden_0077 NC_014313.1 90444 90722 R KEGG: cvi:CV_1829 sulfate transporter permease protein CysW; hypothetical protein complement(90444..90722) Hyphomicrobium denitrificans ATCC 51888 9385951 YP_003754226.1 CDS Hden_0078 NC_014313.1 91151 92437 D KEGG: azc:AZC_1368 ABC transporter periplasmic substrate-binding protein; ABC transporter periplasmic protein 91151..92437 Hyphomicrobium denitrificans ATCC 51888 9385952 YP_003754227.1 CDS Hden_0079 NC_014313.1 92451 93230 R KEGG: azc:AZC_1369 transcriptional regulatory protein; PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator; GntR family transcriptional regulator complement(92451..93230) Hyphomicrobium denitrificans ATCC 51888 9385953 YP_003754228.1 CDS Hden_0080 NC_014313.1 93266 93958 R KEGG: pau:PA14_26165 hypothetical protein; hypothetical protein complement(93266..93958) Hyphomicrobium denitrificans ATCC 51888 9385954 YP_003754229.1 CDS Hden_0081 NC_014313.1 94325 96106 D PFAM: amino acid permease-associated region; KEGG: azc:AZC_1370 amino acid transporter permease; amino acid permease-associated protein 94325..96106 Hyphomicrobium denitrificans ATCC 51888 9385955 YP_003754230.1 CDS Hden_0082 NC_014313.1 96211 96816 D KEGG: azc:AZC_1371 hypothetical protein; hypothetical protein 96211..96816 Hyphomicrobium denitrificans ATCC 51888 9385956 YP_003754231.1 CDS Hden_0083 NC_014313.1 96813 97772 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD-binding domain protein; KEGG: ara:Arad_8374 ferredoxin protein; ferredoxin 96813..97772 Hyphomicrobium denitrificans ATCC 51888 9385957 YP_003754232.1 CDS Hden_0084 NC_014313.1 97801 98841 D KEGG: ret:RHE_PE00412 hypothetical protein; hypothetical protein 97801..98841 Hyphomicrobium denitrificans ATCC 51888 9385958 YP_003754233.1 CDS Hden_0085 NC_014313.1 98901 100019 D PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: xau:Xaut_3187 glycine cleavage T protein (aminomethyl transferase); glycine cleavage system protein T 98901..100019 Hyphomicrobium denitrificans ATCC 51888 9385959 YP_003754234.1 CDS Hden_0086 NC_014313.1 100274 100705 D PFAM: globin; KEGG: rde:RD1_4240 globin-like protein; globin 100274..100705 Hyphomicrobium denitrificans ATCC 51888 9385960 YP_003754235.1 CDS Hden_0087 NC_014313.1 100821 101360 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bmr:BMI_II478 glyoxalase; glyoxalase/bleomycin resistance protein/dioxygenase complement(100821..101360) Hyphomicrobium denitrificans ATCC 51888 9385961 YP_003754236.1 CDS Hden_0088 NC_014313.1 101443 102228 R PFAM: peptidase M23; KEGG: vpa:VP0548 ToxR-activated protein TagE; peptidase M23 complement(101443..102228) Hyphomicrobium denitrificans ATCC 51888 9385962 YP_003754237.1 CDS Hden_0089 NC_014313.1 102472 103350 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: vei:Veis_2444 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 102472..103350 Hyphomicrobium denitrificans ATCC 51888 9385963 YP_003754238.1 CDS Hden_0090 NC_014313.1 103310 107395 D KEGG: dma:DMR_01570 non-ribosomal peptide synthetase; TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthetase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; transferase hexapeptide repeat containing protein; amino acid adenylation protein 103310..107395 Hyphomicrobium denitrificans ATCC 51888 9385964 YP_003754239.1 CDS Hden_0091 NC_014313.1 107583 109085 D KEGG: oca:OCAR_7002 hypothetical protein; hypothetical protein 107583..109085 Hyphomicrobium denitrificans ATCC 51888 9385965 YP_003754240.1 CDS Hden_0092 NC_014313.1 109211 110206 D KEGG: mes:Meso_0777 UDP-galactose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 109211..110206 Hyphomicrobium denitrificans ATCC 51888 9385966 YP_003754241.1 CDS Hden_0093 NC_014313.1 110261 112264 R PFAM: protein of unknown function DUF839; KEGG: oan:Oant_4449 hypothetical protein; hypothetical protein complement(110261..112264) Hyphomicrobium denitrificans ATCC 51888 9385967 YP_003754242.1 CDS Hden_0094 NC_014313.1 112550 114094 D PFAM: aminoglycoside phosphotransferase; KEGG: mlo:mll6593 hypothetical protein; aminoglycoside phosphotransferase 112550..114094 Hyphomicrobium denitrificans ATCC 51888 9385968 YP_003754243.1 CDS Hden_0095 NC_014313.1 114214 114579 D KEGG: pzu:PHZ_c0640 cold-shock DNA-binding domain protein; cold-shock DNA-binding domain-containing protein 114214..114579 Hyphomicrobium denitrificans ATCC 51888 9385969 YP_003754244.1 CDS Hden_0096 NC_014313.1 114830 115867 D PFAM: alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_1827 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase GroES domain-containing protein 114830..115867 Hyphomicrobium denitrificans ATCC 51888 9385970 YP_003754245.1 CDS Hden_0097 NC_014313.1 115934 116476 D KEGG: tgr:Tgr7_1944 flavin reductase domain protein FMN-binding; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; flavin reductase 115934..116476 Hyphomicrobium denitrificans ATCC 51888 9385971 YP_003754246.1 CDS Hden_0098 NC_014313.1 116721 116948 D KEGG: stp:Strop_0115 chaperone protein DnaJ; hypothetical protein 116721..116948 Hyphomicrobium denitrificans ATCC 51888 9385972 YP_003754247.1 CDS Hden_0099 NC_014313.1 116995 118245 R KEGG: rpe:RPE_3798 PAS/PAC sensor protein; PAS/PAC sensor protein complement(116995..118245) Hyphomicrobium denitrificans ATCC 51888 9385973 YP_003754248.1 CDS Hden_0100 NC_014313.1 118517 119500 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: mpo:Mpop_5160 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(118517..119500) Hyphomicrobium denitrificans ATCC 51888 9385974 YP_003754249.1 CDS Hden_0101 NC_014313.1 119497 120600 R KEGG: pla:Plav_1923 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase complement(119497..120600) Hyphomicrobium denitrificans ATCC 51888 9385975 YP_003754250.1 CDS Hden_0102 NC_014313.1 120800 122503 R KEGG: tgr:Tgr7_2287 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(120800..122503) Hyphomicrobium denitrificans ATCC 51888 9385976 YP_003754251.1 CDS Hden_0103 NC_014313.1 122735 123637 R KEGG: bph:Bphy_5922 methenyltetrahydrofolate cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methenyltetrahydrofolate cyclohydrolase complement(122735..123637) Hyphomicrobium denitrificans ATCC 51888 9385977 YP_003754252.1 CDS Hden_0104 NC_014313.1 123720 125396 R KEGG: rhi:NGR_c23560 formate-tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; formate--tetrahydrofolate ligase complement(123720..125396) Hyphomicrobium denitrificans ATCC 51888 9385978 YP_003754253.1 CDS Hden_0105 NC_014313.1 126339 128273 D PFAM: polysaccharide biosynthesis protein CapD; KEGG: rma:Rmag_0886 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 126339..128273 Hyphomicrobium denitrificans ATCC 51888 9385979 YP_003754254.1 CDS Hden_0106 NC_014313.1 128326 130476 R PFAM: integrase family protein; O-antigen polymerase; KEGG: mch:Mchl_4758 integrase family protein; integrase family protein complement(128326..130476) Hyphomicrobium denitrificans ATCC 51888 9385980 YP_003754255.1 CDS Hden_0107 NC_014313.1 130473 130742 R KEGG: dsh:Dshi_0989 hypothetical protein; hypothetical protein complement(130473..130742) Hyphomicrobium denitrificans ATCC 51888 9385981 YP_003754256.1 CDS Hden_0108 NC_014313.1 130749 130940 R KEGG: vex:VEA_001988 fatty oxidation complex alpha subunit FadB; hypothetical protein complement(130749..130940) Hyphomicrobium denitrificans ATCC 51888 9385982 YP_003754257.1 CDS Hden_0109 NC_014313.1 130990 131499 R KEGG: bgl:bglu_1g21240 P42.1; manually curated; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; Pathogenesis-related transcriptional factor and ERF protein complement(130990..131499) Hyphomicrobium denitrificans ATCC 51888 9385983 YP_003754258.1 CDS Hden_0110 NC_014313.1 131504 131851 R KEGG: aco:Amico_0795 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; hypothetical protein complement(131504..131851) Hyphomicrobium denitrificans ATCC 51888 9385984 YP_003754259.1 CDS Hden_0111 NC_014313.1 131864 132118 R KEGG: cyb:CYB_1946 hypothetical protein; hypothetical protein complement(131864..132118) Hyphomicrobium denitrificans ATCC 51888 9385985 YP_003754260.1 CDS Hden_0112 NC_014313.1 132122 132373 R hypothetical protein complement(132122..132373) Hyphomicrobium denitrificans ATCC 51888 9385986 YP_003754261.1 CDS Hden_0113 NC_014313.1 132370 132606 R KEGG: bfo:BRAFLDRAFT_67299 hypothetical protein; hypothetical protein complement(132370..132606) Hyphomicrobium denitrificans ATCC 51888 9385987 YP_003754262.1 CDS Hden_0114 NC_014313.1 132596 133324 R manually curated; KEGG: pkn:PKH_123140 splicing factor; hypothetical protein complement(132596..133324) Hyphomicrobium denitrificans ATCC 51888 9385988 YP_003754263.1 CDS Hden_0115 NC_014313.1 133321 133581 R KEGG: mdo:100019691 similar to FRAP-related protein; hypothetical protein complement(133321..133581) Hyphomicrobium denitrificans ATCC 51888 9385989 YP_003754264.1 CDS Hden_0116 NC_014313.1 133578 133724 R hypothetical protein complement(133578..133724) Hyphomicrobium denitrificans ATCC 51888 9385990 YP_003754265.1 CDS Hden_0117 NC_014313.1 133724 134074 R KEGG: dmo:Dmoj_GI23121 GI23121 gene product from transcript GI23121-RA; hypothetical protein complement(133724..134074) Hyphomicrobium denitrificans ATCC 51888 9385991 YP_003754266.1 CDS Hden_0118 NC_014313.1 134075 134392 R KEGG: olu:OSTLU_24147 predicted protein; hypothetical protein complement(134075..134392) Hyphomicrobium denitrificans ATCC 51888 9385992 YP_003754267.1 CDS Hden_0119 NC_014313.1 134389 134634 R hypothetical protein complement(134389..134634) Hyphomicrobium denitrificans ATCC 51888 9385993 YP_003754268.1 CDS Hden_0120 NC_014313.1 134628 135062 R KEGG: cre:CHLREDRAFT_167801 hypothetical protein; hypothetical protein complement(134628..135062) Hyphomicrobium denitrificans ATCC 51888 9385994 YP_003754269.1 CDS Hden_0121 NC_014313.1 135459 136214 R KEGG: mth:MTH1028 hypothetical protein; hypothetical protein complement(135459..136214) Hyphomicrobium denitrificans ATCC 51888 9385995 YP_003754270.1 CDS Hden_0122 NC_014313.1 136211 136585 R PFAM: HNH endonuclease; KEGG: sye:Syncc9902_1436 HNH nuclease; HNH endonuclease complement(136211..136585) Hyphomicrobium denitrificans ATCC 51888 9385996 YP_003754271.1 CDS Hden_0123 NC_014313.1 136582 136740 R KEGG: tva:TVAG_348550 Sec23/Sec24 zinc finger family protein; hypothetical protein complement(136582..136740) Hyphomicrobium denitrificans ATCC 51888 9385997 YP_003754272.1 CDS Hden_0124 NC_014313.1 136737 137381 R KEGG: lhk:LHK_01497 exonuclease; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family; phage-type endonuclease complement(136737..137381) Hyphomicrobium denitrificans ATCC 51888 9385998 YP_003754273.1 CDS Hden_0125 NC_014313.1 137378 138094 R PFAM: ERF family protein; KEGG: rpi:Rpic_2344 ERF family protein; ERF family protein complement(137378..138094) Hyphomicrobium denitrificans ATCC 51888 9385999 YP_003754274.1 CDS Hden_0126 NC_014313.1 138091 138261 R hypothetical protein complement(138091..138261) Hyphomicrobium denitrificans ATCC 51888 9386000 YP_003754275.1 CDS Hden_0127 NC_014313.1 138248 138658 R KEGG: sma:SAV_2858 M protein; hypothetical protein complement(138248..138658) Hyphomicrobium denitrificans ATCC 51888 9386001 YP_003754276.1 CDS Hden_0128 NC_014313.1 138868 138984 R hypothetical protein complement(138868..138984) Hyphomicrobium denitrificans ATCC 51888 9386002 YP_003754277.1 CDS Hden_0129 NC_014313.1 138984 139190 R hypothetical protein complement(138984..139190) Hyphomicrobium denitrificans ATCC 51888 9386003 YP_003754278.1 CDS Hden_0130 NC_014313.1 139190 139558 R KEGG: lga:LGAS_1167 trigger factor; hypothetical protein complement(139190..139558) Hyphomicrobium denitrificans ATCC 51888 9386004 YP_003754279.1 CDS Hden_0131 NC_014313.1 139923 140546 D KEGG: bpt:Bpet2666 chloride channel protein-related protein; hypothetical protein 139923..140546 Hyphomicrobium denitrificans ATCC 51888 9386005 YP_003754280.1 CDS Hden_0132 NC_014313.1 140627 140977 R KEGG: ere:EUBREC_0387 hypothetical protein; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein complement(140627..140977) Hyphomicrobium denitrificans ATCC 51888 9386006 YP_003754281.1 CDS Hden_0133 NC_014313.1 141202 141480 R KEGG: mdo:100018023 similar to ATPase, class I, type 8B, member 3; hypothetical protein complement(141202..141480) Hyphomicrobium denitrificans ATCC 51888 9386007 YP_003754282.1 CDS Hden_0134 NC_014313.1 141835 142182 D KEGG: pmu:PM0674 hypothetical protein; hypothetical protein 141835..142182 Hyphomicrobium denitrificans ATCC 51888 9386008 YP_003754283.1 CDS Hden_0135 NC_014313.1 142251 143213 D KEGG: saa:SAUSA300_1957 phiPVL ORF046-like protein; hypothetical protein 142251..143213 Hyphomicrobium denitrificans ATCC 51888 9386009 YP_003754284.1 CDS Hden_0136 NC_014313.1 143200 143649 D KEGG: sro:Sros_7095 hypothetical protein; hypothetical protein 143200..143649 Hyphomicrobium denitrificans ATCC 51888 9386010 YP_003754285.1 CDS Hden_0137 NC_014313.1 143646 143873 D KEGG: mlo:mlr7272 hypothetical protein; hypothetical protein 143646..143873 Hyphomicrobium denitrificans ATCC 51888 9386011 YP_003754286.1 CDS Hden_0138 NC_014313.1 144210 144416 D KEGG: dfe:Dfer_3702 protein of unknown function DUF1549; hypothetical protein 144210..144416 Hyphomicrobium denitrificans ATCC 51888 9386012 YP_003754287.1 CDS Hden_0139 NC_014313.1 144517 144657 D hypothetical protein 144517..144657 Hyphomicrobium denitrificans ATCC 51888 9386013 YP_003754288.1 CDS Hden_0140 NC_014313.1 144654 145004 D KEGG: tmz:Tmz1t_0342 ATPase AAA; hypothetical protein 144654..145004 Hyphomicrobium denitrificans ATCC 51888 9386014 YP_003754289.1 CDS Hden_0141 NC_014313.1 145001 145555 D KEGG: dol:Dole_0697 NusG antitermination factor; hypothetical protein 145001..145555 Hyphomicrobium denitrificans ATCC 51888 9386015 YP_003754290.1 CDS Hden_0142 NC_014313.1 145552 145704 D hypothetical protein 145552..145704 Hyphomicrobium denitrificans ATCC 51888 9386016 YP_003754291.1 CDS Hden_0143 NC_014313.1 145694 145999 D KEGG: bph:Bphy_1887 lambda family phage portal protein; hypothetical protein 145694..145999 Hyphomicrobium denitrificans ATCC 51888 9386017 YP_003754292.1 CDS Hden_0144 NC_014313.1 146027 147064 R KEGG: pat:Patl_2643 KDPG and KHG aldolase; hypothetical protein complement(146027..147064) Hyphomicrobium denitrificans ATCC 51888 9386018 YP_003754293.1 CDS Hden_0145 NC_014313.1 147061 147180 R hypothetical protein complement(147061..147180) Hyphomicrobium denitrificans ATCC 51888 9386019 YP_003754294.1 CDS Hden_0146 NC_014313.1 147382 147591 D KEGG: rru:Rru_A0712 XRE family transcriptional regulator; hypothetical protein 147382..147591 Hyphomicrobium denitrificans ATCC 51888 9386020 YP_003754295.1 CDS Hden_0147 NC_014313.1 147588 148199 D KEGG: nha:Nham_2362 hypothetical protein; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; SMART: HNH nuclease; Pathogenesis-related transcriptional factor and ERF protein 147588..148199 Hyphomicrobium denitrificans ATCC 51888 9386021 YP_003754296.1 CDS Hden_0148 NC_014313.1 148617 149417 D KEGG: ade:Adeh_3620 hypothetical protein; hypothetical protein 148617..149417 Hyphomicrobium denitrificans ATCC 51888 9386022 YP_003754297.1 CDS Hden_0149 NC_014313.1 149453 150613 D KEGG: slt:Slit_1566 plectin; hypothetical protein 149453..150613 Hyphomicrobium denitrificans ATCC 51888 9386023 YP_003754298.1 CDS Hden_0150 NC_014313.1 150610 150777 D KEGG: api:100159509 similar to excision repair cross-complementing rodent repair deficiency, complementation group 4; excision repair cross-complementing rodent repair deficiency, complementation group 4-like protein 150610..150777 Hyphomicrobium denitrificans ATCC 51888 9386024 YP_003754299.1 CDS Hden_0151 NC_014313.1 150777 152507 D KEGG: mma:MM_2295 surface layer protein B; hypothetical protein 150777..152507 Hyphomicrobium denitrificans ATCC 51888 9386025 YP_003754300.1 CDS Hden_0152 NC_014313.1 152511 152702 D hypothetical protein 152511..152702 Hyphomicrobium denitrificans ATCC 51888 9386026 YP_003754301.1 CDS Hden_0153 NC_014313.1 152703 153041 D KEGG: ppa:PAS_chr2-2_0118 hypothetical protein; hypothetical protein 152703..153041 Hyphomicrobium denitrificans ATCC 51888 9386027 YP_003754302.1 CDS Hden_0154 NC_014313.1 153038 153445 D manually curated; KEGG: hap:HAPS_1583 phage small subunit terminase; phage small subunit terminase 153038..153445 Hyphomicrobium denitrificans ATCC 51888 9386028 YP_003754303.1 CDS Hden_0155 NC_014313.1 153417 154919 D PFAM: protein of unknown function DUF264; KEGG: mlo:mll0463 bacteriophage terminase large subunit-like protein; hypothetical protein 153417..154919 Hyphomicrobium denitrificans ATCC 51888 9386029 YP_003754304.1 CDS Hden_0156 NC_014313.1 154904 156955 D KEGG: ctt:CtCNB1_2648 hypothetical protein; hypothetical protein 154904..156955 Hyphomicrobium denitrificans ATCC 51888 9386030 YP_003754305.1 CDS Hden_0157 NC_014313.1 156952 157212 D KEGG: art:Arth_2332 hypothetical protein; hypothetical protein 156952..157212 Hyphomicrobium denitrificans ATCC 51888 9386031 YP_003754306.1 CDS Hden_0158 NC_014313.1 157209 157379 D hypothetical protein 157209..157379 Hyphomicrobium denitrificans ATCC 51888 9386032 YP_003754307.1 CDS Hden_0159 NC_014313.1 157496 158368 D KEGG: mrd:Mrad2831_5694 hypothetical protein; hypothetical protein 157496..158368 Hyphomicrobium denitrificans ATCC 51888 9386033 YP_003754308.1 CDS Hden_0160 NC_014313.1 158425 159537 D KEGG: rlt:Rleg2_1147 hypothetical protein; hypothetical protein 158425..159537 Hyphomicrobium denitrificans ATCC 51888 9386034 YP_003754309.1 CDS Hden_0161 NC_014313.1 159552 160007 D KEGG: yen:YE0694 adhesin; hypothetical protein 159552..160007 Hyphomicrobium denitrificans ATCC 51888 9386035 YP_003754310.1 CDS Hden_0162 NC_014313.1 160058 160273 D KEGG: osa:4336532 hypothetical protein; hypothetical protein 160058..160273 Hyphomicrobium denitrificans ATCC 51888 9386036 YP_003754311.1 CDS Hden_0163 NC_014313.1 160254 160625 D KEGG: mrb:Mrub_0518 type IV secretory pathway VirB4 protein; hypothetical protein 160254..160625 Hyphomicrobium denitrificans ATCC 51888 9386037 YP_003754312.1 CDS Hden_0164 NC_014313.1 160625 162046 D KEGG: rpi:Rpic_2295 hypothetical protein; hypothetical protein 160625..162046 Hyphomicrobium denitrificans ATCC 51888 9386038 YP_003754313.1 CDS Hden_0165 NC_014313.1 162043 162495 D KEGG: ypb:YPTS_3441 outer membrane autotransporter; outer membrane autotransporter 162043..162495 Hyphomicrobium denitrificans ATCC 51888 9386039 YP_003754314.1 CDS Hden_0166 NC_014313.1 162492 163184 D KEGG: pan:PODANSg4525 hypothetical protein; hypothetical protein 162492..163184 Hyphomicrobium denitrificans ATCC 51888 9386040 YP_003754315.1 CDS Hden_0167 NC_014313.1 163216 163821 D KEGG: rcu:RCOM_1968810 DNA transfer protein gp7; hypothetical protein 163216..163821 Hyphomicrobium denitrificans ATCC 51888 9386041 YP_003754316.1 CDS Hden_0168 NC_014313.1 163821 164309 D PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bgl:bglu_1g21240 P42.1; Pathogenesis-related transcriptional factor and ERF protein 163821..164309 Hyphomicrobium denitrificans ATCC 51888 9386042 YP_003754317.1 CDS Hden_0169 NC_014313.1 164309 165490 D KEGG: azc:AZC_0850 hypothetical protein; hypothetical protein 164309..165490 Hyphomicrobium denitrificans ATCC 51888 9386043 YP_003754318.1 CDS Hden_0170 NC_014313.1 165490 167589 D KEGG: mes:Meso_0239 hypothetical protein; hypothetical protein 165490..167589 Hyphomicrobium denitrificans ATCC 51888 9386044 YP_003754319.1 CDS Hden_0172 NC_014313.1 167812 169161 D KEGG: mea:Mex_1p1304 hypothetical protein; hypothetical protein 167812..169161 Hyphomicrobium denitrificans ATCC 51888 9386046 YP_003754320.1 CDS Hden_0173 NC_014313.1 169158 169601 D KEGG: ang:An10g00420 hypothetical protein; hypothetical protein 169158..169601 Hyphomicrobium denitrificans ATCC 51888 9386047 YP_003754321.1 CDS Hden_0174 NC_014313.1 169588 169935 D KEGG: syw:SYNW2350 hypothetical protein; hypothetical protein 169588..169935 Hyphomicrobium denitrificans ATCC 51888 9386048 YP_003754322.1 CDS Hden_0175 NC_014313.1 169932 170729 D KEGG: abc:ACICU_02150 hypothetical protein; hypothetical protein 169932..170729 Hyphomicrobium denitrificans ATCC 51888 9386049 YP_003754323.1 CDS Hden_0176 NC_014313.1 170729 170977 D KEGG: gym:GYMC10_3997 hypothetical protein; hypothetical protein 170729..170977 Hyphomicrobium denitrificans ATCC 51888 9386050 YP_003754324.1 CDS Hden_0177 NC_014313.1 171132 171617 R KEGG: nha:Nham_2362 hypothetical protein; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; SMART: HNH nuclease; Pathogenesis-related transcriptional factor and ERF protein complement(171132..171617) Hyphomicrobium denitrificans ATCC 51888 9386051 YP_003754325.1 CDS Hden_0178 NC_014313.1 171653 172429 D KEGG: nfa:nfa8110 hypothetical protein; hypothetical protein 171653..172429 Hyphomicrobium denitrificans ATCC 51888 9386052 YP_003754326.1 CDS Hden_0179 NC_014313.1 172469 172729 D KEGG: bmj:BMULJ_02960 type IV pilus assembly protein; hypothetical protein 172469..172729 Hyphomicrobium denitrificans ATCC 51888 9386053 YP_003754327.1 CDS Hden_0180 NC_014313.1 172872 173249 R KEGG: xau:Xaut_0830 citrate transporter; hypothetical protein complement(172872..173249) Hyphomicrobium denitrificans ATCC 51888 9386054 YP_003754328.1 CDS Hden_0181 NC_014313.1 173274 174008 D PFAM: glycosyl transferase family 25; KEGG: swd:Swoo_0075 glycosyl transferase; glycosyl transferase family protein 173274..174008 Hyphomicrobium denitrificans ATCC 51888 9386055 YP_003754329.1 CDS Hden_0182 NC_014313.1 174227 175534 D PFAM: polysaccharide biosynthesis protein; KEGG: dda:Dd703_0209 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 174227..175534 Hyphomicrobium denitrificans ATCC 51888 9386056 YP_003754330.1 CDS Hden_0183 NC_014313.1 175531 176742 D PFAM: glycosyl transferase group 1; KEGG: pen:PSEEN1499 glycosyltransferase; group 1 glycosyl transferase 175531..176742 Hyphomicrobium denitrificans ATCC 51888 9386057 YP_003754331.1 CDS Hden_0184 NC_014313.1 176733 178253 D KEGG: eba:ebA5880 hypothetical protein; hypothetical protein 176733..178253 Hyphomicrobium denitrificans ATCC 51888 9386058 YP_003754332.1 CDS Hden_0185 NC_014313.1 178240 179274 D PFAM: polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis domain protein; KEGG: pap:PSPA7_1980 polysaccharide biosynthesis protein; O-antigen biosynthesis protein; polysaccharide biosynthesis protein CapD 178240..179274 Hyphomicrobium denitrificans ATCC 51888 9386059 YP_003754333.1 CDS Hden_0186 NC_014313.1 179276 180361 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: pen:PSEEN1501 nucleoside-diphosphate-sugar epimerase WbjC; NAD-dependent epimerase/dehydratase 179276..180361 Hyphomicrobium denitrificans ATCC 51888 9386060 YP_003754334.1 CDS Hden_0187 NC_014313.1 180345 181484 D TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tmz:Tmz1t_3803 UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 180345..181484 Hyphomicrobium denitrificans ATCC 51888 9386061 YP_003754335.1 CDS Hden_0188 NC_014313.1 181502 182731 D PFAM: glycosyl transferase group 1; KEGG: pph:Ppha_0573 glycosyl transferase group 1; group 1 glycosyl transferase 181502..182731 Hyphomicrobium denitrificans ATCC 51888 9386062 YP_003754336.1 CDS Hden_0189 NC_014313.1 182997 183656 D PFAM: sugar transferase; KEGG: tmz:Tmz1t_1126 undecaprenyl-phosphate galactose phosphotransferase; sugar transferase 182997..183656 Hyphomicrobium denitrificans ATCC 51888 9386063 YP_003754337.1 CDS Hden_0190 NC_014313.1 183653 184276 D TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: avn:Avin_30060 trimeric LpxA-like family protein; sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 183653..184276 Hyphomicrobium denitrificans ATCC 51888 9386064 YP_003754338.1 CDS Hden_0191 NC_014313.1 184284 185459 D KEGG: pph:Ppha_0579 DegT/DnrJ/EryC1/StrS aminotransferase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 184284..185459 Hyphomicrobium denitrificans ATCC 51888 9386065 YP_003754339.1 CDS Hden_0193 NC_014313.1 185798 186685 R PFAM: glycosyl transferase family 2; KEGG: mch:Mchl_0392 glycosyl transferase family 2; family 2 glycosyl transferase complement(185798..186685) Hyphomicrobium denitrificans ATCC 51888 9386067 YP_003754340.1 CDS Hden_0194 NC_014313.1 187268 189478 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bph:Bphy_5960 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 187268..189478 Hyphomicrobium denitrificans ATCC 51888 9386068 YP_003754341.1 CDS Hden_0195 NC_014313.1 189534 189893 D PFAM: protein of unknown function DUF861 cupin_3; KEGG: mlo:mll3593 hypothetical protein; hypothetical protein 189534..189893 Hyphomicrobium denitrificans ATCC 51888 9386069 YP_003754342.1 CDS Hden_0196 NC_014313.1 190127 193324 D PFAM: electron transfer flavoprotein alpha/beta-subunit ; protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bph:Bphy_5959 hypothetical protein; electron transfer flavoprotein alpha/beta-subunit 190127..193324 Hyphomicrobium denitrificans ATCC 51888 9386070 YP_003754343.1 CDS Hden_0197 NC_014313.1 193327 194292 D KEGG: bph:Bphy_5956 electron transfer flavoprotein alpha subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 193327..194292 Hyphomicrobium denitrificans ATCC 51888 9386071 YP_003754344.1 CDS Hden_0198 NC_014313.1 194909 196360 R KEGG: prw:PsycPRwf_0546 hypothetical protein; hypothetical protein complement(194909..196360) Hyphomicrobium denitrificans ATCC 51888 9386072 YP_003754345.1 CDS Hden_0199 NC_014313.1 197203 197760 R PFAM: protein of unknown function DUF204; KEGG: bbt:BBta_7389 hypothetical protein; hypothetical protein complement(197203..197760) Hyphomicrobium denitrificans ATCC 51888 9386074 YP_003754346.1 CDS Hden_0200 NC_014313.1 198168 199211 R KEGG: nve:NEMVE_v1g246414 hypothetical protein; hypothetical protein complement(198168..199211) Hyphomicrobium denitrificans ATCC 51888 9386075 YP_003754347.1 CDS Hden_0201 NC_014313.1 199530 199844 D KEGG: rlt:Rleg2_3869 50S ribosomal protein L21; TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; 50S ribosomal protein L21 199530..199844 Hyphomicrobium denitrificans ATCC 51888 9386076 YP_003754348.1 CDS Hden_0202 NC_014313.1 199875 200147 D KEGG: avi:Avi_4287 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; 50S ribosomal protein L27 199875..200147 Hyphomicrobium denitrificans ATCC 51888 9386077 YP_003754349.1 CDS Hden_0203 NC_014313.1 200260 200781 D PFAM: GCN5-related N-acetyltransferase; KEGG: pla:Plav_1481 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 200260..200781 Hyphomicrobium denitrificans ATCC 51888 9386078 YP_003754350.1 CDS Hden_0204 NC_014313.1 200778 201818 D KEGG: bid:Bind_0415 GTP-binding protein Obg/CgtA; TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP-binding protein Obg/CgtA 200778..201818 Hyphomicrobium denitrificans ATCC 51888 9386079 YP_003754351.1 CDS Hden_0205 NC_014313.1 201903 203000 D PFAM: sodium/calcium exchanger membrane region; KEGG: rpe:RPE_4095 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region 201903..203000 Hyphomicrobium denitrificans ATCC 51888 9386080 YP_003754352.1 CDS Hden_0206 NC_014313.1 203152 204312 D TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; KEGG: azc:AZC_4139 gamma-glutamyl kinase; SMART: PUA domain containing protein; glutamate 5-kinase 203152..204312 Hyphomicrobium denitrificans ATCC 51888 9386081 YP_003754353.1 CDS Hden_0207 NC_014313.1 204315 205601 D KEGG: atc:AGR_C_5042 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 204315..205601 Hyphomicrobium denitrificans ATCC 51888 9386082 YP_003754354.1 CDS Hden_0208 NC_014313.1 205680 206279 D PFAM: cytidylyltransferase; manually curated; KEGG: smd:Smed_3012 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 205680..206279 Hyphomicrobium denitrificans ATCC 51888 9386083 YP_003754355.1 CDS Hden_0209 NC_014313.1 206424 206852 D KEGG: pla:Plav_1476 iojap-like protein; TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; iojap-like protein 206424..206852 Hyphomicrobium denitrificans ATCC 51888 9386084 YP_003754356.1 CDS Hden_0210 NC_014313.1 207016 207498 D PFAM: protein of unknown function DUF163; KEGG: mlo:mll4004 rRNA large subunit methyltransferase; hypothetical protein 207016..207498 Hyphomicrobium denitrificans ATCC 51888 9386085 YP_003754357.1 CDS Hden_0211 NC_014313.1 207505 208041 D KEGG: fjo:Fjoh_4322 G:T/U mismatch-specific DNA glycosylase-like protein; G:T/U mismatch-specific DNA glycosylase-like protein 207505..208041 Hyphomicrobium denitrificans ATCC 51888 9386086 YP_003754358.1 CDS Hden_0212 NC_014313.1 208020 208844 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: alv:Alvin_0717 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(208020..208844) Hyphomicrobium denitrificans ATCC 51888 9386087 YP_003754359.1 CDS Hden_0213 NC_014313.1 208962 209351 R PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: msl:Msil_0590 protein of unknown function DUF306 MetA and HslJ; hypothetical protein complement(208962..209351) Hyphomicrobium denitrificans ATCC 51888 9386088 YP_003754360.1 CDS Hden_0214 NC_014313.1 209390 211069 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pla:Plav_1613 acyl-CoA dehydrogenase domain-containing protein; acyl-CoA dehydrogenase domain-containing protein complement(209390..211069) Hyphomicrobium denitrificans ATCC 51888 9386089 YP_003754361.1 CDS Hden_0215 NC_014313.1 211393 212277 D PFAM: ribonuclease BN; KEGG: azc:AZC_4650 ribonuclease BN; ribonuclease BN 211393..212277 Hyphomicrobium denitrificans ATCC 51888 9386090 YP_003754362.1 CDS Hden_0216 NC_014313.1 212363 213682 R KEGG: rsq:Rsph17025_3009 crotonyl-CoA reductase; TIGRFAM: crotonyl-CoA reductase; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; crotonyl-CoA reductase complement(212363..213682) Hyphomicrobium denitrificans ATCC 51888 9386091 YP_003754363.1 CDS Hden_0217 NC_014313.1 213939 214313 D KEGG: bur:Bcep18194_C7709 hypothetical protein; hypothetical protein 213939..214313 Hyphomicrobium denitrificans ATCC 51888 9386092 YP_003754364.1 CDS Hden_0218 NC_014313.1 214450 216465 D TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: xau:Xaut_1197 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase, large subunit 214450..216465 Hyphomicrobium denitrificans ATCC 51888 9386093 YP_003754365.1 CDS Hden_0219 NC_014313.1 216663 217013 D KEGG: rop:ROP_59940 GTP-binding protein TypA; hypothetical protein 216663..217013 Hyphomicrobium denitrificans ATCC 51888 9386094 YP_003754366.1 CDS Hden_0220 NC_014313.1 217247 218632 R PFAM: O-antigen polymerase; KEGG: azl:AZL_d00270 hypothetical protein; O-antigen polymerase complement(217247..218632) Hyphomicrobium denitrificans ATCC 51888 9386096 YP_003754367.1 CDS Hden_0221 NC_014313.1 218793 219944 R PFAM: glycoside hydrolase; KEGG: mag:amb1842 beta-glucosidase-related glycosidase; glycoside hydrolase complement(218793..219944) Hyphomicrobium denitrificans ATCC 51888 9386097 YP_003754368.1 CDS Hden_0222 NC_014313.1 219994 221070 R PFAM: regulatory protein LysR; KEGG: bja:bll3775 formate dehydrogenase; LysR family transcriptional regulator complement(219994..221070) Hyphomicrobium denitrificans ATCC 51888 9386098 YP_003754369.1 CDS Hden_0223 NC_014313.1 221380 222543 D KEGG: msl:Msil_0927 hypothetical protein; hypothetical protein 221380..222543 Hyphomicrobium denitrificans ATCC 51888 9386099 YP_003754370.1 CDS Hden_0224 NC_014313.1 222616 223863 R KEGG: mrd:Mrad2831_2947 hypothetical protein; hypothetical protein complement(222616..223863) Hyphomicrobium denitrificans ATCC 51888 9386100 YP_003754371.1 CDS Hden_0225 NC_014313.1 224117 225310 R PFAM: Di-haem cytochrome C peroxidase; KEGG: atc:AGR_C_5068 hypothetical protein; Di-heme cytochrome C peroxidase complement(224117..225310) Hyphomicrobium denitrificans ATCC 51888 9386101 YP_003754372.1 CDS Hden_0226 NC_014313.1 225307 225852 R KEGG: rpt:Rpal_1625 hypothetical protein; hypothetical protein complement(225307..225852) Hyphomicrobium denitrificans ATCC 51888 9386102 YP_003754373.1 CDS Hden_0227 NC_014313.1 225872 228130 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bid:Bind_2970 TonB-dependent receptor; TonB-dependent receptor complement(225872..228130) Hyphomicrobium denitrificans ATCC 51888 9386103 YP_003754374.1 CDS Hden_0228 NC_014313.1 228634 229065 D KEGG: mrd:Mrad2831_4479 CrcB protein; TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein 228634..229065 Hyphomicrobium denitrificans ATCC 51888 9386104 YP_003754375.1 CDS Hden_0229 NC_014313.1 229068 230060 R KEGG: msl:Msil_3037 methyltransferase; TIGRFAM: methyltransferase; PFAM: protein of unknown function DUF2260; methyltransferase complement(229068..230060) Hyphomicrobium denitrificans ATCC 51888 9386105 YP_003754376.1 CDS Hden_0230 NC_014313.1 230060 231361 R PFAM: protein of unknown function DUF323; KEGG: msl:Msil_3038 protein of unknown function DUF323; hypothetical protein complement(230060..231361) Hyphomicrobium denitrificans ATCC 51888 9386106 YP_003754377.1 CDS Hden_0231 NC_014313.1 231671 232033 R PFAM: protein of unknown function DUF427; KEGG: bbt:BBta_5398 hypothetical protein; hypothetical protein complement(231671..232033) Hyphomicrobium denitrificans ATCC 51888 9386107 YP_003754378.1 CDS Hden_0232 NC_014313.1 232709 233656 D KEGG: pla:Plav_1262 alpha/beta hydrolase fold; manually curated; PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 232709..233656 Hyphomicrobium denitrificans ATCC 51888 9386109 YP_003754379.1 CDS Hden_0233 NC_014313.1 233634 234509 R PFAM: protein of unknown function DUF2189, transmembrane; KEGG: rhi:NGR_c15150 hypothetical protein; hypothetical protein complement(233634..234509) Hyphomicrobium denitrificans ATCC 51888 9386110 YP_003754380.1 CDS Hden_0234 NC_014313.1 235038 235529 D PFAM: MraZ domain; KEGG: bid:Bind_0683 hypothetical protein; MraZ domain-containing protein 235038..235529 Hyphomicrobium denitrificans ATCC 51888 9386111 YP_003754381.1 CDS Hden_0235 NC_014313.1 235526 236563 D KEGG: azc:AZC_4546 methyltransferase; TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 235526..236563 Hyphomicrobium denitrificans ATCC 51888 9386112 YP_003754382.1 CDS Hden_0236 NC_014313.1 236604 236900 D KEGG: mch:Mchl_5103 hypothetical protein; hypothetical protein 236604..236900 Hyphomicrobium denitrificans ATCC 51888 9386113 YP_003754383.1 CDS Hden_0237 NC_014313.1 236890 238566 D KEGG: nha:Nham_1273 peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; peptidoglycan glycosyltransferase 236890..238566 Hyphomicrobium denitrificans ATCC 51888 9386114 YP_003754384.1 CDS Hden_0238 NC_014313.1 238684 240129 D KEGG: mrd:Mrad2831_2362 UDP-N-acetylmuramyl-tripeptide synthetase; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; UDP-N-acetylmuramyl-tripeptide synthetase 238684..240129 Hyphomicrobium denitrificans ATCC 51888 9386115 YP_003754385.1 CDS Hden_0239 NC_014313.1 240134 241537 D KEGG: met:M446_0259 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 240134..241537 Hyphomicrobium denitrificans ATCC 51888 9386116 YP_003754386.1 CDS Hden_0240 NC_014313.1 241582 242664 D KEGG: azc:AZC_4541 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase, family 4, conserved region; phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 241582..242664 Hyphomicrobium denitrificans ATCC 51888 9386117 YP_003754387.1 CDS Hden_0241 NC_014313.1 242806 244221 D KEGG: mch:Mchl_5098 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; UDP-N-acetylmuramoylalanine/D-glutamate ligase 242806..244221 Hyphomicrobium denitrificans ATCC 51888 9386118 YP_003754388.1 CDS Hden_0242 NC_014313.1 244218 245399 D PFAM: cell cycle protein; KEGG: xau:Xaut_1190 cell division protein FtsW; cell cycle protein 244218..245399 Hyphomicrobium denitrificans ATCC 51888 9386119 YP_003754389.1 CDS Hden_0243 NC_014313.1 245410 246537 D KEGG: azc:AZC_4555 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 245410..246537 Hyphomicrobium denitrificans ATCC 51888 9386120 YP_003754390.1 CDS Hden_0244 NC_014313.1 246597 248033 D KEGG: mno:Mnod_7442 UDP-N-acetylmuramate/alanine ligase; TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; UDP-N-acetylmuramate/alanine ligase 246597..248033 Hyphomicrobium denitrificans ATCC 51888 9386121 YP_003754391.1 CDS Hden_0245 NC_014313.1 248033 249013 D TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: azc:AZC_4560 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase; UDP-N-acetylenolpyruvoylglucosamine reductase 248033..249013 Hyphomicrobium denitrificans ATCC 51888 9386122 YP_003754392.1 CDS Hden_0246 NC_014313.1 249041 249994 D TIGRFAM: D-alanine/D-alanine ligase; KEGG: mno:Mnod_7439 D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine/D-alanine ligase 249041..249994 Hyphomicrobium denitrificans ATCC 51888 9386123 YP_003754393.1 CDS Hden_0247 NC_014313.1 249982 250986 D PFAM: polypeptide-transport-associated domain protein FtsQ-type; cell division protein FtsQ; KEGG: mlo:mll1550 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein FtsQ-type 249982..250986 Hyphomicrobium denitrificans ATCC 51888 9386124 YP_003754394.1 CDS Hden_0248 NC_014313.1 250997 252253 D TIGRFAM: cell division protein FtsA; PFAM: cell division protein FtsA; KEGG: xau:Xaut_0327 cell division protein FtsA; SMART: cell division protein FtsA; cell division protein FtsA 250997..252253 Hyphomicrobium denitrificans ATCC 51888 9386125 YP_003754395.1 CDS Hden_0249 NC_014313.1 252323 253942 D TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: rlt:Rleg2_2586 cell division protein FtsZ; SMART: Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 252323..253942 Hyphomicrobium denitrificans ATCC 51888 9386126 YP_003754396.1 CDS Hden_0250 NC_014313.1 254211 255155 D KEGG: met:M446_6696 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 254211..255155 Hyphomicrobium denitrificans ATCC 51888 9386127 YP_003754397.1 CDS Hden_0251 NC_014313.1 255288 256217 D TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: mlo:mll1543 hypothetical protein; outer membrane assembly lipoprotein YfiO 255288..256217 Hyphomicrobium denitrificans ATCC 51888 9386128 YP_003754398.1 CDS Hden_0252 NC_014313.1 256309 258447 D TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein; NAD-dependent DNA ligase OB-fold; KEGG: xau:Xaut_1762 DNA ligase, NAD-dependent; SMART: NAD-dependent DNA ligase ; Helix-hairpin-helix DNA-binding class 1; BRCT domain protein; DNA ligase, NAD-dependent 256309..258447 Hyphomicrobium denitrificans ATCC 51888 9386129 YP_003754399.1 CDS Hden_0253 NC_014313.1 258474 260285 R PFAM: peptidase M24; creatinase; KEGG: pla:Plav_2434 peptidase M24; peptidase M24 complement(258474..260285) Hyphomicrobium denitrificans ATCC 51888 9386130 YP_003754400.1 CDS Hden_0254 NC_014313.1 260329 261204 R PFAM: ribosomal L11 methyltransferase; KEGG: pde:Pden_0622 ribosomal L11 methyltransferase; ribosomal L11 methyltransferase complement(260329..261204) Hyphomicrobium denitrificans ATCC 51888 9386131 YP_003754401.1 CDS Hden_0255 NC_014313.1 261210 262673 R KEGG: psl:Psta_4598 hypothetical protein; hypothetical protein complement(261210..262673) Hyphomicrobium denitrificans ATCC 51888 9386132 YP_003754402.1 CDS Hden_0256 NC_014313.1 262984 264252 D KEGG: ava:Ava_2736 heat shock protein DnaJ-like; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 262984..264252 Hyphomicrobium denitrificans ATCC 51888 9386133 YP_003754403.1 CDS Hden_0257 NC_014313.1 264384 264581 R hypothetical protein complement(264384..264581) Hyphomicrobium denitrificans ATCC 51888 9386134 YP_003754404.1 CDS Hden_0258 NC_014313.1 264847 267303 R PFAM: UvrD/REP helicase; KEGG: azc:AZC_4475 DNA helicase II; UvrD/REP helicase complement(264847..267303) Hyphomicrobium denitrificans ATCC 51888 9386135 YP_003754405.1 CDS Hden_0259 NC_014313.1 267541 271548 D PFAM: AsmA family protein; KEGG: mlo:mll1482 hypothetical protein; AsmA family protein 267541..271548 Hyphomicrobium denitrificans ATCC 51888 9386136 YP_003754406.1 CDS Hden_0260 NC_014313.1 271563 271793 R KEGG: nha:Nham_2735 arylsulfate sulfotransferase-related protein; arylsulfate sulfotransferase-like protein complement(271563..271793) Hyphomicrobium denitrificans ATCC 51888 9386137 YP_003754407.1 CDS Hden_0261 NC_014313.1 271793 272008 R KEGG: sjp:SJA_C1-31150 hypothetical protein; hypothetical protein complement(271793..272008) Hyphomicrobium denitrificans ATCC 51888 9386138 YP_003754408.1 CDS Hden_0262 NC_014313.1 272120 273511 R KEGG: pla:Plav_2445 fumarate hydratase; TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; fumarate hydratase, class II complement(272120..273511) Hyphomicrobium denitrificans ATCC 51888 9386139 YP_003754409.1 CDS Hden_0263 NC_014313.1 273646 273972 R KEGG: afw:Anae109_0406 DEAD/DEAH box helicase domain-containing protein; hypothetical protein complement(273646..273972) Hyphomicrobium denitrificans ATCC 51888 9386140 YP_003754410.1 CDS Hden_0264 NC_014313.1 274446 275912 D PFAM: protein of unknown function DUF1254; protein of unknown function DUF1214; KEGG: rec:RHECIAT_CH0002049 hypothetical protein; hypothetical protein 274446..275912 Hyphomicrobium denitrificans ATCC 51888 9386141 YP_003754411.1 CDS Hden_0265 NC_014313.1 276112 276813 D PFAM: methyltransferase type 12; KEGG: swi:Swit_2164 methyltransferase type 12; type 12 methyltransferase 276112..276813 Hyphomicrobium denitrificans ATCC 51888 9386142 YP_003754412.1 CDS Hden_0266 NC_014313.1 276876 277535 R PFAM: protein of unknown function DUF1321; KEGG: xau:Xaut_1418 hypothetical protein; hypothetical protein complement(276876..277535) Hyphomicrobium denitrificans ATCC 51888 9386143 YP_003754413.1 CDS Hden_0267 NC_014313.1 278114 278899 D PFAM: hypothetical protein; KEGG: amr:AM1_2826 CAAX amino terminal protease family protein; hypothetical protein 278114..278899 Hyphomicrobium denitrificans ATCC 51888 9386144 YP_003754414.1 CDS Hden_0268 NC_014313.1 278950 279744 D TIGRFAM: thymidylate synthase; KEGG: pla:Plav_2448 thymidylate synthase; PFAM: thymidylate synthase; thymidylate synthase 278950..279744 Hyphomicrobium denitrificans ATCC 51888 9386145 YP_003754415.1 CDS Hden_0269 NC_014313.1 279794 280162 R manually curated; KEGG: mes:Meso_1247 hypothetical protein; hypothetical protein complement(279794..280162) Hyphomicrobium denitrificans ATCC 51888 9386146 YP_003754416.1 CDS Hden_0270 NC_014313.1 280403 280915 D KEGG: oan:Oant_1793 dihydrofolate reductase; PFAM: dihydrofolate reductase region; dihydrofolate reductase 280403..280915 Hyphomicrobium denitrificans ATCC 51888 9386147 YP_003754417.1 CDS Hden_0271 NC_014313.1 281172 282344 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: bja:bll6509 membrane bound protease protein; SMART: band 7 protein; HflK protein 281172..282344 Hyphomicrobium denitrificans ATCC 51888 9386148 YP_003754418.1 CDS Hden_0272 NC_014313.1 282346 283257 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: azc:AZC_2570 HflC protein precursor; SMART: band 7 protein; HflC protein 282346..283257 Hyphomicrobium denitrificans ATCC 51888 9386149 YP_003754419.1 CDS Hden_0273 NC_014313.1 283254 283439 D PFAM: protein of unknown function DUF2065; KEGG: pla:Plav_2460 hypothetical protein; hypothetical protein 283254..283439 Hyphomicrobium denitrificans ATCC 51888 9386150 YP_003754420.1 CDS Hden_0274 NC_014313.1 283571 285034 D SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: azc:AZC_2572 serine protease DO-like protein; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 283571..285034 Hyphomicrobium denitrificans ATCC 51888 9386151 YP_003754421.1 CDS Hden_0275 NC_014313.1 285078 285791 D TIGRFAM: phosphatidylserine decarboxylase related protein; KEGG: rpe:RPE_2008 phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase-like protein 285078..285791 Hyphomicrobium denitrificans ATCC 51888 9386152 YP_003754422.1 CDS Hden_0276 NC_014313.1 285888 286835 D KEGG: rpe:RPE_2009 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 285888..286835 Hyphomicrobium denitrificans ATCC 51888 9386153 YP_003754423.1 CDS Hden_0277 NC_014313.1 286842 288287 R TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase (GDP); PFAM: nucleotidyl transferase; mannose-6-phosphate isomerase type II; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(286842..288287) Hyphomicrobium denitrificans ATCC 51888 9386154 YP_003754424.1 CDS Hden_0278 NC_014313.1 288425 290434 R PFAM: protein of unknown function DUF87; KEGG: pla:Plav_1359 hypothetical protein; hypothetical protein complement(288425..290434) Hyphomicrobium denitrificans ATCC 51888 9386155 YP_003754425.1 CDS Hden_0279 NC_014313.1 290457 291341 R KEGG: pla:Plav_1358 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase complement(290457..291341) Hyphomicrobium denitrificans ATCC 51888 9386156 YP_003754426.1 CDS Hden_0280 NC_014313.1 291538 292260 R TIGRFAM: TonB family protein; KEGG: nhl:Nhal_1797 TonB family protein; TonB family protein complement(291538..292260) Hyphomicrobium denitrificans ATCC 51888 9386157 YP_003754427.1 CDS Hden_0281 NC_014313.1 292280 292732 R PFAM: biopolymertransporter ExbD/TolR; KEGG: rru:Rru_A2154 biopolymer transporter ExbD/TolR; biopolymertransporter ExbD/TolR complement(292280..292732) Hyphomicrobium denitrificans ATCC 51888 9386158 YP_003754428.1 CDS Hden_0282 NC_014313.1 292732 293415 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mno:Mnod_1395 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(292732..293415) Hyphomicrobium denitrificans ATCC 51888 9386159 YP_003754429.1 CDS Hden_0283 NC_014313.1 293419 293958 R KEGG: mex:Mext_1619 hypothetical protein; hypothetical protein complement(293419..293958) Hyphomicrobium denitrificans ATCC 51888 9386160 YP_003754430.1 CDS Hden_0284 NC_014313.1 294188 295879 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: pla:Plav_1906 non-specific protein-tyrosine kinase; lipopolysaccharide biosynthesis protein complement(294188..295879) Hyphomicrobium denitrificans ATCC 51888 9386161 YP_003754431.1 CDS Hden_0285 NC_014313.1 296005 296379 R KEGG: dre:796666 hypothetical protein LOC796666; hypothetical protein complement(296005..296379) Hyphomicrobium denitrificans ATCC 51888 9386162 YP_003754432.1 CDS Hden_0286 NC_014313.1 296575 297543 D KEGG: pla:Plav_2807 glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; glycerate dehydrogenase 296575..297543 Hyphomicrobium denitrificans ATCC 51888 9386163 YP_003754433.1 CDS Hden_0287 NC_014313.1 297568 297675 D hypothetical protein 297568..297675 Hyphomicrobium denitrificans ATCC 51888 9386164 YP_003754434.1 CDS Hden_0288 NC_014313.1 297910 298200 R KEGG: rpa:RPA3811 excinuclease ABC subunit C; PFAM: excinuclease ABC C subunit domain protein; SMART: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain-containing protein complement(297910..298200) Hyphomicrobium denitrificans ATCC 51888 9386165 YP_003754435.1 CDS Hden_0289 NC_014313.1 298245 299585 R PFAM: amidase; KEGG: mes:Meso_0343 amidase; amidase complement(298245..299585) Hyphomicrobium denitrificans ATCC 51888 9386166 YP_003754436.1 CDS Hden_0290 NC_014313.1 299831 301033 D PFAM: aminotransferase class V; KEGG: bpt:Bpet4350 serine-glyoxylate aminotransferase-related; class V aminotransferase 299831..301033 Hyphomicrobium denitrificans ATCC 51888 9386167 YP_003754437.1 CDS Hden_0291 NC_014313.1 301074 301400 R KEGG: mes:Meso_1752 hypothetical protein; hypothetical protein complement(301074..301400) Hyphomicrobium denitrificans ATCC 51888 9386168 YP_003754438.1 CDS Hden_0292 NC_014313.1 301517 301906 R KEGG: xau:Xaut_1526 hypothetical protein; hypothetical protein complement(301517..301906) Hyphomicrobium denitrificans ATCC 51888 9386169 YP_003754439.1 CDS Hden_0293 NC_014313.1 302079 302738 R PFAM: protein of unknown function DUF1007; KEGG: rpe:RPE_4805 hypothetical protein; hypothetical protein complement(302079..302738) Hyphomicrobium denitrificans ATCC 51888 9386170 YP_003754440.1 CDS Hden_0294 NC_014313.1 302845 303909 D PFAM: periplasmic solute binding protein; KEGG: rec:RHECIAT_CH0002848 zinc uptake ABC transporter substrate-binding protein; periplasmic solute binding protein 302845..303909 Hyphomicrobium denitrificans ATCC 51888 9386171 YP_003754441.1 CDS Hden_0295 NC_014313.1 303975 304679 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xau:Xaut_0202 two component transcriptional regulator; SMART: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator PhoB, winged helix family complement(303975..304679) Hyphomicrobium denitrificans ATCC 51888 9386172 YP_003754442.1 CDS Hden_0296 NC_014313.1 304704 305417 R KEGG: mno:Mnod_7424 phosphate uptake regulator, PhoU; TIGRFAM: phosphate transporter regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU complement(304704..305417) Hyphomicrobium denitrificans ATCC 51888 9386173 YP_003754443.1 CDS Hden_0297 NC_014313.1 305459 306247 R TIGRFAM: phosphate ABC transporter ATPase; PFAM: ABC transporter; KEGG: bid:Bind_3411 phosphate ABC transporter ATPase subunit; SMART: ATPase AAA; phosphate ABC transporter ATPase complement(305459..306247) Hyphomicrobium denitrificans ATCC 51888 9386174 YP_003754444.1 CDS Hden_0298 NC_014313.1 306244 307095 R KEGG: mlo:mll3720 phosphate transporter permease protein PstA; TIGRFAM: phosphate ABC transporter inner membrane subunit PstA; PFAM: binding-protein-dependent transporters inner membrane component; phosphate ABC transporter inner membrane subunit PstA complement(306244..307095) Hyphomicrobium denitrificans ATCC 51888 9386175 YP_003754445.1 CDS Hden_0299 NC_014313.1 307097 308089 R KEGG: msl:Msil_0838 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: phosphate ABC transporter inner membrane subunit PstC; PFAM: binding-protein-dependent transporters inner membrane component; phosphate ABC transporter inner membrane subunit PstC complement(307097..308089) Hyphomicrobium denitrificans ATCC 51888 9386176 YP_003754446.1 CDS Hden_0300 NC_014313.1 308169 309212 R KEGG: azl:AZL_e02450 phosphate transporter substrate-binding protein; TIGRFAM: phosphate ABC transporter periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; phosphate ABC transporter periplasmic phosphate-binding protein complement(308169..309212) Hyphomicrobium denitrificans ATCC 51888 9386177 YP_003754447.1 CDS Hden_0301 NC_014313.1 309559 310845 R KEGG: met:M446_1659 histidine kinase; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase complement(309559..310845) Hyphomicrobium denitrificans ATCC 51888 9386178 YP_003754448.1 CDS Hden_0302 NC_014313.1 310863 311360 R KEGG: bcm:Bcenmc03_1872 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator complement(310863..311360) Hyphomicrobium denitrificans ATCC 51888 9386179 YP_003754449.1 CDS Hden_0303 NC_014313.1 311602 312885 D PFAM: peptidase M75, Imelysin; KEGG: azc:AZC_2744 uncharacterized iron-regulated protein; peptidase M75, Imelysin 311602..312885 Hyphomicrobium denitrificans ATCC 51888 9386180 YP_003754450.1 CDS Hden_0304 NC_014313.1 312968 314395 D PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: azl:AZL_c02540 multicopper oxidase type 3; multicopper oxidase type 3 312968..314395 Hyphomicrobium denitrificans ATCC 51888 9386181 YP_003754451.1 CDS Hden_0305 NC_014313.1 314392 315573 D PFAM: protein of unknown function DUF1111; KEGG: azc:AZC_2746 thiol oxidoreductase; hypothetical protein 314392..315573 Hyphomicrobium denitrificans ATCC 51888 9386182 YP_003754452.1 CDS Hden_0306 NC_014313.1 315570 316637 D PFAM: peptidase M75, Imelysin; KEGG: bpt:Bpet3463 hypothetical protein; peptidase M75, Imelysin 315570..316637 Hyphomicrobium denitrificans ATCC 51888 9386183 YP_003754453.1 CDS Hden_0307 NC_014313.1 316618 317730 D PFAM: conserved hypothetical protein; KEGG: bpe:BP1558 hypothetical protein; hypothetical protein 316618..317730 Hyphomicrobium denitrificans ATCC 51888 9386184 YP_003754454.1 CDS Hden_0308 NC_014313.1 317824 319209 D TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: protein of unknown function UPF0004 ; radical SAM protein; KEGG: rce:RC1_0705 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 317824..319209 Hyphomicrobium denitrificans ATCC 51888 9386185 YP_003754455.1 CDS Hden_0309 NC_014313.1 319206 320228 R KEGG: mno:Mnod_2658 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter complement(319206..320228) Hyphomicrobium denitrificans ATCC 51888 9386186 YP_003754456.1 CDS Hden_0310 NC_014313.1 320337 321287 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: alv:Alvin_0692 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 320337..321287 Hyphomicrobium denitrificans ATCC 51888 9386187 YP_003754457.1 CDS Hden_0311 NC_014313.1 321256 321864 R PFAM: regulatory protein TetR; KEGG: vex:VEA_004024 transcriptional regulator; TetR family transcriptional regulator complement(321256..321864) Hyphomicrobium denitrificans ATCC 51888 9386188 YP_003754458.1 CDS Hden_0312 NC_014313.1 322106 322738 R KEGG: pla:Plav_0225 TadE family protein; hypothetical protein complement(322106..322738) Hyphomicrobium denitrificans ATCC 51888 9386189 YP_003754459.1 CDS Hden_0313 NC_014313.1 322743 323363 R PFAM: TadE family protein; KEGG: bja:blr3942 hypothetical protein; TadE family protein complement(322743..323363) Hyphomicrobium denitrificans ATCC 51888 9386190 YP_003754460.1 CDS Hden_0314 NC_014313.1 323534 324046 R KEGG: bja:blr1444 hypothetical protein; hypothetical protein complement(323534..324046) Hyphomicrobium denitrificans ATCC 51888 9386191 YP_003754461.1 CDS Hden_0315 NC_014313.1 324599 324778 D PFAM: Flp/Fap pilin component; KEGG: nwi:Nwi_0304 Flp/Fap pilin component; Flp/Fap pilin component 324599..324778 Hyphomicrobium denitrificans ATCC 51888 9386192 YP_003754462.1 CDS Hden_0316 NC_014313.1 324871 325047 D PFAM: Flp/Fap pilin component; KEGG: las:CLIBASIA_03100 hypothetical protein; Flp/Fap pilin component 324871..325047 Hyphomicrobium denitrificans ATCC 51888 9386193 YP_003754463.1 CDS Hden_0317 NC_014313.1 325142 325651 D PFAM: peptidase A24A prepilin type IV; KEGG: oca:OCAR_7418 peptidase A24A, prepilin type IV; peptidase A24A prepilin type IV 325142..325651 Hyphomicrobium denitrificans ATCC 51888 9386194 YP_003754464.1 CDS Hden_0318 NC_014313.1 325812 326615 D TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: rpd:RPD_3519 Flp pilus assembly CpaB; SMART: SAF domain protein; Flp pilus assembly protein CpaB 325812..326615 Hyphomicrobium denitrificans ATCC 51888 9386195 YP_003754465.1 CDS Hden_0319 NC_014313.1 326654 328306 D PFAM: type II and III secretion system protein; transport-associated; KEGG: pla:Plav_0233 type II and III secretion system protein; type II and III secretion system protein 326654..328306 Hyphomicrobium denitrificans ATCC 51888 9386196 YP_003754466.1 CDS Hden_0320 NC_014313.1 328326 329063 D KEGG: pla:Plav_0234 pilus biogenesis lipoprotein CpaD; TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; PFAM: pilus biogenesis CpaD-related; pilus (Caulobacter type) biogenesis lipoprotein CpaD 328326..329063 Hyphomicrobium denitrificans ATCC 51888 9386197 YP_003754467.1 CDS Hden_0321 NC_014313.1 329076 330380 D KEGG: pla:Plav_0235 response regulator receiver protein; response regulator receiver protein 329076..330380 Hyphomicrobium denitrificans ATCC 51888 9386198 YP_003754468.1 CDS Hden_0322 NC_014313.1 330390 331874 D PFAM: type II secretion system protein E; KEGG: mno:Mnod_2830 type II secretion system protein E; type II secretion system protein E 330390..331874 Hyphomicrobium denitrificans ATCC 51888 9386199 YP_003754469.1 CDS Hden_0323 NC_014313.1 331858 332856 D PFAM: type II secretion system F domain; KEGG: pla:Plav_0237 type II secretion system protein; type II secretion system protein F 331858..332856 Hyphomicrobium denitrificans ATCC 51888 9386200 YP_003754470.1 CDS Hden_0324 NC_014313.1 332896 333876 D PFAM: type II secretion system F domain; KEGG: pla:Plav_0238 type II secretion system protein; type II secretion system protein F 332896..333876 Hyphomicrobium denitrificans ATCC 51888 9386201 YP_003754471.1 CDS Hden_0325 NC_014313.1 334006 334989 R PFAM: hypothetical protein; KEGG: rpe:RPE_3757 hypothetical protein; hypothetical protein complement(334006..334989) Hyphomicrobium denitrificans ATCC 51888 9386202 YP_003754472.1 CDS Hden_0326 NC_014313.1 335189 336610 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: mex:Mext_2976 leucyl aminopeptidase; peptidase M17 leucyl aminopeptidase domain-containing protein 335189..336610 Hyphomicrobium denitrificans ATCC 51888 9386203 YP_003754473.1 CDS Hden_0327 NC_014313.1 336607 337500 D PFAM: NLP/P60 protein; KEGG: mno:Mnod_1116 NLP/P60 protein; NLP/P60 protein 336607..337500 Hyphomicrobium denitrificans ATCC 51888 9386204 YP_003754474.1 CDS Hden_0328 NC_014313.1 337497 337961 R KEGG: mag:amb1098 hypothetical protein; hypothetical protein complement(337497..337961) Hyphomicrobium denitrificans ATCC 51888 9386205 YP_003754475.1 CDS Hden_0329 NC_014313.1 338143 339195 D PFAM: alpha/beta hydrolase fold; KEGG: gau:GAU_3415 hypothetical protein; alpha/beta hydrolase fold protein 338143..339195 Hyphomicrobium denitrificans ATCC 51888 9386206 YP_003754476.1 CDS Hden_0330 NC_014313.1 339316 340185 D PFAM: glutathione S-transferase domain; KEGG: azo:azo3542 glutathione transferase; glutathione S-transferase 339316..340185 Hyphomicrobium denitrificans ATCC 51888 9386207 YP_003754477.1 CDS Hden_0331 NC_014313.1 340215 341321 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain protein; helix-turn-helix- domain containing protein AraC type; KEGG: sus:acid_4009 DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator complement(340215..341321) Hyphomicrobium denitrificans ATCC 51888 9386208 YP_003754478.1 CDS Hden_0332 NC_014313.1 341776 342219 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2084 YeeE/YedE family protein; hypothetical protein 341776..342219 Hyphomicrobium denitrificans ATCC 51888 9386209 YP_003754479.1 CDS Hden_0333 NC_014313.1 342216 342635 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: azc:AZC_2083 YeeE/YedE family protein; hypothetical protein 342216..342635 Hyphomicrobium denitrificans ATCC 51888 9386210 YP_003754480.1 CDS Hden_0334 NC_014313.1 342686 343264 R KEGG: dsh:Dshi_4226 hypothetical protein; hypothetical protein complement(342686..343264) Hyphomicrobium denitrificans ATCC 51888 9386211 YP_003754481.1 CDS Hden_0335 NC_014313.1 343281 344306 R KEGG: YVTN beta-propeller repeat family protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; SMART: WD-40 repeat protein; 40-residue YVTN family beta-propeller repeat protein complement(343281..344306) Hyphomicrobium denitrificans ATCC 51888 9386212 YP_003754482.1 CDS Hden_0336 NC_014313.1 344572 345003 D KEGG: mrd:Mrad2831_2411 cytochrome C550; cytochrome C550 344572..345003 Hyphomicrobium denitrificans ATCC 51888 9386213 YP_003754483.1 CDS Hden_0337 NC_014313.1 345013 345903 D PFAM: extracellular solute-binding protein family 3; KEGG: azl:AZL_a05230 extracellular solute-binding protein; family 3 extracellular solute-binding protein 345013..345903 Hyphomicrobium denitrificans ATCC 51888 9386214 YP_003754484.1 CDS Hden_0338 NC_014313.1 345962 346750 D KEGG: tmz:Tmz1t_2818 hypothetical protein; hypothetical protein 345962..346750 Hyphomicrobium denitrificans ATCC 51888 9386215 YP_003754485.1 CDS Hden_0339 NC_014313.1 346747 347715 D SMART: beta-lactamase; KEGG: swi:Swit_0686 beta-lactamase domain-containing protein; beta-lactamase 346747..347715 Hyphomicrobium denitrificans ATCC 51888 9386216 YP_003754486.1 CDS Hden_0340 NC_014313.1 347886 349649 D TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: mch:Mchl_1540 PQQ-dependent dehydrogenase, methanol/ethanol family; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 347886..349649 Hyphomicrobium denitrificans ATCC 51888 9386217 YP_003754487.1 CDS Hden_0341 NC_014313.1 349772 350653 D PFAM: protein of unknown function DUF1194; KEGG: mrd:Mrad2831_3936 hypothetical protein; hypothetical protein 349772..350653 Hyphomicrobium denitrificans ATCC 51888 9386218 YP_003754488.1 CDS Hden_0342 NC_014313.1 350770 351270 D KEGG: xop:PXO_00366 general stress protein; general stress protein 350770..351270 Hyphomicrobium denitrificans ATCC 51888 9386219 YP_003754489.1 CDS Hden_0343 NC_014313.1 351267 351458 D KEGG: xcv:XCV1419 hypothetical protein; hypothetical protein 351267..351458 Hyphomicrobium denitrificans ATCC 51888 9386220 YP_003754490.1 CDS Hden_0344 NC_014313.1 351460 352869 R PFAM: uracil-DNA glycosylase superfamily; KEGG: mrd:Mrad2831_3539 uracil-DNA glycosylase superfamily protein; uracil-DNA glycosylase superfamily protein complement(351460..352869) Hyphomicrobium denitrificans ATCC 51888 9386221 YP_003754491.1 CDS Hden_0345 NC_014313.1 352871 354073 R SMART: Elongator protein 3/MiaB/NifB; KEGG: mch:Mchl_2580 radical SAM domain-containing protein; Elongator protein 3/MiaB/NifB complement(352871..354073) Hyphomicrobium denitrificans ATCC 51888 9386222 YP_003754492.1 CDS Hden_0346 NC_014313.1 354241 355008 R PFAM: protein of unknown function DUF347; KEGG: npu:Npun_R6200 hypothetical protein; hypothetical protein complement(354241..355008) Hyphomicrobium denitrificans ATCC 51888 9386223 YP_003754493.1 CDS Hden_0347 NC_014313.1 355102 355533 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: atc:AGR_L_3039 hypothetical protein; hypothetical protein 355102..355533 Hyphomicrobium denitrificans ATCC 51888 9386224 YP_003754494.1 CDS Hden_0348 NC_014313.1 355948 356403 R KEGG: tcr:504839.70 hypothetical protein; hypothetical protein complement(355948..356403) Hyphomicrobium denitrificans ATCC 51888 9386225 YP_003754495.1 CDS Hden_0349 NC_014313.1 356715 357392 D KEGG: rle:RL1157 two-component response regulator transcriptional regulatory protein; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 356715..357392 Hyphomicrobium denitrificans ATCC 51888 9386226 YP_003754496.1 CDS Hden_0350 NC_014313.1 357379 358776 D KEGG: rlt:Rleg2_0703 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 357379..358776 Hyphomicrobium denitrificans ATCC 51888 9386227 YP_003754497.1 CDS Hden_0351 NC_014313.1 359014 360027 D KEGG: sus:acid_5802 hypothetical protein; hypothetical protein 359014..360027 Hyphomicrobium denitrificans ATCC 51888 9386228 YP_003754498.1 CDS Hden_0352 NC_014313.1 360178 362136 R KEGG: ccs:CCNA_01546 DEAD-box RNA helicase-like protein; PFAM: DEAD/DEAH box helicase; helicase; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase complement(360178..362136) Hyphomicrobium denitrificans ATCC 51888 9386229 YP_003754499.1 CDS Hden_0355 NC_014313.1 363939 364706 R KEGG: rsq:Rsph17025_4362 hypothetical protein; hypothetical protein complement(363939..364706) Hyphomicrobium denitrificans ATCC 51888 9386232 YP_003754500.1 CDS Hden_0356 NC_014313.1 364710 367583 R KEGG: rsq:Rsph17025_4361 N-6 DNA methylase; N-6 DNA methylase complement(364710..367583) Hyphomicrobium denitrificans ATCC 51888 9386233 YP_003754501.1 CDS Hden_0357 NC_014313.1 367647 367838 R KEGG: mag:amb3266 hypothetical protein; hypothetical protein complement(367647..367838) Hyphomicrobium denitrificans ATCC 51888 9386234 YP_003754502.1 CDS Hden_0359 NC_014313.1 369153 369464 R KEGG: rle:pRL90162 cobalamin synthesis protein; hypothetical protein complement(369153..369464) Hyphomicrobium denitrificans ATCC 51888 9386237 YP_003754503.1 CDS Hden_0360 NC_014313.1 369708 372695 D SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; DNA-binding protein; 3'-5' exonuclease; Helix-hairpin-helix domain protein class 2; TIGRFAM: DNA polymerase I; KEGG: pla:Plav_0105 DNA polymerase I; PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; DNA polymerase I 369708..372695 Hyphomicrobium denitrificans ATCC 51888 9386238 YP_003754504.1 CDS Hden_0361 NC_014313.1 372766 374148 R KEGG: oca:OCAR_4132 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; polyhydroxyalkanoate depolymerase, intracellular complement(372766..374148) Hyphomicrobium denitrificans ATCC 51888 9386239 YP_003754505.1 CDS Hden_0362 NC_014313.1 374462 375754 D KEGG: afw:Anae109_0029 major facilitator transporter; major facilitator transporter 374462..375754 Hyphomicrobium denitrificans ATCC 51888 9386240 YP_003754506.1 CDS Hden_0363 NC_014313.1 375781 376077 R KEGG: bja:bsl1446 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; translation initiation factor IF-1 complement(375781..376077) Hyphomicrobium denitrificans ATCC 51888 9386241 YP_003754507.1 CDS Hden_0364 NC_014313.1 376191 376397 R KEGG: rru:Rru_A1521 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(376191..376397) Hyphomicrobium denitrificans ATCC 51888 9386242 YP_003754508.1 CDS Hden_0365 NC_014313.1 376692 377135 R PFAM: peptidase M15A; KEGG: apa:APP7_0124 hypothetical protein; peptidase M15A complement(376692..377135) Hyphomicrobium denitrificans ATCC 51888 9386243 YP_003754509.1 CDS Hden_0366 NC_014313.1 377538 377993 D KEGG: abo:ABO_1669 hypothetical protein; hypothetical protein 377538..377993 Hyphomicrobium denitrificans ATCC 51888 9386244 YP_003754510.1 CDS Hden_0367 NC_014313.1 378126 378383 D KEGG: ctp:CTRG_04016 similar to potential protein kinase; hypothetical protein 378126..378383 Hyphomicrobium denitrificans ATCC 51888 9386245 YP_003754511.1 CDS Hden_0368 NC_014313.1 378476 378748 D KEGG: mpo:Mpop_1814 hypothetical protein; hypothetical protein 378476..378748 Hyphomicrobium denitrificans ATCC 51888 9386246 YP_003754512.1 CDS Hden_0369 NC_014313.1 378809 379153 R KEGG: dmo:Dmoj_GI13885 GI13885 gene product from transcript GI13885-RA; hypothetical protein complement(378809..379153) Hyphomicrobium denitrificans ATCC 51888 9386247 YP_003754513.1 CDS Hden_0370 NC_014313.1 379469 379636 D KEGG: pap:PSPA7_5558 Sel1; hypothetical protein 379469..379636 Hyphomicrobium denitrificans ATCC 51888 9386248 YP_003754514.1 CDS Hden_0371 NC_014313.1 379679 381481 R TIGRFAM: GTP-binding protein LepA; small GTP-binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: pla:Plav_0223 GTP-binding protein LepA; SMART: elongation factor G domain protein; GTP-binding protein LepA complement(379679..381481) Hyphomicrobium denitrificans ATCC 51888 9386249 YP_003754515.1 CDS Hden_0372 NC_014313.1 381658 382209 D KEGG: syx:SynWH7803_1731 signal recognition particle protein; hypothetical protein 381658..382209 Hyphomicrobium denitrificans ATCC 51888 9386250 YP_003754516.1 CDS Hden_0373 NC_014313.1 382406 383362 D PFAM: protein of unknown function DUF125 transmembrane; rubrerythrin; KEGG: azl:AZL_013670 hypothetical protein; hypothetical protein 382406..383362 Hyphomicrobium denitrificans ATCC 51888 9386251 YP_003754517.1 CDS Hden_0374 NC_014313.1 383487 384725 D KEGG: bbt:BBta_2243 hypothetical protein; TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; lytic murein transglycosylase 383487..384725 Hyphomicrobium denitrificans ATCC 51888 9386252 YP_003754518.1 CDS Hden_0375 NC_014313.1 384792 386138 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: met:M446_4539 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(384792..386138) Hyphomicrobium denitrificans ATCC 51888 9386253 YP_003754519.1 CDS Hden_0376 NC_014313.1 386172 388604 R TIGRFAM: phenylalanyl-tRNA synthetase subunit beta; KEGG: pla:Plav_0221 phenylalanyl-tRNA synthetase subunit beta; phenylalanyl-tRNA synthetase subunit beta complement(386172..388604) Hyphomicrobium denitrificans ATCC 51888 9386254 YP_003754520.1 CDS Hden_0377 NC_014313.1 388777 389844 R KEGG: oca:OCAR_4439 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, subunit alpha; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; phenylalanyl-tRNA synthetase subunit alpha complement(388777..389844) Hyphomicrobium denitrificans ATCC 51888 9386255 YP_003754521.1 CDS Hden_0378 NC_014313.1 390004 390405 R KEGG: mno:Mnod_5553 ribosomal protein L20; TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; 50S ribosomal protein L20 complement(390004..390405) Hyphomicrobium denitrificans ATCC 51888 9386256 YP_003754522.1 CDS Hden_0379 NC_014313.1 390507 390707 R KEGG: dsh:Dshi_0230 50S ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; 50S ribosomal protein L35 complement(390507..390707) Hyphomicrobium denitrificans ATCC 51888 9386257 YP_003754523.1 CDS Hden_0380 NC_014313.1 391198 391545 D KEGG: gwc:GWCH70_2402 ABC transporter; hypothetical protein 391198..391545 Hyphomicrobium denitrificans ATCC 51888 9386258 YP_003754524.1 CDS Hden_0381 NC_014313.1 391574 391984 R PFAM: GtrA family protein; KEGG: sal:Sala_2862 GtrA-like protein; GtrA family protein complement(391574..391984) Hyphomicrobium denitrificans ATCC 51888 9386259 YP_003754525.1 CDS Hden_0382 NC_014313.1 392241 392441 D KEGG: clu:CLUG_04191 hypothetical protein; hypothetical protein 392241..392441 Hyphomicrobium denitrificans ATCC 51888 9386260 YP_003754526.1 CDS Hden_0383 NC_014313.1 392550 392807 D KEGG: ami:Amir_3335 cellulase; cellulase 392550..392807 Hyphomicrobium denitrificans ATCC 51888 9386261 YP_003754527.1 CDS Hden_0384 NC_014313.1 392968 393342 R KEGG: amr:AM1_2994 cyclic nucleotide-binding protein, PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator complement(392968..393342) Hyphomicrobium denitrificans ATCC 51888 9386262 YP_003754528.1 CDS Hden_0385 NC_014313.1 393474 394004 R KEGG: xau:Xaut_1937 translation initiation factor IF-3; TIGRFAM: translation initiation factor IF-3; PFAM: translation initiation factor 3-like; translation initiation factor IF-3 complement(393474..394004) Hyphomicrobium denitrificans ATCC 51888 9386263 YP_003754529.1 CDS Hden_0386 NC_014313.1 394227 395306 D PFAM: protein of unknown function DUF1022; KEGG: tmz:Tmz1t_3771 protein of unknown function DUF1022; hypothetical protein 394227..395306 Hyphomicrobium denitrificans ATCC 51888 9386264 YP_003754530.1 CDS Hden_0387 NC_014313.1 395348 396160 R KEGG: rpt:Rpal_3214 hypothetical protein; hypothetical protein complement(395348..396160) Hyphomicrobium denitrificans ATCC 51888 9386265 YP_003754531.1 CDS Hden_0388 NC_014313.1 396357 397568 R PFAM: glycosyl transferase group 1; KEGG: mrd:Mrad2831_3159 glycosyl transferase group 1; group 1 glycosyl transferase complement(396357..397568) Hyphomicrobium denitrificans ATCC 51888 9386266 YP_003754532.1 CDS Hden_0389 NC_014313.1 397604 398389 D KEGG: nha:Nham_0078 hypothetical protein; hypothetical protein 397604..398389 Hyphomicrobium denitrificans ATCC 51888 9386267 YP_003754533.1 CDS Hden_0390 NC_014313.1 398401 399435 R KEGG: twh:TWT151 hypothetical protein; hypothetical protein complement(398401..399435) Hyphomicrobium denitrificans ATCC 51888 9386268 YP_003754534.1 CDS Hden_0391 NC_014313.1 399483 400346 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: alv:Alvin_1682 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(399483..400346) Hyphomicrobium denitrificans ATCC 51888 9386269 YP_003754535.1 CDS Hden_0392 NC_014313.1 400343 401494 R PFAM: hypothetical protein; KEGG: pla:Plav_0200 hypothetical protein; hypothetical protein complement(400343..401494) Hyphomicrobium denitrificans ATCC 51888 9386270 YP_003754536.1 CDS Hden_0393 NC_014313.1 401522 402226 R PFAM: glutathione S-transferase domain; KEGG: mrd:Mrad2831_3133 glutathione S-transferase domain-containing protein; glutathione S-transferase complement(401522..402226) Hyphomicrobium denitrificans ATCC 51888 9386271 YP_003754537.1 CDS Hden_0394 NC_014313.1 402367 403164 D KEGG: oan:Oant_1339 undecaprenyl pyrophosphate phosphatase; TIGRFAM: undecaprenol kinase; PFAM: bacitracin resistance protein BacA; undecaprenol kinase 402367..403164 Hyphomicrobium denitrificans ATCC 51888 9386272 YP_003754538.1 CDS Hden_0395 NC_014313.1 403228 403692 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: xau:Xaut_2034 PTS IIA-like nitrogen-regulatory protein PtsN; PTS IIA-like nitrogen-regulatory protein PtsN complement(403228..403692) Hyphomicrobium denitrificans ATCC 51888 9386273 YP_003754539.1 CDS Hden_0396 NC_014313.1 403788 404384 R KEGG: pla:Plav_0191 sigma 54 modulation protein/ribosomal protein S30EA; TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/30S ribosomal protein S30EA complement(403788..404384) Hyphomicrobium denitrificans ATCC 51888 9386274 YP_003754540.1 CDS Hden_0397 NC_014313.1 404604 406136 R KEGG: oca:OCAR_4459 RNA polymerase factor sigma-54; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor; sigma-54 factor core-binding region; RNA polymerase, sigma-54 subunit RpoN complement(404604..406136) Hyphomicrobium denitrificans ATCC 51888 9386275 YP_003754541.1 CDS Hden_0398 NC_014313.1 406183 407049 R KEGG: bbt:BBta_0122 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(406183..407049) Hyphomicrobium denitrificans ATCC 51888 9386276 YP_003754542.1 CDS Hden_0399 NC_014313.1 407108 409030 R PFAM: OstA family protein; protein of unknown function DUF1239; KEGG: pla:Plav_0194 cell envelope biogenesis YhbN; OstA family protein complement(407108..409030) Hyphomicrobium denitrificans ATCC 51888 9386277 YP_003754543.1 CDS Hden_0400 NC_014313.1 409170 409787 R KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease; 3'-5' exonuclease complement(409170..409787) Hyphomicrobium denitrificans ATCC 51888 9386278 YP_003754544.1 CDS Hden_0401 NC_014313.1 409927 411294 R KEGG: cli:Clim_1656 hypothetical protein; hypothetical protein complement(409927..411294) Hyphomicrobium denitrificans ATCC 51888 9386279 YP_003754545.1 CDS Hden_0402 NC_014313.1 411722 412069 D KEGG: msl:Msil_0262 hypothetical protein; hypothetical protein 411722..412069 Hyphomicrobium denitrificans ATCC 51888 9386280 YP_003754546.1 CDS Hden_0403 NC_014313.1 412164 412571 R PFAM: DoxX family protein; KEGG: mpo:Mpop_0499 DoxX family protein; DoxX family protein complement(412164..412571) Hyphomicrobium denitrificans ATCC 51888 9386281 YP_003754547.1 CDS Hden_0404 NC_014313.1 412712 413647 R KEGG: atc:AGR_C_3412 thermolabile glutaminase (glutaminase A); PFAM: glutaminase, core; glutaminase complement(412712..413647) Hyphomicrobium denitrificans ATCC 51888 9386282 YP_003754548.1 CDS Hden_0405 NC_014313.1 413977 416898 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; KEGG: mei:Msip34_1977 outer membrane autotransporter barrel domain protein; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein complement(413977..416898) Hyphomicrobium denitrificans ATCC 51888 9386283 YP_003754549.1 CDS Hden_0406 NC_014313.1 417574 417855 D KEGG: pop:POPTR_562495 hypothetical protein; hypothetical protein 417574..417855 Hyphomicrobium denitrificans ATCC 51888 9386285 YP_003754550.1 CDS Hden_0407 NC_014313.1 417923 418309 R KEGG: gem:GM21_3035 large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(417923..418309) Hyphomicrobium denitrificans ATCC 51888 9386286 YP_003754551.1 CDS Hden_0408 NC_014313.1 418486 418845 D TIGRFAM: solute symporter protein; KEGG: eba:ebA828 hypothetical protein; solute symporter protein 418486..418845 Hyphomicrobium denitrificans ATCC 51888 9386287 YP_003754552.1 CDS Hden_0409 NC_014313.1 418855 420690 D PFAM: Na+/solute symporter; KEGG: tro:trd_1113 sodium/solute symporter; Na+/solute symporter 418855..420690 Hyphomicrobium denitrificans ATCC 51888 9386288 YP_003754553.1 CDS Hden_0410 NC_014313.1 420852 421817 D KEGG: pla:Plav_0503 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 420852..421817 Hyphomicrobium denitrificans ATCC 51888 9386289 YP_003754554.1 CDS Hden_0411 NC_014313.1 421829 422347 R KEGG: oan:Oant_0406 hypothetical protein; hypothetical protein complement(421829..422347) Hyphomicrobium denitrificans ATCC 51888 9386290 YP_003754555.1 CDS Hden_0412 NC_014313.1 422700 425318 D KEGG: pla:Plav_0458 peptidoglycan binding domain-containing protein; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 422700..425318 Hyphomicrobium denitrificans ATCC 51888 9386291 YP_003754556.1 CDS Hden_0413 NC_014313.1 425501 426424 D PFAM: protein of unknown function DUF81; KEGG: mes:Meso_0026 hypothetical protein; hypothetical protein 425501..426424 Hyphomicrobium denitrificans ATCC 51888 9386292 YP_003754557.1 CDS Hden_0414 NC_014313.1 426424 427218 D PFAM: conserved hypothetical protein; KEGG: pla:Plav_0456 hypothetical protein; hypothetical protein 426424..427218 Hyphomicrobium denitrificans ATCC 51888 9386293 YP_003754558.1 CDS Hden_0415 NC_014313.1 427223 427945 R PFAM: metallophosphoesterase; KEGG: rpt:Rpal_0876 metallophosphoesterase; metallophosphoesterase complement(427223..427945) Hyphomicrobium denitrificans ATCC 51888 9386294 YP_003754559.1 CDS Hden_0416 NC_014313.1 427911 430493 R KEGG: bmr:BMI_II819 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: DEAD/H associated domain protein; DEAD/DEAH box helicase domain protein; helicase; SMART: DEAD-like helicase ; helicase domain protein; DEAD/H associated domain-containing protein complement(427911..430493) Hyphomicrobium denitrificans ATCC 51888 9386295 YP_003754560.1 CDS Hden_0417 NC_014313.1 430525 431613 R TIGRFAM: dihydroorotate dehydrogenase; KEGG: mes:Meso_0094 dihydroorotate dehydrogenase 2; PFAM: dihydroorotate oxidase; dihydroorotate dehydrogenase complement(430525..431613) Hyphomicrobium denitrificans ATCC 51888 9386296 YP_003754561.1 CDS Hden_0418 NC_014313.1 431607 431960 R PFAM: protein of unknown function DUF952; KEGG: rpd:RPD_0787 hypothetical protein; hypothetical protein complement(431607..431960) Hyphomicrobium denitrificans ATCC 51888 9386297 YP_003754562.1 CDS Hden_0419 NC_014313.1 432122 433927 D PFAM: protein of unknown function DUF262; protein of unknown function DUF1524 RloF; KEGG: mea:Mex_p20010 hypothetical protein; hypothetical protein 432122..433927 Hyphomicrobium denitrificans ATCC 51888 9386298 YP_003754563.1 CDS Hden_0420 NC_014313.1 433943 435595 R TIGRFAM: lysyl-tRNA synthetase; KEGG: bmr:BMI_II784 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; lysyl-tRNA synthetase complement(433943..435595) Hyphomicrobium denitrificans ATCC 51888 9386299 YP_003754564.1 CDS Hden_0421 NC_014313.1 435721 436371 R manually curated; KEGG: smd:Smed_4300 hypothetical protein; hypothetical protein complement(435721..436371) Hyphomicrobium denitrificans ATCC 51888 9386300 YP_003754565.1 CDS Hden_0422 NC_014313.1 436597 438072 D PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: rpe:RPE_0091 penicillin-insensitive murein endopeptidase; peptidase U6 penicillin-insensitive murein endopeptidase 436597..438072 Hyphomicrobium denitrificans ATCC 51888 9386301 YP_003754566.1 CDS Hden_0423 NC_014313.1 438114 438761 R TIGRFAM: peptide methionine sulfoxide reductase; KEGG: mno:Mnod_1140 peptide methionine sulfoxide reductase; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(438114..438761) Hyphomicrobium denitrificans ATCC 51888 9386302 YP_003754567.1 CDS Hden_0424 NC_014313.1 438877 439374 R KEGG: mes:Meso_3980 hypothetical protein; hypothetical protein complement(438877..439374) Hyphomicrobium denitrificans ATCC 51888 9386303 YP_003754568.1 CDS Hden_0425 NC_014313.1 439795 440799 R KEGG: gau:GAU_2472 hypothetical protein; hypothetical protein complement(439795..440799) Hyphomicrobium denitrificans ATCC 51888 9386305 YP_003754569.1 CDS Hden_0426 NC_014313.1 440796 443510 R KEGG: nar:Saro_0764 hypothetical protein; hypothetical protein complement(440796..443510) Hyphomicrobium denitrificans ATCC 51888 9386306 YP_003754570.1 CDS Hden_0427 NC_014313.1 443531 444268 R KEGG: nar:Saro_0765 hypothetical protein; hypothetical protein complement(443531..444268) Hyphomicrobium denitrificans ATCC 51888 9386307 YP_003754571.1 CDS Hden_0428 NC_014313.1 444321 444854 R KEGG: nar:Saro_0770 hypothetical protein; hypothetical protein complement(444321..444854) Hyphomicrobium denitrificans ATCC 51888 9386308 YP_003754572.1 CDS Hden_0429 NC_014313.1 445252 446439 R PFAM: succinylglutamate desuccinylase/aspartoacylase; KEGG: msl:Msil_3423 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(445252..446439) Hyphomicrobium denitrificans ATCC 51888 9386309 YP_003754573.1 CDS Hden_0430 NC_014313.1 446852 447199 R KEGG: mpo:Mpop_0997 hypothetical protein; hypothetical protein complement(446852..447199) Hyphomicrobium denitrificans ATCC 51888 9386310 YP_003754574.1 CDS Hden_0431 NC_014313.1 447526 448791 R PFAM: transposase mutator type; KEGG: mdi:METDI2659 transposase of IS1354, IS256 family; transposase mutator type complement(447526..448791) Hyphomicrobium denitrificans ATCC 51888 9386311 YP_003754575.1 CDS Hden_0432 NC_014313.1 448870 449052 R hypothetical protein complement(448870..449052) Hyphomicrobium denitrificans ATCC 51888 9386312 YP_003754576.1 CDS Hden_0433 NC_014313.1 449189 449659 R KEGG: dgr:Dgri_GH14159 GH14159 gene product from transcript GH14159-RA; hypothetical protein complement(449189..449659) Hyphomicrobium denitrificans ATCC 51888 9386313 YP_003754577.1 CDS Hden_0434 NC_014313.1 449656 452904 R KEGG: mea:Mex_1p2655 cobalt-zinc-cadmium resistance protein CzcA (cation efflux system protein CzcA); TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump complement(449656..452904) Hyphomicrobium denitrificans ATCC 51888 9386314 YP_003754578.1 CDS Hden_0435 NC_014313.1 452915 454216 R KEGG: mno:Mnod_2139 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; RND family efflux transporter MFP subunit complement(452915..454216) Hyphomicrobium denitrificans ATCC 51888 9386315 YP_003754579.1 CDS Hden_0436 NC_014313.1 455286 456917 D KEGG: dac:Daci_5149 ankyrin; PFAM: ankyrin; SMART: ankyrin; ankyrin 455286..456917 Hyphomicrobium denitrificans ATCC 51888 9386316 YP_003754580.1 CDS Hden_0437 NC_014313.1 457087 457614 D PFAM: NGN domain protein; KEGG: aeh:Mlg_0093 transcription antitermination protein NusG; NusG antitermination factor 457087..457614 Hyphomicrobium denitrificans ATCC 51888 9386317 YP_003754581.1 CDS Hden_0438 NC_014313.1 457659 458969 R PFAM: glycosyl transferase group 1; KEGG: mca:MCA1168 colanic acid biosynthesis glycosyl transferase; group 1 glycosyl transferase complement(457659..458969) Hyphomicrobium denitrificans ATCC 51888 9386318 YP_003754582.1 CDS Hden_0439 NC_014313.1 459025 459819 R PFAM: protein of unknown function DUF218; KEGG: rpe:RPE_3419 hypothetical protein; hypothetical protein complement(459025..459819) Hyphomicrobium denitrificans ATCC 51888 9386319 YP_003754583.1 CDS Hden_0440 NC_014313.1 459868 460443 R KEGG: rsp:RSP_7375 colanic acid biosynthesis acetyltransferase WcaF; colanic acid biosynthesis acetyltransferase WcaF complement(459868..460443) Hyphomicrobium denitrificans ATCC 51888 9386320 YP_003754584.1 CDS Hden_0441 NC_014313.1 460440 461600 R PFAM: glycosyl transferase group 1; KEGG: rba:RB2471 poly(glycerol-phosphate) alpha-glucosyltransferase; group 1 glycosyl transferase complement(460440..461600) Hyphomicrobium denitrificans ATCC 51888 9386321 YP_003754585.1 CDS Hden_0442 NC_014313.1 461597 462835 R PFAM: glycosyl transferase group 1; KEGG: cyc:PCC7424_5790 glycosyl transferase group 1; group 1 glycosyl transferase complement(461597..462835) Hyphomicrobium denitrificans ATCC 51888 9386322 YP_003754586.1 CDS Hden_0443 NC_014313.1 462838 464175 R KEGG: sus:acid_4652 transmembrane prediction; transmembrane prediction complement(462838..464175) Hyphomicrobium denitrificans ATCC 51888 9386323 YP_003754587.1 CDS Hden_0444 NC_014313.1 464214 465458 R PFAM: glycosyl transferase group 1; KEGG: bmi:BMEA_B0399 glycosyl transferase group 1; group 1 glycosyl transferase complement(464214..465458) Hyphomicrobium denitrificans ATCC 51888 9386324 YP_003754588.1 CDS Hden_0445 NC_014313.1 465451 466599 R PFAM: glycosyl transferase group 1; KEGG: pmc:P9515_14181 hypothetical protein; group 1 glycosyl transferase complement(465451..466599) Hyphomicrobium denitrificans ATCC 51888 9386325 YP_003754589.1 CDS Hden_0446 NC_014313.1 466587 467726 R PFAM: glycosyl transferase group 1; KEGG: pmc:P9515_13801 hypothetical protein; group 1 glycosyl transferase complement(466587..467726) Hyphomicrobium denitrificans ATCC 51888 9386326 YP_003754590.1 CDS Hden_0447 NC_014313.1 467723 468886 R PFAM: glycosyl transferase group 1; KEGG: pmc:P9515_13811 hypothetical protein; group 1 glycosyl transferase complement(467723..468886) Hyphomicrobium denitrificans ATCC 51888 9386327 YP_003754591.1 CDS Hden_0448 NC_014313.1 468895 469803 R TIGRFAM: methyltransferase FkbM family; KEGG: tmz:Tmz1t_2883 methyltransferase FkbM family; FkbM family methyltransferase complement(468895..469803) Hyphomicrobium denitrificans ATCC 51888 9386328 YP_003754592.1 CDS Hden_0449 NC_014313.1 469821 470690 R TIGRFAM: methyltransferase FkbM family; KEGG: sli:Slin_5205 methyltransferase FkbM family; FkbM family methyltransferase complement(469821..470690) Hyphomicrobium denitrificans ATCC 51888 9386329 YP_003754593.1 CDS Hden_0450 NC_014313.1 470707 471828 R PFAM: glycosyl transferase group 1; KEGG: ote:Oter_2759 glycosyl transferase group 1; group 1 glycosyl transferase complement(470707..471828) Hyphomicrobium denitrificans ATCC 51888 9386330 YP_003754594.1 CDS Hden_0451 NC_014313.1 471834 473108 R PFAM: polysaccharide biosynthesis protein; KEGG: pjd:Pjdr2_1229 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(471834..473108) Hyphomicrobium denitrificans ATCC 51888 9386331 YP_003754595.1 CDS Hden_0452 NC_014313.1 473331 474578 R KEGG: nhl:Nhal_1316 hypothetical protein; hypothetical protein complement(473331..474578) Hyphomicrobium denitrificans ATCC 51888 9386332 YP_003754596.1 CDS Hden_0453 NC_014313.1 474617 475201 R KEGG: eba:ebA6795 hypothetical protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(474617..475201) Hyphomicrobium denitrificans ATCC 51888 9386333 YP_003754597.1 CDS Hden_0454 NC_014313.1 475198 477528 R TIGRFAM: capsular exopolysaccharide family; KEGG: eba:ebA6797 exopolysaccharide biosynthesis protein; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family complement(475198..477528) Hyphomicrobium denitrificans ATCC 51888 9386334 YP_003754598.1 CDS Hden_0456 NC_014313.1 478368 479138 R KEGG: eba:ebA6802 capsular polysaccharide biosynthesis protein; PFAM: PHP domain protein; protein-tyrosine-phosphatase complement(478368..479138) Hyphomicrobium denitrificans ATCC 51888 9386336 YP_003754599.1 CDS Hden_0457 NC_014313.1 479467 479973 D KEGG: eba:ebA6791 hypothetical protein; hypothetical protein 479467..479973 Hyphomicrobium denitrificans ATCC 51888 9386337 YP_003754600.1 CDS Hden_0458 NC_014313.1 479999 481561 D PFAM: O-antigen polymerase; KEGG: eba:ebA5975 binding-protein-dependent transporter protein; O-antigen polymerase 479999..481561 Hyphomicrobium denitrificans ATCC 51888 9386338 YP_003754601.1 CDS Hden_0459 NC_014313.1 481665 483242 R PFAM: sugar transferase; KEGG: rso:RS02342 glycosyl transferase transmembrane protein; sugar transferase complement(481665..483242) Hyphomicrobium denitrificans ATCC 51888 9386339 YP_003754602.1 CDS Hden_0460 NC_014313.1 483402 483794 R PFAM: protein of unknown function DUF983; KEGG: bid:Bind_1611 hypothetical protein; hypothetical protein complement(483402..483794) Hyphomicrobium denitrificans ATCC 51888 9386340 YP_003754603.1 CDS Hden_0461 NC_014313.1 484039 485400 D KEGG: rsk:RSKD131_3171 hypothetical protein; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 484039..485400 Hyphomicrobium denitrificans ATCC 51888 9386341 YP_003754604.1 CDS Hden_0462 NC_014313.1 485479 486480 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: scl:sce4293 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 485479..486480 Hyphomicrobium denitrificans ATCC 51888 9386342 YP_003754605.1 CDS Hden_0463 NC_014313.1 486586 487398 D KEGG: atc:AGR_C_4642 molybdate-binding periplasmic protein; TIGRFAM: molybdenum ABC transporter periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; molybdenum ABC transporter periplasmic molybdate-binding protein 486586..487398 Hyphomicrobium denitrificans ATCC 51888 9386343 YP_003754606.1 CDS Hden_0464 NC_014313.1 487432 488130 D KEGG: msl:Msil_0059 molybdate ABC transporter inner membrane subunit; TIGRFAM: molybdate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; molybdate ABC transporter inner membrane subunit 487432..488130 Hyphomicrobium denitrificans ATCC 51888 9386344 YP_003754607.1 CDS Hden_0465 NC_014313.1 488127 488849 D KEGG: mno:Mnod_3727 molybdate ABC transporter ATPase subunit; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 488127..488849 Hyphomicrobium denitrificans ATCC 51888 9386345 YP_003754608.1 CDS Hden_0466 NC_014313.1 488909 489274 R PFAM: regulatory protein LysR; KEGG: bbt:BBta_1642 LysR family transcriptional regulator; ModE family transcriptional regulator complement(488909..489274) Hyphomicrobium denitrificans ATCC 51888 9386346 YP_003754609.1 CDS Hden_0467 NC_014313.1 489519 490280 R PFAM: ABC transporter; KEGG: rpt:Rpal_4025 ABC-2 type transporter; ABC transporter complement(489519..490280) Hyphomicrobium denitrificans ATCC 51888 9386347 YP_003754610.1 CDS Hden_0468 NC_014313.1 490277 491203 R KEGG: nwi:Nwi_2361 ABC transporter ATPase; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(490277..491203) Hyphomicrobium denitrificans ATCC 51888 9386348 YP_003754611.1 CDS Hden_0469 NC_014313.1 491394 491597 R KEGG: rsp:RSP_0920 biopolymer transporter, ExbB; hypothetical protein complement(491394..491597) Hyphomicrobium denitrificans ATCC 51888 9386349 YP_003754612.1 CDS Hden_0470 NC_014313.1 491736 492332 D PFAM: regulatory protein TetR; KEGG: rpt:Rpal_3430 TetR family transcriptional regulator; TetR family transcriptional regulator 491736..492332 Hyphomicrobium denitrificans ATCC 51888 9386350 YP_003754613.1 CDS Hden_0471 NC_014313.1 492412 493716 D PFAM: NHL repeat containing protein; KEGG: mno:Mnod_3274 glucose/sorbosone dehydrogenase; NHL repeat containing protein 492412..493716 Hyphomicrobium denitrificans ATCC 51888 9386351 YP_003754614.1 CDS Hden_0472 NC_014313.1 493864 494874 D KEGG: reu:Reut_B4897 NAD-dependent epimerase/dehydratase; TIGRFAM: hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 493864..494874 Hyphomicrobium denitrificans ATCC 51888 9386352 YP_003754615.1 CDS Hden_0473 NC_014313.1 494871 496037 D KEGG: bur:Bcep18194_B0107 glycosyl transferase family protein; TIGRFAM: hopene-associated glycosyltransferase HpnB; PFAM: glycosyl transferase family 2; hopene-associated glycosyltransferase HpnB 494871..496037 Hyphomicrobium denitrificans ATCC 51888 9386353 YP_003754616.1 CDS Hden_0474 NC_014313.1 496034 496918 D KEGG: oca:OCAR_6674 squalene synthase HpnC; TIGRFAM: squalene synthase HpnC; PFAM: Squalene/phytoene synthase; squalene synthase HpnC 496034..496918 Hyphomicrobium denitrificans ATCC 51888 9386354 YP_003754617.1 CDS Hden_0475 NC_014313.1 496915 497757 D TIGRFAM: squalene synthase HpnD; KEGG: mno:Mnod_7144 squalene synthase HpnD; PFAM: Squalene/phytoene synthase; squalene synthase HpnD 496915..497757 Hyphomicrobium denitrificans ATCC 51888 9386355 YP_003754618.1 CDS Hden_0476 NC_014313.1 497757 499010 D KEGG: met:M446_6348 squalene-associated FAD-dependent desaturase; TIGRFAM: squalene-associated FAD-dependent desaturase; PFAM: amine oxidase; squalene-associated FAD-dependent desaturase 497757..499010 Hyphomicrobium denitrificans ATCC 51888 9386356 YP_003754619.1 CDS Hden_0477 NC_014313.1 499040 501037 D TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; KEGG: mno:Mnod_7146 squalene-hopene cyclase; PFAM: prenyltransferase/squalene oxidase; squalene/oxidosqualene cyclase 499040..501037 Hyphomicrobium denitrificans ATCC 51888 9386357 YP_003754620.1 CDS Hden_0478 NC_014313.1 501041 501724 D KEGG: bid:Bind_3157 hypothetical protein; TIGRFAM: hopanoid-associated phosphorylase; PFAM: purine or other phosphorylase family 1; hopanoid-associated phosphorylase 501041..501724 Hyphomicrobium denitrificans ATCC 51888 9386358 YP_003754621.1 CDS Hden_0479 NC_014313.1 501668 502816 R TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: radical SAM protein; KEGG: msl:Msil_3245 hopanoid biosynthesis associated radical SAM protein HpnH; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnH complement(501668..502816) Hyphomicrobium denitrificans ATCC 51888 9386359 YP_003754622.1 CDS Hden_0480 NC_014313.1 502858 503787 R TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: zmn:Za10_0417 hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(502858..503787) Hyphomicrobium denitrificans ATCC 51888 9386360 YP_003754623.1 CDS Hden_0481 NC_014313.1 504118 506745 D TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: msl:Msil_3246 hopanoid biosynthesis associated RND transporter like protein HpnN; hopanoid biosynthesis associated RND transporter like protein HpnN 504118..506745 Hyphomicrobium denitrificans ATCC 51888 9386361 YP_003754624.1 CDS Hden_0482 NC_014313.1 506762 508180 R TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: radical SAM protein; KEGG: met:M446_6339 hopanoid biosynthesis associated radical SAM protein HpnJ; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnJ complement(506762..508180) Hyphomicrobium denitrificans ATCC 51888 9386362 YP_003754625.1 CDS Hden_0483 NC_014313.1 508192 509325 R TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; KEGG: hopanoid biosynthesis associated glycosyl transferase protein HpnI; hopanoid biosynthesis associated glycosyl transferase protein HpnI complement(508192..509325) Hyphomicrobium denitrificans ATCC 51888 9386363 YP_003754626.1 CDS Hden_0484 NC_014313.1 509460 510425 D PFAM: VacJ family lipoprotein; KEGG: hne:HNE_2105 lipoprotein VacJ; VacJ family lipoprotein 509460..510425 Hyphomicrobium denitrificans ATCC 51888 9386364 YP_003754627.1 CDS Hden_0485 NC_014313.1 510634 511263 R KEGG: rru:Rru_A0056 toluene tolerance; TIGRFAM: hopanoid biosynthesis associated membrane protein HpnM; PFAM: toluene tolerance family protein; hopanoid biosynthesis associated membrane protein HpnM complement(510634..511263) Hyphomicrobium denitrificans ATCC 51888 9386365 YP_003754628.1 CDS Hden_0486 NC_014313.1 511502 513448 D TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase; transketolase; KEGG: bra:BRADO2161 1-deoxy-D-xylulose-5-phosphate synthase; SMART: transketolase central region; deoxyxylulose-5-phosphate synthase 511502..513448 Hyphomicrobium denitrificans ATCC 51888 9386366 YP_003754629.1 CDS Hden_0487 NC_014313.1 513445 514479 R KEGG: mag:amb3101 hypothetical protein; hypothetical protein complement(513445..514479) Hyphomicrobium denitrificans ATCC 51888 9386367 YP_003754630.1 CDS Hden_0488 NC_014313.1 514472 515677 R KEGG: reh:H16_B2171 cell wall biosynthesis glycosyltransferase; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; PFAM: glycosyl transferase family 2; hopanoid biosynthesis associated glycosyl transferase protein HpnI complement(514472..515677) Hyphomicrobium denitrificans ATCC 51888 9386368 YP_003754631.1 CDS Hden_0489 NC_014313.1 515778 516641 R KEGG: mag:amb3100 hypothetical protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK; PFAM: YdjC family protein; hopanoid biosynthesis associated protein HpnK complement(515778..516641) Hyphomicrobium denitrificans ATCC 51888 9386369 YP_003754632.1 CDS Hden_0490 NC_014313.1 516722 516982 R KEGG: bja:bsr4462 hypothetical protein; hypothetical protein complement(516722..516982) Hyphomicrobium denitrificans ATCC 51888 9386370 YP_003754633.1 CDS Hden_0491 NC_014313.1 517147 517518 R KEGG: cre:CHLREDRAFT_190948 hypothetical protein; hypothetical protein complement(517147..517518) Hyphomicrobium denitrificans ATCC 51888 9386371 YP_003754634.1 CDS Hden_0492 NC_014313.1 517655 518545 R KEGG: rru:Rru_A1617 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1289; hypothetical protein complement(517655..518545) Hyphomicrobium denitrificans ATCC 51888 9386372 YP_003754635.1 CDS Hden_0493 NC_014313.1 518604 519347 R KEGG: bch:Bcen2424_5288 hypothetical protein; hypothetical protein complement(518604..519347) Hyphomicrobium denitrificans ATCC 51888 9386373 YP_003754636.1 CDS Hden_0494 NC_014313.1 519367 519576 R KEGG: rpc:RPC_2504 hypothetical protein; hypothetical protein complement(519367..519576) Hyphomicrobium denitrificans ATCC 51888 9386374 YP_003754637.1 CDS Hden_0495 NC_014313.1 519773 520333 D KEGG: rpc:RPC_2505 phosphoglycerate mutase; PFAM: phosphoglycerate mutase; SMART: phosphoglycerate mutase; phosphoglycerate mutase 519773..520333 Hyphomicrobium denitrificans ATCC 51888 9386375 YP_003754638.1 CDS Hden_0496 NC_014313.1 520349 522319 R PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; KEGG: bja:bll2448 cellulose synthase catalytic subunit; family 2 glycosyl transferase complement(520349..522319) Hyphomicrobium denitrificans ATCC 51888 9386376 YP_003754639.1 CDS Hden_0497 NC_014313.1 522334 523779 R KEGG: bja:bll2449 hypothetical protein; hypothetical protein complement(522334..523779) Hyphomicrobium denitrificans ATCC 51888 9386377 YP_003754640.1 CDS Hden_0498 NC_014313.1 524015 524257 R KEGG: pol:Bpro_5177 hypothetical protein; hypothetical protein complement(524015..524257) Hyphomicrobium denitrificans ATCC 51888 9386378 YP_003754641.1 CDS Hden_0499 NC_014313.1 524455 525657 D PFAM: major facilitator superfamily MFS_1; KEGG: rpb:RPB_2415 major facilitator transporter; major facilitator superfamily protein 524455..525657 Hyphomicrobium denitrificans ATCC 51888 9386379 YP_003754642.1 CDS Hden_0500 NC_014313.1 525654 527444 R manually curated; PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: nwi:Nwi_1064 ABC transporter transmembrane region; SMART: ATPase AAA; ABC transporter complement(525654..527444) Hyphomicrobium denitrificans ATCC 51888 9386380 YP_003754643.1 CDS Hden_0501 NC_014313.1 527736 528638 R KEGG: slt:Slit_2909 glucose-1-phosphate thymidylyltransferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase complement(527736..528638) Hyphomicrobium denitrificans ATCC 51888 9386381 YP_003754644.1 CDS Hden_0502 NC_014313.1 528635 529726 R KEGG: mno:Mnod_4335 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase complement(528635..529726) Hyphomicrobium denitrificans ATCC 51888 9386382 YP_003754645.1 CDS Hden_0503 NC_014313.1 529760 530311 R TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; KEGG: rru:Rru_B0038 dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(529760..530311) Hyphomicrobium denitrificans ATCC 51888 9386383 YP_003754646.1 CDS Hden_0504 NC_014313.1 530477 532291 D PFAM: protein of unknown function UPF0118; KEGG: xau:Xaut_1431 hypothetical protein; hypothetical protein 530477..532291 Hyphomicrobium denitrificans ATCC 51888 9386384 YP_003754647.1 CDS Hden_0505 NC_014313.1 532375 532656 D KEGG: bra:BRADO1053 hypothetical protein; hypothetical protein 532375..532656 Hyphomicrobium denitrificans ATCC 51888 9386385 YP_003754648.1 CDS Hden_0506 NC_014313.1 532672 533190 D KEGG: hne:HNE_2267 hypothetical protein; hypothetical protein 532672..533190 Hyphomicrobium denitrificans ATCC 51888 9386386 YP_003754649.1 CDS Hden_0507 NC_014313.1 533203 533592 D KEGG: pti:PHATR_46635 hypothetical protein; hypothetical protein 533203..533592 Hyphomicrobium denitrificans ATCC 51888 9386387 YP_003754650.1 CDS Hden_0508 NC_014313.1 533630 533959 R PFAM: cupin; KEGG: nha:Nham_1257 hypothetical protein; cupin complement(533630..533959) Hyphomicrobium denitrificans ATCC 51888 9386388 YP_003754651.1 CDS Hden_0509 NC_014313.1 533983 534342 R KEGG: bja:bll4718 hypothetical protein; hypothetical protein complement(533983..534342) Hyphomicrobium denitrificans ATCC 51888 9386389 YP_003754652.1 CDS Hden_0510 NC_014313.1 534511 535284 R PFAM: oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mrd:Mrad2831_6157 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD-binding domain-containing protein complement(534511..535284) Hyphomicrobium denitrificans ATCC 51888 9386390 YP_003754653.1 CDS Hden_0511 NC_014313.1 535435 536664 R KEGG: oca:OCAR_7340 hypothetical protein; hypothetical protein complement(535435..536664) Hyphomicrobium denitrificans ATCC 51888 9386391 YP_003754654.1 CDS Hden_0512 NC_014313.1 537170 538063 D PFAM: glutamine amidotransferase class-II; KEGG: atc:AGR_L_1268 hypothetical protein; glutamine amidotransferase class-II 537170..538063 Hyphomicrobium denitrificans ATCC 51888 9386392 YP_003754655.1 CDS Hden_0513 NC_014313.1 538086 538772 D PFAM: glutamate synthase subunit alpha domain protein; KEGG: ret:RHE_PE00420 formyl-methanofuran dehydrogenase domain-containing protein; glutamate synthase subunit alpha domain-containing protein 538086..538772 Hyphomicrobium denitrificans ATCC 51888 9386393 YP_003754656.1 CDS Hden_0514 NC_014313.1 538772 540112 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: rlg:Rleg_6577 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 538772..540112 Hyphomicrobium denitrificans ATCC 51888 9386394 YP_003754657.1 CDS Hden_0515 NC_014313.1 540165 541499 D KEGG: mlo:mll7307 glutamine synthetase III; TIGRFAM: glutamine synthetaseII; PFAM: glutamine synthetase; glutamine synthetaseII 540165..541499 Hyphomicrobium denitrificans ATCC 51888 9386395 YP_003754658.1 CDS Hden_0516 NC_014313.1 541637 542356 D PFAM: glutamine amidotransferase class-I; KEGG: rpc:RPC_0879 glutamine amidotransferase class-I; glutamine amidotransferase class-I 541637..542356 Hyphomicrobium denitrificans ATCC 51888 9386396 YP_003754659.1 CDS Hden_0517 NC_014313.1 542777 545470 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bja:bll6183 hypothetical protein; TonB-dependent receptor 542777..545470 Hyphomicrobium denitrificans ATCC 51888 9386397 YP_003754660.1 CDS Hden_0518 NC_014313.1 545663 546760 D PFAM: glycoside hydrolase; KEGG: bid:Bind_0865 glycoside hydrolase family 3 protein; glycoside hydrolase 545663..546760 Hyphomicrobium denitrificans ATCC 51888 9386398 YP_003754661.1 CDS Hden_0519 NC_014313.1 546935 547678 D PFAM: protein of unknown function DUF2470; pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mes:Meso_2207 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; hypothetical protein 546935..547678 Hyphomicrobium denitrificans ATCC 51888 9386399 YP_003754662.1 CDS Hden_0520 NC_014313.1 547578 548393 R KEGG: rpc:RPC_4886 HhH-GPD; PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; HhH-GPD family protein complement(547578..548393) Hyphomicrobium denitrificans ATCC 51888 9386400 YP_003754663.1 CDS Hden_0521 NC_014313.1 548453 548899 R TIGRFAM: methionine-R-sulfoxide reductase; KEGG: ara:Arad_1327 methionine sulfoxide reductase B; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(548453..548899) Hyphomicrobium denitrificans ATCC 51888 9386401 YP_003754664.1 CDS Hden_0522 NC_014313.1 549044 550177 R KEGG: yli:YALI0B22110g YALI0B22110p; hypothetical protein complement(549044..550177) Hyphomicrobium denitrificans ATCC 51888 9386402 YP_003754665.1 CDS Hden_0523 NC_014313.1 550320 550529 R KEGG: rfr:Rfer_1604 hypothetical protein; hypothetical protein complement(550320..550529) Hyphomicrobium denitrificans ATCC 51888 9386403 YP_003754666.1 CDS Hden_0524 NC_014313.1 550532 551122 R KEGG: mms:mma_3236 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit complement(550532..551122) Hyphomicrobium denitrificans ATCC 51888 9386404 YP_003754667.1 CDS Hden_0525 NC_014313.1 551292 552272 D PFAM: catalase related subgroup; KEGG: bur:Bcep18194_C7513 catalase-like; catalase related subgroup 551292..552272 Hyphomicrobium denitrificans ATCC 51888 9386405 YP_003754668.1 CDS Hden_0526 NC_014313.1 552588 553895 D PFAM: general substrate transporter; KEGG: har:HEAR3004 MFS family transporter; general substrate transporter 552588..553895 Hyphomicrobium denitrificans ATCC 51888 9386406 YP_003754669.1 CDS Hden_0527 NC_014313.1 554656 555816 D PFAM: Soluble ligand binding domain; KEGG: nhl:Nhal_2430 respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain-containing protein 554656..555816 Hyphomicrobium denitrificans ATCC 51888 9386407 YP_003754670.1 CDS Hden_0528 NC_014313.1 555863 556021 D KEGG: dmo:Dmoj_GI13511 GI13511 gene product from transcript GI13511-RA; hypothetical protein 555863..556021 Hyphomicrobium denitrificans ATCC 51888 9386408 YP_003754671.1 CDS Hden_0529 NC_014313.1 556033 556965 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_4699 LysR family transcriptional regulator; LysR family transcriptional regulator complement(556033..556965) Hyphomicrobium denitrificans ATCC 51888 9386409 YP_003754672.1 CDS Hden_0530 NC_014313.1 557636 558850 D PFAM: protein of unknown function DUF2302; KEGG: cli:Clim_2385 OmpA/MotB domain protein; hypothetical protein 557636..558850 Hyphomicrobium denitrificans ATCC 51888 9386410 YP_003754673.1 CDS Hden_0531 NC_014313.1 558918 560270 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: sme:SMa0228 glutamate dehydrogenase; Glu/Leu/Phe/Val dehydrogenase complement(558918..560270) Hyphomicrobium denitrificans ATCC 51888 9386411 YP_003754674.1 CDS Hden_0532 NC_014313.1 560844 562118 D KEGG: azc:AZC_1368 ABC transporter periplasmic substrate-binding protein; ABC transporter periplasmic substrate-binding protein 560844..562118 Hyphomicrobium denitrificans ATCC 51888 9386412 YP_003754675.1 CDS Hden_0533 NC_014313.1 562175 562951 R KEGG: azc:AZC_1369 transcriptional regulatory protein; PFAM: GntR family transcriptional regulator; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator; GntR family transcriptional regulator complement(562175..562951) Hyphomicrobium denitrificans ATCC 51888 9386413 YP_003754676.1 CDS Hden_0534 NC_014313.1 563180 563323 R hypothetical protein complement(563180..563323) Hyphomicrobium denitrificans ATCC 51888 9386414 YP_003754677.1 CDS Hden_0535 NC_014313.1 563451 565640 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; monooxygenase FAD-binding; KEGG: bph:Bphy_5960 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 563451..565640 Hyphomicrobium denitrificans ATCC 51888 9386415 YP_003754678.1 CDS Hden_0536 NC_014313.1 565773 568970 D PFAM: electron transfer flavoprotein alpha/beta-subunit ; protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bph:Bphy_5959 hypothetical protein; electron transfer flavoprotein alpha/beta-subunit 565773..568970 Hyphomicrobium denitrificans ATCC 51888 9386416 YP_003754679.1 CDS Hden_0537 NC_014313.1 568973 569938 D KEGG: bph:Bphy_5956 electron transfer flavoprotein alpha subunit; PFAM: electron transfer flavoprotein alpha/beta-subunit ; electron transfer flavoprotein subunit alpha; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 568973..569938 Hyphomicrobium denitrificans ATCC 51888 9386417 YP_003754680.1 CDS Hden_0538 NC_014313.1 569998 571773 D KEGG: azc:AZC_1370 amino acid transporter permease protein; amino acid transporter permease 569998..571773 Hyphomicrobium denitrificans ATCC 51888 9386418 YP_003754681.1 CDS Hden_0539 NC_014313.1 571951 573072 D PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; KEGG: msl:Msil_3605 glycine cleavage T protein (aminomethyl transferase); glycine cleavage system protein T 571951..573072 Hyphomicrobium denitrificans ATCC 51888 9386419 YP_003754682.1 CDS Hden_0540 NC_014313.1 573515 575794 D KEGG: rhi:NGR_c23520 hemin receptor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent heme/hemoglobin receptor family protein 573515..575794 Hyphomicrobium denitrificans ATCC 51888 9386420 YP_003754683.1 CDS Hden_0541 NC_014313.1 575921 576265 D PFAM: antibiotic biosynthesis monooxygenase; KEGG: bph:Bphy_6540 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 575921..576265 Hyphomicrobium denitrificans ATCC 51888 9386421 YP_003754684.1 CDS Hden_0542 NC_014313.1 576304 577428 D TIGRFAM: TonB family protein; KEGG: sme:SMc01515 hypothetical protein; TonB family protein 576304..577428 Hyphomicrobium denitrificans ATCC 51888 9386422 YP_003754685.1 CDS Hden_0543 NC_014313.1 577403 577546 R hypothetical protein complement(577403..577546) Hyphomicrobium denitrificans ATCC 51888 9386423 YP_003754686.1 CDS Hden_0544 NC_014313.1 577740 579428 R KEGG: app:CAP2UW1_2797 hypothetical protein; hypothetical protein complement(577740..579428) Hyphomicrobium denitrificans ATCC 51888 9386424 YP_003754687.1 CDS Hden_0545 NC_014313.1 579692 580000 R KEGG: ssl:SS1G_12938 hypothetical protein; hypothetical protein complement(579692..580000) Hyphomicrobium denitrificans ATCC 51888 9386425 YP_003754688.1 CDS Hden_0546 NC_014313.1 580140 581330 R PFAM: NnrS family protein; KEGG: oca:OCAR_5023 NnrS family protein; NnrS family protein complement(580140..581330) Hyphomicrobium denitrificans ATCC 51888 9386426 YP_003754689.1 CDS Hden_0547 NC_014313.1 581405 582028 R KEGG: oca:OCAR_5528 hypothetical protein; hypothetical protein complement(581405..582028) Hyphomicrobium denitrificans ATCC 51888 9386427 YP_003754690.1 CDS Hden_0548 NC_014313.1 582138 582869 R KEGG: sro:Sros_9004 dihydroorotate oxidase; manually curated; PFAM: dihydroorotate oxidase; dihydroorotate oxidase complement(582138..582869) Hyphomicrobium denitrificans ATCC 51888 9386428 YP_003754691.1 CDS Hden_0549 NC_014313.1 582866 583933 R KEGG: hha:Hhal_0570 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine transaminase complement(582866..583933) Hyphomicrobium denitrificans ATCC 51888 9386429 YP_003754692.1 CDS Hden_0550 NC_014313.1 583945 584451 R KEGG: psa:PST_2067 hypothetical protein; hypothetical protein complement(583945..584451) Hyphomicrobium denitrificans ATCC 51888 9386430 YP_003754693.1 CDS Hden_0551 NC_014313.1 584503 585654 R TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM protein; KEGG: tmz:Tmz1t_2836 coenzyme PQQ biosynthesis protein E; SMART: Elongator protein 3/MiaB/NifB; coenzyme PQQ biosynthesis protein E complement(584503..585654) Hyphomicrobium denitrificans ATCC 51888 9386431 YP_003754694.1 CDS Hden_0552 NC_014313.1 585623 585910 R PFAM: coenzyme PQQ synthesis D; KEGG: psa:PST_2069 pyrroloquinoline quinone biosynthesis protein D; coenzyme PQQ synthesis D complement(585623..585910) Hyphomicrobium denitrificans ATCC 51888 9386432 YP_003754695.1 CDS Hden_0553 NC_014313.1 585973 586080 R KEGG: psa:PST_2070 hypothetical protein; TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A complement(585973..586080) Hyphomicrobium denitrificans ATCC 51888 9386433 YP_003754696.1 CDS Hden_0554 NC_014313.1 586320 587594 R PFAM: beta-ketoacyl synthase; KEGG: nha:Nham_1503 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase complement(586320..587594) Hyphomicrobium denitrificans ATCC 51888 9386434 YP_003754697.1 CDS Hden_0555 NC_014313.1 587602 588798 R PFAM: beta-ketoacyl synthase; KEGG: rpc:RPC_2109 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase complement(587602..588798) Hyphomicrobium denitrificans ATCC 51888 9386435 YP_003754698.1 CDS Hden_0556 NC_014313.1 588810 589874 R PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: rec:RHECIAT_CH0002576 probable alcohol dehydrogenase protein; alcohol dehydrogenase zinc-binding domain-containing protein complement(588810..589874) Hyphomicrobium denitrificans ATCC 51888 9386436 YP_003754699.1 CDS Hden_0557 NC_014313.1 589918 591201 R PFAM: beta-ketoacyl synthase; KEGG: rpe:RPE_2020 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase complement(589918..591201) Hyphomicrobium denitrificans ATCC 51888 9386437 YP_003754700.1 CDS Hden_0558 NC_014313.1 591213 592436 R PFAM: beta-ketoacyl synthase; KEGG: rpb:RPB_3355 3-oxoacyl-(acyl carrier protein) synthase II; beta-ketoacyl synthase complement(591213..592436) Hyphomicrobium denitrificans ATCC 51888 9386438 YP_003754701.1 CDS Hden_0559 NC_014313.1 592438 592908 R PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: nwi:Nwi_1245 3-hydroxymyristoyl-acyl carrier protein dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ complement(592438..592908) Hyphomicrobium denitrificans ATCC 51888 9386439 YP_003754702.1 CDS Hden_0560 NC_014313.1 592921 593202 R PFAM: phosphopantetheine-binding; KEGG: xau:Xaut_1263 acyl carrier protein; phosphopantetheine-binding protein complement(592921..593202) Hyphomicrobium denitrificans ATCC 51888 9386440 YP_003754703.1 CDS Hden_0561 NC_014313.1 593411 594619 D KEGG: hoh:Hoch_5030 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: MaoC domain protein dehydratase; short-chain dehydrogenase/reductase SDR; MaoC domain-containing protein dehydratase 593411..594619 Hyphomicrobium denitrificans ATCC 51888 9386441 YP_003754704.1 CDS Hden_0562 NC_014313.1 594633 596831 D TIGRFAM: FkbH like protein; HAD-superfamily phosphatase, subfamily IIIC; KEGG: sus:acid_7156 FkbH like protein; FkbH like protein 594633..596831 Hyphomicrobium denitrificans ATCC 51888 9386442 YP_003754705.1 CDS Hden_0563 NC_014313.1 596833 597084 D KEGG: gme:Gmet_2339 acyl carrier protein; hypothetical protein 596833..597084 Hyphomicrobium denitrificans ATCC 51888 9386443 YP_003754706.1 CDS Hden_0564 NC_014313.1 597101 597673 R manually curated; TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; KEGG: mes:Meso_4292 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(597101..597673) Hyphomicrobium denitrificans ATCC 51888 9386444 YP_003754707.1 CDS Hden_0565 NC_014313.1 597670 599169 R KEGG: mes:Meso_4293 3-octaprenyl-4hydroxybenzoate decarboxylase; TIGRFAM: UbiD family decarboxylase; PFAM: carboxylyase-related protein; UbiD family decarboxylase complement(597670..599169) Hyphomicrobium denitrificans ATCC 51888 9386445 YP_003754708.1 CDS Hden_0566 NC_014313.1 599302 599850 D KEGG: mes:Meso_4295 lipid carrier protein-like; lipid carrier protein-like protein 599302..599850 Hyphomicrobium denitrificans ATCC 51888 9386446 YP_003754709.1 CDS Hden_0567 NC_014313.1 599847 600848 D PFAM: peptidase U32; KEGG: mes:Meso_4296 peptidase U32; peptidase U32 599847..600848 Hyphomicrobium denitrificans ATCC 51888 9386447 YP_003754710.1 CDS Hden_0568 NC_014313.1 600854 601753 D PFAM: peptidase U32; KEGG: mes:Meso_4297 peptidase U32; peptidase U32 600854..601753 Hyphomicrobium denitrificans ATCC 51888 9386448 YP_003754711.1 CDS Hden_0569 NC_014313.1 601750 603012 D PFAM: cytochrome P450; KEGG: bmr:BMI_II385 heme-thiolate monooxygenase; cytochrome P450 601750..603012 Hyphomicrobium denitrificans ATCC 51888 9386449 YP_003754712.1 CDS Hden_0570 NC_014313.1 603157 603855 D KEGG: azl:AZL_023730 transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 603157..603855 Hyphomicrobium denitrificans ATCC 51888 9386450 YP_003754713.1 CDS Hden_0571 NC_014313.1 603881 604426 D PFAM: protein of unknown function DUF2478; KEGG: rsp:RSP_6153 hypothetical protein; hypothetical protein 603881..604426 Hyphomicrobium denitrificans ATCC 51888 9386451 YP_003754714.1 CDS Hden_0572 NC_014313.1 604460 604834 R KEGG: oca:OCAR_5039 hypothetical protein; hypothetical protein complement(604460..604834) Hyphomicrobium denitrificans ATCC 51888 9386452 YP_003754715.1 CDS Hden_0573 NC_014313.1 604991 606415 R KEGG: mes:Meso_4288 hypothetical protein; hypothetical protein complement(604991..606415) Hyphomicrobium denitrificans ATCC 51888 9386453 YP_003754716.1 CDS Hden_0574 NC_014313.1 606517 606870 R KEGG: mes:Meso_4286 hypothetical protein; hypothetical protein complement(606517..606870) Hyphomicrobium denitrificans ATCC 51888 9386454 YP_003754717.1 CDS Hden_0575 NC_014313.1 606963 607508 R PFAM: Ferrous iron transporter; KEGG: mes:Meso_4285 membrane antigen; Ferrous iron transporter complement(606963..607508) Hyphomicrobium denitrificans ATCC 51888 9386455 YP_003754718.1 CDS Hden_0576 NC_014313.1 607660 609012 R TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; radical SAM protein; KEGG: rhi:NGR_c09890 HemN coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(607660..609012) Hyphomicrobium denitrificans ATCC 51888 9386456 YP_003754719.1 CDS Hden_0577 NC_014313.1 609192 609329 R hypothetical protein complement(609192..609329) Hyphomicrobium denitrificans ATCC 51888 9386457 YP_003754720.1 CDS Hden_0578 NC_014313.1 609384 609542 R KEGG: atc:AGR_L_947 hypothetical protein; hypothetical protein complement(609384..609542) Hyphomicrobium denitrificans ATCC 51888 9386458 YP_003754721.1 CDS Hden_0579 NC_014313.1 609539 609841 R KEGG: mag:amb2940 hypothetical protein; hypothetical protein complement(609539..609841) Hyphomicrobium denitrificans ATCC 51888 9386459 YP_003754722.1 CDS Hden_0580 NC_014313.1 609844 610440 R PFAM: cytochrome C oxidase subunit III; KEGG: mag:amb2941 heme/copper-type cytochrome/quinol oxidase subunit 3; cytochrome C oxidase subunit III complement(609844..610440) Hyphomicrobium denitrificans ATCC 51888 9386460 YP_003754723.1 CDS Hden_0581 NC_014313.1 610609 611061 D KEGG: oan:Oant_4386 cytochrome C class I; cytochrome C class I 610609..611061 Hyphomicrobium denitrificans ATCC 51888 9386461 YP_003754724.1 CDS Hden_0582 NC_014313.1 611075 612424 D KEGG: azl:AZL_c02070 nitric-oxide reductase, cytochrome b-containing subunit I; PFAM: cytochrome C oxidase subunit I; nitric-oxide reductase 611075..612424 Hyphomicrobium denitrificans ATCC 51888 9386462 YP_003754725.1 CDS Hden_0583 NC_014313.1 612449 613258 D PFAM: ATPase associated with various cellular activities AAA_5; CbbQ/NirQ/NorQ domain protein; KEGG: azl:AZL_c02060 nitric-oxide reductase NorQ protein; ATPase AAA 612449..613258 Hyphomicrobium denitrificans ATCC 51888 9386463 YP_003754726.1 CDS Hden_0584 NC_014313.1 613265 615172 D KEGG: azl:AZL_c02050 nitric-oxide reductase NorD protein; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A 613265..615172 Hyphomicrobium denitrificans ATCC 51888 9386464 YP_003754727.1 CDS Hden_0585 NC_014313.1 615302 615754 D KEGG: nha:Nham_1934 hypothetical protein; hypothetical protein 615302..615754 Hyphomicrobium denitrificans ATCC 51888 9386465 YP_003754728.1 CDS Hden_0586 NC_014313.1 615813 618176 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azl:AZL_a08620 iron complex outermembrane recepter protein; TonB-dependent receptor complement(615813..618176) Hyphomicrobium denitrificans ATCC 51888 9386466 YP_003754729.1 CDS Hden_0587 NC_014313.1 618277 618690 R KEGG: rba:RB13053 signal peptide; hypothetical protein complement(618277..618690) Hyphomicrobium denitrificans ATCC 51888 9386467 YP_003754730.1 CDS Hden_0588 NC_014313.1 618929 620002 R KEGG: atc:AGR_C_1196 hypothetical protein; hypothetical protein complement(618929..620002) Hyphomicrobium denitrificans ATCC 51888 9386468 YP_003754731.1 CDS Hden_0589 NC_014313.1 620294 620476 D KEGG: plu:plu3942 cystathionine beta-lyase; hypothetical protein 620294..620476 Hyphomicrobium denitrificans ATCC 51888 9386469 YP_003754732.1 CDS Hden_0590 NC_014313.1 620505 621692 D PFAM: NnrS family protein; KEGG: mes:Meso_4289 NnrS; NnrS family protein 620505..621692 Hyphomicrobium denitrificans ATCC 51888 9386470 YP_003754733.1 CDS Hden_0591 NC_014313.1 621751 623211 R TIGRFAM: nitrite reductase, copper-containing; KEGG: oca:OCAR_7249 copper-containing nitrite reductase; PFAM: multicopper oxidase type 3; nitrite reductase, copper-containing protein complement(621751..623211) Hyphomicrobium denitrificans ATCC 51888 9386471 YP_003754734.1 CDS Hden_0592 NC_014313.1 623555 624010 R PFAM: Host attachment protein; KEGG: rlt:Rleg2_0970 hypothetical protein; Host attachment protein complement(623555..624010) Hyphomicrobium denitrificans ATCC 51888 9386472 YP_003754735.1 CDS Hden_0593 NC_014313.1 624206 626098 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; response regulator receiver; histidine kinase A domain protein; KEGG: rpd:RPD_3277 ATP-binding region, ATPase-like; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS/PAC sensor hybrid histidine kinase 624206..626098 Hyphomicrobium denitrificans ATCC 51888 9386473 YP_003754736.1 CDS Hden_0594 NC_014313.1 626150 626878 R KEGG: acr:Acry_0577 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator complement(626150..626878) Hyphomicrobium denitrificans ATCC 51888 9386474 YP_003754737.1 CDS Hden_0595 NC_014313.1 627023 627715 D KEGG: met:M446_0946 Crp/FNR family transcriptional regulator; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 627023..627715 Hyphomicrobium denitrificans ATCC 51888 9386475 YP_003754738.1 CDS Hden_0596 NC_014313.1 627791 628597 R TIGRFAM: PAS sensor protein; PFAM: PAS fold-3 domain protein; PAS fold domain protein; KEGG: mei:Msip34_2466 PAS/PAC sensor protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor protein complement(627791..628597) Hyphomicrobium denitrificans ATCC 51888 9386476 YP_003754739.1 CDS Hden_0597 NC_014313.1 628857 630716 D KEGG: mei:Msip34_2465 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase, nitrate/nitrite-specific, NarQ 628857..630716 Hyphomicrobium denitrificans ATCC 51888 9386477 YP_003754740.1 CDS Hden_0598 NC_014313.1 630733 631404 D KEGG: mei:Msip34_2464 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 630733..631404 Hyphomicrobium denitrificans ATCC 51888 9386478 YP_003754741.1 CDS Hden_0599 NC_014313.1 631719 633116 D KEGG: cko:CKO_02656 coproporphyrinogen III oxidase; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 631719..633116 Hyphomicrobium denitrificans ATCC 51888 9386479 YP_003754742.1 CDS Hden_0600 NC_014313.1 633113 633640 D PFAM: protein of unknown function DUF1008; KEGG: hha:Hhal_0383 hypothetical protein; hypothetical protein 633113..633640 Hyphomicrobium denitrificans ATCC 51888 9386480 YP_003754743.1 CDS Hden_0601 NC_014313.1 633640 634329 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: hha:Hhal_0382 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 633640..634329 Hyphomicrobium denitrificans ATCC 51888 9386481 YP_003754744.1 CDS Hden_0602 NC_014313.1 634631 636223 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; KEGG: cak:Caul_1141 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; SMART: chemotaxis sensory transducer; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 634631..636223 Hyphomicrobium denitrificans ATCC 51888 9386482 YP_003754745.1 CDS Hden_0603 NC_014313.1 636290 636757 D KEGG: smd:Smed_0236 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW 636290..636757 Hyphomicrobium denitrificans ATCC 51888 9386483 YP_003754746.1 CDS Hden_0604 NC_014313.1 636837 637070 R KEGG: nwi:Nwi_2070 hypothetical protein; hypothetical protein complement(636837..637070) Hyphomicrobium denitrificans ATCC 51888 9386484 YP_003754747.1 CDS Hden_0605 NC_014313.1 637137 637382 R KEGG: nwi:Nwi_2070 hypothetical protein; hypothetical protein complement(637137..637382) Hyphomicrobium denitrificans ATCC 51888 9386485 YP_003754748.1 CDS Hden_0606 NC_014313.1 637653 638135 R TIGRFAM: cyanate lyase; KEGG: msl:Msil_0112 cyanate hydratase; PFAM: Cyanate lyase domain protein; cyanate lyase complement(637653..638135) Hyphomicrobium denitrificans ATCC 51888 9386486 YP_003754749.1 CDS Hden_0607 NC_014313.1 638207 639406 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: vei:Veis_4915 formate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase complement(638207..639406) Hyphomicrobium denitrificans ATCC 51888 9386487 YP_003754750.1 CDS Hden_0608 NC_014313.1 639669 640577 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: msl:Msil_2452 LysR family transcriptional regulator; LysR family transcriptional regulator complement(639669..640577) Hyphomicrobium denitrificans ATCC 51888 9386488 YP_003754751.1 CDS Hden_0609 NC_014313.1 640743 642218 R manually curated; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; globin; KEGG: mrd:Mrad2831_4540 fis family transcriptional regulator; SMART: ATPase AAA; Fis family transcriptional regulator complement(640743..642218) Hyphomicrobium denitrificans ATCC 51888 9386489 YP_003754752.1 CDS Hden_0610 NC_014313.1 642267 642752 D KEGG: tgr:Tgr7_1816 cupin 2, conserved barrel; hypothetical protein 642267..642752 Hyphomicrobium denitrificans ATCC 51888 9386490 YP_003754753.1 CDS Hden_0611 NC_014313.1 642778 643245 D KEGG: met:M446_1940 hypothetical protein; hypothetical protein 642778..643245 Hyphomicrobium denitrificans ATCC 51888 9386491 YP_003754754.1 CDS Hden_0612 NC_014313.1 643256 643426 D hypothetical protein 643256..643426 Hyphomicrobium denitrificans ATCC 51888 9386492 YP_003754755.1 CDS Hden_0613 NC_014313.1 643456 645285 D PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; manually curated; KEGG: bmr:BMI_I102 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; dihydroxy-acid dehydratase 643456..645285 Hyphomicrobium denitrificans ATCC 51888 9386493 YP_003754756.1 CDS Hden_0614 NC_014313.1 645317 647068 R KEGG: oca:OCAR_5762 serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; sporulation domain protein; serine-type D-Ala-D-Ala carboxypeptidase complement(645317..647068) Hyphomicrobium denitrificans ATCC 51888 9386494 YP_003754757.1 CDS Hden_0615 NC_014313.1 647402 647653 D KEGG: mgr:MGG_03391 hypothetical protein; hypothetical protein 647402..647653 Hyphomicrobium denitrificans ATCC 51888 9386495 YP_003754758.1 CDS Hden_0616 NC_014313.1 647697 648086 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: pla:Plav_2797 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 647697..648086 Hyphomicrobium denitrificans ATCC 51888 9386496 YP_003754759.1 CDS Hden_0617 NC_014313.1 648094 650544 D TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase AAA; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: azc:AZC_1595 ATPase AAA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit clpA 648094..650544 Hyphomicrobium denitrificans ATCC 51888 9386497 YP_003754760.1 CDS Hden_0618 NC_014313.1 650632 651273 R KEGG: dsh:Dshi_0026 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(650632..651273) Hyphomicrobium denitrificans ATCC 51888 9386498 YP_003754761.1 CDS Hden_0619 NC_014313.1 651349 651813 R PFAM: histidine triad (HIT) protein; KEGG: rlg:Rleg_1771 histidine triad (HIT) protein; histidine triad (HIT) protein complement(651349..651813) Hyphomicrobium denitrificans ATCC 51888 9386499 YP_003754762.1 CDS Hden_0620 NC_014313.1 651926 653098 R PFAM: protein of unknown function DUF482; KEGG: pla:Plav_2802 hypothetical protein; hypothetical protein complement(651926..653098) Hyphomicrobium denitrificans ATCC 51888 9386500 YP_003754763.1 CDS Hden_0621 NC_014313.1 653223 653972 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: xau:Xaut_3792 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(653223..653972) Hyphomicrobium denitrificans ATCC 51888 9386501 YP_003754764.1 CDS Hden_0622 NC_014313.1 653976 654437 R PFAM: endoribonuclease L-PSP; KEGG: bmr:BMI_I1176 endoribonuclease L-PSP; endoribonuclease L-PSP complement(653976..654437) Hyphomicrobium denitrificans ATCC 51888 9386502 YP_003754765.1 CDS Hden_0623 NC_014313.1 654569 655441 D PFAM: Domain of unknown function DUF1849; KEGG: bid:Bind_1791 hypothetical protein; hypothetical protein 654569..655441 Hyphomicrobium denitrificans ATCC 51888 9386503 YP_003754766.1 CDS Hden_0624 NC_014313.1 655506 655793 R KEGG: azc:AZC_1853 hypothetical protein; hypothetical protein complement(655506..655793) Hyphomicrobium denitrificans ATCC 51888 9386504 YP_003754767.1 CDS Hden_0625 NC_014313.1 655901 656335 D KEGG: mmr:Mmar10_1276 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 655901..656335 Hyphomicrobium denitrificans ATCC 51888 9386505 YP_003754768.1 CDS Hden_0626 NC_014313.1 656342 657712 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rpb:RPB_2413 response regulator PleD; SMART: GGDEF domain containing protein; response regulator receiver; response regulator receiver modulated diguanylate cyclase 656342..657712 Hyphomicrobium denitrificans ATCC 51888 9386506 YP_003754769.1 CDS Hden_0627 NC_014313.1 658279 658446 R KEGG: sjp:SJA_C1-01020 ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; 50S ribosomal protein L33 complement(658279..658446) Hyphomicrobium denitrificans ATCC 51888 9386507 YP_003754770.1 CDS Hden_0628 NC_014313.1 658523 659230 R PFAM: NUDIX hydrolase; KEGG: cak:Caul_1500 NUDIX hydrolase; NUDIX hydrolase complement(658523..659230) Hyphomicrobium denitrificans ATCC 51888 9386508 YP_003754771.1 CDS Hden_0629 NC_014313.1 659249 659719 R PFAM: protein of unknown function DUF983; KEGG: msl:Msil_3844 protein of unknown function DUF983; hypothetical protein complement(659249..659719) Hyphomicrobium denitrificans ATCC 51888 9386509 YP_003754772.1 CDS Hden_0630 NC_014313.1 659772 662075 R PFAM: ribonuclease II; RNA binding S1 domain protein; manually curated; KEGG: mno:Mnod_7411 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R complement(659772..662075) Hyphomicrobium denitrificans ATCC 51888 9386510 YP_003754773.1 CDS Hden_0631 NC_014313.1 662072 664834 R SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; TIGRFAM: DNA topoisomerase I; KEGG: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; DNA topoisomerase I complement(662072..664834) Hyphomicrobium denitrificans ATCC 51888 9386511 YP_003754774.1 CDS Hden_0632 NC_014313.1 665058 665237 D KEGG: rcu:RCOM_1781100 Nodulation protein W; nodulation protein W 665058..665237 Hyphomicrobium denitrificans ATCC 51888 9386512 YP_003754775.1 CDS Hden_0633 NC_014313.1 665271 666470 R KEGG: nha:Nham_2285 DNA processing protein DprA, TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA complement(665271..666470) Hyphomicrobium denitrificans ATCC 51888 9386513 YP_003754776.1 CDS Hden_0634 NC_014313.1 666457 667059 R PFAM: protein of unknown function DUF205; KEGG: ara:Arad_1894 glycerol-3-phosphate acyltransferase PlsY; hypothetical protein complement(666457..667059) Hyphomicrobium denitrificans ATCC 51888 9386514 YP_003754777.1 CDS Hden_0635 NC_014313.1 667094 668440 R KEGG: mno:Mnod_3311 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase; PFAM: amidohydrolase; dihydroorotase complement(667094..668440) Hyphomicrobium denitrificans ATCC 51888 9386515 YP_003754778.1 CDS Hden_0636 NC_014313.1 668440 669411 R TIGRFAM: aspartate carbamoyltransferase; KEGG: pla:Plav_2836 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate carbamoyltransferase complement(668440..669411) Hyphomicrobium denitrificans ATCC 51888 9386516 YP_003754779.1 CDS Hden_0637 NC_014313.1 669527 670027 R KEGG: rsq:Rsph17025_1879 Holliday junction resolvase YqgF; PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; Holliday junction resolvase YqgF complement(669527..670027) Hyphomicrobium denitrificans ATCC 51888 9386517 YP_003754780.1 CDS Hden_0638 NC_014313.1 670238 670525 D KEGG: oca:OCAR_5794 aspartyl/glutamyl-tRNA amidotransferase subunit C; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C 670238..670525 Hyphomicrobium denitrificans ATCC 51888 9386518 YP_003754781.1 CDS Hden_0639 NC_014313.1 670529 670942 D KEGG: mno:Mnod_0669 hypothetical protein; hypothetical protein 670529..670942 Hyphomicrobium denitrificans ATCC 51888 9386519 YP_003754782.1 CDS Hden_0640 NC_014313.1 670939 672438 D KEGG: rpt:Rpal_3517 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 670939..672438 Hyphomicrobium denitrificans ATCC 51888 9386520 YP_003754783.1 CDS Hden_0641 NC_014313.1 672442 672792 D KEGG: oca:OCAR_5798 T-protein; PFAM: chorismate mutase, type II; SMART: chorismate mutase; chorismate mutase, type II 672442..672792 Hyphomicrobium denitrificans ATCC 51888 9386521 YP_003754784.1 CDS Hden_0642 NC_014313.1 672785 673084 D KEGG: mno:Mnod_3319 hypothetical protein; hypothetical protein 672785..673084 Hyphomicrobium denitrificans ATCC 51888 9386522 YP_003754785.1 CDS Hden_0643 NC_014313.1 673139 674620 D TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; KEGG: mpo:Mpop_3262 glutamyl-tRNA(Gln) amidotransferase, B subunit; SMART: Asn/Gln amidotransferase; glutamyl-tRNA(Gln) amidotransferase subunit B 673139..674620 Hyphomicrobium denitrificans ATCC 51888 9386523 YP_003754786.1 CDS Hden_0644 NC_014313.1 674644 674781 R hypothetical protein complement(674644..674781) Hyphomicrobium denitrificans ATCC 51888 9386524 YP_003754787.1 CDS Hden_0645 NC_014313.1 674949 676346 R PFAM: cytochrome P450; KEGG: mno:Mnod_6754 cytochrome P450; cytochrome P450 complement(674949..676346) Hyphomicrobium denitrificans ATCC 51888 9386525 YP_003754788.1 CDS Hden_0646 NC_014313.1 676428 676589 R hypothetical protein complement(676428..676589) Hyphomicrobium denitrificans ATCC 51888 9386526 YP_003754789.1 CDS Hden_0647 NC_014313.1 676701 677231 R KEGG: pmr:PMI3534 hypothetical protein; hypothetical protein complement(676701..677231) Hyphomicrobium denitrificans ATCC 51888 9386527 YP_003754790.1 CDS Hden_0648 NC_014313.1 677350 677763 R KEGG: mxa:MXAN_6419 hypothetical protein; hypothetical protein complement(677350..677763) Hyphomicrobium denitrificans ATCC 51888 9386528 YP_003754791.1 CDS Hden_0649 NC_014313.1 677963 678931 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mms:mma_0551 NADPH2:quinone reductase; alcohol dehydrogenase zinc-binding domain-containing protein 677963..678931 Hyphomicrobium denitrificans ATCC 51888 9386529 YP_003754792.1 CDS Hden_0650 NC_014313.1 678940 679593 D PFAM: glutathione S-transferase domain; KEGG: xau:Xaut_3798 glutathione S-transferase domain-containing protein; glutathione S-transferase 678940..679593 Hyphomicrobium denitrificans ATCC 51888 9386530 YP_003754793.1 CDS Hden_0651 NC_014313.1 679627 679905 R KEGG: cai:Caci_7322 hypothetical protein; hypothetical protein complement(679627..679905) Hyphomicrobium denitrificans ATCC 51888 9386531 YP_003754794.1 CDS Hden_0652 NC_014313.1 680240 680587 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: pla:Plav_2849 Sel1 domain-containing protein; Sel1 domain-containing protein repeat-containing protein 680240..680587 Hyphomicrobium denitrificans ATCC 51888 9386532 YP_003754795.1 CDS Hden_0653 NC_014313.1 680631 681218 R KEGG: sma:SAV_5152 hypothetical protein; hypothetical protein complement(680631..681218) Hyphomicrobium denitrificans ATCC 51888 9386533 YP_003754796.1 CDS Hden_0654 NC_014313.1 681647 681781 R hypothetical protein complement(681647..681781) Hyphomicrobium denitrificans ATCC 51888 9386535 YP_003754797.1 CDS Hden_0655 NC_014313.1 681932 682396 R KEGG: cag:Cagg_2731 secretion protein HlyD family protein; hypothetical protein complement(681932..682396) Hyphomicrobium denitrificans ATCC 51888 9386536 YP_003754798.1 CDS Hden_0656 NC_014313.1 682393 682629 R KEGG: ago:AGOS_AEL256C AEL256Cp; hypothetical protein complement(682393..682629) Hyphomicrobium denitrificans ATCC 51888 9386537 YP_003754799.1 CDS Hden_0657 NC_014313.1 682626 683045 R KEGG: rpb:RPB_3312 hypothetical protein; hypothetical protein complement(682626..683045) Hyphomicrobium denitrificans ATCC 51888 9386538 YP_003754800.1 CDS Hden_0658 NC_014313.1 683274 684263 R KEGG: pwa:Pecwa_0674 hypothetical protein; hypothetical protein complement(683274..684263) Hyphomicrobium denitrificans ATCC 51888 9386539 YP_003754801.1 CDS Hden_0659 NC_014313.1 684260 685042 R KEGG: ava:Ava_0764 hypothetical protein; hypothetical protein complement(684260..685042) Hyphomicrobium denitrificans ATCC 51888 9386540 YP_003754802.1 CDS Hden_0660 NC_014313.1 685039 686163 R KEGG: nph:NP3638A transducer protein htr8; hypothetical protein complement(685039..686163) Hyphomicrobium denitrificans ATCC 51888 9386541 YP_003754803.1 CDS Hden_0661 NC_014313.1 686655 688853 R KEGG: smd:Smed_1346 hypothetical protein; hypothetical protein complement(686655..688853) Hyphomicrobium denitrificans ATCC 51888 9386542 YP_003754804.1 CDS Hden_0662 NC_014313.1 688925 689173 R KEGG: bfs:BF1720 hypothetical protein; hypothetical protein complement(688925..689173) Hyphomicrobium denitrificans ATCC 51888 9386543 YP_003754805.1 CDS Hden_0663 NC_014313.1 689170 689853 R KEGG: ank:AnaeK_0467 exonuclease SbcC; hypothetical protein complement(689170..689853) Hyphomicrobium denitrificans ATCC 51888 9386544 YP_003754806.1 CDS Hden_0665 NC_014313.1 690306 691160 R KEGG: xca:xccb100_1050 hypothetical protein; hypothetical protein complement(690306..691160) Hyphomicrobium denitrificans ATCC 51888 9386546 YP_003754807.1 CDS Hden_0666 NC_014313.1 691204 691926 R KEGG: dma:DMR_14610 hypothetical protein; hypothetical protein complement(691204..691926) Hyphomicrobium denitrificans ATCC 51888 9386547 YP_003754808.1 CDS Hden_0667 NC_014313.1 691923 692675 R KEGG: dma:DMR_14620 hypothetical protein; hypothetical protein complement(691923..692675) Hyphomicrobium denitrificans ATCC 51888 9386548 YP_003754809.1 CDS Hden_0668 NC_014313.1 692851 694098 R KEGG: met:M446_3983 integrase family protein; manually curated; PFAM: integrase family protein; integrase family protein complement(692851..694098) Hyphomicrobium denitrificans ATCC 51888 9386549 YP_003754810.1 CDS Hden_0669 NC_014313.1 694546 695640 D PFAM: protein of unknown function DUF344; KEGG: xau:Xaut_4684 hypothetical protein; hypothetical protein 694546..695640 Hyphomicrobium denitrificans ATCC 51888 9386550 YP_003754811.1 CDS Hden_0670 NC_014313.1 695727 696143 R KEGG: mpo:Mpop_2607 large conductance mechanosensitive channel protein; TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein complement(695727..696143) Hyphomicrobium denitrificans ATCC 51888 9386551 YP_003754812.1 CDS Hden_0671 NC_014313.1 696452 697498 D KEGG: bra:BRADO4915 threonine-phosphate decarboxylase; TIGRFAM: L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; L-threonine-O-3-phosphate decarboxylase 696452..697498 Hyphomicrobium denitrificans ATCC 51888 9386552 YP_003754813.1 CDS Hden_0672 NC_014313.1 697773 700151 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpa:RPA0765 outer membrane receptor for iron transport; TonB-dependent receptor 697773..700151 Hyphomicrobium denitrificans ATCC 51888 9386553 YP_003754814.1 CDS Hden_0673 NC_014313.1 700151 701185 D KEGG: pde:Pden_4169 sulfonate/nitrate transport system substrate-binding protein; sulfonate/nitrate transporter substrate-binding protein 700151..701185 Hyphomicrobium denitrificans ATCC 51888 9386554 YP_003754815.1 CDS Hden_0674 NC_014313.1 701192 702004 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: pde:Pden_4168 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 701192..702004 Hyphomicrobium denitrificans ATCC 51888 9386555 YP_003754816.1 CDS Hden_0675 NC_014313.1 702001 702750 D KEGG: pde:Pden_4167 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 702001..702750 Hyphomicrobium denitrificans ATCC 51888 9386556 YP_003754817.1 CDS Hden_0676 NC_014313.1 702747 703988 D PFAM: NnrS family protein; KEGG: pde:Pden_4166 NnrS family protein; NnrS family protein 702747..703988 Hyphomicrobium denitrificans ATCC 51888 9386557 YP_003754818.1 CDS Hden_0677 NC_014313.1 703985 704956 D PFAM: NnrS family protein; KEGG: msl:Msil_1524 NnrS family protein; NnrS family protein 703985..704956 Hyphomicrobium denitrificans ATCC 51888 9386558 YP_003754819.1 CDS Hden_0678 NC_014313.1 704953 705123 R hypothetical protein complement(704953..705123) Hyphomicrobium denitrificans ATCC 51888 9386559 YP_003754820.1 CDS Hden_0679 NC_014313.1 705344 706024 R PFAM: DSBA oxidoreductase; KEGG: dsh:Dshi_4063 DsbA oxidoreductase; DSBA oxidoreductase complement(705344..706024) Hyphomicrobium denitrificans ATCC 51888 9386560 YP_003754821.1 CDS Hden_0680 NC_014313.1 706107 706583 R PFAM: protein of unknown function DUF442; KEGG: abo:ABO_1944 hypothetical protein; hypothetical protein complement(706107..706583) Hyphomicrobium denitrificans ATCC 51888 9386561 YP_003754822.1 CDS Hden_0681 NC_014313.1 706603 707691 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: mag:amb0857 transporter component; hypothetical protein complement(706603..707691) Hyphomicrobium denitrificans ATCC 51888 9386562 YP_003754823.1 CDS Hden_0682 NC_014313.1 708054 708431 D KEGG: rpd:RPD_4201 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 708054..708431 Hyphomicrobium denitrificans ATCC 51888 9386563 YP_003754824.1 CDS Hden_0683 NC_014313.1 708609 709643 D KEGG: tgr:Tgr7_2207 radical SAM protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 708609..709643 Hyphomicrobium denitrificans ATCC 51888 9386564 YP_003754825.1 CDS Hden_0684 NC_014313.1 709648 710733 D KEGG: tgr:Tgr7_2205 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; geranylgeranyl reductase 709648..710733 Hyphomicrobium denitrificans ATCC 51888 9386565 YP_003754826.1 CDS Hden_0685 NC_014313.1 710755 712056 D KEGG: tkm:TK90_0644 radical SAM protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 710755..712056 Hyphomicrobium denitrificans ATCC 51888 9386566 YP_003754827.1 CDS Hden_0686 NC_014313.1 712053 713141 D PFAM: biotin/lipoate A/B protein ligase; KEGG: tgr:Tgr7_2206 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase 712053..713141 Hyphomicrobium denitrificans ATCC 51888 9386567 YP_003754828.1 CDS Hden_0687 NC_014313.1 713138 713833 D KEGG: tgr:Tgr7_0821 GMP synthase - glutamine amidotransferase domain-like protein; GMP synthase - glutamine amidotransferase domain-like protein 713138..713833 Hyphomicrobium denitrificans ATCC 51888 9386568 YP_003754829.1 CDS Hden_0688 NC_014313.1 714007 714384 D KEGG: afr:AFE_0363 hypothetical protein; hypothetical protein 714007..714384 Hyphomicrobium denitrificans ATCC 51888 9386569 YP_003754830.1 CDS Hden_0689 NC_014313.1 714410 715153 D KEGG: tkm:TK90_0632 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 714410..715153 Hyphomicrobium denitrificans ATCC 51888 9386570 YP_003754831.1 CDS Hden_0690 NC_014313.1 715200 716600 D PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: afr:AFE_2586 heterodisulfide reductase subunit B, homolog; hypothetical protein 715200..716600 Hyphomicrobium denitrificans ATCC 51888 9386571 YP_003754832.1 CDS Hden_0691 NC_014313.1 716665 717714 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: tgr:Tgr7_2214 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 716665..717714 Hyphomicrobium denitrificans ATCC 51888 9386572 YP_003754833.1 CDS Hden_0692 NC_014313.1 717719 718567 D KEGG: afr:AFE_2552 hypothetical protein; hypothetical protein 717719..718567 Hyphomicrobium denitrificans ATCC 51888 9386573 YP_003754834.1 CDS Hden_0693 NC_014313.1 718580 719362 D KEGG: tgr:Tgr7_2212 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C 718580..719362 Hyphomicrobium denitrificans ATCC 51888 9386574 YP_003754835.1 CDS Hden_0694 NC_014313.1 719411 720355 D KEGG: tgr:Tgr7_2211 CoB--CoM heterodisulfide reductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; CoB--CoM heterodisulfide reductase 719411..720355 Hyphomicrobium denitrificans ATCC 51888 9386575 YP_003754836.1 CDS Hden_0695 NC_014313.1 720361 720831 D KEGG: hypothetical protein; hypothetical protein 720361..720831 Hyphomicrobium denitrificans ATCC 51888 9386576 YP_003754837.1 CDS Hden_0696 NC_014313.1 720866 721306 D PFAM: glycine cleavage system protein H; KEGG: tgr:Tgr7_2208 glycine cleavage system protein H; glycine cleavage system protein H 720866..721306 Hyphomicrobium denitrificans ATCC 51888 9386577 YP_003754838.1 CDS Hden_0697 NC_014313.1 721328 722740 R PFAM: cytochrome P450; KEGG: met:M446_1094 cytochrome P450; cytochrome P450 complement(721328..722740) Hyphomicrobium denitrificans ATCC 51888 9386578 YP_003754839.1 CDS Hden_0698 NC_014313.1 722917 723147 R PFAM: SirA family protein; KEGG: mag:amb0858 redox protein; SirA family protein complement(722917..723147) Hyphomicrobium denitrificans ATCC 51888 9386579 YP_003754840.1 CDS Hden_0699 NC_014313.1 723296 724351 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: xau:Xaut_1528 protein of unknown function DUF395 YeeE/YedE; hypothetical protein complement(723296..724351) Hyphomicrobium denitrificans ATCC 51888 9386580 YP_003754841.1 CDS Hden_0700 NC_014313.1 724364 724738 R KEGG: xau:Xaut_1527 regulatory protein ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator complement(724364..724738) Hyphomicrobium denitrificans ATCC 51888 9386581 YP_003754842.1 CDS Hden_0701 NC_014313.1 724796 725131 R KEGG: mdi:METDI0763 regulatory protein SoxS precursor; regulatory protein SoxS complement(724796..725131) Hyphomicrobium denitrificans ATCC 51888 9386582 YP_003754843.1 CDS Hden_0702 NC_014313.1 725184 725852 R KEGG: rpt:Rpal_4962 hypothetical protein; hypothetical protein complement(725184..725852) Hyphomicrobium denitrificans ATCC 51888 9386583 YP_003754844.1 CDS Hden_0703 NC_014313.1 725830 726663 R KEGG: xau:Xaut_1522 hypothetical protein; hypothetical protein complement(725830..726663) Hyphomicrobium denitrificans ATCC 51888 9386584 YP_003754845.1 CDS Hden_0704 NC_014313.1 726815 727276 D KEGG: rpd:RPD_4255 sulfur oxidation protein SoxY; sulfur oxidation protein SoxY 726815..727276 Hyphomicrobium denitrificans ATCC 51888 9386585 YP_003754846.1 CDS Hden_0705 NC_014313.1 727314 727643 D PFAM: Sulphur oxidation protein SoxZ; KEGG: rpt:Rpal_4959 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ 727314..727643 Hyphomicrobium denitrificans ATCC 51888 9386586 YP_003754847.1 CDS Hden_0706 NC_014313.1 727686 729374 D PFAM: 5'-nucleotidase domain protein; KEGG: bja:blr3515 Mn-dependent hydrolase; 5'-nucleotidase domain-containing protein 727686..729374 Hyphomicrobium denitrificans ATCC 51888 9386587 YP_003754848.1 CDS Hden_0707 NC_014313.1 729604 730869 R PFAM: transposase mutator type; KEGG: mdi:METDI2659 transposase of IS1354, IS256 family; transposase mutator type complement(729604..730869) Hyphomicrobium denitrificans ATCC 51888 9386588 YP_003754849.1 CDS Hden_0708 NC_014313.1 731031 731869 D manually curated; KEGG: nha:Nham_3887 transposase and inactivated derivatives-like; transposase join(731031..731420,731420..731869) Hyphomicrobium denitrificans ATCC 51888 9386589 YP_003754850.1 CDS Hden_0709 NC_014313.1 731935 733170 D PFAM: transposase IS4 family protein; KEGG: mdi:METDI2654 transposase of IS1357, IS701 family; transposase IS4 family protein 731935..733170 Hyphomicrobium denitrificans ATCC 51888 9386590 YP_003754851.1 CDS Hden_0710 NC_014313.1 733428 734225 R KEGG: mdi:METDI2655 transcriptional repressor of DCM dehalogenase; TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; excisionase family DNA binding domain-containing protein complement(733428..734225) Hyphomicrobium denitrificans ATCC 51888 9386591 YP_003754852.1 CDS Hden_0711 NC_014313.1 734916 735782 D PFAM: glutathione S-transferase domain; KEGG: mdi:METDI2656 dichloromethane dehalogenase (DCM dehalogenase); glutathione S-transferase 734916..735782 Hyphomicrobium denitrificans ATCC 51888 9386592 YP_003754853.1 CDS Hden_0712 NC_014313.1 735960 736946 D KEGG: mdi:METDI2657 hypothetical protein; hypothetical protein 735960..736946 Hyphomicrobium denitrificans ATCC 51888 9386593 YP_003754854.1 CDS Hden_0713 NC_014313.1 736981 737559 D KEGG: mdi:METDI2658 hypothetical protein; hypothetical protein 736981..737559 Hyphomicrobium denitrificans ATCC 51888 9386594 YP_003754855.1 CDS Hden_0714 NC_014313.1 737670 738935 R PFAM: transposase mutator type; KEGG: mdi:METDI2659 transposase of IS1354, IS256 family; transposase mutator type complement(737670..738935) Hyphomicrobium denitrificans ATCC 51888 9386595 YP_003754856.1 CDS Hden_0715 NC_014313.1 739381 740853 D KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 739381..740853 Hyphomicrobium denitrificans ATCC 51888 9386596 YP_003754857.1 CDS Hden_0716 NC_014313.1 741108 741686 D PFAM: regulatory protein TetR; KEGG: mmb:Mmol_0057 TetR family transcriptional regulator; TetR family transcriptional regulator 741108..741686 Hyphomicrobium denitrificans ATCC 51888 9386597 YP_003754858.1 CDS Hden_0717 NC_014313.1 742421 743374 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pca:Pcar_2639 LysR family transcriptional regulator; LysR family transcriptional regulator complement(742421..743374) Hyphomicrobium denitrificans ATCC 51888 9386598 YP_003754859.1 CDS Hden_0718 NC_014313.1 744049 745296 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reu:Reut_B3588 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 744049..745296 Hyphomicrobium denitrificans ATCC 51888 9386599 YP_003754860.1 CDS Hden_0719 NC_014313.1 745472 745921 D PFAM: protein of unknown function DUF442; KEGG: reu:Reut_B3588 hypothetical protein; hypothetical protein 745472..745921 Hyphomicrobium denitrificans ATCC 51888 9386600 YP_003754861.1 CDS Hden_0720 NC_014313.1 745925 746719 D PFAM: protein of unknown function DUF81; KEGG: azc:AZC_2081 hypothetical protein; hypothetical protein 745925..746719 Hyphomicrobium denitrificans ATCC 51888 9386601 YP_003754862.1 CDS Hden_0721 NC_014313.1 746753 747814 D SMART: beta-lactamase; KEGG: bja:bll2990 hypothetical protein; beta-lactamase 746753..747814 Hyphomicrobium denitrificans ATCC 51888 9386602 YP_003754863.1 CDS Hden_0722 NC_014313.1 747902 748555 R KEGG: bja:blr6185 two-component response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator complement(747902..748555) Hyphomicrobium denitrificans ATCC 51888 9386603 YP_003754864.1 CDS Hden_0723 NC_014313.1 748816 749370 R KEGG: bid:Bind_0534 hypothetical protein; hypothetical protein complement(748816..749370) Hyphomicrobium denitrificans ATCC 51888 9386604 YP_003754865.1 CDS Hden_0725 NC_014313.1 750844 751467 R KEGG: alv:Alvin_0640 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator complement(750844..751467) Hyphomicrobium denitrificans ATCC 51888 9386606 YP_003754866.1 CDS Hden_0726 NC_014313.1 751448 753949 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; hypothetical protein; histidine kinase A domain protein; GAF domain protein; KEGG: mag:amb0896 C4-dicarboxylate transport sensor protein DctS; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein; multi-sensor signal transduction histidine kinase complement(751448..753949) Hyphomicrobium denitrificans ATCC 51888 9386607 YP_003754867.1 CDS Hden_0727 NC_014313.1 754021 755187 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: psa:PST_0144 isovaleryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(754021..755187) Hyphomicrobium denitrificans ATCC 51888 9386608 YP_003754868.1 CDS Hden_0728 NC_014313.1 755272 755574 R KEGG: mba:Mbar_A3281 hypothetical protein; hypothetical protein complement(755272..755574) Hyphomicrobium denitrificans ATCC 51888 9386609 YP_003754869.1 CDS Hden_0729 NC_014313.1 755589 755867 R KEGG: aba:acid345_2739 aspartyl/asparaginyl beta-hydroxylase; hypothetical protein complement(755589..755867) Hyphomicrobium denitrificans ATCC 51888 9386610 YP_003754870.1 CDS Hden_0730 NC_014313.1 756058 756681 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bam:Bamb_0105 (acyl-carrier-protein) phosphodiesterase; NAD(P)H dehydrogenase (quinone) complement(756058..756681) Hyphomicrobium denitrificans ATCC 51888 9386611 YP_003754871.1 CDS Hden_0731 NC_014313.1 756943 757578 D KEGG: gbe:GbCGDNIH1_0908 peroxidase; PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; peroxiredoxin-like; Peroxidase 756943..757578 Hyphomicrobium denitrificans ATCC 51888 9386612 YP_003754872.1 CDS Hden_0732 NC_014313.1 757802 759076 D PFAM: fatty acid desaturase; KEGG: lbf:LBF_2715 flavodoxin reductase; fatty acid desaturase 757802..759076 Hyphomicrobium denitrificans ATCC 51888 9386613 YP_003754873.1 CDS Hden_0733 NC_014313.1 759144 759545 D PFAM: globin; KEGG: tkm:TK90_2328 globin; globin 759144..759545 Hyphomicrobium denitrificans ATCC 51888 9386614 YP_003754874.1 CDS Hden_0734 NC_014313.1 759581 760663 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; oxidoreductase FAD-binding domain protein; KEGG: pmy:Pmen_2542 oxidoreductase FAD/NAD(P)-binding subunit; oxidoreductase FAD/NAD(P)-binding domain-containing protein 759581..760663 Hyphomicrobium denitrificans ATCC 51888 9386615 YP_003754875.1 CDS Hden_0735 NC_014313.1 760703 761209 D PFAM: ferric-uptake regulator; KEGG: mch:Mchl_0456 ferric uptake regulator, Fur family; Fur family ferric uptake regulator 760703..761209 Hyphomicrobium denitrificans ATCC 51888 9386616 YP_003754876.1 CDS Hden_0736 NC_014313.1 761299 761619 R PFAM: protein of unknown function DUF1488; KEGG: bja:bsl0168 hypothetical protein; hypothetical protein complement(761299..761619) Hyphomicrobium denitrificans ATCC 51888 9386617 YP_003754877.1 CDS Hden_0737 NC_014313.1 761641 762687 R PFAM: alpha/beta hydrolase fold; KEGG: msl:Msil_2478 hypothetical protein; alpha/beta hydrolase fold protein complement(761641..762687) Hyphomicrobium denitrificans ATCC 51888 9386618 YP_003754878.1 CDS Hden_0738 NC_014313.1 762982 763206 D hypothetical protein 762982..763206 Hyphomicrobium denitrificans ATCC 51888 9386619 YP_003754879.1 CDS Hden_0739 NC_014313.1 763263 763907 D KEGG: mms:mma_2479 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; flavin reductase 763263..763907 Hyphomicrobium denitrificans ATCC 51888 9386620 YP_003754880.1 CDS Hden_0740 NC_014313.1 764123 765016 D SMART: beta-lactamase; KEGG: azc:AZC_2082 beta-lactamase-like protein; beta-lactamase 764123..765016 Hyphomicrobium denitrificans ATCC 51888 9386621 YP_003754881.1 CDS Hden_0741 NC_014313.1 765132 766274 R KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG, PFAM: Di-haem cytochrome C peroxidase; cytochrome-c peroxidase complement(765132..766274) Hyphomicrobium denitrificans ATCC 51888 9386622 YP_003754882.1 CDS Hden_0742 NC_014313.1 766293 766982 R PFAM: electron transporter SCO1/SenC; KEGG: mca:MCA0318 SCO1/SenC family protein/methylamine utilization protein MauG; electron transporter SCO1/SenC complement(766293..766982) Hyphomicrobium denitrificans ATCC 51888 9386623 YP_003754883.1 CDS Hden_0743 NC_014313.1 766986 768272 R KEGG: mca:MCA0317 selenium-binding protein; selenium-binding protein complement(766986..768272) Hyphomicrobium denitrificans ATCC 51888 9386624 YP_003754884.1 CDS Hden_0745 NC_014313.1 768894 769241 R KEGG: ppu:PP_2422 alkylhydroperoxidase-like protein; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein complement(768894..769241) Hyphomicrobium denitrificans ATCC 51888 9386626 YP_003754885.1 CDS Hden_0746 NC_014313.1 770017 771906 D PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mes:Meso_2063 TonB-dependent receptor; TonB-dependent receptor plug 770017..771906 Hyphomicrobium denitrificans ATCC 51888 9386627 YP_003754886.1 CDS Hden_0747 NC_014313.1 771983 772612 D KEGG: azl:AZL_007810 hypothetical protein; hypothetical protein 771983..772612 Hyphomicrobium denitrificans ATCC 51888 9386628 YP_003754887.1 CDS Hden_0748 NC_014313.1 772575 773540 D TIGRFAM: TonB family protein; KEGG: rlg:Rleg_3266 TonB family protein; TonB family protein 772575..773540 Hyphomicrobium denitrificans ATCC 51888 9386629 YP_003754888.1 CDS Hden_0749 NC_014313.1 773617 774174 D KEGG: rlt:Rleg2_2272 hypothetical protein; hypothetical protein 773617..774174 Hyphomicrobium denitrificans ATCC 51888 9386630 YP_003754889.1 CDS Hden_0750 NC_014313.1 774209 774874 R PFAM: protein of unknown function DUF105; KEGG: oan:Oant_4452 hypothetical protein; hypothetical protein complement(774209..774874) Hyphomicrobium denitrificans ATCC 51888 9386631 YP_003754890.1 CDS Hden_0751 NC_014313.1 774955 776037 R KEGG: cak:Caul_0473 DNA-directed DNA polymerase; PFAM: UMUC domain protein DNA-repair protein; DNA-directed DNA polymerase complement(774955..776037) Hyphomicrobium denitrificans ATCC 51888 9386632 YP_003754891.1 CDS Hden_0752 NC_014313.1 776230 776820 D KEGG: asa:ASA_2896 hypothetical protein; hypothetical protein 776230..776820 Hyphomicrobium denitrificans ATCC 51888 9386633 YP_003754892.1 CDS Hden_0753 NC_014313.1 776917 777561 D KEGG: sjp:SJA_C1-11420 hypothetical protein; hypothetical protein 776917..777561 Hyphomicrobium denitrificans ATCC 51888 9386634 YP_003754893.1 CDS Hden_0754 NC_014313.1 777527 779020 D KEGG: sal:Sala_2779 hypothetical protein; hypothetical protein 777527..779020 Hyphomicrobium denitrificans ATCC 51888 9386635 YP_003754894.1 CDS Hden_0755 NC_014313.1 779017 782364 D TIGRFAM: DNA polymerase III subunit alpha; KEGG: xau:Xaut_3468 DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; nucleic acid binding OB-fold tRNA/helicase-type; PHP domain protein; DNA polymerase III subunit alpha 779017..782364 Hyphomicrobium denitrificans ATCC 51888 9386636 YP_003754895.1 CDS Hden_0756 NC_014313.1 782537 783550 D KEGG: azo:azo1336 sulfate transporter substrate-binding protein; TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein 782537..783550 Hyphomicrobium denitrificans ATCC 51888 9386637 YP_003754896.1 CDS Hden_0757 NC_014313.1 783609 784592 D KEGG: msl:Msil_2419 serine O-acetyltransferase; serine O-acetyltransferase 783609..784592 Hyphomicrobium denitrificans ATCC 51888 9386638 YP_003754897.1 CDS Hden_0758 NC_014313.1 784685 785596 D KEGG: bid:Bind_1233 hypothetical protein; hypothetical protein 784685..785596 Hyphomicrobium denitrificans ATCC 51888 9386639 YP_003754898.1 CDS Hden_0759 NC_014313.1 785583 787832 D KEGG: bxe:Bxe_B1552 cysteine desulphurases, SufS; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SufS subfamily cysteine desulfurase 785583..787832 Hyphomicrobium denitrificans ATCC 51888 9386640 YP_003754899.1 CDS Hden_0760 NC_014313.1 788039 788326 D KEGG: isc:IscW_ISCW004815 histidyl-tRNA synthetase; hypothetical protein 788039..788326 Hyphomicrobium denitrificans ATCC 51888 9386641 YP_003754900.1 CDS Hden_0761 NC_014313.1 788438 789817 R KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein complement(788438..789817) Hyphomicrobium denitrificans ATCC 51888 9386642 YP_003754901.1 CDS Hden_0762 NC_014313.1 790295 791005 R KEGG: eba:ebA2148 chemotaxis response regulator; PFAM: CheB methylesterase; chemotaxis protein CheB complement(790295..791005) Hyphomicrobium denitrificans ATCC 51888 9386643 YP_003754902.1 CDS Hden_0763 NC_014313.1 791082 794180 R KEGG: bid:Bind_3835 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM: HWE histidine kinase; MCP methyltransferase CheR-type; hypothetical protein; CheB methylesterase; SMART: MCP methyltransferase CheR-type; PAC repeat-containing protein; PAS domain containing protein; MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor complement(791082..794180) Hyphomicrobium denitrificans ATCC 51888 9386644 YP_003754903.1 CDS Hden_0764 NC_014313.1 794245 794976 R SMART: cyclic nucleotide-binding; KEGG: met:M446_1834 cyclic nucleotide-binding protein; Crp/Fnr family transcriptional regulator complement(794245..794976) Hyphomicrobium denitrificans ATCC 51888 9386645 YP_003754904.1 CDS Hden_0765 NC_014313.1 795125 795529 D KEGG: swi:Swit_5289 hypothetical protein; hypothetical protein 795125..795529 Hyphomicrobium denitrificans ATCC 51888 9386646 YP_003754905.1 CDS Hden_0766 NC_014313.1 796698 797594 D KEGG: pfl:PFL_2576 hypothetical protein; hypothetical protein 796698..797594 Hyphomicrobium denitrificans ATCC 51888 9386647 YP_003754906.1 CDS Hden_0767 NC_014313.1 797605 797766 D KEGG: rsk:RSKD131_1931 hypothetical protein; hypothetical protein 797605..797766 Hyphomicrobium denitrificans ATCC 51888 9386648 YP_003754907.1 CDS Hden_0768 NC_014313.1 797843 798103 R KEGG: spe:Spro_1278 cell envelope integrity inner membrane protein TolA; hypothetical protein complement(797843..798103) Hyphomicrobium denitrificans ATCC 51888 9386649 YP_003754908.1 CDS Hden_0769 NC_014313.1 798431 798739 R KEGG: swi:Swit_5230 hypothetical protein; hypothetical protein complement(798431..798739) Hyphomicrobium denitrificans ATCC 51888 9386650 YP_003754909.1 CDS Hden_0770 NC_014313.1 799118 801673 D KEGG: rle:RL3714 phytochrome/sensor histidine kinase; PFAM: HWE histidine kinase; GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; response regulator receiver; SMART: response regulator receiver; GAF domain protein; PAS/PAC sensor protein 799118..801673 Hyphomicrobium denitrificans ATCC 51888 9386651 YP_003754910.1 CDS Hden_0771 NC_014313.1 801714 802076 R PFAM: nuclear transport factor 2; KEGG: mrd:Mrad2831_5935 signal peptide protein; nuclear transport factor 2 complement(801714..802076) Hyphomicrobium denitrificans ATCC 51888 9386652 YP_003754911.1 CDS Hden_0772 NC_014313.1 802171 802848 D PFAM: regulatory protein TetR; KEGG: mch:Mchl_1454 TetR family transcriptional regulator; TetR family transcriptional regulator 802171..802848 Hyphomicrobium denitrificans ATCC 51888 9386653 YP_003754912.1 CDS Hden_0773 NC_014313.1 802885 803277 R PFAM: endoribonuclease L-PSP; KEGG: rer:RER_29590 hypothetical protein; endoribonuclease L-PSP complement(802885..803277) Hyphomicrobium denitrificans ATCC 51888 9386654 YP_003754913.1 CDS Hden_0774 NC_014313.1 803295 804656 R PFAM: FAD dependent oxidoreductase; KEGG: sil:SPOA0380 hypothetical protein; FAD dependent oxidoreductase complement(803295..804656) Hyphomicrobium denitrificans ATCC 51888 9386655 YP_003754914.1 CDS Hden_0775 NC_014313.1 804784 806181 D TIGRFAM: glutamine synthetaseII; KEGG: mlo:mlr6210 glutamine synthetase III; PFAM: glutamine synthetase; glutamine synthetaseII 804784..806181 Hyphomicrobium denitrificans ATCC 51888 9386656 YP_003754915.1 CDS Hden_0776 NC_014313.1 806211 807110 D PFAM: glutamine amidotransferase class-II; KEGG: mch:Mchl_1938 glutamine amidotransferase class-II; glutamine amidotransferase class-II 806211..807110 Hyphomicrobium denitrificans ATCC 51888 9386657 YP_003754916.1 CDS Hden_0777 NC_014313.1 807110 807799 D PFAM: glutamate synthase subunit alpha domain protein; KEGG: mch:Mchl_1939 glutamate synthase subunit alpha domain protein; glutamate synthase subunit alpha domain-containing protein 807110..807799 Hyphomicrobium denitrificans ATCC 51888 9386658 YP_003754917.1 CDS Hden_0778 NC_014313.1 807799 809130 D PFAM: ferredoxin-dependent glutamate synthase; KEGG: mei:Msip34_2421 ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase 807799..809130 Hyphomicrobium denitrificans ATCC 51888 9386659 YP_003754918.1 CDS Hden_0779 NC_014313.1 809197 809853 R KEGG: tgr:Tgr7_1702 transcriptional regulator, XRE family; PFAM: hypothetical protein; Cupin 2 conserved barrel domain protein; SMART: hypothetical protein; XRE family transcriptional regulator complement(809197..809853) Hyphomicrobium denitrificans ATCC 51888 9386660 YP_003754919.1 CDS Hden_0780 NC_014313.1 810090 811844 D PFAM: amino acid permease-associated region; KEGG: smd:Smed_3317 amino acid permease-associated region; amino acid permease-associated protein 810090..811844 Hyphomicrobium denitrificans ATCC 51888 9386661 YP_003754920.1 CDS Hden_0781 NC_014313.1 812201 812941 R PFAM: extracellular solute-binding protein family 3; KEGG: msl:Msil_3735 extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(812201..812941) Hyphomicrobium denitrificans ATCC 51888 9386662 YP_003754921.1 CDS Hden_0782 NC_014313.1 812991 813407 R KEGG: msl:Msil_3734 hypothetical protein; hypothetical protein complement(812991..813407) Hyphomicrobium denitrificans ATCC 51888 9386663 YP_003754922.1 CDS Hden_0783 NC_014313.1 813483 815162 R KEGG: azo:azo3865 quinoprotein ethanol dehydrogenase; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; PQQ-dependent enzyme-like protein complement(813483..815162) Hyphomicrobium denitrificans ATCC 51888 9386664 YP_003754923.1 CDS Hden_0784 NC_014313.1 815527 816492 D KEGG: bid:Bind_0121 pyruvate dehydrogenase (acetyl-transferring); PFAM: dehydrogenase E1 component; pyruvate dehydrogenase 815527..816492 Hyphomicrobium denitrificans ATCC 51888 9386665 YP_003754924.1 CDS Hden_0785 NC_014313.1 816505 817521 D KEGG: bid:Bind_0120 transketolase; PFAM: transketolase; transketolase; SMART: transketolase; transketolase 816505..817521 Hyphomicrobium denitrificans ATCC 51888 9386666 YP_003754925.1 CDS Hden_0786 NC_014313.1 817518 818645 D PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; KEGG: gdj:Gdia_3501 branched-chain alpha-keto acid dehydrogenase subunit E2; alpha/beta hydrolase 817518..818645 Hyphomicrobium denitrificans ATCC 51888 9386667 YP_003754926.1 CDS Hden_0787 NC_014313.1 818724 820661 R KEGG: xau:Xaut_4046 fis family GAF modulated sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: ATPase AAA; Fis family GAF modulated sigma-54 specific transcriptional regulator complement(818724..820661) Hyphomicrobium denitrificans ATCC 51888 9386668 YP_003754927.1 CDS Hden_0788 NC_014313.1 820835 821608 R PFAM: thiazole biosynthesis protein; KEGG: gdj:Gdia_0011 thiazole synthase; thiazole biosynthesis protein complement(820835..821608) Hyphomicrobium denitrificans ATCC 51888 9386669 YP_003754928.1 CDS Hden_0789 NC_014313.1 821612 821809 R KEGG: rde:RD1_0748 thiamine biosynthesis protein ThiS, TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS complement(821612..821809) Hyphomicrobium denitrificans ATCC 51888 9386670 YP_003754929.1 CDS Hden_0790 NC_014313.1 821834 822037 R KEGG: cbr:CBG21404 Hypothetical protein CBG21404; hypothetical protein complement(821834..822037) Hyphomicrobium denitrificans ATCC 51888 9386671 YP_003754930.1 CDS Hden_0791 NC_014313.1 822055 823533 R manually curated; TIGRFAM: dihydrolipoamide dehydrogenase; KEGG: mpo:Mpop_2913 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase complement(822055..823533) Hyphomicrobium denitrificans ATCC 51888 9386672 YP_003754931.1 CDS Hden_0792 NC_014313.1 823883 825259 R KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein complement(823883..825259) Hyphomicrobium denitrificans ATCC 51888 9386673 YP_003754932.1 CDS Hden_0793 NC_014313.1 825429 825623 D KEGG: dol:Dole_1776 histidine kinase; hypothetical protein 825429..825623 Hyphomicrobium denitrificans ATCC 51888 9386674 YP_003754933.1 CDS Hden_0794 NC_014313.1 826053 827984 D KEGG: oca:OCAR_7033 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 826053..827984 Hyphomicrobium denitrificans ATCC 51888 9386675 YP_003754934.1 CDS Hden_0795 NC_014313.1 828043 828483 R PFAM: cytochrome C class I; KEGG: mpt:Mpe_A1589 hypothetical protein; cytochrome C class I complement(828043..828483) Hyphomicrobium denitrificans ATCC 51888 9386676 YP_003754935.1 CDS Hden_0796 NC_014313.1 828569 830302 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: mpt:Mpe_A1591 quinoprotein ethanol dehydrogenase precursor; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase complement(828569..830302) Hyphomicrobium denitrificans ATCC 51888 9386677 YP_003754936.1 CDS Hden_0797 NC_014313.1 830636 831349 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sal:Sala_0085 oxidoreductase; short-chain dehydrogenase/reductase SDR 830636..831349 Hyphomicrobium denitrificans ATCC 51888 9386678 YP_003754937.1 CDS Hden_0798 NC_014313.1 831475 834660 R KEGG: rlg:Rleg_2200 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(831475..834660) Hyphomicrobium denitrificans ATCC 51888 9386679 YP_003754938.1 CDS Hden_0799 NC_014313.1 834669 835880 R KEGG: rlt:Rleg2_1990 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(834669..835880) Hyphomicrobium denitrificans ATCC 51888 9386680 YP_003754939.1 CDS Hden_0800 NC_014313.1 836164 836766 D PFAM: regulatory protein TetR; KEGG: ara:Arad_3404 transcriptional regulator protein; TetR family transcriptional regulator 836164..836766 Hyphomicrobium denitrificans ATCC 51888 9386681 YP_003754940.1 CDS Hden_0802 NC_014313.1 837510 838757 R PFAM: patatin; KEGG: mlo:mlr3635 hypothetical protein; patatin complement(837510..838757) Hyphomicrobium denitrificans ATCC 51888 9386683 YP_003754941.1 CDS Hden_0803 NC_014313.1 838890 839756 D KEGG: msl:Msil_0811 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; 3-hydroxybutyrate dehydrogenase 838890..839756 Hyphomicrobium denitrificans ATCC 51888 9386684 YP_003754942.1 CDS Hden_0804 NC_014313.1 839857 840573 D KEGG: mno:Mnod_4592 acetoacetate decarboxylase; PFAM: acetoacetate decarboxylase; acetoacetate decarboxylase 839857..840573 Hyphomicrobium denitrificans ATCC 51888 9386685 YP_003754943.1 CDS Hden_0805 NC_014313.1 840643 841074 R manually curated; KEGG: met:M446_1940 hypothetical protein; hypothetical protein complement(840643..841074) Hyphomicrobium denitrificans ATCC 51888 9386686 YP_003754944.1 CDS Hden_0806 NC_014313.1 841346 841888 R KEGG: aav:Aave_2157 TetR family transcriptional regulator; manually curated; PFAM: regulatory protein TetR; TetR family transcriptional regulator complement(841346..841888) Hyphomicrobium denitrificans ATCC 51888 9386687 YP_003754945.1 CDS Hden_0807 NC_014313.1 841972 843492 D PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2158 major facilitator superfamily transporter; major facilitator superfamily protein 841972..843492 Hyphomicrobium denitrificans ATCC 51888 9386688 YP_003754946.1 CDS Hden_0808 NC_014313.1 843658 844782 R KEGG: oca:OCAR_6755 ribonucleotide-diphosphate reductase subunit beta; PFAM: ribonucleotide reductase; ribonucleoside-diphosphate reductase complement(843658..844782) Hyphomicrobium denitrificans ATCC 51888 9386689 YP_003754947.1 CDS Hden_0809 NC_014313.1 844811 847681 R KEGG: nwi:Nwi_2888 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein; ATP-cone domain protein; ribonucleoside-diphosphate reductase subunit alpha complement(844811..847681) Hyphomicrobium denitrificans ATCC 51888 9386690 YP_003754948.1 CDS Hden_0810 NC_014313.1 848093 849280 R TIGRFAM: 2-methylcitrate synthase/citrate synthase II; KEGG: pde:Pden_1347 methylcitrate synthase; PFAM: citrate synthase; 2-methylcitrate synthase/citrate synthase II complement(848093..849280) Hyphomicrobium denitrificans ATCC 51888 9386691 YP_003754949.1 CDS Hden_0811 NC_014313.1 849633 850616 R SMART: beta-lactamase; KEGG: bja:bll4367 hypothetical protein; beta-lactamase complement(849633..850616) Hyphomicrobium denitrificans ATCC 51888 9386692 YP_003754950.1 CDS Hden_0812 NC_014313.1 850735 851622 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bur:Bcep18194_B2817 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 850735..851622 Hyphomicrobium denitrificans ATCC 51888 9386693 YP_003754951.1 CDS Hden_0813 NC_014313.1 851926 852411 R KEGG: mfa:Mfla_0310 signal peptide protein; signal peptide protein complement(851926..852411) Hyphomicrobium denitrificans ATCC 51888 9386694 YP_003754952.1 CDS Hden_0814 NC_014313.1 852550 853197 R KEGG: mpo:Mpop_3828 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator complement(852550..853197) Hyphomicrobium denitrificans ATCC 51888 9386695 YP_003754953.1 CDS Hden_0815 NC_014313.1 853200 854564 R KEGG: mpo:Mpop_3827 integral membrane sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase complement(853200..854564) Hyphomicrobium denitrificans ATCC 51888 9386696 YP_003754954.1 CDS Hden_0816 NC_014313.1 854827 855321 D KEGG: mch:Mchl_0100 hypothetical protein; hypothetical protein 854827..855321 Hyphomicrobium denitrificans ATCC 51888 9386697 YP_003754955.1 CDS Hden_0817 NC_014313.1 855577 856632 D PFAM: choloylglycine hydrolase; KEGG: gdj:Gdia_2282 choloylglycine hydrolase; choloylglycine hydrolase 855577..856632 Hyphomicrobium denitrificans ATCC 51888 9386698 YP_003754956.1 CDS Hden_0818 NC_014313.1 856870 858330 R KEGG: azl:AZL_009970 methyl-accepting chemotaxis protein; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(856870..858330) Hyphomicrobium denitrificans ATCC 51888 9386699 YP_003754957.1 CDS Hden_0819 NC_014313.1 858801 859778 R PFAM: phosphate transporter; KEGG: gme:Gmet_3131 phosphate transporter; phosphate transporter complement(858801..859778) Hyphomicrobium denitrificans ATCC 51888 9386700 YP_003754958.1 CDS Hden_0820 NC_014313.1 859781 860425 R KEGG: mpt:Mpe_A3016 hypothetical protein; phosphate transport regulator-like protein complement(859781..860425) Hyphomicrobium denitrificans ATCC 51888 9386701 YP_003754959.1 CDS Hden_0821 NC_014313.1 860826 860978 D hypothetical protein 860826..860978 Hyphomicrobium denitrificans ATCC 51888 9386702 YP_003754960.1 CDS Hden_0822 NC_014313.1 861493 862752 D PFAM: Ppx/GppA phosphatase; KEGG: bcs:BCAN_B0683 Ppx/GppA phosphatase; Ppx/GppA phosphatase 861493..862752 Hyphomicrobium denitrificans ATCC 51888 9386704 YP_003754961.1 CDS Hden_0823 NC_014313.1 862749 863477 D PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pla:Plav_1167 ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ 862749..863477 Hyphomicrobium denitrificans ATCC 51888 9386705 YP_003754962.1 CDS Hden_0824 NC_014313.1 863465 863836 R KEGG: cai:Caci_3101 peptidase M1 membrane alanine aminopeptidase; hypothetical protein complement(863465..863836) Hyphomicrobium denitrificans ATCC 51888 9386706 YP_003754963.1 CDS Hden_0825 NC_014313.1 864059 865570 D SMART: CBS domain containing protein; TIGRFAM: inosine-5'-monophosphate dehydrogenase; KEGG: azc:AZC_4333 inosine-5'-monophosphate dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; CBS domain containing protein; inosine-5'-monophosphate dehydrogenase 864059..865570 Hyphomicrobium denitrificans ATCC 51888 9386707 YP_003754964.1 CDS Hden_0826 NC_014313.1 865607 866029 D PFAM: protein of unknown function DUF1123; KEGG: rpd:RPD_2267 hypothetical protein; hypothetical protein 865607..866029 Hyphomicrobium denitrificans ATCC 51888 9386708 YP_003754965.1 CDS Hden_0827 NC_014313.1 866041 867336 D PFAM: Fmu (Sun) domain protein; KEGG: mlo:mlr6944 SUN-family protein; Fmu (Sun) domain-containing protein 866041..867336 Hyphomicrobium denitrificans ATCC 51888 9386709 YP_003754966.1 CDS Hden_0828 NC_014313.1 867641 868228 D KEGG: mbn:Mboo_2041 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein SET 867641..868228 Hyphomicrobium denitrificans ATCC 51888 9386710 YP_003754967.1 CDS Hden_0829 NC_014313.1 868240 868638 R KEGG: hau:Haur_1893 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein SET complement(868240..868638) Hyphomicrobium denitrificans ATCC 51888 9386711 YP_003754968.1 CDS Hden_0830 NC_014313.1 868709 869158 D PFAM: TspO/MBR family protein; KEGG: bpy:Bphyt_6800 TspO and MBR like protein; TspO and MBR like protein 868709..869158 Hyphomicrobium denitrificans ATCC 51888 9386712 YP_003754969.1 CDS Hden_0831 NC_014313.1 869286 870833 D KEGG: azc:AZC_3705 GMP synthase; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; tRNA methyl transferase-like; GMP synthase, large subunit 869286..870833 Hyphomicrobium denitrificans ATCC 51888 9386713 YP_003754970.1 CDS Hden_0832 NC_014313.1 870987 871406 D KEGG: gau:GAU_1342 hypothetical protein; hypothetical protein 870987..871406 Hyphomicrobium denitrificans ATCC 51888 9386714 YP_003754971.1 CDS Hden_0833 NC_014313.1 871533 872099 R PFAM: GCN5-related N-acetyltransferase; KEGG: rce:RC1_3973 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase complement(871533..872099) Hyphomicrobium denitrificans ATCC 51888 9386715 YP_003754972.1 CDS Hden_0834 NC_014313.1 872223 873293 D PFAM: Uncharacterised protein family UPF0324; KEGG: xau:Xaut_2660 hypothetical protein; hypothetical protein 872223..873293 Hyphomicrobium denitrificans ATCC 51888 9386716 YP_003754973.1 CDS Hden_0835 NC_014313.1 873313 874227 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: oca:OCAR_7550 transcriptional regulator of LysR family; LysR family transcriptional regulator 873313..874227 Hyphomicrobium denitrificans ATCC 51888 9386717 YP_003754974.1 CDS Hden_0836 NC_014313.1 874235 874963 R TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; KEGG: oca:OCAR_5974 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(874235..874963) Hyphomicrobium denitrificans ATCC 51888 9386718 YP_003754975.1 CDS Hden_0837 NC_014313.1 874967 876307 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: mno:Mnod_6042 acetyl-CoA carboxylase, biotin carboxylase; SMART: biotin carboxylase domain protein; acetyl-CoA carboxylase, biotin carboxylase complement(874967..876307) Hyphomicrobium denitrificans ATCC 51888 9386719 YP_003754976.1 CDS Hden_0838 NC_014313.1 876351 876836 R KEGG: bbt:BBta_4215 biotin carboxyl carrier protein; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(876351..876836) Hyphomicrobium denitrificans ATCC 51888 9386720 YP_003754977.1 CDS Hden_0839 NC_014313.1 876902 877351 R TIGRFAM: 3-dehydroquinate dehydratase, type II; KEGG: rce:RC1_0930 3-dehydroquinate dehydratase; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase, type II complement(876902..877351) Hyphomicrobium denitrificans ATCC 51888 9386721 YP_003754978.1 CDS Hden_0840 NC_014313.1 877518 878420 R PFAM: DSBA oxidoreductase; KEGG: bra:BRADO3507 outer membrane protein; DSBA oxidoreductase complement(877518..878420) Hyphomicrobium denitrificans ATCC 51888 9386722 YP_003754979.1 CDS Hden_0841 NC_014313.1 878417 879823 R PFAM: peptidase M48 Ste24p; Tetratricopeptide TPR_2 repeat protein; KEGG: bja:bll4295 hypothetical protein; peptidase M48 Ste24p complement(878417..879823) Hyphomicrobium denitrificans ATCC 51888 9386723 YP_003754980.1 CDS Hden_0842 NC_014313.1 880044 883121 R KEGG: azc:AZC_3627 ribonuclease E and G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/ribonuclease E/G; ribonuclease, Rne/Rng family complement(880044..883121) Hyphomicrobium denitrificans ATCC 51888 9386724 YP_003754981.1 CDS Hden_0843 NC_014313.1 883899 885161 D KEGG: rpe:RPE_2978 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 883899..885161 Hyphomicrobium denitrificans ATCC 51888 9386725 YP_003754982.1 CDS Hden_0844 NC_014313.1 885309 887894 D TIGRFAM: penicillin-binding protein, 1A family; KEGG: azc:AZC_3625 penicillin-binding protein 1A precursor; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family 885309..887894 Hyphomicrobium denitrificans ATCC 51888 9386726 YP_003754983.1 CDS Hden_0845 NC_014313.1 888016 889150 D manually curated; KEGG: bpm:BURPS1710b_3602 hypothetical protein; hypothetical protein join(888016..888084,888086..889150) Hyphomicrobium denitrificans ATCC 51888 9386727 YP_003754984.1 CDS Hden_0846 NC_014313.1 889258 889647 R PFAM: 4-oxalocrotonate tautomerase; KEGG: apt:APA01_21570 malonate semialdehyde decarboxylase; 4-oxalocrotonate tautomerase complement(889258..889647) Hyphomicrobium denitrificans ATCC 51888 9386728 YP_003754985.1 CDS Hden_0847 NC_014313.1 889795 890103 R KEGG: gyc:GYMC61_3110 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit; hypothetical protein complement(889795..890103) Hyphomicrobium denitrificans ATCC 51888 9386729 YP_003754986.1 CDS Hden_0848 NC_014313.1 890311 891207 D KEGG: avi:Avi_0413 SAM dependent methyltransferase; SAM dependent methyltransferase 890311..891207 Hyphomicrobium denitrificans ATCC 51888 9386730 YP_003754987.1 CDS Hden_0849 NC_014313.1 891204 892013 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tRNA/rRNA methyltransferase SpoU; tRNA/rRNA methyltransferase SpoU 891204..892013 Hyphomicrobium denitrificans ATCC 51888 9386731 YP_003754988.1 CDS Hden_0850 NC_014313.1 892018 892956 D PFAM: ribosomal L11 methyltransferase; KEGG: hoh:Hoch_0805 histone-arginine N-methyltransferase; ribosomal L11 methyltransferase 892018..892956 Hyphomicrobium denitrificans ATCC 51888 9386732 YP_003754989.1 CDS Hden_0851 NC_014313.1 893024 893617 D PFAM: NnrUfamily protein; KEGG: alv:Alvin_3109 NnrUfamily protein; NnrU family protein 893024..893617 Hyphomicrobium denitrificans ATCC 51888 9386733 YP_003754990.1 CDS Hden_0852 NC_014313.1 893627 894253 R KEGG: psb:Psyr_3507 hypothetical protein; hypothetical protein complement(893627..894253) Hyphomicrobium denitrificans ATCC 51888 9386734 YP_003754991.1 CDS Hden_0853 NC_014313.1 894250 895434 R KEGG: azo:azo0747 hypothetical protein; hypothetical protein complement(894250..895434) Hyphomicrobium denitrificans ATCC 51888 9386735 YP_003754992.1 CDS Hden_0854 NC_014313.1 895557 897224 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bbt:BBta_3881 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(895557..897224) Hyphomicrobium denitrificans ATCC 51888 9386736 YP_003754993.1 CDS Hden_0855 NC_014313.1 897571 898452 D TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; KEGG: bbt:BBta_3771 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 897571..898452 Hyphomicrobium denitrificans ATCC 51888 9386737 YP_003754994.1 CDS Hden_0856 NC_014313.1 898615 899409 D PFAM: protein of unknown function DUF2133; KEGG: rpe:RPE_3347 hypothetical protein; hypothetical protein 898615..899409 Hyphomicrobium denitrificans ATCC 51888 9386738 YP_003754995.1 CDS Hden_0857 NC_014313.1 899440 900789 D PFAM: pyrrolo-quinoline quinone; KEGG: pla:Plav_3493 pyrrolo-quinoline quinone; pyrrolo-quinoline quinone 899440..900789 Hyphomicrobium denitrificans ATCC 51888 9386739 YP_003754996.1 CDS Hden_0858 NC_014313.1 900900 902282 D KEGG: rpt:Rpal_3505 GTP-binding protein EngA; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; ribosome-associated GTPase EngA 900900..902282 Hyphomicrobium denitrificans ATCC 51888 9386740 YP_003754997.1 CDS Hden_0859 NC_014313.1 902406 902666 D KEGG: mpo:Mpop_3271 conserved hypothetical protein; exported protein; hypothetical protein 902406..902666 Hyphomicrobium denitrificans ATCC 51888 9386741 YP_003754998.1 CDS Hden_0860 NC_014313.1 902849 903295 D PFAM: DNA polymerase III chi subunit HolC; KEGG: mch:Mchl_5119 DNA polymerase III chi subunit HolC; DNA polymerase III chi subunit HolC 902849..903295 Hyphomicrobium denitrificans ATCC 51888 9386742 YP_003754999.1 CDS Hden_0861 NC_014313.1 903345 904190 D PFAM: protein of unknown function DUF519; KEGG: bja:blr7467 hypothetical protein; hypothetical protein 903345..904190 Hyphomicrobium denitrificans ATCC 51888 9386743 YP_003755000.1 CDS Hden_0862 NC_014313.1 904434 904649 D KEGG: bid:Bind_0662 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 904434..904649 Hyphomicrobium denitrificans ATCC 51888 9386744 YP_003755001.1 CDS Hden_0863 NC_014313.1 905010 905270 D KEGG: rcu:RCOM_1781100 Nodulation protein W; hypothetical protein 905010..905270 Hyphomicrobium denitrificans ATCC 51888 9386745 YP_003755002.1 CDS Hden_0864 NC_014313.1 905353 905640 R KEGG: oan:Oant_1647 hypothetical protein; hypothetical protein complement(905353..905640) Hyphomicrobium denitrificans ATCC 51888 9386746 YP_003755003.1 CDS Hden_0865 NC_014313.1 905923 906234 D KEGG: tps:THAPS_10992 hypothetical protein; hypothetical protein 905923..906234 Hyphomicrobium denitrificans ATCC 51888 9386747 YP_003755004.1 CDS Hden_0866 NC_014313.1 906412 907197 D KEGG: dan:Dana_GF13208 GF13208 gene product from transcript GF13208-RA; hypothetical protein 906412..907197 Hyphomicrobium denitrificans ATCC 51888 9386748 YP_003755005.1 CDS Hden_0867 NC_014313.1 907318 907686 R KEGG: mno:Mnod_1693 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(907318..907686) Hyphomicrobium denitrificans ATCC 51888 9386749 YP_003755006.1 CDS Hden_0868 NC_014313.1 907800 908450 R PFAM: protein of unknown function DUF2328; KEGG: mno:Mnod_1690 hypothetical protein; hypothetical protein complement(907800..908450) Hyphomicrobium denitrificans ATCC 51888 9386750 YP_003755007.1 CDS Hden_0869 NC_014313.1 908682 909581 D PFAM: inositol monophosphatase; KEGG: oan:Oant_0202 3'(2'),5'-bisphosphate nucleotidase; inositol monophosphatase 908682..909581 Hyphomicrobium denitrificans ATCC 51888 9386751 YP_003755008.1 CDS Hden_0870 NC_014313.1 909719 910654 D PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_0516 hypothetical protein; hypothetical protein 909719..910654 Hyphomicrobium denitrificans ATCC 51888 9386752 YP_003755009.1 CDS Hden_0871 NC_014313.1 910776 912215 D KEGG: rpd:RPD_3683 hypothetical protein; hypothetical protein 910776..912215 Hyphomicrobium denitrificans ATCC 51888 9386753 YP_003755010.1 CDS Hden_0872 NC_014313.1 912337 913347 D KEGG: oca:OCAR_4913 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 912337..913347 Hyphomicrobium denitrificans ATCC 51888 9386754 YP_003755011.1 CDS Hden_0873 NC_014313.1 913583 914314 D KEGG: bme:BMEI1294 nitrogen fixation regulation protein FixK; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 913583..914314 Hyphomicrobium denitrificans ATCC 51888 9386755 YP_003755012.1 CDS Hden_0874 NC_014313.1 914396 914641 R PFAM: hemic uptake protein hemP; KEGG: mmb:Mmol_2109 hemin transporter, hemin uptake protein; hemic uptake protein hemP complement(914396..914641) Hyphomicrobium denitrificans ATCC 51888 9386756 YP_003755013.1 CDS Hden_0875 NC_014313.1 914905 915240 D PFAM: antibiotic biosynthesis monooxygenase; KEGG: bja:bll7423 hypothetical protein; antibiotic biosynthesis monooxygenase 914905..915240 Hyphomicrobium denitrificans ATCC 51888 9386757 YP_003755014.1 CDS Hden_0876 NC_014313.1 915259 915804 D PFAM: protein of unknown function DUF1008; KEGG: atc:AGR_C_4470 hypothetical protein X; hypothetical protein 915259..915804 Hyphomicrobium denitrificans ATCC 51888 9386758 YP_003755015.1 CDS Hden_0877 NC_014313.1 915811 916734 D PFAM: periplasmic binding protein; KEGG: msl:Msil_1931 periplasmic binding protein; periplasmic binding protein 915811..916734 Hyphomicrobium denitrificans ATCC 51888 9386759 YP_003755016.1 CDS Hden_0878 NC_014313.1 916734 917792 D PFAM: transporter permease; KEGG: mrd:Mrad2831_4589 transporter permease; transporter permease 916734..917792 Hyphomicrobium denitrificans ATCC 51888 9386760 YP_003755017.1 CDS Hden_0879 NC_014313.1 917789 918631 D KEGG: mrd:Mrad2831_4590 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 917789..918631 Hyphomicrobium denitrificans ATCC 51888 9386761 YP_003755018.1 CDS Hden_0880 NC_014313.1 918757 919158 R KEGG: sti:Sthe_0732 rhodanese domain protein; PFAM: rhodanese; SMART: rhodanese; rhodanese complement(918757..919158) Hyphomicrobium denitrificans ATCC 51888 9386762 YP_003755019.1 CDS Hden_0881 NC_014313.1 919387 920337 D PFAM: Rare lipoprotein A; KEGG: ccs:CCNA_01901 lipoprotein; Rare lipoprotein A 919387..920337 Hyphomicrobium denitrificans ATCC 51888 9386763 YP_003755020.1 CDS Hden_0882 NC_014313.1 920389 921120 R KEGG: avi:Avi_0082 hypothetical protein; hypothetical protein complement(920389..921120) Hyphomicrobium denitrificans ATCC 51888 9386764 YP_003755021.1 CDS Hden_0883 NC_014313.1 921432 922772 D KEGG: pol:Bpro_5069 hypothetical protein; hypothetical protein 921432..922772 Hyphomicrobium denitrificans ATCC 51888 9386765 YP_003755022.1 CDS Hden_0884 NC_014313.1 922876 923736 D KEGG: rso:RS03125 hypothetical protein; hypothetical protein 922876..923736 Hyphomicrobium denitrificans ATCC 51888 9386766 YP_003755023.1 CDS Hden_0885 NC_014313.1 923784 924107 R KEGG: saq:Sare_0311 chaperonin GroEL; hypothetical protein complement(923784..924107) Hyphomicrobium denitrificans ATCC 51888 9386767 YP_003755024.1 CDS Hden_0886 NC_014313.1 924184 924402 R KEGG: reh:H16_B0392 extra-cytoplasmic solute receptor; hypothetical protein complement(924184..924402) Hyphomicrobium denitrificans ATCC 51888 9386768 YP_003755025.1 CDS Hden_0887 NC_014313.1 924873 925415 D KEGG: msl:Msil_1305 hypothetical protein; hypothetical protein 924873..925415 Hyphomicrobium denitrificans ATCC 51888 9386769 YP_003755026.1 CDS Hden_0888 NC_014313.1 925662 926804 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: emi:Emin_0863 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 925662..926804 Hyphomicrobium denitrificans ATCC 51888 9386770 YP_003755027.1 CDS Hden_0889 NC_014313.1 926814 927371 D PFAM: GCN5-related N-acetyltransferase; KEGG: sus:acid_6945 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 926814..927371 Hyphomicrobium denitrificans ATCC 51888 9386771 YP_003755028.1 CDS Hden_0890 NC_014313.1 927556 928167 D KEGG: rlg:Rleg_0769 cytochrome C; cytochrome C 927556..928167 Hyphomicrobium denitrificans ATCC 51888 9386772 YP_003755029.1 CDS Hden_0891 NC_014313.1 928352 929161 D KEGG: cmi:CMM_0820 secreted protein; hypothetical protein 928352..929161 Hyphomicrobium denitrificans ATCC 51888 9386773 YP_003755030.1 CDS Hden_0892 NC_014313.1 929204 929500 R KEGG: mrd:Mrad2831_5487 hypothetical protein; hypothetical protein complement(929204..929500) Hyphomicrobium denitrificans ATCC 51888 9386774 YP_003755031.1 CDS Hden_0893 NC_014313.1 929657 930046 R KEGG: ncr:NCU02184 hypothetical protein; hypothetical protein complement(929657..930046) Hyphomicrobium denitrificans ATCC 51888 9386775 YP_003755032.1 CDS Hden_0894 NC_014313.1 930387 933062 D KEGG: mno:Mnod_7191 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; PFAM: transketolase; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type 930387..933062 Hyphomicrobium denitrificans ATCC 51888 9386776 YP_003755033.1 CDS Hden_0895 NC_014313.1 933079 934371 D PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: met:M446_6300 dehydrogenase catalytic domain-containing protein; hypothetical protein 933079..934371 Hyphomicrobium denitrificans ATCC 51888 9386777 YP_003755034.1 CDS Hden_0896 NC_014313.1 934386 935831 D KEGG: bmj:BMULJ_02119 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase 934386..935831 Hyphomicrobium denitrificans ATCC 51888 9386778 YP_003755035.1 CDS Hden_0897 NC_014313.1 935914 936561 R KEGG: chl:Chy400_0215 autotransporter-associated beta strand repeat protein; autotransporter-associated beta strand repeat protein complement(935914..936561) Hyphomicrobium denitrificans ATCC 51888 9386779 YP_003755036.1 CDS Hden_0898 NC_014313.1 936953 937153 D KEGG: tgu:100218673 zinc finger CCCH-type containing 13; hypothetical protein 936953..937153 Hyphomicrobium denitrificans ATCC 51888 9386780 YP_003755037.1 CDS Hden_0899 NC_014313.1 937377 938333 D PFAM: patatin; KEGG: msl:Msil_0353 patatin; patatin 937377..938333 Hyphomicrobium denitrificans ATCC 51888 9386781 YP_003755038.1 CDS Hden_0900 NC_014313.1 938977 940242 R KEGG: xau:Xaut_4187 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit complement(938977..940242) Hyphomicrobium denitrificans ATCC 51888 9386782 YP_003755039.1 CDS Hden_0901 NC_014313.1 940246 940635 R PFAM: YCII-related; KEGG: msl:Msil_1747 YCII-related; YCII-like protein complement(940246..940635) Hyphomicrobium denitrificans ATCC 51888 9386783 YP_003755040.1 CDS Hden_0902 NC_014313.1 940862 941335 D PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: rec:RHECIAT_CH0002764 hypothetical protein; activator of Hsp90 ATPase 1 family protein 940862..941335 Hyphomicrobium denitrificans ATCC 51888 9386784 YP_003755041.1 CDS Hden_0903 NC_014313.1 941874 942215 D KEGG: nha:Nham_2144 hypothetical protein; hypothetical protein 941874..942215 Hyphomicrobium denitrificans ATCC 51888 9386786 YP_003755042.1 CDS Hden_0904 NC_014313.1 942392 942706 D KEGG: hypothetical protein; hypothetical protein 942392..942706 Hyphomicrobium denitrificans ATCC 51888 9386787 YP_003755043.1 CDS Hden_0905 NC_014313.1 942762 943619 R manually curated; TIGRFAM: RNA methyltransferase, TrmH family, group 3; KEGG: rpe:RPE_3682 RNA methyltransferase; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; TrmH family RNA methyltransferase complement(942762..943619) Hyphomicrobium denitrificans ATCC 51888 9386788 YP_003755044.1 CDS Hden_0906 NC_014313.1 944079 945335 D PFAM: integrase family protein; KEGG: met:M446_2924 integrase family protein; integrase family protein 944079..945335 Hyphomicrobium denitrificans ATCC 51888 9386790 YP_003755045.1 CDS Hden_0907 NC_014313.1 945499 948879 R KEGG: hla:Hlac_3437 helicase; PFAM: helicase; SNF2-related protein; SMART: DEAD-like helicase ; helicase; helicase complement(945499..948879) Hyphomicrobium denitrificans ATCC 51888 9386791 YP_003755046.1 CDS Hden_0908 NC_014313.1 948888 950483 R SMART: HNH nuclease; KEGG: dps:DP2015 hypothetical protein; HNH nuclease complement(948888..950483) Hyphomicrobium denitrificans ATCC 51888 9386792 YP_003755047.1 CDS Hden_0909 NC_014313.1 950505 954524 R KEGG: hla:Hlac_3438 hypothetical protein; hypothetical protein complement(950505..954524) Hyphomicrobium denitrificans ATCC 51888 9386793 YP_003755048.1 CDS Hden_0910 NC_014313.1 955068 955535 R KEGG: plt:Plut_0854 invertase/recombinase like protein; PFAM: Resolvase domain; SMART: Resolvase domain; resolvase complement(955068..955535) Hyphomicrobium denitrificans ATCC 51888 9386794 YP_003755049.1 CDS Hden_0913 NC_014313.1 957064 958590 D KEGG: cak:Caul_1386 hypothetical protein; hypothetical protein 957064..958590 Hyphomicrobium denitrificans ATCC 51888 9386797 YP_003755050.1 CDS Hden_0914 NC_014313.1 958979 959263 D KEGG: sil:SPO2655 replicative DNA helicase; hypothetical protein 958979..959263 Hyphomicrobium denitrificans ATCC 51888 9386798 YP_003755051.1 CDS Hden_0915 NC_014313.1 959572 960228 R KEGG: bja:bll2759 response regulator FixJ; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator complement(959572..960228) Hyphomicrobium denitrificans ATCC 51888 9386799 YP_003755052.1 CDS Hden_0916 NC_014313.1 960225 961865 R KEGG: azl:AZL_c01170 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; MASE1 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(960225..961865) Hyphomicrobium denitrificans ATCC 51888 9386800 YP_003755053.1 CDS Hden_0917 NC_014313.1 962202 965396 D KEGG: gvi:gll0876 AcrB/AcrD/AcrF family multidrug efflux protein; manually curated; PFAM: acriflavin resistance protein; acriflavin resistance protein 962202..965396 Hyphomicrobium denitrificans ATCC 51888 9386801 YP_003755054.1 CDS Hden_0918 NC_014313.1 965383 966705 D KEGG: bcj:BCAS0583 efflux system transport protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 965383..966705 Hyphomicrobium denitrificans ATCC 51888 9386802 YP_003755055.1 CDS Hden_0919 NC_014313.1 966705 968237 D KEGG: esa:ESA_02519 hypothetical protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 966705..968237 Hyphomicrobium denitrificans ATCC 51888 9386803 YP_003755056.1 CDS Hden_0920 NC_014313.1 968280 969059 R KEGG: ana:alr1677 hypothetical protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(968280..969059) Hyphomicrobium denitrificans ATCC 51888 9386804 YP_003755057.1 CDS Hden_0921 NC_014313.1 969280 969384 D hypothetical protein 969280..969384 Hyphomicrobium denitrificans ATCC 51888 9386805 YP_003755058.1 CDS Hden_0922 NC_014313.1 969822 970181 R KEGG: ret:RHE_PE00140 hypothetical protein; hypothetical protein complement(969822..970181) Hyphomicrobium denitrificans ATCC 51888 9386806 YP_003755059.1 CDS Hden_0924 NC_014313.1 970718 972037 R KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein complement(970718..972037) Hyphomicrobium denitrificans ATCC 51888 9386808 YP_003755060.1 CDS Hden_0925 NC_014313.1 972589 975330 D KEGG: azc:AZC_1424 nitrite extrusion protein; TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; nitrite transporter 972589..975330 Hyphomicrobium denitrificans ATCC 51888 9386809 YP_003755061.1 CDS Hden_0926 NC_014313.1 975346 979089 D KEGG: azc:AZC_1425 nitrate reductase subunit alpha protein; TIGRFAM: nitrate reductase, subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 975346..979089 Hyphomicrobium denitrificans ATCC 51888 9386810 YP_003755062.1 CDS Hden_0927 NC_014313.1 979086 980612 D TIGRFAM: nitrate reductase subunit beta; KEGG: azc:AZC_1426 nitrate reductase subunit beta protein; nitrate reductase subunit beta 979086..980612 Hyphomicrobium denitrificans ATCC 51888 9386811 YP_003755063.1 CDS Hden_0928 NC_014313.1 980612 981310 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; KEGG: azc:AZC_1427 nitrate reductase subunit delta protein; PFAM: nitrate reductase subunit delta; nitrate reductase molybdenum cofactor assembly chaperone 980612..981310 Hyphomicrobium denitrificans ATCC 51888 9386812 YP_003755064.1 CDS Hden_0929 NC_014313.1 981327 982076 D TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: azc:AZC_1428 nitrate reductase subunit gamma protein; PFAM: nitrate reductase subunit gamma; respiratory nitrate reductase subunit gamma 981327..982076 Hyphomicrobium denitrificans ATCC 51888 9386813 YP_003755065.1 CDS Hden_0930 NC_014313.1 982080 982958 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azc:AZC_1429 peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 982080..982958 Hyphomicrobium denitrificans ATCC 51888 9386814 YP_003755066.1 CDS Hden_0931 NC_014313.1 982966 983247 D KEGG: mrd:Mrad2831_2587 hypothetical protein; hypothetical protein 982966..983247 Hyphomicrobium denitrificans ATCC 51888 9386815 YP_003755067.1 CDS Hden_0932 NC_014313.1 983381 983632 D KEGG: sjp:SJA_C1-00680 hypothetical protein; hypothetical protein 983381..983632 Hyphomicrobium denitrificans ATCC 51888 9386816 YP_003755068.1 CDS Hden_0933 NC_014313.1 983746 984000 D KEGG: scb:SCAB_59641 hypothetical protein; hypothetical protein 983746..984000 Hyphomicrobium denitrificans ATCC 51888 9386817 YP_003755069.1 CDS Hden_0934 NC_014313.1 984045 984545 R PFAM: protein of unknown function DUF2165, transmembrane; KEGG: pfl:PFL_0497 hypothetical protein; hypothetical protein complement(984045..984545) Hyphomicrobium denitrificans ATCC 51888 9386818 YP_003755070.1 CDS Hden_0935 NC_014313.1 984710 984961 D KEGG: ddi:DDB_0191207 glycoprotein gp100; glycoprotein gp100 984710..984961 Hyphomicrobium denitrificans ATCC 51888 9386819 YP_003755071.1 CDS Hden_0936 NC_014313.1 985001 988117 R PFAM: acriflavin resistance protein; KEGG: nwi:Nwi_1521 acriflavin resistance protein; acriflavin resistance protein complement(985001..988117) Hyphomicrobium denitrificans ATCC 51888 9386820 YP_003755072.1 CDS Hden_0937 NC_014313.1 988122 991289 R PFAM: acriflavin resistance protein; KEGG: bja:blr4457 AcrB/AcrD/AcrF family protein; acriflavin resistance protein complement(988122..991289) Hyphomicrobium denitrificans ATCC 51888 9386821 YP_003755073.1 CDS Hden_0938 NC_014313.1 991286 992677 R KEGG: ara:Arad_4549 secretion protein HlyD; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(991286..992677) Hyphomicrobium denitrificans ATCC 51888 9386822 YP_003755074.1 CDS Hden_0939 NC_014313.1 993132 995114 D TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: bra:BRADO2968 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 993132..995114 Hyphomicrobium denitrificans ATCC 51888 9386823 YP_003755075.1 CDS Hden_0940 NC_014313.1 995135 995647 R TIGRFAM: methionine-R-sulfoxide reductase; KEGG: dac:Daci_3070 methionine-R-sulfoxide reductase; PFAM: methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(995135..995647) Hyphomicrobium denitrificans ATCC 51888 9386824 YP_003755076.1 CDS Hden_0941 NC_014313.1 995758 996480 R KEGG: pzu:PHZ_c1072 sugar fermentation stimulation protein A; TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; sugar fermentation stimulation protein complement(995758..996480) Hyphomicrobium denitrificans ATCC 51888 9386825 YP_003755077.1 CDS Hden_0942 NC_014313.1 996582 997313 D PFAM: molybdopterin binding domain; KEGG: azc:AZC_1819 competence-damage associated protein; molybdopterin binding domain-containing protein 996582..997313 Hyphomicrobium denitrificans ATCC 51888 9386826 YP_003755078.1 CDS Hden_0943 NC_014313.1 997354 997974 R KEGG: ara:Arad_8639 sugar ABC transporter; hypothetical protein complement(997354..997974) Hyphomicrobium denitrificans ATCC 51888 9386827 YP_003755079.1 CDS Hden_0944 NC_014313.1 998362 999015 D KEGG: rci:RRC32 hypothetical protein; hypothetical protein 998362..999015 Hyphomicrobium denitrificans ATCC 51888 9386828 YP_003755080.1 CDS Hden_0945 NC_014313.1 999278 1000882 R PFAM: phosphate transporter; KEGG: bra:BRADO6359 inorganic phosphate transporter; phosphate transporter complement(999278..1000882) Hyphomicrobium denitrificans ATCC 51888 9386829 YP_003755081.1 CDS Hden_0946 NC_014313.1 1001323 1001478 D hypothetical protein 1001323..1001478 Hyphomicrobium denitrificans ATCC 51888 9386830 YP_003755082.1 CDS Hden_0947 NC_014313.1 1001527 1001754 D KEGG: rso:RSc2279 signal peptide protein; signal peptide protein 1001527..1001754 Hyphomicrobium denitrificans ATCC 51888 9386831 YP_003755083.1 CDS Hden_0948 NC_014313.1 1002028 1002333 R PFAM: excinuclease ABC C subunit domain protein; KEGG: cpc:Cpar_1954 excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain-containing protein complement(1002028..1002333) Hyphomicrobium denitrificans ATCC 51888 9386832 YP_003755084.1 CDS Hden_0949 NC_014313.1 1002543 1003115 R manually curated; KEGG: hba:Hbal_2279 hypothetical protein; hypothetical protein complement(1002543..1003115) Hyphomicrobium denitrificans ATCC 51888 9386833 YP_003755085.1 CDS Hden_0950 NC_014313.1 1003180 1006941 R KEGG: mno:Mnod_6038 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase class II vitamin B12-dependent; ribonucleotide reductase large subunit; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent complement(1003180..1006941) Hyphomicrobium denitrificans ATCC 51888 9386834 YP_003755086.1 CDS Hden_0951 NC_014313.1 1007590 1007988 D PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: pla:Plav_3297 NADH:ubiquinone oxidoreductase 17.2 kD subunit; NADH:ubiquinone oxidoreductase 17.2 kD subunit 1007590..1007988 Hyphomicrobium denitrificans ATCC 51888 9386835 YP_003755087.1 CDS Hden_0952 NC_014313.1 1007993 1008640 D PFAM: protein of unknown function DUF2155; KEGG: mno:Mnod_6040 hypothetical protein; hypothetical protein 1007993..1008640 Hyphomicrobium denitrificans ATCC 51888 9386836 YP_003755088.1 CDS Hden_0953 NC_014313.1 1008656 1009702 R KEGG: pla:Plav_2897 delta-aminolevulinic acid dehydratase; PFAM: delta-aminolevulinic acid dehydratase; porphobilinogen synthase complement(1008656..1009702) Hyphomicrobium denitrificans ATCC 51888 9386837 YP_003755089.1 CDS Hden_0954 NC_014313.1 1009836 1011107 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: bid:Bind_0884 peptidoglycan binding domain-containing protein; ErfK/YbiS/YcfS/YnhG family protein complement(1009836..1011107) Hyphomicrobium denitrificans ATCC 51888 9386838 YP_003755090.1 CDS Hden_0955 NC_014313.1 1011476 1011985 R KEGG: sme:SMc01768 transcription regulator protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator complement(1011476..1011985) Hyphomicrobium denitrificans ATCC 51888 9386839 YP_003755091.1 CDS Hden_0956 NC_014313.1 1012205 1013323 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: met:M446_6833 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1012205..1013323) Hyphomicrobium denitrificans ATCC 51888 9386840 YP_003755092.1 CDS Hden_0957 NC_014313.1 1013541 1014740 D PFAM: Extensin family protein; KEGG: xau:Xaut_2474 extensin family protein; Extensin family protein 1013541..1014740 Hyphomicrobium denitrificans ATCC 51888 9386841 YP_003755093.1 CDS Hden_0958 NC_014313.1 1014823 1014939 D hypothetical protein 1014823..1014939 Hyphomicrobium denitrificans ATCC 51888 9386842 YP_003755094.1 CDS Hden_0959 NC_014313.1 1015047 1016276 D TIGRFAM: 5-aminolevulinic acid synthase; KEGG: msl:Msil_2030 5-aminolevulinate synthase; PFAM: aminotransferase class I and II; 5-aminolevulinic acid synthase 1015047..1016276 Hyphomicrobium denitrificans ATCC 51888 9386843 YP_003755095.1 CDS Hden_0960 NC_014313.1 1016604 1017908 D KEGG: mch:Mchl_3495 glycine hydroxymethyltransferase; PFAM: glycine hydroxymethyltransferase; glycine hydroxymethyltransferase 1016604..1017908 Hyphomicrobium denitrificans ATCC 51888 9386844 YP_003755096.1 CDS Hden_0961 NC_014313.1 1018171 1018695 D PFAM: ATP-cone domain protein; KEGG: mlo:mlr8403 transcriptional regulator NrdR; ATP-cone domain-containing protein 1018171..1018695 Hyphomicrobium denitrificans ATCC 51888 9386845 YP_003755097.1 CDS Hden_0962 NC_014313.1 1018700 1019806 D KEGG: xau:Xaut_4278 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD 1018700..1019806 Hyphomicrobium denitrificans ATCC 51888 9386846 YP_003755098.1 CDS Hden_0963 NC_014313.1 1019830 1020423 D TIGRFAM: riboflavin synthase, subunit alpha; KEGG: azl:AZL_010170 riboflavin synthase alpha chain; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 1019830..1020423 Hyphomicrobium denitrificans ATCC 51888 9386847 YP_003755099.1 CDS Hden_0964 NC_014313.1 1020423 1021571 D KEGG: pla:Plav_2912 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1020423..1021571 Hyphomicrobium denitrificans ATCC 51888 9386848 YP_003755100.1 CDS Hden_0965 NC_014313.1 1021579 1022082 D KEGG: rce:RC1_1337 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 1021579..1022082 Hyphomicrobium denitrificans ATCC 51888 9386849 YP_003755101.1 CDS Hden_0966 NC_014313.1 1022079 1022591 D KEGG: bja:bll5028 transcription antitermination protein NusB; TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 1022079..1022591 Hyphomicrobium denitrificans ATCC 51888 9386850 YP_003755102.1 CDS Hden_0967 NC_014313.1 1022608 1023633 D TIGRFAM: thiamine-monophosphate kinase; KEGG: mea:Mex_1p3373 thiamin-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase 1022608..1023633 Hyphomicrobium denitrificans ATCC 51888 9386851 YP_003755103.1 CDS Hden_0968 NC_014313.1 1023870 1025228 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: msl:Msil_2112 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 1023870..1025228 Hyphomicrobium denitrificans ATCC 51888 9386852 YP_003755104.1 CDS Hden_0969 NC_014313.1 1025241 1025720 R KEGG: bja:bll3178 transcriptional regulatory protein; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type; AsnC family transcriptional regulator complement(1025241..1025720) Hyphomicrobium denitrificans ATCC 51888 9386853 YP_003755105.1 CDS Hden_0970 NC_014313.1 1025862 1026986 D TIGRFAM: alanine dehydrogenase; KEGG: sme:SMc01169 alanine dehydrogenase oxidoreductase protein; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase 1025862..1026986 Hyphomicrobium denitrificans ATCC 51888 9386854 YP_003755106.1 CDS Hden_0971 NC_014313.1 1027136 1028458 R KEGG: sme:SMc01534 omega amino acid--pyruvate transaminase; PFAM: aminotransferase class-III; beta-alanine--pyruvate transaminase complement(1027136..1028458) Hyphomicrobium denitrificans ATCC 51888 9386855 YP_003755107.1 CDS Hden_0972 NC_014313.1 1028536 1029831 R KEGG: azl:AZL_c00280 4-aminobutyrate aminotransferase; TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; 4-aminobutyrate aminotransferase complement(1028536..1029831) Hyphomicrobium denitrificans ATCC 51888 9386856 YP_003755108.1 CDS Hden_0973 NC_014313.1 1029868 1031322 R KEGG: cak:Caul_3954 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinic semialdehyde dehydrogenase complement(1029868..1031322) Hyphomicrobium denitrificans ATCC 51888 9386857 YP_003755109.1 CDS Hden_0974 NC_014313.1 1031341 1032828 R PFAM: aldehyde dehydrogenase; KEGG: cak:Caul_3955 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1031341..1032828) Hyphomicrobium denitrificans ATCC 51888 9386858 YP_003755110.1 CDS Hden_0975 NC_014313.1 1032840 1034189 R PFAM: glutamine synthetase; KEGG: cak:Caul_3952 glutamine synthetase; glutamine synthetase complement(1032840..1034189) Hyphomicrobium denitrificans ATCC 51888 9386859 YP_003755111.1 CDS Hden_0976 NC_014313.1 1034186 1034938 R KEGG: hna:Hneap_2381 gamma-glutamyl-gamma-aminobutyrate hydrolase; PFAM: peptidase C26; gamma-glutamyl-gamma-aminobutyrate hydrolase complement(1034186..1034938) Hyphomicrobium denitrificans ATCC 51888 9386860 YP_003755112.1 CDS Hden_0977 NC_014313.1 1034935 1036320 R PFAM: aminotransferase class-III; KEGG: mlo:mll1207 aminotransferase; class III aminotransferase complement(1034935..1036320) Hyphomicrobium denitrificans ATCC 51888 9386861 YP_003755113.1 CDS Hden_0978 NC_014313.1 1036658 1037311 D PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bac:BamMC406_0585 TetR family transcriptional regulator; TetR family transcriptional regulator 1036658..1037311 Hyphomicrobium denitrificans ATCC 51888 9386862 YP_003755114.1 CDS Hden_0979 NC_014313.1 1037401 1038642 R PFAM: glucose sorbosone dehydrogenase; KEGG: dba:Dbac_1142 glucose sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(1037401..1038642) Hyphomicrobium denitrificans ATCC 51888 9386863 YP_003755115.1 CDS Hden_0980 NC_014313.1 1038963 1039199 R KEGG: nmc:NMC0998 hypothetical protein; hypothetical protein complement(1038963..1039199) Hyphomicrobium denitrificans ATCC 51888 9386864 YP_003755116.1 CDS Hden_0981 NC_014313.1 1039397 1039741 R KEGG: msl:Msil_3909 hypothetical protein; hypothetical protein complement(1039397..1039741) Hyphomicrobium denitrificans ATCC 51888 9386865 YP_003755117.1 CDS Hden_0982 NC_014313.1 1039743 1040651 R KEGG: bbt:BBta_7804 heat shock protein-DnaJ-like protein; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein complement(1039743..1040651) Hyphomicrobium denitrificans ATCC 51888 9386866 YP_003755118.1 CDS Hden_0983 NC_014313.1 1040841 1041263 D KEGG: dre:405822 phosphoglucomutase 2; hypothetical protein 1040841..1041263 Hyphomicrobium denitrificans ATCC 51888 9386867 YP_003755119.1 CDS Hden_0984 NC_014313.1 1041302 1041610 R KEGG: rpc:RPC_3683 hypothetical protein; hypothetical protein complement(1041302..1041610) Hyphomicrobium denitrificans ATCC 51888 9386868 YP_003755120.1 CDS Hden_0985 NC_014313.1 1041985 1042440 D KEGG: bxe:Bxe_B0776 membrane glycoprotein; hypothetical protein 1041985..1042440 Hyphomicrobium denitrificans ATCC 51888 9386869 YP_003755121.1 CDS Hden_0986 NC_014313.1 1042778 1043077 R KEGG: aga:AgaP_AGAP011790 CLIP-domain serine protease subfamily A (AGAP011790-PB); hypothetical protein complement(1042778..1043077) Hyphomicrobium denitrificans ATCC 51888 9386870 YP_003755122.1 CDS Hden_0987 NC_014313.1 1043262 1043525 D hypothetical protein 1043262..1043525 Hyphomicrobium denitrificans ATCC 51888 9386871 YP_003755123.1 CDS Hden_0988 NC_014313.1 1043576 1044652 R KEGG: bja:bll0419 hypothetical protein; hypothetical protein complement(1043576..1044652) Hyphomicrobium denitrificans ATCC 51888 9386872 YP_003755124.1 CDS Hden_0989 NC_014313.1 1044805 1045335 R TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; KEGG: bmj:BMULJ_05584 isopentenyl-diphosphate delta-isomerase; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase, type 1 complement(1044805..1045335) Hyphomicrobium denitrificans ATCC 51888 9386873 YP_003755125.1 CDS Hden_0990 NC_014313.1 1045485 1046021 R KEGG: pla:Plav_0784 hypothetical protein; hypothetical protein complement(1045485..1046021) Hyphomicrobium denitrificans ATCC 51888 9386874 YP_003755126.1 CDS Hden_0991 NC_014313.1 1046271 1046639 D KEGG: sit:TM1040_0672 hypothetical protein; hypothetical protein 1046271..1046639 Hyphomicrobium denitrificans ATCC 51888 9386875 YP_003755127.1 CDS Hden_0992 NC_014313.1 1046729 1049209 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_1025 TonB-dependent receptor; TonB-dependent receptor 1046729..1049209 Hyphomicrobium denitrificans ATCC 51888 9386876 YP_003755128.1 CDS Hden_0993 NC_014313.1 1049213 1050439 D KEGG: nha:Nham_1024 BNR repeat-containing glycosyl hydrolase; BNR repeat-containing glycosyl hydrolase 1049213..1050439 Hyphomicrobium denitrificans ATCC 51888 9386877 YP_003755129.1 CDS Hden_0994 NC_014313.1 1050436 1050933 D KEGG: nha:Nham_1023 signal peptide protein; signal peptide protein 1050436..1050933 Hyphomicrobium denitrificans ATCC 51888 9386878 YP_003755130.1 CDS Hden_0995 NC_014313.1 1051068 1051331 D PFAM: transglycosylase; KEGG: oan:Oant_1065 transglycosylase; transglycosylase 1051068..1051331 Hyphomicrobium denitrificans ATCC 51888 9386879 YP_003755131.1 CDS Hden_0996 NC_014313.1 1051449 1052429 R PFAM: 2-nitropropane dioxygenase NPD; KEGG: mno:Mnod_8517 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase NPD complement(1051449..1052429) Hyphomicrobium denitrificans ATCC 51888 9386880 YP_003755132.1 CDS Hden_0997 NC_014313.1 1052456 1052893 R KEGG: hha:Hhal_2401 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator complement(1052456..1052893) Hyphomicrobium denitrificans ATCC 51888 9386881 YP_003755133.1 CDS Hden_0998 NC_014313.1 1052989 1053399 D KEGG: pzu:PHZ_c2662 truncated hemoglobin-like protein; truncated hemoglobin-like protein 1052989..1053399 Hyphomicrobium denitrificans ATCC 51888 9386882 YP_003755134.1 CDS Hden_0999 NC_014313.1 1053430 1054287 R KEGG: sro:Sros_3921 multidrug efflux protein NorA; hypothetical protein complement(1053430..1054287) Hyphomicrobium denitrificans ATCC 51888 9386883 YP_003755135.1 CDS Hden_1000 NC_014313.1 1054621 1055433 R PFAM: Sulphur oxidation protein SoxZ; KEGG: xau:Xaut_1777 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ complement(1054621..1055433) Hyphomicrobium denitrificans ATCC 51888 9386885 YP_003755136.1 CDS Hden_1001 NC_014313.1 1055675 1056007 R PFAM: protein of unknown function DUF583; KEGG: rru:Rru_A1867 hypothetical protein; hypothetical protein complement(1055675..1056007) Hyphomicrobium denitrificans ATCC 51888 9386886 YP_003755137.1 CDS Hden_1002 NC_014313.1 1056155 1057762 R PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: mno:Mnod_1830 periplasmic glucan biosynthesis protein MdoG; periplasmic glucan biosynthesis protein MdoG complement(1056155..1057762) Hyphomicrobium denitrificans ATCC 51888 9386887 YP_003755138.1 CDS Hden_1003 NC_014313.1 1058043 1058426 D PFAM: protein of unknown function DUF74; KEGG: cak:Caul_3365 hypothetical protein; hypothetical protein 1058043..1058426 Hyphomicrobium denitrificans ATCC 51888 9386888 YP_003755139.1 CDS Hden_1004 NC_014313.1 1058711 1058941 D KEGG: pla:Plav_2723 preprotein translocase, SecE subunit; TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; preprotein translocase subunit SecE 1058711..1058941 Hyphomicrobium denitrificans ATCC 51888 9386890 YP_003755140.1 CDS Hden_1005 NC_014313.1 1058992 1059567 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; KOW domain protein; KEGG: rpd:RPD_3202 transcription antitermination protein NusG; SMART: NGN domain protein; KOW domain protein; NusG antitermination factor 1058992..1059567 Hyphomicrobium denitrificans ATCC 51888 9386891 YP_003755141.1 CDS Hden_1006 NC_014313.1 1059779 1060225 D TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11-like; KEGG: pla:Plav_2725 ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 1059779..1060225 Hyphomicrobium denitrificans ATCC 51888 9386892 YP_003755142.1 CDS Hden_1007 NC_014313.1 1060230 1060979 D KEGG: rhi:NGR_c11790 50S ribosomal protein L1; TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; 50S ribosomal protein L1 1060230..1060979 Hyphomicrobium denitrificans ATCC 51888 9386893 YP_003755143.1 CDS Hden_1008 NC_014313.1 1061308 1061826 D PFAM: ribosomal protein L10; KEGG: bbt:BBta_5083 50S ribosomal protein L10; 50S ribosomal protein L10 1061308..1061826 Hyphomicrobium denitrificans ATCC 51888 9386894 YP_003755144.1 CDS Hden_1009 NC_014313.1 1061939 1062316 D KEGG: gdj:Gdia_2959 50S ribosomal protein L7/L12; TIGRFAM: ribosomal protein L7/L12; PFAM: ribosomal protein L7/L12; 50S ribosomal protein L7/L12 1061939..1062316 Hyphomicrobium denitrificans ATCC 51888 9386895 YP_003755145.1 CDS Hden_1010 NC_014313.1 1062575 1066726 D KEGG: bra:BRADO3054 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 7; RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta, external 1 domain; DNA-directed RNA polymerase subunit beta 1062575..1066726 Hyphomicrobium denitrificans ATCC 51888 9386896 YP_003755146.1 CDS Hden_1011 NC_014313.1 1066894 1071114 D TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase subunit alpha; RNA polymerase Rpb1 domain 4; KEGG: pla:Plav_2730 DNA-directed RNA polymerase subunit beta'; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 1066894..1071114 Hyphomicrobium denitrificans ATCC 51888 9386897 YP_003755147.1 CDS Hden_1012 NC_014313.1 1071598 1071969 D KEGG: bid:Bind_1349 30S ribosomal protein S12; TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; 30S ribosomal protein S12 1071598..1071969 Hyphomicrobium denitrificans ATCC 51888 9386898 YP_003755148.1 CDS Hden_1013 NC_014313.1 1072038 1072508 D KEGG: avi:Avi_1834 30S ribosomal protein S7; TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; 30S ribosomal protein S7 1072038..1072508 Hyphomicrobium denitrificans ATCC 51888 9386899 YP_003755149.1 CDS Hden_1014 NC_014313.1 1072540 1074630 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain IV; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: azc:AZC_2557 elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain protein; translation elongation factor G 1072540..1074630 Hyphomicrobium denitrificans ATCC 51888 9386900 YP_003755150.1 CDS Hden_1015 NC_014313.1 1074696 1075904 D KEGG: gau:GAU_0871 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; translation elongation factor Tu 1074696..1075904 Hyphomicrobium denitrificans ATCC 51888 9386901 YP_003755151.1 CDS Hden_1016 NC_014313.1 1075962 1076270 D KEGG: rpc:RPC_3449 30S ribosomal protein S10; TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; 30S ribosomal protein S10 1075962..1076270 Hyphomicrobium denitrificans ATCC 51888 9386902 YP_003755152.1 CDS Hden_1017 NC_014313.1 1076335 1077036 D KEGG: nha:Nham_1545 50S ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; 50S ribosomal protein L3 1076335..1077036 Hyphomicrobium denitrificans ATCC 51888 9386903 YP_003755153.1 CDS Hden_1018 NC_014313.1 1077036 1077653 D PFAM: ribosomal protein L4/L1e; KEGG: pla:Plav_2737 ribosomal protein L4/L1e; 50S ribosomal protein L4/L1e 1077036..1077653 Hyphomicrobium denitrificans ATCC 51888 9386904 YP_003755154.1 CDS Hden_1019 NC_014313.1 1077650 1077946 D PFAM: ribosomal protein L25/L23; KEGG: pla:Plav_2738 ribosomal protein L25/L23; 50S ribosomal protein L25/L23 1077650..1077946 Hyphomicrobium denitrificans ATCC 51888 9386905 YP_003755155.1 CDS Hden_1020 NC_014313.1 1077959 1078783 D KEGG: mmr:Mmar10_1792 50S ribosomal protein L2; TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; 50S ribosomal protein L2 1077959..1078783 Hyphomicrobium denitrificans ATCC 51888 9386906 YP_003755156.1 CDS Hden_1021 NC_014313.1 1078808 1079086 D KEGG: bqu:BQ08190 30S ribosomal protein S19; TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; 30S ribosomal protein S19 1078808..1079086 Hyphomicrobium denitrificans ATCC 51888 9386907 YP_003755157.1 CDS Hden_1022 NC_014313.1 1079086 1079532 D KEGG: mpo:Mpop_2128 ribosomal protein L22; TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; 50S ribosomal protein L22 1079086..1079532 Hyphomicrobium denitrificans ATCC 51888 9386908 YP_003755158.1 CDS Hden_1023 NC_014313.1 1079534 1080361 D TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; ribosomal protein S3 domain; KH type 2 domain protein; KEGG: pla:Plav_2742 ribosomal protein S3; SMART: KH domain protein; 30S ribosomal protein S3 1079534..1080361 Hyphomicrobium denitrificans ATCC 51888 9386909 YP_003755159.1 CDS Hden_1024 NC_014313.1 1080384 1080794 D KEGG: rpt:Rpal_3660 50S ribosomal protein L16; TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L10e/L16; 50S ribosomal protein L16 1080384..1080794 Hyphomicrobium denitrificans ATCC 51888 9386910 YP_003755160.1 CDS Hden_1025 NC_014313.1 1080811 1081017 D KEGG: bid:Bind_1362 ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; 50S ribosomal protein L29 1080811..1081017 Hyphomicrobium denitrificans ATCC 51888 9386911 YP_003755161.1 CDS Hden_1026 NC_014313.1 1081032 1081262 D KEGG: bbk:BARBAKC583_0707 30S ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; 30S ribosomal protein S17 1081032..1081262 Hyphomicrobium denitrificans ATCC 51888 9386912 YP_003755162.1 CDS Hden_1027 NC_014313.1 1081406 1081774 D KEGG: pla:Plav_2746 50S ribosomal protein L14; TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; 50S ribosomal protein L14 1081406..1081774 Hyphomicrobium denitrificans ATCC 51888 9386913 YP_003755163.1 CDS Hden_1028 NC_014313.1 1081774 1082100 D TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: azc:AZC_2543 ribosomal protein L24; SMART: KOW domain protein; 50S ribosomal protein L24 1081774..1082100 Hyphomicrobium denitrificans ATCC 51888 9386914 YP_003755164.1 CDS Hden_1029 NC_014313.1 1082104 1082784 D PFAM: ribosomal protein L5; KEGG: msl:Msil_0568 ribosomal protein L5; 50S ribosomal protein L5 1082104..1082784 Hyphomicrobium denitrificans ATCC 51888 9386915 YP_003755165.1 CDS Hden_1030 NC_014313.1 1082829 1083134 D PFAM: ribosomal protein S14; KEGG: rce:RC1_0724 ribosomal protein S14; 30S ribosomal protein S14 1082829..1083134 Hyphomicrobium denitrificans ATCC 51888 9386916 YP_003755166.1 CDS Hden_1031 NC_014313.1 1083147 1083545 D PFAM: ribosomal protein S8; KEGG: cak:Caul_1628 ribosomal protein S8; 30S ribosomal protein S8 1083147..1083545 Hyphomicrobium denitrificans ATCC 51888 9386917 YP_003755167.1 CDS Hden_1032 NC_014313.1 1083593 1084135 D KEGG: mpo:Mpop_2149 ribosomal protein L6; TIGRFAM: ribosomal protein L6; PFAM: ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 1083593..1084135 Hyphomicrobium denitrificans ATCC 51888 9386918 YP_003755168.1 CDS Hden_1033 NC_014313.1 1084147 1084509 D KEGG: oan:Oant_1972 50S ribosomal protein L18; TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 1084147..1084509 Hyphomicrobium denitrificans ATCC 51888 9386919 YP_003755169.1 CDS Hden_1034 NC_014313.1 1084531 1085106 D KEGG: nwi:Nwi_1381 30S ribosomal protein S5; TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 ; ribosomal protein S5 domain protein; 30S ribosomal protein S5 1084531..1085106 Hyphomicrobium denitrificans ATCC 51888 9386920 YP_003755170.1 CDS Hden_1035 NC_014313.1 1085162 1085353 D KEGG: atu:Atu8065 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; 50S ribosomal protein L30 1085162..1085353 Hyphomicrobium denitrificans ATCC 51888 9386921 YP_003755171.1 CDS Hden_1036 NC_014313.1 1085359 1085910 D KEGG: rpt:Rpal_3648 50S ribosomal protein L15; TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; 50S ribosomal protein L15 1085359..1085910 Hyphomicrobium denitrificans ATCC 51888 9386922 YP_003755172.1 CDS Hden_1037 NC_014313.1 1086051 1087394 D KEGG: xau:Xaut_4778 preprotein translocase subunit SecY; TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; preprotein translocase subunit SecY 1086051..1087394 Hyphomicrobium denitrificans ATCC 51888 9386923 YP_003755173.1 CDS Hden_1038 NC_014313.1 1087391 1087984 D KEGG: azc:AZC_2533 adenylate kinase; TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase 1087391..1087984 Hyphomicrobium denitrificans ATCC 51888 9386924 YP_003755174.1 CDS Hden_1039 NC_014313.1 1088224 1088601 D KEGG: mpo:Mpop_2142 ribosomal protein S13; TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; 30S ribosomal protein S13 1088224..1088601 Hyphomicrobium denitrificans ATCC 51888 9386925 YP_003755175.1 CDS Hden_1040 NC_014313.1 1088691 1089092 D KEGG: azl:AZL_018770 small subunit ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; 30S ribosomal protein S11 1088691..1089092 Hyphomicrobium denitrificans ATCC 51888 9386926 YP_003755176.1 CDS Hden_1041 NC_014313.1 1089197 1090219 D TIGRFAM: DNA-directed RNA polymerase, subunit alpha; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; KEGG: pla:Plav_2760 DNA-directed RNA polymerase subunit alpha; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 1089197..1090219 Hyphomicrobium denitrificans ATCC 51888 9386927 YP_003755177.1 CDS Hden_1042 NC_014313.1 1090338 1090766 D KEGG: hne:HNE_2826 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; 50S ribosomal protein L17 1090338..1090766 Hyphomicrobium denitrificans ATCC 51888 9386928 YP_003755178.1 CDS Hden_1043 NC_014313.1 1090925 1091953 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: hne:HNE_3360 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1090925..1091953 Hyphomicrobium denitrificans ATCC 51888 9386929 YP_003755179.1 CDS Hden_1044 NC_014313.1 1092051 1093481 D SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: pla:Plav_2762 protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1092051..1093481 Hyphomicrobium denitrificans ATCC 51888 9386930 YP_003755180.1 CDS Hden_1045 NC_014313.1 1093503 1094303 R PFAM: protein of unknown function DUF81; KEGG: pen:PSEEN1839 hypothetical protein; hypothetical protein complement(1093503..1094303) Hyphomicrobium denitrificans ATCC 51888 9386931 YP_003755181.1 CDS Hden_1046 NC_014313.1 1094436 1095968 R TIGRFAM: sulfate adenylyltransferase, large subunit; KEGG: gbe:GbCGDNIH1_2160 adenylylsulfate kinase; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit complement(1094436..1095968) Hyphomicrobium denitrificans ATCC 51888 9386932 YP_003755182.1 CDS Hden_1047 NC_014313.1 1095968 1096873 R KEGG: mlo:mlr7575 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; sulfate adenylyltransferase, small subunit complement(1095968..1096873) Hyphomicrobium denitrificans ATCC 51888 9386933 YP_003755183.1 CDS Hden_1048 NC_014313.1 1096870 1097679 R TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; KEGG: mch:Mchl_2510 adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase; adenylylsulfate reductase, thioredoxin dependent complement(1096870..1097679) Hyphomicrobium denitrificans ATCC 51888 9386934 YP_003755184.1 CDS Hden_1049 NC_014313.1 1097844 1099070 R PFAM: HI0933 family protein; KEGG: rpc:RPC_3087 HI0933-like protein; hypothetical protein complement(1097844..1099070) Hyphomicrobium denitrificans ATCC 51888 9386935 YP_003755185.1 CDS Hden_1050 NC_014313.1 1099104 1099364 R hypothetical protein complement(1099104..1099364) Hyphomicrobium denitrificans ATCC 51888 9386936 YP_003755186.1 CDS Hden_1051 NC_014313.1 1099810 1100409 D manually curated; PFAM: Cold-shock protein DNA-binding; KEGG: rpc:RPC_2791 cold-shock DNA-binding domain-containing protein; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1099810..1100409 Hyphomicrobium denitrificans ATCC 51888 9386937 YP_003755187.1 CDS Hden_1052 NC_014313.1 1100421 1100948 D PFAM: protein of unknown function DUF192; KEGG: rpt:Rpal_2802 protein of unknown function DUF192; hypothetical protein 1100421..1100948 Hyphomicrobium denitrificans ATCC 51888 9386938 YP_003755188.1 CDS Hden_1053 NC_014313.1 1100984 1102045 R KEGG: dgr:Dgri_GH10507 GH10507 gene product from transcript GH10507-RA; hypothetical protein complement(1100984..1102045) Hyphomicrobium denitrificans ATCC 51888 9386939 YP_003755189.1 CDS Hden_1054 NC_014313.1 1102481 1102837 R PFAM: cytochrome C class I; KEGG: rpb:RPB_1376 cytochrome c, class I; cytochrome C class I complement(1102481..1102837) Hyphomicrobium denitrificans ATCC 51888 9386941 YP_003755190.1 CDS Hden_1055 NC_014313.1 1102933 1103337 D KEGG: bra:BRADO5328 cytochrome C-552 precursor (cytochrome C552); hypothetical protein 1102933..1103337 Hyphomicrobium denitrificans ATCC 51888 9386942 YP_003755191.1 CDS Hden_1056 NC_014313.1 1103584 1104597 D KEGG: rsk:RSKD131_1070 hypothetical protein; hypothetical protein 1103584..1104597 Hyphomicrobium denitrificans ATCC 51888 9386943 YP_003755192.1 CDS Hden_1057 NC_014313.1 1104833 1105912 D KEGG: rsk:RSKD131_1067 hypothetical protein; hypothetical protein 1104833..1105912 Hyphomicrobium denitrificans ATCC 51888 9386944 YP_003755193.1 CDS Hden_1058 NC_014313.1 1106254 1107894 D PFAM: major facilitator superfamily MFS_1; KEGG: msl:Msil_0111 major facilitator superfamily MFS_1; major facilitator superfamily protein 1106254..1107894 Hyphomicrobium denitrificans ATCC 51888 9386946 YP_003755194.1 CDS Hden_1059 NC_014313.1 1107992 1108297 R PFAM: ETC complex I subunit conserved region; KEGG: pla:Plav_2976 ETC complex I subunit region; ETC complex I subunit conserved region complement(1107992..1108297) Hyphomicrobium denitrificans ATCC 51888 9386947 YP_003755195.1 CDS Hden_1060 NC_014313.1 1108592 1109188 D PFAM: uracil-DNA glycosylase superfamily; KEGG: reh:H16_B1845 uracil-DNA glycosylase; uracil-DNA glycosylase superfamily protein 1108592..1109188 Hyphomicrobium denitrificans ATCC 51888 9386948 YP_003755196.1 CDS Hden_1061 NC_014313.1 1109217 1109588 D PFAM: protein of unknown function DUF488; KEGG: bmr:BMI_II475 hypothetical protein; hypothetical protein 1109217..1109588 Hyphomicrobium denitrificans ATCC 51888 9386949 YP_003755197.1 CDS Hden_1062 NC_014313.1 1109574 1110416 R KEGG: pna:Pnap_2627 ethanolamine ammonia-lyase small subunit; PFAM: ethanolamine ammonia-lyase light chain; ethanolamine ammonia-lyase complement(1109574..1110416) Hyphomicrobium denitrificans ATCC 51888 9386950 YP_003755198.1 CDS Hden_1063 NC_014313.1 1110431 1111819 R KEGG: pst:PSPTO_0727 ethanolamine ammonia-lyase, heavy subunit; PFAM: ethanolamine ammonia lyase large subunit; ethanolamine ammonia-lyase complement(1110431..1111819) Hyphomicrobium denitrificans ATCC 51888 9386951 YP_003755199.1 CDS Hden_1064 NC_014313.1 1111852 1113261 R KEGG: pen:PSEEN0633 transporter; TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; ethanolamine transporter complement(1111852..1113261) Hyphomicrobium denitrificans ATCC 51888 9386952 YP_003755200.1 CDS Hden_1065 NC_014313.1 1113532 1114545 D KEGG: mei:Msip34_0961 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 1113532..1114545 Hyphomicrobium denitrificans ATCC 51888 9386953 YP_003755201.1 CDS Hden_1066 NC_014313.1 1114742 1117003 D TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; hypothetical protein; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: rfr:Rfer_4387 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1114742..1117003 Hyphomicrobium denitrificans ATCC 51888 9386954 YP_003755202.1 CDS Hden_1067 NC_014313.1 1117168 1117362 D hypothetical protein 1117168..1117362 Hyphomicrobium denitrificans ATCC 51888 9386955 YP_003755203.1 CDS Hden_1068 NC_014313.1 1117486 1118385 D KEGG: sjp:SJA_C1-12890 Ku protein; TIGRFAM: Ku protein; PFAM: Ku domain protein; Ku protein 1117486..1118385 Hyphomicrobium denitrificans ATCC 51888 9386956 YP_003755204.1 CDS Hden_1069 NC_014313.1 1118404 1119474 R manually curated; TIGRFAM: DNA polymerase LigD, ligase domain protein; KEGG: azc:AZC_1006 ATP-dependent DNA ligase; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA polymerase LigD, ligase domain-containing protein complement(1118404..1119474) Hyphomicrobium denitrificans ATCC 51888 9386957 YP_003755205.1 CDS Hden_1070 NC_014313.1 1119483 1121171 R KEGG: pzu:PHZ_p0051 ATP-dependent DNA ligase; TIGRFAM: DNA polymerase LigD, polymerase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; PFAM: DNA primase small subunit; DNA polymerase LigD, polymerase domain-containing protein complement(1119483..1121171) Hyphomicrobium denitrificans ATCC 51888 9386958 YP_003755206.1 CDS Hden_1071 NC_014313.1 1121377 1121712 R KEGG: ngk:NGK_0409 FolC protein; hypothetical protein complement(1121377..1121712) Hyphomicrobium denitrificans ATCC 51888 9386959 YP_003755207.1 CDS Hden_1072 NC_014313.1 1121785 1122015 D KEGG: mlo:msl1799 hypothetical protein; hypothetical protein 1121785..1122015 Hyphomicrobium denitrificans ATCC 51888 9386960 YP_003755208.1 CDS Hden_1073 NC_014313.1 1122031 1123323 R PFAM: natural resistance-associated macrophage protein; KEGG: bbt:BBta_7276 manganese transporter; natural resistance-associated macrophage protein complement(1122031..1123323) Hyphomicrobium denitrificans ATCC 51888 9386961 YP_003755209.1 CDS Hden_1074 NC_014313.1 1123488 1124036 D KEGG: rpe:RPE_2634 hypothetical protein; hypothetical protein 1123488..1124036 Hyphomicrobium denitrificans ATCC 51888 9386962 YP_003755210.1 CDS Hden_1075 NC_014313.1 1124120 1124446 R KEGG: lrl:LC705_01953 predicted ORF; hypothetical protein complement(1124120..1124446) Hyphomicrobium denitrificans ATCC 51888 9386963 YP_003755211.1 CDS Hden_1076 NC_014313.1 1124626 1124922 D KEGG: mno:Mnod_2210 ETC complex I subunit conserved region; hypothetical protein 1124626..1124922 Hyphomicrobium denitrificans ATCC 51888 9386964 YP_003755212.1 CDS Hden_1077 NC_014313.1 1125008 1125373 R PFAM: PRC-barrel domain protein; KEGG: bja:blr2603 hypothetical protein; PRC-barrel domain-containing protein complement(1125008..1125373) Hyphomicrobium denitrificans ATCC 51888 9386965 YP_003755213.1 CDS Hden_1078 NC_014313.1 1125457 1125909 R PFAM: PRC-barrel domain protein; KEGG: xau:Xaut_2027 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein complement(1125457..1125909) Hyphomicrobium denitrificans ATCC 51888 9386966 YP_003755214.1 CDS Hden_1079 NC_014313.1 1126131 1127117 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: smd:Smed_5297 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1126131..1127117 Hyphomicrobium denitrificans ATCC 51888 9386967 YP_003755215.1 CDS Hden_1080 NC_014313.1 1127497 1127628 D hypothetical protein 1127497..1127628 Hyphomicrobium denitrificans ATCC 51888 9386968 YP_003755216.1 CDS Hden_1081 NC_014313.1 1128054 1129847 D KEGG: azc:AZC_0439 hypothetical protein; manually curated; PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein 1128054..1129847 Hyphomicrobium denitrificans ATCC 51888 9386970 YP_003755217.1 CDS Hden_1082 NC_014313.1 1129860 1131044 R KEGG: mrd:Mrad2831_2165 cystathionine beta-lyase; TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; cystathionine beta-lyase complement(1129860..1131044) Hyphomicrobium denitrificans ATCC 51888 9386971 YP_003755218.1 CDS Hden_1083 NC_014313.1 1131245 1132279 D KEGG: msl:Msil_1705 cationic amino acid ABC transporter periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1131245..1132279 Hyphomicrobium denitrificans ATCC 51888 9386972 YP_003755219.1 CDS Hden_1084 NC_014313.1 1132333 1132866 D KEGG: amr:AM1_6086 TPR repeat-containing transcriptional regulator LuxR; hypothetical protein 1132333..1132866 Hyphomicrobium denitrificans ATCC 51888 9386973 YP_003755220.1 CDS Hden_1085 NC_014313.1 1132853 1133914 R KEGG: rhi:NGR_c12630 hypothetical protein; hypothetical protein complement(1132853..1133914) Hyphomicrobium denitrificans ATCC 51888 9386974 YP_003755221.1 CDS Hden_1086 NC_014313.1 1133986 1135902 R KEGG: mlo:mlr6511 hypothetical protein; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A complement(1133986..1135902) Hyphomicrobium denitrificans ATCC 51888 9386975 YP_003755222.1 CDS Hden_1087 NC_014313.1 1135995 1136570 D PFAM: nitroreductase; KEGG: rpd:RPD_3262 nitroreductase; nitroreductase 1135995..1136570 Hyphomicrobium denitrificans ATCC 51888 9386976 YP_003755223.1 CDS Hden_1088 NC_014313.1 1136978 1137760 R PFAM: ATP-NAD/AcoX kinase; KEGG: pla:Plav_2701 NAD(+) kinase; ATP-NAD/AcoX kinase complement(1136978..1137760) Hyphomicrobium denitrificans ATCC 51888 9386977 YP_003755224.1 CDS Hden_1089 NC_014313.1 1137884 1138189 D PFAM: CutA1 divalent ion tolerance protein; KEGG: mdi:METDI0519 copper binding protein, copper sensitivity; CutA1 divalent ion tolerance protein 1137884..1138189 Hyphomicrobium denitrificans ATCC 51888 9386978 YP_003755225.1 CDS Hden_1090 NC_014313.1 1138215 1139330 R KEGG: bra:BRADO2751 hypothetical protein; hypothetical protein complement(1138215..1139330) Hyphomicrobium denitrificans ATCC 51888 9386979 YP_003755226.1 CDS Hden_1091 NC_014313.1 1140144 1141472 D KEGG: bbt:BBta_0489 hypothetical protein; hypothetical protein 1140144..1141472 Hyphomicrobium denitrificans ATCC 51888 9386980 YP_003755227.1 CDS Hden_1092 NC_014313.1 1141621 1143789 R KEGG: pla:Plav_0844 oligopeptidase B; PFAM: peptidase S9A prolyl oligopeptidase domain protein beta-propeller; peptidase S9 prolyl oligopeptidase active site domain protein; oligopeptidase B complement(1141621..1143789) Hyphomicrobium denitrificans ATCC 51888 9386981 YP_003755228.1 CDS Hden_1093 NC_014313.1 1144130 1144531 D PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 transcriptional regulator; MucR family transcriptional regulator 1144130..1144531 Hyphomicrobium denitrificans ATCC 51888 9386982 YP_003755229.1 CDS Hden_1094 NC_014313.1 1145120 1145521 D KEGG: hba:Hbal_1230 chromosomal replication initiator DnaA domain; PFAM: replication initiation factor DnaA; SMART: replication initiation factor DnaA; replication initiation factor DnaA protein 1145120..1145521 Hyphomicrobium denitrificans ATCC 51888 9386983 YP_003755230.1 CDS Hden_1095 NC_014313.1 1145563 1146135 D KEGG: nwi:Nwi_2226 DNA replication initiation ATPase; DNA replication initiation ATPase 1145563..1146135 Hyphomicrobium denitrificans ATCC 51888 9386984 YP_003755231.1 CDS Hden_1096 NC_014313.1 1146136 1146564 R PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 SufE-like protein; Fe-S metabolism associated SufE complement(1146136..1146564) Hyphomicrobium denitrificans ATCC 51888 9386985 YP_003755232.1 CDS Hden_1097 NC_014313.1 1146647 1147024 R KEGG: bra:BRADO2707 hypothetical protein; hypothetical protein complement(1146647..1147024) Hyphomicrobium denitrificans ATCC 51888 9386986 YP_003755233.1 CDS Hden_1098 NC_014313.1 1147271 1147999 D PFAM: peptidoglycan-binding protein; KEGG: azc:AZC_1094 hypothetical protein; peptidoglycan-binding protein 1147271..1147999 Hyphomicrobium denitrificans ATCC 51888 9386987 YP_003755234.1 CDS Hden_1099 NC_014313.1 1148033 1148377 D PFAM: protein of unknown function DUF1491; KEGG: xau:Xaut_1408 hypothetical protein; hypothetical protein 1148033..1148377 Hyphomicrobium denitrificans ATCC 51888 9386988 YP_003755235.1 CDS Hden_1100 NC_014313.1 1148585 1148779 D KEGG: hmg:100207741 hypothetical protein LOC100207741; hypothetical protein 1148585..1148779 Hyphomicrobium denitrificans ATCC 51888 9386989 YP_003755236.1 CDS Hden_1101 NC_014313.1 1148798 1149355 R KEGG: nwi:Nwi_1148 hypothetical protein; hypothetical protein complement(1148798..1149355) Hyphomicrobium denitrificans ATCC 51888 9386990 YP_003755237.1 CDS Hden_1102 NC_014313.1 1149352 1150008 R PFAM: protein of unknown function DUF1214; KEGG: oca:OCAR_6618 hypothetical protein; hypothetical protein complement(1149352..1150008) Hyphomicrobium denitrificans ATCC 51888 9386991 YP_003755238.1 CDS Hden_1103 NC_014313.1 1150021 1152300 R TIGRFAM: penicillin-binding protein, 1A family; KEGG: bid:Bind_1627 1A family penicillin-binding protein; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein, 1A family complement(1150021..1152300) Hyphomicrobium denitrificans ATCC 51888 9386992 YP_003755239.1 CDS Hden_1104 NC_014313.1 1152504 1153046 D PFAM: protein of unknown function UPF0153; KEGG: rhi:NGR_c07710 hypothetical protein; hypothetical protein 1152504..1153046 Hyphomicrobium denitrificans ATCC 51888 9386993 YP_003755240.1 CDS Hden_1105 NC_014313.1 1153615 1155117 D PFAM: protein of unknown function DUF264; KEGG: azc:AZC_1105 hypothetical protein; hypothetical protein 1153615..1155117 Hyphomicrobium denitrificans ATCC 51888 9386994 YP_003755241.1 CDS Hden_1106 NC_014313.1 1155302 1157329 D KEGG: pla:Plav_0903 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, HK97 family 1155302..1157329 Hyphomicrobium denitrificans ATCC 51888 9386995 YP_003755242.1 CDS Hden_1107 NC_014313.1 1157351 1157740 D KEGG: syd:Syncc9605_0583 signal peptide peptidase A; hypothetical protein 1157351..1157740 Hyphomicrobium denitrificans ATCC 51888 9386996 YP_003755243.1 CDS Hden_1108 NC_014313.1 1157992 1158312 D KEGG: swd:Swoo_3382 hypothetical protein; hypothetical protein 1157992..1158312 Hyphomicrobium denitrificans ATCC 51888 9386997 YP_003755244.1 CDS Hden_1109 NC_014313.1 1158560 1158979 D KEGG: acr:Acry_1960 HAD family hydrolase; hypothetical protein 1158560..1158979 Hyphomicrobium denitrificans ATCC 51888 9386998 YP_003755245.1 CDS Hden_1110 NC_014313.1 1159144 1159848 D KEGG: pla:Plav_0905 HK97 family phage prohead protease; TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; phage prohead protease HK97 family 1159144..1159848 Hyphomicrobium denitrificans ATCC 51888 9386999 YP_003755246.1 CDS Hden_1111 NC_014313.1 1160022 1161263 D KEGG: pla:Plav_0906 HK97 family phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; phage major capsid protein, HK97 family 1160022..1161263 Hyphomicrobium denitrificans ATCC 51888 9387000 YP_003755247.1 CDS Hden_1112 NC_014313.1 1161520 1162095 D KEGG: pla:Plav_0908 phiE125 gp8 hypothetical protein; phiE125 gp8 hypothetical protein 1161520..1162095 Hyphomicrobium denitrificans ATCC 51888 9387001 YP_003755248.1 CDS Hden_1113 NC_014313.1 1162092 1162424 D KEGG: aap:NT05HA_0498 phage head-tail adaptor, TIGRFAM: phage head-tail adaptor; PFAM: head-tail adaptor protein; phage head-tail adaptor 1162092..1162424 Hyphomicrobium denitrificans ATCC 51888 9387002 YP_003755249.1 CDS Hden_1114 NC_014313.1 1162421 1162591 D KEGG: scl:sce6510 ExbD/TolR-like translocation protein; ExbD/TolR-like translocation protein 1162421..1162591 Hyphomicrobium denitrificans ATCC 51888 9387003 YP_003755250.1 CDS Hden_1115 NC_014313.1 1162591 1163004 D KEGG: xau:Xaut_3160 hypothetical protein; hypothetical protein 1162591..1163004 Hyphomicrobium denitrificans ATCC 51888 9387004 YP_003755251.1 CDS Hden_1116 NC_014313.1 1163163 1163576 D KEGG: pla:Plav_0911 TP901-1 family phage major tail protein; TIGRFAM: phage major tail protein, TP901-1 family; PFAM: Phage major tail protein, TP901-1, subfamily 1; phage major tail protein, TP901-1 family 1163163..1163576 Hyphomicrobium denitrificans ATCC 51888 9387005 YP_003755252.1 CDS Hden_1117 NC_014313.1 1163738 1164118 D KEGG: pla:Plav_0913 hypothetical protein; hypothetical protein 1163738..1164118 Hyphomicrobium denitrificans ATCC 51888 9387006 YP_003755253.1 CDS Hden_1118 NC_014313.1 1164118 1164291 D PFAM: protein of unknown function DUF2376, phage; KEGG: rpe:RPE_1919 hypothetical protein; hypothetical protein 1164118..1164291 Hyphomicrobium denitrificans ATCC 51888 9387007 YP_003755254.1 CDS Hden_1119 NC_014313.1 1164296 1164889 D KEGG: xau:Xaut_3164 gene transfer agent (GTA) orfg11; gene transfer agent (GTA) orfg11 1164296..1164889 Hyphomicrobium denitrificans ATCC 51888 9387008 YP_003755255.1 CDS Hden_1120 NC_014313.1 1164902 1165540 D PFAM: conserved hypothetical protein; KEGG: rpa:RPA1903 hypothetical protein; hypothetical protein 1164902..1165540 Hyphomicrobium denitrificans ATCC 51888 9387009 YP_003755256.1 CDS Hden_1121 NC_014313.1 1165537 1166397 D PFAM: Phage conserved hypothetical protein, gene transfer agent-like-like; KEGG: pla:Plav_0917 hypothetical protein; Phage conserved hypothetical protein, gene transfer agent-like protein 1165537..1166397 Hyphomicrobium denitrificans ATCC 51888 9387010 YP_003755257.1 CDS Hden_1122 NC_014313.1 1166401 1166850 D KEGG: nha:Nham_1425 phage cell wall peptidase, NlpC/P60; TIGRFAM: phage cell wall peptidase, NlpC/P60 family; PFAM: NLP/P60 protein; phage cell wall peptidase, NlpC/P60 family 1166401..1166850 Hyphomicrobium denitrificans ATCC 51888 9387011 YP_003755258.1 CDS Hden_1123 NC_014313.1 1166854 1170801 D KEGG: pla:Plav_0919 gene transfer agent (GTA) like protein; gene transfer agent (GTA) like protein 1166854..1170801 Hyphomicrobium denitrificans ATCC 51888 9387012 YP_003755259.1 CDS Hden_1124 NC_014313.1 1171172 1172485 D PFAM: protein of unknown function DUF847; peptidoglycan binding domain; KEGG: mch:Mchl_1579 peptidoglycan-binding protein; hypothetical protein 1171172..1172485 Hyphomicrobium denitrificans ATCC 51888 9387013 YP_003755260.1 CDS Hden_1125 NC_014313.1 1172580 1172870 D KEGG: hut:Huta_1380 hypothetical protein; hypothetical protein 1172580..1172870 Hyphomicrobium denitrificans ATCC 51888 9387014 YP_003755261.1 CDS Hden_1126 NC_014313.1 1172952 1173623 D KEGG: mes:Meso_0894 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; winged helix family two component transcriptional regulator 1172952..1173623 Hyphomicrobium denitrificans ATCC 51888 9387015 YP_003755262.1 CDS Hden_1127 NC_014313.1 1173613 1174995 D KEGG: oca:OCAR_6578 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1173613..1174995 Hyphomicrobium denitrificans ATCC 51888 9387016 YP_003755263.1 CDS Hden_1128 NC_014313.1 1175196 1175672 D PFAM: 17 kDa surface antigen; KEGG: pla:Plav_0789 17 kDa surface antigen; 17 kDa surface antigen 1175196..1175672 Hyphomicrobium denitrificans ATCC 51888 9387017 YP_003755264.1 CDS Hden_1129 NC_014313.1 1175819 1177006 D KEGG: sme:SMc02361 cytochrome C biogenesis transmembrane protein; TIGRFAM: cytochrome C biogenesis protein CcmI; SMART: Tetratricopeptide repeat; cytochrome C biogenesis protein CcmI 1175819..1177006 Hyphomicrobium denitrificans ATCC 51888 9387018 YP_003755265.1 CDS Hden_1130 NC_014313.1 1177030 1177497 D PFAM: CcmE/CycJ protein; KEGG: azc:AZC_1133 cytochrome c-type biogenesis protein; CcmE/CycJ protein 1177030..1177497 Hyphomicrobium denitrificans ATCC 51888 9387019 YP_003755266.1 CDS Hden_1131 NC_014313.1 1177510 1179492 D KEGG: sme:SMc02363 cytochrome C biogenesis transmembrane protein; TIGRFAM: cytochrome C biogenesis protein CcmF; PFAM: cytochrome C assembly protein; cytochrome C biogenesis protein CcmF 1177510..1179492 Hyphomicrobium denitrificans ATCC 51888 9387020 YP_003755267.1 CDS Hden_1132 NC_014313.1 1179499 1179969 D PFAM: cytochrome C biogenesis protein; KEGG: mrd:Mrad2831_4994 cytochrome C biogenesis protein; cytochrome C biogenesis protein 1179499..1179969 Hyphomicrobium denitrificans ATCC 51888 9387021 YP_003755268.1 CDS Hden_1133 NC_014313.1 1180132 1181724 D SMART: PDZ/DHR/GLGF domain protein; TIGRFAM: protease Do; KEGG: bja:blr3130 serine protease DO-like precursor; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1180132..1181724 Hyphomicrobium denitrificans ATCC 51888 9387022 YP_003755269.1 CDS Hden_1134 NC_014313.1 1181735 1182523 D KEGG: rpd:RPD_2012 winged helix family two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 1181735..1182523 Hyphomicrobium denitrificans ATCC 51888 9387023 YP_003755270.1 CDS Hden_1135 NC_014313.1 1182507 1183970 D KEGG: mch:Mchl_0375 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1182507..1183970 Hyphomicrobium denitrificans ATCC 51888 9387024 YP_003755271.1 CDS Hden_1136 NC_014313.1 1183957 1186929 D KEGG: pla:Plav_0946 (glutamate--ammonia-ligase) adenylyltransferase; PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 1183957..1186929 Hyphomicrobium denitrificans ATCC 51888 9387025 YP_003755272.1 CDS Hden_1137 NC_014313.1 1187068 1187685 D KEGG: pla:Plav_0951 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 1187068..1187685 Hyphomicrobium denitrificans ATCC 51888 9387026 YP_003755273.1 CDS Hden_1138 NC_014313.1 1187707 1188183 D KEGG: pla:Plav_0952 hypothetical protein; hypothetical protein 1187707..1188183 Hyphomicrobium denitrificans ATCC 51888 9387027 YP_003755274.1 CDS Hden_1139 NC_014313.1 1188180 1188698 D KEGG: bxe:Bxe_B1627 membrane-associated protein; membrane-associated protein 1188180..1188698 Hyphomicrobium denitrificans ATCC 51888 9387028 YP_003755275.1 CDS Hden_1140 NC_014313.1 1188742 1189764 R KEGG: rec:RHECIAT_CH0001392 probable two-component sensor histidine kinase protein; PFAM: histidine kinase A domain protein; SMART: histidine kinase A domain protein; histidine kinase A domain-containing protein complement(1188742..1189764) Hyphomicrobium denitrificans ATCC 51888 9387029 YP_003755276.1 CDS Hden_1141 NC_014313.1 1189953 1192610 R KEGG: xau:Xaut_4749 aminopeptidase N; TIGRFAM: aminopeptidase N; PFAM: peptidase M1 membrane alanine aminopeptidase; aminopeptidase N complement(1189953..1192610) Hyphomicrobium denitrificans ATCC 51888 9387030 YP_003755277.1 CDS Hden_1142 NC_014313.1 1192705 1193850 R KEGG: hne:HNE_0585 carboxynorspermidine decarboxylase; TIGRFAM: carboxynorspermidine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; carboxynorspermidine decarboxylase complement(1192705..1193850) Hyphomicrobium denitrificans ATCC 51888 9387031 YP_003755278.1 CDS Hden_1143 NC_014313.1 1193905 1194342 R KEGG: rlg:Rleg_6611 drug resistance transporter EmrB/QacA subfamily; hypothetical protein complement(1193905..1194342) Hyphomicrobium denitrificans ATCC 51888 9387032 YP_003755279.1 CDS Hden_1144 NC_014313.1 1194342 1195556 R PFAM: saccharopine dehydrogenase; KEGG: hne:HNE_0588 saccharopine dehydrogenase (NAD+, L-lysine forming); saccharopine dehydrogenase complement(1194342..1195556) Hyphomicrobium denitrificans ATCC 51888 9387033 YP_003755280.1 CDS Hden_1145 NC_014313.1 1195731 1196273 R PFAM: cytochrome C class I; KEGG: mpt:Mpe_A2087 sulfite oxidase cytochrome subunit; cytochrome C class I complement(1195731..1196273) Hyphomicrobium denitrificans ATCC 51888 9387034 YP_003755281.1 CDS Hden_1146 NC_014313.1 1196260 1197558 R PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: mpt:Mpe_A2086 sulfite oxidase SoxC; oxidoreductase molybdopterin binding protein complement(1196260..1197558) Hyphomicrobium denitrificans ATCC 51888 9387035 YP_003755282.1 CDS Hden_1147 NC_014313.1 1197577 1198392 R PFAM: Sulphur oxidation protein SoxZ; KEGG: mno:Mnod_5984 sulphur oxidation protein SoxZ; sulfur oxidation protein SoxZ complement(1197577..1198392) Hyphomicrobium denitrificans ATCC 51888 9387036 YP_003755283.1 CDS Hden_1148 NC_014313.1 1198582 1199229 R PFAM: regulatory protein TetR; KEGG: mlo:mlr7359 transcriptional regulator; TetR family transcriptional regulator complement(1198582..1199229) Hyphomicrobium denitrificans ATCC 51888 9387037 YP_003755284.1 CDS Hden_1149 NC_014313.1 1199245 1200648 D KEGG: azc:AZC_3911 secretion protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 1199245..1200648 Hyphomicrobium denitrificans ATCC 51888 9387038 YP_003755285.1 CDS Hden_1150 NC_014313.1 1200662 1203826 D KEGG: azc:AZC_3910 hydrophobe/amphiphile efflux-1; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 1200662..1203826 Hyphomicrobium denitrificans ATCC 51888 9387039 YP_003755286.1 CDS Hden_1151 NC_014313.1 1203952 1206408 D KEGG: bid:Bind_0441 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein 1203952..1206408 Hyphomicrobium denitrificans ATCC 51888 9387040 YP_003755287.1 CDS Hden_1152 NC_014313.1 1206412 1207530 R PFAM: Extensin family protein; KEGG: eli:ELI_05395 hypothetical protein; Extensin family protein complement(1206412..1207530) Hyphomicrobium denitrificans ATCC 51888 9387041 YP_003755288.1 CDS Hden_1153 NC_014313.1 1207731 1208711 R manually curated; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: mch:Mchl_0534 transcriptional regulator, AraC family; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator complement(1207731..1208711) Hyphomicrobium denitrificans ATCC 51888 9387042 YP_003755289.1 CDS Hden_1154 NC_014313.1 1208875 1209315 R KEGG: pla:Plav_1409 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator complement(1208875..1209315) Hyphomicrobium denitrificans ATCC 51888 9387043 YP_003755290.1 CDS Hden_1155 NC_014313.1 1209768 1211699 D KEGG: bph:Bphy_6874 hypothetical protein; hypothetical protein 1209768..1211699 Hyphomicrobium denitrificans ATCC 51888 9387044 YP_003755291.1 CDS Hden_1156 NC_014313.1 1211731 1212033 R KEGG: nfi:NFIA_054910 SNF2 family helicase/ATPase; hypothetical protein complement(1211731..1212033) Hyphomicrobium denitrificans ATCC 51888 9387045 YP_003755292.1 CDS Hden_1157 NC_014313.1 1212317 1212481 D hypothetical protein 1212317..1212481 Hyphomicrobium denitrificans ATCC 51888 9387046 YP_003755293.1 CDS Hden_1158 NC_014313.1 1212478 1212597 D hypothetical protein 1212478..1212597 Hyphomicrobium denitrificans ATCC 51888 9387047 YP_003755294.1 CDS Hden_1159 NC_014313.1 1212681 1213817 R PFAM: FAD dependent oxidoreductase; KEGG: bpt:Bpet0858 hypothetical protein; FAD dependent oxidoreductase complement(1212681..1213817) Hyphomicrobium denitrificans ATCC 51888 9387048 YP_003755295.1 CDS Hden_1160 NC_014313.1 1214079 1215383 D KEGG: rsp:RSP_3313 phage integrase family protein; manually curated; PFAM: integrase family protein; integrase family protein 1214079..1215383 Hyphomicrobium denitrificans ATCC 51888 9387049 YP_003755296.1 CDS Hden_1161 NC_014313.1 1215439 1215771 R KEGG: cyn:Cyan7425_1808 XRE family plasmid maintenance system antidote protein; hypothetical protein complement(1215439..1215771) Hyphomicrobium denitrificans ATCC 51888 9387050 YP_003755297.1 CDS Hden_1162 NC_014313.1 1215791 1216147 R KEGG: vpa:VPA0763 sensor kinase CitA; hypothetical protein complement(1215791..1216147) Hyphomicrobium denitrificans ATCC 51888 9387051 YP_003755298.1 CDS Hden_1163 NC_014313.1 1216151 1216372 R KEGG: ath:AT3G46850 subtilase family protein; hypothetical protein complement(1216151..1216372) Hyphomicrobium denitrificans ATCC 51888 9387052 YP_003755299.1 CDS Hden_1164 NC_014313.1 1216369 1216620 R TIGRFAM: restriction alleviation protein, Lar family; KEGG: rsq:Rsph17025_1730 hypothetical protein; restriction alleviation protein, Lar family complement(1216369..1216620) Hyphomicrobium denitrificans ATCC 51888 9387053 YP_003755300.1 CDS Hden_1166 NC_014313.1 1216832 1217590 R KEGG: pag:PLES_15711 hypothetical protein; hypothetical protein complement(1216832..1217590) Hyphomicrobium denitrificans ATCC 51888 9387055 YP_003755301.1 CDS Hden_1167 NC_014313.1 1217593 1218057 R KEGG: nve:NEMVE_v1g92522 hypothetical protein; hypothetical protein complement(1217593..1218057) Hyphomicrobium denitrificans ATCC 51888 9387056 YP_003755302.1 CDS Hden_1168 NC_014313.1 1218054 1218236 R hypothetical protein complement(1218054..1218236) Hyphomicrobium denitrificans ATCC 51888 9387057 YP_003755303.1 CDS Hden_1169 NC_014313.1 1218233 1218451 R KEGG: ttr:Tter_2322 transcriptional regulator, TrmB; hypothetical protein complement(1218233..1218451) Hyphomicrobium denitrificans ATCC 51888 9387058 YP_003755304.1 CDS Hden_1170 NC_014313.1 1218451 1218651 R KEGG: hypothetical protein; hypothetical protein complement(1218451..1218651) Hyphomicrobium denitrificans ATCC 51888 9387059 YP_003755305.1 CDS Hden_1171 NC_014313.1 1218809 1219285 R KEGG: vha:VIBHAR_01963 hypothetical protein; hypothetical protein complement(1218809..1219285) Hyphomicrobium denitrificans ATCC 51888 9387060 YP_003755306.1 CDS Hden_1172 NC_014313.1 1219288 1219764 R KEGG: oca:OCAR_5559 hypothetical protein; hypothetical protein complement(1219288..1219764) Hyphomicrobium denitrificans ATCC 51888 9387061 YP_003755307.1 CDS Hden_1173 NC_014313.1 1220036 1220656 R KEGG: swi:Swit_4824 phage repressor; hypothetical protein complement(1220036..1220656) Hyphomicrobium denitrificans ATCC 51888 9387062 YP_003755308.1 CDS Hden_1174 NC_014313.1 1220754 1221005 D KEGG: nwi:Nwi_2379 hypothetical protein; hypothetical protein 1220754..1221005 Hyphomicrobium denitrificans ATCC 51888 9387063 YP_003755309.1 CDS Hden_1175 NC_014313.1 1221020 1221913 D KEGG: ssl:SS1G_10932 hypothetical protein; hypothetical protein 1221020..1221913 Hyphomicrobium denitrificans ATCC 51888 9387064 YP_003755310.1 CDS Hden_1176 NC_014313.1 1222153 1222977 D KEGG: mch:Mchl_0002 chromosomal replication initiation protein; hypothetical protein 1222153..1222977 Hyphomicrobium denitrificans ATCC 51888 9387065 YP_003755311.1 CDS Hden_1177 NC_014313.1 1222974 1223381 D KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases; chemotaxis protein CheA 1222974..1223381 Hyphomicrobium denitrificans ATCC 51888 9387066 YP_003755312.1 CDS Hden_1178 NC_014313.1 1223382 1223534 D hypothetical protein 1223382..1223534 Hyphomicrobium denitrificans ATCC 51888 9387067 YP_003755313.1 CDS Hden_1179 NC_014313.1 1223531 1224298 D KEGG: mno:Mnod_6985 hypothetical protein; hypothetical protein 1223531..1224298 Hyphomicrobium denitrificans ATCC 51888 9387068 YP_003755314.1 CDS Hden_1180 NC_014313.1 1224295 1224648 D KEGG: pfs:pQBR0370 hypothetical protein; hypothetical protein 1224295..1224648 Hyphomicrobium denitrificans ATCC 51888 9387069 YP_003755315.1 CDS Hden_1181 NC_014313.1 1224645 1226399 D SMART: DEAD-like helicase; KEGG: pfs:pQBR0371 helicase; DEAD-like helicase 1224645..1226399 Hyphomicrobium denitrificans ATCC 51888 9387070 YP_003755316.1 CDS Hden_1182 NC_014313.1 1226410 1226637 D hypothetical protein 1226410..1226637 Hyphomicrobium denitrificans ATCC 51888 9387071 YP_003755317.1 CDS Hden_1183 NC_014313.1 1226634 1227158 D KEGG: dac:Daci_3368 hydrophobe/amphiphile efflux-1 (HAE1) family protein; hypothetical protein 1226634..1227158 Hyphomicrobium denitrificans ATCC 51888 9387072 YP_003755318.1 CDS Hden_1184 NC_014313.1 1227151 1227537 D KEGG: hne:HNE_3354 hypothetical protein; hypothetical protein 1227151..1227537 Hyphomicrobium denitrificans ATCC 51888 9387073 YP_003755319.1 CDS Hden_1185 NC_014313.1 1227547 1227882 D KEGG: cpi:Cpin_4904 asparagine synthase (glutamine-hydrolyzing); hypothetical protein 1227547..1227882 Hyphomicrobium denitrificans ATCC 51888 9387074 YP_003755320.1 CDS Hden_1186 NC_014313.1 1227882 1229036 D KEGG: bcv:Bcav_0946 transposase IS3/IS911 family protein; hypothetical protein 1227882..1229036 Hyphomicrobium denitrificans ATCC 51888 9387075 YP_003755321.1 CDS Hden_1187 NC_014313.1 1229020 1229412 D KEGG: bbt:BBta_2039 RND family mulitdrug efflux protein; hypothetical protein 1229020..1229412 Hyphomicrobium denitrificans ATCC 51888 9387076 YP_003755322.1 CDS Hden_1188 NC_014313.1 1229409 1229948 D KEGG: vvi:100256322 hypothetical protein LOC100256322; hypothetical protein 1229409..1229948 Hyphomicrobium denitrificans ATCC 51888 9387077 YP_003755323.1 CDS Hden_1189 NC_014313.1 1229945 1230826 D PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: pap:PSPA7_4452 DNA adenine methyltransferase; D12 class N6 adenine-specific DNA methyltransferase 1229945..1230826 Hyphomicrobium denitrificans ATCC 51888 9387078 YP_003755324.1 CDS Hden_1190 NC_014313.1 1230851 1231255 D KEGG: mea:Mex_1p3981 hypothetical protein; hypothetical protein 1230851..1231255 Hyphomicrobium denitrificans ATCC 51888 9387079 YP_003755325.1 CDS Hden_1191 NC_014313.1 1231259 1231405 D hypothetical protein 1231259..1231405 Hyphomicrobium denitrificans ATCC 51888 9387080 YP_003755326.1 CDS Hden_1192 NC_014313.1 1231405 1231725 D KEGG: atc:AGR_C_1668 hypothetical 12.4 KDA protein in MucR 5'region (ORF2); hypothetical protein 1231405..1231725 Hyphomicrobium denitrificans ATCC 51888 9387081 YP_003755327.1 CDS Hden_1193 NC_014313.1 1231733 1231948 D KEGG: gme:Gmet_1092 polyphosphate:AMP phosphotransferase; hypothetical protein 1231733..1231948 Hyphomicrobium denitrificans ATCC 51888 9387082 YP_003755328.1 CDS Hden_1194 NC_014313.1 1232026 1232298 D KEGG: ame:413092 similar to Cdep CG31536-PA, isoform A; hypothetical protein 1232026..1232298 Hyphomicrobium denitrificans ATCC 51888 9387083 YP_003755329.1 CDS Hden_1195 NC_014313.1 1232860 1234128 R KEGG: bln:Blon_1259 allergen V5/TPX-1 family protein; hypothetical protein complement(1232860..1234128) Hyphomicrobium denitrificans ATCC 51888 9387084 YP_003755330.1 CDS Hden_1196 NC_014313.1 1234264 1234521 R KEGG: pfo:Pfl01_4702 acyltransferase 3; hypothetical protein complement(1234264..1234521) Hyphomicrobium denitrificans ATCC 51888 9387085 YP_003755331.1 CDS Hden_1197 NC_014313.1 1234532 1234747 R KEGG: pha:PSHAa1748 chondroitin AC/alginate lyase; hypothetical protein complement(1234532..1234747) Hyphomicrobium denitrificans ATCC 51888 9387086 YP_003755332.1 CDS Hden_1198 NC_014313.1 1234880 1235086 D KEGG: nha:Nham_0595 hypothetical protein; hypothetical protein 1234880..1235086 Hyphomicrobium denitrificans ATCC 51888 9387087 YP_003755333.1 CDS Hden_1199 NC_014313.1 1235125 1235301 D hypothetical protein 1235125..1235301 Hyphomicrobium denitrificans ATCC 51888 9387088 YP_003755334.1 CDS Hden_1200 NC_014313.1 1235305 1235463 D KEGG: abi:Aboo_1457 hypothetical protein; hypothetical protein 1235305..1235463 Hyphomicrobium denitrificans ATCC 51888 9387089 YP_003755335.1 CDS Hden_1201 NC_014313.1 1235460 1235717 D KEGG: der:Dere_GG14392 GG14392 gene product from transcript GG14392-RA; hypothetical protein 1235460..1235717 Hyphomicrobium denitrificans ATCC 51888 9387090 YP_003755336.1 CDS Hden_1203 NC_014313.1 1236124 1236351 D KEGG: pntA; NAD(P)(+) transhydrogenase (AB-specific), subunit alpha; hypothetical protein 1236124..1236351 Hyphomicrobium denitrificans ATCC 51888 9387092 YP_003755337.1 CDS Hden_1204 NC_014313.1 1236348 1236623 D KEGG: pjd:Pjdr2_0312 hypothetical protein; hypothetical protein 1236348..1236623 Hyphomicrobium denitrificans ATCC 51888 9387093 YP_003755338.1 CDS Hden_1205 NC_014313.1 1236727 1237008 D SMART: hypothetical protein; KEGG: cpi:Cpin_4935 5'-3' DNA helicase; plasmid maintenance system antidote protein, XRE family 1236727..1237008 Hyphomicrobium denitrificans ATCC 51888 9387094 YP_003755339.1 CDS Hden_1206 NC_014313.1 1237008 1237250 D KEGG: tbr:Tb927.4.4600 hypothetical protein; hypothetical protein 1237008..1237250 Hyphomicrobium denitrificans ATCC 51888 9387095 YP_003755340.1 CDS Hden_1207 NC_014313.1 1237916 1238056 D hypothetical protein 1237916..1238056 Hyphomicrobium denitrificans ATCC 51888 9387096 YP_003755341.1 CDS Hden_1208 NC_014313.1 1238146 1238298 D KEGG: pat:Patl_2408 hypothetical protein; hypothetical protein 1238146..1238298 Hyphomicrobium denitrificans ATCC 51888 9387097 YP_003755342.1 CDS Hden_1209 NC_014313.1 1238295 1238492 D KEGG: nve:NEMVE_v1g240452 hypothetical protein; hypothetical protein 1238295..1238492 Hyphomicrobium denitrificans ATCC 51888 9387098 YP_003755343.1 CDS Hden_1210 NC_014313.1 1238492 1238707 D hypothetical protein 1238492..1238707 Hyphomicrobium denitrificans ATCC 51888 9387099 YP_003755344.1 CDS Hden_1211 NC_014313.1 1238856 1239134 D KEGG: pop:POPTR_416019 hypothetical protein; hypothetical protein 1238856..1239134 Hyphomicrobium denitrificans ATCC 51888 9387100 YP_003755345.1 CDS Hden_1212 NC_014313.1 1239147 1240457 D PFAM: peptidoglycan-binding protein; KEGG: smb:smi_0979 hypothetical protein; peptidoglycan-binding protein 1239147..1240457 Hyphomicrobium denitrificans ATCC 51888 9387101 YP_003755346.1 CDS Hden_1213 NC_014313.1 1240506 1240643 D hypothetical protein 1240506..1240643 Hyphomicrobium denitrificans ATCC 51888 9387102 YP_003755347.1 CDS Hden_1214 NC_014313.1 1240640 1240828 D KEGG: spu:580349 similar to NM23-R7; hypothetical protein 1240640..1240828 Hyphomicrobium denitrificans ATCC 51888 9387103 YP_003755348.1 CDS Hden_1215 NC_014313.1 1240821 1241726 D KEGG: oca:OCAR_5574 hypothetical protein; hypothetical protein 1240821..1241726 Hyphomicrobium denitrificans ATCC 51888 9387104 YP_003755349.1 CDS Hden_1216 NC_014313.1 1241979 1242590 D KEGG: mgm:Mmc1_2826 hypothetical protein; hypothetical protein 1241979..1242590 Hyphomicrobium denitrificans ATCC 51888 9387105 YP_003755350.1 CDS Hden_1217 NC_014313.1 1242590 1244461 D PFAM: terminase GpA; KEGG: spe:Spro_4922 terminase GpA; terminase GpA 1242590..1244461 Hyphomicrobium denitrificans ATCC 51888 9387106 YP_003755351.1 CDS Hden_1218 NC_014313.1 1244465 1244710 D KEGG: wpi:WPa_1306 phage related protein; hypothetical protein 1244465..1244710 Hyphomicrobium denitrificans ATCC 51888 9387107 YP_003755352.1 CDS Hden_1219 NC_014313.1 1244720 1246345 D KEGG: lhk:LHK_01658 phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family; PFAM: portal protein lambda; phage portal protein, lambda family 1244720..1246345 Hyphomicrobium denitrificans ATCC 51888 9387108 YP_003755353.1 CDS Hden_1220 NC_014313.1 1246351 1247640 D PFAM: peptidase S49; KEGG: oca:OCAR_5580 peptidase S49; peptidase S49 1246351..1247640 Hyphomicrobium denitrificans ATCC 51888 9387109 YP_003755354.1 CDS Hden_1221 NC_014313.1 1247692 1248366 D KEGG: mno:Mnod_2459 hypothetical protein; hypothetical protein 1247692..1248366 Hyphomicrobium denitrificans ATCC 51888 9387110 YP_003755355.1 CDS Hden_1222 NC_014313.1 1248484 1249557 D KEGG: mno:Mnod_0593 hypothetical protein; hypothetical protein 1248484..1249557 Hyphomicrobium denitrificans ATCC 51888 9387111 YP_003755356.1 CDS Hden_1223 NC_014313.1 1249559 1249924 D KEGG: pno:SNOG_00627 hypothetical protein; hypothetical protein 1249559..1249924 Hyphomicrobium denitrificans ATCC 51888 9387112 YP_003755357.1 CDS Hden_1224 NC_014313.1 1249924 1250322 D KEGG: tit:Thit_1607 hydrogenase expression/formation protein HypD; hypothetical protein 1249924..1250322 Hyphomicrobium denitrificans ATCC 51888 9387113 YP_003755358.1 CDS Hden_1225 NC_014313.1 1250326 1251123 D KEGG: mno:Mnod_2456 hypothetical protein; hypothetical protein 1250326..1251123 Hyphomicrobium denitrificans ATCC 51888 9387114 YP_003755359.1 CDS Hden_1226 NC_014313.1 1251145 1251354 D KEGG: bpt:Bpet4417 phage-like protein; phage-like protein 1251145..1251354 Hyphomicrobium denitrificans ATCC 51888 9387115 YP_003755360.1 CDS Hden_1227 NC_014313.1 1251389 1252924 D PFAM: Mu tail sheath family protein; KEGG: bbt:BBta_6592 Mu-like prophage FluMu tail sheath protein; Mu tail sheath family protein 1251389..1252924 Hyphomicrobium denitrificans ATCC 51888 9387116 YP_003755361.1 CDS Hden_1228 NC_014313.1 1252975 1253340 D KEGG: bbt:BBta_6591 hypothetical protein; hypothetical protein 1252975..1253340 Hyphomicrobium denitrificans ATCC 51888 9387117 YP_003755362.1 CDS Hden_1229 NC_014313.1 1253379 1253783 D KEGG: xtr:780107 MKL/myocardin-like 2; hypothetical protein 1253379..1253783 Hyphomicrobium denitrificans ATCC 51888 9387118 YP_003755363.1 CDS Hden_1230 NC_014313.1 1253948 1255957 D KEGG: oan:Oant_0888 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; phage tail tape measure protein, TP901 family 1253948..1255957 Hyphomicrobium denitrificans ATCC 51888 9387119 YP_003755364.1 CDS Hden_1231 NC_014313.1 1255957 1257216 D PFAM: DNA circulation family protein; KEGG: bbt:BBta_6587 Mu-like prophage DNA circulation protein; DNA circulation family protein 1255957..1257216 Hyphomicrobium denitrificans ATCC 51888 9387120 YP_003755365.1 CDS Hden_1232 NC_014313.1 1257225 1258271 D PFAM: Mu P family protein; KEGG: bbt:BBta_6586 Mu-like prophage tail protein; Mu P family protein 1257225..1258271 Hyphomicrobium denitrificans ATCC 51888 9387121 YP_003755366.1 CDS Hden_1233 NC_014313.1 1258271 1258630 D KEGG: mno:Mnod_2446 Mu-like prophage protein GP45-like protein; Mu-like prophage protein GP45-like protein 1258271..1258630 Hyphomicrobium denitrificans ATCC 51888 9387122 YP_003755367.1 CDS Hden_1234 NC_014313.1 1258637 1258894 D manually curated; KEGG: oan:Oant_2301 PaaR repeat-containing protein; PaaR repeat-containing protein 1258637..1258894 Hyphomicrobium denitrificans ATCC 51888 9387123 YP_003755368.1 CDS Hden_1235 NC_014313.1 1258894 1259487 D PFAM: GP46 family protein; KEGG: bbt:BBta_6584 bacteriophage protein, GP46-like protein; GP46 family protein 1258894..1259487 Hyphomicrobium denitrificans ATCC 51888 9387124 YP_003755369.1 CDS Hden_1236 NC_014313.1 1259500 1260582 D PFAM: Baseplate J family protein; KEGG: bbt:BBta_6583 bacteriophage protein; Baseplate J family protein 1259500..1260582 Hyphomicrobium denitrificans ATCC 51888 9387125 YP_003755370.1 CDS Hden_1237 NC_014313.1 1260579 1261310 D PFAM: protein of unknown function DUF2313, Mu protein gp48; KEGG: bbt:BBta_6582 hypothetical protein; hypothetical protein 1260579..1261310 Hyphomicrobium denitrificans ATCC 51888 9387126 YP_003755371.1 CDS Hden_1238 NC_014313.1 1261303 1262220 D KEGG: bbt:BBta_6581 hypothetical protein; hypothetical protein 1261303..1262220 Hyphomicrobium denitrificans ATCC 51888 9387127 YP_003755372.1 CDS Hden_1239 NC_014313.1 1262225 1263535 D KEGG: azl:AZL_025360 hypothetical protein; hypothetical protein 1262225..1263535 Hyphomicrobium denitrificans ATCC 51888 9387128 YP_003755373.1 CDS Hden_1240 NC_014313.1 1263526 1264356 D KEGG: tps:THAPSDRAFT_10744 hypothetical protein; hypothetical protein 1263526..1264356 Hyphomicrobium denitrificans ATCC 51888 9387129 YP_003755374.1 CDS Hden_1241 NC_014313.1 1264399 1265277 D PFAM: protein of unknown function DUF847; peptidoglycan binding domain; KEGG: xau:Xaut_3175 hypothetical protein; hypothetical protein 1264399..1265277 Hyphomicrobium denitrificans ATCC 51888 9387130 YP_003755375.1 CDS Hden_1242 NC_014313.1 1265277 1265672 D KEGG: ecg:E2348C_2732 predicted endopeptidase; hypothetical protein 1265277..1265672 Hyphomicrobium denitrificans ATCC 51888 9387131 YP_003755376.1 CDS Hden_1243 NC_014313.1 1265669 1265962 D KEGG: pno:SNOG_15521 hypothetical protein; hypothetical protein 1265669..1265962 Hyphomicrobium denitrificans ATCC 51888 9387132 YP_003755377.1 CDS Hden_1244 NC_014313.1 1265968 1266570 D KEGG: cai:Caci_1610 pyridoxal-5'-phosphate-dependent protein subunit beta; hypothetical protein 1265968..1266570 Hyphomicrobium denitrificans ATCC 51888 9387133 YP_003755378.1 CDS Hden_1245 NC_014313.1 1266618 1266956 D KEGG: npu:Npun_R0782 MotA/TolQ/ExbB proton channel; hypothetical protein 1266618..1266956 Hyphomicrobium denitrificans ATCC 51888 9387134 YP_003755379.1 CDS Hden_1246 NC_014313.1 1267924 1268580 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: pla:Plav_3003 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1267924..1268580 Hyphomicrobium denitrificans ATCC 51888 9387137 YP_003755380.1 CDS Hden_1247 NC_014313.1 1268922 1270358 D KEGG: mpo:Mpop_5239 type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1268922..1270358 Hyphomicrobium denitrificans ATCC 51888 9387138 YP_003755381.1 CDS Hden_1248 NC_014313.1 1270644 1272140 D PFAM: protein of unknown function DUF2497; KEGG: psl:Psta_4372 hypothetical protein; hypothetical protein 1270644..1272140 Hyphomicrobium denitrificans ATCC 51888 9387139 YP_003755382.1 CDS Hden_1249 NC_014313.1 1272447 1273136 D KEGG: mrd:Mrad2831_5431 hypothetical protein; hypothetical protein 1272447..1273136 Hyphomicrobium denitrificans ATCC 51888 9387140 YP_003755383.1 CDS Hden_1250 NC_014313.1 1273258 1276077 D KEGG: pla:Plav_3006 valyl-tRNA synthetase; TIGRFAM: valyl-tRNA synthetase; valyl-tRNA synthetase 1273258..1276077 Hyphomicrobium denitrificans ATCC 51888 9387141 YP_003755384.1 CDS Hden_1251 NC_014313.1 1276227 1276928 R KEGG: abo:ABO_0848 hypothetical protein; hypothetical protein complement(1276227..1276928) Hyphomicrobium denitrificans ATCC 51888 9387142 YP_003755385.1 CDS Hden_1252 NC_014313.1 1276930 1278066 R PFAM: peptidase M48 Ste24p; KEGG: sjp:SJA_C1-07870 Zn-dependent protease; peptidase M48 Ste24p complement(1276930..1278066) Hyphomicrobium denitrificans ATCC 51888 9387143 YP_003755386.1 CDS Hden_1253 NC_014313.1 1278487 1280211 D TIGRFAM: dihydroxy-acid dehydratase; KEGG: pla:Plav_3010 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1278487..1280211 Hyphomicrobium denitrificans ATCC 51888 9387144 YP_003755387.1 CDS Hden_1254 NC_014313.1 1280198 1281310 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: mno:Mnod_5367 Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 1280198..1281310 Hyphomicrobium denitrificans ATCC 51888 9387145 YP_003755388.1 CDS Hden_1255 NC_014313.1 1281319 1282101 R KEGG: rsp:RSP_2657 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III complement(1281319..1282101) Hyphomicrobium denitrificans ATCC 51888 9387146 YP_003755389.1 CDS Hden_1256 NC_014313.1 1282151 1282474 R KEGG: mpo:Mpop_3583 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein complement(1282151..1282474) Hyphomicrobium denitrificans ATCC 51888 9387147 YP_003755390.1 CDS Hden_1257 NC_014313.1 1282591 1283820 D TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: mes:Meso_1814 deoxyguanosinetriphosphate triphosphohydrolase-like protein; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase 1282591..1283820 Hyphomicrobium denitrificans ATCC 51888 9387148 YP_003755391.1 CDS Hden_1258 NC_014313.1 1283911 1285671 D TIGRFAM: arginyl-tRNA synthetase; KEGG: nha:Nham_1758 arginyl-tRNA synthetase; arginyl-tRNA synthetase 1283911..1285671 Hyphomicrobium denitrificans ATCC 51888 9387149 YP_003755392.1 CDS Hden_1259 NC_014313.1 1285732 1287402 D PFAM: sporulation domain protein; KEGG: bbt:BBta_4421 hypothetical protein; sporulation domain-containing protein 1285732..1287402 Hyphomicrobium denitrificans ATCC 51888 9387150 YP_003755393.1 CDS Hden_1260 NC_014313.1 1287644 1288495 D KEGG: mes:Meso_1809 condensin subunit ScpA; manually curated; PFAM: chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1287644..1288495 Hyphomicrobium denitrificans ATCC 51888 9387151 YP_003755394.1 CDS Hden_1261 NC_014313.1 1288535 1289392 D KEGG: oca:OCAR_6269 chromosome segregation and condensation protein ScpB; TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; chromosome segregation and condensation protein ScpB 1288535..1289392 Hyphomicrobium denitrificans ATCC 51888 9387152 YP_003755395.1 CDS Hden_1262 NC_014313.1 1289571 1289780 D KEGG: azc:AZC_1736 twin-arginine translocation protein; TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatA/E family subunit 1289571..1289780 Hyphomicrobium denitrificans ATCC 51888 9387153 YP_003755396.1 CDS Hden_1263 NC_014313.1 1289815 1290198 D TIGRFAM: twin-arginine translocation protein, TatB subunit; KEGG: bbt:BBta_4416 sec-independent protein secretion pathway component TatB; twin-arginine translocation protein subunit TatB 1289815..1290198 Hyphomicrobium denitrificans ATCC 51888 9387154 YP_003755397.1 CDS Hden_1264 NC_014313.1 1290202 1291032 D KEGG: mno:Mnod_2185 sec-independent protein translocase, TatC subunit; TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 1290202..1291032 Hyphomicrobium denitrificans ATCC 51888 9387155 YP_003755398.1 CDS Hden_1265 NC_014313.1 1291121 1292509 D TIGRFAM: seryl-tRNA synthetase; KEGG: msl:Msil_0586 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 1291121..1292509 Hyphomicrobium denitrificans ATCC 51888 9387156 YP_003755399.1 CDS Hden_1266 NC_014313.1 1292509 1292760 D KEGG: fgr:FG09636.1 hypothetical protein; hypothetical protein 1292509..1292760 Hyphomicrobium denitrificans ATCC 51888 9387157 YP_003755400.1 CDS Hden_1267 NC_014313.1 1292762 1293526 D KEGG: pla:Plav_3031 stationary-phase survival protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1292762..1293526 Hyphomicrobium denitrificans ATCC 51888 9387158 YP_003755401.1 CDS Hden_1268 NC_014313.1 1293634 1293768 D hypothetical protein 1293634..1293768 Hyphomicrobium denitrificans ATCC 51888 9387159 YP_003755402.1 CDS Hden_1269 NC_014313.1 1293811 1295397 D KEGG: rpb:RPB_2736 peptidase M23B; PFAM: peptidase M23; peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; peptidase M23 1293811..1295397 Hyphomicrobium denitrificans ATCC 51888 9387160 YP_003755403.1 CDS Hden_1270 NC_014313.1 1295566 1296429 R PFAM: protein of unknown function DUF815; KEGG: xau:Xaut_4247 hypothetical protein; hypothetical protein complement(1295566..1296429) Hyphomicrobium denitrificans ATCC 51888 9387161 YP_003755404.1 CDS Hden_1271 NC_014313.1 1296638 1296973 D KEGG: bhe:BH05640 hypothetical protein; TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC 1296638..1296973 Hyphomicrobium denitrificans ATCC 51888 9387162 YP_003755405.1 CDS Hden_1272 NC_014313.1 1297061 1298683 D KEGG: rpe:RPE_2907 preprotein translocase subunit SecD; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD 1297061..1298683 Hyphomicrobium denitrificans ATCC 51888 9387163 YP_003755406.1 CDS Hden_1273 NC_014313.1 1298696 1299670 D KEGG: pla:Plav_3037 protein-export membrane protein SecF; TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 1298696..1299670 Hyphomicrobium denitrificans ATCC 51888 9387164 YP_003755407.1 CDS Hden_1274 NC_014313.1 1299699 1300073 D PFAM: protein of unknown function DUF498; KEGG: atc:AGR_C_2875 hypothetical protein; hypothetical protein 1299699..1300073 Hyphomicrobium denitrificans ATCC 51888 9387165 YP_003755408.1 CDS Hden_1275 NC_014313.1 1300096 1300932 D KEGG: met:M446_2494 squalene/phytoene synthase; squalene/phytoene synthase 1300096..1300932 Hyphomicrobium denitrificans ATCC 51888 9387166 YP_003755409.1 CDS Hden_1276 NC_014313.1 1300966 1303467 D KEGG: nha:Nham_1323 hypothetical protein; hypothetical protein 1300966..1303467 Hyphomicrobium denitrificans ATCC 51888 9387167 YP_003755410.1 CDS Hden_1277 NC_014313.1 1303464 1304897 R TIGRFAM: gid protein; KEGG: rpa:RPA2827 tRNA (uracil-5-)-methyltransferase Gid; PFAM: glucose-inhibited division protein A; gid protein complement(1303464..1304897) Hyphomicrobium denitrificans ATCC 51888 9387168 YP_003755411.1 CDS Hden_1278 NC_014313.1 1304963 1305676 D KEGG: rpd:RPD_3706 hypothetical protein; hypothetical protein 1304963..1305676 Hyphomicrobium denitrificans ATCC 51888 9387169 YP_003755412.1 CDS Hden_1279 NC_014313.1 1305689 1307059 R KEGG: rpc:RPC_2648 manganese transporter MntH; TIGRFAM: Mn2+/Fe2+ transporter NRAMP family; PFAM: natural resistance-associated macrophage protein; Mn2+/Fe2+ transporter NRAMP family complement(1305689..1307059) Hyphomicrobium denitrificans ATCC 51888 9387170 YP_003755413.1 CDS Hden_1280 NC_014313.1 1307408 1308505 D PFAM: protein of unknown function DUF2157, membrane; KEGG: pla:Plav_2660 membrane protein-like protein; hypothetical protein 1307408..1308505 Hyphomicrobium denitrificans ATCC 51888 9387171 YP_003755414.1 CDS Hden_1281 NC_014313.1 1308502 1309086 D KEGG: bja:bll0405 hypothetical protein; hypothetical protein 1308502..1309086 Hyphomicrobium denitrificans ATCC 51888 9387172 YP_003755415.1 CDS Hden_1282 NC_014313.1 1309150 1309497 D PFAM: endoribonuclease L-PSP; KEGG: apt:APA01_24200 translation initiation inhibitor YjgF; endoribonuclease L-PSP 1309150..1309497 Hyphomicrobium denitrificans ATCC 51888 9387173 YP_003755416.1 CDS Hden_1283 NC_014313.1 1309687 1310037 D KEGG: lel:LELG_03807 hypothetical protein; hypothetical protein 1309687..1310037 Hyphomicrobium denitrificans ATCC 51888 9387174 YP_003755417.1 CDS Hden_1284 NC_014313.1 1310107 1310988 R KEGG: hba:Hbal_0306 hypothetical protein; hypothetical protein complement(1310107..1310988) Hyphomicrobium denitrificans ATCC 51888 9387175 YP_003755418.1 CDS Hden_1285 NC_014313.1 1311250 1311675 D KEGG: met:M446_0624 VrrB protein; VrrB protein 1311250..1311675 Hyphomicrobium denitrificans ATCC 51888 9387176 YP_003755419.1 CDS Hden_1286 NC_014313.1 1311924 1314080 D TIGRFAM: V-type H(+)-translocating pyrophosphatase; KEGG: sme:SMc01780 membrane-bound proton-translocating pyrophosphatase; PFAM: inorganic H pyrophosphatase; V-type H(+)-translocating pyrophosphatase 1311924..1314080 Hyphomicrobium denitrificans ATCC 51888 9387177 YP_003755420.1 CDS Hden_1287 NC_014313.1 1314171 1314425 R KEGG: xcv:XCV2565 hypothetical protein; hypothetical protein complement(1314171..1314425) Hyphomicrobium denitrificans ATCC 51888 9387178 YP_003755421.1 CDS Hden_1288 NC_014313.1 1314550 1315038 R PFAM: SmpA/OmlA domain protein; KEGG: pla:Plav_2919 SmpA/OmlA domain-containing protein; SmpA/OmlA domain-containing protein complement(1314550..1315038) Hyphomicrobium denitrificans ATCC 51888 9387179 YP_003755422.1 CDS Hden_1289 NC_014313.1 1315191 1315745 D KEGG: xau:Xaut_4382 ubiquinol-cytochrome C chaperone; ubiquinol-cytochrome C chaperone 1315191..1315745 Hyphomicrobium denitrificans ATCC 51888 9387180 YP_003755423.1 CDS Hden_1290 NC_014313.1 1315742 1316263 D PFAM: protein of unknown function DUF177; KEGG: rpb:RPB_2648 hypothetical protein; hypothetical protein 1315742..1316263 Hyphomicrobium denitrificans ATCC 51888 9387181 YP_003755424.1 CDS Hden_1291 NC_014313.1 1316416 1317504 D KEGG: oca:OCAR_5875 glycerol-3-phosphate acyltransferase PlsX; TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; fatty acid/phospholipid synthesis protein PlsX 1316416..1317504 Hyphomicrobium denitrificans ATCC 51888 9387182 YP_003755425.1 CDS Hden_1292 NC_014313.1 1317507 1318487 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; KEGG: pla:Plav_2923 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 1317507..1318487 Hyphomicrobium denitrificans ATCC 51888 9387183 YP_003755426.1 CDS Hden_1293 NC_014313.1 1318621 1318926 D TIGRFAM: integration host factor, subunit alpha; PFAM: histone family protein DNA-binding protein; KEGG: mag:amb2355 integration host factor subunit alpha; SMART: histone family protein DNA-binding protein; integration host factor subunit alpha 1318621..1318926 Hyphomicrobium denitrificans ATCC 51888 9387184 YP_003755427.1 CDS Hden_1294 NC_014313.1 1319009 1319557 D KEGG: oca:OCAR_5878 regulatory protein, MerR; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1319009..1319557 Hyphomicrobium denitrificans ATCC 51888 9387185 YP_003755428.1 CDS Hden_1295 NC_014313.1 1319595 1320305 D KEGG: mrd:Mrad2831_0013 4'-phosphopantetheinyl transferase; phosphopantetheinyl transferase-like protein 1319595..1320305 Hyphomicrobium denitrificans ATCC 51888 9387186 YP_003755429.1 CDS Hden_1296 NC_014313.1 1320349 1321641 R KEGG: bra:BRADO2978 signal peptide; hypothetical protein complement(1320349..1321641) Hyphomicrobium denitrificans ATCC 51888 9387187 YP_003755430.1 CDS Hden_1297 NC_014313.1 1321654 1323006 R PFAM: amino acid permease-associated region; KEGG: bja:bll5532 hypothetical protein; amino acid permease-associated protein complement(1321654..1323006) Hyphomicrobium denitrificans ATCC 51888 9387188 YP_003755431.1 CDS Hden_1298 NC_014313.1 1323321 1324340 D KEGG: bra:BRADO2976 alpha/beta-hydrolase family protein; alpha/beta-hydrolase family protein 1323321..1324340 Hyphomicrobium denitrificans ATCC 51888 9387189 YP_003755432.1 CDS Hden_1299 NC_014313.1 1324878 1325279 R KEGG: cli:Clim_0620 glycine cleavage system H protein; TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage system protein H; glycine cleavage system protein H complement(1324878..1325279) Hyphomicrobium denitrificans ATCC 51888 9387191 YP_003755433.1 CDS Hden_1300 NC_014313.1 1325260 1326669 R KEGG: cdf:CD0723 carbon monoxide dehydrogenase/acetyl-CoA synthase complex, dihydrolipoyl dehydrogenase subunit; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase complement(1325260..1326669) Hyphomicrobium denitrificans ATCC 51888 9387192 YP_003755434.1 CDS Hden_1301 NC_014313.1 1326672 1327211 R PFAM: OsmC family protein; KEGG: rha:RHA1_ro08941 hypothetical protein; OsmC family protein complement(1326672..1327211) Hyphomicrobium denitrificans ATCC 51888 9387193 YP_003755435.1 CDS Hden_1302 NC_014313.1 1327315 1327971 R KEGG: vap:Vapar_2160 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator complement(1327315..1327971) Hyphomicrobium denitrificans ATCC 51888 9387194 YP_003755436.1 CDS Hden_1303 NC_014313.1 1327961 1329229 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; hypothetical protein; histidine kinase A domain protein; KEGG: app:CAP2UW1_2103 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; PAS/PAC sensor signal transduction histidine kinase complement(1327961..1329229) Hyphomicrobium denitrificans ATCC 51888 9387195 YP_003755437.1 CDS Hden_1304 NC_014313.1 1329624 1330889 D PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2904 major facilitator transporter; major facilitator superfamily protein 1329624..1330889 Hyphomicrobium denitrificans ATCC 51888 9387196 YP_003755438.1 CDS Hden_1305 NC_014313.1 1331041 1332867 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: xau:Xaut_1781 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase complement(1331041..1332867) Hyphomicrobium denitrificans ATCC 51888 9387197 YP_003755439.1 CDS Hden_1306 NC_014313.1 1333204 1333524 D KEGG: mrd:Mrad2831_4790 hypothetical protein; hypothetical protein 1333204..1333524 Hyphomicrobium denitrificans ATCC 51888 9387198 YP_003755440.1 CDS Hden_1307 NC_014313.1 1333690 1334307 D KEGG: bbt:BBta_5941 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 1333690..1334307 Hyphomicrobium denitrificans ATCC 51888 9387199 YP_003755441.1 CDS Hden_1308 NC_014313.1 1334580 1334987 D SMART: Calcium-binding EF-hand-containing protein; KEGG: mch:Mchl_2189 signal transduction protein with EFhand domain; Calcium-binding EF-hand-containing protein 1334580..1334987 Hyphomicrobium denitrificans ATCC 51888 9387200 YP_003755442.1 CDS Hden_1309 NC_014313.1 1335175 1335558 D KEGG: msl:Msil_1566 hypothetical protein; hypothetical protein 1335175..1335558 Hyphomicrobium denitrificans ATCC 51888 9387201 YP_003755443.1 CDS Hden_1310 NC_014313.1 1335578 1335913 R KEGG: pcs:Pc21g15650 Pc21g15650; hypothetical protein complement(1335578..1335913) Hyphomicrobium denitrificans ATCC 51888 9387202 YP_003755444.1 CDS Hden_1311 NC_014313.1 1335935 1336909 R PFAM: GumN family protein; KEGG: mes:Meso_3402 GumN; GumN family protein complement(1335935..1336909) Hyphomicrobium denitrificans ATCC 51888 9387203 YP_003755445.1 CDS Hden_1312 NC_014313.1 1336941 1337897 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: msl:Msil_0482 40-residue YVTN family beta-propeller repeat protein; 40-residue YVTN family beta-propeller repeat protein complement(1336941..1337897) Hyphomicrobium denitrificans ATCC 51888 9387204 YP_003755446.1 CDS Hden_1313 NC_014313.1 1337894 1338436 R PFAM: polyketide cyclase/dehydrase; KEGG: rpe:RPE_3129 MxaD protein; polyketide cyclase/dehydrase complement(1337894..1338436) Hyphomicrobium denitrificans ATCC 51888 9387205 YP_003755447.1 CDS Hden_1314 NC_014313.1 1338440 1339444 R SMART: von Willebrand factor A; KEGG: rpc:RPC_1916 von Willebrand factor, type A; von Willebrand factor A complement(1338440..1339444) Hyphomicrobium denitrificans ATCC 51888 9387206 YP_003755448.1 CDS Hden_1315 NC_014313.1 1339441 1340019 R KEGG: rpc:RPC_1915 hypothetical protein; hypothetical protein complement(1339441..1340019) Hyphomicrobium denitrificans ATCC 51888 9387207 YP_003755449.1 CDS Hden_1316 NC_014313.1 1340009 1341013 R KEGG: rpe:RPE_3132 von Willebrand factor, type A; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A complement(1340009..1341013) Hyphomicrobium denitrificans ATCC 51888 9387208 YP_003755450.1 CDS Hden_1317 NC_014313.1 1341010 1341990 R KEGG: rpc:RPC_1913 MxaA protein; MxaA protein complement(1341010..1341990) Hyphomicrobium denitrificans ATCC 51888 9387209 YP_003755451.1 CDS Hden_1318 NC_014313.1 1341990 1342847 R KEGG: rpc:RPC_1912 hypothetical protein; hypothetical protein complement(1341990..1342847) Hyphomicrobium denitrificans ATCC 51888 9387210 YP_003755452.1 CDS Hden_1319 NC_014313.1 1342844 1343902 R KEGG: rpc:RPC_1911 ATPase; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA; ATPase AAA complement(1342844..1343902) Hyphomicrobium denitrificans ATCC 51888 9387211 YP_003755453.1 CDS Hden_1320 NC_014313.1 1344061 1344366 R PFAM: methanol dehydrogenase subunit beta; KEGG: mpo:Mpop_4629 methanol dehydrogenase subunit beta; methanol dehydrogenase subunit beta complement(1344061..1344366) Hyphomicrobium denitrificans ATCC 51888 9387212 YP_003755454.1 CDS Hden_1321 NC_014313.1 1344467 1345066 R PFAM: cytochrome C class I; KEGG: mea:Mex_1p4536 cytochrome C-L precursor; cytochrome C class I complement(1344467..1345066) Hyphomicrobium denitrificans ATCC 51888 9387213 YP_003755455.1 CDS Hden_1322 NC_014313.1 1345107 1346018 R KEGG: rpc:RPC_1908 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein complement(1345107..1346018) Hyphomicrobium denitrificans ATCC 51888 9387214 YP_003755456.1 CDS Hden_1323 NC_014313.1 1346250 1348139 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: rpc:RPC_1907 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase complement(1346250..1348139) Hyphomicrobium denitrificans ATCC 51888 9387215 YP_003755457.1 CDS Hden_1324 NC_014313.1 1348520 1349020 D KEGG: mno:Mnod_8028 hypothetical protein; hypothetical protein 1348520..1349020 Hyphomicrobium denitrificans ATCC 51888 9387216 YP_003755458.1 CDS Hden_1325 NC_014313.1 1349025 1350497 D manually curated; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: rpe:RPE_3141 signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 1349025..1350497 Hyphomicrobium denitrificans ATCC 51888 9387217 YP_003755459.1 CDS Hden_1326 NC_014313.1 1350494 1351144 D KEGG: rpc:RPC_1904 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator 1350494..1351144 Hyphomicrobium denitrificans ATCC 51888 9387218 YP_003755460.1 CDS Hden_1327 NC_014313.1 1351253 1351900 D KEGG: sti:Sthe_2402 hypothetical protein; hypothetical protein 1351253..1351900 Hyphomicrobium denitrificans ATCC 51888 9387219 YP_003755461.1 CDS Hden_1328 NC_014313.1 1351958 1352407 R KEGG: app:CAP2UW1_2723 hypothetical protein; hypothetical protein complement(1351958..1352407) Hyphomicrobium denitrificans ATCC 51888 9387220 YP_003755462.1 CDS Hden_1329 NC_014313.1 1352656 1352958 D KEGG: dvl:Dvul_0821 calcium-binding EF-hand-containing protein; hypothetical protein 1352656..1352958 Hyphomicrobium denitrificans ATCC 51888 9387221 YP_003755463.1 CDS Hden_1330 NC_014313.1 1353178 1354167 D SMART: Helix-turn-helix, AraC domain; KEGG: rce:RC1_3211 AraC family transcriptional regulator protein; AraC family transcriptional regulator 1353178..1354167 Hyphomicrobium denitrificans ATCC 51888 9387222 YP_003755464.1 CDS Hden_1331 NC_014313.1 1354490 1356991 D KEGG: oca:OCAR_6490 ferrichrome-iron receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; TonB-dependent siderophore receptor 1354490..1356991 Hyphomicrobium denitrificans ATCC 51888 9387223 YP_003755465.1 CDS Hden_1332 NC_014313.1 1357003 1358151 D PFAM: PepSY-associated TM helix domain protein; KEGG: oca:OCAR_6489 PepSY-associated TM helix domain protein; PepSY-associated TM helix domain-containing protein 1357003..1358151 Hyphomicrobium denitrificans ATCC 51888 9387224 YP_003755466.1 CDS Hden_1333 NC_014313.1 1358160 1358357 D KEGG: rpt:Rpal_2080 hypothetical protein; hypothetical protein 1358160..1358357 Hyphomicrobium denitrificans ATCC 51888 9387225 YP_003755467.1 CDS Hden_1334 NC_014313.1 1358354 1359106 R KEGG: mlo:mlr1181 hypothetical protein; hypothetical protein complement(1358354..1359106) Hyphomicrobium denitrificans ATCC 51888 9387226 YP_003755468.1 CDS Hden_1335 NC_014313.1 1359090 1360397 R PFAM: Lycopene beta and epsilon cyclase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bra:BRADO4820 oxidoreductase; NAD(FAD)-dependent dehydrogenases; Lycopene beta and epsilon cyclase complement(1359090..1360397) Hyphomicrobium denitrificans ATCC 51888 9387227 YP_003755469.1 CDS Hden_1336 NC_014313.1 1360394 1361743 R KEGG: mxa:MXAN_2357 hypothetical protein; hypothetical protein complement(1360394..1361743) Hyphomicrobium denitrificans ATCC 51888 9387228 YP_003755470.1 CDS Hden_1337 NC_014313.1 1362331 1363017 D KEGG: vap:Vapar_3187 hypothetical protein; hypothetical protein 1362331..1363017 Hyphomicrobium denitrificans ATCC 51888 9387229 YP_003755471.1 CDS Hden_1338 NC_014313.1 1363014 1363970 D KEGG: rba:RB7277 hypothetical protein; hypothetical protein 1363014..1363970 Hyphomicrobium denitrificans ATCC 51888 9387230 YP_003755472.1 CDS Hden_1339 NC_014313.1 1363982 1364884 R KEGG: hypothetical protein; PFAM: transcription factor jumonji; SMART: transcription factor jumonji jmjC domain protein; transcription factor jumonji complement(1363982..1364884) Hyphomicrobium denitrificans ATCC 51888 9387231 YP_003755473.1 CDS Hden_1340 NC_014313.1 1365032 1371382 R KEGG: npu:Npun_CR072 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation protein complement(1365032..1371382) Hyphomicrobium denitrificans ATCC 51888 9387232 YP_003755474.1 CDS Hden_1341 NC_014313.1 1371387 1376270 R PFAM: beta-ketoacyl synthase ; phosphopantetheine-binding; acyl transferase; aminotransferase class-III; KEGG: npu:Npun_R6590 beta-ketoacyl synthase; beta-ketoacyl synthase complement(1371387..1376270) Hyphomicrobium denitrificans ATCC 51888 9387233 YP_003755475.1 CDS Hden_1342 NC_014313.1 1376273 1382611 R KEGG: npu:Npun_R3023 amino acid adenylation domain-containing protein; TIGRFAM: amino acid adenylation protein; non-ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; amino acid adenylation protein complement(1376273..1382611) Hyphomicrobium denitrificans ATCC 51888 9387234 YP_003755476.1 CDS Hden_1343 NC_014313.1 1382778 1383716 D KEGG: bra:BRADO4833 hypothetical protein; hypothetical protein 1382778..1383716 Hyphomicrobium denitrificans ATCC 51888 9387235 YP_003755477.1 CDS Hden_1344 NC_014313.1 1383713 1384462 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: npu:Npun_R2089 4'-phosphopantetheinyl transferase; 4'-phosphopantetheinyl transferase 1383713..1384462 Hyphomicrobium denitrificans ATCC 51888 9387236 YP_003755478.1 CDS Hden_1345 NC_014313.1 1384490 1386085 R PFAM: polysaccharide biosynthesis protein; KEGG: bra:BRADO4827 polysaccharide transporter; polysaccharide biosynthesis protein complement(1384490..1386085) Hyphomicrobium denitrificans ATCC 51888 9387237 YP_003755479.1 CDS Hden_1346 NC_014313.1 1386513 1387523 D PFAM: glycosyl transferase family 2; KEGG: bra:BRADO4817 glycosyl transferase; family 2 glycosyl transferase 1386513..1387523 Hyphomicrobium denitrificans ATCC 51888 9387238 YP_003755480.1 CDS Hden_1347 NC_014313.1 1387507 1388274 D KEGG: swi:Swit_0848 WecB/TagA/CpsF family glycosyl transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 1387507..1388274 Hyphomicrobium denitrificans ATCC 51888 9387239 YP_003755481.1 CDS Hden_1348 NC_014313.1 1388304 1389209 R KEGG: smd:Smed_4797 hypothetical protein; hypothetical protein complement(1388304..1389209) Hyphomicrobium denitrificans ATCC 51888 9387240 YP_003755482.1 CDS Hden_1349 NC_014313.1 1389337 1391283 D KEGG: bra:BRADO4816 pectin lyase-like (virulence factor-like); pectin lyase-like (virulence factor-like) 1389337..1391283 Hyphomicrobium denitrificans ATCC 51888 9387241 YP_003755483.1 CDS Hden_1350 NC_014313.1 1391339 1392745 R PFAM: O-antigen polymerase; KEGG: bra:BRADO4815 exopolysaccharide production protein (ExoQ-like); membrane protein; O-antigen polymerase complement(1391339..1392745) Hyphomicrobium denitrificans ATCC 51888 9387242 YP_003755484.1 CDS Hden_1351 NC_014313.1 1392860 1394005 R PFAM: acyltransferase 3; KEGG: psl:Psta_3769 acyltransferase 3; acyltransferase 3 complement(1392860..1394005) Hyphomicrobium denitrificans ATCC 51888 9387243 YP_003755485.1 CDS Hden_1352 NC_014313.1 1394037 1395281 R PFAM: glycosyl transferase group 1; KEGG: bra:BRADO4826 glycosyltransferase (group 1); group 1 glycosyl transferase complement(1394037..1395281) Hyphomicrobium denitrificans ATCC 51888 9387244 YP_003755486.1 CDS Hden_1353 NC_014313.1 1395391 1395519 D hypothetical protein 1395391..1395519 Hyphomicrobium denitrificans ATCC 51888 9387245 YP_003755487.1 CDS Hden_1354 NC_014313.1 1395674 1397773 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: bid:Bind_2762 lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 1395674..1397773 Hyphomicrobium denitrificans ATCC 51888 9387246 YP_003755488.1 CDS Hden_1355 NC_014313.1 1398005 1399366 D KEGG: ret:RHE_CH03235 exopolysaccharide export protein; manually curated; PFAM: polysaccharide export protein; polysaccharide export protein 1398005..1399366 Hyphomicrobium denitrificans ATCC 51888 9387247 YP_003755489.1 CDS Hden_1356 NC_014313.1 1399655 1401595 D TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: bra:BRADO4822 asparagine synthetase; PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 1399655..1401595 Hyphomicrobium denitrificans ATCC 51888 9387248 YP_003755490.1 CDS Hden_1357 NC_014313.1 1401694 1403142 R KEGG: pla:Plav_1925 sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase complement(1401694..1403142) Hyphomicrobium denitrificans ATCC 51888 9387249 YP_003755491.1 CDS Hden_1358 NC_014313.1 1403465 1404280 R KEGG: azc:AZC_0483 trehalose-6-phosphate phophatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; trehalose-phosphatase complement(1403465..1404280) Hyphomicrobium denitrificans ATCC 51888 9387250 YP_003755492.1 CDS Hden_1359 NC_014313.1 1404292 1405392 R PFAM: PfkB domain protein; KEGG: fph:Fphi_1482 ribokinase; PfkB domain-containing protein complement(1404292..1405392) Hyphomicrobium denitrificans ATCC 51888 9387251 YP_003755493.1 CDS Hden_1360 NC_014313.1 1405389 1406195 R PFAM: ROK family protein; KEGG: bph:Bphy_2399 ROK family protein; ROK family protein complement(1405389..1406195) Hyphomicrobium denitrificans ATCC 51888 9387252 YP_003755494.1 CDS Hden_1361 NC_014313.1 1406195 1407655 R KEGG: mes:Meso_1527 alpha,alpha-trehalose-phosphate synthase (UDP-forming); PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase complement(1406195..1407655) Hyphomicrobium denitrificans ATCC 51888 9387253 YP_003755495.1 CDS Hden_1362 NC_014313.1 1407979 1409052 D PFAM: HWE histidine kinase; KEGG: hne:HNE_0423 sensor histidine kinase; signal transduction histidine kinase 1407979..1409052 Hyphomicrobium denitrificans ATCC 51888 9387254 YP_003755496.1 CDS Hden_1363 NC_014313.1 1409053 1410936 R PFAM: glycoside hydrolase 15-related; KEGG: nwi:Nwi_3025 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein complement(1409053..1410936) Hyphomicrobium denitrificans ATCC 51888 9387255 YP_003755497.1 CDS Hden_1364 NC_014313.1 1411061 1412986 R TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; response regulator receiver; PAS fold-3 domain protein; KEGG: bja:bll2598 two-component response regulator; SMART: response regulator receiver; signal transduction histidine kinase complement(1411061..1412986) Hyphomicrobium denitrificans ATCC 51888 9387256 YP_003755498.1 CDS Hden_1365 NC_014313.1 1413000 1418693 R KEGG: bja:bll2599 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; GAF sensor hybrid histidine kinase complement(1413000..1418693) Hyphomicrobium denitrificans ATCC 51888 9387257 YP_003755499.1 CDS Hden_1366 NC_014313.1 1418879 1419436 R KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; ECF subfamily RNA polymerase sigma-24 subunit complement(1418879..1419436) Hyphomicrobium denitrificans ATCC 51888 9387258 YP_003755500.1 CDS Hden_1367 NC_014313.1 1419433 1419636 R KEGG: gdj:Gdia_1254 hypothetical protein; hypothetical protein complement(1419433..1419636) Hyphomicrobium denitrificans ATCC 51888 9387259 YP_003755501.1 CDS Hden_1368 NC_014313.1 1419890 1420693 D KEGG: swi:Swit_3925 two-component response regulator; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein 1419890..1420693 Hyphomicrobium denitrificans ATCC 51888 9387260 YP_003755502.1 CDS Hden_1369 NC_014313.1 1420729 1422924 R PFAM: Amylo-alpha-16-glucosidase; KEGG: nwi:Nwi_0328 amylo-alpha-1,6-glucosidase; Amylo-alpha-16-glucosidase complement(1420729..1422924) Hyphomicrobium denitrificans ATCC 51888 9387261 YP_003755503.1 CDS Hden_1370 NC_014313.1 1422994 1424088 R PFAM: glycosyl transferase group 1; KEGG: bid:Bind_1230 glycosyl transferase group 1; group 1 glycosyl transferase complement(1422994..1424088) Hyphomicrobium denitrificans ATCC 51888 9387262 YP_003755504.1 CDS Hden_1371 NC_014313.1 1424439 1425455 D KEGG: rpe:RPE_2821 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein; dipeptidyl aminopeptidase/acylaminoacyl-peptidase-like protein 1424439..1425455 Hyphomicrobium denitrificans ATCC 51888 9387263 YP_003755505.1 CDS Hden_1372 NC_014313.1 1425476 1425793 R KEGG: rpb:RPB_4114 hypothetical protein; hypothetical protein complement(1425476..1425793) Hyphomicrobium denitrificans ATCC 51888 9387264 YP_003755506.1 CDS Hden_1373 NC_014313.1 1425800 1426336 R PFAM: superoxide dismutase copper/zinc binding; KEGG: dds:Ddes_0538 superoxide dismutase copper/zinc binding; superoxide dismutase copper/zinc binding protein complement(1425800..1426336) Hyphomicrobium denitrificans ATCC 51888 9387265 YP_003755507.1 CDS Hden_1374 NC_014313.1 1426366 1426737 R KEGG: sus:acid_1393 fis family transcriptional regulator; hypothetical protein complement(1426366..1426737) Hyphomicrobium denitrificans ATCC 51888 9387266 YP_003755508.1 CDS Hden_1375 NC_014313.1 1427032 1427556 D PFAM: polyketide cyclase/dehydrase; KEGG: msl:Msil_2543 hypothetical protein; polyketide cyclase/dehydrase 1427032..1427556 Hyphomicrobium denitrificans ATCC 51888 9387267 YP_003755509.1 CDS Hden_1376 NC_014313.1 1427638 1428255 R KEGG: msl:Msil_3144 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; LuxR family transcriptional regulator complement(1427638..1428255) Hyphomicrobium denitrificans ATCC 51888 9387268 YP_003755510.1 CDS Hden_1377 NC_014313.1 1428252 1429616 R KEGG: msl:Msil_3151 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; integral membrane sensor signal transduction histidine kinase complement(1428252..1429616) Hyphomicrobium denitrificans ATCC 51888 9387269 YP_003755511.1 CDS Hden_1378 NC_014313.1 1429803 1431239 R KEGG: oan:Oant_2510 hypothetical protein; hypothetical protein complement(1429803..1431239) Hyphomicrobium denitrificans ATCC 51888 9387270 YP_003755512.1 CDS Hden_1379 NC_014313.1 1431289 1432815 R KEGG: mno:Mnod_5211 undecaprenyl-phosphate glucose phosphotransferase; TIGRFAM: undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase complement(1431289..1432815) Hyphomicrobium denitrificans ATCC 51888 9387271 YP_003755513.1 CDS Hden_1380 NC_014313.1 1432889 1434043 R PFAM: glycosyl transferase group 1; KEGG: mpo:Mpop_1808 glycosyl transferase group 1; group 1 glycosyl transferase complement(1432889..1434043) Hyphomicrobium denitrificans ATCC 51888 9387272 YP_003755514.1 CDS Hden_1381 NC_014313.1 1434098 1434772 R PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: nwi:Nwi_1414 polysaccharide export protein; polysaccharide export protein complement(1434098..1434772) Hyphomicrobium denitrificans ATCC 51888 9387273 YP_003755515.1 CDS Hden_1382 NC_014313.1 1434870 1437182 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: rpe:RPE_2845 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 1434870..1437182 Hyphomicrobium denitrificans ATCC 51888 9387274 YP_003755516.1 CDS Hden_1383 NC_014313.1 1437213 1438337 D PFAM: polysaccharide deacetylase; KEGG: pla:Plav_2994 polysaccharide deacetylase; polysaccharide deacetylase 1437213..1438337 Hyphomicrobium denitrificans ATCC 51888 9387275 YP_003755517.1 CDS Hden_1384 NC_014313.1 1438306 1438515 R KEGG: oca:OCAR_5889 hypothetical protein; hypothetical protein complement(1438306..1438515) Hyphomicrobium denitrificans ATCC 51888 9387276 YP_003755518.1 CDS Hden_1385 NC_014313.1 1438633 1439718 D PFAM: cytochrome oxidase assembly; KEGG: oan:Oant_2502 cytochrome oxidase assembly; cytochrome oxidase assembly 1438633..1439718 Hyphomicrobium denitrificans ATCC 51888 9387277 YP_003755519.1 CDS Hden_1386 NC_014313.1 1439777 1440727 R SMART: semialdehyde dehydrogenase NAD - binding; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: rpa:RPA2491 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: semialdehyde dehydrogenase NAD - binding; N-acetyl-gamma-glutamyl-phosphate reductase complement(1439777..1440727) Hyphomicrobium denitrificans ATCC 51888 9387278 YP_003755520.1 CDS Hden_1387 NC_014313.1 1440729 1441484 R PFAM: integral membrane protein TerC; KEGG: rpe:RPE_4103 integral membrane protein TerC; integral membrane protein TerC complement(1440729..1441484) Hyphomicrobium denitrificans ATCC 51888 9387279 YP_003755521.1 CDS Hden_1388 NC_014313.1 1441651 1442130 R PFAM: ribosomal protein S9; KEGG: oan:Oant_2496 30S ribosomal protein S9; 30S ribosomal protein S9 complement(1441651..1442130) Hyphomicrobium denitrificans ATCC 51888 9387280 YP_003755522.1 CDS Hden_1389 NC_014313.1 1442135 1442596 R KEGG: xau:Xaut_4344 50S ribosomal protein L13; TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; 50S ribosomal protein L13 complement(1442135..1442596) Hyphomicrobium denitrificans ATCC 51888 9387281 YP_003755523.1 CDS Hden_1390 NC_014313.1 1442819 1443364 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: xau:Xaut_3191 6-pyruvoyl tetrahydropterin synthase; hypothetical protein complement(1442819..1443364) Hyphomicrobium denitrificans ATCC 51888 9387282 YP_003755524.1 CDS Hden_1391 NC_014313.1 1443601 1444197 D KEGG: oca:OCAR_4785 exported protein of unknown function; hypothetical protein 1443601..1444197 Hyphomicrobium denitrificans ATCC 51888 9387283 YP_003755525.1 CDS Hden_1392 NC_014313.1 1444251 1445066 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: rpt:Rpal_3104 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1444251..1445066 Hyphomicrobium denitrificans ATCC 51888 9387284 YP_003755526.1 CDS Hden_1393 NC_014313.1 1445068 1445502 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dar:Daro_3011 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1445068..1445502 Hyphomicrobium denitrificans ATCC 51888 9387285 YP_003755527.1 CDS Hden_1394 NC_014313.1 1445499 1445936 D KEGG: ddc:Dd586_2991 CoA-binding protein; PFAM: CoA-binding protein; SMART: CoA-binding protein; CoA-binding protein 1445499..1445936 Hyphomicrobium denitrificans ATCC 51888 9387286 YP_003755528.1 CDS Hden_1395 NC_014313.1 1446139 1446780 D KEGG: ace:Acel_1272 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; PFAM: GTP cyclohydrolase II; GTP cyclohydrolase II 1446139..1446780 Hyphomicrobium denitrificans ATCC 51888 9387287 YP_003755529.1 CDS Hden_1396 NC_014313.1 1446934 1447449 D PFAM: GCN5-related N-acetyltransferase; KEGG: bra:BRADO4697 acetyltransferase; GCN5-like N-acetyltransferase 1446934..1447449 Hyphomicrobium denitrificans ATCC 51888 9387288 YP_003755530.1 CDS Hden_1397 NC_014313.1 1447446 1449065 D KEGG: bra:BRADO4696 alpha-isopropylmalate/homocitrate synthase family transferase; TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: LeuA allosteric (dimerisation) domain; pyruvate carboxyltransferase; 2-isopropylmalate synthase/homocitrate synthase family protein 1447446..1449065 Hyphomicrobium denitrificans ATCC 51888 9387289 YP_003755531.1 CDS Hden_1398 NC_014313.1 1449088 1449327 R KEGG: avi:Avi_2021 hypothetical protein; hypothetical protein complement(1449088..1449327) Hyphomicrobium denitrificans ATCC 51888 9387290 YP_003755532.1 CDS Hden_1399 NC_014313.1 1449412 1449735 R PFAM: Sulphur oxidation protein SoxZ; KEGG: bra:BRADO3181 sulfur oxidation protein (SoxZ); sulfur oxidation protein SoxZ complement(1449412..1449735) Hyphomicrobium denitrificans ATCC 51888 9387291 YP_003755533.1 CDS Hden_1400 NC_014313.1 1449746 1450231 R KEGG: tdn:Suden_0261 thiosulfate-binding protein SoxY; thiosulfate-binding protein SoxY complement(1449746..1450231) Hyphomicrobium denitrificans ATCC 51888 9387292 YP_003755534.1 CDS Hden_1401 NC_014313.1 1450389 1451705 D PFAM: Flavocytochrome C sulphide dehydrogenase flavin-binding; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: xau:Xaut_1514 flavocytochrome C sulphide dehydrogenase flavin-binding; Flavocytochrome C sulfide dehydrogenase flavin-binding protein 1450389..1451705 Hyphomicrobium denitrificans ATCC 51888 9387293 YP_003755535.1 CDS Hden_1402 NC_014313.1 1451944 1454445 D PFAM: protein of unknown function DUF1974; acyl-CoA dehydrogenase domain protein; KEGG: slt:Slit_1861 protein of unknown function DUF1974; hypothetical protein 1451944..1454445 Hyphomicrobium denitrificans ATCC 51888 9387294 YP_003755536.1 CDS Hden_1403 NC_014313.1 1454454 1456469 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; enoyl-CoA hydratase/isomerase; KEGG: nha:Nham_1087 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 1454454..1456469 Hyphomicrobium denitrificans ATCC 51888 9387295 YP_003755537.1 CDS Hden_1404 NC_014313.1 1456521 1457825 D KEGG: pfs:PFLU0655 thiolase; TIGRFAM: acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 1456521..1457825 Hyphomicrobium denitrificans ATCC 51888 9387296 YP_003755538.1 CDS Hden_1405 NC_014313.1 1457905 1459212 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: mlo:mll4091 fatty acid synthase, cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase 1457905..1459212 Hyphomicrobium denitrificans ATCC 51888 9387297 YP_003755539.1 CDS Hden_1406 NC_014313.1 1459239 1461020 R TIGRFAM: glucan exporter ATP-binding protein; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: atc:AGR_C_4944 beta-(1-->2)glucan export ATP-binding protein ChvA (attachment protein); SMART: ATPase AAA; glucan exporter ATP-binding protein complement(1459239..1461020) Hyphomicrobium denitrificans ATCC 51888 9387298 YP_003755540.1 CDS Hden_1407 NC_014313.1 1461235 1461840 D PFAM: cytochrome B561; KEGG: bxe:Bxe_B2745 cytochrome b561; cytochrome B561 1461235..1461840 Hyphomicrobium denitrificans ATCC 51888 9387299 YP_003755541.1 CDS Hden_1408 NC_014313.1 1461858 1462694 R KEGG: mno:Mnod_4661 hypothetical protein; hypothetical protein complement(1461858..1462694) Hyphomicrobium denitrificans ATCC 51888 9387300 YP_003755542.1 CDS Hden_1409 NC_014313.1 1462691 1463737 R PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_4662 glycosyl transferase group 1; group 1 glycosyl transferase complement(1462691..1463737) Hyphomicrobium denitrificans ATCC 51888 9387301 YP_003755543.1 CDS Hden_1410 NC_014313.1 1463730 1464134 R KEGG: azc:AZC_4167 hypothetical protein; hypothetical protein complement(1463730..1464134) Hyphomicrobium denitrificans ATCC 51888 9387302 YP_003755544.1 CDS Hden_1411 NC_014313.1 1464159 1465184 R PFAM: alcohol dehydrogenase zinc-binding domain protein; KEGG: xau:Xaut_2316 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein complement(1464159..1465184) Hyphomicrobium denitrificans ATCC 51888 9387303 YP_003755545.1 CDS Hden_1412 NC_014313.1 1465205 1467016 D KEGG: xau:Xaut_2317 glucosyltransferase MdoH; glucosyltransferase MdoH 1465205..1467016 Hyphomicrobium denitrificans ATCC 51888 9387304 YP_003755546.1 CDS Hden_1413 NC_014313.1 1467006 1467767 D TIGRFAM: methyltransferase FkbM family; KEGG: mno:Mnod_5570 methyltransferase FkbM family; FkbM family methyltransferase 1467006..1467767 Hyphomicrobium denitrificans ATCC 51888 9387305 YP_003755547.1 CDS Hden_1414 NC_014313.1 1467800 1468807 D KEGG: azc:AZC_3949 hypothetical protein; hypothetical protein 1467800..1468807 Hyphomicrobium denitrificans ATCC 51888 9387306 YP_003755548.1 CDS Hden_1415 NC_014313.1 1468836 1469789 R TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; KEGG: azc:AZC_0099 HAD-superfamily hydrolase; HAD-superfamily hydrolase-like protein complement(1468836..1469789) Hyphomicrobium denitrificans ATCC 51888 9387307 YP_003755549.1 CDS Hden_1416 NC_014313.1 1470084 1470461 D KEGG: bay:RBAM_034190 polar chromosome segregation protein; hypothetical protein 1470084..1470461 Hyphomicrobium denitrificans ATCC 51888 9387308 YP_003755550.1 CDS Hden_1417 NC_014313.1 1470548 1470964 R KEGG: mch:Mchl_4298 dihydrofolate reductase; dihydrofolate reductase complement(1470548..1470964) Hyphomicrobium denitrificans ATCC 51888 9387309 YP_003755551.1 CDS Hden_1418 NC_014313.1 1471230 1471760 D KEGG: msl:Msil_1586 cytochrome C protein; cytochrome C protein 1471230..1471760 Hyphomicrobium denitrificans ATCC 51888 9387310 YP_003755552.1 CDS Hden_1419 NC_014313.1 1471783 1473207 R PFAM: aldehyde dehydrogenase; KEGG: bid:Bind_0016 aldehyde dehydrogenase; aldehyde dehydrogenase complement(1471783..1473207) Hyphomicrobium denitrificans ATCC 51888 9387311 YP_003755553.1 CDS Hden_1420 NC_014313.1 1473515 1474753 R KEGG: pna:Pnap_3729 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(1473515..1474753) Hyphomicrobium denitrificans ATCC 51888 9387312 YP_003755554.1 CDS Hden_1421 NC_014313.1 1474734 1477379 R KEGG: mxa:MXAN_2606 sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; integral membrane sensor hybrid histidine kinase complement(1474734..1477379) Hyphomicrobium denitrificans ATCC 51888 9387313 YP_003755555.1 CDS Hden_1422 NC_014313.1 1477384 1478781 R KEGG: reh:H16_A3120 SAM-dependent methyltransferase; SAM-dependent methyltransferase complement(1477384..1478781) Hyphomicrobium denitrificans ATCC 51888 9387314 YP_003755556.1 CDS Hden_1423 NC_014313.1 1478890 1480041 R KEGG: rme:Rmet_2949 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(1478890..1480041) Hyphomicrobium denitrificans ATCC 51888 9387315 YP_003755557.1 CDS Hden_1424 NC_014313.1 1480249 1481649 R KEGG: xau:Xaut_1939 glutamate--putrescine ligase; PFAM: glutamine synthetase; glutamate--putrescine ligase complement(1480249..1481649) Hyphomicrobium denitrificans ATCC 51888 9387316 YP_003755558.1 CDS Hden_1425 NC_014313.1 1482126 1483238 D PFAM: extracellular solute-binding protein family 1; KEGG: mlo:mlr6533 ABC transporter polyamine transporter, periplasmic protein; family 1 extracellular solute-binding protein 1482126..1483238 Hyphomicrobium denitrificans ATCC 51888 9387317 YP_003755559.1 CDS Hden_1426 NC_014313.1 1483336 1484532 D TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter; transport-associated OB domain protein; KEGG: atc:AGR_C_1086 polyamine transporter PotG; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 1483336..1484532 Hyphomicrobium denitrificans ATCC 51888 9387318 YP_003755560.1 CDS Hden_1427 NC_014313.1 1484542 1485447 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mes:Meso_0165 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 1484542..1485447 Hyphomicrobium denitrificans ATCC 51888 9387319 YP_003755561.1 CDS Hden_1428 NC_014313.1 1485444 1486268 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mes:Meso_0166 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 1485444..1486268 Hyphomicrobium denitrificans ATCC 51888 9387320 YP_003755562.1 CDS Hden_1429 NC_014313.1 1486324 1487610 D PFAM: FAD dependent oxidoreductase; KEGG: sbl:Sbal_2421 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1486324..1487610 Hyphomicrobium denitrificans ATCC 51888 9387321 YP_003755563.1 CDS Hden_1430 NC_014313.1 1487893 1488534 R PFAM: protein of unknown function DUF1109; KEGG: ara:Arad_4851 hypothetical protein; hypothetical protein complement(1487893..1488534) Hyphomicrobium denitrificans ATCC 51888 9387322 YP_003755564.1 CDS Hden_1431 NC_014313.1 1488531 1489088 R manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: rpt:Rpal_2016 RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit complement(1488531..1489088) Hyphomicrobium denitrificans ATCC 51888 9387323 YP_003755565.1 CDS Hden_1432 NC_014313.1 1489221 1489607 R KEGG: rde:RD1_2328 hypothetical protein; hypothetical protein complement(1489221..1489607) Hyphomicrobium denitrificans ATCC 51888 9387324 YP_003755566.1 CDS Hden_1433 NC_014313.1 1489828 1491960 R PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: msl:Msil_2953 formate dehydrogenase; molybdopterin dinucleotide-binding region complement(1489828..1491960) Hyphomicrobium denitrificans ATCC 51888 9387325 YP_003755567.1 CDS Hden_1434 NC_014313.1 1492189 1492563 D KEGG: saz:Sama_2843 hypothetical protein; hypothetical protein 1492189..1492563 Hyphomicrobium denitrificans ATCC 51888 9387326 YP_003755568.1 CDS Hden_1435 NC_014313.1 1492635 1493705 R SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: xau:Xaut_3908 lysine 2,3-aminomutase YodO family protein; PFAM: radical SAM protein; lysine 2,3-aminomutase YodO family protein complement(1492635..1493705) Hyphomicrobium denitrificans ATCC 51888 9387327 YP_003755569.1 CDS Hden_1436 NC_014313.1 1493702 1494187 R PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mes:Meso_0968 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(1493702..1494187) Hyphomicrobium denitrificans ATCC 51888 9387328 YP_003755570.1 CDS Hden_1437 NC_014313.1 1494250 1495299 R manually curated; KEGG: cak:Caul_0762 lysine--tRNA ligase; PFAM: tRNA synthetase class II (D K and N); lysine--tRNA ligase complement(1494250..1495299) Hyphomicrobium denitrificans ATCC 51888 9387329 YP_003755571.1 CDS Hden_1438 NC_014313.1 1495454 1496023 D KEGG: xau:Xaut_2531 elongation factor P; TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; translation elongation factor P 1495454..1496023 Hyphomicrobium denitrificans ATCC 51888 9387330 YP_003755572.1 CDS Hden_1439 NC_014313.1 1496075 1497286 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: mno:Mnod_5578 molybdenum cofactor synthesis domain protein; SMART: molybdopterin binding domain; molybdenum cofactor synthesis protein complement(1496075..1497286) Hyphomicrobium denitrificans ATCC 51888 9387331 YP_003755573.1 CDS Hden_1440 NC_014313.1 1497291 1497785 R KEGG: azc:AZC_2203 molybdopterin cofactor biosynthesis protein; TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C complement(1497291..1497785) Hyphomicrobium denitrificans ATCC 51888 9387332 YP_003755574.1 CDS Hden_1441 NC_014313.1 1497782 1498585 R KEGG: xau:Xaut_4375 indole-3-glycerol-phosphate synthase; PFAM: indole-3-glycerol phosphate synthase; indole-3-glycerol-phosphate synthase complement(1497782..1498585) Hyphomicrobium denitrificans ATCC 51888 9387333 YP_003755575.1 CDS Hden_1442 NC_014313.1 1498589 1499647 R TIGRFAM: anthranilate phosphoribosyltransferase; KEGG: rpt:Rpal_3235 anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase complement(1498589..1499647) Hyphomicrobium denitrificans ATCC 51888 9387334 YP_003755576.1 CDS Hden_1443 NC_014313.1 1499650 1500246 R KEGG: xau:Xaut_4377 glutamine amidotransferase of anthranilate synthase; TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; glutamine amidotransferase complement(1499650..1500246) Hyphomicrobium denitrificans ATCC 51888 9387335 YP_003755577.1 CDS Hden_1444 NC_014313.1 1500371 1500889 R KEGG: sme:SMc03822 hypothetical protein; PFAM: phosphoglycerate mutase; SMART: phosphoglycerate mutase; phosphohistidine phosphatase SixA complement(1500371..1500889) Hyphomicrobium denitrificans ATCC 51888 9387336 YP_003755578.1 CDS Hden_1445 NC_014313.1 1501001 1501402 D KEGG: hms:HMU02670 serine transporter; hypothetical protein 1501001..1501402 Hyphomicrobium denitrificans ATCC 51888 9387337 YP_003755579.1 CDS Hden_1446 NC_014313.1 1501428 1503044 R TIGRFAM: anthranilate synthase component I; KEGG: xau:Xaut_4378 anthranilate synthase component I; PFAM: chorismate binding-like; anthranilate synthase component I domain protein; anthranilate synthase component I complement(1501428..1503044) Hyphomicrobium denitrificans ATCC 51888 9387338 YP_003755580.1 CDS Hden_1447 NC_014313.1 1503050 1504936 R KEGG: rpt:Rpal_3234 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1503050..1504936) Hyphomicrobium denitrificans ATCC 51888 9387339 YP_003755581.1 CDS Hden_1448 NC_014313.1 1505151 1505927 D TIGRFAM: triosephosphate isomerase; KEGG: pla:Plav_3166 triose-phosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 1505151..1505927 Hyphomicrobium denitrificans ATCC 51888 9387340 YP_003755582.1 CDS Hden_1449 NC_014313.1 1505927 1506568 D KEGG: pen:PSEEN0161 alginate regulatory protein AlgP; hypothetical protein 1505927..1506568 Hyphomicrobium denitrificans ATCC 51888 9387341 YP_003755583.1 CDS Hden_1450 NC_014313.1 1506565 1506711 D hypothetical protein 1506565..1506711 Hyphomicrobium denitrificans ATCC 51888 9387342 YP_003755584.1 CDS Hden_1451 NC_014313.1 1506678 1507055 D KEGG: rpe:RPE_2594 preprotein translocase subunit SecG; TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 1506678..1507055 Hyphomicrobium denitrificans ATCC 51888 9387343 YP_003755585.1 CDS Hden_1452 NC_014313.1 1507168 1507758 D KEGG: bra:BRADO1438 signal peptide; hypothetical protein 1507168..1507758 Hyphomicrobium denitrificans ATCC 51888 9387344 YP_003755586.1 CDS Hden_1453 NC_014313.1 1507869 1509497 D TIGRFAM: CTP synthase; KEGG: mes:Meso_1634 CTP synthetase; PFAM: CTP synthase-like; glutamine amidotransferase class-I; CTP synthase 1507869..1509497 Hyphomicrobium denitrificans ATCC 51888 9387345 YP_003755587.1 CDS Hden_1454 NC_014313.1 1509613 1509870 R KEGG: cytochrome b561; hypothetical protein complement(1509613..1509870) Hyphomicrobium denitrificans ATCC 51888 9387346 YP_003755588.1 CDS Hden_1455 NC_014313.1 1510357 1511280 D KEGG: rpt:Rpal_3223 2-dehydro-3-deoxyphosphooctonate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 1510357..1511280 Hyphomicrobium denitrificans ATCC 51888 9387347 YP_003755589.1 CDS Hden_1456 NC_014313.1 1511451 1511693 R KEGG: FAD linked oxidase C-terminal domain protein; hypothetical protein complement(1511451..1511693) Hyphomicrobium denitrificans ATCC 51888 9387348 YP_003755590.1 CDS Hden_1457 NC_014313.1 1512118 1512798 R KEGG: mpo:Mpop_1803 hypothetical protein; hypothetical protein complement(1512118..1512798) Hyphomicrobium denitrificans ATCC 51888 9387349 YP_003755591.1 CDS Hden_1458 NC_014313.1 1512810 1513820 R PFAM: ABC transporter; KEGG: bja:blr6191 ABC transporter permease; ABC transporter complement(1512810..1513820) Hyphomicrobium denitrificans ATCC 51888 9387350 YP_003755592.1 CDS Hden_1459 NC_014313.1 1513820 1514617 R KEGG: bbt:BBta_5947 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(1513820..1514617) Hyphomicrobium denitrificans ATCC 51888 9387351 YP_003755593.1 CDS Hden_1460 NC_014313.1 1514648 1515631 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1 heme region; aldehyde dehydrogenase; KEGG: mno:Mnod_5316 40-residue YVTN family beta-propeller repeat protein; SMART: hypothetical protein; 40-residue YVTN family beta-propeller repeat protein complement(1514648..1515631) Hyphomicrobium denitrificans ATCC 51888 9387352 YP_003755594.1 CDS Hden_1461 NC_014313.1 1515700 1516956 R KEGG: bra:BRADO5462 hypothetical protein; hypothetical protein complement(1515700..1516956) Hyphomicrobium denitrificans ATCC 51888 9387353 YP_003755595.1 CDS Hden_1462 NC_014313.1 1517319 1517825 D KEGG: met:M446_5014 hypothetical protein; hypothetical protein 1517319..1517825 Hyphomicrobium denitrificans ATCC 51888 9387354 YP_003755596.1 CDS Hden_1463 NC_014313.1 1517822 1518802 D PFAM: NMT1/THI5 like domain protein; KEGG: azl:AZL_a05750 ABC transporter substrate-binding protein; NMT1/THI5 like domain-containing protein 1517822..1518802 Hyphomicrobium denitrificans ATCC 51888 9387355 YP_003755597.1 CDS Hden_1464 NC_014313.1 1518765 1519574 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: psa:PST_2932 sulfonate ABC transporter permease protein; binding-protein-dependent transporters inner membrane component 1518765..1519574 Hyphomicrobium denitrificans ATCC 51888 9387356 YP_003755598.1 CDS Hden_1465 NC_014313.1 1519571 1520302 D KEGG: azl:AZL_a05770 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 1519571..1520302 Hyphomicrobium denitrificans ATCC 51888 9387357 YP_003755599.1 CDS Hden_1466 NC_014313.1 1520343 1521080 D PFAM: protein of unknown function DUF556; KEGG: rcu:RCOM_0113510 hypothetical protein; hypothetical protein 1520343..1521080 Hyphomicrobium denitrificans ATCC 51888 9387358 YP_003755600.1 CDS Hden_1467 NC_014313.1 1521077 1521538 D KEGG: mag:amb2297 dihydroneopterin aldolase; PFAM: dihydroneopterin aldolase; SMART: dihydroneopterin aldolase; dihydroneopterin aldolase 1521077..1521538 Hyphomicrobium denitrificans ATCC 51888 9387359 YP_003755601.1 CDS Hden_1468 NC_014313.1 1521531 1522145 D PFAM: aspartate/glutamate/uridylate kinase; KEGG: msl:Msil_2395 aspartate/glutamate/uridylate kinase; aspartate/glutamate/uridylate kinase 1521531..1522145 Hyphomicrobium denitrificans ATCC 51888 9387360 YP_003755602.1 CDS Hden_1469 NC_014313.1 1522145 1522732 D PFAM: protein of unknown function DUF447; KEGG: gbe:GbCGDNIH1_0766 hypothetical protein; hypothetical protein 1522145..1522732 Hyphomicrobium denitrificans ATCC 51888 9387361 YP_003755603.1 CDS Hden_1470 NC_014313.1 1522729 1523910 D KEGG: chu:CHU_3286 SAM-dependent methyltransferase; SAM-dependent methyltransferase 1522729..1523910 Hyphomicrobium denitrificans ATCC 51888 9387362 YP_003755604.1 CDS Hden_1471 NC_014313.1 1524037 1524318 D KEGG: mch:Mchl_2198 hypothetical protein; hypothetical protein 1524037..1524318 Hyphomicrobium denitrificans ATCC 51888 9387363 YP_003755605.1 CDS Hden_1472 NC_014313.1 1524379 1525392 R TIGRFAM: H4MPT-linked C1 transfer pathway protein; KEGG: mrd:Mrad2831_0965 H4MPT-linked C1 transfer pathway protein; H4MPT-linked C1 transfer pathway protein complement(1524379..1525392) Hyphomicrobium denitrificans ATCC 51888 9387364 YP_003755606.1 CDS Hden_1473 NC_014313.1 1525451 1526158 D PFAM: histidine biosynthesis protein; KEGG: gbe:GbCGDNIH1_0769 phosphoribosylformimino-5-aminoimidazole carboxamide isomerase family protein; histidine biosynthesis protein 1525451..1526158 Hyphomicrobium denitrificans ATCC 51888 9387365 YP_003755607.1 CDS Hden_1474 NC_014313.1 1526339 1526851 R KEGG: xau:Xaut_0032 formaldehyde-activating protein; TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); formaldehyde-activating enzyme complement(1526339..1526851) Hyphomicrobium denitrificans ATCC 51888 9387366 YP_003755608.1 CDS Hden_1475 NC_014313.1 1527082 1527942 R PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: met:M446_5782 triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA protein complement(1527082..1527942) Hyphomicrobium denitrificans ATCC 51888 9387367 YP_003755609.1 CDS Hden_1476 NC_014313.1 1527939 1528922 R KEGG: mno:Mnod_6005 alpha-L-glutamate ligase, RimK family; TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; RimK family alpha-L-glutamate ligase complement(1527939..1528922) Hyphomicrobium denitrificans ATCC 51888 9387368 YP_003755610.1 CDS Hden_1477 NC_014313.1 1528906 1529871 R TIGRFAM: methenyltetrahydromethanopterin cyclohydrolase; KEGG: mea:Mex_1p1763 N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; PFAM: Methenyltetrahydromethanopterin cyclohydrolase; methenyltetrahydromethanopterin cyclohydrolase complement(1528906..1529871) Hyphomicrobium denitrificans ATCC 51888 9387369 YP_003755611.1 CDS Hden_1478 NC_014313.1 1529900 1531024 R PFAM: protein of unknown function DUF201; KEGG: msl:Msil_2386 protein of unknown function DUF201; hypothetical protein complement(1529900..1531024) Hyphomicrobium denitrificans ATCC 51888 9387370 YP_003755612.1 CDS Hden_1479 NC_014313.1 1531029 1531931 R PFAM: methylene-tetrahydromethanopterin dehydrogenase; KEGG: msl:Msil_2385 methylenetetrahydrofolate dehydrogenase (NADP(+)); methylene-tetrahydromethanopterin dehydrogenase complement(1531029..1531931) Hyphomicrobium denitrificans ATCC 51888 9387371 YP_003755613.1 CDS Hden_1480 NC_014313.1 1531960 1532928 R KEGG: msl:Msil_2384 beta-ribofuranosylaminobenzene 5'-phosphate synthase family; TIGRFAM: beta-ribofuranosylaminobenzene 5'-phosphate synthase family; PFAM: GHMP kinase; GHMP kinase domain protein; beta-ribofuranosylaminobenzene 5'-phosphate synthase family complement(1531960..1532928) Hyphomicrobium denitrificans ATCC 51888 9387372 YP_003755614.1 CDS Hden_1481 NC_014313.1 1533045 1533422 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mrd:Mrad2831_2778 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 1533045..1533422 Hyphomicrobium denitrificans ATCC 51888 9387373 YP_003755615.1 CDS Hden_1482 NC_014313.1 1533435 1533962 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; KEGG: mno:Mnod_5981 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1533435..1533962 Hyphomicrobium denitrificans ATCC 51888 9387374 YP_003755616.1 CDS Hden_1483 NC_014313.1 1534075 1534431 R PFAM: cytochrome C class I; KEGG: mno:Mnod_4583 cytochrome c class I; cytochrome C class I complement(1534075..1534431) Hyphomicrobium denitrificans ATCC 51888 9387375 YP_003755617.1 CDS Hden_1484 NC_014313.1 1534584 1535744 R TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: radical SAM protein; KEGG: bbt:BBta_6304 pyrroloquinoline quinone biosynthesis protein PqqE; SMART: Elongator protein 3/MiaB/NifB; coenzyme PQQ biosynthesis protein E complement(1534584..1535744) Hyphomicrobium denitrificans ATCC 51888 9387376 YP_003755618.1 CDS Hden_1485 NC_014313.1 1535774 1536076 R PFAM: coenzyme PQQ synthesis D; KEGG: rpc:RPC_0882 coenzyme PQQ synthesis D; coenzyme PQQ synthesis D complement(1535774..1536076) Hyphomicrobium denitrificans ATCC 51888 9387377 YP_003755619.1 CDS Hden_1486 NC_014313.1 1536089 1536865 R TIGRFAM: coenzyme PQQ biosynthesis protein C; KEGG: msl:Msil_1739 pyrroloquinoline quinone biosynthesis protein PqqC; PFAM: TENA/THI-4 domain protein; coenzyme PQQ biosynthesis protein C complement(1536089..1536865) Hyphomicrobium denitrificans ATCC 51888 9387378 YP_003755620.1 CDS Hden_1487 NC_014313.1 1536862 1537794 R TIGRFAM: coenzyme PQQ biosynthesis protein B; KEGG: azl:AZL_a09970 pyrroloquinoline quinone biosynthesis protein B; coenzyme PQQ biosynthesis protein B complement(1536862..1537794) Hyphomicrobium denitrificans ATCC 51888 9387379 YP_003755621.1 CDS Hden_1488 NC_014313.1 1537937 1538059 R KEGG: mex:Mext_1820 coenzyme PQQ biosynthesis protein A; TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A complement(1537937..1538059) Hyphomicrobium denitrificans ATCC 51888 9387380 YP_003755622.1 CDS Hden_1489 NC_014313.1 1538199 1538516 R KEGG: bpl:BURPS1106A_A0321 hypothetical protein; hypothetical protein complement(1538199..1538516) Hyphomicrobium denitrificans ATCC 51888 9387381 YP_003755623.1 CDS Hden_1490 NC_014313.1 1538660 1540447 D PFAM: flavodoxin/nitric oxide synthase; FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: met:M446_5483 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase 1538660..1540447 Hyphomicrobium denitrificans ATCC 51888 9387382 YP_003755624.1 CDS Hden_1491 NC_014313.1 1540508 1542220 D PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: mno:Mnod_1804 sulfite reductase (NADPH) hemoprotein, beta-component; nitrite and sulfite reductase 4Fe-4S region 1540508..1542220 Hyphomicrobium denitrificans ATCC 51888 9387383 YP_003755625.1 CDS Hden_1492 NC_014313.1 1542259 1542894 R PFAM: ParB-like nuclease; KEGG: bid:Bind_2187 ParB-like nuclease; ParB-like nuclease complement(1542259..1542894) Hyphomicrobium denitrificans ATCC 51888 9387384 YP_003755626.1 CDS Hden_1493 NC_014313.1 1542918 1544237 R KEGG: rpe:RPE_3556 recombination factor protein RarA; PFAM: ATPase AAA; SMART: ATPase AAA; ATPase AAA complement(1542918..1544237) Hyphomicrobium denitrificans ATCC 51888 9387385 YP_003755627.1 CDS Hden_1494 NC_014313.1 1544336 1544986 R PFAM: protein of unknown function DUF583; KEGG: ecb:100061543 chondroitin sulfate proteoglycan 4; hypothetical protein complement(1544336..1544986) Hyphomicrobium denitrificans ATCC 51888 9387386 YP_003755628.1 CDS Hden_1495 NC_014313.1 1545193 1546176 D manually curated; TIGRFAM: pseudouridine synthase, RluA family; KEGG: oan:Oant_2083 RluA family pseudouridine synthase; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; pseudouridine synthase 1545193..1546176 Hyphomicrobium denitrificans ATCC 51888 9387387 YP_003755629.1 CDS Hden_1496 NC_014313.1 1546217 1546747 D KEGG: mes:Meso_0938 hypothetical protein; hypothetical protein 1546217..1546747 Hyphomicrobium denitrificans ATCC 51888 9387388 YP_003755630.1 CDS Hden_1497 NC_014313.1 1546855 1547535 D KEGG: gph1; phosphoglycolate phosphatase-1; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase 1546855..1547535 Hyphomicrobium denitrificans ATCC 51888 9387389 YP_003755631.1 CDS Hden_1498 NC_014313.1 1547532 1548347 D PFAM: ATP12 ATPase; KEGG: rpa:RPA3207 ATP12 ATPase; ATP12 ATPase 1547532..1548347 Hyphomicrobium denitrificans ATCC 51888 9387390 YP_003755632.1 CDS Hden_1499 NC_014313.1 1548344 1549642 R PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: met:M446_5725 hypothetical protein; hypothetical protein complement(1548344..1549642) Hyphomicrobium denitrificans ATCC 51888 9387391 YP_003755633.1 CDS Hden_1500 NC_014313.1 1549861 1550553 D KEGG: scb:SCAB_3601 hypothetical protein; hypothetical protein 1549861..1550553 Hyphomicrobium denitrificans ATCC 51888 9387392 YP_003755634.1 CDS Hden_1501 NC_014313.1 1550695 1552227 D PFAM: carboxyl transferase; KEGG: pla:Plav_2771 carboxyl transferase; carboxyl transferase 1550695..1552227 Hyphomicrobium denitrificans ATCC 51888 9387393 YP_003755635.1 CDS Hden_1502 NC_014313.1 1552345 1552641 R KEGG: sti:Sthe_2959 hypothetical protein; hypothetical protein complement(1552345..1552641) Hyphomicrobium denitrificans ATCC 51888 9387394 YP_003755636.1 CDS Hden_1503 NC_014313.1 1552648 1553763 R PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: psl:Psta_4108 hypothetical protein; glycosyl hydrolase complement(1552648..1553763) Hyphomicrobium denitrificans ATCC 51888 9387395 YP_003755637.1 CDS Hden_1504 NC_014313.1 1554096 1555289 D PFAM: monooxygenase FAD-binding; KEGG: rpe:RPE_3593 monooxygenase, FAD-binding protein; FAD-binding monooxygenase protein 1554096..1555289 Hyphomicrobium denitrificans ATCC 51888 9387396 YP_003755638.1 CDS Hden_1505 NC_014313.1 1555308 1556186 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: rpc:RPC_1857 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase complement(1555308..1556186) Hyphomicrobium denitrificans ATCC 51888 9387397 YP_003755639.1 CDS Hden_1506 NC_014313.1 1556370 1557080 D PFAM: MgtC/SapB transporter; KEGG: nha:Nham_0456 MgtC/SapB transporter; MgtC/SapB transporter 1556370..1557080 Hyphomicrobium denitrificans ATCC 51888 9387398 YP_003755640.1 CDS Hden_1507 NC_014313.1 1557137 1558450 D PFAM: major facilitator superfamily MFS_1; KEGG: avi:Avi_0513 MFS permease; major facilitator superfamily protein 1557137..1558450 Hyphomicrobium denitrificans ATCC 51888 9387399 YP_003755641.1 CDS Hden_1508 NC_014313.1 1558467 1561043 R TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; haloacid dehalogenase; KEGG: rpt:Rpal_1856 ATPase P; SMART: TRASH domain protein; copper-translocating P-type ATPase complement(1558467..1561043) Hyphomicrobium denitrificans ATCC 51888 9387400 YP_003755642.1 CDS Hden_1509 NC_014313.1 1561125 1561400 D PFAM: protein of unknown function DUF156; KEGG: oca:OCAR_7636 hypothetical protein; hypothetical protein 1561125..1561400 Hyphomicrobium denitrificans ATCC 51888 9387401 YP_003755643.1 CDS Hden_1510 NC_014313.1 1561558 1562550 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: ara:Arad_10009 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1561558..1562550 Hyphomicrobium denitrificans ATCC 51888 9387402 YP_003755644.1 CDS Hden_1511 NC_014313.1 1562557 1563396 R KEGG: rpe:RPE_1623 hypothetical protein; hypothetical protein complement(1562557..1563396) Hyphomicrobium denitrificans ATCC 51888 9387403 YP_003755645.1 CDS Hden_1512 NC_014313.1 1563583 1563852 R KEGG: nca:Noca_2595 peptidase C60, sortase A and B; hypothetical protein complement(1563583..1563852) Hyphomicrobium denitrificans ATCC 51888 9387404 YP_003755646.1 CDS Hden_1513 NC_014313.1 1563943 1564650 R PFAM: SCP-like extracellular; KEGG: eba:ebA3441 hypothetical protein; SCP-like extracellular complement(1563943..1564650) Hyphomicrobium denitrificans ATCC 51888 9387405 YP_003755647.1 CDS Hden_1514 NC_014313.1 1564825 1567074 D SMART: DNA gyrase/topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, subunit alpha; KEGG: atc:AGR_C_2144 topoisomerase IV subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase IV subunit alpha 1564825..1567074 Hyphomicrobium denitrificans ATCC 51888 9387406 YP_003755648.1 CDS Hden_1515 NC_014313.1 1567183 1567602 D KEGG: zma:100281488 LOC100281488; hypothetical protein 1567183..1567602 Hyphomicrobium denitrificans ATCC 51888 9387407 YP_003755649.1 CDS Hden_1516 NC_014313.1 1567630 1568394 R PFAM: Arginine-tRNA-protein transferase domain protein; KEGG: bja:blr5039 arginyl-tRNA-protein transferase; arginine-tRNA-protein transferase complement(1567630..1568394) Hyphomicrobium denitrificans ATCC 51888 9387408 YP_003755650.1 CDS Hden_1517 NC_014313.1 1568630 1568860 R KEGG: bfa:Bfae_09020 hypothetical protein; hypothetical protein complement(1568630..1568860) Hyphomicrobium denitrificans ATCC 51888 9387409 YP_003755651.1 CDS Hden_1518 NC_014313.1 1569258 1569464 D KEGG: bbt:BBta_5959 hypothetical protein; hypothetical protein 1569258..1569464 Hyphomicrobium denitrificans ATCC 51888 9387410 YP_003755652.1 CDS Hden_1519 NC_014313.1 1569550 1570839 D TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: mno:Mnod_4793 O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-acetylhomoserine/O-acetylserine sulfhydrylase 1569550..1570839 Hyphomicrobium denitrificans ATCC 51888 9387411 YP_003755653.1 CDS Hden_1520 NC_014313.1 1570861 1571181 D KEGG: lif:LinJ31.1690 hypothetical protein; hypothetical protein 1570861..1571181 Hyphomicrobium denitrificans ATCC 51888 9387412 YP_003755654.1 CDS Hden_1521 NC_014313.1 1571251 1573065 R KEGG: mno:Mnod_6027 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; poly(R)-hydroxyalkanoic acid synthase, class I complement(1571251..1573065) Hyphomicrobium denitrificans ATCC 51888 9387413 YP_003755655.1 CDS Hden_1522 NC_014313.1 1573450 1574676 D PFAM: aminotransferase class I and II; KEGG: xau:Xaut_3522 aminotransferase; class I and II aminotransferase 1573450..1574676 Hyphomicrobium denitrificans ATCC 51888 9387414 YP_003755656.1 CDS Hden_1523 NC_014313.1 1574686 1576011 D PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: oan:Oant_1917 homoserine dehydrogenase; homoserine dehydrogenase 1574686..1576011 Hyphomicrobium denitrificans ATCC 51888 9387415 YP_003755657.1 CDS Hden_1524 NC_014313.1 1576054 1577052 D TIGRFAM: fructose-1,6-bisphosphatase, class II; KEGG: bmr:BMI_I1284 fructose 1,6-bisphosphatase II; PFAM: GlpX family protein; fructose-1,6-bisphosphatase, class II 1576054..1577052 Hyphomicrobium denitrificans ATCC 51888 9387416 YP_003755658.1 CDS Hden_1525 NC_014313.1 1577164 1579014 D KEGG: ara:Arad_2163 single-stranded-DNA-specific exonuclease protein; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; single-stranded-DNA-specific exonuclease RecJ 1577164..1579014 Hyphomicrobium denitrificans ATCC 51888 9387417 YP_003755659.1 CDS Hden_1526 NC_014313.1 1579187 1580422 R PFAM: integrase family protein; KEGG: mch:Mchl_4758 integrase family protein; integrase family protein complement(1579187..1580422) Hyphomicrobium denitrificans ATCC 51888 9387419 YP_003755660.1 CDS Hden_1527 NC_014313.1 1580419 1580688 R KEGG: dsh:Dshi_0989 hypothetical protein; hypothetical protein complement(1580419..1580688) Hyphomicrobium denitrificans ATCC 51888 9387420 YP_003755661.1 CDS Hden_1528 NC_014313.1 1580695 1580886 R KEGG: vex:VEA_001988 fatty oxidation complex alpha subunit FadB; hypothetical protein complement(1580695..1580886) Hyphomicrobium denitrificans ATCC 51888 9387421 YP_003755662.1 CDS Hden_1529 NC_014313.1 1580936 1581445 R KEGG: bgl:bglu_1g21240 P42.1; manually curated; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; Pathogenesis-related transcriptional factor and ERF protein complement(1580936..1581445) Hyphomicrobium denitrificans ATCC 51888 9387422 YP_003755663.1 CDS Hden_1530 NC_014313.1 1581450 1581797 R KEGG: aco:Amico_0795 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; hypothetical protein complement(1581450..1581797) Hyphomicrobium denitrificans ATCC 51888 9387423 YP_003755664.1 CDS Hden_1531 NC_014313.1 1581810 1582064 R KEGG: cyb:CYB_1946 hypothetical protein; hypothetical protein complement(1581810..1582064) Hyphomicrobium denitrificans ATCC 51888 9387424 YP_003755665.1 CDS Hden_1532 NC_014313.1 1582068 1582319 R hypothetical protein complement(1582068..1582319) Hyphomicrobium denitrificans ATCC 51888 9387425 YP_003755666.1 CDS Hden_1533 NC_014313.1 1582316 1582552 R KEGG: bfo:BRAFLDRAFT_67299 hypothetical protein; hypothetical protein complement(1582316..1582552) Hyphomicrobium denitrificans ATCC 51888 9387426 YP_003755667.1 CDS Hden_1534 NC_014313.1 1582542 1583006 R KEGG: det:DET0983 translation initiation factor IF-2; hypothetical protein complement(1582542..1583006) Hyphomicrobium denitrificans ATCC 51888 9387427 YP_003755668.1 CDS Hden_1535 NC_014313.1 1583267 1583527 R KEGG: mdo:100019691 similar to FRAP-related protein; hypothetical protein complement(1583267..1583527) Hyphomicrobium denitrificans ATCC 51888 9387428 YP_003755669.1 CDS Hden_1536 NC_014313.1 1583524 1583670 R hypothetical protein complement(1583524..1583670) Hyphomicrobium denitrificans ATCC 51888 9387429 YP_003755670.1 CDS Hden_1537 NC_014313.1 1583670 1584020 R KEGG: dmo:Dmoj_GI23121 GI23121 gene product from transcript GI23121-RA; hypothetical protein complement(1583670..1584020) Hyphomicrobium denitrificans ATCC 51888 9387430 YP_003755671.1 CDS Hden_1538 NC_014313.1 1584021 1584338 R KEGG: olu:OSTLU_24147 predicted protein; hypothetical protein complement(1584021..1584338) Hyphomicrobium denitrificans ATCC 51888 9387431 YP_003755672.1 CDS Hden_1539 NC_014313.1 1584335 1584580 R hypothetical protein complement(1584335..1584580) Hyphomicrobium denitrificans ATCC 51888 9387432 YP_003755673.1 CDS Hden_1540 NC_014313.1 1584574 1585008 R KEGG: cre:CHLREDRAFT_167801 hypothetical protein; hypothetical protein complement(1584574..1585008) Hyphomicrobium denitrificans ATCC 51888 9387433 YP_003755674.1 CDS Hden_1541 NC_014313.1 1585405 1586160 R KEGG: mth:MTH1028 hypothetical protein; hypothetical protein complement(1585405..1586160) Hyphomicrobium denitrificans ATCC 51888 9387434 YP_003755675.1 CDS Hden_1542 NC_014313.1 1586157 1586531 R PFAM: HNH endonuclease; KEGG: sye:Syncc9902_1436 HNH nuclease; HNH endonuclease complement(1586157..1586531) Hyphomicrobium denitrificans ATCC 51888 9387435 YP_003755676.1 CDS Hden_1543 NC_014313.1 1586528 1586686 R KEGG: tva:TVAG_348550 Sec23/Sec24 zinc finger family protein; hypothetical protein complement(1586528..1586686) Hyphomicrobium denitrificans ATCC 51888 9387436 YP_003755677.1 CDS Hden_1544 NC_014313.1 1586683 1587327 R KEGG: lhk:LHK_01497 exonuclease; TIGRFAM: phage-type endonuclease; PFAM: YqaJ viral recombinase family; phage-type endonuclease complement(1586683..1587327) Hyphomicrobium denitrificans ATCC 51888 9387437 YP_003755678.1 CDS Hden_1545 NC_014313.1 1587324 1588040 R PFAM: ERF family protein; KEGG: rpi:Rpic_2344 ERF family protein; ERF family protein complement(1587324..1588040) Hyphomicrobium denitrificans ATCC 51888 9387438 YP_003755679.1 CDS Hden_1546 NC_014313.1 1588037 1588207 R hypothetical protein complement(1588037..1588207) Hyphomicrobium denitrificans ATCC 51888 9387439 YP_003755680.1 CDS Hden_1547 NC_014313.1 1588194 1588604 R KEGG: sma:SAV_2858 M protein; hypothetical protein complement(1588194..1588604) Hyphomicrobium denitrificans ATCC 51888 9387440 YP_003755681.1 CDS Hden_1548 NC_014313.1 1588814 1588930 R hypothetical protein complement(1588814..1588930) Hyphomicrobium denitrificans ATCC 51888 9387441 YP_003755682.1 CDS Hden_1549 NC_014313.1 1588930 1589136 R hypothetical protein complement(1588930..1589136) Hyphomicrobium denitrificans ATCC 51888 9387442 YP_003755683.1 CDS Hden_1550 NC_014313.1 1589136 1589504 R KEGG: lga:LGAS_1167 trigger factor; hypothetical protein complement(1589136..1589504) Hyphomicrobium denitrificans ATCC 51888 9387443 YP_003755684.1 CDS Hden_1551 NC_014313.1 1589870 1590493 D KEGG: bpt:Bpet2666 chloride channel protein-related protein; hypothetical protein 1589870..1590493 Hyphomicrobium denitrificans ATCC 51888 9387444 YP_003755685.1 CDS Hden_1552 NC_014313.1 1590574 1590924 R KEGG: ere:EUBREC_0387 hypothetical protein; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein complement(1590574..1590924) Hyphomicrobium denitrificans ATCC 51888 9387445 YP_003755686.1 CDS Hden_1553 NC_014313.1 1591149 1591427 R KEGG: mdo:100018023 similar to ATPase, class I, type 8B, member 3; hypothetical protein complement(1591149..1591427) Hyphomicrobium denitrificans ATCC 51888 9387446 YP_003755687.1 CDS Hden_1554 NC_014313.1 1591780 1592127 D KEGG: pmu:PM0674 hypothetical protein; hypothetical protein 1591780..1592127 Hyphomicrobium denitrificans ATCC 51888 9387447 YP_003755688.1 CDS Hden_1555 NC_014313.1 1592196 1593158 D KEGG: saa:SAUSA300_1957 phiPVL ORF046-like protein; hypothetical protein 1592196..1593158 Hyphomicrobium denitrificans ATCC 51888 9387448 YP_003755689.1 CDS Hden_1556 NC_014313.1 1593228 1593593 D KEGG: sro:Sros_7095 hypothetical protein; hypothetical protein 1593228..1593593 Hyphomicrobium denitrificans ATCC 51888 9387449 YP_003755690.1 CDS Hden_1557 NC_014313.1 1593590 1593817 D KEGG: mlo:mlr7272 hypothetical protein; hypothetical protein 1593590..1593817 Hyphomicrobium denitrificans ATCC 51888 9387450 YP_003755691.1 CDS Hden_1558 NC_014313.1 1594155 1594361 D KEGG: dfe:Dfer_3702 protein of unknown function DUF1549; hypothetical protein 1594155..1594361 Hyphomicrobium denitrificans ATCC 51888 9387451 YP_003755692.1 CDS Hden_1559 NC_014313.1 1594462 1594602 D hypothetical protein 1594462..1594602 Hyphomicrobium denitrificans ATCC 51888 9387452 YP_003755693.1 CDS Hden_1560 NC_014313.1 1594599 1594949 D KEGG: tmz:Tmz1t_0342 ATPase AAA; hypothetical protein 1594599..1594949 Hyphomicrobium denitrificans ATCC 51888 9387453 YP_003755694.1 CDS Hden_1561 NC_014313.1 1594946 1595500 D KEGG: dol:Dole_0697 NusG antitermination factor; hypothetical protein 1594946..1595500 Hyphomicrobium denitrificans ATCC 51888 9387454 YP_003755695.1 CDS Hden_1562 NC_014313.1 1595497 1595649 D hypothetical protein 1595497..1595649 Hyphomicrobium denitrificans ATCC 51888 9387455 YP_003755696.1 CDS Hden_1563 NC_014313.1 1595639 1595944 D KEGG: bph:Bphy_1887 lambda family phage portal protein; hypothetical protein 1595639..1595944 Hyphomicrobium denitrificans ATCC 51888 9387456 YP_003755697.1 CDS Hden_1564 NC_014313.1 1595972 1597009 R KEGG: pat:Patl_2643 KDPG and KHG aldolase; hypothetical protein complement(1595972..1597009) Hyphomicrobium denitrificans ATCC 51888 9387457 YP_003755698.1 CDS Hden_1565 NC_014313.1 1597006 1597125 R hypothetical protein complement(1597006..1597125) Hyphomicrobium denitrificans ATCC 51888 9387458 YP_003755699.1 CDS Hden_1566 NC_014313.1 1597328 1597537 D KEGG: rru:Rru_A0712 XRE family transcriptional regulator; hypothetical protein 1597328..1597537 Hyphomicrobium denitrificans ATCC 51888 9387459 YP_003755700.1 CDS Hden_1568 NC_014313.1 1598564 1599364 D KEGG: ade:Adeh_3620 hypothetical protein; hypothetical protein 1598564..1599364 Hyphomicrobium denitrificans ATCC 51888 9387461 YP_003755701.1 CDS Hden_1569 NC_014313.1 1599400 1600725 D KEGG: slt:Slit_1566 plectin; hypothetical protein 1599400..1600725 Hyphomicrobium denitrificans ATCC 51888 9387462 YP_003755702.1 CDS Hden_1570 NC_014313.1 1600725 1602455 D KEGG: mma:MM_2295 surface layer protein B; hypothetical protein 1600725..1602455 Hyphomicrobium denitrificans ATCC 51888 9387463 YP_003755703.1 CDS Hden_1571 NC_014313.1 1602459 1602650 D hypothetical protein 1602459..1602650 Hyphomicrobium denitrificans ATCC 51888 9387464 YP_003755704.1 CDS Hden_1572 NC_014313.1 1602651 1602989 D KEGG: ppa:PAS_chr2-2_0118 hypothetical protein; hypothetical protein 1602651..1602989 Hyphomicrobium denitrificans ATCC 51888 9387465 YP_003755705.1 CDS Hden_1573 NC_014313.1 1602989 1603393 D manually curated; KEGG: hap:HAPS_1583 phage small subunit terminase; phage small subunit terminase 1602989..1603393 Hyphomicrobium denitrificans ATCC 51888 9387466 YP_003755706.1 CDS Hden_1577 NC_014313.1 1606905 1607075 D KEGG: ppu:PP_3045 ClpP protease; hypothetical protein 1606905..1607075 Hyphomicrobium denitrificans ATCC 51888 9387469 YP_003755707.1 CDS Hden_1578 NC_014313.1 1607211 1608083 D KEGG: mrd:Mrad2831_5694 hypothetical protein; hypothetical protein 1607211..1608083 Hyphomicrobium denitrificans ATCC 51888 9387470 YP_003755708.1 CDS Hden_1579 NC_014313.1 1608140 1609252 D KEGG: rlt:Rleg2_1147 hypothetical protein; hypothetical protein 1608140..1609252 Hyphomicrobium denitrificans ATCC 51888 9387471 YP_003755709.1 CDS Hden_1580 NC_014313.1 1609267 1609722 D KEGG: yen:YE0694 adhesin; hypothetical protein 1609267..1609722 Hyphomicrobium denitrificans ATCC 51888 9387472 YP_003755710.1 CDS Hden_1581 NC_014313.1 1609773 1609988 D KEGG: osa:4336532 hypothetical protein; hypothetical protein 1609773..1609988 Hyphomicrobium denitrificans ATCC 51888 9387473 YP_003755711.1 CDS Hden_1582 NC_014313.1 1609969 1610340 D KEGG: mrb:Mrub_0518 type IV secretory pathway VirB4 protein; hypothetical protein 1609969..1610340 Hyphomicrobium denitrificans ATCC 51888 9387474 YP_003755712.1 CDS Hden_1583 NC_014313.1 1610340 1611761 D KEGG: rpi:Rpic_2295 hypothetical protein; hypothetical protein 1610340..1611761 Hyphomicrobium denitrificans ATCC 51888 9387475 YP_003755713.1 CDS Hden_1584 NC_014313.1 1611758 1612210 D KEGG: ypb:YPTS_3441 outer membrane autotransporter; outer membrane autotransporter 1611758..1612210 Hyphomicrobium denitrificans ATCC 51888 9387476 YP_003755714.1 CDS Hden_1585 NC_014313.1 1612207 1612899 D KEGG: pan:PODANSg4525 hypothetical protein; hypothetical protein 1612207..1612899 Hyphomicrobium denitrificans ATCC 51888 9387477 YP_003755715.1 CDS Hden_1586 NC_014313.1 1612931 1613536 D KEGG: rcu:RCOM_1968810 DNA transfer protein gp7; hypothetical protein 1612931..1613536 Hyphomicrobium denitrificans ATCC 51888 9387478 YP_003755716.1 CDS Hden_1587 NC_014313.1 1613536 1614024 D PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bgl:bglu_1g21240 P42.1; Pathogenesis-related transcriptional factor and ERF protein 1613536..1614024 Hyphomicrobium denitrificans ATCC 51888 9387479 YP_003755717.1 CDS Hden_1588 NC_014313.1 1614024 1615205 D KEGG: azc:AZC_0850 hypothetical protein; hypothetical protein 1614024..1615205 Hyphomicrobium denitrificans ATCC 51888 9387480 YP_003755718.1 CDS Hden_1589 NC_014313.1 1615205 1617304 D KEGG: mes:Meso_0239 hypothetical protein; hypothetical protein 1615205..1617304 Hyphomicrobium denitrificans ATCC 51888 9387481 YP_003755719.1 CDS Hden_1591 NC_014313.1 1617527 1618816 D KEGG: mea:Mex_1p1304 hypothetical protein; hypothetical protein 1617527..1618816 Hyphomicrobium denitrificans ATCC 51888 9387483 YP_003755720.1 CDS Hden_1592 NC_014313.1 1618874 1619317 D KEGG: ang:An10g00420 hypothetical protein; hypothetical protein 1618874..1619317 Hyphomicrobium denitrificans ATCC 51888 9387484 YP_003755721.1 CDS Hden_1593 NC_014313.1 1619304 1619651 D KEGG: syw:SYNW2350 hypothetical protein; hypothetical protein 1619304..1619651 Hyphomicrobium denitrificans ATCC 51888 9387485 YP_003755722.1 CDS Hden_1594 NC_014313.1 1619648 1620445 D KEGG: abc:ACICU_02150 hypothetical protein; hypothetical protein 1619648..1620445 Hyphomicrobium denitrificans ATCC 51888 9387486 YP_003755723.1 CDS Hden_1595 NC_014313.1 1620445 1620693 D KEGG: gym:GYMC10_3997 hypothetical protein; hypothetical protein 1620445..1620693 Hyphomicrobium denitrificans ATCC 51888 9387487 YP_003755724.1 CDS Hden_1596 NC_014313.1 1620848 1621333 R KEGG: nha:Nham_2362 hypothetical protein; PFAM: Pathogenesis-related transcriptional factor and ERF protein; HNH endonuclease; SMART: HNH nuclease; Pathogenesis-related transcriptional factor and ERF protein complement(1620848..1621333) Hyphomicrobium denitrificans ATCC 51888 9387488 YP_003755725.1 CDS Hden_1597 NC_014313.1 1621369 1622145 D KEGG: nfa:nfa8110 hypothetical protein; hypothetical protein 1621369..1622145 Hyphomicrobium denitrificans ATCC 51888 9387489 YP_003755726.1 CDS Hden_1598 NC_014313.1 1622185 1622445 D KEGG: bmj:BMULJ_02960 type IV pilus assembly protein; hypothetical protein 1622185..1622445 Hyphomicrobium denitrificans ATCC 51888 9387490 YP_003755727.1 CDS Hden_1599 NC_014313.1 1622757 1623152 R KEGG: bwe:BcerKBAB4_4213 ankyrin repeat-containing protein; ankyrin repeat-containing protein complement(1622757..1623152) Hyphomicrobium denitrificans ATCC 51888 9387491 YP_003755728.1 CDS Hden_1600 NC_014313.1 1623201 1623410 R hypothetical protein complement(1623201..1623410) Hyphomicrobium denitrificans ATCC 51888 9387492 YP_003755729.1 CDS Hden_1601 NC_014313.1 1623507 1623803 D KEGG: Ser/Thr phosphatase family protein; hypothetical protein 1623507..1623803 Hyphomicrobium denitrificans ATCC 51888 9387493 YP_003755730.1 CDS Hden_1602 NC_014313.1 1623893 1624480 R KEGG: tcu:Tcur_3375 protein of unknown function DUF308 membrane; hypothetical protein complement(1623893..1624480) Hyphomicrobium denitrificans ATCC 51888 9387494 YP_003755731.1 CDS Hden_1603 NC_014313.1 1624688 1625383 R KEGG: pkn:PKH_094500 MAEBL; hypothetical protein complement(1624688..1625383) Hyphomicrobium denitrificans ATCC 51888 9387495 YP_003755732.1 CDS Hden_1604 NC_014313.1 1625553 1625843 R KEGG: rce:RC1_1176 transglycosylase associated protein; transglycosylase associated protein complement(1625553..1625843) Hyphomicrobium denitrificans ATCC 51888 9387496 YP_003755733.1 CDS Hden_1605 NC_014313.1 1626001 1627737 R PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; cytochrome C biogenesis protein transmembrane region; KEGG: bxe:Bxe_B0816 transmembrane protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(1626001..1627737) Hyphomicrobium denitrificans ATCC 51888 9387497 YP_003755734.1 CDS Hden_1606 NC_014313.1 1627966 1628748 D PFAM: protein of unknown function DUF1194; KEGG: mch:Mchl_1533 protein of unknown function DUF1194; hypothetical protein 1627966..1628748 Hyphomicrobium denitrificans ATCC 51888 9387498 YP_003755735.1 CDS Hden_1607 NC_014313.1 1628751 1629008 R KEGG: xau:Xaut_0033 hypothetical protein; hypothetical protein complement(1628751..1629008) Hyphomicrobium denitrificans ATCC 51888 9387499 YP_003755736.1 CDS Hden_1608 NC_014313.1 1629123 1629932 R KEGG: mea:Mex_1p1755 formyltransferase/hydrolase complex Fhc subunit C; TIGRFAM: formylmethanofuran dehydrogenase subunit C; PFAM: glutamate synthase subunit alpha domain protein; formylmethanofuran dehydrogenase subunit C complement(1629123..1629932) Hyphomicrobium denitrificans ATCC 51888 9387500 YP_003755737.1 CDS Hden_1609 NC_014313.1 1629932 1630834 R TIGRFAM: formylmethanofuran/tetrahydromethanopterin N-formyltransferase; KEGG: mch:Mchl_2160 formylmethanofuran--tetrahydromethanopterin formyltransferase; PFAM: formylmethanofuran: tetrahydromethanopterin formyltransferase (Ftr); formylmethanofuran/tetrahydromethanopterin N-formyltransferase complement(1629932..1630834) Hyphomicrobium denitrificans ATCC 51888 9387501 YP_003755738.1 CDS Hden_1610 NC_014313.1 1630831 1632495 R KEGG: mca:MCA2859 formylmethanofurane dehydrogenase, A subunit, TIGRFAM: formylmethanofuran dehydrogenase subunit A; PFAM: amidohydrolase; formylmethanofuran dehydrogenase subunit A complement(1630831..1632495) Hyphomicrobium denitrificans ATCC 51888 9387502 YP_003755739.1 CDS Hden_1611 NC_014313.1 1632516 1633802 R KEGG: nhl:Nhal_0015 formylmethanofuran dehydrogenase subunit B; formylmethanofuran dehydrogenase subunit B complement(1632516..1633802) Hyphomicrobium denitrificans ATCC 51888 9387503 YP_003755740.1 CDS Hden_1612 NC_014313.1 1634025 1634579 D PFAM: polyketide cyclase/dehydrase; KEGG: mpo:Mpop_1790 conserved hypothetical protein; signal peptide; polyketide cyclase/dehydrase 1634025..1634579 Hyphomicrobium denitrificans ATCC 51888 9387504 YP_003755741.1 CDS Hden_1613 NC_014313.1 1634579 1635529 D KEGG: bja:bll4706 hypothetical protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; 40-residue YVTN family beta-propeller repeat protein 1634579..1635529 Hyphomicrobium denitrificans ATCC 51888 9387505 YP_003755742.1 CDS Hden_1614 NC_014313.1 1635707 1636390 D KEGG: mpo:Mpop_1768 hypothetical protein; hypothetical protein 1635707..1636390 Hyphomicrobium denitrificans ATCC 51888 9387506 YP_003755743.1 CDS Hden_1615 NC_014313.1 1636387 1636749 D KEGG: rde:RD1_0883 hypothetical protein; hypothetical protein 1636387..1636749 Hyphomicrobium denitrificans ATCC 51888 9387507 YP_003755744.1 CDS Hden_1616 NC_014313.1 1636927 1637895 R SMART: beta-lactamase; KEGG: xau:Xaut_1782 beta-lactamase domain-containing protein; beta-lactamase complement(1636927..1637895) Hyphomicrobium denitrificans ATCC 51888 9387508 YP_003755745.1 CDS Hden_1617 NC_014313.1 1638341 1640167 D TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: xau:Xaut_1781 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase 1638341..1640167 Hyphomicrobium denitrificans ATCC 51888 9387509 YP_003755746.1 CDS Hden_1618 NC_014313.1 1640458 1641042 D KEGG: mrd:Mrad2831_0509 hypothetical protein; hypothetical protein 1640458..1641042 Hyphomicrobium denitrificans ATCC 51888 9387510 YP_003755747.1 CDS Hden_1619 NC_014313.1 1641218 1642180 D KEGG: rpe:RPE_0853 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 1641218..1642180 Hyphomicrobium denitrificans ATCC 51888 9387511 YP_003755748.1 CDS Hden_1620 NC_014313.1 1642300 1642938 D KEGG: bra:BRADO5467 hypothetical protein; hypothetical protein 1642300..1642938 Hyphomicrobium denitrificans ATCC 51888 9387512 YP_003755749.1 CDS Hden_1621 NC_014313.1 1643195 1645033 D PFAM: sodium/hydrogen exchanger; TrkA-N domain protein; KEGG: scl:sce5468 glutathione-regulated potassium-efflux system protein KefC; sodium/hydrogen exchanger 1643195..1645033 Hyphomicrobium denitrificans ATCC 51888 9387513 YP_003755750.1 CDS Hden_1622 NC_014313.1 1645187 1647196 D TIGRFAM: transketolase; PFAM: transketolase central region; transketolase; KEGG: rpc:RPC_2897 transketolase; SMART: transketolase; transketolase 1645187..1647196 Hyphomicrobium denitrificans ATCC 51888 9387514 YP_003755751.1 CDS Hden_1623 NC_014313.1 1647244 1648440 D KEGG: mea:Mex_1p2369 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; phosphoglycerate kinase 1647244..1648440 Hyphomicrobium denitrificans ATCC 51888 9387515 YP_003755752.1 CDS Hden_1624 NC_014313.1 1648481 1649278 D PFAM: cytochrome C biogenesis protein transmembrane region; KEGG: rpb:RPB_4376 cytochrome C biogenesis protein, transmembrane region; cytochrome C biogenesis protein transmembrane region 1648481..1649278 Hyphomicrobium denitrificans ATCC 51888 9387516 YP_003755753.1 CDS Hden_1625 NC_014313.1 1649299 1650126 D KEGG: mno:Mnod_4968 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1649299..1650126 Hyphomicrobium denitrificans ATCC 51888 9387517 YP_003755754.1 CDS Hden_1626 NC_014313.1 1650520 1651752 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: met:M446_5803 membrane protein involved in aromatic hydrocarbon degradation; membrane protein involved in aromatic hydrocarbon degradation 1650520..1651752 Hyphomicrobium denitrificans ATCC 51888 9387518 YP_003755755.1 CDS Hden_1627 NC_014313.1 1651831 1652379 R KEGG: mno:Mnod_4959 hypothetical protein; hypothetical protein complement(1651831..1652379) Hyphomicrobium denitrificans ATCC 51888 9387519 YP_003755756.1 CDS Hden_1628 NC_014313.1 1652550 1653758 D PFAM: major facilitator superfamily MFS_1; KEGG: pla:Plav_2503 major facilitator transporter; major facilitator superfamily protein 1652550..1653758 Hyphomicrobium denitrificans ATCC 51888 9387520 YP_003755757.1 CDS Hden_1629 NC_014313.1 1653762 1654739 R PFAM: mandelate racemase/muconate lactonizing protein; KEGG: mno:Mnod_4475 mandelate racemase/muconate lactonizing protein; mandelate racemase/muconate lactonizing protein complement(1653762..1654739) Hyphomicrobium denitrificans ATCC 51888 9387521 YP_003755758.1 CDS Hden_1630 NC_014313.1 1654801 1657557 R PFAM: Apolipoprotein A1/A4/E; KEGG: rhi:NGR_c16680 kinesin-like protein; Apolipoprotein A1/A4/E complement(1654801..1657557) Hyphomicrobium denitrificans ATCC 51888 9387522 YP_003755759.1 CDS Hden_1631 NC_014313.1 1657937 1658341 D KEGG: pla:Plav_2517 Hpt protein; PFAM: Hpt domain protein; SMART: Hpt domain protein; Hpt protein 1657937..1658341 Hyphomicrobium denitrificans ATCC 51888 9387523 YP_003755760.1 CDS Hden_1632 NC_014313.1 1658520 1658840 D PFAM: ferredoxin; KEGG: bja:bll5885 ferrodoxin; ferredoxin 1658520..1658840 Hyphomicrobium denitrificans ATCC 51888 9387524 YP_003755761.1 CDS Hden_1633 NC_014313.1 1658866 1659927 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bra:BRADO5079 thioredoxin reductase, FAD/NAD(P)-binding; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1658866..1659927 Hyphomicrobium denitrificans ATCC 51888 9387525 YP_003755762.1 CDS Hden_1634 NC_014313.1 1659952 1661202 R KEGG: pla:Plav_2433 protein involved in cellulose biosynthesis (CelD)-like protein; protein involved in cellulose biosynthesis (CelD)-like protein complement(1659952..1661202) Hyphomicrobium denitrificans ATCC 51888 9387526 YP_003755763.1 CDS Hden_1635 NC_014313.1 1661317 1661682 R KEGG: gwc:GWCH70_1179 inner-membrane translocator; inner-membrane translocator complement(1661317..1661682) Hyphomicrobium denitrificans ATCC 51888 9387527 YP_003755764.1 CDS Hden_1636 NC_014313.1 1661745 1662260 R KEGG: bfu:BC1G_12951 hypothetical protein; hypothetical protein complement(1661745..1662260) Hyphomicrobium denitrificans ATCC 51888 9387528 YP_003755765.1 CDS Hden_1637 NC_014313.1 1662399 1663610 R KEGG: rpd:RPD_3459 hypothetical protein; hypothetical protein complement(1662399..1663610) Hyphomicrobium denitrificans ATCC 51888 9387529 YP_003755766.1 CDS Hden_1638 NC_014313.1 1663778 1665112 R KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein complement(1663778..1665112) Hyphomicrobium denitrificans ATCC 51888 9387530 YP_003755767.1 CDS Hden_1639 NC_014313.1 1665517 1666827 R KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein complement(1665517..1666827) Hyphomicrobium denitrificans ATCC 51888 9387531 YP_003755768.1 CDS Hden_1640 NC_014313.1 1667612 1669123 D PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: rpe:RPE_0902 glucan biosynthesis protein G; periplasmic glucan biosynthesis protein MdoG 1667612..1669123 Hyphomicrobium denitrificans ATCC 51888 9387532 YP_003755769.1 CDS Hden_1641 NC_014313.1 1669108 1671081 D KEGG: mpo:Mpop_3962 glucosyltransferase MdoH; glucosyltransferase MdoH 1669108..1671081 Hyphomicrobium denitrificans ATCC 51888 9387533 YP_003755770.1 CDS Hden_1642 NC_014313.1 1671091 1672131 R PFAM: conserved hypothetical protein; KEGG: bja:blr7254 hypothetical protein; hypothetical protein complement(1671091..1672131) Hyphomicrobium denitrificans ATCC 51888 9387534 YP_003755771.1 CDS Hden_1643 NC_014313.1 1672128 1673576 R PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: rlg:Rleg_2178 protein of unknown function DUF463 YcjX family protein; hypothetical protein complement(1672128..1673576) Hyphomicrobium denitrificans ATCC 51888 9387535 YP_003755772.1 CDS Hden_1644 NC_014313.1 1673907 1674404 R KEGG: spu:593722 hypothetical LOC593722; hypothetical protein complement(1673907..1674404) Hyphomicrobium denitrificans ATCC 51888 9387536 YP_003755773.1 CDS Hden_1645 NC_014313.1 1674486 1675925 D KEGG: xau:Xaut_0519 malonyl-CoA decarboxylase; PFAM: Malonyl-CoA decarboxylase; Malonyl-CoA decarboxylase 1674486..1675925 Hyphomicrobium denitrificans ATCC 51888 9387537 YP_003755774.1 CDS Hden_1646 NC_014313.1 1676072 1677034 D PFAM: protein of unknown function zinc metallopeptidase KEGG: xau:Xaut_1265 protein of unknown function zinc metallopeptidase; hypothetical protein 1676072..1677034 Hyphomicrobium denitrificans ATCC 51888 9387538 YP_003755775.1 CDS Hden_1647 NC_014313.1 1677134 1678012 R PFAM: sporulation domain protein; KEGG: nha:Nham_1783 hypothetical protein; sporulation domain-containing protein complement(1677134..1678012) Hyphomicrobium denitrificans ATCC 51888 9387539 YP_003755776.1 CDS Hden_1648 NC_014313.1 1678389 1679741 D TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; KEGG: azc:AZC_1718 glucosamine-1-phosphate N-acetyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; UDP-N-acetylglucosamine pyrophosphorylase 1678389..1679741 Hyphomicrobium denitrificans ATCC 51888 9387540 YP_003755777.1 CDS Hden_1649 NC_014313.1 1679886 1681706 D KEGG: bmr:BMI_II576 D-fructose-6-phosphate amidotransferase; TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); glucosamine/fructose-6-phosphate aminotransferase 1679886..1681706 Hyphomicrobium denitrificans ATCC 51888 9387541 YP_003755778.1 CDS Hden_1650 NC_014313.1 1681780 1683102 D PFAM: sporulation domain protein; KEGG: spw:SPCG_1750 cell wall surface anchor family protein; sporulation domain-containing protein 1681780..1683102 Hyphomicrobium denitrificans ATCC 51888 9387542 YP_003755779.1 CDS Hden_1651 NC_014313.1 1683147 1683968 D PFAM: protein of unknown function DUF502; KEGG: mlo:mll0832 hypothetical protein; hypothetical protein 1683147..1683968 Hyphomicrobium denitrificans ATCC 51888 9387543 YP_003755780.1 CDS Hden_1652 NC_014313.1 1683965 1686079 R KEGG: mlo:mlr0830 ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase; nucleic acid binding OB-fold tRNA/helicase-type; helicase; SMART: DEAD-like helicase ; helicase; DEAD/DEAH box helicase complement(1683965..1686079) Hyphomicrobium denitrificans ATCC 51888 9387544 YP_003755781.1 CDS Hden_1653 NC_014313.1 1686312 1686584 D PFAM: protein of unknown function DUF339; KEGG: mch:Mchl_4531 protein of unknown function DUF339; hypothetical protein 1686312..1686584 Hyphomicrobium denitrificans ATCC 51888 9387545 YP_003755782.1 CDS Hden_1654 NC_014313.1 1686594 1690079 D TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase; helicase domain protein; TRCF domain protein; KEGG: azc:AZC_1221 transcription-repair coupling factor; SMART: DEAD-like helicase ; helicase; transcription-repair coupling factor 1686594..1690079 Hyphomicrobium denitrificans ATCC 51888 9387546 YP_003755783.1 CDS Hden_1655 NC_014313.1 1690076 1691614 R PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_3087 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1690076..1691614) Hyphomicrobium denitrificans ATCC 51888 9387547 YP_003755784.1 CDS Hden_1656 NC_014313.1 1691614 1693410 R PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_3093 extracellular solute-binding protein; family 5 extracellular solute-binding protein complement(1691614..1693410) Hyphomicrobium denitrificans ATCC 51888 9387548 YP_003755785.1 CDS Hden_1657 NC_014313.1 1693739 1694632 D PFAM: invasion associated locus B family protein; KEGG: bja:bll4589 hypothetical protein; invasion associated locus B family protein 1693739..1694632 Hyphomicrobium denitrificans ATCC 51888 9387549 YP_003755786.1 CDS Hden_1658 NC_014313.1 1694756 1695088 R KEGG: mrd:Mrad2831_1655 hemimethylated DNA binding protein; TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; hemimethylated DNA binding protein complement(1694756..1695088) Hyphomicrobium denitrificans ATCC 51888 9387550 YP_003755787.1 CDS Hden_1659 NC_014313.1 1695144 1696202 R PFAM: HpcH/HpaI aldolase; KEGG: xau:Xaut_3870 HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(1695144..1696202) Hyphomicrobium denitrificans ATCC 51888 9387551 YP_003755788.1 CDS Hden_1660 NC_014313.1 1696423 1698048 D PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pzu:PHZ_p0173 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1696423..1698048 Hyphomicrobium denitrificans ATCC 51888 9387552 YP_003755789.1 CDS Hden_1661 NC_014313.1 1698168 1699145 D KEGG: sep:SE2249 streptococcal hemagglutinin protein; hypothetical protein 1698168..1699145 Hyphomicrobium denitrificans ATCC 51888 9387553 YP_003755790.1 CDS Hden_1662 NC_014313.1 1699150 1699497 R PFAM: protein of unknown function DUF486; KEGG: mes:Meso_1652 hypothetical protein; hypothetical protein complement(1699150..1699497) Hyphomicrobium denitrificans ATCC 51888 9387554 YP_003755791.1 CDS Hden_1663 NC_014313.1 1699699 1699941 D KEGG: kra:Krad_1453 protein of unknown function DUF477; hypothetical protein 1699699..1699941 Hyphomicrobium denitrificans ATCC 51888 9387555 YP_003755792.1 CDS Hden_1664 NC_014313.1 1700108 1700398 R KEGG: sce:YER093C Subunit of TORC2 (Tor2p-Lst8p-Avo1-Avo2-Tsc11p-Bit61p), a membrane-associated complex that regulates actin cytoskeletal dynamics during polarized growth and cell wall integrity; involved in sphingolipid metabolism; contains a RasGEFN domain; hypothetical protein complement(1700108..1700398) Hyphomicrobium denitrificans ATCC 51888 9387556 YP_003755793.1 CDS Hden_1665 NC_014313.1 1700586 1700891 D KEGG: mrd:Mrad2831_1341 hypothetical protein; hypothetical protein 1700586..1700891 Hyphomicrobium denitrificans ATCC 51888 9387557 YP_003755794.1 CDS Hden_1666 NC_014313.1 1701032 1701268 D PFAM: protein of unknown function DUF883 ElaB; KEGG: protein of unknown function DUF883 ElaB; hypothetical protein 1701032..1701268 Hyphomicrobium denitrificans ATCC 51888 9387558 YP_003755795.1 CDS Hden_1667 NC_014313.1 1701290 1702114 R KEGG: tkm:TK90_0656 GTP-binding protein HSR1-related protein; GTP-binding protein HSR1-like protein complement(1701290..1702114) Hyphomicrobium denitrificans ATCC 51888 9387559 YP_003755796.1 CDS Hden_1668 NC_014313.1 1702227 1703141 R KEGG: met:M446_4861 lipid A biosynthesis lauroyl acyltransferase; manually curated; PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(1702227..1703141) Hyphomicrobium denitrificans ATCC 51888 9387560 YP_003755797.1 CDS Hden_1669 NC_014313.1 1703218 1704450 R KEGG: bja:blr4586 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(1703218..1704450) Hyphomicrobium denitrificans ATCC 51888 9387561 YP_003755798.1 CDS Hden_1670 NC_014313.1 1704695 1706035 D KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein 1704695..1706035 Hyphomicrobium denitrificans ATCC 51888 9387562 YP_003755799.1 CDS Hden_1671 NC_014313.1 1706095 1706637 D KEGG: bch:Bcen2424_6260 Sel1 domain-containing protein; hypothetical protein 1706095..1706637 Hyphomicrobium denitrificans ATCC 51888 9387563 YP_003755800.1 CDS Hden_1672 NC_014313.1 1706899 1707228 D KEGG: pla:Plav_3142 septum formation initiator; hypothetical protein 1706899..1707228 Hyphomicrobium denitrificans ATCC 51888 9387564 YP_003755801.1 CDS Hden_1673 NC_014313.1 1707352 1707678 D KEGG: mpo:Mpop_2911 hypothetical protein; hypothetical protein 1707352..1707678 Hyphomicrobium denitrificans ATCC 51888 9387565 YP_003755802.1 CDS Hden_1674 NC_014313.1 1707918 1708334 D KEGG: cai:Caci_4566 membrane protein of uknown function UCP014873; hypothetical protein 1707918..1708334 Hyphomicrobium denitrificans ATCC 51888 9387566 YP_003755803.1 CDS Hden_1675 NC_014313.1 1708573 1708860 D KEGG: sti:Sthe_0729 RNA polymerase, sigma 70 subunit, RpoD subfamily; hypothetical protein 1708573..1708860 Hyphomicrobium denitrificans ATCC 51888 9387567 YP_003755804.1 CDS Hden_1676 NC_014313.1 1708953 1709207 D KEGG: rlg:Rleg_1802 hypothetical protein; hypothetical protein 1708953..1709207 Hyphomicrobium denitrificans ATCC 51888 9387568 YP_003755805.1 CDS Hden_1677 NC_014313.1 1709345 1709809 D PFAM: cyclase/dehydrase; KEGG: mlo:mlr0393 hypothetical protein; cyclase/dehydrase 1709345..1709809 Hyphomicrobium denitrificans ATCC 51888 9387569 YP_003755806.1 CDS Hden_1678 NC_014313.1 1710038 1710886 R PFAM: pentapeptide repeat protein; KEGG: gbe:GbCGDNIH1_1873 pentapeptide repeat-containing protein; pentapeptide repeat protein complement(1710038..1710886) Hyphomicrobium denitrificans ATCC 51888 9387570 YP_003755807.1 CDS Hden_1679 NC_014313.1 1710883 1711374 R PFAM: damage inducible protein CinA; KEGG: msl:Msil_0525 CinA domain protein; damage inducible protein CinA complement(1710883..1711374) Hyphomicrobium denitrificans ATCC 51888 9387571 YP_003755808.1 CDS Hden_1680 NC_014313.1 1711503 1711988 R KEGG: bph:Bphy_5178 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator complement(1711503..1711988) Hyphomicrobium denitrificans ATCC 51888 9387572 YP_003755809.1 CDS Hden_1681 NC_014313.1 1712151 1712768 R PFAM: cation efflux protein; KEGG: mes:Meso_4140 transporter; cation efflux protein complement(1712151..1712768) Hyphomicrobium denitrificans ATCC 51888 9387573 YP_003755810.1 CDS Hden_1682 NC_014313.1 1712773 1713960 R KEGG: mlo:mll0395 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1712773..1713960) Hyphomicrobium denitrificans ATCC 51888 9387574 YP_003755811.1 CDS Hden_1683 NC_014313.1 1714184 1715170 D KEGG: pla:Plav_3131 nifR3 family TIM-barrel protein; TIGRFAM: hypothetical protein; PFAM: dihydrouridine synthase DuS; hypothetical protein 1714184..1715170 Hyphomicrobium denitrificans ATCC 51888 9387575 YP_003755812.1 CDS Hden_1684 NC_014313.1 1715167 1716330 D KEGG: xau:Xaut_4400 signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; nitrogen specific signal transduction histidine kinase NtrB 1715167..1716330 Hyphomicrobium denitrificans ATCC 51888 9387576 YP_003755813.1 CDS Hden_1685 NC_014313.1 1716330 1717775 D TIGRFAM: nitrogen regulation protein NR(I); PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; KEGG: azc:AZC_3086 nitrogen assimilation regulatory protein NtrC; SMART: response regulator receiver; ATPase AAA; Fis family nitrogen metabolism transcriptional regulator NtrC 1716330..1717775 Hyphomicrobium denitrificans ATCC 51888 9387577 YP_003755814.1 CDS Hden_1686 NC_014313.1 1718013 1720373 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: azc:AZC_3084 nitrogen regulation protein NtrY; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 1718013..1720373 Hyphomicrobium denitrificans ATCC 51888 9387578 YP_003755815.1 CDS Hden_1687 NC_014313.1 1720405 1721805 D KEGG: mno:Mnod_6543 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; Fis family two component sigma-54 specific transcriptional regulator 1720405..1721805 Hyphomicrobium denitrificans ATCC 51888 9387579 YP_003755816.1 CDS Hden_1688 NC_014313.1 1721821 1722684 D PFAM: aminotransferase class IV; KEGG: xau:Xaut_4394 aminotransferase class IV; class IV aminotransferase 1721821..1722684 Hyphomicrobium denitrificans ATCC 51888 9387580 YP_003755817.1 CDS Hden_1689 NC_014313.1 1722854 1723102 D KEGG: xau:Xaut_4393 RNA chaperone Hfq; TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; RNA chaperone Hfq 1722854..1723102 Hyphomicrobium denitrificans ATCC 51888 9387581 YP_003755818.1 CDS Hden_1690 NC_014313.1 1723099 1724502 D KEGG: rle:RL2285 GTP-binding protein; TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; GTP-binding proten HflX 1723099..1724502 Hyphomicrobium denitrificans ATCC 51888 9387582 YP_003755819.1 CDS Hden_1691 NC_014313.1 1724525 1725751 D KEGG: pla:Plav_3170 hypothetical protein; manually curated; PFAM: monooxygenase FAD-binding; FAD-binding monooxygenase protein 1724525..1725751 Hyphomicrobium denitrificans ATCC 51888 9387583 YP_003755820.1 CDS Hden_1692 NC_014313.1 1725748 1726755 R KEGG: bra:BRADO3851 nucleoside triphosphate pyrophosphohydrolase; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; MazG family protein complement(1725748..1726755) Hyphomicrobium denitrificans ATCC 51888 9387584 YP_003755821.1 CDS Hden_1693 NC_014313.1 1726825 1727517 R KEGG: pna:Pnap_4852 hypothetical protein; hypothetical protein complement(1726825..1727517) Hyphomicrobium denitrificans ATCC 51888 9387585 YP_003755822.1 CDS Hden_1694 NC_014313.1 1727591 1728004 D KEGG: lch:Lcho_1797 hypothetical protein; hypothetical protein 1727591..1728004 Hyphomicrobium denitrificans ATCC 51888 9387586 YP_003755823.1 CDS Hden_1695 NC_014313.1 1728001 1728516 D PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_3268 acetyltransferase; GCN5-like N-acetyltransferase 1728001..1728516 Hyphomicrobium denitrificans ATCC 51888 9387587 YP_003755824.1 CDS Hden_1696 NC_014313.1 1728584 1729309 D KEGG: pap:PSPA7_0354 hypothetical protein; hypothetical protein 1728584..1729309 Hyphomicrobium denitrificans ATCC 51888 9387588 YP_003755825.1 CDS Hden_1697 NC_014313.1 1729326 1729679 D KEGG: ank:AnaeK_4223 hypothetical protein; hypothetical protein 1729326..1729679 Hyphomicrobium denitrificans ATCC 51888 9387589 YP_003755826.1 CDS Hden_1698 NC_014313.1 1729748 1730389 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: rlt:Rleg2_2224 bifunctional deaminase-reductase domain protein; bifunctional deaminase-reductase domain-containing protein 1729748..1730389 Hyphomicrobium denitrificans ATCC 51888 9387590 YP_003755827.1 CDS Hden_1699 NC_014313.1 1730547 1732076 R KEGG: mes:Meso_1756 leucyl aminopeptidase; PFAM: peptidase M17 leucyl aminopeptidase domain protein; leucyl aminopeptidase complement(1730547..1732076) Hyphomicrobium denitrificans ATCC 51888 9387591 YP_003755828.1 CDS Hden_1700 NC_014313.1 1732430 1733626 D PFAM: permease YjgP/YjgQ family protein; KEGG: mno:Mnod_5836 permease YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1732430..1733626 Hyphomicrobium denitrificans ATCC 51888 9387592 YP_003755829.1 CDS Hden_1701 NC_014313.1 1733623 1734717 D PFAM: permease YjgP/YjgQ family protein; KEGG: mrd:Mrad2831_0555 permease YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1733623..1734717 Hyphomicrobium denitrificans ATCC 51888 9387593 YP_003755830.1 CDS Hden_1702 NC_014313.1 1734721 1737198 D PFAM: organic solvent tolerance protein; OstA family protein; KEGG: azc:AZC_4323 organic solvent tolerance protein-like precursor; organic solvent tolerance protein 1734721..1737198 Hyphomicrobium denitrificans ATCC 51888 9387594 YP_003755831.1 CDS Hden_1703 NC_014313.1 1737325 1738653 D PFAM: SurA domain; KEGG: rpt:Rpal_3474 SurA domain; SurA domain-containing protein 1737325..1738653 Hyphomicrobium denitrificans ATCC 51888 9387595 YP_003755832.1 CDS Hden_1704 NC_014313.1 1738656 1739717 D TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; KEGG: rpt:Rpal_3475 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 1738656..1739717 Hyphomicrobium denitrificans ATCC 51888 9387596 YP_003755833.1 CDS Hden_1705 NC_014313.1 1739714 1740586 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: mes:Meso_1762 dimethyladenosine transferase; SMART: ribosomal RNA adenine methylase transferase-like; dimethyladenosine transferase 1739714..1740586 Hyphomicrobium denitrificans ATCC 51888 9387597 YP_003755834.1 CDS Hden_1706 NC_014313.1 1740583 1741233 R SMART: guanylate kinase/L-type calcium channel region; TIGRFAM: guanylate kinase; KEGG: bra:BRADO3317 guanylate kinase; PFAM: guanylate kinase; guanylate kinase complement(1740583..1741233) Hyphomicrobium denitrificans ATCC 51888 9387598 YP_003755835.1 CDS Hden_1707 NC_014313.1 1741261 1742151 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: mag:amb0747 hypothetical protein; YicC domain-containing protein complement(1741261..1742151) Hyphomicrobium denitrificans ATCC 51888 9387599 YP_003755836.1 CDS Hden_1708 NC_014313.1 1742248 1743654 R PFAM: aminodeoxychorismate lyase; KEGG: rpt:Rpal_3481 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(1742248..1743654) Hyphomicrobium denitrificans ATCC 51888 9387600 YP_003755837.1 CDS Hden_1709 NC_014313.1 1743791 1745053 R KEGG: rpt:Rpal_3482 3-oxoacyl-(acyl carrier protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: beta-ketoacyl synthase; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(1743791..1745053) Hyphomicrobium denitrificans ATCC 51888 9387601 YP_003755838.1 CDS Hden_1710 NC_014313.1 1745194 1745436 R KEGG: nha:Nham_2352 acyl carrier protein; TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; acyl carrier protein complement(1745194..1745436) Hyphomicrobium denitrificans ATCC 51888 9387602 YP_003755839.1 CDS Hden_1711 NC_014313.1 1745836 1746582 R KEGG: xau:Xaut_3115 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; 3-oxoacyl-(acyl-carrier-protein) reductase complement(1745836..1746582) Hyphomicrobium denitrificans ATCC 51888 9387603 YP_003755840.1 CDS Hden_1712 NC_014313.1 1746593 1747540 R KEGG: rpd:RPD_2983 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase; malonyl CoA-acyl carrier protein transacylase complement(1746593..1747540) Hyphomicrobium denitrificans ATCC 51888 9387604 YP_003755841.1 CDS Hden_1713 NC_014313.1 1747682 1748206 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nha:Nham_3678 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(1747682..1748206) Hyphomicrobium denitrificans ATCC 51888 9387605 YP_003755842.1 CDS Hden_1714 NC_014313.1 1748540 1749352 D KEGG: hau:Haur_0515 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; band 7 protein 1748540..1749352 Hyphomicrobium denitrificans ATCC 51888 9387606 YP_003755843.1 CDS Hden_1715 NC_014313.1 1749385 1749630 R KEGG: mgi:Mflv_3597 prolipoprotein diacylglyceryl transferase; hypothetical protein complement(1749385..1749630) Hyphomicrobium denitrificans ATCC 51888 9387607 YP_003755844.1 CDS Hden_1716 NC_014313.1 1750025 1750564 D KEGG: pla:Plav_3361 ribosomal protein S6; TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 1750025..1750564 Hyphomicrobium denitrificans ATCC 51888 9387608 YP_003755845.1 CDS Hden_1717 NC_014313.1 1750568 1750822 D KEGG: mag:amb2101 30S ribosomal protein S18; TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; 30S ribosomal protein S18 1750568..1750822 Hyphomicrobium denitrificans ATCC 51888 9387609 YP_003755846.1 CDS Hden_1718 NC_014313.1 1750931 1751881 D KEGG: rpd:RPD_2987 hypothetical protein; hypothetical protein 1750931..1751881 Hyphomicrobium denitrificans ATCC 51888 9387610 YP_003755847.1 CDS Hden_1719 NC_014313.1 1751929 1752513 D KEGG: oan:Oant_0566 50S ribosomal protein L9; TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9-like; 50S ribosomal protein L9 1751929..1752513 Hyphomicrobium denitrificans ATCC 51888 9387611 YP_003755848.1 CDS Hden_1720 NC_014313.1 1752677 1754188 D TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase; KEGG: msl:Msil_0416 replicative DNA helicase; SMART: ATPase AAA; replicative DNA helicase 1752677..1754188 Hyphomicrobium denitrificans ATCC 51888 9387612 YP_003755849.1 CDS Hden_1721 NC_014313.1 1754210 1755352 D TIGRFAM: alanine racemase; KEGG: rpe:RPE_3334 alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 1754210..1755352 Hyphomicrobium denitrificans ATCC 51888 9387613 YP_003755850.1 CDS Hden_1722 NC_014313.1 1755352 1756728 D TIGRFAM: DNA repair protein RadA; PFAM: DnaB domain protein helicase; KEGG: nwi:Nwi_2015 DNA repair protein RadA; SMART: ATPase AAA; DNA repair protein RadA 1755352..1756728 Hyphomicrobium denitrificans ATCC 51888 9387614 YP_003755851.1 CDS Hden_1723 NC_014313.1 1756784 1757416 D PFAM: colicin V production protein; KEGG: azc:AZC_0534 uncharacterized membrane protein; colicin V production protein 1756784..1757416 Hyphomicrobium denitrificans ATCC 51888 9387615 YP_003755852.1 CDS Hden_1724 NC_014313.1 1757506 1758987 D KEGG: bid:Bind_2311 amidophosphoribosyltransferase; TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; amidophosphoribosyltransferase 1757506..1758987 Hyphomicrobium denitrificans ATCC 51888 9387616 YP_003755853.1 CDS Hden_1725 NC_014313.1 1759027 1759812 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mno:Mnod_4628 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1759027..1759812 Hyphomicrobium denitrificans ATCC 51888 9387617 YP_003755854.1 CDS Hden_1726 NC_014313.1 1760003 1760407 D PFAM: protein of unknown function DUF930; KEGG: nha:Nham_0170 hypothetical protein; hypothetical protein 1760003..1760407 Hyphomicrobium denitrificans ATCC 51888 9387618 YP_003755855.1 CDS Hden_1727 NC_014313.1 1760447 1761244 R KEGG: bid:Bind_1532 metal-dependent hydrolase; metal-dependent hydrolase complement(1760447..1761244) Hyphomicrobium denitrificans ATCC 51888 9387619 YP_003755856.1 CDS Hden_1728 NC_014313.1 1761241 1762050 R KEGG: nwi:Nwi_1461 TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; hydrolase, TatD family complement(1761241..1762050) Hyphomicrobium denitrificans ATCC 51888 9387620 YP_003755857.1 CDS Hden_1729 NC_014313.1 1762050 1763612 R KEGG: rhi:NGR_c16040 methionyl-tRNA synthetase; TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); methionyl-tRNA synthetase complement(1762050..1763612) Hyphomicrobium denitrificans ATCC 51888 9387621 YP_003755858.1 CDS Hden_1730 NC_014313.1 1763662 1764783 R SMART: ATPase AAA; KEGG: pla:Plav_3112 DNA replication ATPase; ATPase AAA complement(1763662..1764783) Hyphomicrobium denitrificans ATCC 51888 9387622 YP_003755859.1 CDS Hden_1731 NC_014313.1 1764783 1765412 R TIGRFAM: thymidylate kinase; KEGG: pzu:PHZ_c1605 thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase complement(1764783..1765412) Hyphomicrobium denitrificans ATCC 51888 9387623 YP_003755860.1 CDS Hden_1732 NC_014313.1 1765442 1766635 R KEGG: mea:Mex_1p3122 penicillin binding protein, beta-lactamase/transpeptidase-like superfamily; PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; serine-type D-Ala-D-Ala carboxypeptidase complement(1765442..1766635) Hyphomicrobium denitrificans ATCC 51888 9387624 YP_003755861.1 CDS Hden_1733 NC_014313.1 1766744 1767877 R KEGG: bmr:BMI_I991 lipoprotein A family protein; TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; sporulation domain protein; lipoprotein A complement(1766744..1767877) Hyphomicrobium denitrificans ATCC 51888 9387625 YP_003755862.1 CDS Hden_1734 NC_014313.1 1768349 1769605 D PFAM: integrase family protein; KEGG: nmu:Nmul_A0922 phage integrase; integrase family protein 1768349..1769605 Hyphomicrobium denitrificans ATCC 51888 9387627 YP_003755863.1 CDS Hden_1735 NC_014313.1 1769592 1770392 D KEGG: lma:LmjF34.0690 hypothetical protein; hypothetical protein 1769592..1770392 Hyphomicrobium denitrificans ATCC 51888 9387628 YP_003755864.1 CDS Hden_1736 NC_014313.1 1770469 1770774 D TIGRFAM: DNA binding domain protein, excisionase family; KEGG: bmr:BMI_II1049 phage excisionase; excisionase family DNA binding domain-containing protein 1770469..1770774 Hyphomicrobium denitrificans ATCC 51888 9387629 YP_003755865.1 CDS Hden_1737 NC_014313.1 1770924 1771796 D KEGG: oca:OCAR_6148 virulence-associated protein E; hypothetical protein 1770924..1771796 Hyphomicrobium denitrificans ATCC 51888 9387630 YP_003755866.1 CDS Hden_1738 NC_014313.1 1771793 1772998 D TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: dia:Dtpsy_3221 phage/plasmid primase, P4 family; SMART: primase P4; phage/plasmid primase, P4 family 1771793..1772998 Hyphomicrobium denitrificans ATCC 51888 9387631 YP_003755867.1 CDS Hden_1742 NC_014313.1 1773550 1776708 R KEGG: xau:Xaut_4833 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump complement(1773550..1776708) Hyphomicrobium denitrificans ATCC 51888 9387635 YP_003755868.1 CDS Hden_1743 NC_014313.1 1776705 1778177 R KEGG: nwi:Nwi_3130 secretion protein HlyD; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(1776705..1778177) Hyphomicrobium denitrificans ATCC 51888 9387636 YP_003755869.1 CDS Hden_1744 NC_014313.1 1778174 1778569 R KEGG: xau:Xaut_3974 hypothetical protein; hypothetical protein complement(1778174..1778569) Hyphomicrobium denitrificans ATCC 51888 9387637 YP_003755870.1 CDS Hden_1745 NC_014313.1 1778747 1779127 D KEGG: sye:Syncc9902_0017 hypothetical protein; hypothetical protein 1778747..1779127 Hyphomicrobium denitrificans ATCC 51888 9387638 YP_003755871.1 CDS Hden_1746 NC_014313.1 1779124 1779777 R PFAM: cation efflux protein; KEGG: oca:OCAR_6177 cation efflux permease; cation efflux protein complement(1779124..1779777) Hyphomicrobium denitrificans ATCC 51888 9387639 YP_003755872.1 CDS Hden_1747 NC_014313.1 1779843 1780268 D KEGG: rru:Rru_A1026 MerR family transcriptional regulator; PFAM: transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; MerR family transcriptional regulator 1779843..1780268 Hyphomicrobium denitrificans ATCC 51888 9387640 YP_003755873.1 CDS Hden_1749 NC_014313.1 1781383 1782105 R KEGG: bmi:BMEA_A1674 outer membrane protein Omp31; hypothetical protein complement(1781383..1782105) Hyphomicrobium denitrificans ATCC 51888 9387642 YP_003755874.1 CDS Hden_1750 NC_014313.1 1782415 1783110 R PFAM: protein of unknown function DUF125 transmembrane; KEGG: oca:OCAR_4872 H3U; hypothetical protein complement(1782415..1783110) Hyphomicrobium denitrificans ATCC 51888 9387643 YP_003755875.1 CDS Hden_1751 NC_014313.1 1783956 1786376 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nha:Nham_0957 TonB-dependent receptor; TonB-dependent receptor 1783956..1786376 Hyphomicrobium denitrificans ATCC 51888 9387644 YP_003755876.1 CDS Hden_1752 NC_014313.1 1786463 1787506 D PFAM: periplasmic binding protein; KEGG: nha:Nham_0956 periplasmic binding protein; periplasmic binding protein 1786463..1787506 Hyphomicrobium denitrificans ATCC 51888 9387645 YP_003755877.1 CDS Hden_1753 NC_014313.1 1787556 1788599 D PFAM: luciferase; KEGG: nha:Nham_0958 luciferase-like; luciferase 1787556..1788599 Hyphomicrobium denitrificans ATCC 51888 9387646 YP_003755878.1 CDS Hden_1754 NC_014313.1 1788596 1789615 D PFAM: transporter permease; KEGG: nha:Nham_0954 transporter permease; transporter permease 1788596..1789615 Hyphomicrobium denitrificans ATCC 51888 9387647 YP_003755879.1 CDS Hden_1755 NC_014313.1 1789642 1790451 D KEGG: nha:Nham_0955 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 1789642..1790451 Hyphomicrobium denitrificans ATCC 51888 9387648 YP_003755880.1 CDS Hden_1756 NC_014313.1 1790574 1791446 R KEGG: eli:ELI_04750 hypothetical protein; hypothetical protein complement(1790574..1791446) Hyphomicrobium denitrificans ATCC 51888 9387649 YP_003755881.1 CDS Hden_1757 NC_014313.1 1791515 1792174 R KEGG: cai:Caci_8233 hypothetical protein; hypothetical protein complement(1791515..1792174) Hyphomicrobium denitrificans ATCC 51888 9387650 YP_003755882.1 CDS Hden_1758 NC_014313.1 1792167 1792508 R PFAM: transcriptional regulator PadR family protein; KEGG: sli:Slin_6512 PadR family transcriptional regulator; PadR family transcriptional regulator complement(1792167..1792508) Hyphomicrobium denitrificans ATCC 51888 9387651 YP_003755883.1 CDS Hden_1759 NC_014313.1 1792825 1793166 D KEGG: nmu:Nmul_A1285 cupin region; manually curated; PFAM: cupin; cupin 1792825..1793166 Hyphomicrobium denitrificans ATCC 51888 9387652 YP_003755884.1 CDS Hden_1760 NC_014313.1 1793189 1793371 R KEGG: ddi:DDBDRAFT_0217139 hypothetical protein; hypothetical protein complement(1793189..1793371) Hyphomicrobium denitrificans ATCC 51888 9387653 YP_003755885.1 CDS Hden_1761 NC_014313.1 1793530 1793649 R hypothetical protein complement(1793530..1793649) Hyphomicrobium denitrificans ATCC 51888 9387654 YP_003755886.1 CDS Hden_1762 NC_014313.1 1793953 1794438 R KEGG: bid:Bind_2062 hypothetical protein; hypothetical protein complement(1793953..1794438) Hyphomicrobium denitrificans ATCC 51888 9387655 YP_003755887.1 CDS Hden_1763 NC_014313.1 1794498 1794866 R KEGG: hut:Huta_2122 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; hypothetical protein complement(1794498..1794866) Hyphomicrobium denitrificans ATCC 51888 9387656 YP_003755888.1 CDS Hden_1764 NC_014313.1 1794874 1795749 R PFAM: cobyrinic acid ac-diamide synthase; KEGG: hba:Hbal_2118 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(1794874..1795749) Hyphomicrobium denitrificans ATCC 51888 9387657 YP_003755889.1 CDS Hden_1765 NC_014313.1 1795746 1796294 R KEGG: rpc:RPC_4740 hypothetical protein; hypothetical protein complement(1795746..1796294) Hyphomicrobium denitrificans ATCC 51888 9387658 YP_003755890.1 CDS Hden_1766 NC_014313.1 1796465 1798309 R KEGG: mno:Mnod_4585 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; integral membrane sensor hybrid histidine kinase complement(1796465..1798309) Hyphomicrobium denitrificans ATCC 51888 9387659 YP_003755891.1 CDS Hden_1767 NC_014313.1 1798251 1798568 R KEGG: bpd:BURPS668_A1670 AMP-binding domain-containing protein; AMP-binding domain-containing protein complement(1798251..1798568) Hyphomicrobium denitrificans ATCC 51888 9387660 YP_003755892.1 CDS Hden_1768 NC_014313.1 1799382 1800668 R TIGRFAM: enolase; KEGG: rru:Rru_A1885 phosphopyruvate hydratase; PFAM: Enolase-like; enolase complement(1799382..1800668) Hyphomicrobium denitrificans ATCC 51888 9387661 YP_003755893.1 CDS Hden_1769 NC_014313.1 1800814 1801173 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: ank:AnaeK_3374 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 1800814..1801173 Hyphomicrobium denitrificans ATCC 51888 9387662 YP_003755894.1 CDS Hden_1770 NC_014313.1 1801177 1801875 D KEGG: hne:HNE_0531 ExsB protein; TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; exsB protein 1801177..1801875 Hyphomicrobium denitrificans ATCC 51888 9387663 YP_003755895.1 CDS Hden_1771 NC_014313.1 1801854 1802099 D KEGG: mfa:Mfla_2600 hypothetical protein; hypothetical protein 1801854..1802099 Hyphomicrobium denitrificans ATCC 51888 9387664 YP_003755896.1 CDS Hden_1772 NC_014313.1 1802106 1802591 R PFAM: thioesterase superfamily protein; KEGG: bbt:BBta_4125 hypothetical protein; thioesterase superfamily protein complement(1802106..1802591) Hyphomicrobium denitrificans ATCC 51888 9387665 YP_003755897.1 CDS Hden_1773 NC_014313.1 1802923 1803951 D KEGG: dhd:Dhaf_1545 radical SAM protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 1802923..1803951 Hyphomicrobium denitrificans ATCC 51888 9387666 YP_003755898.1 CDS Hden_1774 NC_014313.1 1804114 1804740 D PFAM: radical SAM protein; KEGG: bph:Bphy_0044 radical SAM domain-containing protein; radical SAM protein 1804114..1804740 Hyphomicrobium denitrificans ATCC 51888 9387667 YP_003755899.1 CDS Hden_1775 NC_014313.1 1804791 1805213 D PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: pla:Plav_3150 6-pyruvoyl tetrahydropterin synthase; hypothetical protein 1804791..1805213 Hyphomicrobium denitrificans ATCC 51888 9387668 YP_003755900.1 CDS Hden_1776 NC_014313.1 1805219 1805677 D TIGRFAM: 7-cyano-7-deazaguanine reductase; KEGG: rpt:Rpal_3217 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; 7-cyano-7-deazaguanine reductase 1805219..1805677 Hyphomicrobium denitrificans ATCC 51888 9387669 YP_003755901.1 CDS Hden_1777 NC_014313.1 1805721 1806014 R KEGG: mno:Mnod_1552 VrrB protein; hypothetical protein complement(1805721..1806014) Hyphomicrobium denitrificans ATCC 51888 9387670 YP_003755902.1 CDS Hden_1778 NC_014313.1 1806317 1807252 R PFAM: pirin; KEGG: mdi:METDI0066 pirin-like protein; pirin complement(1806317..1807252) Hyphomicrobium denitrificans ATCC 51888 9387671 YP_003755903.1 CDS Hden_1779 NC_014313.1 1807409 1807813 D PFAM: protein of unknown function DUF1311; KEGG: rhi:NGR_c25020 urease-associated protein; hypothetical protein 1807409..1807813 Hyphomicrobium denitrificans ATCC 51888 9387672 YP_003755904.1 CDS Hden_1780 NC_014313.1 1808005 1808502 D PFAM: protein of unknown function DUF992; KEGG: oca:OCAR_7171 hypothetical protein; hypothetical protein 1808005..1808502 Hyphomicrobium denitrificans ATCC 51888 9387673 YP_003755905.1 CDS Hden_1781 NC_014313.1 1808499 1810451 R TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); threonyl/alanyl tRNA synthetase SAD; TGS domain protein; anticodon-binding domain protein; KEGG: msl:Msil_3538 threonyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase SAD; threonyl-tRNA synthetase complement(1808499..1810451) Hyphomicrobium denitrificans ATCC 51888 9387674 YP_003755906.1 CDS Hden_1782 NC_014313.1 1810683 1811165 D KEGG: tkm:TK90_0176 glycogen/starch/alpha-glucan phosphorylase; hypothetical protein 1810683..1811165 Hyphomicrobium denitrificans ATCC 51888 9387675 YP_003755907.1 CDS Hden_1783 NC_014313.1 1811141 1811446 R PFAM: protein of unknown function DUF37; KEGG: pla:Plav_2667 hypothetical protein; hypothetical protein complement(1811141..1811446) Hyphomicrobium denitrificans ATCC 51888 9387676 YP_003755908.1 CDS Hden_1784 NC_014313.1 1811564 1812226 R KEGG: prw:PsycPRwf_1942 hypothetical protein; hypothetical protein complement(1811564..1812226) Hyphomicrobium denitrificans ATCC 51888 9387677 YP_003755909.1 CDS Hden_1785 NC_014313.1 1812475 1812933 R KEGG: mrd:Mrad2831_4640 NifU domain-containing protein; NifU domain-containing protein complement(1812475..1812933) Hyphomicrobium denitrificans ATCC 51888 9387678 YP_003755910.1 CDS Hden_1786 NC_014313.1 1813069 1813680 D TIGRFAM: GTP cyclohydrolase I; KEGG: pzu:PHZ_c0417 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; GTP cyclohydrolase I 1813069..1813680 Hyphomicrobium denitrificans ATCC 51888 9387679 YP_003755911.1 CDS Hden_1787 NC_014313.1 1813705 1814154 D KEGG: oan:Oant_2159 phosphoribosyl-AMP cyclohydrolase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 1813705..1814154 Hyphomicrobium denitrificans ATCC 51888 9387680 YP_003755912.1 CDS Hden_1788 NC_014313.1 1814333 1815352 D PFAM: patatin; KEGG: xau:Xaut_1647 patatin; patatin 1814333..1815352 Hyphomicrobium denitrificans ATCC 51888 9387681 YP_003755913.1 CDS Hden_1789 NC_014313.1 1815334 1815765 R KEGG: pla:Plav_2661 signal-transduction protein; PFAM: CBS domain containing protein; SMART: CBS domain containing protein; signal transduction protein complement(1815334..1815765) Hyphomicrobium denitrificans ATCC 51888 9387682 YP_003755914.1 CDS Hden_1790 NC_014313.1 1815944 1816672 R PFAM: rhomboid family protein; KEGG: pla:Plav_2653 rhomboid family protein; rhomboid family protein complement(1815944..1816672) Hyphomicrobium denitrificans ATCC 51888 9387683 YP_003755915.1 CDS Hden_1791 NC_014313.1 1816884 1817516 D PFAM: protein of unknown function DUF1457; KEGG: mes:Meso_1724 hypothetical protein; hypothetical protein 1816884..1817516 Hyphomicrobium denitrificans ATCC 51888 9387684 YP_003755916.1 CDS Hden_1792 NC_014313.1 1817700 1818326 D PFAM: type IV pilus assembly PilZ; KEGG: mrd:Mrad2831_4632 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1817700..1818326 Hyphomicrobium denitrificans ATCC 51888 9387685 YP_003755917.1 CDS Hden_1793 NC_014313.1 1818486 1819172 D PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: azc:AZC_3670 transglutaminase-like cysteine peptidase; transglutaminase 1818486..1819172 Hyphomicrobium denitrificans ATCC 51888 9387686 YP_003755918.1 CDS Hden_1794 NC_014313.1 1819279 1819812 R KEGG: pla:Plav_2634 hexapaptide repeat-containing transferase; transferase complement(1819279..1819812) Hyphomicrobium denitrificans ATCC 51888 9387687 YP_003755919.1 CDS Hden_1795 NC_014313.1 1819831 1820046 R KEGG: oan:Oant_1927 hypothetical protein; hypothetical protein complement(1819831..1820046) Hyphomicrobium denitrificans ATCC 51888 9387688 YP_003755920.1 CDS Hden_1796 NC_014313.1 1820068 1820895 R KEGG: rhi:NGR_c13220 serine acetyltransferase, CysE; TIGRFAM: serine O-acetyltransferase; PFAM: serine acetyltransferase domain protein; serine O-acetyltransferase complement(1820068..1820895) Hyphomicrobium denitrificans ATCC 51888 9387689 YP_003755921.1 CDS Hden_1797 NC_014313.1 1821125 1821925 D PFAM: enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_2620 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1821125..1821925 Hyphomicrobium denitrificans ATCC 51888 9387690 YP_003755922.1 CDS Hden_1798 NC_014313.1 1821922 1823061 D PFAM: polysaccharide deacetylase; KEGG: azc:AZC_1060 polysaccharide deacetylase; polysaccharide deacetylase 1821922..1823061 Hyphomicrobium denitrificans ATCC 51888 9387691 YP_003755923.1 CDS Hden_1799 NC_014313.1 1823078 1823560 D PFAM: GCN5-related N-acetyltransferase; KEGG: mag:amb3944 hypothetical protein; GCN5-like N-acetyltransferase 1823078..1823560 Hyphomicrobium denitrificans ATCC 51888 9387692 YP_003755924.1 CDS Hden_1800 NC_014313.1 1824202 1826895 R PFAM: dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; manually curated; KEGG: azc:AZC_4341 B12-dependent methionine synthase; TIGRFAM: methionine synthase; methionine synthase complement(1824202..1826895) Hyphomicrobium denitrificans ATCC 51888 9387693 YP_003755925.1 CDS Hden_1801 NC_014313.1 1826906 1827967 R PFAM: homocysteine S-methyltransferase; KEGG: pmy:Pmen_2159 B12-dependent methionine synthase; homocysteine S-methyltransferase complement(1826906..1827967) Hyphomicrobium denitrificans ATCC 51888 9387694 YP_003755926.1 CDS Hden_1802 NC_014313.1 1827996 1828913 R TIGRFAM: 5,10-methylenetetrahydrofolate reductase; KEGG: met:M446_4365 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(1827996..1828913) Hyphomicrobium denitrificans ATCC 51888 9387695 YP_003755927.1 CDS Hden_1803 NC_014313.1 1828913 1829941 R KEGG: bmt:BSUIS_A1504 methyltransferase type 11; PFAM: methyltransferase type 11; regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator complement(1828913..1829941) Hyphomicrobium denitrificans ATCC 51888 9387696 YP_003755928.1 CDS Hden_1804 NC_014313.1 1830083 1830718 D KEGG: fal:FRAAL4892 methyltransferase; hypothetical protein 1830083..1830718 Hyphomicrobium denitrificans ATCC 51888 9387697 YP_003755929.1 CDS Hden_1805 NC_014313.1 1830843 1831445 D PFAM: toluene tolerance family protein; KEGG: pla:Plav_2398 toluene tolerance family protein; toluene tolerance family protein 1830843..1831445 Hyphomicrobium denitrificans ATCC 51888 9387698 YP_003755930.1 CDS Hden_1806 NC_014313.1 1831716 1832432 D KEGG: bfo:BRAFLDRAFT_90440 hypothetical protein; hypothetical protein 1831716..1832432 Hyphomicrobium denitrificans ATCC 51888 9387699 YP_003755931.1 CDS Hden_1807 NC_014313.1 1832595 1834463 D KEGG: bbt:BBta_0007 hypothetical protein; hypothetical protein 1832595..1834463 Hyphomicrobium denitrificans ATCC 51888 9387700 YP_003755932.1 CDS Hden_1808 NC_014313.1 1834671 1836329 R KEGG: pla:Plav_2392 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(1834671..1836329) Hyphomicrobium denitrificans ATCC 51888 9387701 YP_003755933.1 CDS Hden_1809 NC_014313.1 1836454 1837485 R PFAM: protein of unknown function DUF1022; KEGG: pla:Plav_2310 hypothetical protein; hypothetical protein complement(1836454..1837485) Hyphomicrobium denitrificans ATCC 51888 9387702 YP_003755934.1 CDS Hden_1810 NC_014313.1 1837617 1838105 D KEGG: rsk:RSKD131_2975 transcriptional regulator, AsnC family; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type; AsnC family transcriptional regulator 1837617..1838105 Hyphomicrobium denitrificans ATCC 51888 9387703 YP_003755935.1 CDS Hden_1811 NC_014313.1 1838129 1838698 D KEGG: sru:SRU_0793 hypothetical protein; hypothetical protein 1838129..1838698 Hyphomicrobium denitrificans ATCC 51888 9387704 YP_003755936.1 CDS Hden_1812 NC_014313.1 1838730 1839203 R KEGG: pla:Plav_2312 transcription elongation factor GreA; TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; transcription elongation factor GreA complement(1838730..1839203) Hyphomicrobium denitrificans ATCC 51888 9387705 YP_003755937.1 CDS Hden_1813 NC_014313.1 1839345 1842620 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; carbamoyl-phosphate synthetase large chain domain protein; KEGG: azc:AZC_1145 carbamoyl-phosphate synthase large subunit; SMART: MGS domain protein; carbamoyl-phosphate synthase, large subunit complement(1839345..1842620) Hyphomicrobium denitrificans ATCC 51888 9387706 YP_003755938.1 CDS Hden_1814 NC_014313.1 1842785 1843999 R PFAM: major facilitator superfamily MFS_1; KEGG: mlo:mlr2687 fosmidomycin resistance protein; major facilitator superfamily protein complement(1842785..1843999) Hyphomicrobium denitrificans ATCC 51888 9387707 YP_003755939.1 CDS Hden_1815 NC_014313.1 1844126 1844887 R KEGG: mmi:MMAR_5455 hypothetical protein; hypothetical protein complement(1844126..1844887) Hyphomicrobium denitrificans ATCC 51888 9387708 YP_003755940.1 CDS Hden_1816 NC_014313.1 1844925 1845548 R KEGG: bid:Bind_1052 peptidase M22 glycoprotease; hypothetical protein complement(1844925..1845548) Hyphomicrobium denitrificans ATCC 51888 9387709 YP_003755941.1 CDS Hden_1817 NC_014313.1 1845662 1846861 R KEGG: pla:Plav_2314 carbamoyl-phosphate synthase, small subunit; TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; carbamoyl-phosphate synthase small chain; carbamoyl-phosphate synthase, small subunit complement(1845662..1846861) Hyphomicrobium denitrificans ATCC 51888 9387710 YP_003755942.1 CDS Hden_1818 NC_014313.1 1847031 1847468 D PFAM: protein of unknown function; KEGG: bte:BTH_II0619 GatB/YqeY family protein; hypothetical protein 1847031..1847468 Hyphomicrobium denitrificans ATCC 51888 9387711 YP_003755943.1 CDS Hden_1819 NC_014313.1 1847612 1849597 D TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; DNA primase, DnaB-helicase binding domain; TOPRIM domain protein; KEGG: bra:BRADO1353 DNA primase; SMART: Toprim sub domain protein; DNA primase 1847612..1849597 Hyphomicrobium denitrificans ATCC 51888 9387712 YP_003755944.1 CDS Hden_1820 NC_014313.1 1849710 1851710 D KEGG: pla:Plav_2317 RNA polymerase sigma factor RpoD; TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 1.1 domain protein; sigma-70 non-essential domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; RNA polymerase, sigma 70 subunit, RpoD 1849710..1851710 Hyphomicrobium denitrificans ATCC 51888 9387713 YP_003755945.1 CDS Hden_1821 NC_014313.1 1851767 1852081 R PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: vap:Vapar_4718 ethyl tert-butyl ether degradation EthD; Ethyl tert-butyl ether degradation EthD complement(1851767..1852081) Hyphomicrobium denitrificans ATCC 51888 9387714 YP_003755946.1 CDS Hden_1822 NC_014313.1 1852189 1852647 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: rpc:RPC_1206 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(1852189..1852647) Hyphomicrobium denitrificans ATCC 51888 9387715 YP_003755947.1 CDS Hden_1823 NC_014313.1 1852685 1853104 D PFAM: protein of unknown function UPF0047; KEGG: msl:Msil_2118 protein of unknown function UPF0047; hypothetical protein 1852685..1853104 Hyphomicrobium denitrificans ATCC 51888 9387716 YP_003755948.1 CDS Hden_1824 NC_014313.1 1853260 1853694 D PFAM: protein of unknown function DUF1486; KEGG: har:HEAR2043 hypothetical protein; hypothetical protein 1853260..1853694 Hyphomicrobium denitrificans ATCC 51888 9387717 YP_003755949.1 CDS Hden_1825 NC_014313.1 1853709 1854317 D KEGG: pde:Pden_2129 hypothetical protein; hypothetical protein 1853709..1854317 Hyphomicrobium denitrificans ATCC 51888 9387718 YP_003755950.1 CDS Hden_1826 NC_014313.1 1854314 1855225 D PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: nar:Saro_1044 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1854314..1855225 Hyphomicrobium denitrificans ATCC 51888 9387719 YP_003755951.1 CDS Hden_1827 NC_014313.1 1855234 1855971 R PFAM: protein of unknown function DUF541; KEGG: pde:Pden_1932 hypothetical protein; hypothetical protein complement(1855234..1855971) Hyphomicrobium denitrificans ATCC 51888 9387720 YP_003755952.1 CDS Hden_1828 NC_014313.1 1856666 1858057 D PFAM: citrate transporter; KEGG: divalent ion symporter; citrate transporter 1856666..1858057 Hyphomicrobium denitrificans ATCC 51888 9387722 YP_003755953.1 CDS Hden_1829 NC_014313.1 1858246 1858545 D KEGG: tcr:504081.50 mucin-associated surface protein (MASP); mucin-associated surface protein (MASP) 1858246..1858545 Hyphomicrobium denitrificans ATCC 51888 9387723 YP_003755954.1 CDS Hden_1830 NC_014313.1 1858648 1859001 R KEGG: oca:OCAR_6547 membrane protein; manually curated; PFAM: protein of unknown function DUF454; hypothetical protein complement(1858648..1859001) Hyphomicrobium denitrificans ATCC 51888 9387724 YP_003755955.1 CDS Hden_1831 NC_014313.1 1859188 1859592 D PFAM: GCN5-related N-acetyltransferase; KEGG: azl:AZL_d04650 hypothetical protein; GCN5-like N-acetyltransferase 1859188..1859592 Hyphomicrobium denitrificans ATCC 51888 9387725 YP_003755956.1 CDS Hden_1832 NC_014313.1 1859602 1860750 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: oca:OCAR_7167 L-lactate dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase complement(1859602..1860750) Hyphomicrobium denitrificans ATCC 51888 9387726 YP_003755957.1 CDS Hden_1833 NC_014313.1 1860793 1861170 R PFAM: protein of unknown function DUF369; KEGG: sfu:Sfum_3204 hypothetical protein; hypothetical protein complement(1860793..1861170) Hyphomicrobium denitrificans ATCC 51888 9387727 YP_003755958.1 CDS Hden_1834 NC_014313.1 1861442 1862686 R PFAM: beta-ketoacyl synthase; KEGG: rru:Rru_A0045 3-oxoacyl-[acyl-carrier-protein] synthase II; beta-ketoacyl synthase complement(1861442..1862686) Hyphomicrobium denitrificans ATCC 51888 9387728 YP_003755959.1 CDS Hden_1835 NC_014313.1 1862780 1863049 R PFAM: phosphopantetheine-binding; KEGG: mlo:mlr4951 NodF; phosphopantetheine-binding protein complement(1862780..1863049) Hyphomicrobium denitrificans ATCC 51888 9387729 YP_003755960.1 CDS Hden_1836 NC_014313.1 1863366 1865078 D PFAM: AMP-dependent synthetase and ligase; KEGG: rru:Rru_A1312 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1863366..1865078 Hyphomicrobium denitrificans ATCC 51888 9387730 YP_003755961.1 CDS Hden_1837 NC_014313.1 1865763 1867172 R TIGRFAM: cysteinyl-tRNA synthetase; KEGG: bbt:BBta_3498 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase complement(1865763..1867172) Hyphomicrobium denitrificans ATCC 51888 9387731 YP_003755962.1 CDS Hden_1838 NC_014313.1 1867459 1868661 D KEGG: rpa:RPA1995 hypothetical protein; hypothetical protein 1867459..1868661 Hyphomicrobium denitrificans ATCC 51888 9387732 YP_003755963.1 CDS Hden_1839 NC_014313.1 1868692 1870062 R KEGG: mch:Mchl_5220 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase complement(1868692..1870062) Hyphomicrobium denitrificans ATCC 51888 9387733 YP_003755964.1 CDS Hden_1840 NC_014313.1 1870130 1871857 R KEGG: pla:Plav_1103 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase complement(1870130..1871857) Hyphomicrobium denitrificans ATCC 51888 9387734 YP_003755965.1 CDS Hden_1841 NC_014313.1 1871954 1872367 R PFAM: UspA domain protein; KEGG: rxy:Rxyl_2521 hypothetical protein; UspA domain-containing protein complement(1871954..1872367) Hyphomicrobium denitrificans ATCC 51888 9387735 YP_003755966.1 CDS Hden_1842 NC_014313.1 1872542 1872700 R hypothetical protein complement(1872542..1872700) Hyphomicrobium denitrificans ATCC 51888 9387736 YP_003755967.1 CDS Hden_1843 NC_014313.1 1872789 1874192 R TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: mes:Meso_1462 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase complement(1872789..1874192) Hyphomicrobium denitrificans ATCC 51888 9387737 YP_003755968.1 CDS Hden_1844 NC_014313.1 1874326 1875081 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: eat:EAT1b_1814 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1874326..1875081) Hyphomicrobium denitrificans ATCC 51888 9387738 YP_003755969.1 CDS Hden_1845 NC_014313.1 1875137 1876516 R KEGG: msl:Msil_0122 glutathione-disulfide reductase; TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; glutathione-disulfide reductase complement(1875137..1876516) Hyphomicrobium denitrificans ATCC 51888 9387739 YP_003755970.1 CDS Hden_1846 NC_014313.1 1876533 1877051 R PFAM: protein of unknown function DUF2059; KEGG: xau:Xaut_3222 hypothetical protein; hypothetical protein complement(1876533..1877051) Hyphomicrobium denitrificans ATCC 51888 9387740 YP_003755971.1 CDS Hden_1847 NC_014313.1 1877051 1877776 R TIGRFAM: ribose 5-phosphate isomerase; KEGG: msl:Msil_0120 ribose 5-phosphate isomerase; PFAM: ribose 5-phosphate isomerase; ribose 5-phosphate isomerase complement(1877051..1877776) Hyphomicrobium denitrificans ATCC 51888 9387741 YP_003755972.1 CDS Hden_1848 NC_014313.1 1877947 1878630 D KEGG: mes:Meso_1458 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; phosphoglycolate phosphatase 1877947..1878630 Hyphomicrobium denitrificans ATCC 51888 9387742 YP_003755973.1 CDS Hden_1849 NC_014313.1 1878620 1878997 R KEGG: afr:AFE_0363 hypothetical protein; hypothetical protein complement(1878620..1878997) Hyphomicrobium denitrificans ATCC 51888 9387743 YP_003755974.1 CDS Hden_1850 NC_014313.1 1879070 1881382 R KEGG: msl:Msil_0077 membrane transporter; membrane transporter complement(1879070..1881382) Hyphomicrobium denitrificans ATCC 51888 9387744 YP_003755975.1 CDS Hden_1851 NC_014313.1 1881857 1882405 D KEGG: reu:Reut_A2882 lipoprotein; lipoprotein 1881857..1882405 Hyphomicrobium denitrificans ATCC 51888 9387746 YP_003755976.1 CDS Hden_1852 NC_014313.1 1882501 1883244 D TIGRFAM: peptide methionine sulfoxide reductase; KEGG: ara:Arad_4067 peptide methionine sulfoxide reductase protein; PFAM: methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 1882501..1883244 Hyphomicrobium denitrificans ATCC 51888 9387747 YP_003755977.1 CDS Hden_1853 NC_014313.1 1883373 1884551 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pzu:PHZ_c3319 ornithine decarboxylase; Orn/DAP/Arg decarboxylase 2 complement(1883373..1884551) Hyphomicrobium denitrificans ATCC 51888 9387748 YP_003755978.1 CDS Hden_1854 NC_014313.1 1884777 1887134 R KEGG: rba:RB617 WD-40 repeat-containing regulatory protein; hypothetical protein complement(1884777..1887134) Hyphomicrobium denitrificans ATCC 51888 9387749 YP_003755979.1 CDS Hden_1855 NC_014313.1 1887442 1887606 D hypothetical protein 1887442..1887606 Hyphomicrobium denitrificans ATCC 51888 9387750 YP_003755980.1 CDS Hden_1856 NC_014313.1 1887705 1888940 R KEGG: bja:bll4731 threonine dehydratase; TIGRFAM: threonine dehydratase; PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; threonine dehydratase complement(1887705..1888940) Hyphomicrobium denitrificans ATCC 51888 9387751 YP_003755981.1 CDS Hden_1857 NC_014313.1 1889160 1889819 D KEGG: ade:Adeh_4032 general secretory system II, protein E-like; hypothetical protein 1889160..1889819 Hyphomicrobium denitrificans ATCC 51888 9387752 YP_003755982.1 CDS Hden_1858 NC_014313.1 1889918 1890811 D KEGG: bmr:BMI_I948 oxidoreductase, PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyisobutyrate dehydrogenase 1889918..1890811 Hyphomicrobium denitrificans ATCC 51888 9387753 YP_003755983.1 CDS Hden_1859 NC_014313.1 1890824 1891324 R KEGG: bmr:BMI_I865 transcriptional regulator, AsnC family; PFAM: transcription regulator, AsnC-type-like; SMART: transcription regulator, AsnC-type; AsnC family transcriptional regulator complement(1890824..1891324) Hyphomicrobium denitrificans ATCC 51888 9387754 YP_003755984.1 CDS Hden_1860 NC_014313.1 1891434 1892045 R PFAM: glutathione S-transferase domain; KEGG: mlo:mll0559 glutathione S-transferase; glutathione S-transferase complement(1891434..1892045) Hyphomicrobium denitrificans ATCC 51888 9387755 YP_003755985.1 CDS Hden_1861 NC_014313.1 1892051 1892617 R PFAM: nuclease (SNase domain protein); KEGG: mlo:mll0560 succinoglycan biotynthesis protein ExoI; nuclease complement(1892051..1892617) Hyphomicrobium denitrificans ATCC 51888 9387756 YP_003755986.1 CDS Hden_1862 NC_014313.1 1892683 1894344 D KEGG: rpb:RPB_3395 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1892683..1894344 Hyphomicrobium denitrificans ATCC 51888 9387757 YP_003755987.1 CDS Hden_1863 NC_014313.1 1894351 1895055 D KEGG: mrd:Mrad2831_1975 transmembrane signal peptide protein; aspartyl protease-like protein 1894351..1895055 Hyphomicrobium denitrificans ATCC 51888 9387758 YP_003755988.1 CDS Hden_1864 NC_014313.1 1895099 1895668 D KEGG: mrd:Mrad2831_0576 hypothetical protein; aspartyl protease-like protein 1895099..1895668 Hyphomicrobium denitrificans ATCC 51888 9387759 YP_003755989.1 CDS Hden_1865 NC_014313.1 1895775 1897280 D PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase; KEGG: pla:Plav_1053 phosphoglucomutase/phosphomannomutase alpha/beta/subunit; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 1895775..1897280 Hyphomicrobium denitrificans ATCC 51888 9387760 YP_003755990.1 CDS Hden_1866 NC_014313.1 1897380 1898204 R PFAM: protein of unknown function DUF81; KEGG: atc:AGR_C_3499 hypothetical protein; hypothetical protein complement(1897380..1898204) Hyphomicrobium denitrificans ATCC 51888 9387761 YP_003755991.1 CDS Hden_1867 NC_014313.1 1898214 1899221 R manually curated; TIGRFAM: TIM-barrel protein, yjbN family; KEGG: bja:blr3734 tRNA-dihydrouridine synthase A; PFAM: dihydrouridine synthase DuS; TIM-barrel protein, yjbN family complement(1898214..1899221) Hyphomicrobium denitrificans ATCC 51888 9387762 YP_003755992.1 CDS Hden_1868 NC_014313.1 1899369 1900043 R PFAM: MOSC domain containing protein; 3-alpha domain protein; KEGG: xau:Xaut_5027 MOSC domain-containing protein; MOSC domain containing protein complement(1899369..1900043) Hyphomicrobium denitrificans ATCC 51888 9387763 YP_003755993.1 CDS Hden_1869 NC_014313.1 1900170 1901993 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: mrd:Mrad2831_0508 methanol/ethanol family PQQ-dependent dehydrogenase; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase complement(1900170..1901993) Hyphomicrobium denitrificans ATCC 51888 9387764 YP_003755994.1 CDS Hden_1870 NC_014313.1 1902350 1903867 D KEGG: nhl:Nhal_1084 regulatory protein GntR HTH; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 1902350..1903867 Hyphomicrobium denitrificans ATCC 51888 9387765 YP_003755995.1 CDS Hden_1871 NC_014313.1 1903886 1904599 R KEGG: mlo:mll6632 Fnr-type transcriptional regulator; PFAM: regulatory protein Crp; cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator complement(1903886..1904599) Hyphomicrobium denitrificans ATCC 51888 9387766 YP_003755996.1 CDS Hden_1872 NC_014313.1 1904803 1905582 D PFAM: periplasmic binding protein; KEGG: met:M446_4715 periplasmic binding protein; periplasmic binding protein 1904803..1905582 Hyphomicrobium denitrificans ATCC 51888 9387767 YP_003755997.1 CDS Hden_1873 NC_014313.1 1905596 1906417 D KEGG: azl:AZL_000720 hypothetical protein; hypothetical protein 1905596..1906417 Hyphomicrobium denitrificans ATCC 51888 9387768 YP_003755998.1 CDS Hden_1874 NC_014313.1 1906522 1907817 D PFAM: protein of unknown function DUF2130; KEGG: rpb:RPB_0215 hypothetical protein; hypothetical protein 1906522..1907817 Hyphomicrobium denitrificans ATCC 51888 9387769 YP_003755999.1 CDS Hden_1875 NC_014313.1 1908727 1909266 D KEGG: mno:Mnod_4915 formaldehyde-activating enzyme; TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); formaldehyde-activating enzyme 1908727..1909266 Hyphomicrobium denitrificans ATCC 51888 9387772 YP_003756000.1 CDS Hden_1876 NC_014313.1 1909514 1909717 D KEGG: bmr:BMI_I1417 hypothetical protein; hypothetical protein 1909514..1909717 Hyphomicrobium denitrificans ATCC 51888 9387773 YP_003756001.1 CDS Hden_1877 NC_014313.1 1909712 1910701 R PFAM: ApbE family lipoprotein; KEGG: bbt:BBta_6013 nitrous oxide reductase accessory protein NosX (required for nitrous oxide reduction), ApbE-like lipoprotein; ApbE family lipoprotein complement(1909712..1910701) Hyphomicrobium denitrificans ATCC 51888 9387774 YP_003756002.1 CDS Hden_1878 NC_014313.1 1910711 1911262 R PFAM: NosL family protein; KEGG: rpt:Rpal_2355 NosL family protein; NosL family protein complement(1910711..1911262) Hyphomicrobium denitrificans ATCC 51888 9387775 YP_003756003.1 CDS Hden_1879 NC_014313.1 1911259 1912089 R KEGG: bbt:BBta_6011 copper ABC transporter permease protein NosY; copper ABC transporter permease complement(1911259..1912089) Hyphomicrobium denitrificans ATCC 51888 9387776 YP_003756004.1 CDS Hden_1880 NC_014313.1 1912086 1913009 R KEGG: bbt:BBta_6010 copper ABC transporter ATP-binding protein NosF; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(1912086..1913009) Hyphomicrobium denitrificans ATCC 51888 9387777 YP_003756005.1 CDS Hden_1881 NC_014313.1 1913006 1914397 R KEGG: bja:blr0316 periplasmic copper-binding precursor; PFAM: periplasmic copper-binding; SMART: carbohydrate-binding and sugar hydrolysis; Parallel beta-helix repeat; periplasmic copper-binding protein complement(1913006..1914397) Hyphomicrobium denitrificans ATCC 51888 9387778 YP_003756006.1 CDS Hden_1882 NC_014313.1 1914410 1916335 R KEGG: oca:OCAR_5030 nitrous-oxide reductase; PFAM: cytochrome C oxidase subunit II; nitrous-oxide reductase complement(1914410..1916335) Hyphomicrobium denitrificans ATCC 51888 9387779 YP_003756007.1 CDS Hden_1883 NC_014313.1 1916377 1918647 R PFAM: FMN-binding domain protein; KEGG: met:M446_2862 FMN-binding domain-containing protein; nitrous oxide expression regulator, NosR complement(1916377..1918647) Hyphomicrobium denitrificans ATCC 51888 9387780 YP_003756008.1 CDS Hden_1884 NC_014313.1 1918761 1919621 D KEGG: bja:bll0313 hypothetical protein; hypothetical protein 1918761..1919621 Hyphomicrobium denitrificans ATCC 51888 9387781 YP_003756009.1 CDS Hden_1885 NC_014313.1 1919930 1920655 D KEGG: kfl:Kfla_4282 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 1919930..1920655 Hyphomicrobium denitrificans ATCC 51888 9387782 YP_003756010.1 CDS Hden_1886 NC_014313.1 1920686 1921369 R KEGG: swi:Swit_1007 short-chain dehydrogenase/reductase SDR; hypothetical protein complement(1920686..1921369) Hyphomicrobium denitrificans ATCC 51888 9387783 YP_003756011.1 CDS Hden_1887 NC_014313.1 1921615 1926057 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein; Pertactin; KEGG: xau:Xaut_2793 outer membrane autotransporter; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein complement(1921615..1926057) Hyphomicrobium denitrificans ATCC 51888 9387784 YP_003756012.1 CDS Hden_1888 NC_014313.1 1927014 1927256 R KEGG: pmy:Pmen_3932 hypothetical protein; hypothetical protein complement(1927014..1927256) Hyphomicrobium denitrificans ATCC 51888 9387785 YP_003756013.1 CDS Hden_1889 NC_014313.1 1927426 1927821 D PFAM: type IV pilus assembly PilZ; KEGG: drm:Dred_1474 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1927426..1927821 Hyphomicrobium denitrificans ATCC 51888 9387786 YP_003756014.1 CDS Hden_1890 NC_014313.1 1928036 1928944 D KEGG: bcs:BCAN_A0513 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 1928036..1928944 Hyphomicrobium denitrificans ATCC 51888 9387787 YP_003756015.1 CDS Hden_1891 NC_014313.1 1928784 1929839 R PFAM: protein of unknown function DUF1499; KEGG: rpd:RPD_1266 hypothetical protein; hypothetical protein complement(1928784..1929839) Hyphomicrobium denitrificans ATCC 51888 9387788 YP_003756016.1 CDS Hden_1892 NC_014313.1 1929951 1930601 R TIGRFAM: pyridoxamine 5'-phosphate oxidase; KEGG: azc:AZC_1197 pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxine 5'-phosphate oxidase dimerisation-like; pyridoxamine 5'-phosphate oxidase complement(1929951..1930601) Hyphomicrobium denitrificans ATCC 51888 9387789 YP_003756017.1 CDS Hden_1893 NC_014313.1 1930755 1931195 D KEGG: aha:AHA_3058 17 kDa antigen; hypothetical protein 1930755..1931195 Hyphomicrobium denitrificans ATCC 51888 9387790 YP_003756018.1 CDS Hden_1894 NC_014313.1 1931711 1931986 D KEGG: ddc:Dd586_0395 SinR-like protein; SinR-like protein 1931711..1931986 Hyphomicrobium denitrificans ATCC 51888 9387791 YP_003756019.1 CDS Hden_1895 NC_014313.1 1932056 1932250 D KEGG: vei:Veis_1811 regulatory proteins, IclR; regulatory protein 1932056..1932250 Hyphomicrobium denitrificans ATCC 51888 9387792 YP_003756020.1 CDS Hden_1896 NC_014313.1 1932681 1932812 D hypothetical protein 1932681..1932812 Hyphomicrobium denitrificans ATCC 51888 9387793 YP_003756021.1 CDS Hden_1897 NC_014313.1 1932812 1933045 D KEGG: pkn:PKH_142610 RNA-binding protein; RNA-binding protein 1932812..1933045 Hyphomicrobium denitrificans ATCC 51888 9387794 YP_003756022.1 CDS Hden_1898 NC_014313.1 1933047 1933922 R KEGG: mca:MCA0033 DNA-damage-inducible protein D; DNA-damage-inducible protein D complement(1933047..1933922) Hyphomicrobium denitrificans ATCC 51888 9387795 YP_003756023.1 CDS Hden_1901 NC_014313.1 1935561 1936280 D KEGG: ara:Arad_2240 LexA repressor; TIGRFAM: LexA repressor; PFAM: peptidase S24/S26A/S26B, conserved region; LexA DNA-binding domain protein; LexA family transcriptional repressor 1935561..1936280 Hyphomicrobium denitrificans ATCC 51888 9387798 YP_003756024.1 CDS Hden_1902 NC_014313.1 1936274 1938613 R KEGG: pla:Plav_3179 ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein complement(1936274..1938613) Hyphomicrobium denitrificans ATCC 51888 9387799 YP_003756025.1 CDS Hden_1903 NC_014313.1 1938725 1940269 D KEGG: bmr:BMI_I1158 glutamyl-tRNA synthetase; TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1938725..1940269 Hyphomicrobium denitrificans ATCC 51888 9387800 YP_003756026.1 CDS Hden_1904 NC_014313.1 1940468 1941793 D KEGG: sme:SMc02087 type II citrate synthase; TIGRFAM: citrate synthase I; PFAM: citrate synthase; citrate synthase I 1940468..1941793 Hyphomicrobium denitrificans ATCC 51888 9387801 YP_003756027.1 CDS Hden_1905 NC_014313.1 1941751 1942983 R TIGRFAM: lipid-A-disaccharide synthase; KEGG: met:M446_0645 lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(1941751..1942983) Hyphomicrobium denitrificans ATCC 51888 9387802 YP_003756028.1 CDS Hden_1906 NC_014313.1 1942976 1944253 R PFAM: protein of unknown function DUF1009; KEGG: bja:bll4848 hypothetical protein; hypothetical protein complement(1942976..1944253) Hyphomicrobium denitrificans ATCC 51888 9387803 YP_003756029.1 CDS Hden_1907 NC_014313.1 1944263 1945069 R TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: met:M446_0643 UDP-N-acetylglucosamine acyltransferase; PFAM: transferase hexapeptide repeat containing protein; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase complement(1944263..1945069) Hyphomicrobium denitrificans ATCC 51888 9387804 YP_003756030.1 CDS Hden_1908 NC_014313.1 1945062 1945565 R KEGG: smd:Smed_1140 (3R)-hydroxymyristoyl-ACP dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ complement(1945062..1945565) Hyphomicrobium denitrificans ATCC 51888 9387805 YP_003756031.1 CDS Hden_1909 NC_014313.1 1945622 1946683 R KEGG: met:M446_0641 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(1945622..1946683) Hyphomicrobium denitrificans ATCC 51888 9387806 YP_003756032.1 CDS Hden_1910 NC_014313.1 1946857 1949244 R KEGG: azc:AZC_1701 outer membrane protein precursor; TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; outer membrane protein assembly complex, YaeT protein complement(1946857..1949244) Hyphomicrobium denitrificans ATCC 51888 9387807 YP_003756033.1 CDS Hden_1911 NC_014313.1 1949544 1950689 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: rpt:Rpal_3261 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein; membrane-associated zinc metalloprotease complement(1949544..1950689) Hyphomicrobium denitrificans ATCC 51888 9387808 YP_003756034.1 CDS Hden_1912 NC_014313.1 1950758 1952008 R TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: swi:Swit_0466 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1950758..1952008) Hyphomicrobium denitrificans ATCC 51888 9387809 YP_003756035.1 CDS Hden_1913 NC_014313.1 1952008 1952883 R PFAM: phosphatidate cytidylyltransferase; KEGG: xau:Xaut_4434 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(1952008..1952883) Hyphomicrobium denitrificans ATCC 51888 9387810 YP_003756036.1 CDS Hden_1914 NC_014313.1 1952893 1953651 R TIGRFAM: undecaprenyl diphosphate synthase; KEGG: pla:Plav_3192 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(1952893..1953651) Hyphomicrobium denitrificans ATCC 51888 9387811 YP_003756037.1 CDS Hden_1915 NC_014313.1 1953732 1954295 R KEGG: pla:Plav_3193 ribosome recycling factor; TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; ribosome recycling factor complement(1953732..1954295) Hyphomicrobium denitrificans ATCC 51888 9387812 YP_003756038.1 CDS Hden_1916 NC_014313.1 1954379 1955113 R KEGG: pla:Plav_3194 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; uridylate kinase complement(1954379..1955113) Hyphomicrobium denitrificans ATCC 51888 9387813 YP_003756039.1 CDS Hden_1917 NC_014313.1 1955201 1956136 R KEGG: mno:Mnod_1697 translation elongation factor Ts; TIGRFAM: translation elongation factor Ts; PFAM: translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; translation elongation factor Ts complement(1955201..1956136) Hyphomicrobium denitrificans ATCC 51888 9387814 YP_003756040.1 CDS Hden_1918 NC_014313.1 1956217 1957206 R KEGG: rpc:RPC_2436 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; 30S ribosomal protein S2 complement(1956217..1957206) Hyphomicrobium denitrificans ATCC 51888 9387815 YP_003756041.1 CDS Hden_1919 NC_014313.1 1957596 1957961 R KEGG: acp:A2cp1_4222 hypothetical protein; hypothetical protein complement(1957596..1957961) Hyphomicrobium denitrificans ATCC 51888 9387816 YP_003756042.1 CDS Hden_1920 NC_014313.1 1958069 1958320 R KEGG: oan:Oant_4124 hypothetical protein; hypothetical protein complement(1958069..1958320) Hyphomicrobium denitrificans ATCC 51888 9387817 YP_003756043.1 CDS Hden_1921 NC_014313.1 1958470 1962012 R SMART: phosphoesterase PHP domain protein; TIGRFAM: DNA polymerase III, subunit alpha; KEGG: bbt:BBta_4522 DNA polymerase III subunit alpha; PFAM: DNA polymerase III subunit alpha; nucleic acid binding OB-fold tRNA/helicase-type; PHP domain protein; DNA polymerase III subunit alpha complement(1958470..1962012) Hyphomicrobium denitrificans ATCC 51888 9387818 YP_003756044.1 CDS Hden_1922 NC_014313.1 1962079 1962804 R KEGG: mch:Mchl_1194 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter complement(1962079..1962804) Hyphomicrobium denitrificans ATCC 51888 9387819 YP_003756045.1 CDS Hden_1923 NC_014313.1 1962810 1964081 R KEGG: nha:Nham_2196 LolC/E family lipoprotein releasing system, transmembrane protein; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; lipoprotein releasing system, transmembrane protein, LolC/E family complement(1962810..1964081) Hyphomicrobium denitrificans ATCC 51888 9387820 YP_003756046.1 CDS Hden_1924 NC_014313.1 1964185 1965717 R TIGRFAM: prolyl-tRNA synthetase; KEGG: sal:Sala_1230 prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); prolyl-tRNA synthetase, class II-like; anticodon-binding domain protein; prolyl-tRNA synthetase complement(1964185..1965717) Hyphomicrobium denitrificans ATCC 51888 9387821 YP_003756047.1 CDS Hden_1925 NC_014313.1 1965890 1966165 R PFAM: protein of unknown function DUF1467; KEGG: bid:Bind_1782 hypothetical protein; hypothetical protein complement(1965890..1966165) Hyphomicrobium denitrificans ATCC 51888 9387822 YP_003756048.1 CDS Hden_1926 NC_014313.1 1966208 1966612 R TIGRFAM: methylmalonyl-CoA epimerase; KEGG: mno:Mnod_4142 methylmalonyl-CoA epimerase; PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; methylmalonyl-CoA epimerase complement(1966208..1966612) Hyphomicrobium denitrificans ATCC 51888 9387823 YP_003756049.1 CDS Hden_1927 NC_014313.1 1966662 1968377 R KEGG: bbt:BBta_4546 metallo-beta-lactamase family hydrolase; PFAM: RNA-metabolising metallo-beta-lactamase; SMART: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase complement(1966662..1968377) Hyphomicrobium denitrificans ATCC 51888 9387824 YP_003756050.1 CDS Hden_1928 NC_014313.1 1968374 1969150 R KEGG: pla:Plav_3212 biotin--acetyl-CoA-carboxylase ligase; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; biotin/acetyl-CoA-carboxylase ligase complement(1968374..1969150) Hyphomicrobium denitrificans ATCC 51888 9387825 YP_003756051.1 CDS Hden_1929 NC_014313.1 1969155 1970615 R KEGG: mes:Meso_1035 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(1969155..1970615) Hyphomicrobium denitrificans ATCC 51888 9387826 YP_003756052.1 CDS Hden_1930 NC_014313.1 1970627 1972114 R KEGG: pla:Plav_3214 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(1970627..1972114) Hyphomicrobium denitrificans ATCC 51888 9387827 YP_003756053.1 CDS Hden_1931 NC_014313.1 1972111 1974069 R KEGG: azc:AZC_1679 NADH-plastoquinone oxidoreductase chain 5 protein; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/ubiquinone/plastoquinone (complex I); NADH-ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L complement(1972111..1974069) Hyphomicrobium denitrificans ATCC 51888 9387828 YP_003756054.1 CDS Hden_1932 NC_014313.1 1974156 1974464 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ret:RHE_CH01615 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L complement(1974156..1974464) Hyphomicrobium denitrificans ATCC 51888 9387829 YP_003756055.1 CDS Hden_1933 NC_014313.1 1974461 1975111 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: ret:RHE_CH01614 NADH dehydrogenase subunit J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(1974461..1975111) Hyphomicrobium denitrificans ATCC 51888 9387830 YP_003756056.1 CDS Hden_1934 NC_014313.1 1975150 1975638 R TIGRFAM: NADH-quinone oxidoreductase, chain I; KEGG: pla:Plav_3218 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; NADH-quinone oxidoreductase subunit I complement(1975150..1975638) Hyphomicrobium denitrificans ATCC 51888 9387831 YP_003756057.1 CDS Hden_1935 NC_014313.1 1975635 1976705 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: rle:RL1708 NADH dehydrogenase subunit H; respiratory-chain NADH dehydrogenase subunit 1 complement(1975635..1976705) Hyphomicrobium denitrificans ATCC 51888 9387832 YP_003756058.1 CDS Hden_1936 NC_014313.1 1976711 1978804 R KEGG: mlo:mll1362 NADH dehydrogenase subunit G; TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase; NADH-quinone oxidoreductase chain G ; ferredoxin; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; NADH-quinone oxidoreductase subunit G complement(1976711..1978804) Hyphomicrobium denitrificans ATCC 51888 9387833 YP_003756059.1 CDS Hden_1937 NC_014313.1 1978823 1980109 R TIGRFAM: NADH-quinone oxidoreductase, F subunit; KEGG: bbt:BBta_4556 NADH dehydrogenase I subunit F; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; NADH-quinone oxidoreductase subunit F complement(1978823..1980109) Hyphomicrobium denitrificans ATCC 51888 9387834 YP_003756060.1 CDS Hden_1938 NC_014313.1 1980115 1981281 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; KEGG: sil:SPO2780 NADH dehydrogenase subunit E; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; NADH-quinone oxidoreductase subunit E complement(1980115..1981281) Hyphomicrobium denitrificans ATCC 51888 9387835 YP_003756061.1 CDS Hden_1939 NC_014313.1 1981533 1982015 R KEGG: vap:Vapar_5757 protein of unknown function DUF6 transmembrane; hypothetical protein complement(1981533..1982015) Hyphomicrobium denitrificans ATCC 51888 9387836 YP_003756062.1 CDS Hden_1940 NC_014313.1 1982246 1983436 R TIGRFAM: NADH dehydrogenase I, D subunit; KEGG: nwi:Nwi_1885 NADH dehydrogenase subunit D; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I subunit D complement(1982246..1983436) Hyphomicrobium denitrificans ATCC 51888 9387837 YP_003756063.1 CDS Hden_1941 NC_014313.1 1983439 1983888 R PFAM: thioesterase superfamily protein; KEGG: oca:OCAR_5925 hypothetical protein; thioesterase superfamily protein complement(1983439..1983888) Hyphomicrobium denitrificans ATCC 51888 9387838 YP_003756064.1 CDS Hden_1942 NC_014313.1 1983900 1984199 R KEGG: fal:FRAAL6779 hypothetical protein; hypothetical protein complement(1983900..1984199) Hyphomicrobium denitrificans ATCC 51888 9387839 YP_003756065.1 CDS Hden_1943 NC_014313.1 1984256 1984855 R KEGG: mno:Mnod_4128 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C complement(1984256..1984855) Hyphomicrobium denitrificans ATCC 51888 9387840 YP_003756066.1 CDS Hden_1944 NC_014313.1 1984871 1985290 R KEGG: lpf:lpl1942 hypothetical protein; hypothetical protein complement(1984871..1985290) Hyphomicrobium denitrificans ATCC 51888 9387841 YP_003756067.1 CDS Hden_1945 NC_014313.1 1985312 1985908 R TIGRFAM: NADH-quinone oxidoreductase subunit beta; KEGG: azc:AZC_1668 NADH ubiqionone oxidoreductase chain B protein; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit beta complement(1985312..1985908) Hyphomicrobium denitrificans ATCC 51888 9387842 YP_003756068.1 CDS Hden_1946 NC_014313.1 1985899 1986264 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: mes:Meso_1022 NADH dehydrogenase subunit A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 complement(1985899..1986264) Hyphomicrobium denitrificans ATCC 51888 9387843 YP_003756069.1 CDS Hden_1947 NC_014313.1 1986720 1986983 R KEGG: ang:An06g01080 hypothetical protein; hypothetical protein complement(1986720..1986983) Hyphomicrobium denitrificans ATCC 51888 9387844 YP_003756070.1 CDS Hden_1948 NC_014313.1 1987316 1987576 R KEGG: gdj:Gdia_2028 hypothetical protein; hypothetical protein complement(1987316..1987576) Hyphomicrobium denitrificans ATCC 51888 9387845 YP_003756071.1 CDS Hden_1949 NC_014313.1 1987750 1988115 R KEGG: nhl:Nhal_1707 hypothetical protein; hypothetical protein complement(1987750..1988115) Hyphomicrobium denitrificans ATCC 51888 9387846 YP_003756072.1 CDS Hden_1950 NC_014313.1 1988414 1990588 D KEGG: xau:Xaut_1894 CHASE2 sensor protein; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase with Chase sensor 1988414..1990588 Hyphomicrobium denitrificans ATCC 51888 9387847 YP_003756073.1 CDS Hden_1951 NC_014313.1 1990628 1991641 R PFAM: FecR protein; KEGG: mpo:Mpop_1557 hypothetical protein; FecR protein complement(1990628..1991641) Hyphomicrobium denitrificans ATCC 51888 9387848 YP_003756074.1 CDS Hden_1952 NC_014313.1 1992126 1994003 D TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: bbt:BBta_4485 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase 1992126..1994003 Hyphomicrobium denitrificans ATCC 51888 9387849 YP_003756075.1 CDS Hden_1953 NC_014313.1 1994319 1994822 R PFAM: Domain of unknown function DUF1993; KEGG: pap:PSPA7_0055 hypothetical protein; hypothetical protein complement(1994319..1994822) Hyphomicrobium denitrificans ATCC 51888 9387851 YP_003756076.1 CDS Hden_1954 NC_014313.1 1995228 1995626 D KEGG: bbt:BBta_5411 hypothetical protein; hypothetical protein 1995228..1995626 Hyphomicrobium denitrificans ATCC 51888 9387853 YP_003756077.1 CDS Hden_1955 NC_014313.1 1995725 1995997 R KEGG: ftm:FTM_0702 DNA-binding protein HU-beta; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(1995725..1995997) Hyphomicrobium denitrificans ATCC 51888 9387854 YP_003756078.1 CDS Hden_1956 NC_014313.1 1996242 1998668 R SMART: peptidase S16; AAA ATPase; TIGRFAM: ATP-dependent protease La; KEGG: bid:Bind_2182 ATP-dependent protease La; PFAM: peptidase S16; ATPase AAA central domain protein; ATP-dependent protease La complement(1996242..1998668) Hyphomicrobium denitrificans ATCC 51888 9387855 YP_003756079.1 CDS Hden_1957 NC_014313.1 1998941 2000188 R TIGRFAM: ATP-dependent Clp protease ATP-binding subunit ClpX; PFAM: ATPase AAA; Clp ATPase-like; zinc finger C4 domain protein; KEGG: pla:Plav_3231 ATP-dependent protease ATP-binding subunit ClpX; SMART: ATPase AAA; ATP-dependent Clp protease ATP-binding subunit ClpX complement(1998941..2000188) Hyphomicrobium denitrificans ATCC 51888 9387856 YP_003756080.1 CDS Hden_1958 NC_014313.1 2000523 2001176 R KEGG: mes:Meso_1169 ATP-dependent Clp protease proteolytic subunit; PFAM: peptidase S14 ClpP; endopeptidase Clp complement(2000523..2001176) Hyphomicrobium denitrificans ATCC 51888 9387857 YP_003756081.1 CDS Hden_1959 NC_014313.1 2001305 2002669 R KEGG: pla:Plav_3235 trigger factor; TIGRFAM: trigger factor; PFAM: trigger factor domain protein; trigger factor domain; peptidylprolyl isomerase FKBP-type; trigger factor complement(2001305..2002669) Hyphomicrobium denitrificans ATCC 51888 9387858 YP_003756082.1 CDS Hden_1960 NC_014313.1 2003552 2004415 D KEGG: rhodanese; PFAM: Rhodanese domain protein; SMART: rhodanese; rhodanese 2003552..2004415 Hyphomicrobium denitrificans ATCC 51888 9387860 YP_003756083.1 CDS Hden_1961 NC_014313.1 2004444 2005037 R PFAM: glutathione peroxidase; KEGG: azl:AZL_027970 glutathione peroxidase; glutathione peroxidase complement(2004444..2005037) Hyphomicrobium denitrificans ATCC 51888 9387861 YP_003756084.1 CDS Hden_1962 NC_014313.1 2005254 2005517 D KEGG: ptm:GSPATT00026891001 hypothetical protein; hypothetical protein 2005254..2005517 Hyphomicrobium denitrificans ATCC 51888 9387862 YP_003756085.1 CDS Hden_1963 NC_014313.1 2005702 2006784 D PFAM: secretion protein HlyD; KEGG: bbt:BBta_7064 hypothetical protein; secretion protein HlyD 2005702..2006784 Hyphomicrobium denitrificans ATCC 51888 9387863 YP_003756086.1 CDS Hden_1964 NC_014313.1 2007071 2007289 D KEGG: rsq:Rsph17025_0175 hypothetical protein; hypothetical protein 2007071..2007289 Hyphomicrobium denitrificans ATCC 51888 9387864 YP_003756087.1 CDS Hden_1965 NC_014313.1 2007312 2007734 D KEGG: pen:PSEEN2415 error-prone DNA polymerase; hypothetical protein 2007312..2007734 Hyphomicrobium denitrificans ATCC 51888 9387865 YP_003756088.1 CDS Hden_1966 NC_014313.1 2007820 2008674 D PFAM: alpha/beta hydrolase fold; KEGG: azc:AZC_1648 esterase; alpha/beta hydrolase fold protein 2007820..2008674 Hyphomicrobium denitrificans ATCC 51888 9387866 YP_003756089.1 CDS Hden_1967 NC_014313.1 2008839 2009408 D KEGG: cin:100181106 hypothetical protein LOC100181106; hypothetical protein 2008839..2009408 Hyphomicrobium denitrificans ATCC 51888 9387867 YP_003756090.1 CDS Hden_1968 NC_014313.1 2009524 2010720 D KEGG: bra:BRADO0993 ABC transporter permease protein; manually curated; PFAM: protein of unknown function DUF214; hypothetical protein 2009524..2010720 Hyphomicrobium denitrificans ATCC 51888 9387868 YP_003756091.1 CDS Hden_1969 NC_014313.1 2010736 2011476 D KEGG: met:M446_1554 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 2010736..2011476 Hyphomicrobium denitrificans ATCC 51888 9387869 YP_003756092.1 CDS Hden_1970 NC_014313.1 2011650 2012501 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pla:Plav_0786 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2011650..2012501 Hyphomicrobium denitrificans ATCC 51888 9387870 YP_003756093.1 CDS Hden_1971 NC_014313.1 2012498 2013112 D PFAM: phosphoglycerate mutase; KEGG: rhi:NGR_c05180 phosphoglycerate mutase; phosphoglycerate mutase 2012498..2013112 Hyphomicrobium denitrificans ATCC 51888 9387871 YP_003756094.1 CDS Hden_1972 NC_014313.1 2013588 2014676 D TIGRFAM: chorismate synthase; KEGG: rpd:RPD_1314 chorismate synthase; PFAM: chorismate synthase; chorismate synthase 2013588..2014676 Hyphomicrobium denitrificans ATCC 51888 9387872 YP_003756095.1 CDS Hden_1973 NC_014313.1 2014868 2015179 D KEGG: lbz:LbrM17_V2.0710 hypothetical protein; hypothetical protein 2014868..2015179 Hyphomicrobium denitrificans ATCC 51888 9387873 YP_003756096.1 CDS Hden_1974 NC_014313.1 2015045 2016274 R PFAM: (uracil-5)-methyltransferase; KEGG: hne:HNE_2781 23S rRNA (uracil-5-)-methyltransferase RumA; (uracil-5)-methyltransferase complement(2015045..2016274) Hyphomicrobium denitrificans ATCC 51888 9387874 YP_003756097.1 CDS Hden_1975 NC_014313.1 2016267 2017046 R SMART: RNA-binding S4 domain protein; manually curated; TIGRFAM: hemolysin A; KEGG: rru:Rru_A2620 hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A complement(2016267..2017046) Hyphomicrobium denitrificans ATCC 51888 9387875 YP_003756098.1 CDS Hden_1976 NC_014313.1 2017077 2017499 D KEGG: bra:BRADO0884 signal peptide; hypothetical protein 2017077..2017499 Hyphomicrobium denitrificans ATCC 51888 9387876 YP_003756099.1 CDS Hden_1977 NC_014313.1 2017566 2019473 R KEGG: pla:Plav_0781 1-deoxy-D-xylulose-5-phosphate synthase; TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: transketolase central region; transketolase; deoxyxylulose-5-phosphate synthase complement(2017566..2019473) Hyphomicrobium denitrificans ATCC 51888 9387877 YP_003756100.1 CDS Hden_1978 NC_014313.1 2019667 2019948 R KEGG: bqu:BQ03530 exodeoxyribonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII small subunit; PFAM: exonuclease VII small subunit; exodeoxyribonuclease VII small subunit complement(2019667..2019948) Hyphomicrobium denitrificans ATCC 51888 9387878 YP_003756101.1 CDS Hden_1979 NC_014313.1 2019995 2020939 R PFAM: histone deacetylase superfamily; KEGG: msl:Msil_1308 histone deacetylase superfamily; histone deacetylase superfamily protein complement(2019995..2020939) Hyphomicrobium denitrificans ATCC 51888 9387879 YP_003756102.1 CDS Hden_1980 NC_014313.1 2020978 2021859 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: oca:OCAR_4340 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2020978..2021859) Hyphomicrobium denitrificans ATCC 51888 9387880 YP_003756103.1 CDS Hden_1981 NC_014313.1 2021931 2022704 R PFAM: enoyl-CoA hydratase/isomerase; KEGG: bja:bll7955 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(2021931..2022704) Hyphomicrobium denitrificans ATCC 51888 9387881 YP_003756104.1 CDS Hden_1982 NC_014313.1 2022701 2024470 R PFAM: acyl-CoA dehydrogenase domain protein; KEGG: oca:OCAR_6891 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein complement(2022701..2024470) Hyphomicrobium denitrificans ATCC 51888 9387882 YP_003756105.1 CDS Hden_1983 NC_014313.1 2024564 2025511 D KEGG: mrd:Mrad2831_3830 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; Sua5/YciO/YrdC/YwlC family protein 2024564..2025511 Hyphomicrobium denitrificans ATCC 51888 9387883 YP_003756106.1 CDS Hden_1984 NC_014313.1 2025525 2025704 R KEGG: afv:AFLA_139530 hypothetical protein; hypothetical protein complement(2025525..2025704) Hyphomicrobium denitrificans ATCC 51888 9387884 YP_003756107.1 CDS Hden_1985 NC_014313.1 2025822 2026937 R PFAM: acyltransferase 3; KEGG: mrd:Mrad2831_0502 acyltransferase 3; acyltransferase 3 complement(2025822..2026937) Hyphomicrobium denitrificans ATCC 51888 9387885 YP_003756108.1 CDS Hden_1986 NC_014313.1 2027068 2028780 R PFAM: Clp domain protein; KEGG: hsl:OE3611R transducer protein BasT; Clp domain-containing protein complement(2027068..2028780) Hyphomicrobium denitrificans ATCC 51888 9387886 YP_003756109.1 CDS Hden_1987 NC_014313.1 2028995 2029675 R PFAM: protein of unknown function DUF159; KEGG: rhi:NGR_c08610 hypothetical protein; hypothetical protein complement(2028995..2029675) Hyphomicrobium denitrificans ATCC 51888 9387887 YP_003756110.1 CDS Hden_1988 NC_014313.1 2029715 2030179 D PFAM: conserved hypothetical protein; KEGG: rpb:RPB_1127 hypothetical protein; hypothetical protein 2029715..2030179 Hyphomicrobium denitrificans ATCC 51888 9387888 YP_003756111.1 CDS Hden_1989 NC_014313.1 2030331 2030576 D KEGG: pla:Plav_0756 hypothetical protein; hypothetical protein 2030331..2030576 Hyphomicrobium denitrificans ATCC 51888 9387889 YP_003756112.1 CDS Hden_1990 NC_014313.1 2030604 2031266 R PFAM: lysine exporter (LYSE/YGGA); KEGG: pla:Plav_0754 lysine exporter protein LysE/YggA; lysine exporter LysE/YggA complement(2030604..2031266) Hyphomicrobium denitrificans ATCC 51888 9387890 YP_003756113.1 CDS Hden_1991 NC_014313.1 2031343 2031984 D KEGG: smd:Smed_0707 hypothetical protein; hypothetical protein 2031343..2031984 Hyphomicrobium denitrificans ATCC 51888 9387891 YP_003756114.1 CDS Hden_1992 NC_014313.1 2032110 2032877 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr7232 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2032110..2032877 Hyphomicrobium denitrificans ATCC 51888 9387892 YP_003756115.1 CDS Hden_1993 NC_014313.1 2032901 2034235 R TIGRFAM: dihydroorotase, multifunctional complex type; KEGG: rpb:RPB_1118 dihydroorotase; PFAM: amidohydrolase; dihydroorotase complement(2032901..2034235) Hyphomicrobium denitrificans ATCC 51888 9387893 YP_003756116.1 CDS Hden_1994 NC_014313.1 2034320 2035216 D KEGG: mrd:Mrad2831_3987 folate-binding protein YgfZ; TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; folate-binding protein YgfZ 2034320..2035216 Hyphomicrobium denitrificans ATCC 51888 9387894 YP_003756117.1 CDS Hden_1995 NC_014313.1 2035213 2035824 D TIGRFAM: DNA-3-methyladenine glycosylase I; KEGG: rpc:RPC_4332 DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I 2035213..2035824 Hyphomicrobium denitrificans ATCC 51888 9387895 YP_003756118.1 CDS Hden_1996 NC_014313.1 2035821 2036429 D KEGG: rpd:RPD_1235 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 2035821..2036429 Hyphomicrobium denitrificans ATCC 51888 9387896 YP_003756119.1 CDS Hden_1997 NC_014313.1 2036538 2037593 D KEGG: rpb:RPB_1112 hypothetical protein; hypothetical protein 2036538..2037593 Hyphomicrobium denitrificans ATCC 51888 9387897 YP_003756120.1 CDS Hden_1998 NC_014313.1 2037797 2038858 D TIGRFAM: quinolinate synthetase complex, subunit alpha; KEGG: rpb:RPB_1107 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit alpha 2037797..2038858 Hyphomicrobium denitrificans ATCC 51888 9387898 YP_003756121.1 CDS Hden_1999 NC_014313.1 2038892 2040544 D KEGG: rpb:RPB_1106 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; L-aspartate oxidase 2038892..2040544 Hyphomicrobium denitrificans ATCC 51888 9387899 YP_003756122.1 CDS Hden_2000 NC_014313.1 2040541 2041434 D TIGRFAM: nicotinate-nucleotide pyrophosphorylase; KEGG: oan:Oant_0431 nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2040541..2041434 Hyphomicrobium denitrificans ATCC 51888 9387900 YP_003756123.1 CDS Hden_2001 NC_014313.1 2041522 2041749 D KEGG: afv:AFLA_054150 cycloheximide resistance protein; hypothetical protein 2041522..2041749 Hyphomicrobium denitrificans ATCC 51888 9387901 YP_003756124.1 CDS Hden_2002 NC_014313.1 2041772 2044498 R TIGRFAM: pyruvate, phosphate dikinase; KEGG: xau:Xaut_0494 pyruvate phosphate dikinase; PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilizing protein; PEP-utilising protein mobile region; pyruvate, phosphate dikinase complement(2041772..2044498) Hyphomicrobium denitrificans ATCC 51888 9387902 YP_003756125.1 CDS Hden_2003 NC_014313.1 2044624 2046027 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: atc:AGR_C_165 hypothetical protein; peptidase M20 2044624..2046027 Hyphomicrobium denitrificans ATCC 51888 9387903 YP_003756126.1 CDS Hden_2004 NC_014313.1 2046080 2047036 D PFAM: ribonuclease T2; KEGG: xau:Xaut_2731 ribonuclease T2; ribonuclease T2 2046080..2047036 Hyphomicrobium denitrificans ATCC 51888 9387904 YP_003756127.1 CDS Hden_2005 NC_014313.1 2047096 2047851 R KEGG: scb:SCAB_4621 hypothetical protein; hypothetical protein complement(2047096..2047851) Hyphomicrobium denitrificans ATCC 51888 9387905 YP_003756128.1 CDS Hden_2006 NC_014313.1 2048001 2048741 R KEGG: cak:Caul_3758 hypothetical protein; hypothetical protein complement(2048001..2048741) Hyphomicrobium denitrificans ATCC 51888 9387906 YP_003756129.1 CDS Hden_2007 NC_014313.1 2049103 2049843 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mes:Meso_1974 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2049103..2049843 Hyphomicrobium denitrificans ATCC 51888 9387907 YP_003756130.1 CDS Hden_2008 NC_014313.1 2050120 2051418 D manually curated; KEGG: amt:Amet_1486 cell wall hydrolase/autolysin; hypothetical protein 2050120..2051418 Hyphomicrobium denitrificans ATCC 51888 9387908 YP_003756131.1 CDS Hden_2009 NC_014313.1 2051449 2052225 D KEGG: tde:TDE0488 lipoprotein; hypothetical protein 2051449..2052225 Hyphomicrobium denitrificans ATCC 51888 9387909 YP_003756132.1 CDS Hden_2010 NC_014313.1 2052395 2053366 R KEGG: bra:BRADO5334 hypothetical protein; hypothetical protein complement(2052395..2053366) Hyphomicrobium denitrificans ATCC 51888 9387910 YP_003756133.1 CDS Hden_2011 NC_014313.1 2053513 2055525 D TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; UvrB/UvrC protein; KEGG: mes:Meso_1975 excinuclease ABC subunit C; SMART: excinuclease ABC C subunit domain protein; DNA-binding protein; excinuclease ABC subunit C 2053513..2055525 Hyphomicrobium denitrificans ATCC 51888 9387911 YP_003756134.1 CDS Hden_2012 NC_014313.1 2055647 2058319 D PFAM: MscS Mechanosensitive ion channel; KEGG: smd:Smed_1800 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS 2055647..2058319 Hyphomicrobium denitrificans ATCC 51888 9387912 YP_003756135.1 CDS Hden_2013 NC_014313.1 2058387 2058974 D KEGG: mno:Mnod_3714 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 2058387..2058974 Hyphomicrobium denitrificans ATCC 51888 9387913 YP_003756136.1 CDS Hden_2014 NC_014313.1 2058981 2059256 D KEGG: mrd:Mrad2831_5403 molybdopterin converting factor, subunit 1; TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 2058981..2059256 Hyphomicrobium denitrificans ATCC 51888 9387914 YP_003756137.1 CDS Hden_2015 NC_014313.1 2059262 2059726 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: dar:Daro_2729 molybdopterin synthase subunit MoaE; molybdopterin biosynthesis MoaE protein 2059262..2059726 Hyphomicrobium denitrificans ATCC 51888 9387915 YP_003756138.1 CDS Hden_2016 NC_014313.1 2059933 2061204 D KEGG: rpc:RPC_2853 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 2059933..2061204 Hyphomicrobium denitrificans ATCC 51888 9387916 YP_003756139.1 CDS Hden_2017 NC_014313.1 2061891 2062868 R PFAM: diacylglycerol kinase; KEGG: pla:Plav_1994 diacylglycerol kinase; diacylglycerol kinase complement(2061891..2062868) Hyphomicrobium denitrificans ATCC 51888 9387917 YP_003756140.1 CDS Hden_2018 NC_014313.1 2062944 2063834 R KEGG: xau:Xaut_1986 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; RNA polymerase, sigma 32 subunit, RpoH complement(2062944..2063834) Hyphomicrobium denitrificans ATCC 51888 9387918 YP_003756141.1 CDS Hden_2019 NC_014313.1 2064023 2065057 R KEGG: oca:OCAR_7148 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase; PFAM: pseudouridine synthase; pseudouridine synthase complement(2064023..2065057) Hyphomicrobium denitrificans ATCC 51888 9387919 YP_003756142.1 CDS Hden_2020 NC_014313.1 2065094 2065468 D KEGG: gbe:GbCGDNIH1_0850 hypothetical protein; hypothetical protein 2065094..2065468 Hyphomicrobium denitrificans ATCC 51888 9387920 YP_003756143.1 CDS Hden_2021 NC_014313.1 2066153 2066557 R KEGG: sun:SUN_2376 hypothetical protein; hypothetical protein complement(2066153..2066557) Hyphomicrobium denitrificans ATCC 51888 9387922 YP_003756144.1 CDS Hden_2022 NC_014313.1 2066961 2067746 D KEGG: pfl:PFL_2850 hypothetical protein; periplasmic protein-like protein 2066961..2067746 Hyphomicrobium denitrificans ATCC 51888 9387923 YP_003756145.1 CDS Hden_2023 NC_014313.1 2067774 2068601 R PFAM: protein of unknown function DUF344; KEGG: gur:Gura_2647 hypothetical protein; hypothetical protein complement(2067774..2068601) Hyphomicrobium denitrificans ATCC 51888 9387924 YP_003756146.1 CDS Hden_2024 NC_014313.1 2068751 2069812 R KEGG: sus:acid_4937 calcium/cation antiporter; TIGRFAM: calcium/proton antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; calcium/proton antiporter, CaCA family complement(2068751..2069812) Hyphomicrobium denitrificans ATCC 51888 9387925 YP_003756147.1 CDS Hden_2025 NC_014313.1 2069828 2071624 R manually curated; TIGRFAM: sulfate transporter; KEGG: bja:blr2848 sulfate transporter; PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; sulfate transporter complement(2069828..2071624) Hyphomicrobium denitrificans ATCC 51888 9387926 YP_003756148.1 CDS Hden_2026 NC_014313.1 2072082 2074331 D KEGG: bid:Bind_2452 hypothetical protein; hypothetical protein 2072082..2074331 Hyphomicrobium denitrificans ATCC 51888 9387927 YP_003756149.1 CDS Hden_2027 NC_014313.1 2074373 2074801 D KEGG: azl:AZL_b02390 hypothetical protein; hypothetical protein 2074373..2074801 Hyphomicrobium denitrificans ATCC 51888 9387928 YP_003756150.1 CDS Hden_2028 NC_014313.1 2074823 2075782 D KEGG: rhi:NGR_b13630 phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 2074823..2075782 Hyphomicrobium denitrificans ATCC 51888 9387929 YP_003756151.1 CDS Hden_2029 NC_014313.1 2075786 2076994 D KEGG: bja:blr3458 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase 2075786..2076994 Hyphomicrobium denitrificans ATCC 51888 9387930 YP_003756152.1 CDS Hden_2030 NC_014313.1 2076991 2077773 D KEGG: bpa:BPP1167 enoyl-(acyl carrier protein) reductase; enoyl-(acyl carrier protein) reductase 2076991..2077773 Hyphomicrobium denitrificans ATCC 51888 9387931 YP_003756153.1 CDS Hden_2031 NC_014313.1 2077955 2078374 D PFAM: UspA domain protein; KEGG: rxy:Rxyl_2521 hypothetical protein; UspA domain-containing protein 2077955..2078374 Hyphomicrobium denitrificans ATCC 51888 9387932 YP_003756154.1 CDS Hden_2032 NC_014313.1 2078503 2081652 R KEGG: bja:bll5080 AcrB/AcrD/AcrF family protein; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(2078503..2081652) Hyphomicrobium denitrificans ATCC 51888 9387933 YP_003756155.1 CDS Hden_2033 NC_014313.1 2081657 2082769 R KEGG: bja:bll5081 multidrug resistance protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2081657..2082769) Hyphomicrobium denitrificans ATCC 51888 9387934 YP_003756156.1 CDS Hden_2034 NC_014313.1 2083405 2084469 D PFAM: protein of unknown function UPF0118; KEGG: nha:Nham_0862 hypothetical protein; hypothetical protein 2083405..2084469 Hyphomicrobium denitrificans ATCC 51888 9387935 YP_003756157.1 CDS Hden_2035 NC_014313.1 2084943 2086340 D KEGG: sco:SCO5294 secreted protein; hypothetical protein 2084943..2086340 Hyphomicrobium denitrificans ATCC 51888 9387936 YP_003756158.1 CDS Hden_2036 NC_014313.1 2086340 2087083 D KEGG: amt:Amet_0213 hypothetical protein; hypothetical protein 2086340..2087083 Hyphomicrobium denitrificans ATCC 51888 9387937 YP_003756159.1 CDS Hden_2037 NC_014313.1 2087152 2088201 R KEGG: xau:Xaut_0924 response regulator receiver protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator complement(2087152..2088201) Hyphomicrobium denitrificans ATCC 51888 9387938 YP_003756160.1 CDS Hden_2038 NC_014313.1 2088392 2089474 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mei:Msip34_2461 hypothetical protein; hypothetical protein 2088392..2089474 Hyphomicrobium denitrificans ATCC 51888 9387939 YP_003756161.1 CDS Hden_2039 NC_014313.1 2089471 2089767 D KEGG: mei:Msip34_2462 hypothetical protein; hypothetical protein 2089471..2089767 Hyphomicrobium denitrificans ATCC 51888 9387940 YP_003756162.1 CDS Hden_2040 NC_014313.1 2089764 2089880 D KEGG: mei:Msip34_2463 hypothetical protein; hypothetical protein 2089764..2089880 Hyphomicrobium denitrificans ATCC 51888 9387941 YP_003756163.1 CDS Hden_2041 NC_014313.1 2090004 2090378 D PFAM: PRC-barrel domain protein; KEGG: mrd:Mrad2831_4630 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein 2090004..2090378 Hyphomicrobium denitrificans ATCC 51888 9387942 YP_003756164.1 CDS Hden_2042 NC_014313.1 2090474 2091166 R KEGG: mmr:Mmar10_1158 hypothetical protein; hypothetical protein complement(2090474..2091166) Hyphomicrobium denitrificans ATCC 51888 9387943 YP_003756165.1 CDS Hden_2043 NC_014313.1 2091159 2091344 R KEGG: rpd:RPD_0737 cytochrome oxidase maturation protein, cbb3-type; TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; cytochrome oxidase maturation protein, cbb3-type complement(2091159..2091344) Hyphomicrobium denitrificans ATCC 51888 9387944 YP_003756166.1 CDS Hden_2044 NC_014313.1 2091341 2093536 R KEGG: pla:Plav_1526 heavy metal translocating P-type ATPase; TIGRFAM: ATPase P; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; ATPase P complement(2091341..2093536) Hyphomicrobium denitrificans ATCC 51888 9387945 YP_003756167.1 CDS Hden_2045 NC_014313.1 2093521 2094012 R PFAM: FixH family protein; KEGG: FixH family protein; FixH family protein complement(2093521..2094012) Hyphomicrobium denitrificans ATCC 51888 9387946 YP_003756168.1 CDS Hden_2046 NC_014313.1 2094009 2095493 R KEGG: pla:Plav_1528 cytochrome C oxidase cbb3 type accessory protein FixG; TIGRFAM: cytochrome C oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; cytochrome C oxidase accessory protein CcoG complement(2094009..2095493) Hyphomicrobium denitrificans ATCC 51888 9387947 YP_003756169.1 CDS Hden_2047 NC_014313.1 2095490 2096410 R KEGG: rpb:RPB_0014 cytochrome C oxidase cbb3-type, subunit III; TIGRFAM: cytochrome C oxidase cbb3-type, subunit III; PFAM: cytochrome C class I; cytochrome C oxidase cbb3-type subunit III complement(2095490..2096410) Hyphomicrobium denitrificans ATCC 51888 9387948 YP_003756170.1 CDS Hden_2048 NC_014313.1 2096407 2096583 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: hne:HNE_1230 cytochrome C oxidase cbb3-type, CcoQ subunit; Cbb3-type cytochrome oxidase component complement(2096407..2096583) Hyphomicrobium denitrificans ATCC 51888 9387949 YP_003756171.1 CDS Hden_2049 NC_014313.1 2096597 2097334 R KEGG: rpb:RPB_0016 cytochrome C oxidase cbb3-type, subunit II; TIGRFAM: cytochrome C oxidase cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome C oxidase cbb3-type subunit II complement(2096597..2097334) Hyphomicrobium denitrificans ATCC 51888 9387950 YP_003756172.1 CDS Hden_2050 NC_014313.1 2097347 2099011 R TIGRFAM: cytochrome C oxidase cbb3-type, subunit I; KEGG: pla:Plav_1532 cytochrome C oxidase cbb3-type, subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase cbb3-type subunit I complement(2097347..2099011) Hyphomicrobium denitrificans ATCC 51888 9387951 YP_003756173.1 CDS Hden_2051 NC_014313.1 2099258 2100031 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0050 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR complement(2099258..2100031) Hyphomicrobium denitrificans ATCC 51888 9387952 YP_003756174.1 CDS Hden_2052 NC_014313.1 2100031 2101218 R KEGG: azc:AZC_2421 acetate kinase; TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase complement(2100031..2101218) Hyphomicrobium denitrificans ATCC 51888 9387953 YP_003756175.1 CDS Hden_2053 NC_014313.1 2101215 2102621 R KEGG: azc:AZC_2420 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; PFAM: MaoC domain protein dehydratase; phosphate acetyl/butaryl transferase; phosphate acetyltransferase complement(2101215..2102621) Hyphomicrobium denitrificans ATCC 51888 9387954 YP_003756176.1 CDS Hden_2054 NC_014313.1 2102618 2104390 R PFAM: poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold; KEGG: bxe:Bxe_C0053 poly-beta-hydroxybutyrate polymerase; poly-beta-hydroxybutyrate polymerase domain-containing protein complement(2102618..2104390) Hyphomicrobium denitrificans ATCC 51888 9387955 YP_003756177.1 CDS Hden_2055 NC_014313.1 2104755 2107115 R TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; KEGG: nwi:Nwi_2890 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Cobalamin-independent synthase MetE domain protein; methionine synthase vitamin-B12 independent; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(2104755..2107115) Hyphomicrobium denitrificans ATCC 51888 9387956 YP_003756178.1 CDS Hden_2056 NC_014313.1 2107148 2107534 R PFAM: thioesterase superfamily protein; KEGG: rpt:Rpal_2645 thioesterase superfamily protein; thioesterase superfamily protein complement(2107148..2107534) Hyphomicrobium denitrificans ATCC 51888 9387957 YP_003756179.1 CDS Hden_2057 NC_014313.1 2107538 2107759 R KEGG: bid:Bind_0045 hypothetical protein; hypothetical protein complement(2107538..2107759) Hyphomicrobium denitrificans ATCC 51888 9387958 YP_003756180.1 CDS Hden_2058 NC_014313.1 2107807 2109111 R KEGG: bcs:BCAN_A1651 isocitrate lyase; TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase complement(2107807..2109111) Hyphomicrobium denitrificans ATCC 51888 9387959 YP_003756181.1 CDS Hden_2059 NC_014313.1 2109244 2110662 D KEGG: rru:Rru_A2316 XRE family transcriptional regulator; PFAM: protein of unknown function DUF2083,transcriptional regulator; protein of unknown function DUF955; hypothetical protein; SMART: hypothetical protein; XRE family transcriptional regulator 2109244..2110662 Hyphomicrobium denitrificans ATCC 51888 9387960 YP_003756182.1 CDS Hden_2060 NC_014313.1 2110680 2110796 D hypothetical protein 2110680..2110796 Hyphomicrobium denitrificans ATCC 51888 9387961 YP_003756183.1 CDS Hden_2061 NC_014313.1 2110871 2111464 R PFAM: protein of unknown function DUF955; KEGG: rsp:RSP_4244 hypothetical protein; hypothetical protein complement(2110871..2111464) Hyphomicrobium denitrificans ATCC 51888 9387962 YP_003756184.1 CDS Hden_2062 NC_014313.1 2111461 2111592 R hypothetical protein complement(2111461..2111592) Hyphomicrobium denitrificans ATCC 51888 9387963 YP_003756185.1 CDS Hden_2063 NC_014313.1 2111768 2111998 R KEGG: ecb:100054150 hypothetical protein LOC100054150; hypothetical protein complement(2111768..2111998) Hyphomicrobium denitrificans ATCC 51888 9387964 YP_003756186.1 CDS Hden_2064 NC_014313.1 2112030 2112167 D KEGG: mea:Mex_1p1601 hypothetical protein; hypothetical protein 2112030..2112167 Hyphomicrobium denitrificans ATCC 51888 9387965 YP_003756187.1 CDS Hden_2066 NC_014313.1 2113398 2113514 D hypothetical protein 2113398..2113514 Hyphomicrobium denitrificans ATCC 51888 9387967 YP_003756188.1 CDS Hden_2067 NC_014313.1 2113540 2114241 D KEGG: rsq:Rsph17025_4400 hypothetical protein; hypothetical protein 2113540..2114241 Hyphomicrobium denitrificans ATCC 51888 9387968 YP_003756189.1 CDS Hden_2068 NC_014313.1 2114864 2115889 R PFAM: patatin; KEGG: bja:bll7964 hypothetical protein; patatin complement(2114864..2115889) Hyphomicrobium denitrificans ATCC 51888 9387969 YP_003756190.1 CDS Hden_2069 NC_014313.1 2116319 2117773 D PFAM: citrate transporter; KEGG: msl:Msil_2569 citrate transporter; citrate transporter 2116319..2117773 Hyphomicrobium denitrificans ATCC 51888 9387970 YP_003756191.1 CDS Hden_2070 NC_014313.1 2117874 2118365 D manually curated; KEGG: msl:Msil_1032 hypothetical protein; hypothetical protein 2117874..2118365 Hyphomicrobium denitrificans ATCC 51888 9387971 YP_003756192.1 CDS Hden_2072 NC_014313.1 2120360 2121940 R KEGG: xau:Xaut_1329 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(2120360..2121940) Hyphomicrobium denitrificans ATCC 51888 9387974 YP_003756193.1 CDS Hden_2073 NC_014313.1 2122384 2122944 D PFAM: cytochrome B561; KEGG: pfs:PFLU3913 cytochrome b561; cytochrome B561 2122384..2122944 Hyphomicrobium denitrificans ATCC 51888 9387975 YP_003756194.1 CDS Hden_2074 NC_014313.1 2122959 2123873 R KEGG: smd:Smed_1932 PhzF family phenazine biosynthesis protein; TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; phenazine biosynthesis protein PhzF family complement(2122959..2123873) Hyphomicrobium denitrificans ATCC 51888 9387976 YP_003756195.1 CDS Hden_2075 NC_014313.1 2123986 2124729 R PFAM: NUDIX hydrolase; KEGG: mno:Mnod_0955 NUDIX hydrolase; NUDIX hydrolase complement(2123986..2124729) Hyphomicrobium denitrificans ATCC 51888 9387977 YP_003756196.1 CDS Hden_2076 NC_014313.1 2125449 2126468 R TIGRFAM: ketol-acid reductoisomerase; KEGG: msl:Msil_3011 ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase complement(2125449..2126468) Hyphomicrobium denitrificans ATCC 51888 9387978 YP_003756197.1 CDS Hden_2077 NC_014313.1 2126711 2127259 R KEGG: mes:Meso_1489 acetolactate synthase 3 regulatory subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; acetolactate synthase, small subunit complement(2126711..2127259) Hyphomicrobium denitrificans ATCC 51888 9387979 YP_003756198.1 CDS Hden_2078 NC_014313.1 2127277 2127951 R PFAM: glutathione S-transferase domain; KEGG: bbt:BBta_4787 glutathione S-transferase (GST); glutathione S-transferase complement(2127277..2127951) Hyphomicrobium denitrificans ATCC 51888 9387980 YP_003756199.1 CDS Hden_2079 NC_014313.1 2127954 2128487 R KEGG: bmr:BMI_I1357 iron compound ABC transporter periplasmic iron compound-binding protein; hypothetical protein complement(2127954..2128487) Hyphomicrobium denitrificans ATCC 51888 9387981 YP_003756200.1 CDS Hden_2080 NC_014313.1 2128484 2130250 R KEGG: xau:Xaut_1488 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; acetolactate synthase, large subunit, biosynthetic type complement(2128484..2130250) Hyphomicrobium denitrificans ATCC 51888 9387982 YP_003756201.1 CDS Hden_2081 NC_014313.1 2130346 2131278 R TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; KEGG: pla:Plav_2463 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(2130346..2131278) Hyphomicrobium denitrificans ATCC 51888 9387983 YP_003756202.1 CDS Hden_2082 NC_014313.1 2131358 2132626 R PFAM: carbohydrate-selective porin OprB; KEGG: mea:Mex_2p0466 hypothetical protein; carbohydrate-selective porin OprB complement(2131358..2132626) Hyphomicrobium denitrificans ATCC 51888 9387984 YP_003756203.1 CDS Hden_2083 NC_014313.1 2132916 2133521 R KEGG: rfr:Rfer_0625 hypothetical protein; hypothetical protein complement(2132916..2133521) Hyphomicrobium denitrificans ATCC 51888 9387985 YP_003756204.1 CDS Hden_2084 NC_014313.1 2133822 2134274 D KEGG: mes:Meso_4276 pseudoazurin; TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; pseudoazurin 2133822..2134274 Hyphomicrobium denitrificans ATCC 51888 9387986 YP_003756205.1 CDS Hden_2085 NC_014313.1 2134388 2136331 R KEGG: mea:Mex_1p5196 ABC transporter fused ATPase and permease domains; PFAM: ABC transporter; ABC transporter transmembrane region; SMART: ATPase AAA; ABC transporter complement(2134388..2136331) Hyphomicrobium denitrificans ATCC 51888 9387987 YP_003756206.1 CDS Hden_2086 NC_014313.1 2136367 2138091 R KEGG: ddi:DDBDRAFT_0216653 hypothetical protein; PFAM: peptidoglycan-binding lysin domain; SMART: peptidoglycan-binding LysM; peptidoglycan-binding lysin domain-containing protein complement(2136367..2138091) Hyphomicrobium denitrificans ATCC 51888 9387988 YP_003756207.1 CDS Hden_2087 NC_014313.1 2138315 2138968 D PFAM: conserved hypothetical protein; KEGG: mno:Mnod_1637 hypothetical protein; hypothetical protein 2138315..2138968 Hyphomicrobium denitrificans ATCC 51888 9387989 YP_003756208.1 CDS Hden_2088 NC_014313.1 2139109 2140083 D TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; KEGG: xau:Xaut_5042 LAO/AO transporter ATPase; SMART: ATPase AAA; LAO/AO transporter ATPase 2139109..2140083 Hyphomicrobium denitrificans ATCC 51888 9387990 YP_003756209.1 CDS Hden_2089 NC_014313.1 2140128 2141609 R PFAM: amino acid permease-associated region; KEGG: cja:CJA_1051 amino acid permease; amino acid permease-associated protein complement(2140128..2141609) Hyphomicrobium denitrificans ATCC 51888 9387991 YP_003756210.1 CDS Hden_2090 NC_014313.1 2141741 2142205 D PFAM: Iron sulphur domain-containing, CDGSH-type; KEGG: jan:Jann_3396 zinc finger, CDGSH-type; CDGSH-type iron sulfur domain-containing protein 2141741..2142205 Hyphomicrobium denitrificans ATCC 51888 9387992 YP_003756211.1 CDS Hden_2091 NC_014313.1 2142382 2142585 R hypothetical protein complement(2142382..2142585) Hyphomicrobium denitrificans ATCC 51888 9387993 YP_003756212.1 CDS Hden_2092 NC_014313.1 2142996 2144303 D KEGG: rlt:Rleg2_1921 adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; adenylosuccinate lyase-like; adenylosuccinate lyase 2142996..2144303 Hyphomicrobium denitrificans ATCC 51888 9387994 YP_003756213.1 CDS Hden_2093 NC_014313.1 2144469 2145239 D KEGG: azo:azo2163 hypothetical protein; PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; PA-phosphatase-like phosphoesterase 2144469..2145239 Hyphomicrobium denitrificans ATCC 51888 9387995 YP_003756214.1 CDS Hden_2094 NC_014313.1 2145336 2146481 D KEGG: bbt:BBta_5297 dolichol-phosphate mannosyltransferase; PFAM: glycosyl transferase family 2; GtrA family protein; dolichyl-phosphate beta-D-mannosyltransferase 2145336..2146481 Hyphomicrobium denitrificans ATCC 51888 9387996 YP_003756215.1 CDS Hden_2095 NC_014313.1 2146481 2147989 D KEGG: rpt:Rpal_4304 hypothetical protein; hypothetical protein 2146481..2147989 Hyphomicrobium denitrificans ATCC 51888 9387997 YP_003756216.1 CDS Hden_2096 NC_014313.1 2147999 2148487 R PFAM: protein of unknown function DUF892; KEGG: oca:OCAR_5362 hypothetical protein; hypothetical protein complement(2147999..2148487) Hyphomicrobium denitrificans ATCC 51888 9387998 YP_003756217.1 CDS Hden_2097 NC_014313.1 2148621 2149205 D PFAM: protein of unknown function DUF1234; KEGG: xau:Xaut_2551 hypothetical protein; hypothetical protein 2148621..2149205 Hyphomicrobium denitrificans ATCC 51888 9387999 YP_003756218.1 CDS Hden_2098 NC_014313.1 2149493 2149816 R PFAM: protein of unknown function DUF1476; KEGG: azc:AZC_2227 hypothetical protein; hypothetical protein complement(2149493..2149816) Hyphomicrobium denitrificans ATCC 51888 9388000 YP_003756219.1 CDS Hden_2099 NC_014313.1 2150202 2150993 D TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: bbt:BBta_5409 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2150202..2150993 Hyphomicrobium denitrificans ATCC 51888 9388001 YP_003756220.1 CDS Hden_2100 NC_014313.1 2151061 2151303 D KEGG: pla:Plav_2588 phosphoribosylformylglycinamidine synthase, PurS; TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase, purS 2151061..2151303 Hyphomicrobium denitrificans ATCC 51888 9388002 YP_003756221.1 CDS Hden_2101 NC_014313.1 2151303 2151767 D KEGG: lsp:Bsph_1309 hypothetical protein; hypothetical protein 2151303..2151767 Hyphomicrobium denitrificans ATCC 51888 9388003 YP_003756222.1 CDS Hden_2102 NC_014313.1 2152490 2153194 D TIGRFAM: phosphoribosylformylglycinamidine synthase I; KEGG: sal:Sala_0591 phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; phosphoribosylformylglycinamidine synthase I 2152490..2153194 Hyphomicrobium denitrificans ATCC 51888 9388004 YP_003756223.1 CDS Hden_2103 NC_014313.1 2153766 2154026 D KEGG: hne:HNE_1530 hypothetical protein; hypothetical protein 2153766..2154026 Hyphomicrobium denitrificans ATCC 51888 9388005 YP_003756224.1 CDS Hden_2104 NC_014313.1 2154095 2154472 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlg:Rleg_2347 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(2154095..2154472) Hyphomicrobium denitrificans ATCC 51888 9388006 YP_003756225.1 CDS Hden_2105 NC_014313.1 2155042 2155431 R KEGG: seu:SEQ_0613 glucokinase; hypothetical protein complement(2155042..2155431) Hyphomicrobium denitrificans ATCC 51888 9388007 YP_003756226.1 CDS Hden_2106 NC_014313.1 2156053 2158290 D TIGRFAM: phosphoribosylformylglycinamidine synthase II; KEGG: bra:BRADO2785 phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase II 2156053..2158290 Hyphomicrobium denitrificans ATCC 51888 9388008 YP_003756227.1 CDS Hden_2107 NC_014313.1 2158333 2158785 D KEGG: rpb:RPB_2929 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type; peptidylprolyl isomerase 2158333..2158785 Hyphomicrobium denitrificans ATCC 51888 9388009 YP_003756228.1 CDS Hden_2108 NC_014313.1 2158900 2159196 R KEGG: cel:M199.5 COLlagen; hypothetical protein complement(2158900..2159196) Hyphomicrobium denitrificans ATCC 51888 9388010 YP_003756229.1 CDS Hden_2109 NC_014313.1 2159480 2160310 D PFAM: protein of unknown function DUF2147; KEGG: xau:Xaut_1034 hypothetical protein; hypothetical protein 2159480..2160310 Hyphomicrobium denitrificans ATCC 51888 9388011 YP_003756230.1 CDS Hden_2110 NC_014313.1 2160432 2160533 R KEGG: mex:Mext_1820 coenzyme PQQ biosynthesis protein A; TIGRFAM: coenzyme PQQ biosynthesis protein A; PFAM: coenzyme PQQ biosynthesis protein A; coenzyme PQQ biosynthesis protein A complement(2160432..2160533) Hyphomicrobium denitrificans ATCC 51888 9388012 YP_003756231.1 CDS Hden_2111 NC_014313.1 2160717 2160953 D PFAM: BolA family protein; KEGG: met:M446_0006 BolA family protein; BolA family protein 2160717..2160953 Hyphomicrobium denitrificans ATCC 51888 9388013 YP_003756232.1 CDS Hden_2112 NC_014313.1 2161031 2161375 D KEGG: sjp:SJA_C1-28240 monothiol glutaredoxin; TIGRFAM: glutaredoxin; PFAM: glutaredoxin; glutaredoxin 2161031..2161375 Hyphomicrobium denitrificans ATCC 51888 9388014 YP_003756233.1 CDS Hden_2113 NC_014313.1 2161454 2164609 R KEGG: bja:blr6726 AcrB/AcrD/AcrF family protein; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(2161454..2164609) Hyphomicrobium denitrificans ATCC 51888 9388015 YP_003756234.1 CDS Hden_2114 NC_014313.1 2164606 2165832 R KEGG: bja:blr6725 multidrug resistance protein; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2164606..2165832) Hyphomicrobium denitrificans ATCC 51888 9388016 YP_003756235.1 CDS Hden_2115 NC_014313.1 2166053 2166403 R KEGG: oaa:100079982 similar to betacellulin; BTC; hypothetical protein complement(2166053..2166403) Hyphomicrobium denitrificans ATCC 51888 9388017 YP_003756236.1 CDS Hden_2116 NC_014313.1 2166625 2167710 D PFAM: paraquat-inducible protein A; KEGG: ypb:YPTS_2454 PqiA family integral membrane protein; paraquat-inducible protein A 2166625..2167710 Hyphomicrobium denitrificans ATCC 51888 9388018 YP_003756237.1 CDS Hden_2117 NC_014313.1 2167785 2169500 R PFAM: general substrate transporter; KEGG: xau:Xaut_3353 major facilitator transporter; general substrate transporter complement(2167785..2169500) Hyphomicrobium denitrificans ATCC 51888 9388019 YP_003756238.1 CDS Hden_2118 NC_014313.1 2169758 2170375 R TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; KEGG: bmc:BAbS19_I07930 30S ribosomal protein S4; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 complement(2169758..2170375) Hyphomicrobium denitrificans ATCC 51888 9388020 YP_003756239.1 CDS Hden_2119 NC_014313.1 2170587 2171234 R KEGG: edi:EDI_115560 chromosome-associated kinesin KIF4A; hypothetical protein complement(2170587..2171234) Hyphomicrobium denitrificans ATCC 51888 9388021 YP_003756240.1 CDS Hden_2120 NC_014313.1 2171370 2172662 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: avi:Avi_1915 tRNA/rRNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(2171370..2172662) Hyphomicrobium denitrificans ATCC 51888 9388022 YP_003756241.1 CDS Hden_2121 NC_014313.1 2172922 2174142 D KEGG: rlt:Rleg2_1953 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; NADP-dependent isocitrate dehydrogenase 2172922..2174142 Hyphomicrobium denitrificans ATCC 51888 9388023 YP_003756242.1 CDS Hden_2122 NC_014313.1 2174177 2174785 D PFAM: methyltransferase type 12; KEGG: gau:GAU_0808 hypothetical protein; type 12 methyltransferase 2174177..2174785 Hyphomicrobium denitrificans ATCC 51888 9388024 YP_003756243.1 CDS Hden_2123 NC_014313.1 2174945 2175430 R KEGG: sde:Sde_1827 heat shock protein DnaJ-like; hypothetical protein complement(2174945..2175430) Hyphomicrobium denitrificans ATCC 51888 9388025 YP_003756244.1 CDS Hden_2124 NC_014313.1 2175666 2178359 R TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; phosphoesterase DHHA1; threonyl/alanyl tRNA synthetase SAD; KEGG: bmr:BMI_I1212 alanyl-tRNA synthetase; SMART: threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase complement(2175666..2178359) Hyphomicrobium denitrificans ATCC 51888 9388026 YP_003756245.1 CDS Hden_2125 NC_014313.1 2178814 2179947 R TIGRFAM: recA protein; PFAM: RecA domain protein; KEGG: hba:Hbal_0258 RecA protein; SMART: ATPase AAA; recA protein complement(2178814..2179947) Hyphomicrobium denitrificans ATCC 51888 9388027 YP_003756246.1 CDS Hden_2126 NC_014313.1 2180153 2180710 D KEGG: mfa:Mfla_2364 formaldehyde-activating enzyme; TIGRFAM: formaldehyde-activating enzyme; PFAM: Formaldehyde-activating enzyme (Fae); formaldehyde-activating enzyme 2180153..2180710 Hyphomicrobium denitrificans ATCC 51888 9388028 YP_003756247.1 CDS Hden_2127 NC_014313.1 2181426 2184032 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: rpt:Rpal_4405 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; multi-sensor hybrid histidine kinase complement(2181426..2184032) Hyphomicrobium denitrificans ATCC 51888 9388029 YP_003756248.1 CDS Hden_2128 NC_014313.1 2184203 2184592 D KEGG: ret:RHE_CH02327 hypothetical protein; hypothetical protein 2184203..2184592 Hyphomicrobium denitrificans ATCC 51888 9388030 YP_003756249.1 CDS Hden_2129 NC_014313.1 2184704 2184973 R KEGG: mrd:Mrad2831_4663 multi-sensor signal transduction histidine kinase; hypothetical protein complement(2184704..2184973) Hyphomicrobium denitrificans ATCC 51888 9388031 YP_003756250.1 CDS Hden_2130 NC_014313.1 2185252 2185974 R KEGG: pla:Plav_2558 TraR/DksA family transcriptional regulator; TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; TraR/DksA family transcriptional regulator complement(2185252..2185974) Hyphomicrobium denitrificans ATCC 51888 9388032 YP_003756251.1 CDS Hden_2131 NC_014313.1 2186295 2187140 D KEGG: rpe:RPE_2031 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: ATPase AAA; ATPase AAA 2186295..2187140 Hyphomicrobium denitrificans ATCC 51888 9388033 YP_003756252.1 CDS Hden_2132 NC_014313.1 2187339 2187653 D KEGG: gob:Gobs_0429 hypothetical protein; hypothetical protein 2187339..2187653 Hyphomicrobium denitrificans ATCC 51888 9388034 YP_003756253.1 CDS Hden_2133 NC_014313.1 2187942 2189981 D TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: scl:sce2064 asparagine synthetase; PFAM: asparagine synthase; glutamine amidotransferase class-II; asparagine synthase 2187942..2189981 Hyphomicrobium denitrificans ATCC 51888 9388035 YP_003756254.1 CDS Hden_2134 NC_014313.1 2190003 2190674 R PFAM: regulatory protein TetR; KEGG: oan:Oant_4225 TetR family transcriptional regulator; TetR family transcriptional regulator complement(2190003..2190674) Hyphomicrobium denitrificans ATCC 51888 9388036 YP_003756255.1 CDS Hden_2135 NC_014313.1 2190838 2192142 D PFAM: secretion protein HlyD; KEGG: rhi:NGR_c29530 multidrug resistance protein; secretion protein HlyD 2190838..2192142 Hyphomicrobium denitrificans ATCC 51888 9388037 YP_003756256.1 CDS Hden_2136 NC_014313.1 2192176 2193777 D KEGG: mlo:mlr4819 multidrug resistance protein B (drug efflux transporter); TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 2192176..2193777 Hyphomicrobium denitrificans ATCC 51888 9388038 YP_003756257.1 CDS Hden_2137 NC_014313.1 2193844 2196135 R PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_3051 TonB-dependent receptor; TonB-dependent receptor complement(2193844..2196135) Hyphomicrobium denitrificans ATCC 51888 9388039 YP_003756258.1 CDS Hden_2138 NC_014313.1 2196452 2196931 D KEGG: avi:Avi_3464 Acr family transporter; hypothetical protein 2196452..2196931 Hyphomicrobium denitrificans ATCC 51888 9388040 YP_003756259.1 CDS Hden_2139 NC_014313.1 2196995 2197360 D KEGG: cyn:Cyan7425_1215 hypothetical protein; hypothetical protein 2196995..2197360 Hyphomicrobium denitrificans ATCC 51888 9388041 YP_003756260.1 CDS Hden_2140 NC_014313.1 2197738 2198403 D PFAM: protein of unknown function DUF2076; KEGG: rle:RL3516 hypothetical protein; periplasmic ligand-binding sensor protein 2197738..2198403 Hyphomicrobium denitrificans ATCC 51888 9388042 YP_003756261.1 CDS Hden_2141 NC_014313.1 2198566 2198721 D KEGG: isc:IscW_ISCW020284 classical arabinogalactan protein; arabinogalactan protein 2198566..2198721 Hyphomicrobium denitrificans ATCC 51888 9388043 YP_003756262.1 CDS Hden_2142 NC_014313.1 2198871 2199662 D PFAM: protein of unknown function DUF1236; KEGG: mrd:Mrad2831_2945 hypothetical protein; hypothetical protein 2198871..2199662 Hyphomicrobium denitrificans ATCC 51888 9388044 YP_003756263.1 CDS Hden_2143 NC_014313.1 2200052 2200288 D KEGG: tcr:504433.20 hypothetical protein; hypothetical protein 2200052..2200288 Hyphomicrobium denitrificans ATCC 51888 9388045 YP_003756264.1 CDS Hden_2144 NC_014313.1 2200441 2201040 D PFAM: glutathione S-transferase domain; KEGG: glutathione S-transferase; glutathione S-transferase 2200441..2201040 Hyphomicrobium denitrificans ATCC 51888 9388046 YP_003756265.1 CDS Hden_2145 NC_014313.1 2201755 2202183 D KEGG: pdi:BDI_3126 hypothetical protein; hypothetical protein 2201755..2202183 Hyphomicrobium denitrificans ATCC 51888 9388047 YP_003756266.1 CDS Hden_2146 NC_014313.1 2202209 2202784 R KEGG: bja:bll6012 hypothetical protein; hypothetical protein complement(2202209..2202784) Hyphomicrobium denitrificans ATCC 51888 9388048 YP_003756267.1 CDS Hden_2147 NC_014313.1 2202786 2203364 R PFAM: general secretion pathway protein M; KEGG: alv:Alvin_3008 general secretion pathway protein M; general secretion pathway protein M complement(2202786..2203364) Hyphomicrobium denitrificans ATCC 51888 9388049 YP_003756268.1 CDS Hden_2148 NC_014313.1 2203364 2204458 R PFAM: fimbrial assembly family protein; KEGG: noc:Noc_0758 general secretion pathway protein L; fimbrial assembly family protein complement(2203364..2204458) Hyphomicrobium denitrificans ATCC 51888 9388050 YP_003756269.1 CDS Hden_2149 NC_014313.1 2204458 2205375 R KEGG: nhl:Nhal_3652 general secretion pathway protein K; hypothetical protein complement(2204458..2205375) Hyphomicrobium denitrificans ATCC 51888 9388051 YP_003756270.1 CDS Hden_2150 NC_014313.1 2205380 2206114 R KEGG: msl:Msil_0915 general secretion pathway protein J; hypothetical protein complement(2205380..2206114) Hyphomicrobium denitrificans ATCC 51888 9388052 YP_003756271.1 CDS Hden_2151 NC_014313.1 2206107 2206556 R KEGG: eba:ebB44 general secretion pathway protein I; hypothetical protein complement(2206107..2206556) Hyphomicrobium denitrificans ATCC 51888 9388053 YP_003756272.1 CDS Hden_2152 NC_014313.1 2206501 2206977 R TIGRFAM: general secretion pathway protein H; KEGG: bbt:BBta_1281 general secretion pathway protein H, GspH; general secretion pathway protein H complement(2206501..2206977) Hyphomicrobium denitrificans ATCC 51888 9388054 YP_003756273.1 CDS Hden_2153 NC_014313.1 2206958 2207425 R KEGG: nhl:Nhal_0441 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G complement(2206958..2207425) Hyphomicrobium denitrificans ATCC 51888 9388055 YP_003756274.1 CDS Hden_2154 NC_014313.1 2207439 2208650 R PFAM: type II secretion system F domain; KEGG: nhl:Nhal_0440 type II secretion system protein; type II secretion system F domain-containing protein complement(2207439..2208650) Hyphomicrobium denitrificans ATCC 51888 9388056 YP_003756275.1 CDS Hden_2155 NC_014313.1 2208753 2210417 R KEGG: bja:bll6021 general secretion pathway protein E; PFAM: type II secretion system protein E; general secretory system II protein E domain protein; SMART: ATPase AAA; type II secretion system protein E complement(2208753..2210417) Hyphomicrobium denitrificans ATCC 51888 9388057 YP_003756276.1 CDS Hden_2156 NC_014313.1 2210849 2213170 D KEGG: xau:Xaut_2106 general secretion pathway protein D; TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D 2210849..2213170 Hyphomicrobium denitrificans ATCC 51888 9388058 YP_003756277.1 CDS Hden_2157 NC_014313.1 2213217 2213771 R PFAM: peptidase A24A prepilin type IV; KEGG: bja:blr6023 prepilin peptidase; peptidase A24A prepilin type IV complement(2213217..2213771) Hyphomicrobium denitrificans ATCC 51888 9388059 YP_003756278.1 CDS Hden_2158 NC_014313.1 2213857 2214897 R KEGG: bra:BRADO3285 AraC/XylS family transcription factor; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator complement(2213857..2214897) Hyphomicrobium denitrificans ATCC 51888 9388060 YP_003756279.1 CDS Hden_2159 NC_014313.1 2215393 2217075 D PFAM: carboxylesterase type B; KEGG: msl:Msil_2379 carboxylesterase type B; carboxylesterase type B 2215393..2217075 Hyphomicrobium denitrificans ATCC 51888 9388061 YP_003756280.1 CDS Hden_2160 NC_014313.1 2217443 2219173 D PFAM: carboxylesterase type B; KEGG: msl:Msil_3599 carboxylesterase type B; carboxylesterase type B 2217443..2219173 Hyphomicrobium denitrificans ATCC 51888 9388062 YP_003756281.1 CDS Hden_2161 NC_014313.1 2219236 2219427 R KEGG: lbr:LVIS_2054 hypothetical protein; hypothetical protein complement(2219236..2219427) Hyphomicrobium denitrificans ATCC 51888 9388063 YP_003756282.1 CDS Hden_2162 NC_014313.1 2219694 2220680 D KEGG: bra:BRADO3285 AraC/XylS family transcription factor; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2219694..2220680 Hyphomicrobium denitrificans ATCC 51888 9388064 YP_003756283.1 CDS Hden_2163 NC_014313.1 2220919 2222127 D KEGG: msl:Msil_3887 hypothetical protein; hypothetical protein 2220919..2222127 Hyphomicrobium denitrificans ATCC 51888 9388065 YP_003756284.1 CDS Hden_2164 NC_014313.1 2222260 2222850 D KEGG: msl:Msil_1853 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; AraC family transcriptional regulator 2222260..2222850 Hyphomicrobium denitrificans ATCC 51888 9388066 YP_003756285.1 CDS Hden_2165 NC_014313.1 2223054 2224238 D KEGG: msl:Msil_1852 hypothetical protein; hypothetical protein 2223054..2224238 Hyphomicrobium denitrificans ATCC 51888 9388067 YP_003756286.1 CDS Hden_2166 NC_014313.1 2224524 2225837 D PFAM: Mur ligase middle domain protein; KEGG: ppd:Ppro_2742 Mur ligase middle domain-containing protein; Mur ligase middle domain-containing protein 2224524..2225837 Hyphomicrobium denitrificans ATCC 51888 9388068 YP_003756287.1 CDS Hden_2167 NC_014313.1 2226402 2227307 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: xau:Xaut_1906 hypothetical protein; hypothetical protein 2226402..2227307 Hyphomicrobium denitrificans ATCC 51888 9388070 YP_003756288.1 CDS Hden_2168 NC_014313.1 2227282 2228430 R TIGRFAM: queuine tRNA-ribosyltransferase; tRNA-guanine transglycosylase, various specificities; KEGG: pla:Plav_3054 queuine tRNA-ribosyltransferase; PFAM: queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(2227282..2228430) Hyphomicrobium denitrificans ATCC 51888 9388071 YP_003756289.1 CDS Hden_2169 NC_014313.1 2228434 2229546 R KEGG: rec:RHECIAT_CH0002168 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase complement(2228434..2229546) Hyphomicrobium denitrificans ATCC 51888 9388072 YP_003756290.1 CDS Hden_2170 NC_014313.1 2229557 2229964 R PFAM: protein of unknown function DUF423; KEGG: bid:Bind_3362 hypothetical protein; hypothetical protein complement(2229557..2229964) Hyphomicrobium denitrificans ATCC 51888 9388073 YP_003756291.1 CDS Hden_2171 NC_014313.1 2229964 2230440 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: hne:HNE_1405 peptidyl-prolyl cis-trans isomerase, cyclophilin-type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2229964..2230440) Hyphomicrobium denitrificans ATCC 51888 9388074 YP_003756292.1 CDS Hden_2172 NC_014313.1 2230513 2231052 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mno:Mnod_5192 peptidyl-prolyl cis-trans isomerase cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(2230513..2231052) Hyphomicrobium denitrificans ATCC 51888 9388075 YP_003756293.1 CDS Hden_2173 NC_014313.1 2231215 2231607 R PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: psl:Psta_0102 methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein complement(2231215..2231607) Hyphomicrobium denitrificans ATCC 51888 9388076 YP_003756294.1 CDS Hden_2174 NC_014313.1 2231627 2232130 R TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; KEGG: azc:AZC_2326 coenzyme A biosynthesis protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(2231627..2232130) Hyphomicrobium denitrificans ATCC 51888 9388077 YP_003756295.1 CDS Hden_2175 NC_014313.1 2232162 2233241 R KEGG: bja:blr3114 hypothetical protein; hypothetical protein complement(2232162..2233241) Hyphomicrobium denitrificans ATCC 51888 9388078 YP_003756296.1 CDS Hden_2177 NC_014313.1 2234381 2235112 D KEGG: mno:Mnod_6164 transcriptional regulator, Crp/Fnr family; PFAM: regulatory protein Crp; SMART: regulatory protein Crp; Crp/Fnr family transcriptional regulator 2234381..2235112 Hyphomicrobium denitrificans ATCC 51888 9388080 YP_003756297.1 CDS Hden_2178 NC_014313.1 2235102 2237849 R KEGG: oca:OCAR_6233 DNA gyrase subunit A; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; manually curated; TIGRFAM: DNA gyrase subunit alpha; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit alpha complement(2235102..2237849) Hyphomicrobium denitrificans ATCC 51888 9388081 YP_003756298.1 CDS Hden_2179 NC_014313.1 2238173 2238775 D PFAM: PRC-barrel domain protein; KEGG: rec:RHECIAT_CH0000940 hypothetical protein; PRC-barrel domain-containing protein 2238173..2238775 Hyphomicrobium denitrificans ATCC 51888 9388082 YP_003756299.1 CDS Hden_2180 NC_014313.1 2238912 2239283 D PFAM: cytochrome C class I; KEGG: bja:blr6637 cytochrome C; cytochrome C class I 2238912..2239283 Hyphomicrobium denitrificans ATCC 51888 9388083 YP_003756300.1 CDS Hden_2181 NC_014313.1 2239582 2240535 D KEGG: gdj:Gdia_1776 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 2239582..2240535 Hyphomicrobium denitrificans ATCC 51888 9388084 YP_003756301.1 CDS Hden_2182 NC_014313.1 2240756 2241277 R KEGG: bja:bll4698 single-stranded DNA-binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein complement(2240756..2241277) Hyphomicrobium denitrificans ATCC 51888 9388085 YP_003756302.1 CDS Hden_2183 NC_014313.1 2241651 2242019 D PFAM: protein of unknown function UPF0153; KEGG: scl:sce0610 hypothetical protein; hypothetical protein 2241651..2242019 Hyphomicrobium denitrificans ATCC 51888 9388086 YP_003756303.1 CDS Hden_2184 NC_014313.1 2242096 2242509 D KEGG: smt:Smal_1233 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 2242096..2242509 Hyphomicrobium denitrificans ATCC 51888 9388087 YP_003756304.1 CDS Hden_2185 NC_014313.1 2242852 2243040 D KEGG: mea:Mex_2p0836 hypothetical protein; hypothetical protein 2242852..2243040 Hyphomicrobium denitrificans ATCC 51888 9388088 YP_003756305.1 CDS Hden_2186 NC_014313.1 2243183 2243578 D PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: msl:Msil_0879 glutathione-dependent formaldehyde-activating GFA; glutathione-dependent formaldehyde-activating protein 2243183..2243578 Hyphomicrobium denitrificans ATCC 51888 9388089 YP_003756306.1 CDS Hden_2187 NC_014313.1 2243631 2244251 R KEGG: pap:PSPA7_2347 two-component sensor; hypothetical protein complement(2243631..2244251) Hyphomicrobium denitrificans ATCC 51888 9388090 YP_003756307.1 CDS Hden_2188 NC_014313.1 2245037 2245420 R KEGG: mar:MAE_16700 hypothetical protein; hypothetical protein complement(2245037..2245420) Hyphomicrobium denitrificans ATCC 51888 9388091 YP_003756308.1 CDS Hden_2189 NC_014313.1 2245522 2248653 D KEGG: rpe:RPE_2890 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC subunit A; PFAM: ABC transporter; excinuclease ABC subunit A 2245522..2248653 Hyphomicrobium denitrificans ATCC 51888 9388092 YP_003756309.1 CDS Hden_2190 NC_014313.1 2249051 2249524 D PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: oca:OCAR_5407 3-demethylubiquinone-9 3-methyltransferase; 3-demethylubiquinone-9 3-methyltransferase 2249051..2249524 Hyphomicrobium denitrificans ATCC 51888 9388093 YP_003756310.1 CDS Hden_2191 NC_014313.1 2249705 2251144 R KEGG: hypothetical protein; hypothetical protein complement(2249705..2251144) Hyphomicrobium denitrificans ATCC 51888 9388094 YP_003756311.1 CDS Hden_2192 NC_014313.1 2251131 2252477 R KEGG: avn:Avin_17420 hypothetical protein; hypothetical protein complement(2251131..2252477) Hyphomicrobium denitrificans ATCC 51888 9388095 YP_003756312.1 CDS Hden_2193 NC_014313.1 2252487 2252873 R manually curated; KEGG: avn:Avin_17410 hypothetical protein; hypothetical protein complement(2252487..2252873) Hyphomicrobium denitrificans ATCC 51888 9388096 YP_003756313.1 CDS Hden_2194 NC_014313.1 2253735 2254079 D KEGG: rso:RSp1381 PhnA protein alkylphosphonate uptake; TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; alkylphosphonate utilization operon protein PhnA 2253735..2254079 Hyphomicrobium denitrificans ATCC 51888 9388097 YP_003756314.1 CDS Hden_2195 NC_014313.1 2254306 2254605 R KEGG: oca:OCAR_5920 hypothetical protein; hypothetical protein complement(2254306..2254605) Hyphomicrobium denitrificans ATCC 51888 9388098 YP_003756315.1 CDS Hden_2196 NC_014313.1 2254686 2254808 R hypothetical protein complement(2254686..2254808) Hyphomicrobium denitrificans ATCC 51888 9388099 YP_003756316.1 CDS Hden_2197 NC_014313.1 2254935 2255642 D PFAM: carbonic anhydrase; KEGG: nha:Nham_0361 carbonic anhydrase; carbonic anhydrase 2254935..2255642 Hyphomicrobium denitrificans ATCC 51888 9388100 YP_003756317.1 CDS Hden_2198 NC_014313.1 2255668 2255946 R KEGG: svi:Svir_04970 IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase; hypothetical protein complement(2255668..2255946) Hyphomicrobium denitrificans ATCC 51888 9388101 YP_003756318.1 CDS Hden_2199 NC_014313.1 2256075 2256362 R KEGG: krh:KRH_11940 TerC family integral membrane protein; hypothetical protein complement(2256075..2256362) Hyphomicrobium denitrificans ATCC 51888 9388102 YP_003756319.1 CDS Hden_2200 NC_014313.1 2256570 2257415 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bcg:BCG9842_B2506 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2256570..2257415 Hyphomicrobium denitrificans ATCC 51888 9388103 YP_003756320.1 CDS Hden_2201 NC_014313.1 2257467 2257754 D KEGG: nha:Nham_2665 hypothetical protein; hypothetical protein 2257467..2257754 Hyphomicrobium denitrificans ATCC 51888 9388104 YP_003756321.1 CDS Hden_2202 NC_014313.1 2257851 2259071 D PFAM: beta-lactamase; KEGG: mmr:Mmar10_2357 beta-lactamase; beta-lactamase 2257851..2259071 Hyphomicrobium denitrificans ATCC 51888 9388105 YP_003756322.1 CDS Hden_2203 NC_014313.1 2259068 2260387 R PFAM: major facilitator superfamily MFS_1; KEGG: phe:Phep_2211 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(2259068..2260387) Hyphomicrobium denitrificans ATCC 51888 9388106 YP_003756323.1 CDS Hden_2204 NC_014313.1 2260414 2260701 R KEGG: bgl:bglu_2g09750 PvdI; hypothetical protein complement(2260414..2260701) Hyphomicrobium denitrificans ATCC 51888 9388107 YP_003756324.1 CDS Hden_2205 NC_014313.1 2260915 2261049 D hypothetical protein 2260915..2261049 Hyphomicrobium denitrificans ATCC 51888 9388108 YP_003756325.1 CDS Hden_2206 NC_014313.1 2261116 2262093 R TIGRFAM: TonB family protein; KEGG: rce:RC1_1801 protein TonB; TonB family protein complement(2261116..2262093) Hyphomicrobium denitrificans ATCC 51888 9388109 YP_003756326.1 CDS Hden_2207 NC_014313.1 2262331 2263200 D PFAM: protein of unknown function DUF72; KEGG: mes:Meso_1394 hypothetical protein; hypothetical protein 2262331..2263200 Hyphomicrobium denitrificans ATCC 51888 9388110 YP_003756327.1 CDS Hden_2208 NC_014313.1 2263210 2263485 R KEGG: swi:Swit_4654 peptidase M48, Ste24p; peptidase M48, Ste24p complement(2263210..2263485) Hyphomicrobium denitrificans ATCC 51888 9388111 YP_003756328.1 CDS Hden_2209 NC_014313.1 2263580 2263981 R KEGG: bja:bll5579 hypothetical protein; hypothetical protein complement(2263580..2263981) Hyphomicrobium denitrificans ATCC 51888 9388112 YP_003756329.1 CDS Hden_2210 NC_014313.1 2264378 2264659 D KEGG: bba:Bd1303 hypothetical protein; hypothetical protein 2264378..2264659 Hyphomicrobium denitrificans ATCC 51888 9388113 YP_003756330.1 CDS Hden_2211 NC_014313.1 2264747 2265148 R KEGG: nha:Nham_3495 hypothetical protein; hypothetical protein complement(2264747..2265148) Hyphomicrobium denitrificans ATCC 51888 9388114 YP_003756331.1 CDS Hden_2212 NC_014313.1 2265264 2265812 D KEGG: fal:FRAAL2692 hypothetical protein; hypothetical protein 2265264..2265812 Hyphomicrobium denitrificans ATCC 51888 9388115 YP_003756332.1 CDS Hden_2213 NC_014313.1 2265947 2266357 D KEGG: vpr:Vpar_0746 thioesterase superfamily protein; thioesterase superfamily protein 2265947..2266357 Hyphomicrobium denitrificans ATCC 51888 9388116 YP_003756333.1 CDS Hden_2214 NC_014313.1 2266440 2267603 D PFAM: conserved hypothetical protein; KEGG: bra:BRADO1469 hypothetical protein; hypothetical protein 2266440..2267603 Hyphomicrobium denitrificans ATCC 51888 9388117 YP_003756334.1 CDS Hden_2215 NC_014313.1 2267686 2268495 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mlo:mll1184 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(2267686..2268495) Hyphomicrobium denitrificans ATCC 51888 9388118 YP_003756335.1 CDS Hden_2216 NC_014313.1 2268687 2270135 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: rce:RC1_2026 deoxyribodipyrimidine photolyase family protein; DNA photolyase FAD-binding protein complement(2268687..2270135) Hyphomicrobium denitrificans ATCC 51888 9388119 YP_003756336.1 CDS Hden_2217 NC_014313.1 2270211 2271887 R KEGG: bhy:BHWA1_02529 TPR domain-containing protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(2270211..2271887) Hyphomicrobium denitrificans ATCC 51888 9388120 YP_003756337.1 CDS Hden_2218 NC_014313.1 2272059 2272613 D KEGG: smt:Smal_2560 hypothetical protein; hypothetical protein 2272059..2272613 Hyphomicrobium denitrificans ATCC 51888 9388121 YP_003756338.1 CDS Hden_2219 NC_014313.1 2272610 2274172 R KEGG: rpt:Rpal_3313 carbohydrate kinase, YjeF related protein; TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: YjeF-family domain protein; protein of unknown function UPF0031; carbohydrate kinase complement(2272610..2274172) Hyphomicrobium denitrificans ATCC 51888 9388122 YP_003756339.1 CDS Hden_2220 NC_014313.1 2274431 2274769 D PFAM: nitrogen regulatory protein P-II; KEGG: xau:Xaut_3586 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2274431..2274769 Hyphomicrobium denitrificans ATCC 51888 9388123 YP_003756340.1 CDS Hden_2221 NC_014313.1 2274860 2276269 D KEGG: avi:Avi_2375 glutamine synthetase; TIGRFAM: glutamine synthetase; PFAM: glutamine synthetase; glutamine synthetase beta-Grasp; glutamine synthetase 2274860..2276269 Hyphomicrobium denitrificans ATCC 51888 9388124 YP_003756341.1 CDS Hden_2222 NC_014313.1 2276346 2276651 R KEGG: cvi:CV_1735 ATP-binding/permease fusion ABC transporter; hypothetical protein complement(2276346..2276651) Hyphomicrobium denitrificans ATCC 51888 9388125 YP_003756342.1 CDS Hden_2223 NC_014313.1 2276741 2277925 R PFAM: major facilitator superfamily MFS_1; KEGG: mea:Mex_1p4860 permease of major facilitator transporter (tat pathway signal); major facilitator superfamily protein complement(2276741..2277925) Hyphomicrobium denitrificans ATCC 51888 9388126 YP_003756343.1 CDS Hden_2224 NC_014313.1 2277996 2279108 R PFAM: aminotransferase class I and II; KEGG: mlo:mll7737 histidinol-phosphate aminotransferase; class I and II aminotransferase complement(2277996..2279108) Hyphomicrobium denitrificans ATCC 51888 9388127 YP_003756344.1 CDS Hden_2225 NC_014313.1 2279128 2279565 R PFAM: conserved hypothetical protein; KEGG: ara:Arad_2494 hypothetical protein; hypothetical protein complement(2279128..2279565) Hyphomicrobium denitrificans ATCC 51888 9388128 YP_003756345.1 CDS Hden_2226 NC_014313.1 2279640 2280071 R KEGG: dol:Dole_1153 hypothetical protein; hypothetical protein complement(2279640..2280071) Hyphomicrobium denitrificans ATCC 51888 9388129 YP_003756346.1 CDS Hden_2227 NC_014313.1 2280280 2280786 D KEGG: mgr:MGG_03952 hypothetical protein; hypothetical protein 2280280..2280786 Hyphomicrobium denitrificans ATCC 51888 9388130 YP_003756347.1 CDS Hden_2228 NC_014313.1 2280884 2281375 D KEGG: rru:Rru_A2751 hypothetical protein; hypothetical protein 2280884..2281375 Hyphomicrobium denitrificans ATCC 51888 9388131 YP_003756348.1 CDS Hden_2229 NC_014313.1 2281388 2282086 D KEGG: act:ACLA_048030 hypothetical protein; hypothetical protein 2281388..2282086 Hyphomicrobium denitrificans ATCC 51888 9388132 YP_003756349.1 CDS Hden_2230 NC_014313.1 2282191 2283522 D KEGG: dsa:Desal_2391 hypothetical protein; hypothetical protein 2282191..2283522 Hyphomicrobium denitrificans ATCC 51888 9388133 YP_003756350.1 CDS Hden_2231 NC_014313.1 2283630 2284589 D KEGG: azc:AZC_0095 outer membrane lipoprotein-sorting protein; hypothetical protein 2283630..2284589 Hyphomicrobium denitrificans ATCC 51888 9388134 YP_003756351.1 CDS Hden_2232 NC_014313.1 2284586 2285047 R PFAM: GCN5-related N-acetyltransferase; KEGG: pmy:Pmen_0132 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2284586..2285047) Hyphomicrobium denitrificans ATCC 51888 9388135 YP_003756352.1 CDS Hden_2233 NC_014313.1 2285294 2286358 D PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase; polysaccharide deacetylase 2285294..2286358 Hyphomicrobium denitrificans ATCC 51888 9388136 YP_003756353.1 CDS Hden_2234 NC_014313.1 2286934 2287662 D TIGRFAM: lipoate-protein ligase B; KEGG: xau:Xaut_4082 lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; lipoate-protein ligase B 2286934..2287662 Hyphomicrobium denitrificans ATCC 51888 9388138 YP_003756354.1 CDS Hden_2235 NC_014313.1 2287748 2288122 R KEGG: sme:SMc04174 signal peptide protein; hypothetical protein complement(2287748..2288122) Hyphomicrobium denitrificans ATCC 51888 9388139 YP_003756355.1 CDS Hden_2236 NC_014313.1 2288373 2289221 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mag:amb4341 transcriptional regulator; LysR family transcriptional regulator 2288373..2289221 Hyphomicrobium denitrificans ATCC 51888 9388140 YP_003756356.1 CDS Hden_2237 NC_014313.1 2289356 2291374 R KEGG: bra:BRADO3249 acyl-CoA carboxylase biotin-carrying subunit; alpha chain; PFAM: carbamoyl-phosphate synthase L chain ATP-binding; biotin carboxylase domain protein; carbamoyl-phosphate synthetase large chain domain protein; biotin/lipoyl attachment domain-containing protein; SMART: biotin carboxylase domain protein; carbamoyl-phosphate synthase L chain ATP-binding protein complement(2289356..2291374) Hyphomicrobium denitrificans ATCC 51888 9388141 YP_003756357.1 CDS Hden_2238 NC_014313.1 2291574 2292584 R KEGG: mlo:mll0880 hypothetical protein; hypothetical protein complement(2291574..2292584) Hyphomicrobium denitrificans ATCC 51888 9388142 YP_003756358.1 CDS Hden_2239 NC_014313.1 2293184 2293903 R KEGG: mdi:METDI1533 DNA repair protein RecO; TIGRFAM: DNA repair protein RecO; PFAM: recombination protein O RecO; DNA repair protein RecO complement(2293184..2293903) Hyphomicrobium denitrificans ATCC 51888 9388143 YP_003756359.1 CDS Hden_2240 NC_014313.1 2293953 2294891 R KEGG: bcs:BCAN_A0676 GTP-binding protein Era; TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; GTP-binding protein Era complement(2293953..2294891) Hyphomicrobium denitrificans ATCC 51888 9388144 YP_003756360.1 CDS Hden_2241 NC_014313.1 2294878 2295585 R SMART: ribonuclease III; double-stranded RNA binding domain protein; TIGRFAM: ribonuclease III; KEGG: mrd:Mrad2831_3455 ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III complement(2294878..2295585) Hyphomicrobium denitrificans ATCC 51888 9388145 YP_003756361.1 CDS Hden_2242 NC_014313.1 2295606 2296373 R TIGRFAM: signal peptidase I; KEGG: xau:Xaut_3880 signal peptidase I; PFAM: peptidase S24/S26A/S26B, conserved region; signal peptidase I complement(2295606..2296373) Hyphomicrobium denitrificans ATCC 51888 9388146 YP_003756362.1 CDS Hden_2243 NC_014313.1 2296572 2296985 R KEGG: bid:Bind_2443 holo-acyl-carrier-protein synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-acyl-carrier-protein synthase complement(2296572..2296985) Hyphomicrobium denitrificans ATCC 51888 9388147 YP_003756363.1 CDS Hden_2244 NC_014313.1 2296982 2297800 R TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; KEGG: pla:Plav_2871 pyridoxine 5'-phosphate synthase; PFAM: pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ complement(2296982..2297800) Hyphomicrobium denitrificans ATCC 51888 9388148 YP_003756364.1 CDS Hden_2245 NC_014313.1 2297848 2298414 R PFAM: protein of unknown function DUF2062; KEGG: pla:Plav_2870 hypothetical protein; hypothetical protein complement(2297848..2298414) Hyphomicrobium denitrificans ATCC 51888 9388149 YP_003756365.1 CDS Hden_2246 NC_014313.1 2298468 2300687 R SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: RelA/SpoT family protein; KEGG: xau:Xaut_3877 (p)ppGpp synthetase I, SpoT/RelA; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; (p)ppGpp synthetase I SpoT/RelA complement(2298468..2300687) Hyphomicrobium denitrificans ATCC 51888 9388150 YP_003756366.1 CDS Hden_2247 NC_014313.1 2300791 2301249 R KEGG: bid:Bind_2446 DNA-directed RNA polymerase subunit omega; TIGRFAM: DNA-directed RNA polymerase subunit omega; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega complement(2300791..2301249) Hyphomicrobium denitrificans ATCC 51888 9388151 YP_003756367.1 CDS Hden_2248 NC_014313.1 2301632 2302273 D PFAM: protein of unknown function DUF88; KEGG: rru:Rru_A1859 hypothetical protein; hypothetical protein 2301632..2302273 Hyphomicrobium denitrificans ATCC 51888 9388152 YP_003756368.1 CDS Hden_2249 NC_014313.1 2302305 2302964 D PFAM: uracil-DNA glycosylase superfamily; KEGG: pla:Plav_2864 uracil-DNA glycosylase superfamily protein; uracil-DNA glycosylase superfamily protein 2302305..2302964 Hyphomicrobium denitrificans ATCC 51888 9388153 YP_003756369.1 CDS Hden_2250 NC_014313.1 2302945 2303514 R PFAM: redoxin; KEGG: rxy:Rxyl_1080 redoxin; redoxin complement(2302945..2303514) Hyphomicrobium denitrificans ATCC 51888 9388154 YP_003756370.1 CDS Hden_2251 NC_014313.1 2303518 2303991 R KEGG: smpB; SsrA-binding protein; TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; SsrA-binding protein complement(2303518..2303991) Hyphomicrobium denitrificans ATCC 51888 9388155 YP_003756371.1 CDS Hden_2252 NC_014313.1 2304016 2304906 R KEGG: met:M446_0697 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(2304016..2304906) Hyphomicrobium denitrificans ATCC 51888 9388156 YP_003756372.1 CDS Hden_2253 NC_014313.1 2305191 2307410 D PFAM: lytic transglycosylase catalytic; KEGG: met:M446_0698 lytic transglycosylase catalytic; lytic transglycosylase 2305191..2307410 Hyphomicrobium denitrificans ATCC 51888 9388157 YP_003756373.1 CDS Hden_2254 NC_014313.1 2307450 2308439 D PFAM: alpha/beta hydrolase fold; KEGG: pla:Plav_2860 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2307450..2308439 Hyphomicrobium denitrificans ATCC 51888 9388158 YP_003756374.1 CDS Hden_2255 NC_014313.1 2308379 2310379 R KEGG: jan:Jann_1177 hypothetical protein; hypothetical protein complement(2308379..2310379) Hyphomicrobium denitrificans ATCC 51888 9388159 YP_003756375.1 CDS Hden_2256 NC_014313.1 2310435 2310527 R hypothetical protein complement(2310435..2310527) Hyphomicrobium denitrificans ATCC 51888 9388160 YP_003756376.1 CDS Hden_2257 NC_014313.1 2310558 2312708 R PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein complement(2310558..2312708) Hyphomicrobium denitrificans ATCC 51888 9388161 YP_003756377.1 CDS Hden_2258 NC_014313.1 2313018 2314079 R TIGRFAM: siroheme synthase; KEGG: azc:AZC_0234 uroporphyrin-III C-methyltransferase; siroheme synthase complement(2313018..2314079) Hyphomicrobium denitrificans ATCC 51888 9388162 YP_003756378.1 CDS Hden_2259 NC_014313.1 2314223 2315980 R KEGG: msl:Msil_1406 glucose/sorbosone dehydrogenase-like protein; glucose/sorbosone dehydrogenase complement(2314223..2315980) Hyphomicrobium denitrificans ATCC 51888 9388163 YP_003756379.1 CDS Hden_2260 NC_014313.1 2316029 2316961 R KEGG: mch:Mchl_5509 hypothetical protein; hypothetical protein complement(2316029..2316961) Hyphomicrobium denitrificans ATCC 51888 9388164 YP_003756380.1 CDS Hden_2261 NC_014313.1 2317312 2317593 D KEGG: mrd:Mrad2831_0982 transmembrane protein; transmembrane protein 2317312..2317593 Hyphomicrobium denitrificans ATCC 51888 9388165 YP_003756381.1 CDS Hden_2262 NC_014313.1 2317670 2317909 R hypothetical protein complement(2317670..2317909) Hyphomicrobium denitrificans ATCC 51888 9388166 YP_003756382.1 CDS Hden_2263 NC_014313.1 2318214 2318411 D PFAM: CsbD family protein; KEGG: rpb:RPB_1394 CsbD-like; CsbD family protein 2318214..2318411 Hyphomicrobium denitrificans ATCC 51888 9388167 YP_003756383.1 CDS Hden_2264 NC_014313.1 2318544 2318912 D KEGG: rci:RCIX2708 FAD-dependent oxidoreductase; hypothetical protein 2318544..2318912 Hyphomicrobium denitrificans ATCC 51888 9388168 YP_003756384.1 CDS Hden_2265 NC_014313.1 2319403 2319603 D KEGG: hmg:100202525 similar to predicted protein; hypothetical protein 2319403..2319603 Hyphomicrobium denitrificans ATCC 51888 9388169 YP_003756385.1 CDS Hden_2266 NC_014313.1 2319628 2319906 D KEGG: mgr:MGG_08642 hypothetical protein; hypothetical protein 2319628..2319906 Hyphomicrobium denitrificans ATCC 51888 9388170 YP_003756386.1 CDS Hden_2267 NC_014313.1 2319947 2320066 R hypothetical protein complement(2319947..2320066) Hyphomicrobium denitrificans ATCC 51888 9388171 YP_003756387.1 CDS Hden_2268 NC_014313.1 2320630 2321556 D PFAM: secretion protein HlyD; KEGG: spl:Spea_2191 secretion protein HlyD; secretion protein HlyD 2320630..2321556 Hyphomicrobium denitrificans ATCC 51888 9388172 YP_003756388.1 CDS Hden_2269 NC_014313.1 2321543 2323066 D KEGG: spl:Spea_2190 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter 2321543..2323066 Hyphomicrobium denitrificans ATCC 51888 9388173 YP_003756389.1 CDS Hden_2270 NC_014313.1 2323063 2323497 R KEGG: azc:AZC_0972 response regulator receiver; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(2323063..2323497) Hyphomicrobium denitrificans ATCC 51888 9388174 YP_003756390.1 CDS Hden_2271 NC_014313.1 2323505 2323924 R KEGG: msl:Msil_0850 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(2323505..2323924) Hyphomicrobium denitrificans ATCC 51888 9388175 YP_003756391.1 CDS Hden_2272 NC_014313.1 2324075 2324542 R KEGG: nha:Nham_2813 hypothetical protein; hypothetical protein complement(2324075..2324542) Hyphomicrobium denitrificans ATCC 51888 9388176 YP_003756392.1 CDS Hden_2273 NC_014313.1 2324670 2325377 D KEGG: nwi:Nwi_2417 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; Crp/Fnr family transcriptional regulator 2324670..2325377 Hyphomicrobium denitrificans ATCC 51888 9388177 YP_003756393.1 CDS Hden_2274 NC_014313.1 2325487 2326671 D PFAM: NnrS family protein; KEGG: nha:Nham_0648 NnrS; NnrS family protein 2325487..2326671 Hyphomicrobium denitrificans ATCC 51888 9388178 YP_003756394.1 CDS Hden_2275 NC_014313.1 2326682 2326951 R KEGG: stp:Strop_1886 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha complement(2326682..2326951) Hyphomicrobium denitrificans ATCC 51888 9388179 YP_003756395.1 CDS Hden_2276 NC_014313.1 2326999 2327478 D KEGG: mag:amb0011 hypothetical protein; TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; ybaK/ebsC protein 2326999..2327478 Hyphomicrobium denitrificans ATCC 51888 9388180 YP_003756396.1 CDS Hden_2277 NC_014313.1 2327519 2327848 R KEGG: ace:Acel_2081 major facilitator transporter; hypothetical protein complement(2327519..2327848) Hyphomicrobium denitrificans ATCC 51888 9388181 YP_003756397.1 CDS Hden_2278 NC_014313.1 2328075 2328569 R KEGG: bmr:BMI_II610 nucleoside diphosphate kinase regulator; GreA/GreB family elongation factor complement(2328075..2328569) Hyphomicrobium denitrificans ATCC 51888 9388182 YP_003756398.1 CDS Hden_2279 NC_014313.1 2328858 2330324 R PFAM: AMP-dependent synthetase and ligase; KEGG: cce:Ccel_0875 coenzyme F390 synthetase-like protein; AMP-dependent synthetase and ligase complement(2328858..2330324) Hyphomicrobium denitrificans ATCC 51888 9388183 YP_003756399.1 CDS Hden_2280 NC_014313.1 2330712 2330855 D hypothetical protein 2330712..2330855 Hyphomicrobium denitrificans ATCC 51888 9388184 YP_003756400.1 CDS Hden_2281 NC_014313.1 2330932 2331468 D SMART: metal-dependent phosphohydrolase HD region; KEGG: tkm:TK90_2611 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2330932..2331468 Hyphomicrobium denitrificans ATCC 51888 9388185 YP_003756401.1 CDS Hden_2282 NC_014313.1 2331636 2332352 D PFAM: protein of unknown function DUF374; KEGG: mes:Meso_0437 hypothetical protein; hypothetical protein 2331636..2332352 Hyphomicrobium denitrificans ATCC 51888 9388186 YP_003756402.1 CDS Hden_2283 NC_014313.1 2332378 2333631 R KEGG: rpa:RPA3082 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase complement(2332378..2333631) Hyphomicrobium denitrificans ATCC 51888 9388187 YP_003756403.1 CDS Hden_2285 NC_014313.1 2334166 2335686 R PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0424 glycosyl transferase; family 2 glycosyl transferase complement(2334166..2335686) Hyphomicrobium denitrificans ATCC 51888 9388189 YP_003756404.1 CDS Hden_2286 NC_014313.1 2335820 2336677 D KEGG: rpc:RPC_0729 extracellular solute-binding protein; PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; family 3 extracellular solute-binding protein 2335820..2336677 Hyphomicrobium denitrificans ATCC 51888 9388190 YP_003756405.1 CDS Hden_2287 NC_014313.1 2336770 2338140 D PFAM: glycoside hydrolase; KEGG: mag:amb1842 beta-glucosidase-related glycosidase; glycoside hydrolase 2336770..2338140 Hyphomicrobium denitrificans ATCC 51888 9388191 YP_003756406.1 CDS Hden_2288 NC_014313.1 2338247 2338561 D KEGG: nml:Namu_1492 chloride channel core; chloride channel core 2338247..2338561 Hyphomicrobium denitrificans ATCC 51888 9388192 YP_003756407.1 CDS Hden_2289 NC_014313.1 2338619 2339443 D PFAM: intradiol ring-cleavage dioxygenase; KEGG: mes:Meso_2843 intradiol ring-cleavage dioxygenase; intradiol ring-cleavage dioxygenase 2338619..2339443 Hyphomicrobium denitrificans ATCC 51888 9388193 YP_003756408.1 CDS Hden_2290 NC_014313.1 2339550 2339678 D hypothetical protein 2339550..2339678 Hyphomicrobium denitrificans ATCC 51888 9388194 YP_003756409.1 CDS Hden_2291 NC_014313.1 2339931 2340305 R PFAM: excinuclease ABC C subunit domain protein; KEGG: vvy:VV0371 endonuclease; excinuclease ABC C subunit domain-containing protein complement(2339931..2340305) Hyphomicrobium denitrificans ATCC 51888 9388195 YP_003756410.1 CDS Hden_2292 NC_014313.1 2340520 2341560 R KEGG: nwi:Nwi_1402 hypothetical protein; hypothetical protein complement(2340520..2341560) Hyphomicrobium denitrificans ATCC 51888 9388196 YP_003756411.1 CDS Hden_2293 NC_014313.1 2341637 2342539 R PFAM: formate/nitrite transporter; KEGG: pap:PSPA7_2455 formate/nitrate transporter; formate/nitrite transporter complement(2341637..2342539) Hyphomicrobium denitrificans ATCC 51888 9388197 YP_003756412.1 CDS Hden_2294 NC_014313.1 2342539 2343213 R KEGG: sil:SPOA0173 hypothetical protein; hypothetical protein complement(2342539..2343213) Hyphomicrobium denitrificans ATCC 51888 9388198 YP_003756413.1 CDS Hden_2295 NC_014313.1 2343293 2345089 R PFAM: glycosyl transferase family 39; KEGG: met:M446_5864 glycosyl transferase; glycosyl transferase family 39 complement(2343293..2345089) Hyphomicrobium denitrificans ATCC 51888 9388199 YP_003756414.1 CDS Hden_2296 NC_014313.1 2345175 2345753 D TIGRFAM: orotate phosphoribosyltransferase; KEGG: rpd:RPD_0955 orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 2345175..2345753 Hyphomicrobium denitrificans ATCC 51888 9388200 YP_003756415.1 CDS Hden_2297 NC_014313.1 2345923 2346594 R KEGG: bbt:BBta_2303 carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; carboxymethylenebutenolidase complement(2345923..2346594) Hyphomicrobium denitrificans ATCC 51888 9388201 YP_003756416.1 CDS Hden_2298 NC_014313.1 2346744 2348336 R KEGG: azc:AZC_4063 phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase (ATP) complement(2346744..2348336) Hyphomicrobium denitrificans ATCC 51888 9388202 YP_003756417.1 CDS Hden_2299 NC_014313.1 2348798 2349502 D KEGG: msl:Msil_0255 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator 2348798..2349502 Hyphomicrobium denitrificans ATCC 51888 9388203 YP_003756418.1 CDS Hden_2300 NC_014313.1 2349531 2351369 D KEGG: azc:AZC_4066 histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2349531..2351369 Hyphomicrobium denitrificans ATCC 51888 9388204 YP_003756419.1 CDS Hden_2301 NC_014313.1 2351353 2351841 D KEGG: rce:RC1_2867 HPr kinase; HPr kinase 2351353..2351841 Hyphomicrobium denitrificans ATCC 51888 9388205 YP_003756420.1 CDS Hden_2302 NC_014313.1 2351948 2352349 D PFAM: PTS system fructose subfamily IIA component; KEGG: xau:Xaut_2848 PTS system fructose subfamily IIA component; PTS system fructose subfamily IIA component 2351948..2352349 Hyphomicrobium denitrificans ATCC 51888 9388206 YP_003756421.1 CDS Hden_2303 NC_014313.1 2352364 2352669 D KEGG: rru:Rru_A3446 HPrNtr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; phosphotransferase system, phosphocarrier protein HPr 2352364..2352669 Hyphomicrobium denitrificans ATCC 51888 9388207 YP_003756422.1 CDS Hden_2304 NC_014313.1 2352748 2354148 R KEGG: TadE family protein; PFAM: von Willebrand factor A; SMART: von Willebrand factor A; von Willebrand factor A complement(2352748..2354148) Hyphomicrobium denitrificans ATCC 51888 9388208 YP_003756423.1 CDS Hden_2305 NC_014313.1 2354562 2355971 D TIGRFAM: adenosylhomocysteinase; KEGG: bbt:BBta_5698 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 2354562..2355971 Hyphomicrobium denitrificans ATCC 51888 9388209 YP_003756424.1 CDS Hden_2306 NC_014313.1 2356244 2358754 D KEGG: oca:OCAR_4487 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; multi-sensor signal transduction histidine kinase 2356244..2358754 Hyphomicrobium denitrificans ATCC 51888 9388210 YP_003756425.1 CDS Hden_2307 NC_014313.1 2358767 2360308 D PFAM: protein of unknown function UPF0079; aminoglycoside phosphotransferase; KEGG: rpt:Rpal_0081 protein of unknown function UPF0079; hypothetical protein 2358767..2360308 Hyphomicrobium denitrificans ATCC 51888 9388211 YP_003756426.1 CDS Hden_2308 NC_014313.1 2360331 2361086 D PFAM: nucleotidyl transferase; KEGG: bbt:BBta_0088 nucleotidyl transferase family protein; nucleotidyl transferase 2360331..2361086 Hyphomicrobium denitrificans ATCC 51888 9388212 YP_003756427.1 CDS Hden_2309 NC_014313.1 2361086 2364202 D TIGRFAM: double-strand break repair protein AddB; KEGG: azl:AZL_027200 double-strand break repair protein; double-strand break repair protein AddB 2361086..2364202 Hyphomicrobium denitrificans ATCC 51888 9388213 YP_003756428.1 CDS Hden_2310 NC_014313.1 2364199 2367789 D KEGG: pla:Plav_0138 double-strand break repair helicase AddA; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; double-strand break repair helicase AddA 2364199..2367789 Hyphomicrobium denitrificans ATCC 51888 9388214 YP_003756429.1 CDS Hden_2311 NC_014313.1 2367889 2368221 D KEGG: rak:A1C_00010 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain; thioredoxin 2367889..2368221 Hyphomicrobium denitrificans ATCC 51888 9388215 YP_003756430.1 CDS Hden_2312 NC_014313.1 2368307 2368906 R PFAM: isochorismatase hydrolase; KEGG: mfa:Mfla_2540 isochorismatase hydrolase; isochorismatase hydrolase complement(2368307..2368906) Hyphomicrobium denitrificans ATCC 51888 9388216 YP_003756431.1 CDS Hden_2313 NC_014313.1 2368956 2369384 R PFAM: protein of unknown function DUF779; KEGG: hau:Haur_1158 hypothetical protein; hypothetical protein complement(2368956..2369384) Hyphomicrobium denitrificans ATCC 51888 9388217 YP_003756432.1 CDS Hden_2314 NC_014313.1 2369461 2369835 R PFAM: protein of unknown function DUF779; KEGG: azl:AZL_d02860 hypothetical protein; hypothetical protein complement(2369461..2369835) Hyphomicrobium denitrificans ATCC 51888 9388218 YP_003756433.1 CDS Hden_2315 NC_014313.1 2369965 2371485 R PFAM: aldehyde dehydrogenase; KEGG: sjp:SJA_C2-05820 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2369965..2371485) Hyphomicrobium denitrificans ATCC 51888 9388219 YP_003756434.1 CDS Hden_2316 NC_014313.1 2371701 2373050 R TIGRFAM: FolC bifunctional protein; KEGG: pla:Plav_0140 FolC bifunctional protein; PFAM: Mur ligase middle domain protein; FolC bifunctional protein complement(2371701..2373050) Hyphomicrobium denitrificans ATCC 51888 9388220 YP_003756435.1 CDS Hden_2317 NC_014313.1 2373090 2374172 R KEGG: azc:AZC_1024 acetyl-CoA carboxylase carboxyl transferase subunit beta; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase subunit beta; PFAM: carboxyl transferase; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(2373090..2374172) Hyphomicrobium denitrificans ATCC 51888 9388221 YP_003756436.1 CDS Hden_2318 NC_014313.1 2374356 2375186 R TIGRFAM: tryptophan synthase, subunit alpha; KEGG: azc:AZC_1020 tryptophan synthase subunit alpha; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha complement(2374356..2375186) Hyphomicrobium denitrificans ATCC 51888 9388222 YP_003756437.1 CDS Hden_2319 NC_014313.1 2375187 2376428 R KEGG: atc:AGR_C_28 tryptophan synthase beta chain; TIGRFAM: tryptophan synthase subunit beta; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; tryptophan synthase subunit beta complement(2375187..2376428) Hyphomicrobium denitrificans ATCC 51888 9388223 YP_003756438.1 CDS Hden_2320 NC_014313.1 2376464 2377114 R KEGG: bja:blr0744 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase complement(2376464..2377114) Hyphomicrobium denitrificans ATCC 51888 9388224 YP_003756439.1 CDS Hden_2321 NC_014313.1 2377125 2377364 R KEGG: rpc:RPC_2258 hypothetical protein; hypothetical protein complement(2377125..2377364) Hyphomicrobium denitrificans ATCC 51888 9388225 YP_003756440.1 CDS Hden_2322 NC_014313.1 2377380 2377730 R KEGG: rec:RHECIAT_CH0000440 hypothetical protein; hypothetical protein complement(2377380..2377730) Hyphomicrobium denitrificans ATCC 51888 9388226 YP_003756441.1 CDS Hden_2323 NC_014313.1 2377760 2378059 R TIGRFAM: integration host factor subunit beta; PFAM: histone family protein DNA-binding protein; KEGG: rpt:Rpal_0069 integration host factor subunit beta; SMART: histone family protein DNA-binding protein; integration host factor subunit beta complement(2377760..2378059) Hyphomicrobium denitrificans ATCC 51888 9388227 YP_003756442.1 CDS Hden_2324 NC_014313.1 2378093 2379058 R KEGG: mes:Meso_3671 signal peptide peptidase A; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type complement(2378093..2379058) Hyphomicrobium denitrificans ATCC 51888 9388228 YP_003756443.1 CDS Hden_2325 NC_014313.1 2379249 2380967 R KEGG: bmr:BMI_I28 30S ribosomal protein S1; TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; 30S ribosomal protein S1 complement(2379249..2380967) Hyphomicrobium denitrificans ATCC 51888 9388229 YP_003756444.1 CDS Hden_2326 NC_014313.1 2381265 2382380 R KEGG: mlo:mlr4654 hypothetical protein; hypothetical protein complement(2381265..2382380) Hyphomicrobium denitrificans ATCC 51888 9388230 YP_003756445.1 CDS Hden_2327 NC_014313.1 2382937 2383200 D KEGG: bja:bll0561 hypothetical protein; hypothetical protein 2382937..2383200 Hyphomicrobium denitrificans ATCC 51888 9388231 YP_003756446.1 CDS Hden_2328 NC_014313.1 2383236 2383877 R TIGRFAM: cytidylate kinase; KEGG: mno:Mnod_7108 cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(2383236..2383877) Hyphomicrobium denitrificans ATCC 51888 9388232 YP_003756447.1 CDS Hden_2329 NC_014313.1 2383874 2385214 R KEGG: msl:Msil_0615 3-phosphoshikimate 1-carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase complement(2383874..2385214) Hyphomicrobium denitrificans ATCC 51888 9388233 YP_003756448.1 CDS Hden_2330 NC_014313.1 2385434 2385811 D PFAM: conserved hypothetical protein; KEGG: met:M446_6550 hypothetical protein; hypothetical protein 2385434..2385811 Hyphomicrobium denitrificans ATCC 51888 9388234 YP_003756449.1 CDS Hden_2331 NC_014313.1 2386125 2386364 D PFAM: excinuclease ABC C subunit domain protein; KEGG: rle:RL0110 hypothetical protein; excinuclease ABC C subunit domain-containing protein 2386125..2386364 Hyphomicrobium denitrificans ATCC 51888 9388236 YP_003756450.1 CDS Hden_2332 NC_014313.1 2386493 2388544 D PFAM: carbon starvation protein CstA; KEGG: rpd:RPD_1551 carbon starvation protein CstA; carbon starvation protein CstA 2386493..2388544 Hyphomicrobium denitrificans ATCC 51888 9388237 YP_003756451.1 CDS Hden_2333 NC_014313.1 2388548 2388763 D PFAM: protein of unknown function DUF466; KEGG: aav:Aave_4227 hypothetical protein; hypothetical protein 2388548..2388763 Hyphomicrobium denitrificans ATCC 51888 9388238 YP_003756452.1 CDS Hden_2334 NC_014313.1 2388836 2390659 D KEGG: oca:OCAR_6476 holdfast attachment protein C (protein HfaC); PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter 2388836..2390659 Hyphomicrobium denitrificans ATCC 51888 9388239 YP_003756453.1 CDS Hden_2335 NC_014313.1 2390985 2391656 R KEGG: rer:RER_53650 oxidase; hypothetical protein complement(2390985..2391656) Hyphomicrobium denitrificans ATCC 51888 9388240 YP_003756454.1 CDS Hden_2336 NC_014313.1 2391904 2392350 D PFAM: heat shock protein Hsp20; KEGG: bid:Bind_0512 heat shock protein HSP20; heat shock protein Hsp20 2391904..2392350 Hyphomicrobium denitrificans ATCC 51888 9388241 YP_003756455.1 CDS Hden_2337 NC_014313.1 2392491 2392775 D PFAM: protein of unknown function DUF1150; KEGG: azc:AZC_0347 hypothetical protein; hypothetical protein 2392491..2392775 Hyphomicrobium denitrificans ATCC 51888 9388242 YP_003756456.1 CDS Hden_2338 NC_014313.1 2392857 2393831 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: azc:AZC_1016 NAD dependent epimerase; NAD-dependent epimerase/dehydratase complement(2392857..2393831) Hyphomicrobium denitrificans ATCC 51888 9388243 YP_003756457.1 CDS Hden_2339 NC_014313.1 2394371 2394718 D KEGG: har:HEAR3303 ArsR regulator operon ArsI; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator 2394371..2394718 Hyphomicrobium denitrificans ATCC 51888 9388245 YP_003756458.1 CDS Hden_2340 NC_014313.1 2394715 2395236 D KEGG: mag:amb1828 protein-tyrosine-phosphatase; PFAM: protein-tyrosine phosphatase, low molecular weight; SMART: protein-tyrosine phosphatase, low molecular weight; protein-tyrosine phosphatase, low molecular weight 2394715..2395236 Hyphomicrobium denitrificans ATCC 51888 9388246 YP_003756459.1 CDS Hden_2341 NC_014313.1 2395239 2396303 D KEGG: oca:OCAR_4230 arsenic resistance protein; TIGRFAM: arsenic resistance protein; PFAM: sodium symporter; arsenic resistance protein 2395239..2396303 Hyphomicrobium denitrificans ATCC 51888 9388247 YP_003756460.1 CDS Hden_2342 NC_014313.1 2396307 2396723 D KEGG: mlo:mll2167 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase; arsenate reductase 2396307..2396723 Hyphomicrobium denitrificans ATCC 51888 9388248 YP_003756461.1 CDS Hden_2343 NC_014313.1 2396720 2397454 D KEGG: oca:OCAR_4229 arsenical resistance protein ArsH; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase; arsenical resistance protein ArsH 2396720..2397454 Hyphomicrobium denitrificans ATCC 51888 9388249 YP_003756462.1 CDS Hden_2344 NC_014313.1 2397476 2398783 R PFAM: major facilitator superfamily MFS_1; KEGG: gdi:GDI_0334 major facilitator transporter; major facilitator superfamily protein complement(2397476..2398783) Hyphomicrobium denitrificans ATCC 51888 9388250 YP_003756463.1 CDS Hden_2345 NC_014313.1 2398937 2402125 R KEGG: app:CAP2UW1_2548 delta-1-pyrroline-5-carboxylate dehydrogenase; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase complement(2398937..2402125) Hyphomicrobium denitrificans ATCC 51888 9388251 YP_003756464.1 CDS Hden_2346 NC_014313.1 2402306 2403166 D manually curated; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; KEGG: azc:AZC_1589 pantoate-beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase 2402306..2403166 Hyphomicrobium denitrificans ATCC 51888 9388252 YP_003756465.1 CDS Hden_2347 NC_014313.1 2403338 2405347 D SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; TIGRFAM: DNA topoisomerase IV subunit beta; KEGG: mes:Meso_1015 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase type IIsubunit alpha B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; DNA topoisomerase IV subunit beta 2403338..2405347 Hyphomicrobium denitrificans ATCC 51888 9388253 YP_003756466.1 CDS Hden_2348 NC_014313.1 2405437 2406834 R PFAM: fatty acid desaturase; KEGG: sal:Sala_0465 fatty acid desaturase; fatty acid desaturase complement(2405437..2406834) Hyphomicrobium denitrificans ATCC 51888 9388254 YP_003756467.1 CDS Hden_2349 NC_014313.1 2407144 2407815 D PFAM: major intrinsic protein; KEGG: spe:Spro_1009 aquaporin Z; major intrinsic protein 2407144..2407815 Hyphomicrobium denitrificans ATCC 51888 9388255 YP_003756468.1 CDS Hden_2350 NC_014313.1 2408150 2409772 D KEGG: mrd:Mrad2831_0999 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase; helicase; SMART: DEAD-like helicase ; helicase; DEAD/DEAH box helicase 2408150..2409772 Hyphomicrobium denitrificans ATCC 51888 9388256 YP_003756469.1 CDS Hden_2351 NC_014313.1 2409979 2410251 D KEGG: tgu:100190018 evectin-2 pleckstrin homology domain containing family B member 2-like; hypothetical protein 2409979..2410251 Hyphomicrobium denitrificans ATCC 51888 9388257 YP_003756470.1 CDS Hden_2352 NC_014313.1 2410346 2410738 R KEGG: azc:AZC_3609 HesB protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein complement(2410346..2410738) Hyphomicrobium denitrificans ATCC 51888 9388258 YP_003756471.1 CDS Hden_2353 NC_014313.1 2410802 2411263 R KEGG: mpo:Mpop_4461 FeS assembly SUF system protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59; FeS assembly SUF system protein complement(2410802..2411263) Hyphomicrobium denitrificans ATCC 51888 9388259 YP_003756472.1 CDS Hden_2354 NC_014313.1 2411276 2412559 R KEGG: mes:Meso_1778 SufS subfamily cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SufS subfamily cysteine desulfurase complement(2411276..2412559) Hyphomicrobium denitrificans ATCC 51888 9388260 YP_003756473.1 CDS Hden_2355 NC_014313.1 2412568 2413902 R KEGG: nha:Nham_2326 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; FeS assembly protein SufD complement(2412568..2413902) Hyphomicrobium denitrificans ATCC 51888 9388261 YP_003756474.1 CDS Hden_2356 NC_014313.1 2413904 2414659 R TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: pde:Pden_3966 FeS assembly ATPase SufC; SMART: ATPase AAA; FeS assembly ATPase SufC complement(2413904..2414659) Hyphomicrobium denitrificans ATCC 51888 9388262 YP_003756475.1 CDS Hden_2357 NC_014313.1 2414715 2414975 R KEGG: gdj:Gdia_0591 hypothetical protein; hypothetical protein complement(2414715..2414975) Hyphomicrobium denitrificans ATCC 51888 9388263 YP_003756476.1 CDS Hden_2358 NC_014313.1 2414979 2416448 R KEGG: atc:AGR_C_3348 ABC transporter membrane protein XF1476; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; FeS assembly protein SufB complement(2414979..2416448) Hyphomicrobium denitrificans ATCC 51888 9388264 YP_003756477.1 CDS Hden_2359 NC_014313.1 2416504 2418075 R TIGRFAM: Rrf2 family transcriptional regulator; KEGG: rce:RC1_1616 cysteine desulfurase; PFAM: aminotransferase class V; protein of unknown function UPF0074; Rrf2 family transcriptional regulator complement(2416504..2418075) Hyphomicrobium denitrificans ATCC 51888 9388265 YP_003756478.1 CDS Hden_2360 NC_014313.1 2418342 2419127 D PFAM: peptidase S15; KEGG: bid:Bind_0096 hypothetical protein; peptidase S15 2418342..2419127 Hyphomicrobium denitrificans ATCC 51888 9388266 YP_003756479.1 CDS Hden_2361 NC_014313.1 2419155 2420294 R PFAM: protein of unknown function UPF0075; KEGG: azc:AZC_3618 anhydro-N-acetylmuramic acid kinase; hypothetical protein complement(2419155..2420294) Hyphomicrobium denitrificans ATCC 51888 9388267 YP_003756480.1 CDS Hden_2362 NC_014313.1 2420352 2421608 D SMART: RNA-binding S4 domain protein; TIGRFAM: tyrosyl-tRNA synthetase; KEGG: rpc:RPC_2845 tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tyrosyl-tRNA synthetase 2420352..2421608 Hyphomicrobium denitrificans ATCC 51888 9388268 YP_003756481.1 CDS Hden_2363 NC_014313.1 2421631 2425299 R KEGG: pla:Plav_3269 hypothetical protein; hypothetical protein complement(2421631..2425299) Hyphomicrobium denitrificans ATCC 51888 9388269 YP_003756482.1 CDS Hden_2364 NC_014313.1 2425613 2426080 D PFAM: alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen; KEGG: sme:SMc00524 bacterioferritin comigratory protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2425613..2426080 Hyphomicrobium denitrificans ATCC 51888 9388270 YP_003756483.1 CDS Hden_2365 NC_014313.1 2426288 2426806 D PFAM: protein of unknown function DUF583; KEGG: pla:Plav_3273 hypothetical protein; hypothetical protein 2426288..2426806 Hyphomicrobium denitrificans ATCC 51888 9388271 YP_003756484.1 CDS Hden_2366 NC_014313.1 2426880 2427416 R PFAM: GCN5-related N-acetyltransferase; KEGG: azl:AZL_019520 acetyltransferase; GCN5-like N-acetyltransferase complement(2426880..2427416) Hyphomicrobium denitrificans ATCC 51888 9388272 YP_003756485.1 CDS Hden_2367 NC_014313.1 2427468 2427881 R KEGG: lch:Lcho_0747 outer membrane adhesin like proteiin; outer membrane adhesin-like protein complement(2427468..2427881) Hyphomicrobium denitrificans ATCC 51888 9388273 YP_003756486.1 CDS Hden_2368 NC_014313.1 2428013 2428657 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: tkm:TK90_2079 multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein complement(2428013..2428657) Hyphomicrobium denitrificans ATCC 51888 9388274 YP_003756487.1 CDS Hden_2369 NC_014313.1 2428816 2429103 D PFAM: Usg family protein; KEGG: pzu:PHZ_c3229 usg protein, probable subunit of phosphoribosylanthranilate isomerase; Usg family protein 2428816..2429103 Hyphomicrobium denitrificans ATCC 51888 9388275 YP_003756488.1 CDS Hden_2370 NC_014313.1 2429228 2429914 D KEGG: met:M446_6435 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 2429228..2429914 Hyphomicrobium denitrificans ATCC 51888 9388276 YP_003756489.1 CDS Hden_2371 NC_014313.1 2429999 2430523 D KEGG: bja:blr2558 hypothetical protein; hypothetical protein 2429999..2430523 Hyphomicrobium denitrificans ATCC 51888 9388277 YP_003756490.1 CDS Hden_2372 NC_014313.1 2430534 2430863 D PFAM: blue (type 1) copper domain protein; KEGG: sil:SPO0256 plastocyanin/azurin family copper binding protein; blue (type 1) copper domain-containing protein 2430534..2430863 Hyphomicrobium denitrificans ATCC 51888 9388278 YP_003756491.1 CDS Hden_2373 NC_014313.1 2430886 2431899 R KEGG: mno:Mnod_7690 signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation/phosphoacceptor; SMART: ATP-binding region ATPase domain protein; signal transduction histidine kinase complement(2430886..2431899) Hyphomicrobium denitrificans ATCC 51888 9388279 YP_003756492.1 CDS Hden_2374 NC_014313.1 2432100 2432606 D KEGG: pml:ATP_00463 probable oligopeptide ABC transporter substrate-binding protein; hypothetical protein 2432100..2432606 Hyphomicrobium denitrificans ATCC 51888 9388280 YP_003756493.1 CDS Hden_2375 NC_014313.1 2432883 2433092 D KEGG: bja:bsl4595 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2432883..2433092 Hyphomicrobium denitrificans ATCC 51888 9388281 YP_003756494.1 CDS Hden_2376 NC_014313.1 2433160 2433762 R PFAM: protein of unknown function DUF1285; KEGG: oan:Oant_1610 hypothetical protein; hypothetical protein complement(2433160..2433762) Hyphomicrobium denitrificans ATCC 51888 9388282 YP_003756495.1 CDS Hden_2377 NC_014313.1 2433888 2434970 D KEGG: azc:AZC_3509 methanol dehydrogenase regulator; PFAM: ATPase associated with various cellular activities AAA_3; SMART: ATPase AAA; ATPase AAA 2433888..2434970 Hyphomicrobium denitrificans ATCC 51888 9388283 YP_003756496.1 CDS Hden_2378 NC_014313.1 2434977 2435948 D PFAM: protein of unknown function DUF58; KEGG: azc:AZC_3510 hypothetical protein; hypothetical protein 2434977..2435948 Hyphomicrobium denitrificans ATCC 51888 9388284 YP_003756497.1 CDS Hden_2379 NC_014313.1 2435945 2438917 D TIGRFAM: conserved hypothetical protein; KEGG: pla:Plav_2232 hypothetical protein; hypothetical protein 2435945..2438917 Hyphomicrobium denitrificans ATCC 51888 9388285 YP_003756498.1 CDS Hden_2380 NC_014313.1 2438928 2441063 D PFAM: protein of unknown function DUF1355; KEGG: rpe:RPE_0937 hypothetical protein; hypothetical protein 2438928..2441063 Hyphomicrobium denitrificans ATCC 51888 9388286 YP_003756499.1 CDS Hden_2381 NC_014313.1 2441087 2441884 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bav:BAV1034 dehydrogenase; 6-phosphogluconate dehydrogenase 2441087..2441884 Hyphomicrobium denitrificans ATCC 51888 9388287 YP_003756500.1 CDS Hden_2382 NC_014313.1 2441976 2443592 D KEGG: hne:HNE_0811 hypothetical protein; hypothetical protein 2441976..2443592 Hyphomicrobium denitrificans ATCC 51888 9388288 YP_003756501.1 CDS Hden_2383 NC_014313.1 2443969 2445861 D KEGG: oca:OCAR_7033 thiamine biosynthesis protein ThiC; TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 2443969..2445861 Hyphomicrobium denitrificans ATCC 51888 9388289 YP_003756502.1 CDS Hden_2384 NC_014313.1 2445913 2446197 D KEGG: azl:AZL_a10050 osmoprotectant transporter permease; osmoprotectant transporter permease 2445913..2446197 Hyphomicrobium denitrificans ATCC 51888 9388290 YP_003756503.1 CDS Hden_2385 NC_014313.1 2446222 2446632 D KEGG: isc:IscW_ISCW000396 N-terminal acetyltransferase; hypothetical protein 2446222..2446632 Hyphomicrobium denitrificans ATCC 51888 9388291 YP_003756504.1 CDS Hden_2386 NC_014313.1 2446720 2447346 D KEGG: bja:blr6669 hypothetical protein; hypothetical protein 2446720..2447346 Hyphomicrobium denitrificans ATCC 51888 9388292 YP_003756505.1 CDS Hden_2387 NC_014313.1 2447943 2449271 R PFAM: polysaccharide deacetylase; KEGG: rpe:RPE_2396 polysaccharide deacetylase; polysaccharide deacetylase complement(2447943..2449271) Hyphomicrobium denitrificans ATCC 51888 9388293 YP_003756506.1 CDS Hden_2388 NC_014313.1 2449498 2449830 D KEGG: oca:OCAR_4274 hypothetical protein; hypothetical protein 2449498..2449830 Hyphomicrobium denitrificans ATCC 51888 9388294 YP_003756507.1 CDS Hden_2389 NC_014313.1 2450000 2450488 D PFAM: protein of unknown function DUF583; KEGG: sil:SPO2231 hypothetical protein; hypothetical protein 2450000..2450488 Hyphomicrobium denitrificans ATCC 51888 9388295 YP_003756508.1 CDS Hden_2390 NC_014313.1 2450587 2450898 R KEGG: dma:DMR_34920 hypothetical protein; hypothetical protein complement(2450587..2450898) Hyphomicrobium denitrificans ATCC 51888 9388296 YP_003756509.1 CDS Hden_2391 NC_014313.1 2451084 2452055 D PFAM: Mg2 transporter protein CorA family protein; KEGG: rru:Rru_A1883 magnesium/cobalt transporter CorA; Mg2 transporter protein CorA family protein 2451084..2452055 Hyphomicrobium denitrificans ATCC 51888 9388297 YP_003756510.1 CDS Hden_2392 NC_014313.1 2452592 2453179 D KEGG: xau:Xaut_4388 lipoprotein A; TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; lipoprotein A 2452592..2453179 Hyphomicrobium denitrificans ATCC 51888 9388298 YP_003756511.1 CDS Hden_2393 NC_014313.1 2453277 2453882 D KEGG: bbt:BBta_3870 RlpA family protein; TIGRFAM: lipoprotein A; PFAM: Rare lipoprotein A; lipoprotein A 2453277..2453882 Hyphomicrobium denitrificans ATCC 51888 9388299 YP_003756512.1 CDS Hden_2394 NC_014313.1 2453906 2454289 R KEGG: xau:Xaut_1900 hypothetical protein; hypothetical protein complement(2453906..2454289) Hyphomicrobium denitrificans ATCC 51888 9388300 YP_003756513.1 CDS Hden_2395 NC_014313.1 2454421 2455290 D KEGG: bbt:BBta_0665 hypothetical protein; PFAM: hypothetical protein; SMART: hypothetical protein; hypothetical protein 2454421..2455290 Hyphomicrobium denitrificans ATCC 51888 9388301 YP_003756514.1 CDS Hden_2396 NC_014313.1 2455331 2456425 R PFAM: patatin; KEGG: azc:AZC_4576 hypothetical protein; patatin complement(2455331..2456425) Hyphomicrobium denitrificans ATCC 51888 9388302 YP_003756515.1 CDS Hden_2397 NC_014313.1 2456739 2457644 R PFAM: metallophosphoesterase; KEGG: rpc:RPC_1382 metallophosphoesterase; metallophosphoesterase complement(2456739..2457644) Hyphomicrobium denitrificans ATCC 51888 9388303 YP_003756516.1 CDS Hden_2398 NC_014313.1 2457740 2458189 D KEGG: rpt:Rpal_4874 NUDIX hydrolase; NUDIX hydrolase 2457740..2458189 Hyphomicrobium denitrificans ATCC 51888 9388304 YP_003756517.1 CDS Hden_2399 NC_014313.1 2458226 2458744 D PFAM: GCN5-related N-acetyltransferase; KEGG: xau:Xaut_3230 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2458226..2458744 Hyphomicrobium denitrificans ATCC 51888 9388305 YP_003756518.1 CDS Hden_2400 NC_014313.1 2458959 2461091 D PFAM: protein of unknown function DUF1217; KEGG: avi:Avi_0969 hypothetical protein; hypothetical protein 2458959..2461091 Hyphomicrobium denitrificans ATCC 51888 9388306 YP_003756519.1 CDS Hden_2401 NC_014313.1 2461145 2461372 D KEGG: tgo:TGME49_081420 histone deacetylase; histone deacetylase 2461145..2461372 Hyphomicrobium denitrificans ATCC 51888 9388307 YP_003756520.1 CDS Hden_2402 NC_014313.1 2461417 2462304 R PFAM: polysaccharide deacetylase; KEGG: nha:Nham_1255 polysaccharide deacetylase; polysaccharide deacetylase complement(2461417..2462304) Hyphomicrobium denitrificans ATCC 51888 9388308 YP_003756521.1 CDS Hden_2403 NC_014313.1 2462484 2462894 D PFAM: NUDIX hydrolase; KEGG: rhi:NGR_b16940 NTP pyrophosphohydrolase, MutT family; NUDIX hydrolase 2462484..2462894 Hyphomicrobium denitrificans ATCC 51888 9388309 YP_003756522.1 CDS Hden_2404 NC_014313.1 2462921 2463556 R KEGG: spu:586898 similar to N-acetyltransferase ESCO1 (Establishment of cohesion 1 homolog 1); hypothetical protein complement(2462921..2463556) Hyphomicrobium denitrificans ATCC 51888 9388310 YP_003756523.1 CDS Hden_2405 NC_014313.1 2463676 2464965 R SMART: adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; KEGG: mch:Mchl_0962 adenylosuccinate synthase; PFAM: adenylosuccinate synthetase; adenylosuccinate synthetase complement(2463676..2464965) Hyphomicrobium denitrificans ATCC 51888 9388311 YP_003756524.1 CDS Hden_2406 NC_014313.1 2465071 2466807 R KEGG: bbt:BBta_1827 hypothetical protein; hypothetical protein complement(2465071..2466807) Hyphomicrobium denitrificans ATCC 51888 9388312 YP_003756525.1 CDS Hden_2407 NC_014313.1 2466923 2468215 R TIGRFAM: phosphoserine aminotransferase; KEGG: bid:Bind_1270 phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase complement(2466923..2468215) Hyphomicrobium denitrificans ATCC 51888 9388313 YP_003756526.1 CDS Hden_2408 NC_014313.1 2468257 2469195 R KEGG: mch:Mchl_5304 porin opacity type; hypothetical protein complement(2468257..2469195) Hyphomicrobium denitrificans ATCC 51888 9388314 YP_003756527.1 CDS Hden_2409 NC_014313.1 2469441 2470244 R KEGG: mpo:Mpop_5382 porin opacity type; porin opacity type complement(2469441..2470244) Hyphomicrobium denitrificans ATCC 51888 9388315 YP_003756528.1 CDS Hden_2410 NC_014313.1 2470514 2471863 R KEGG: rlg:Rleg_3490 phosphoglucosamine mutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; phosphoglucosamine mutase complement(2470514..2471863) Hyphomicrobium denitrificans ATCC 51888 9388316 YP_003756529.1 CDS Hden_2411 NC_014313.1 2472189 2473097 D PFAM: cobyrinic acid ac-diamide synthase; KEGG: hba:Hbal_1849 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 2472189..2473097 Hyphomicrobium denitrificans ATCC 51888 9388317 YP_003756530.1 CDS Hden_2412 NC_014313.1 2473125 2473589 D KEGG: pst:PSPTO_B0024 resolvase; hypothetical protein 2473125..2473589 Hyphomicrobium denitrificans ATCC 51888 9388318 YP_003756531.1 CDS Hden_2413 NC_014313.1 2473632 2474972 D PFAM: amino acid permease-associated region; KEGG: rxy:Rxyl_1097 amino acid permease-associated region; amino acid permease-associated protein 2473632..2474972 Hyphomicrobium denitrificans ATCC 51888 9388319 YP_003756532.1 CDS Hden_2414 NC_014313.1 2474977 2475591 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: bbt:BBta_7101 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein complement(2474977..2475591) Hyphomicrobium denitrificans ATCC 51888 9388320 YP_003756533.1 CDS Hden_2415 NC_014313.1 2475623 2476726 R TIGRFAM: dihydropteroate synthase; KEGG: rsk:RSKD131_0172 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(2475623..2476726) Hyphomicrobium denitrificans ATCC 51888 9388321 YP_003756534.1 CDS Hden_2416 NC_014313.1 2477060 2479015 R SMART: ATPase AAA; TIGRFAM: ATP-dependent metalloprotease FtsH; KEGG: mes:Meso_3167 membrane protease FtsH catalytic subunit; PFAM: peptidase M41; ATPase AAA; peptidase M41 FtsH extracellular; ATP-dependent metalloprotease FtsH complement(2477060..2479015) Hyphomicrobium denitrificans ATCC 51888 9388322 YP_003756535.1 CDS Hden_2417 NC_014313.1 2479147 2480478 R KEGG: pla:Plav_2125 tRNA(Ile)-lysidine synthetase; TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase complement(2479147..2480478) Hyphomicrobium denitrificans ATCC 51888 9388323 YP_003756536.1 CDS Hden_2418 NC_014313.1 2480502 2481503 R TIGRFAM: tol-pal system protein YbgF; KEGG: pla:Plav_2124 Tol-Pal system YbgF; tol-pal system protein YbgF complement(2480502..2481503) Hyphomicrobium denitrificans ATCC 51888 9388324 YP_003756537.1 CDS Hden_2419 NC_014313.1 2481677 2482465 R PFAM: OmpA/MotB domain protein; KEGG: bra:BRADO1176 outer membrane lipoprotein omp16 precursor (peptidoglycan-associated lipoprotein); OmpA/MotB domain-containing protein complement(2481677..2482465) Hyphomicrobium denitrificans ATCC 51888 9388325 YP_003756538.1 CDS Hden_2420 NC_014313.1 2482615 2483130 R KEGG: rpc:RPC_4748 OmpA/MotB; TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; peptidoglycan-associated lipoprotein complement(2482615..2483130) Hyphomicrobium denitrificans ATCC 51888 9388326 YP_003756539.1 CDS Hden_2421 NC_014313.1 2483575 2483700 R hypothetical protein complement(2483575..2483700) Hyphomicrobium denitrificans ATCC 51888 9388327 YP_003756540.1 CDS Hden_2422 NC_014313.1 2483735 2483869 R hypothetical protein complement(2483735..2483869) Hyphomicrobium denitrificans ATCC 51888 9388328 YP_003756541.1 CDS Hden_2423 NC_014313.1 2484126 2485463 R KEGG: oan:Oant_1218 translocation protein TolB; TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; hypothetical protein; Tol-Pal system beta propeller repeat protein TolB complement(2484126..2485463) Hyphomicrobium denitrificans ATCC 51888 9388329 YP_003756542.1 CDS Hden_2424 NC_014313.1 2485543 2486697 R TIGRFAM: protein TolA; KEGG: mpo:Mpop_5303 protein TolA; protein TolA complement(2485543..2486697) Hyphomicrobium denitrificans ATCC 51888 9388330 YP_003756543.1 CDS Hden_2425 NC_014313.1 2486700 2487158 R KEGG: azc:AZC_0522 biopolymer transporter; TIGRFAM: protein TolR; PFAM: biopolymertransporter ExbD/TolR; protein TolR complement(2486700..2487158) Hyphomicrobium denitrificans ATCC 51888 9388331 YP_003756544.1 CDS Hden_2426 NC_014313.1 2487163 2487879 R KEGG: oca:OCAR_7293 protein TolQ; TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ complement(2487163..2487879) Hyphomicrobium denitrificans ATCC 51888 9388332 YP_003756545.1 CDS Hden_2427 NC_014313.1 2488532 2488831 D KEGG: mpo:Mpop_0219 hypothetical protein; hypothetical protein 2488532..2488831 Hyphomicrobium denitrificans ATCC 51888 9388333 YP_003756546.1 CDS Hden_2428 NC_014313.1 2488843 2489229 D KEGG: msl:Msil_2630 hypothetical protein; hypothetical protein 2488843..2489229 Hyphomicrobium denitrificans ATCC 51888 9388334 YP_003756547.1 CDS Hden_2429 NC_014313.1 2489239 2489424 D KEGG: mlo:msl7316 hypothetical protein; hypothetical protein 2489239..2489424 Hyphomicrobium denitrificans ATCC 51888 9388335 YP_003756548.1 CDS Hden_2430 NC_014313.1 2489421 2490806 D PFAM: amino acid permease-associated region; KEGG: smd:Smed_3297 amino acid permease-associated region; amino acid permease-associated protein 2489421..2490806 Hyphomicrobium denitrificans ATCC 51888 9388336 YP_003756549.1 CDS Hden_2431 NC_014313.1 2490874 2491554 D KEGG: msl:Msil_2627 hypothetical protein; hypothetical protein 2490874..2491554 Hyphomicrobium denitrificans ATCC 51888 9388337 YP_003756550.1 CDS Hden_2432 NC_014313.1 2491551 2491838 D KEGG: smd:Smed_3295 hypothetical protein; hypothetical protein 2491551..2491838 Hyphomicrobium denitrificans ATCC 51888 9388338 YP_003756551.1 CDS Hden_2433 NC_014313.1 2491868 2492350 R KEGG: rpc:RPC_1924 4-hydroxybenzoyl-CoA thioesterase; TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; tol-pal system-associated acyl-CoA thioesterase complement(2491868..2492350) Hyphomicrobium denitrificans ATCC 51888 9388339 YP_003756552.1 CDS Hden_2434 NC_014313.1 2492347 2493288 R PFAM: metallophosphoesterase; KEGG: rlg:Rleg_3517 metallophosphoesterase; metallophosphoesterase complement(2492347..2493288) Hyphomicrobium denitrificans ATCC 51888 9388340 YP_003756553.1 CDS Hden_2435 NC_014313.1 2493400 2494446 R TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: Holliday junction DNA helicase RuvB domain; ATPase AAA central domain protein; KEGG: bbt:BBta_6906 Holliday junction DNA helicase RuvB; SMART: AAA ATPase; Holliday junction DNA helicase RuvB complement(2493400..2494446) Hyphomicrobium denitrificans ATCC 51888 9388341 YP_003756554.1 CDS Hden_2436 NC_014313.1 2494526 2494957 R KEGG: dac:Daci_2258 acriflavin resistance protein; hypothetical protein complement(2494526..2494957) Hyphomicrobium denitrificans ATCC 51888 9388342 YP_003756555.1 CDS Hden_2437 NC_014313.1 2495082 2495699 R TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; RuvA domain protein; KEGG: bja:blr1536 Holliday junction DNA helicase RuvA; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA complement(2495082..2495699) Hyphomicrobium denitrificans ATCC 51888 9388343 YP_003756556.1 CDS Hden_2438 NC_014313.1 2495696 2496223 R TIGRFAM: crossover junction endodeoxyribonuclease RuvC; KEGG: rpt:Rpal_1289 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC complement(2495696..2496223) Hyphomicrobium denitrificans ATCC 51888 9388344 YP_003756557.1 CDS Hden_2439 NC_014313.1 2496220 2498319 R KEGG: bcv:Bcav_2280 integral membrane protein; hypothetical protein complement(2496220..2498319) Hyphomicrobium denitrificans ATCC 51888 9388345 YP_003756558.1 CDS Hden_2440 NC_014313.1 2498494 2498784 D KEGG: alcohol dehydrogenase GroES domain protein; hypothetical protein 2498494..2498784 Hyphomicrobium denitrificans ATCC 51888 9388346 YP_003756559.1 CDS Hden_2441 NC_014313.1 2498797 2499546 R PFAM: protein of unknown function DUF28; KEGG: sme:SMc03969 hypothetical protein; hypothetical protein complement(2498797..2499546) Hyphomicrobium denitrificans ATCC 51888 9388347 YP_003756560.1 CDS Hden_2442 NC_014313.1 2499637 2500452 R PFAM: metallophosphoesterase; KEGG: pla:Plav_2112 metallophosphoesterase; metallophosphoesterase complement(2499637..2500452) Hyphomicrobium denitrificans ATCC 51888 9388348 YP_003756561.1 CDS Hden_2443 NC_014313.1 2500466 2501056 R KEGG: oca:OCAR_7307 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(2500466..2501056) Hyphomicrobium denitrificans ATCC 51888 9388349 YP_003756562.1 CDS Hden_2444 NC_014313.1 2501295 2501582 R PFAM: protein of unknown function DUF710; KEGG: pla:Plav_2110 hypothetical protein; hypothetical protein complement(2501295..2501582) Hyphomicrobium denitrificans ATCC 51888 9388351 YP_003756563.1 CDS Hden_2445 NC_014313.1 2501628 2501843 R KEGG: chl:Chy400_3800 propeptide PepSY amd peptidase M4; hypothetical protein complement(2501628..2501843) Hyphomicrobium denitrificans ATCC 51888 9388352 YP_003756564.1 CDS Hden_2446 NC_014313.1 2502136 2503143 D SMART: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: xau:Xaut_3075 glyceraldehyde-3-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase 2502136..2503143 Hyphomicrobium denitrificans ATCC 51888 9388353 YP_003756565.1 CDS Hden_2447 NC_014313.1 2503230 2504264 D KEGG: oan:Oant_1185 fructose-bisphosphate aldolase; PFAM: fructose-bisphosphate aldolase class-I; fructose-bisphosphate aldolase 2503230..2504264 Hyphomicrobium denitrificans ATCC 51888 9388354 YP_003756566.1 CDS Hden_2448 NC_014313.1 2504364 2506595 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; peptidoglycan-binding protein; KEGG: azc:AZC_0439 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(2504364..2506595) Hyphomicrobium denitrificans ATCC 51888 9388355 YP_003756567.1 CDS Hden_2449 NC_014313.1 2506884 2507528 D PFAM: thiamine monophosphate synthase; KEGG: hne:HNE_3185 thiamine-phosphate pyrophosphorylase; thiamine monophosphate synthase 2506884..2507528 Hyphomicrobium denitrificans ATCC 51888 9388356 YP_003756568.1 CDS Hden_2450 NC_014313.1 2507525 2508613 D KEGG: oca:OCAR_7315 Sel1; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein repeat-containing protein 2507525..2508613 Hyphomicrobium denitrificans ATCC 51888 9388357 YP_003756569.1 CDS Hden_2451 NC_014313.1 2508732 2509526 D PFAM: inositol monophosphatase; KEGG: pla:Plav_2101 inositol-phosphate phosphatase; inositol monophosphatase 2508732..2509526 Hyphomicrobium denitrificans ATCC 51888 9388358 YP_003756570.1 CDS Hden_2452 NC_014313.1 2509638 2510702 D KEGG: oca:OCAR_7317 MotA/TolQ/ExbB proton channel family; MotA/TolQ/ExbB proton channel family 2509638..2510702 Hyphomicrobium denitrificans ATCC 51888 9388359 YP_003756571.1 CDS Hden_2453 NC_014313.1 2510707 2511735 D PFAM: OmpA/MotB domain protein; KEGG: oca:OCAR_7318 hypothetical protein; OmpA/MotB domain-containing protein 2510707..2511735 Hyphomicrobium denitrificans ATCC 51888 9388360 YP_003756572.1 CDS Hden_2454 NC_014313.1 2511954 2513771 R TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter; ABC transporter transmembrane region; KEGG: rhi:NGR_c28180 ABC transporter ATP-binding protein, ATPase; SMART: ATPase AAA; lipid A ABC exporter family, fused ATPase and inner membrane subunits complement(2511954..2513771) Hyphomicrobium denitrificans ATCC 51888 9388361 YP_003756573.1 CDS Hden_2455 NC_014313.1 2514037 2514261 D KEGG: mes:Meso_3190 50S ribosomal protein L31; TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; 50S ribosomal protein L31 2514037..2514261 Hyphomicrobium denitrificans ATCC 51888 9388362 YP_003756574.1 CDS Hden_2456 NC_014313.1 2514348 2514896 R PFAM: protein of unknown function DUF1465; KEGG: avi:Avi_3663 hypothetical protein; hypothetical protein complement(2514348..2514896) Hyphomicrobium denitrificans ATCC 51888 9388363 YP_003756575.1 CDS Hden_2457 NC_014313.1 2515271 2515462 R PFAM: protein of unknown function DUF1192; KEGG: mag:amb2678 hypothetical protein; hypothetical protein complement(2515271..2515462) Hyphomicrobium denitrificans ATCC 51888 9388364 YP_003756576.1 CDS Hden_2458 NC_014313.1 2515444 2515584 R hypothetical protein complement(2515444..2515584) Hyphomicrobium denitrificans ATCC 51888 9388365 YP_003756577.1 CDS Hden_2459 NC_014313.1 2515603 2516613 D KEGG: rru:Rru_A1056 zinc-containing alcohol dehydrogenase superfamily protein; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; NAD(P)H quinone oxidoreductase, PIG3 family 2515603..2516613 Hyphomicrobium denitrificans ATCC 51888 9388366 YP_003756578.1 CDS Hden_2460 NC_014313.1 2516896 2517750 R KEGG: met:M446_2225 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; HAD-superfamily subfamily IIA hydrolase like protein; PFAM: haloacid dehalogenase; HAD-superfamily hydrolase complement(2516896..2517750) Hyphomicrobium denitrificans ATCC 51888 9388367 YP_003756579.1 CDS Hden_2461 NC_014313.1 2517884 2519947 R KEGG: rpt:Rpal_1371 diguanylate phosphodiesterase; PFAM: EAL domain protein; SMART: EAL domain protein; diguanylate phosphodiesterase complement(2517884..2519947) Hyphomicrobium denitrificans ATCC 51888 9388368 YP_003756580.1 CDS Hden_2462 NC_014313.1 2520273 2521019 D KEGG: eat:EAT1b_2885 3-oxoacyl-(acyl-carrier-protein) reductase; hypothetical protein 2520273..2521019 Hyphomicrobium denitrificans ATCC 51888 9388369 YP_003756581.1 CDS Hden_2463 NC_014313.1 2521085 2522020 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azl:AZL_a00120 transcriptional regulator; LysR family transcriptional regulator 2521085..2522020 Hyphomicrobium denitrificans ATCC 51888 9388370 YP_003756582.1 CDS Hden_2464 NC_014313.1 2522198 2522728 D PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: reh:H16_A0640 NAD-dependent formate dehydrogenase gamma subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 2522198..2522728 Hyphomicrobium denitrificans ATCC 51888 9388371 YP_003756583.1 CDS Hden_2465 NC_014313.1 2522725 2524290 D KEGG: azl:AZL_a00160 formate dehydrogenase, beta subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; Soluble ligand binding domain; NADH dehydrogenase (quinone) 2522725..2524290 Hyphomicrobium denitrificans ATCC 51888 9388372 YP_003756584.1 CDS Hden_2466 NC_014313.1 2524347 2527244 D manually curated; TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: azl:AZL_a00170 formate dehydrogenase, subunit alpha; PFAM: molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha 2524347..2527244 Hyphomicrobium denitrificans ATCC 51888 9388373 YP_003756585.1 CDS Hden_2467 NC_014313.1 2527275 2528093 D KEGG: azl:AZL_a00180 formate dehydrogenase accessory protein; TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; formate dehydrogenase family accessory protein FdhD 2527275..2528093 Hyphomicrobium denitrificans ATCC 51888 9388374 YP_003756586.1 CDS Hden_2468 NC_014313.1 2528135 2528416 D KEGG: met:M446_2356 hypothetical protein; hypothetical protein 2528135..2528416 Hyphomicrobium denitrificans ATCC 51888 9388375 YP_003756587.1 CDS Hden_2469 NC_014313.1 2528488 2530572 R TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; elongation factor Tu domain 2 protein; protein synthesis factor GTP-binding; elongation factor G domain protein; KEGG: rpc:RPC_4119 elongation factor G; SMART: elongation factor G domain IV; elongation factor G domain protein; small GTP-binding protein complement(2528488..2530572) Hyphomicrobium denitrificans ATCC 51888 9388376 YP_003756588.1 CDS Hden_2471 NC_014313.1 2531287 2532489 R PFAM: aminotransferase class I and II; KEGG: pla:Plav_2300 aspartate aminotransferase; class I and II aminotransferase complement(2531287..2532489) Hyphomicrobium denitrificans ATCC 51888 9388378 YP_003756589.1 CDS Hden_2472 NC_014313.1 2532811 2533257 D KEGG: svi:Svir_24120 ribonuclease D; hypothetical protein 2532811..2533257 Hyphomicrobium denitrificans ATCC 51888 9388379 YP_003756590.1 CDS Hden_2473 NC_014313.1 2533355 2533840 D KEGG: cre:CHLREDRAFT_181050 hypothetical protein; hypothetical protein 2533355..2533840 Hyphomicrobium denitrificans ATCC 51888 9388380 YP_003756591.1 CDS Hden_2474 NC_014313.1 2533880 2534620 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr0293 carbonyl reductase; short-chain dehydrogenase/reductase SDR complement(2533880..2534620) Hyphomicrobium denitrificans ATCC 51888 9388381 YP_003756592.1 CDS Hden_2475 NC_014313.1 2534722 2534958 R KEGG: nha:Nham_3496 hypothetical protein; hypothetical protein complement(2534722..2534958) Hyphomicrobium denitrificans ATCC 51888 9388382 YP_003756593.1 CDS Hden_2476 NC_014313.1 2535463 2538168 D TIGRFAM: excinuclease ABC subunit B; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; KEGG: oca:OCAR_7183 excinuclease ABC subunit B; SMART: DEAD-like helicase ; helicase; excinuclease ABC subunit B 2535463..2538168 Hyphomicrobium denitrificans ATCC 51888 9388383 YP_003756594.1 CDS Hden_2477 NC_014313.1 2538273 2538851 D KEGG: mno:Mnod_1815 intracellular protease PfpI family; TIGRFAM: intracellular protease PfpI family; PFAM: ThiJ/PfpI domain protein; intracellular protease PfpI family 2538273..2538851 Hyphomicrobium denitrificans ATCC 51888 9388384 YP_003756595.1 CDS Hden_2478 NC_014313.1 2538863 2539171 R KEGG: tmz:Tmz1t_3431 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D -alanyl ligase; hypothetical protein complement(2538863..2539171) Hyphomicrobium denitrificans ATCC 51888 9388385 YP_003756596.1 CDS Hden_2479 NC_014313.1 2539405 2540094 D PFAM: phosphoglycerate mutase; KEGG: rso:RSc3377 hypothetical protein; phosphoglycerate mutase 2539405..2540094 Hyphomicrobium denitrificans ATCC 51888 9388386 YP_003756597.1 CDS Hden_2480 NC_014313.1 2540116 2540619 R KEGG: bid:Bind_2062 hypothetical protein; hypothetical protein complement(2540116..2540619) Hyphomicrobium denitrificans ATCC 51888 9388387 YP_003756598.1 CDS Hden_2481 NC_014313.1 2541069 2541581 D KEGG: rpt:Rpal_4266 hypothetical protein; hypothetical protein 2541069..2541581 Hyphomicrobium denitrificans ATCC 51888 9388388 YP_003756599.1 CDS Hden_2482 NC_014313.1 2541629 2542000 D KEGG: apr:Apre_1555 ribosomal protein L15; hypothetical protein 2541629..2542000 Hyphomicrobium denitrificans ATCC 51888 9388389 YP_003756600.1 CDS Hden_2483 NC_014313.1 2542105 2542767 R SMART: beta-lactamase; KEGG: mpo:Mpop_2508 beta-lactamase; beta-lactamase complement(2542105..2542767) Hyphomicrobium denitrificans ATCC 51888 9388390 YP_003756601.1 CDS Hden_2484 NC_014313.1 2542994 2544481 D KEGG: oca:OCAR_7002 hypothetical protein; hypothetical protein 2542994..2544481 Hyphomicrobium denitrificans ATCC 51888 9388391 YP_003756602.1 CDS Hden_2485 NC_014313.1 2544433 2544537 R hypothetical protein complement(2544433..2544537) Hyphomicrobium denitrificans ATCC 51888 9388392 YP_003756603.1 CDS Hden_2486 NC_014313.1 2544589 2545287 R KEGG: mlo:mll2816 two-component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator complement(2544589..2545287) Hyphomicrobium denitrificans ATCC 51888 9388393 YP_003756604.1 CDS Hden_2487 NC_014313.1 2545964 2546344 D KEGG: oca:OCAR_7109 flagellar export protein FliJ; flagellar export protein FliJ 2545964..2546344 Hyphomicrobium denitrificans ATCC 51888 9388394 YP_003756605.1 CDS Hden_2488 NC_014313.1 2546555 2547268 D KEGG: cur:cur_1817 Fe-S oxidoreductase; hypothetical protein 2546555..2547268 Hyphomicrobium denitrificans ATCC 51888 9388395 YP_003756606.1 CDS Hden_2489 NC_014313.1 2547352 2547630 R PFAM: protein of unknown function DUF1153; KEGG: azc:AZC_1033 hypothetical protein; hypothetical protein complement(2547352..2547630) Hyphomicrobium denitrificans ATCC 51888 9388396 YP_003756607.1 CDS Hden_2490 NC_014313.1 2548038 2549231 D KEGG: nwi:Nwi_0603 tRNA-specific 2-thiouridylase MnmA; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2548038..2549231 Hyphomicrobium denitrificans ATCC 51888 9388397 YP_003756608.1 CDS Hden_2491 NC_014313.1 2549266 2550000 D KEGG: pla:Plav_2189 phosphatidylethanolamine N-methyltransferase; PFAM: methyltransferase type 11; phosphatidylethanolamine N-methyltransferase 2549266..2550000 Hyphomicrobium denitrificans ATCC 51888 9388398 YP_003756609.1 CDS Hden_2492 NC_014313.1 2550371 2550790 R PFAM: class I peptide chain release factor; KEGG: rce:RC1_1710 peptidyl-tRNA hydrolase domain; class I peptide chain release factor complement(2550371..2550790) Hyphomicrobium denitrificans ATCC 51888 9388400 YP_003756610.1 CDS Hden_2493 NC_014313.1 2550883 2552499 R PFAM: amine oxidase; KEGG: nar:Saro_1673 FAD dependent oxidoreductase; amine oxidase complement(2550883..2552499) Hyphomicrobium denitrificans ATCC 51888 9388401 YP_003756611.1 CDS Hden_2494 NC_014313.1 2552759 2553010 D KEGG: sgr:SGR_2594 integral membrane ion antiporter; integral membrane ion antiporter 2552759..2553010 Hyphomicrobium denitrificans ATCC 51888 9388402 YP_003756612.1 CDS Hden_2495 NC_014313.1 2553036 2553314 R KEGG: cre:CHLREDRAFT_142105 phosphoglycolate phosphatase; hypothetical protein complement(2553036..2553314) Hyphomicrobium denitrificans ATCC 51888 9388403 YP_003756613.1 CDS Hden_2496 NC_014313.1 2553403 2554299 R KEGG: ccs:CCNA_03024 branched-chain amino acid aminotransferase; TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; branched-chain amino acid aminotransferase complement(2553403..2554299) Hyphomicrobium denitrificans ATCC 51888 9388404 YP_003756614.1 CDS Hden_2497 NC_014313.1 2554503 2555084 D KEGG: azc:AZC_3973 regulatory protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 2554503..2555084 Hyphomicrobium denitrificans ATCC 51888 9388405 YP_003756615.1 CDS Hden_2498 NC_014313.1 2555096 2555797 D KEGG: mes:Meso_2142 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 2555096..2555797 Hyphomicrobium denitrificans ATCC 51888 9388406 YP_003756616.1 CDS Hden_2499 NC_014313.1 2555847 2557262 D KEGG: rpe:RPE_1426 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 2555847..2557262 Hyphomicrobium denitrificans ATCC 51888 9388407 YP_003756617.1 CDS Hden_2500 NC_014313.1 2557500 2558327 R TIGRFAM: pyrroline-5-carboxylate reductase; KEGG: azc:AZC_3979 delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(2557500..2558327) Hyphomicrobium denitrificans ATCC 51888 9388408 YP_003756618.1 CDS Hden_2501 NC_014313.1 2558361 2558858 R PFAM: protein of unknown function DUF1790; KEGG: mno:Mnod_1376 protein of unknown function DUF1790; hypothetical protein complement(2558361..2558858) Hyphomicrobium denitrificans ATCC 51888 9388409 YP_003756619.1 CDS Hden_2502 NC_014313.1 2559124 2559387 R PFAM: protein of unknown function DUF526; KEGG: ret:RHE_CH03017 hypothetical protein; hypothetical protein complement(2559124..2559387) Hyphomicrobium denitrificans ATCC 51888 9388410 YP_003756620.1 CDS Hden_2503 NC_014313.1 2559405 2559563 R hypothetical protein complement(2559405..2559563) Hyphomicrobium denitrificans ATCC 51888 9388411 YP_003756621.1 CDS Hden_2504 NC_014313.1 2559566 2560405 D KEGG: rhi:NGR_c22920 prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 2559566..2560405 Hyphomicrobium denitrificans ATCC 51888 9388412 YP_003756622.1 CDS Hden_2505 NC_014313.1 2560402 2561541 D PFAM: protein of unknown function DUF185; KEGG: msl:Msil_1134 protein of unknown function DUF185; hypothetical protein 2560402..2561541 Hyphomicrobium denitrificans ATCC 51888 9388413 YP_003756623.1 CDS Hden_2506 NC_014313.1 2561558 2562331 D PFAM: protein of unknown function DUF152; KEGG: pzu:PHZ_c2860 hypothetical protein; hypothetical protein 2561558..2562331 Hyphomicrobium denitrificans ATCC 51888 9388414 YP_003756624.1 CDS Hden_2507 NC_014313.1 2562534 2563580 D KEGG: bov:BOV_1481 lipoprotein; hypothetical protein 2562534..2563580 Hyphomicrobium denitrificans ATCC 51888 9388415 YP_003756625.1 CDS Hden_2508 NC_014313.1 2563749 2564684 D PFAM: phosphoribosyltransferase; manually curated; KEGG: pla:Plav_2258 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; ribose-phosphate pyrophosphokinase 2563749..2564684 Hyphomicrobium denitrificans ATCC 51888 9388416 YP_003756626.1 CDS Hden_2509 NC_014313.1 2564807 2565736 D KEGG: mpt:Mpe_A3383 hypothetical protein; hypothetical protein 2564807..2565736 Hyphomicrobium denitrificans ATCC 51888 9388417 YP_003756627.1 CDS Hden_2510 NC_014313.1 2565842 2566846 D PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: bid:Bind_1144 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein 2565842..2566846 Hyphomicrobium denitrificans ATCC 51888 9388418 YP_003756628.1 CDS Hden_2511 NC_014313.1 2566879 2567292 R KEGG: bmr:BMI_II1131 Fur family transcriptional regulator; Fur family transcriptional regulator complement(2566879..2567292) Hyphomicrobium denitrificans ATCC 51888 9388419 YP_003756629.1 CDS Hden_2512 NC_014313.1 2567576 2568304 D KEGG: rpe:RPE_1437 50S ribosomal protein L25/general stress protein Ctc; TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25-like; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 2567576..2568304 Hyphomicrobium denitrificans ATCC 51888 9388420 YP_003756630.1 CDS Hden_2513 NC_014313.1 2568421 2569164 D TIGRFAM: peptidyl-tRNA hydrolase; KEGG: sil:SPO0811 peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 2568421..2569164 Hyphomicrobium denitrificans ATCC 51888 9388421 YP_003756631.1 CDS Hden_2514 NC_014313.1 2569208 2569942 D KEGG: ter:Tery_3321 hypothetical protein; hypothetical protein 2569208..2569942 Hyphomicrobium denitrificans ATCC 51888 9388422 YP_003756632.1 CDS Hden_2515 NC_014313.1 2570057 2571154 D KEGG: pla:Plav_2255 GTP-binding protein YchF; TIGRFAM: GTP-binding protein YchF; PFAM: protein of unknown function DUF933; GTP-binding protein HSR1-related; GTP-binding protein YchF 2570057..2571154 Hyphomicrobium denitrificans ATCC 51888 9388423 YP_003756633.1 CDS Hden_2516 NC_014313.1 2571178 2571420 D KEGG: met:M446_4514 hypothetical protein; hypothetical protein 2571178..2571420 Hyphomicrobium denitrificans ATCC 51888 9388424 YP_003756634.1 CDS Hden_2517 NC_014313.1 2571434 2571739 R KEGG: oca:OCAR_7581 hypothetical protein; hypothetical protein complement(2571434..2571739) Hyphomicrobium denitrificans ATCC 51888 9388425 YP_003756635.1 CDS Hden_2518 NC_014313.1 2571897 2573372 R KEGG: rce:RC1_3548 catalase; PFAM: catalase related subgroup; catalase domain protein; catalase complement(2571897..2573372) Hyphomicrobium denitrificans ATCC 51888 9388426 YP_003756636.1 CDS Hden_2519 NC_014313.1 2573522 2574196 R PFAM: class II aldolase/adducin family protein; KEGG: pla:Plav_2248 class II aldolase/adducin family protein; class II aldolase/adducin family protein complement(2573522..2574196) Hyphomicrobium denitrificans ATCC 51888 9388427 YP_003756637.1 CDS Hden_2520 NC_014313.1 2574193 2575293 R TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; KEGG: pla:Plav_2247 eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family complement(2574193..2575293) Hyphomicrobium denitrificans ATCC 51888 9388428 YP_003756638.1 CDS Hden_2521 NC_014313.1 2575283 2576002 R KEGG: pfl:PFL_3106 BioH protein; BioH protein complement(2575283..2576002) Hyphomicrobium denitrificans ATCC 51888 9388429 YP_003756639.1 CDS Hden_2522 NC_014313.1 2575999 2576220 R KEGG: sen:SACE_1043 hypothetical protein; hypothetical protein complement(2575999..2576220) Hyphomicrobium denitrificans ATCC 51888 9388430 YP_003756640.1 CDS Hden_2523 NC_014313.1 2576229 2576759 R KEGG: mmr:Mmar10_0743 adenine phosphoribosyltransferase; TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; adenine phosphoribosyltransferase complement(2576229..2576759) Hyphomicrobium denitrificans ATCC 51888 9388431 YP_003756641.1 CDS Hden_2524 NC_014313.1 2576890 2577321 D KEGG: bpd:BURPS668_A2971 FHA domain-containing protein; FHA domain-containing protein 2576890..2577321 Hyphomicrobium denitrificans ATCC 51888 9388432 YP_003756642.1 CDS Hden_2525 NC_014313.1 2577419 2578312 R KEGG: bbt:BBta_0647 5'-methylthioadenosine phosphorylase; TIGRFAM: methylthioadenosine phosphorylase; PFAM: purine or other phosphorylase family 1; methylthioadenosine phosphorylase complement(2577419..2578312) Hyphomicrobium denitrificans ATCC 51888 9388433 YP_003756643.1 CDS Hden_2526 NC_014313.1 2578397 2579260 R PFAM: cytochrome C1; KEGG: azc:AZC_3499 cytochrome b/c1 precursor; cytochrome C1 complement(2578397..2579260) Hyphomicrobium denitrificans ATCC 51888 9388434 YP_003756644.1 CDS Hden_2527 NC_014313.1 2579275 2580588 R PFAM: cytochrome b/b6 domain; KEGG: bid:Bind_0155 cytochrome b/b6 domain-containing protein; cytochrome b/b6 domain-containing protein complement(2579275..2580588) Hyphomicrobium denitrificans ATCC 51888 9388435 YP_003756645.1 CDS Hden_2528 NC_014313.1 2580600 2581172 R TIGRFAM: ubiquinol-cytochrome C reductase, iron-sulfur subunit; KEGG: rlg:Rleg_3042 ubiquinol-cytochrome C reductase, iron-sulfur subunit; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain; ubiquinol-cytochrome C reductase, iron-sulfur subunit complement(2580600..2581172) Hyphomicrobium denitrificans ATCC 51888 9388436 YP_003756646.1 CDS Hden_2529 NC_014313.1 2581424 2581900 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: met:M446_6224 tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 2581424..2581900 Hyphomicrobium denitrificans ATCC 51888 9388437 YP_003756647.1 CDS Hden_2530 NC_014313.1 2581949 2582641 D KEGG: sil:SPO2852 CzcN domain-containing protein; CzcN domain-containing protein 2581949..2582641 Hyphomicrobium denitrificans ATCC 51888 9388438 YP_003756648.1 CDS Hden_2531 NC_014313.1 2582655 2584532 R KEGG: pap:PSPA7_1898 ATP-binding/permease fusion ABC transporter; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(2582655..2584532) Hyphomicrobium denitrificans ATCC 51888 9388439 YP_003756649.1 CDS Hden_2532 NC_014313.1 2584675 2585583 D KEGG: oan:Oant_1616 coproporphyrinogen III oxidase; PFAM: coproporphyrinogen III oxidase; coproporphyrinogen oxidase 2584675..2585583 Hyphomicrobium denitrificans ATCC 51888 9388440 YP_003756650.1 CDS Hden_2533 NC_014313.1 2585814 2586989 D PFAM: protein of unknown function DUF2235; KEGG: gob:Gobs_1208 protein of unknown function DUF2235; hypothetical protein 2585814..2586989 Hyphomicrobium denitrificans ATCC 51888 9388441 YP_003756651.1 CDS Hden_2534 NC_014313.1 2587142 2588212 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: bph:Bphy_4808 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 2587142..2588212 Hyphomicrobium denitrificans ATCC 51888 9388442 YP_003756652.1 CDS Hden_2535 NC_014313.1 2588241 2589473 R KEGG: nwi:Nwi_0278 hypothetical protein; hypothetical protein complement(2588241..2589473) Hyphomicrobium denitrificans ATCC 51888 9388443 YP_003756653.1 CDS Hden_2536 NC_014313.1 2589575 2590249 D PFAM: NUDIX hydrolase; KEGG: rpe:RPE_0942 NUDIX hydrolase; NUDIX hydrolase 2589575..2590249 Hyphomicrobium denitrificans ATCC 51888 9388444 YP_003756654.1 CDS Hden_2537 NC_014313.1 2590246 2590542 D KEGG: rce:RC1_3418 hypothetical protein; hypothetical protein 2590246..2590542 Hyphomicrobium denitrificans ATCC 51888 9388445 YP_003756655.1 CDS Hden_2538 NC_014313.1 2590546 2591802 D PFAM: polynucleotide adenylyltransferase region; KEGG: rpb:RPB_1196 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase region 2590546..2591802 Hyphomicrobium denitrificans ATCC 51888 9388446 YP_003756656.1 CDS Hden_2539 NC_014313.1 2591895 2592128 D KEGG: cin:100179124 similar to transmembrane protein 62; hypothetical protein 2591895..2592128 Hyphomicrobium denitrificans ATCC 51888 9388447 YP_003756657.1 CDS Hden_2540 NC_014313.1 2592257 2593069 D PFAM: metallophosphoesterase; KEGG: met:M446_4942 metallophosphoesterase; metallophosphoesterase 2592257..2593069 Hyphomicrobium denitrificans ATCC 51888 9388448 YP_003756658.1 CDS Hden_2541 NC_014313.1 2593114 2594358 D KEGG: oan:Oant_1728 hypothetical protein; hypothetical protein 2593114..2594358 Hyphomicrobium denitrificans ATCC 51888 9388449 YP_003756659.1 CDS Hden_2542 NC_014313.1 2594369 2595013 D PFAM: methyltransferase type 11; KEGG: bid:Bind_3050 methyltransferase type 12; type 11 methyltransferase 2594369..2595013 Hyphomicrobium denitrificans ATCC 51888 9388450 YP_003756660.1 CDS Hden_2543 NC_014313.1 2595037 2595219 R KEGG: bja:bsr4834 hypothetical protein; hypothetical protein complement(2595037..2595219) Hyphomicrobium denitrificans ATCC 51888 9388451 YP_003756661.1 CDS Hden_2544 NC_014313.1 2595399 2596250 R KEGG: mbr:MONBRDRAFT_29712 hypothetical protein; hypothetical protein complement(2595399..2596250) Hyphomicrobium denitrificans ATCC 51888 9388452 YP_003756662.1 CDS Hden_2545 NC_014313.1 2596590 2597027 D KEGG: noc:Noc_2920 hypothetical protein; hypothetical protein 2596590..2597027 Hyphomicrobium denitrificans ATCC 51888 9388453 YP_003756663.1 CDS Hden_2546 NC_014313.1 2597194 2598840 R KEGG: sme:SM_b21566 chaperonin GroEL; TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; chaperonin GroEL complement(2597194..2598840) Hyphomicrobium denitrificans ATCC 51888 9388454 YP_003756664.1 CDS Hden_2547 NC_014313.1 2598886 2599200 R KEGG: bbt:BBta_5284 co-chaperonin GroES; PFAM: chaperonin Cpn10; SMART: chaperonin Cpn10; chaperonin Cpn10 complement(2598886..2599200) Hyphomicrobium denitrificans ATCC 51888 9388455 YP_003756665.1 CDS Hden_2548 NC_014313.1 2599611 2599958 R KEGG: rsq:Rsph17025_4162 hypothetical protein; PFAM: histone family protein nucleoid-structuring protein H-NS; SMART: histone family protein nucleoid-structuring protein H-NS; histone family protein nucleoid-structuring protein H-NS complement(2599611..2599958) Hyphomicrobium denitrificans ATCC 51888 9388456 YP_003756666.1 CDS Hden_2549 NC_014313.1 2600424 2601014 D KEGG: bmr:BMI_I565 superoxide dismutase, Fe-Mn family; PFAM: Manganese/iron superoxide dismutase-like; superoxide dismutase 2600424..2601014 Hyphomicrobium denitrificans ATCC 51888 9388457 YP_003756667.1 CDS Hden_2550 NC_014313.1 2601101 2602936 D KEGG: jan:Jann_0922 cyclic nucleotide-binding domain-containing protein; PFAM: patatin; cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; cyclic nucleotide-binding protein 2601101..2602936 Hyphomicrobium denitrificans ATCC 51888 9388458 YP_003756668.1 CDS Hden_2551 NC_014313.1 2603074 2604423 D PFAM: patatin; KEGG: rpc:RPC_3027 patatin; patatin 2603074..2604423 Hyphomicrobium denitrificans ATCC 51888 9388459 YP_003756669.1 CDS Hden_2552 NC_014313.1 2604436 2604732 R KEGG: kpu:pK2044_01080 hypothetical protein; hypothetical protein complement(2604436..2604732) Hyphomicrobium denitrificans ATCC 51888 9388460 YP_003756670.1 CDS Hden_2553 NC_014313.1 2604857 2606293 R PFAM: protein of unknown function DUF853 NPT hydrolase KEGG: mpo:Mpop_4924 protein of unknown function DUF853 NPT hydrolase; hypothetical protein complement(2604857..2606293) Hyphomicrobium denitrificans ATCC 51888 9388461 YP_003756671.1 CDS Hden_2554 NC_014313.1 2606517 2608397 D KEGG: rru:Rru_A2480 methylmalonyl-CoA mutase; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase 2606517..2608397 Hyphomicrobium denitrificans ATCC 51888 9388462 YP_003756672.1 CDS Hden_2555 NC_014313.1 2608450 2609850 D PFAM: Cl- channel voltage-gated family protein; KEGG: azc:AZC_1474 chloride channel protein; Cl- channel voltage-gated family protein 2608450..2609850 Hyphomicrobium denitrificans ATCC 51888 9388463 YP_003756673.1 CDS Hden_2556 NC_014313.1 2609839 2610492 R KEGG: aau:AAur_2369 ribonuclease Rne/Rng family protein; hypothetical protein complement(2609839..2610492) Hyphomicrobium denitrificans ATCC 51888 9388464 YP_003756674.1 CDS Hden_2557 NC_014313.1 2610774 2610974 R KEGG: dan:Dana_GF21393 GF21393 gene product from transcript GF21393-RA; hypothetical protein complement(2610774..2610974) Hyphomicrobium denitrificans ATCC 51888 9388465 YP_003756675.1 CDS Hden_2558 NC_014313.1 2611221 2611496 R KEGG: sus:acid_7895 hypothetical protein; hypothetical protein complement(2611221..2611496) Hyphomicrobium denitrificans ATCC 51888 9388466 YP_003756676.1 CDS Hden_2559 NC_014313.1 2611572 2612510 R PFAM: protein of unknown function DUF817; KEGG: mea:Mex_1p5253 hypothetical protein; hypothetical protein complement(2611572..2612510) Hyphomicrobium denitrificans ATCC 51888 9388467 YP_003756677.1 CDS Hden_2560 NC_014313.1 2612714 2614888 D TIGRFAM: methylmalonyl-CoA mutase, large subunit; KEGG: mno:Mnod_4573 methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase, large subunit 2612714..2614888 Hyphomicrobium denitrificans ATCC 51888 9388468 YP_003756678.1 CDS Hden_2561 NC_014313.1 2614953 2616860 R manually curated; PFAM: DEAD/DEAH box helicase domain protein; helicase; KEGG: pla:Plav_2485 DEAD/DEAH box helicase domain-containing protein; SMART: DEAD-like helicase ; helicase domain protein; DEAD/DEAH box helicase complement(2614953..2616860) Hyphomicrobium denitrificans ATCC 51888 9388469 YP_003756679.1 CDS Hden_2562 NC_014313.1 2617152 2617610 D KEGG: ddr:Deide_22680 hypothetical protein; hypothetical protein 2617152..2617610 Hyphomicrobium denitrificans ATCC 51888 9388470 YP_003756680.1 CDS Hden_2563 NC_014313.1 2617620 2618561 R KEGG: rpt:Rpal_4151 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase complement(2617620..2618561) Hyphomicrobium denitrificans ATCC 51888 9388471 YP_003756681.1 CDS Hden_2564 NC_014313.1 2618879 2619307 D KEGG: bid:Bind_2062 hypothetical protein; hypothetical protein 2618879..2619307 Hyphomicrobium denitrificans ATCC 51888 9388472 YP_003756682.1 CDS Hden_2565 NC_014313.1 2619425 2620090 R PFAM: protein of unknown function DUF1520; KEGG: nha:Nham_2714 hypothetical protein; hypothetical protein complement(2619425..2620090) Hyphomicrobium denitrificans ATCC 51888 9388473 YP_003756683.1 CDS Hden_2566 NC_014313.1 2620256 2620681 R KEGG: cre:CHLREDRAFT_174693 hypothetical protein; hypothetical protein complement(2620256..2620681) Hyphomicrobium denitrificans ATCC 51888 9388474 YP_003756684.1 CDS Hden_2567 NC_014313.1 2620840 2622462 R PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: pph:Ppha_1468 protein of unknown function DUF900 hydrolase family protein; hypothetical protein complement(2620840..2622462) Hyphomicrobium denitrificans ATCC 51888 9388475 YP_003756685.1 CDS Hden_2568 NC_014313.1 2622669 2623670 D KEGG: bbt:BBta_3019 arginine/ornithine transporter ATPase; TIGRFAM: LAO/AO transporter ATPase; PFAM: ArgK protein; LAO/AO transporter ATPase 2622669..2623670 Hyphomicrobium denitrificans ATCC 51888 9388476 YP_003756686.1 CDS Hden_2569 NC_014313.1 2623803 2624363 D PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: xau:Xaut_2489 peptidase C15 pyroglutamyl peptidase I; peptidase C15 pyroglutamyl peptidase I 2623803..2624363 Hyphomicrobium denitrificans ATCC 51888 9388477 YP_003756687.1 CDS Hden_2570 NC_014313.1 2624421 2625776 D KEGG: nha:Nham_2646 nitrous oxidase accessory protein; nitrous oxidase accessory protein 2624421..2625776 Hyphomicrobium denitrificans ATCC 51888 9388478 YP_003756688.1 CDS Hden_2571 NC_014313.1 2626107 2628293 D TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase; HRDC domain protein; KEGG: tgr:Tgr7_1931 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase ; helicase domain protein; HRDC domain protein; ATP-dependent DNA helicase RecQ 2626107..2628293 Hyphomicrobium denitrificans ATCC 51888 9388479 YP_003756689.1 CDS Hden_2572 NC_014313.1 2628265 2628597 R KEGG: met:M446_4527 type IV pilus assembly PilZ; hypothetical protein complement(2628265..2628597) Hyphomicrobium denitrificans ATCC 51888 9388480 YP_003756690.1 CDS Hden_2573 NC_014313.1 2628718 2629425 R TIGRFAM: ATP phosphoribosyltransferase; KEGG: bja:blr7525 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase complement(2628718..2629425) Hyphomicrobium denitrificans ATCC 51888 9388481 YP_003756691.1 CDS Hden_2574 NC_014313.1 2629422 2630600 R PFAM: tRNA synthetase class II (G H P and S); KEGG: pla:Plav_0599 ATP phosphoribosyltransferase regulatory subunit; tRNA synthetase class II (G H P and S) complement(2629422..2630600) Hyphomicrobium denitrificans ATCC 51888 9388482 YP_003756692.1 CDS Hden_2575 NC_014313.1 2630746 2632341 R TIGRFAM: histidyl-tRNA synthetase; KEGG: bra:BRADO6038 histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); anticodon-binding domain protein; histidyl-tRNA synthetase complement(2630746..2632341) Hyphomicrobium denitrificans ATCC 51888 9388483 YP_003756693.1 CDS Hden_2576 NC_014313.1 2632458 2633651 R KEGG: rpb:RPB_2707 hypothetical protein; hypothetical protein complement(2632458..2633651) Hyphomicrobium denitrificans ATCC 51888 9388484 YP_003756694.1 CDS Hden_2577 NC_014313.1 2633814 2634581 R KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; cobalamin 5'-phosphate synthase complement(2633814..2634581) Hyphomicrobium denitrificans ATCC 51888 9388485 YP_003756695.1 CDS Hden_2578 NC_014313.1 2634578 2635618 R TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; KEGG: rpb:RPB_3282 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase complement(2634578..2635618) Hyphomicrobium denitrificans ATCC 51888 9388486 YP_003756696.1 CDS Hden_2579 NC_014313.1 2635615 2636979 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_1761 hypothetical protein; hypothetical protein complement(2635615..2636979) Hyphomicrobium denitrificans ATCC 51888 9388487 YP_003756697.1 CDS Hden_2580 NC_014313.1 2637006 2638184 R PFAM: FAD linked oxidase; KEGG: mno:Mnod_0677 FAD linked oxidase; FAD linked oxidase complement(2637006..2638184) Hyphomicrobium denitrificans ATCC 51888 9388488 YP_003756698.1 CDS Hden_2581 NC_014313.1 2638244 2639716 R KEGG: mno:Mnod_4582 FAD linked oxidase domain protein; PFAM: FAD linked oxidase; D-lactate dehydrogenase (cytochrome) complement(2638244..2639716) Hyphomicrobium denitrificans ATCC 51888 9388489 YP_003756699.1 CDS Hden_2582 NC_014313.1 2640344 2641726 R TIGRFAM: glutamate/cysteine ligase; KEGG: pla:Plav_0658 glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase complement(2640344..2641726) Hyphomicrobium denitrificans ATCC 51888 9388490 YP_003756700.1 CDS Hden_2583 NC_014313.1 2641833 2642579 R PFAM: protein of unknown function DUF558; KEGG: msl:Msil_2902 protein of unknown function DUF558; hypothetical protein complement(2641833..2642579) Hyphomicrobium denitrificans ATCC 51888 9388491 YP_003756701.1 CDS Hden_2584 NC_014313.1 2642694 2643656 D KEGG: pla:Plav_0653 4-hydroxybenzoate polyprenyl transferase; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyl transferase 2642694..2643656 Hyphomicrobium denitrificans ATCC 51888 9388492 YP_003756702.1 CDS Hden_2585 NC_014313.1 2643929 2644207 D KEGG: xau:Xaut_1484 hypothetical protein; hypothetical protein 2643929..2644207 Hyphomicrobium denitrificans ATCC 51888 9388493 YP_003756703.1 CDS Hden_2586 NC_014313.1 2644235 2644972 R PFAM: protein of unknown function DUF442; KEGG: met:M446_2662 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase complement(2644235..2644972) Hyphomicrobium denitrificans ATCC 51888 9388494 YP_003756704.1 CDS Hden_2587 NC_014313.1 2645175 2647178 D PFAM: 3-deoxy-D-manno-octulosonic-acid transferase domain protein; glycosyl transferase group 1; protein of unknown function DUF374; KEGG: bra:BRADO6096 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); 3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 2645175..2647178 Hyphomicrobium denitrificans ATCC 51888 9388495 YP_003756705.1 CDS Hden_2588 NC_014313.1 2647182 2648210 D TIGRFAM: tetraacyldisaccharide 4'-kinase; KEGG: mrd:Mrad2831_0888 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 2647182..2648210 Hyphomicrobium denitrificans ATCC 51888 9388496 YP_003756706.1 CDS Hden_2589 NC_014313.1 2648207 2648443 R PFAM: protein of unknown function DUF2093; KEGG: mes:Meso_0440 hypothetical protein; hypothetical protein complement(2648207..2648443) Hyphomicrobium denitrificans ATCC 51888 9388497 YP_003756707.1 CDS Hden_2590 NC_014313.1 2648556 2650022 R TIGRFAM: exodeoxyribonuclease VII large subunit; KEGG: pla:Plav_0620 exodeoxyribonuclease VII large subunit; PFAM: exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(2648556..2650022) Hyphomicrobium denitrificans ATCC 51888 9388498 YP_003756708.1 CDS Hden_2591 NC_014313.1 2650091 2651365 D TIGRFAM: phosphoribosylamine/glycine ligase; KEGG: rpe:RPE_4612 phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; phosphoribosylglycinamide synthetase, N-domain; phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine/glycine ligase 2650091..2651365 Hyphomicrobium denitrificans ATCC 51888 9388499 YP_003756709.1 CDS Hden_2592 NC_014313.1 2651401 2652402 D PFAM: patatin; KEGG: mlo:mlr8257 hypothetical protein; patatin 2651401..2652402 Hyphomicrobium denitrificans ATCC 51888 9388500 YP_003756710.1 CDS Hden_2593 NC_014313.1 2652543 2652980 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mrd:Mrad2831_0072 CMP/dCMP deaminase zinc-binding; zinc-binding CMP/dCMP deaminase protein complement(2652543..2652980) Hyphomicrobium denitrificans ATCC 51888 9388501 YP_003756711.1 CDS Hden_2594 NC_014313.1 2652981 2653889 D KEGG: rpt:Rpal_1356 RNA-binding S4 domain protein; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 2652981..2653889 Hyphomicrobium denitrificans ATCC 51888 9388502 YP_003756712.1 CDS Hden_2595 NC_014313.1 2653886 2654443 D KEGG: bra:BRADO6080 methyltransferase; TIGRFAM: methyltransferase; PFAM: protein of unknown function methylase; methyltransferase 2653886..2654443 Hyphomicrobium denitrificans ATCC 51888 9388503 YP_003756713.1 CDS Hden_2596 NC_014313.1 2654584 2655540 D KEGG: oan:Oant_2228 hypothetical protein; hypothetical protein 2654584..2655540 Hyphomicrobium denitrificans ATCC 51888 9388504 YP_003756714.1 CDS Hden_2597 NC_014313.1 2655495 2656055 R PFAM: protein of unknown function DUF2239; KEGG: rso:RS03158 hypothetical protein; hypothetical protein complement(2655495..2656055) Hyphomicrobium denitrificans ATCC 51888 9388505 YP_003756715.1 CDS Hden_2598 NC_014313.1 2656130 2657527 R KEGG: xom:XOO_3698 glucose-galactose transporter; TIGRFAM: glucose/galactose transporter; PFAM: major facilitator superfamily MFS_1; glucose/galactose transporter complement(2656130..2657527) Hyphomicrobium denitrificans ATCC 51888 9388506 YP_003756716.1 CDS Hden_2599 NC_014313.1 2657811 2658146 D KEGG: oan:Oant_3625 hypothetical protein; hypothetical protein 2657811..2658146 Hyphomicrobium denitrificans ATCC 51888 9388507 YP_003756717.1 CDS Hden_2600 NC_014313.1 2658287 2658778 D KEGG: atc:AGR_C_5028 bacterioferritin (BFR); TIGRFAM: bacterioferritin; PFAM: ferritin; bacterioferritin 2658287..2658778 Hyphomicrobium denitrificans ATCC 51888 9388508 YP_003756718.1 CDS Hden_2601 NC_014313.1 2659025 2660806 R KEGG: pla:Plav_0293 DNA mismatch repair protein; TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; DNA mismatch repair protein MutL complement(2659025..2660806) Hyphomicrobium denitrificans ATCC 51888 9388509 YP_003756719.1 CDS Hden_2602 NC_014313.1 2660837 2662189 R KEGG: pla:Plav_0292 glucose-6-phosphate isomerase; PFAM: phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase complement(2660837..2662189) Hyphomicrobium denitrificans ATCC 51888 9388510 YP_003756720.1 CDS Hden_2603 NC_014313.1 2662296 2663708 R KEGG: azc:AZC_4243 hypothetical protein; PFAM: peptidase M16 domain protein; processing peptidase complement(2662296..2663708) Hyphomicrobium denitrificans ATCC 51888 9388511 YP_003756721.1 CDS Hden_2604 NC_014313.1 2663713 2665128 R PFAM: peptidase M16 domain protein; KEGG: azc:AZC_4242 protease precursor; peptidase M16 domain-containing protein complement(2663713..2665128) Hyphomicrobium denitrificans ATCC 51888 9388512 YP_003756722.1 CDS Hden_2605 NC_014313.1 2665383 2665856 R KEGG: pzu:PHZ_c3163 hypothetical protein; hypothetical protein complement(2665383..2665856) Hyphomicrobium denitrificans ATCC 51888 9388513 YP_003756723.1 CDS Hden_2606 NC_014313.1 2665923 2666447 R KEGG: pla:Plav_0288 lipoprotein signal peptidase; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase complement(2665923..2666447) Hyphomicrobium denitrificans ATCC 51888 9388514 YP_003756724.1 CDS Hden_2607 NC_014313.1 2666812 2669964 R KEGG: msl:Msil_2860 isoleucyl-tRNA synthetase; TIGRFAM: isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(2666812..2669964) Hyphomicrobium denitrificans ATCC 51888 9388515 YP_003756725.1 CDS Hden_2608 NC_014313.1 2670164 2670274 D KEGG: dpo:Dpse_GA28430 GA28430 gene product from transcript GA28430-RA; hypothetical protein 2670164..2670274 Hyphomicrobium denitrificans ATCC 51888 9388516 YP_003756726.1 CDS Hden_2609 NC_014313.1 2670302 2671228 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; riboflavin kinase; KEGG: rpe:RPE_1410 riboflavin biosynthesis protein RibF; SMART: riboflavin kinase; riboflavin biosynthesis protein RibF complement(2670302..2671228) Hyphomicrobium denitrificans ATCC 51888 9388517 YP_003756727.1 CDS Hden_2610 NC_014313.1 2671287 2671724 R PFAM: MaoC domain protein dehydratase; KEGG: mag:amb0831 acyl dehydratase; MaoC domain-containing protein dehydratase complement(2671287..2671724) Hyphomicrobium denitrificans ATCC 51888 9388518 YP_003756728.1 CDS Hden_2611 NC_014313.1 2671977 2672768 D PFAM: protein of unknown function DUF1013; KEGG: pla:Plav_2090 hypothetical protein; hypothetical protein 2671977..2672768 Hyphomicrobium denitrificans ATCC 51888 9388519 YP_003756729.1 CDS Hden_2612 NC_014313.1 2672778 2674496 R PFAM: sulfate transporter; sulfate transporter/antisigma-factor antagonist STAS; KEGG: mno:Mnod_1556 sulfate transporter; sulfate transporter complement(2672778..2674496) Hyphomicrobium denitrificans ATCC 51888 9388520 YP_003756730.1 CDS Hden_2613 NC_014313.1 2674547 2674849 R PFAM: hypothetical protein; KEGG: mes:Meso_3386 XRE family transcriptional regulator; XRE family transcriptional regulator complement(2674547..2674849) Hyphomicrobium denitrificans ATCC 51888 9388521 YP_003756731.1 CDS Hden_2614 NC_014313.1 2675176 2676801 D PFAM: AMP-dependent synthetase and ligase; KEGG: mlo:mlr7293 acyl-CoA synthetase; AMP-dependent synthetase and ligase 2675176..2676801 Hyphomicrobium denitrificans ATCC 51888 9388522 YP_003756732.1 CDS Hden_2615 NC_014313.1 2676860 2677132 R KEGG: ppd:Ppro_1279 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; hypothetical protein complement(2676860..2677132) Hyphomicrobium denitrificans ATCC 51888 9388523 YP_003756733.1 CDS Hden_2616 NC_014313.1 2677442 2678701 D KEGG: mdi:METDI3470 regulatory protein (nitrile hydratase activator like), GTPase, cobalamin biosynthesis protein (CobW homolog); PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; SMART: cobalamin synthesis CobW domain protein; cobalamin synthesis protein P47K 2677442..2678701 Hyphomicrobium denitrificans ATCC 51888 9388524 YP_003756734.1 CDS Hden_2617 NC_014313.1 2678902 2679882 D PFAM: catalase related subgroup; KEGG: bja:blr6251 hypothetical protein; catalase related subgroup 2678902..2679882 Hyphomicrobium denitrificans ATCC 51888 9388525 YP_003756735.1 CDS Hden_2618 NC_014313.1 2679950 2680456 R PFAM: activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_2192 activator of HSP90 ATPase-like protein; activator of Hsp90 ATPase 1 family protein complement(2679950..2680456) Hyphomicrobium denitrificans ATCC 51888 9388526 YP_003756736.1 CDS Hden_2619 NC_014313.1 2680434 2680790 R KEGG: oca:OCAR_5411 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; ArsR family transcriptional regulator complement(2680434..2680790) Hyphomicrobium denitrificans ATCC 51888 9388527 YP_003756737.1 CDS Hden_2620 NC_014313.1 2681039 2681215 R PFAM: protein of unknown function DUF465; KEGG: atu:Atu3752 hypothetical protein; hypothetical protein complement(2681039..2681215) Hyphomicrobium denitrificans ATCC 51888 9388528 YP_003756738.1 CDS Hden_2621 NC_014313.1 2681468 2681674 D PFAM: protein of unknown function DUF465; KEGG: pla:Plav_2080 hypothetical protein; hypothetical protein 2681468..2681674 Hyphomicrobium denitrificans ATCC 51888 9388529 YP_003756739.1 CDS Hden_2622 NC_014313.1 2681731 2682750 D SMART: beta-lactamase; KEGG: acr:Acry_1612 exonuclease of the beta-lactamase fold involved in RNA processing-like protein; beta-lactamase 2681731..2682750 Hyphomicrobium denitrificans ATCC 51888 9388530 YP_003756740.1 CDS Hden_2623 NC_014313.1 2682753 2684732 D PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: mea:Mex_1p3448 ATP-dependent DNA ligase; ATP dependent DNA ligase 2682753..2684732 Hyphomicrobium denitrificans ATCC 51888 9388531 YP_003756741.1 CDS Hden_2624 NC_014313.1 2685137 2685631 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; KEGG: pla:Plav_2072 phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 2685137..2685631 Hyphomicrobium denitrificans ATCC 51888 9388532 YP_003756742.1 CDS Hden_2625 NC_014313.1 2685628 2686737 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; KEGG: azc:AZC_2414 phosphoribosylaminoimidazole carboxylase ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase, ATPase subunit 2685628..2686737 Hyphomicrobium denitrificans ATCC 51888 9388533 YP_003756743.1 CDS Hden_2626 NC_014313.1 2686939 2687331 D KEGG: rpb:RPB_1445 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; 30S ribosomal protein S21 2686939..2687331 Hyphomicrobium denitrificans ATCC 51888 9388534 YP_003756744.1 CDS Hden_2627 NC_014313.1 2687416 2688234 R KEGG: rce:RC1_1069 hypothetical protein; hypothetical protein complement(2687416..2688234) Hyphomicrobium denitrificans ATCC 51888 9388535 YP_003756745.1 CDS Hden_2628 NC_014313.1 2688299 2689678 R KEGG: bba:Bd3070 hypothetical protein; hypothetical protein complement(2688299..2689678) Hyphomicrobium denitrificans ATCC 51888 9388536 YP_003756746.1 CDS Hden_2629 NC_014313.1 2689798 2691213 R KEGG: rpb:RPB_1437 NAD(P) transhydrogenase, beta subunit; PFAM: NAD(P) transhydrogenase subunit beta; NAD(P)(+) transhydrogenase complement(2689798..2691213) Hyphomicrobium denitrificans ATCC 51888 9388537 YP_003756747.1 CDS Hden_2630 NC_014313.1 2691266 2691820 R KEGG: atc:AGR_L_2917 hypothetical protein; hypothetical protein complement(2691266..2691820) Hyphomicrobium denitrificans ATCC 51888 9388538 YP_003756748.1 CDS Hden_2631 NC_014313.1 2691817 2692245 R KEGG: rle:RL4135 transmembrane NAD(P) transhydrogenase subunit alpha part 2; transmembrane NAD(P) transhydrogenase subunit alpha part 2 complement(2691817..2692245) Hyphomicrobium denitrificans ATCC 51888 9388539 YP_003756749.1 CDS Hden_2632 NC_014313.1 2692350 2693492 R KEGG: azc:AZC_0430 NAD(P)(+) transhydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P)(+) transhydrogenase complement(2692350..2693492) Hyphomicrobium denitrificans ATCC 51888 9388540 YP_003756750.1 CDS Hden_2633 NC_014313.1 2693596 2693739 R PFAM: aa3 type cytochrome C oxidase subunit IV; KEGG: bra:BRADO1195 hypothetical protein; aa3 type cytochrome C oxidase subunit IV complement(2693596..2693739) Hyphomicrobium denitrificans ATCC 51888 9388541 YP_003756751.1 CDS Hden_2634 NC_014313.1 2693911 2695821 R PFAM: K potassium transporter; KEGG: nwi:Nwi_1238 K+ potassium transporter; potassium transporter complement(2693911..2695821) Hyphomicrobium denitrificans ATCC 51888 9388542 YP_003756752.1 CDS Hden_2635 NC_014313.1 2696006 2697853 R KEGG: mes:Meso_2730 PepF/M3 family oligoendopeptidase; TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; oligopeptidase F; oligoendopeptidase, pepF/M3 family complement(2696006..2697853) Hyphomicrobium denitrificans ATCC 51888 9388543 YP_003756753.1 CDS Hden_2636 NC_014313.1 2698203 2699711 D KEGG: pla:Plav_2050 two component, sigma54 specific, Fis family transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; ATPase AAA; Fis family two component sigma-54 specific transcriptional regulator 2698203..2699711 Hyphomicrobium denitrificans ATCC 51888 9388544 YP_003756754.1 CDS Hden_2637 NC_014313.1 2700040 2702004 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_0439 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2700040..2702004 Hyphomicrobium denitrificans ATCC 51888 9388545 YP_003756755.1 CDS Hden_2638 NC_014313.1 2702229 2703773 D PFAM: protein of unknown function DUF882; KEGG: mlo:mll2999 hypothetical protein; hypothetical protein 2702229..2703773 Hyphomicrobium denitrificans ATCC 51888 9388546 YP_003756756.1 CDS Hden_2639 NC_014313.1 2703810 2704739 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: oca:OCAR_4501 hydrogen peroxide-inducible genes activator; LysR family transcriptional regulator complement(2703810..2704739) Hyphomicrobium denitrificans ATCC 51888 9388547 YP_003756757.1 CDS Hden_2640 NC_014313.1 2705040 2705333 R PFAM: protein of unknown function DUF2312; KEGG: rlt:Rleg2_3293 hypothetical protein; hypothetical protein complement(2705040..2705333) Hyphomicrobium denitrificans ATCC 51888 9388548 YP_003756758.1 CDS Hden_2641 NC_014313.1 2705638 2705946 R PFAM: protein of unknown function DUF1244; KEGG: bja:bll7136 hypothetical protein; hypothetical protein complement(2705638..2705946) Hyphomicrobium denitrificans ATCC 51888 9388549 YP_003756759.1 CDS Hden_2642 NC_014313.1 2706130 2707425 D KEGG: oca:OCAR_7443 hydroxypyruvate reductase; PFAM: MOFRL domain protein; hydroxypyruvate reductase 2706130..2707425 Hyphomicrobium denitrificans ATCC 51888 9388550 YP_003756760.1 CDS Hden_2643 NC_014313.1 2707495 2707941 D PFAM: protein of unknown function DUF1036; KEGG: mno:Mnod_5963 protein of unknown function DUF1036; hypothetical protein 2707495..2707941 Hyphomicrobium denitrificans ATCC 51888 9388551 YP_003756761.1 CDS Hden_2644 NC_014313.1 2707938 2709383 D TIGRFAM: pyruvate kinase; KEGG: smd:Smed_2676 pyruvate kinase; PFAM: pyruvate kinase barrel; pyruvate kinase alpha/beta; pyruvate kinase 2707938..2709383 Hyphomicrobium denitrificans ATCC 51888 9388552 YP_003756762.1 CDS Hden_2645 NC_014313.1 2709685 2710404 R KEGG: nwi:Nwi_0984 hypothetical protein; PFAM: hypothetical protein; hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(2709685..2710404) Hyphomicrobium denitrificans ATCC 51888 9388553 YP_003756763.1 CDS Hden_2646 NC_014313.1 2710489 2710614 R KEGG: nwi:Nwi_0983 50S ribosomal protein L36; manually curated; TIGRFAM: ribosomal protein L36; 50S ribosomal protein L36 complement(2710489..2710614) Hyphomicrobium denitrificans ATCC 51888 9388554 YP_003756764.1 CDS Hden_2647 NC_014313.1 2710798 2711184 R manually curated; PFAM: response regulator receiver; KEGG: mes:Meso_2750 response regulator receiver protein; SMART: response regulator receiver; response regulator receiver protein complement(2710798..2711184) Hyphomicrobium denitrificans ATCC 51888 9388556 YP_003756765.1 CDS Hden_2648 NC_014313.1 2711450 2712346 D PFAM: N-formylglutamate amidohydrolase; KEGG: mes:Meso_2749 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 2711450..2712346 Hyphomicrobium denitrificans ATCC 51888 9388557 YP_003756766.1 CDS Hden_2649 NC_014313.1 2712929 2713702 D KEGG: mno:Mnod_1726 histidinol-phosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase; histidinol-phosphate phosphatase 2712929..2713702 Hyphomicrobium denitrificans ATCC 51888 9388558 YP_003756767.1 CDS Hden_2650 NC_014313.1 2713699 2714667 R PFAM: alpha/beta hydrolase fold; KEGG: mno:Mnod_1727 alpha/beta hydrolase fold protein; alpha/beta hydrolase fold protein complement(2713699..2714667) Hyphomicrobium denitrificans ATCC 51888 9388559 YP_003756768.1 CDS Hden_2651 NC_014313.1 2714868 2715320 D PFAM: heat shock protein Hsp20; KEGG: azc:AZC_4265 heat shock protein; heat shock protein Hsp20 2714868..2715320 Hyphomicrobium denitrificans ATCC 51888 9388560 YP_003756769.1 CDS Hden_2652 NC_014313.1 2715921 2720645 D KEGG: bid:Bind_3031 glutamate synthase (ferredoxin); PFAM: glutamate synthase; ferredoxin-dependent glutamate synthase; glutamate synthase subunit alpha domain protein; glutamine amidotransferase class-II; glutamate synthase (ferredoxin) 2715921..2720645 Hyphomicrobium denitrificans ATCC 51888 9388561 YP_003756770.1 CDS Hden_2653 NC_014313.1 2720693 2722132 D KEGG: bbt:BBta_1370 glutamate synthase subunit beta; TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase, NADH/NADPH, small subunit 2720693..2722132 Hyphomicrobium denitrificans ATCC 51888 9388562 YP_003756771.1 CDS Hden_2654 NC_014313.1 2722149 2722982 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: cti:RALTA_B0369 transmembrane protein; hypothetical protein complement(2722149..2722982) Hyphomicrobium denitrificans ATCC 51888 9388563 YP_003756772.1 CDS Hden_2655 NC_014313.1 2723057 2724409 R PFAM: protein of unknown function DUF459; KEGG: msl:Msil_3880 protein of unknown function DUF459; hypothetical protein complement(2723057..2724409) Hyphomicrobium denitrificans ATCC 51888 9388564 YP_003756773.1 CDS Hden_2656 NC_014313.1 2724515 2725768 R KEGG: rpe:RPE_2047 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: peptidoglycan-binding protein; lytic murein transglycosylase complement(2724515..2725768) Hyphomicrobium denitrificans ATCC 51888 9388565 YP_003756774.1 CDS Hden_2657 NC_014313.1 2726038 2726931 D KEGG: xau:Xaut_0389 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 2726038..2726931 Hyphomicrobium denitrificans ATCC 51888 9388566 YP_003756775.1 CDS Hden_2658 NC_014313.1 2726938 2728605 R PFAM: protein of unknown function DUF2320; KEGG: rpa:RPA0880 hypothetical protein; hypothetical protein complement(2726938..2728605) Hyphomicrobium denitrificans ATCC 51888 9388567 YP_003756776.1 CDS Hden_2659 NC_014313.1 2728810 2729841 D SMART: CBS domain containing protein; TIGRFAM: KpsF/GutQ family protein; KEGG: oan:Oant_4269 KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); CBS domain containing protein; KpsF/GutQ family protein 2728810..2729841 Hyphomicrobium denitrificans ATCC 51888 9388568 YP_003756777.1 CDS Hden_2660 NC_014313.1 2729875 2730936 R TIGRFAM: ferrochelatase; KEGG: mch:Mchl_1748 ferrochelatase; PFAM: ferrochelatase; ferrochelatase complement(2729875..2730936) Hyphomicrobium denitrificans ATCC 51888 9388569 YP_003756778.1 CDS Hden_2661 NC_014313.1 2730976 2732025 R KEGG: csa:Csal_2889 hypothetical protein; PFAM: CHAD domain containing protein; SMART: CHAD domain containing protein; CHAD domain containing protein complement(2730976..2732025) Hyphomicrobium denitrificans ATCC 51888 9388570 YP_003756779.1 CDS Hden_2662 NC_014313.1 2732123 2732737 R KEGG: smd:Smed_4170 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2732123..2732737) Hyphomicrobium denitrificans ATCC 51888 9388571 YP_003756780.1 CDS Hden_2663 NC_014313.1 2732754 2733587 R PFAM: thiazole biosynthesis protein; KEGG: rpd:RPD_3430 thiazole synthase; thiazole biosynthesis protein complement(2732754..2733587) Hyphomicrobium denitrificans ATCC 51888 9388572 YP_003756781.1 CDS Hden_2664 NC_014313.1 2733588 2733806 R KEGG: rde:RD1_0748 thiamine biosynthesis protein ThiS, TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS complement(2733588..2733806) Hyphomicrobium denitrificans ATCC 51888 9388573 YP_003756782.1 CDS Hden_2665 NC_014313.1 2733978 2737424 D KEGG: bja:bll2324 acylglycerophosphoethanolamine acyltransferase; PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; AMP-dependent synthetase and ligase 2733978..2737424 Hyphomicrobium denitrificans ATCC 51888 9388574 YP_003756783.1 CDS Hden_2666 NC_014313.1 2737377 2738384 R PFAM: FAD dependent oxidoreductase; KEGG: nwi:Nwi_2464 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(2737377..2738384) Hyphomicrobium denitrificans ATCC 51888 9388575 YP_003756784.1 CDS Hden_2667 NC_014313.1 2738416 2740161 R KEGG: bpt:Bpet0836 hypothetical protein; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase complement(2738416..2740161) Hyphomicrobium denitrificans ATCC 51888 9388576 YP_003756785.1 CDS Hden_2668 NC_014313.1 2740261 2740707 D PFAM: cupin; KEGG: rpc:RPC_2157 cupin 2, barrel; cupin 2740261..2740707 Hyphomicrobium denitrificans ATCC 51888 9388577 YP_003756786.1 CDS Hden_2669 NC_014313.1 2741098 2742168 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3215 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 2741098..2742168 Hyphomicrobium denitrificans ATCC 51888 9388578 YP_003756787.1 CDS Hden_2670 NC_014313.1 2742342 2743301 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: lipoic acid synthetase; KEGG: cak:Caul_2751 lipoyl synthase; PFAM: radical SAM domain protein; lipoic acid synthetase 2742342..2743301 Hyphomicrobium denitrificans ATCC 51888 9388579 YP_003756788.1 CDS Hden_2671 NC_014313.1 2743332 2744120 D TIGRFAM: hydroxypyruvate isomerase; KEGG: bja:blr3167 hydroxypyruvate isomerase protein; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 2743332..2744120 Hyphomicrobium denitrificans ATCC 51888 9388580 YP_003756789.1 CDS Hden_2672 NC_014313.1 2744134 2745066 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: nmu:Nmul_A1739 transcriptional regulator CysB-like protein; LysR family transcriptional regulator complement(2744134..2745066) Hyphomicrobium denitrificans ATCC 51888 9388581 YP_003756790.1 CDS Hden_2673 NC_014313.1 2745063 2746157 R TIGRFAM: sulfate ABC transporter ATPase; PFAM: ABC transporter; KEGG: tmz:Tmz1t_0622 sulfate ABC transporter ATPase subunit; SMART: ATPase AAA; sulfate ABC transporter ATPase complement(2745063..2746157) Hyphomicrobium denitrificans ATCC 51888 9388582 YP_003756791.1 CDS Hden_2674 NC_014313.1 2746154 2747047 R KEGG: tmz:Tmz1t_0623 sulfate ABC transporter inner membrane subunit CysW; TIGRFAM: sulfate ABC transporter inner membrane subunit CysW; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transporters inner membrane component; sulfate ABC transporter inner membrane subunit CysW complement(2746154..2747047) Hyphomicrobium denitrificans ATCC 51888 9388583 YP_003756792.1 CDS Hden_2675 NC_014313.1 2747047 2747883 R KEGG: azo:azo1335 sulfate transporter permease; TIGRFAM: sulfate ABC transporter inner membrane subunit CysT; sulfate ABC transporter inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; sulfate ABC transporter inner membrane subunit CysT complement(2747047..2747883) Hyphomicrobium denitrificans ATCC 51888 9388584 YP_003756793.1 CDS Hden_2676 NC_014313.1 2748023 2748664 R KEGG: nwi:Nwi_0662 XRE family transcriptional regulator; PFAM: hypothetical protein; Cupin 2 conserved barrel domain protein; SMART: hypothetical protein; XRE family transcriptional regulator complement(2748023..2748664) Hyphomicrobium denitrificans ATCC 51888 9388585 YP_003756794.1 CDS Hden_2677 NC_014313.1 2748955 2750286 R KEGG: oca:OCAR_4436 hypothetical protein; hypothetical protein complement(2748955..2750286) Hyphomicrobium denitrificans ATCC 51888 9388586 YP_003756795.1 CDS Hden_2678 NC_014313.1 2750556 2751218 R KEGG: azo:azo2398 hypothetical protein; manually curated; PFAM: protein of unknown function DUF1234; hypothetical protein complement(2750556..2751218) Hyphomicrobium denitrificans ATCC 51888 9388587 YP_003756796.1 CDS Hden_2679 NC_014313.1 2751393 2752436 R KEGG: azo:azo2363 periplasmic sulfate-binding protein; TIGRFAM: sulfate ABC transporter periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; sulfate ABC transporter periplasmic sulfate-binding protein complement(2751393..2752436) Hyphomicrobium denitrificans ATCC 51888 9388588 YP_003756797.1 CDS Hden_2680 NC_014313.1 2752709 2753284 R KEGG: hch:HCH_00655 hypothetical protein; hypothetical protein complement(2752709..2753284) Hyphomicrobium denitrificans ATCC 51888 9388589 YP_003756798.1 CDS Hden_2681 NC_014313.1 2753316 2754572 R PFAM: protein of unknown function DUF214; KEGG: rde:RD1_1737 peptide ABC transporter permease; hypothetical protein complement(2753316..2754572) Hyphomicrobium denitrificans ATCC 51888 9388590 YP_003756799.1 CDS Hden_2682 NC_014313.1 2754569 2755330 R KEGG: pen:PSEEN0581 ABC transporter ATP binding component; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(2754569..2755330) Hyphomicrobium denitrificans ATCC 51888 9388591 YP_003756800.1 CDS Hden_2683 NC_014313.1 2755334 2755906 R KEGG: rde:RD1_1739 hypothetical protein; hypothetical protein complement(2755334..2755906) Hyphomicrobium denitrificans ATCC 51888 9388592 YP_003756801.1 CDS Hden_2684 NC_014313.1 2756059 2756442 R KEGG: rpb:RPB_4191 hypothetical protein; hypothetical protein complement(2756059..2756442) Hyphomicrobium denitrificans ATCC 51888 9388593 YP_003756802.1 CDS Hden_2685 NC_014313.1 2756746 2758704 D KEGG: mpo:Mpop_0172 signal transduction histidine kinase; PFAM: HWE histidine kinase; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; signal transduction histidine kinase 2756746..2758704 Hyphomicrobium denitrificans ATCC 51888 9388594 YP_003756803.1 CDS Hden_2686 NC_014313.1 2758995 2759168 D PFAM: protein of unknown function DUF1328; KEGG: msl:Msil_0245 protein of unknown function DUF1328; hypothetical protein 2758995..2759168 Hyphomicrobium denitrificans ATCC 51888 9388595 YP_003756804.1 CDS Hden_2687 NC_014313.1 2759259 2760065 R KEGG: rpe:RPE_1751 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver; ECF subfamily RNA polymerase sigma-24 subunit complement(2759259..2760065) Hyphomicrobium denitrificans ATCC 51888 9388596 YP_003756805.1 CDS Hden_2688 NC_014313.1 2760138 2760701 R KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit complement(2760138..2760701) Hyphomicrobium denitrificans ATCC 51888 9388597 YP_003756806.1 CDS Hden_2689 NC_014313.1 2760698 2760955 R KEGG: msl:Msil_0285 hypothetical protein; hypothetical protein complement(2760698..2760955) Hyphomicrobium denitrificans ATCC 51888 9388598 YP_003756807.1 CDS Hden_2690 NC_014313.1 2761086 2762408 R KEGG: rpe:RPE_2218 cobyrinic acid a,c-diamide synthase; TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid a,c-diamide synthase complement(2761086..2762408) Hyphomicrobium denitrificans ATCC 51888 9388599 YP_003756808.1 CDS Hden_2691 NC_014313.1 2762422 2763177 R TIGRFAM: precorrin-4 C11-methyltransferase; KEGG: bbt:BBta_3152 precorrin-4 C11-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C11-methyltransferase complement(2762422..2763177) Hyphomicrobium denitrificans ATCC 51888 9388600 YP_003756809.1 CDS Hden_2692 NC_014313.1 2763174 2763557 R KEGG: rsh:Rsph17029_1474 precorrin methylase; precorrin methylase complement(2763174..2763557) Hyphomicrobium denitrificans ATCC 51888 9388601 YP_003756810.1 CDS Hden_2693 NC_014313.1 2763554 2764777 R TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: met:M446_2444 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6y C5,15-methyltransferase subunit CbiE complement(2763554..2764777) Hyphomicrobium denitrificans ATCC 51888 9388602 YP_003756811.1 CDS Hden_2694 NC_014313.1 2764795 2765580 D TIGRFAM: precorrin-6x reductase; KEGG: rpc:RPC_1885 cobalt-precorrin-6x reductase; PFAM: precorrin-6x reductase CbiJ/CobK; precorrin-6x reductase 2764795..2765580 Hyphomicrobium denitrificans ATCC 51888 9388603 YP_003756812.1 CDS Hden_2695 NC_014313.1 2765550 2766308 R KEGG: bid:Bind_3511 precorrin-3B C17-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-3B C17-methyltransferase complement(2765550..2766308) Hyphomicrobium denitrificans ATCC 51888 9388604 YP_003756813.1 CDS Hden_2696 NC_014313.1 2766305 2767048 R KEGG: gbe:GbCGDNIH1_0661 precorrin-2 C20-methyltransferase; TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-2 C20-methyltransferase complement(2766305..2767048) Hyphomicrobium denitrificans ATCC 51888 9388605 YP_003756814.1 CDS Hden_2697 NC_014313.1 2767045 2767686 R KEGG: mno:Mnod_2151 precorrin-8X methylmutase CbiC/CobH; PFAM: precorrin-8X methylmutase CbiC/CobH; precorrin-8X methylmutase complement(2767045..2767686) Hyphomicrobium denitrificans ATCC 51888 9388606 YP_003756815.1 CDS Hden_2698 NC_014313.1 2767683 2768960 R KEGG: bid:Bind_3508 precorrin-3B synthase; TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; precorrin-3B synthase complement(2767683..2768960) Hyphomicrobium denitrificans ATCC 51888 9388607 YP_003756816.1 CDS Hden_2699 NC_014313.1 2768957 2772220 R TIGRFAM: cobalt chelatase subunit CobN; KEGG: rpc:RPC_1889 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase; cobalt chelatase subunit CobN complement(2768957..2772220) Hyphomicrobium denitrificans ATCC 51888 9388608 YP_003756817.1 CDS Hden_2700 NC_014313.1 2772220 2773257 R TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: bra:BRADO4908 cobalamin synthesis protein CobW; SMART: cobalamin synthesis CobW domain protein; cobalamin biosynthesis protein CobW complement(2772220..2773257) Hyphomicrobium denitrificans ATCC 51888 9388609 YP_003756818.1 CDS Hden_2701 NC_014313.1 2773657 2774181 D KEGG: met:M446_2430 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 2773657..2774181 Hyphomicrobium denitrificans ATCC 51888 9388610 YP_003756819.1 CDS Hden_2702 NC_014313.1 2774184 2774804 D TIGRFAM: cob(I)alamin adenosyltransferase; KEGG: mno:Mnod_2143 cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2774184..2774804 Hyphomicrobium denitrificans ATCC 51888 9388611 YP_003756820.1 CDS Hden_2703 NC_014313.1 2774974 2776446 D KEGG: mno:Mnod_2141 cobyric acid synthase CobQ; TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; cobyrinic acid ac-diamide synthase; cobyric acid synthase CobQ 2774974..2776446 Hyphomicrobium denitrificans ATCC 51888 9388612 YP_003756821.1 CDS Hden_2704 NC_014313.1 2776430 2777404 R KEGG: mch:Mchl_5724 cobalamin biosynthesis protein CobD; TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; cobalamin biosynthesis protein CobD complement(2776430..2777404) Hyphomicrobium denitrificans ATCC 51888 9388613 YP_003756822.1 CDS Hden_2705 NC_014313.1 2777450 2778853 R KEGG: met:M446_3750 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; cob(II)yrinic acid a,c-diamide reductase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; nitroreductase; uroporphyrin-III C-methyltransferase complement(2777450..2778853) Hyphomicrobium denitrificans ATCC 51888 9388614 YP_003756823.1 CDS Hden_2706 NC_014313.1 2779201 2780034 R KEGG: ana:all0384 hypothetical protein; PFAM: Rhodanese domain protein; SMART: rhodanese; rhodanese complement(2779201..2780034) Hyphomicrobium denitrificans ATCC 51888 9388615 YP_003756824.1 CDS Hden_2707 NC_014313.1 2780086 2782035 R PFAM: acyltransferase 3; KEGG: swi:Swit_4615 acyltransferase 3; acyltransferase 3 complement(2780086..2782035) Hyphomicrobium denitrificans ATCC 51888 9388616 YP_003756825.1 CDS Hden_2708 NC_014313.1 2782336 2782557 R PFAM: protein of unknown function DUF329; KEGG: xau:Xaut_2724 hypothetical protein; hypothetical protein complement(2782336..2782557) Hyphomicrobium denitrificans ATCC 51888 9388618 YP_003756826.1 CDS Hden_2709 NC_014313.1 2782571 2783320 R KEGG: rpt:Rpal_5018 Maf-like protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein complement(2782571..2783320) Hyphomicrobium denitrificans ATCC 51888 9388619 YP_003756827.1 CDS Hden_2710 NC_014313.1 2783464 2784183 D KEGG: Crp/Fnr family transcriptional regulator; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator 2783464..2784183 Hyphomicrobium denitrificans ATCC 51888 9388620 YP_003756828.1 CDS Hden_2711 NC_014313.1 2784220 2785548 D KEGG: mbt:JTY_1638 membrane-anchored adenylyl cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; adenylate/guanylate cyclase 2784220..2785548 Hyphomicrobium denitrificans ATCC 51888 9388621 YP_003756829.1 CDS Hden_2712 NC_014313.1 2785531 2786025 R PFAM: conserved hypothetical protein; KEGG: azc:AZC_3148 hypothetical protein; hypothetical protein complement(2785531..2786025) Hyphomicrobium denitrificans ATCC 51888 9388622 YP_003756830.1 CDS Hden_2713 NC_014313.1 2786032 2787330 R TIGRFAM: histidinol dehydrogenase; KEGG: mes:Meso_0190 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase; histidinol dehydrogenase complement(2786032..2787330) Hyphomicrobium denitrificans ATCC 51888 9388623 YP_003756831.1 CDS Hden_2714 NC_014313.1 2787366 2787833 R manually curated; KEGG: mno:Mnod_4928 hypothetical protein; hypothetical protein complement(2787366..2787833) Hyphomicrobium denitrificans ATCC 51888 9388624 YP_003756832.1 CDS Hden_2715 NC_014313.1 2787948 2789240 R KEGG: azc:AZC_3151 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2787948..2789240) Hyphomicrobium denitrificans ATCC 51888 9388625 YP_003756833.1 CDS Hden_2716 NC_014313.1 2789903 2791057 R PFAM: patatin; KEGG: aeh:Mlg_1761 patatin; patatin complement(2789903..2791057) Hyphomicrobium denitrificans ATCC 51888 9388627 YP_003756834.1 CDS Hden_2717 NC_014313.1 2791439 2792809 D TIGRFAM: magnesium transporter; PFAM: MgtE integral membrane region; MgtE intracellular region; CBS domain containing protein; KEGG: mrd:Mrad2831_5457 magnesium transporter; SMART: CBS domain containing protein; magnesium transporter 2791439..2792809 Hyphomicrobium denitrificans ATCC 51888 9388628 YP_003756835.1 CDS Hden_2718 NC_014313.1 2793112 2794257 D KEGG: msl:Msil_2464 efflux transporter RND family, MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 2793112..2794257 Hyphomicrobium denitrificans ATCC 51888 9388629 YP_003756836.1 CDS Hden_2719 NC_014313.1 2794285 2797464 D KEGG: msl:Msil_2463 transporter hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 2794285..2797464 Hyphomicrobium denitrificans ATCC 51888 9388630 YP_003756837.1 CDS Hden_2720 NC_014313.1 2797593 2798186 D TIGRFAM: GTP cyclohydrolase I; KEGG: oca:OCAR_4254 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/nitrile oxidoreductase; GTP cyclohydrolase I 2797593..2798186 Hyphomicrobium denitrificans ATCC 51888 9388631 YP_003756838.1 CDS Hden_2721 NC_014313.1 2798200 2798940 R KEGG: azc:AZC_0796 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A complement(2798200..2798940) Hyphomicrobium denitrificans ATCC 51888 9388632 YP_003756839.1 CDS Hden_2722 NC_014313.1 2798998 2799435 R KEGG: cpi:Cpin_7250 KWG Leptospira repeat protein; hypothetical protein complement(2798998..2799435) Hyphomicrobium denitrificans ATCC 51888 9388633 YP_003756840.1 CDS Hden_2723 NC_014313.1 2799539 2800465 R KEGG: avi:Avi_0541 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase complement(2799539..2800465) Hyphomicrobium denitrificans ATCC 51888 9388634 YP_003756841.1 CDS Hden_2724 NC_014313.1 2800544 2801059 R KEGG: mes:Meso_0394 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(2800544..2801059) Hyphomicrobium denitrificans ATCC 51888 9388635 YP_003756842.1 CDS Hden_2725 NC_014313.1 2801091 2802065 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: met:M446_0034 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2801091..2802065) Hyphomicrobium denitrificans ATCC 51888 9388636 YP_003756843.1 CDS Hden_2726 NC_014313.1 2802104 2803501 R KEGG: slo:Shew_1492 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; MATE efflux family protein complement(2802104..2803501) Hyphomicrobium denitrificans ATCC 51888 9388637 YP_003756844.1 CDS Hden_2727 NC_014313.1 2803556 2804161 R SMART: Toprim sub domain protein; manually curated; TIGRFAM: recombination protein RecR; KEGG: bhe:BH02300 recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; recombination protein RecR complement(2803556..2804161) Hyphomicrobium denitrificans ATCC 51888 9388638 YP_003756845.1 CDS Hden_2728 NC_014313.1 2804281 2804601 R PFAM: conserved hypothetical protein; KEGG: azc:AZC_0144 hypothetical protein; hypothetical protein complement(2804281..2804601) Hyphomicrobium denitrificans ATCC 51888 9388639 YP_003756846.1 CDS Hden_2729 NC_014313.1 2804640 2806493 R TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: ATPase AAA; KEGG: mno:Mnod_4752 DNA polymerase III subunits gamma and tau; SMART: ATPase AAA; DNA polymerase III subunits gamma and tau complement(2804640..2806493) Hyphomicrobium denitrificans ATCC 51888 9388640 YP_003756847.1 CDS Hden_2730 NC_014313.1 2807052 2807804 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr6518 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(2807052..2807804) Hyphomicrobium denitrificans ATCC 51888 9388642 YP_003756848.1 CDS Hden_2731 NC_014313.1 2807810 2808721 R KEGG: bja:bll1421 prephenate dehydratase; PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; prephenate dehydratase complement(2807810..2808721) Hyphomicrobium denitrificans ATCC 51888 9388643 YP_003756849.1 CDS Hden_2732 NC_014313.1 2808776 2809528 R TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: azc:AZC_0137 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(2808776..2809528) Hyphomicrobium denitrificans ATCC 51888 9388644 YP_003756850.1 CDS Hden_2733 NC_014313.1 2809698 2810267 D PFAM: cytochrome C class I; KEGG: azc:AZC_0136 cytochrome c; cytochrome C class I 2809698..2810267 Hyphomicrobium denitrificans ATCC 51888 9388645 YP_003756851.1 CDS Hden_2734 NC_014313.1 2810412 2812349 D PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_0249 extracellular solute-binding protein; family 5 extracellular solute-binding protein 2810412..2812349 Hyphomicrobium denitrificans ATCC 51888 9388646 YP_003756852.1 CDS Hden_2735 NC_014313.1 2812354 2814258 D PFAM: extracellular solute-binding protein family 5; KEGG: pla:Plav_0248 extracellular solute-binding protein; family 5 extracellular solute-binding protein 2812354..2814258 Hyphomicrobium denitrificans ATCC 51888 9388647 YP_003756853.1 CDS Hden_2736 NC_014313.1 2814258 2815379 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: rpb:RPB_1772 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 2814258..2815379 Hyphomicrobium denitrificans ATCC 51888 9388648 YP_003756854.1 CDS Hden_2737 NC_014313.1 2815385 2816596 D PFAM: binding-protein-dependent transporters inner membrane component; KEGG: mno:Mnod_4147 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transporters inner membrane component 2815385..2816596 Hyphomicrobium denitrificans ATCC 51888 9388649 YP_003756855.1 CDS Hden_2738 NC_014313.1 2816596 2818227 D KEGG: rlg:Rleg_4449 ABC transporter; PFAM: ABC transporter related; oligopeptide/dipeptide ABC transporter domain protein; SMART: ATPase AAA; ABC transporter 2816596..2818227 Hyphomicrobium denitrificans ATCC 51888 9388650 YP_003756856.1 CDS Hden_2739 NC_014313.1 2818386 2820194 D PFAM: OmpA/MotB domain protein; KEGG: met:M446_0695 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 2818386..2820194 Hyphomicrobium denitrificans ATCC 51888 9388651 YP_003756857.1 CDS Hden_2740 NC_014313.1 2820249 2821976 D PFAM: saccharopine dehydrogenase; KEGG: mpo:Mpop_5049 saccharopine dehydrogenase; saccharopine dehydrogenase 2820249..2821976 Hyphomicrobium denitrificans ATCC 51888 9388652 YP_003756858.1 CDS Hden_2741 NC_014313.1 2821985 2822731 R KEGG: rlg:Rleg_6820 nuclease (SNase domain protein); PFAM: nuclease (SNase domain protein); SMART: nuclease (SNase domain protein); nuclease complement(2821985..2822731) Hyphomicrobium denitrificans ATCC 51888 9388653 YP_003756859.1 CDS Hden_2742 NC_014313.1 2822821 2823594 R PFAM: pentapeptide repeat protein; KEGG: gbe:GbCGDNIH1_1873 pentapeptide repeat-containing protein; pentapeptide repeat protein complement(2822821..2823594) Hyphomicrobium denitrificans ATCC 51888 9388654 YP_003756860.1 CDS Hden_2743 NC_014313.1 2823697 2826033 D PFAM: AsmA family protein; KEGG: pla:Plav_0552 AsmA family protein; AsmA family protein 2823697..2826033 Hyphomicrobium denitrificans ATCC 51888 9388655 YP_003756861.1 CDS Hden_2744 NC_014313.1 2826309 2826863 D PFAM: S-adenosylmethionine decarboxylase related; KEGG: pla:Plav_0582 S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase-like protein 2826309..2826863 Hyphomicrobium denitrificans ATCC 51888 9388656 YP_003756862.1 CDS Hden_2745 NC_014313.1 2827094 2827516 R PFAM: Domain of unknown function DUF1801; KEGG: mes:Meso_0627 hypothetical protein; hypothetical protein complement(2827094..2827516) Hyphomicrobium denitrificans ATCC 51888 9388657 YP_003756863.1 CDS Hden_2746 NC_014313.1 2827552 2828997 R KEGG: nwi:Nwi_2148 EmrB/QacA family drug resistance transporter; TIGRFAM: drug resistance transporter EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA subfamily drug resistance transporter complement(2827552..2828997) Hyphomicrobium denitrificans ATCC 51888 9388658 YP_003756864.1 CDS Hden_2747 NC_014313.1 2829270 2831216 D KEGG: mpo:Mpop_2031 coenzyme A transferase; PFAM: coenzyme A transferase; SMART: coenzyme A transferase; coenzyme A transferase 2829270..2831216 Hyphomicrobium denitrificans ATCC 51888 9388659 YP_003756865.1 CDS Hden_2748 NC_014313.1 2831377 2832378 D PFAM: cytochrome C class I; KEGG: bmr:BMI_II348 cytochrome c family protein; cytochrome C class I 2831377..2832378 Hyphomicrobium denitrificans ATCC 51888 9388660 YP_003756866.1 CDS Hden_2749 NC_014313.1 2832388 2833926 R PFAM: ATPase-like, ParA/MinD; protein of unknown function DUF971; protein of unknown function DUF59; KEGG: mlo:mlr5402 ATP/GTP-binding-like protein; ATPase-like, ParA/MinD complement(2832388..2833926) Hyphomicrobium denitrificans ATCC 51888 9388661 YP_003756867.1 CDS Hden_2750 NC_014313.1 2834094 2834717 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: mlo:mlr0547 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 2834094..2834717 Hyphomicrobium denitrificans ATCC 51888 9388662 YP_003756868.1 CDS Hden_2751 NC_014313.1 2834741 2835295 D KEGG: avi:Avi_2069 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B 2834741..2835295 Hyphomicrobium denitrificans ATCC 51888 9388663 YP_003756869.1 CDS Hden_2752 NC_014313.1 2835368 2836417 D TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis protein; radical SAM domain protein; KEGG: avi:Avi_2072 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 2835368..2836417 Hyphomicrobium denitrificans ATCC 51888 9388664 YP_003756870.1 CDS Hden_2753 NC_014313.1 2836437 2836799 R KEGG: rpc:RPC_4869 response regulator receiver domain-containing protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(2836437..2836799) Hyphomicrobium denitrificans ATCC 51888 9388665 YP_003756871.1 CDS Hden_2754 NC_014313.1 2836837 2837379 R TIGRFAM: hypoxanthine phosphoribosyltransferase; KEGG: xau:Xaut_0023 hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(2836837..2837379) Hyphomicrobium denitrificans ATCC 51888 9388666 YP_003756872.1 CDS Hden_2755 NC_014313.1 2837547 2838203 D TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; KEGG: azc:AZC_4611 cell division ATP-binding protein; SMART: ATPase AAA; cell division ATP-binding protein FtsE 2837547..2838203 Hyphomicrobium denitrificans ATCC 51888 9388667 YP_003756873.1 CDS Hden_2756 NC_014313.1 2838187 2839305 D KEGG: rpe:RPE_4831 hypothetical protein; cell division protein-like protein 2838187..2839305 Hyphomicrobium denitrificans ATCC 51888 9388668 YP_003756874.1 CDS Hden_2757 NC_014313.1 2839461 2840105 D PFAM: protein of unknown function DUF218; KEGG: azc:AZC_4613 hypothetical protein; hypothetical protein 2839461..2840105 Hyphomicrobium denitrificans ATCC 51888 9388669 YP_003756875.1 CDS Hden_2758 NC_014313.1 2840098 2840895 D KEGG: rpb:RPB_0837 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2840098..2840895 Hyphomicrobium denitrificans ATCC 51888 9388670 YP_003756876.1 CDS Hden_2759 NC_014313.1 2840921 2841241 R PFAM: small multidrug resistance protein; KEGG: gau:GAU_0989 quaternary ammonium compound-resistance protein; small multidrug resistance protein complement(2840921..2841241) Hyphomicrobium denitrificans ATCC 51888 9388671 YP_003756877.1 CDS Hden_2760 NC_014313.1 2841486 2843915 D KEGG: dsh:Dshi_2949 vitamin B12-dependent ribonucleotide reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 2841486..2843915 Hyphomicrobium denitrificans ATCC 51888 9388672 YP_003756878.1 CDS Hden_2761 NC_014313.1 2844227 2844652 D KEGG: met:M446_0951 hypothetical protein; hypothetical protein 2844227..2844652 Hyphomicrobium denitrificans ATCC 51888 9388673 YP_003756879.1 CDS Hden_2762 NC_014313.1 2844679 2845608 R KEGG: pla:Plav_1584 prephenate dehydrogenase; PFAM: prephenate dehydrogenase; prephenate dehydrogenase complement(2844679..2845608) Hyphomicrobium denitrificans ATCC 51888 9388674 YP_003756880.1 CDS Hden_2763 NC_014313.1 2845641 2846744 R KEGG: met:M446_5257 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; histidinol-phosphate aminotransferase complement(2845641..2846744) Hyphomicrobium denitrificans ATCC 51888 9388675 YP_003756881.1 CDS Hden_2764 NC_014313.1 2846891 2848093 D TIGRFAM: homoserine O-acetyltransferase; KEGG: mlo:mlr3538 homoserine O-acetyltransferase; PFAM: alpha/beta hydrolase fold; homoserine O-acetyltransferase 2846891..2848093 Hyphomicrobium denitrificans ATCC 51888 9388676 YP_003756882.1 CDS Hden_2765 NC_014313.1 2848090 2848743 D KEGG: nwi:Nwi_0586 methionine biosynthesis MetW; TIGRFAM: methionine biosynthesis protein MetW; PFAM: methionine biosynthesis MetW protein; methionine biosynthesis protein MetW 2848090..2848743 Hyphomicrobium denitrificans ATCC 51888 9388677 YP_003756883.1 CDS Hden_2766 NC_014313.1 2848806 2849543 R PFAM: methyltransferase type 11; KEGG: bid:Bind_0431 methyltransferase type 11; type 11 methyltransferase complement(2848806..2849543) Hyphomicrobium denitrificans ATCC 51888 9388678 YP_003756884.1 CDS Hden_2767 NC_014313.1 2849667 2850467 D TIGRFAM: hydroxyacylglutathione hydrolase; KEGG: rhi:NGR_c27100 glyoxalase II; SMART: beta-lactamase; hydroxyacylglutathione hydrolase 2849667..2850467 Hyphomicrobium denitrificans ATCC 51888 9388679 YP_003756885.1 CDS Hden_2768 NC_014313.1 2850488 2850922 D PFAM: protein of unknown function DUF985; KEGG: mrd:Mrad2831_5124 hypothetical protein; hypothetical protein 2850488..2850922 Hyphomicrobium denitrificans ATCC 51888 9388680 YP_003756886.1 CDS Hden_2769 NC_014313.1 2851133 2853103 D PFAM: protein of unknown function DUF88; KEGG: dvm:DvMF_3051 protein of unknown function DUF88; hypothetical protein 2851133..2853103 Hyphomicrobium denitrificans ATCC 51888 9388681 YP_003756887.1 CDS Hden_2770 NC_014313.1 2853202 2853927 R KEGG: rhi:NGR_c32710 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR; acetoacetyl-CoA reductase complement(2853202..2853927) Hyphomicrobium denitrificans ATCC 51888 9388682 YP_003756888.1 CDS Hden_2771 NC_014313.1 2854014 2855204 R TIGRFAM: acetyl-CoA acetyltransferase; KEGG: nwi:Nwi_3060 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(2854014..2855204) Hyphomicrobium denitrificans ATCC 51888 9388683 YP_003756889.1 CDS Hden_2772 NC_014313.1 2855477 2856133 D KEGG: bid:Bind_0428 polyhydroxyalkonate synthesis repressor, PhaR; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHA accumulation regulator DNA-binding protein; PHB accumulation regulatory domain protein; polyhydroxyalkonate synthesis repressor PhaR 2855477..2856133 Hyphomicrobium denitrificans ATCC 51888 9388684 YP_003756890.1 CDS Hden_2773 NC_014313.1 2856166 2857923 R TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; KEGG: pla:Plav_1571 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase complement(2856166..2857923) Hyphomicrobium denitrificans ATCC 51888 9388685 YP_003756891.1 CDS Hden_2774 NC_014313.1 2858106 2858510 R KEGG: ret:RHE_CH04016 hypothetical protein; hypothetical protein complement(2858106..2858510) Hyphomicrobium denitrificans ATCC 51888 9388686 YP_003756892.1 CDS Hden_2775 NC_014313.1 2858659 2858844 R KEGG: mmr:Mmar10_1411 50S ribosomal protein L32P; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; 50S ribosomal protein L32 complement(2858659..2858844) Hyphomicrobium denitrificans ATCC 51888 9388687 YP_003756893.1 CDS Hden_2776 NC_014313.1 2859048 2860406 R KEGG: met:M446_6644 monofunctional biosynthetic peptidoglycan transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; monofunctional biosynthetic peptidoglycan transglycosylase complement(2859048..2860406) Hyphomicrobium denitrificans ATCC 51888 9388688 YP_003756894.1 CDS Hden_2777 NC_014313.1 2860461 2861366 D PFAM: polyprenyl synthetase; KEGG: mch:Mchl_2752 polyprenyl synthetase; polyprenyl synthetase 2860461..2861366 Hyphomicrobium denitrificans ATCC 51888 9388689 YP_003756895.1 CDS Hden_2778 NC_014313.1 2861393 2862049 R KEGG: rpb:RPB_2145 outer membrane protein; manually curated; PFAM: porin; porin complement(2861393..2862049) Hyphomicrobium denitrificans ATCC 51888 9388690 YP_003756896.1 CDS Hden_2779 NC_014313.1 2862248 2863570 R PFAM: flavin-containing monooxygenase FMO; KEGG: cyt:cce_3763 flavin-binding family monooxygenase; flavin-containing monooxygenase FMO complement(2862248..2863570) Hyphomicrobium denitrificans ATCC 51888 9388691 YP_003756897.1 CDS Hden_2780 NC_014313.1 2863798 2865063 R KEGG: nha:Nham_0620 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase complement(2863798..2865063) Hyphomicrobium denitrificans ATCC 51888 9388692 YP_003756898.1 CDS Hden_2781 NC_014313.1 2865097 2865900 R PFAM: ABC transporter; KEGG: bov:BOV_A1029 zinc ABC transporter permease; ABC transporter complement(2865097..2865900) Hyphomicrobium denitrificans ATCC 51888 9388693 YP_003756899.1 CDS Hden_2782 NC_014313.1 2865901 2866788 R KEGG: bmi:BMEA_B1117 zinc import ATP-binding protein ZnuC; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(2865901..2866788) Hyphomicrobium denitrificans ATCC 51888 9388694 YP_003756900.1 CDS Hden_2783 NC_014313.1 2866803 2867294 R KEGG: azc:AZC_4579 Fe2+/Zn2+ uptake regulation protein; Fe2+/Zn2+ uptake regulation protein complement(2866803..2867294) Hyphomicrobium denitrificans ATCC 51888 9388695 YP_003756901.1 CDS Hden_2784 NC_014313.1 2867614 2870952 D KEGG: bra:BRADO0812 hypothetical protein; hypothetical protein 2867614..2870952 Hyphomicrobium denitrificans ATCC 51888 9388696 YP_003756902.1 CDS Hden_2785 NC_014313.1 2870966 2871814 R KEGG: xau:Xaut_4106 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: fumarylacetoacetate hydrolase; ureidoglycolate lyase complement(2870966..2871814) Hyphomicrobium denitrificans ATCC 51888 9388697 YP_003756903.1 CDS Hden_2786 NC_014313.1 2872221 2872385 D hypothetical protein 2872221..2872385 Hyphomicrobium denitrificans ATCC 51888 9388698 YP_003756904.1 CDS Hden_2787 NC_014313.1 2872567 2873457 D KEGG: oca:OCAR_7059 carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; carboxymethylenebutenolidase 2872567..2873457 Hyphomicrobium denitrificans ATCC 51888 9388699 YP_003756905.1 CDS Hden_2788 NC_014313.1 2873503 2873700 D KEGG: azc:AZC_1459 hypothetical protein; hypothetical protein 2873503..2873700 Hyphomicrobium denitrificans ATCC 51888 9388700 YP_003756906.1 CDS Hden_2789 NC_014313.1 2873806 2874159 D PFAM: protein of unknown function DUF583; KEGG: rsk:RSKD131_1297 hypothetical protein; hypothetical protein 2873806..2874159 Hyphomicrobium denitrificans ATCC 51888 9388701 YP_003756907.1 CDS Hden_2790 NC_014313.1 2874192 2875193 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_2818 LysR family transcriptional regulator; LysR family transcriptional regulator complement(2874192..2875193) Hyphomicrobium denitrificans ATCC 51888 9388702 YP_003756908.1 CDS Hden_2791 NC_014313.1 2875268 2876041 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nwi:Nwi_0487 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2875268..2876041 Hyphomicrobium denitrificans ATCC 51888 9388703 YP_003756909.1 CDS Hden_2792 NC_014313.1 2876090 2878939 R KEGG: mpo:Mpop_0777 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: glycine cleavage system P-protein-like; glycine dehydrogenase complement(2876090..2878939) Hyphomicrobium denitrificans ATCC 51888 9388704 YP_003756910.1 CDS Hden_2793 NC_014313.1 2878953 2879315 R KEGG: ara:Arad_2526 glycine cleavage system protein H; TIGRFAM: glycine cleavage system protein H; PFAM: glycine cleavage system protein H; glycine cleavage system protein H complement(2878953..2879315) Hyphomicrobium denitrificans ATCC 51888 9388705 YP_003756911.1 CDS Hden_2794 NC_014313.1 2879351 2880499 R KEGG: azc:AZC_4245 glycine cleavage system T protein; TIGRFAM: glycine cleavage system protein T; PFAM: glycine cleavage T protein (aminomethyl transferase); glycine cleavage T-protein barrel; glycine cleavage system protein T complement(2879351..2880499) Hyphomicrobium denitrificans ATCC 51888 9388706 YP_003756912.1 CDS Hden_2795 NC_014313.1 2880834 2881235 R KEGG: nwi:Nwi_2161 nuclear protein SET; PFAM: nuclear protein SET; SMART: nuclear protein SET; nuclear protein SET complement(2880834..2881235) Hyphomicrobium denitrificans ATCC 51888 9388707 YP_003756913.1 CDS Hden_2796 NC_014313.1 2881537 2882151 D KEGG: atc:AGR_C_4545 heme oxygenase; manually curated; PFAM: Haem oxygenase-like; Heme oxygenase-like protein 2881537..2882151 Hyphomicrobium denitrificans ATCC 51888 9388708 YP_003756914.1 CDS Hden_2797 NC_014313.1 2882342 2884708 R KEGG: rlt:Rleg2_0221 methyl-accepting chemotaxis sensory transducer with cache sensor; PFAM: chemotaxis sensory transducer; Cache domain protein; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer with Cache sensor complement(2882342..2884708) Hyphomicrobium denitrificans ATCC 51888 9388709 YP_003756915.1 CDS Hden_2798 NC_014313.1 2884998 2886347 R KEGG: mno:Mnod_6193 histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(2884998..2886347) Hyphomicrobium denitrificans ATCC 51888 9388710 YP_003756916.1 CDS Hden_2799 NC_014313.1 2886344 2887009 R KEGG: mno:Mnod_6194 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator complement(2886344..2887009) Hyphomicrobium denitrificans ATCC 51888 9388711 YP_003756917.1 CDS Hden_2800 NC_014313.1 2887009 2887335 R KEGG: alv:Alvin_0024 membrane protein-like protein; hypothetical protein complement(2887009..2887335) Hyphomicrobium denitrificans ATCC 51888 9388712 YP_003756918.1 CDS Hden_2801 NC_014313.1 2887471 2887749 D KEGG: mpt:Mpe_A3147 signal peptide protein; signal peptide protein 2887471..2887749 Hyphomicrobium denitrificans ATCC 51888 9388713 YP_003756919.1 CDS Hden_2802 NC_014313.1 2887851 2888507 R KEGG: avn:Avin_11580 acetyltransferase (GNAT) family; hypothetical protein complement(2887851..2888507) Hyphomicrobium denitrificans ATCC 51888 9388714 YP_003756920.1 CDS Hden_2803 NC_014313.1 2888504 2889601 R KEGG: tkm:TK90_2534 hypothetical protein; hypothetical protein complement(2888504..2889601) Hyphomicrobium denitrificans ATCC 51888 9388715 YP_003756921.1 CDS Hden_2804 NC_014313.1 2889836 2890495 R PFAM: isochorismatase hydrolase; KEGG: bac:BamMC406_1819 isochorismatase hydrolase; isochorismatase hydrolase complement(2889836..2890495) Hyphomicrobium denitrificans ATCC 51888 9388716 YP_003756922.1 CDS Hden_2805 NC_014313.1 2890495 2891607 R KEGG: mei:Msip34_0694 phosphate-selective porin O and P; phosphate-selective porin O and P complement(2890495..2891607) Hyphomicrobium denitrificans ATCC 51888 9388717 YP_003756923.1 CDS Hden_2806 NC_014313.1 2891653 2892252 R PFAM: HupE/UreJ protein; KEGG: rlg:Rleg_6126 HupE/UreJ protein; HupE/UreJ protein complement(2891653..2892252) Hyphomicrobium denitrificans ATCC 51888 9388718 YP_003756924.1 CDS Hden_2807 NC_014313.1 2892275 2893150 R PFAM: urease accessory protein UreD; KEGG: mex:Mext_1199 urease accessory protein UreD; urease accessory protein UreD complement(2892275..2893150) Hyphomicrobium denitrificans ATCC 51888 9388719 YP_003756925.1 CDS Hden_2808 NC_014313.1 2893147 2893794 R KEGG: bbt:BBta_4441 urease accessory protein UreG; TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein P47K; urease accessory protein UreG complement(2893147..2893794) Hyphomicrobium denitrificans ATCC 51888 9388720 YP_003756926.1 CDS Hden_2809 NC_014313.1 2893798 2895510 R TIGRFAM: urease subunit alpha; KEGG: mex:Mext_1197 urease subunit alpha; PFAM: amidohydrolase; Urease alpha-subunit domain protein; urease subunit alpha complement(2893798..2895510) Hyphomicrobium denitrificans ATCC 51888 9388721 YP_003756927.1 CDS Hden_2810 NC_014313.1 2895526 2896224 R TIGRFAM: urease subunit gamma; urease, beta subunit; KEGG: bbt:BBta_1961 bifunctional urease subunit gamma/beta; PFAM: Urease subunit gamma region; Urease subunit beta; urease subunit gamma complement(2895526..2896224) Hyphomicrobium denitrificans ATCC 51888 9388722 YP_003756928.1 CDS Hden_2811 NC_014313.1 2896249 2896929 R PFAM: urease accessory protein UreF; KEGG: bbt:BBta_1960 urease accessory protein UreF; urease accessory protein UreF complement(2896249..2896929) Hyphomicrobium denitrificans ATCC 51888 9388723 YP_003756929.1 CDS Hden_2812 NC_014313.1 2896926 2897378 R PFAM: urease accessory protein UreE; KEGG: bbt:BBta_1959 urease accessory protein UreE; urease accessory protein UreE complement(2896926..2897378) Hyphomicrobium denitrificans ATCC 51888 9388724 YP_003756930.1 CDS Hden_2813 NC_014313.1 2897384 2898079 R TIGRFAM: urea ABC transporter ATP-binding protein; PFAM: ABC transporter; KEGG: rle:pRL120441 ABC transporter component; SMART: ATPase AAA; urea ABC transporter ATP-binding protein complement(2897384..2898079) Hyphomicrobium denitrificans ATCC 51888 9388725 YP_003756931.1 CDS Hden_2814 NC_014313.1 2898072 2898869 R TIGRFAM: urea ABC transporter ATP-binding protein; PFAM: ABC transporter; KEGG: atc:AGR_pAT_797 probable ATP-binding component of ABC transporter; SMART: ATPase AAA; urea ABC transporter ATP-binding protein complement(2898072..2898869) Hyphomicrobium denitrificans ATCC 51888 9388726 YP_003756932.1 CDS Hden_2815 NC_014313.1 2898866 2899957 R KEGG: atc:AGR_pAT_795 ABC transporter (permease); TIGRFAM: urea ABC transporter permease; PFAM: inner-membrane translocator; urea ABC transporter permease complement(2898866..2899957) Hyphomicrobium denitrificans ATCC 51888 9388727 YP_003756933.1 CDS Hden_2816 NC_014313.1 2899972 2900862 R PFAM: inner-membrane translocator; KEGG: rle:pRL120444 permease of ABC transporter; inner-membrane translocator complement(2899972..2900862) Hyphomicrobium denitrificans ATCC 51888 9388728 YP_003756934.1 CDS Hden_2817 NC_014313.1 2900914 2902158 R KEGG: atc:AGR_pAT_792 hypothetical protein; hypothetical protein complement(2900914..2902158) Hyphomicrobium denitrificans ATCC 51888 9388729 YP_003756935.1 CDS Hden_2818 NC_014313.1 2902352 2902957 R PFAM: ANTAR domain protein; KEGG: bra:BRADO5875 response regulator; ANTAR domain-containing protein with unknown sensor complement(2902352..2902957) Hyphomicrobium denitrificans ATCC 51888 9388730 YP_003756936.1 CDS Hden_2819 NC_014313.1 2902961 2904115 R PFAM: extracellular ligand-binding receptor; KEGG: bra:BRADO5876 aliphatic amidase expression-regulating protein (AmiC); extracellular ligand-binding receptor complement(2902961..2904115) Hyphomicrobium denitrificans ATCC 51888 9388731 YP_003756937.1 CDS Hden_2820 NC_014313.1 2904248 2905615 R KEGG: azl:AZL_a02790 two-component sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(2904248..2905615) Hyphomicrobium denitrificans ATCC 51888 9388732 YP_003756938.1 CDS Hden_2821 NC_014313.1 2905624 2906313 R KEGG: sal:Sala_0801 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator complement(2905624..2906313) Hyphomicrobium denitrificans ATCC 51888 9388733 YP_003756939.1 CDS Hden_2822 NC_014313.1 2906432 2907487 D TIGRFAM: efflux transporter RND family, MFP subunit; KEGG: swi:Swit_3713 RND family efflux transporter MFP subunit; RND family efflux transporter MFP subunit 2906432..2907487 Hyphomicrobium denitrificans ATCC 51888 9388734 YP_003756940.1 CDS Hden_2823 NC_014313.1 2907491 2910655 D KEGG: swi:Swit_3712 CzcA family heavy metal efflux protein; TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; CzcA family heavy metal efflux pump 2907491..2910655 Hyphomicrobium denitrificans ATCC 51888 9388735 YP_003756941.1 CDS Hden_2824 NC_014313.1 2910655 2910945 D KEGG: dac:Daci_2708 hypothetical protein; hypothetical protein 2910655..2910945 Hyphomicrobium denitrificans ATCC 51888 9388736 YP_003756942.1 CDS Hden_2825 NC_014313.1 2910942 2911154 D hypothetical protein 2910942..2911154 Hyphomicrobium denitrificans ATCC 51888 9388737 YP_003756943.1 CDS Hden_2826 NC_014313.1 2911171 2911482 D KEGG: tgo:TGME49_004510 hypothetical protein; hypothetical protein 2911171..2911482 Hyphomicrobium denitrificans ATCC 51888 9388738 YP_003756944.1 CDS Hden_2827 NC_014313.1 2911764 2913116 D PFAM: ferric reductase domain protein transmembrane component domain; oxidoreductase FAD-binding domain protein; KEGG: dia:Dtpsy_0748 ferric reductase domain protein transmembrane component; ferric reductase transmembrane domain-containing protein 2911764..2913116 Hyphomicrobium denitrificans ATCC 51888 9388739 YP_003756945.1 CDS Hden_2828 NC_014313.1 2913284 2914030 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mag:amb0880 dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2913284..2914030) Hyphomicrobium denitrificans ATCC 51888 9388740 YP_003756946.1 CDS Hden_2829 NC_014313.1 2914383 2914937 D KEGG: mpt:Mpe_A2975 BadM/Rrf2 family transcriptional regulator; TIGRFAM: Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 2914383..2914937 Hyphomicrobium denitrificans ATCC 51888 9388741 YP_003756947.1 CDS Hden_2830 NC_014313.1 2915054 2915584 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: rlt:Rleg2_0711 bifunctional deaminase-reductase domain protein; bifunctional deaminase-reductase domain-containing protein complement(2915054..2915584) Hyphomicrobium denitrificans ATCC 51888 9388742 YP_003756948.1 CDS Hden_2831 NC_014313.1 2915820 2916119 D KEGG: mtp:Mthe_0454 diaminopimelate epimerase; hypothetical protein 2915820..2916119 Hyphomicrobium denitrificans ATCC 51888 9388743 YP_003756949.1 CDS Hden_2832 NC_014313.1 2916308 2917096 D KEGG: vap:Vapar_3221 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; LuxR family transcriptional regulator 2916308..2917096 Hyphomicrobium denitrificans ATCC 51888 9388744 YP_003756950.1 CDS Hden_2833 NC_014313.1 2917207 2920914 D TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; KEGG: bcj:BCAM2169 outer membrane autotransporter; SMART: Autotransporter beta- domain protein; outer membrane autotransporter barrel domain-containing protein 2917207..2920914 Hyphomicrobium denitrificans ATCC 51888 9388745 YP_003756951.1 CDS Hden_2834 NC_014313.1 2921055 2923442 R KEGG: nha:Nham_3292 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; TonB-dependent siderophore receptor complement(2921055..2923442) Hyphomicrobium denitrificans ATCC 51888 9388746 YP_003756952.1 CDS Hden_2835 NC_014313.1 2924117 2924638 R hypothetical protein complement(2924117..2924638) Hyphomicrobium denitrificans ATCC 51888 9388748 YP_003756953.1 CDS Hden_2836 NC_014313.1 2924743 2925687 R TIGRFAM: 2-dehydropantoate 2-reductase; KEGG: rpf:Rpic12D_0067 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase complement(2924743..2925687) Hyphomicrobium denitrificans ATCC 51888 9388749 YP_003756954.1 CDS Hden_2837 NC_014313.1 2925779 2926363 R KEGG: cqu:CpipJ_CPIJ005630 hypothetical protein; hypothetical protein complement(2925779..2926363) Hyphomicrobium denitrificans ATCC 51888 9388750 YP_003756955.1 CDS Hden_2838 NC_014313.1 2926444 2928255 R KEGG: sme:SMc01756 aspartyl-tRNA synthetase; TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; aspartyl-tRNA synthetase complement(2926444..2928255) Hyphomicrobium denitrificans ATCC 51888 9388751 YP_003756956.1 CDS Hden_2839 NC_014313.1 2928501 2929655 D SMART: 3'-5' exonuclease; TIGRFAM: ribonuclease D; KEGG: xau:Xaut_3138 ribonuclease D; PFAM: 3'-5' exonuclease; HRDC domain protein; ribonuclease D 2928501..2929655 Hyphomicrobium denitrificans ATCC 51888 9388752 YP_003756957.1 CDS Hden_2840 NC_014313.1 2929932 2930897 R KEGG: pzu:PHZ_p0115 heat shock protein DnaJ, N-terminal; PFAM: chaperone DnaJ domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone DnaJ domain-containing protein complement(2929932..2930897) Hyphomicrobium denitrificans ATCC 51888 9388753 YP_003756958.1 CDS Hden_2841 NC_014313.1 2930961 2932496 R PFAM: Ppx/GppA phosphatase; KEGG: azc:AZC_3665 Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(2930961..2932496) Hyphomicrobium denitrificans ATCC 51888 9388754 YP_003756959.1 CDS Hden_2842 NC_014313.1 2932512 2934683 R KEGG: bid:Bind_1568 polyphosphate kinase; PFAM: polyphosphate kinase; polyphosphate kinase complement(2932512..2934683) Hyphomicrobium denitrificans ATCC 51888 9388755 YP_003756960.1 CDS Hden_2843 NC_014313.1 2934774 2935448 R KEGG: rsq:Rsph17025_0399 chromosomal replication initiator, DnaA; chromosomal replication initiator, DnaA complement(2934774..2935448) Hyphomicrobium denitrificans ATCC 51888 9388756 YP_003756961.1 CDS Hden_2844 NC_014313.1 2935464 2936537 R PFAM: protein of unknown function UPF0118; KEGG: rec:RHECIAT_CH0001557 permease; hypothetical protein complement(2935464..2936537) Hyphomicrobium denitrificans ATCC 51888 9388757 YP_003756962.1 CDS Hden_2845 NC_014313.1 2936591 2937145 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: bra:BRADO3343 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (phosphatidylglycerophosphate synthase) (PGP synthase); CDP-alcohol phosphatidyltransferase complement(2936591..2937145) Hyphomicrobium denitrificans ATCC 51888 9388758 YP_003756963.1 CDS Hden_2846 NC_014313.1 2937319 2938455 R KEGG: pla:Plav_3330 hypothetical protein; hypothetical protein complement(2937319..2938455) Hyphomicrobium denitrificans ATCC 51888 9388759 YP_003756964.1 CDS Hden_2847 NC_014313.1 2938654 2939784 D TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; KEGG: mno:Mnod_5547 phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 2938654..2939784 Hyphomicrobium denitrificans ATCC 51888 9388760 YP_003756965.1 CDS Hden_2848 NC_014313.1 2939822 2941639 R TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family; PFAM: PQQ-dependent enzyme-like; pyrrolo-quinoline quinone; KEGG: rpe:RPE_0851 pyrrolo-quinoline quinone; SMART: pyrrolo-quinoline quinone beta-propeller repeat; methanol/ethanol family PQQ-dependent dehydrogenase complement(2939822..2941639) Hyphomicrobium denitrificans ATCC 51888 9388761 YP_003756966.1 CDS Hden_2849 NC_014313.1 2941867 2942127 D KEGG: pcb:PC000826.00.0 hypothetical protein; hypothetical protein 2941867..2942127 Hyphomicrobium denitrificans ATCC 51888 9388762 YP_003756967.1 CDS Hden_2850 NC_014313.1 2942354 2943433 D PFAM: glycosyl transferase group 1; KEGG: bid:Bind_0114 glycosyl transferase group 1; group 1 glycosyl transferase 2942354..2943433 Hyphomicrobium denitrificans ATCC 51888 9388763 YP_003756968.1 CDS Hden_2851 NC_014313.1 2943488 2944144 D KEGG: mpo:Mpop_2023 phosphoribosylglycinamide formyltransferase; TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase; phosphoribosylglycinamide formyltransferase 2943488..2944144 Hyphomicrobium denitrificans ATCC 51888 9388764 YP_003756969.1 CDS Hden_2852 NC_014313.1 2944343 2945704 D PFAM: cytochrome P450; KEGG: chl:Chy400_1647 cytochrome P450; cytochrome P450 2944343..2945704 Hyphomicrobium denitrificans ATCC 51888 9388765 YP_003756970.1 CDS Hden_2853 NC_014313.1 2946044 2946244 D hypothetical protein 2946044..2946244 Hyphomicrobium denitrificans ATCC 51888 9388766 YP_003756971.1 CDS Hden_2854 NC_014313.1 2946420 2946935 R PFAM: DinB family protein; KEGG: acr:Acry_1562 DinB family protein; DinB family protein complement(2946420..2946935) Hyphomicrobium denitrificans ATCC 51888 9388767 YP_003756972.1 CDS Hden_2855 NC_014313.1 2947005 2947427 R PFAM: nucleoside diphosphate kinase; KEGG: pzu:PHZ_c1820 nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(2947005..2947427) Hyphomicrobium denitrificans ATCC 51888 9388768 YP_003756973.1 CDS Hden_2856 NC_014313.1 2947668 2949098 D KEGG: bcm:Bcenmc03_3418 hypothetical protein; hypothetical protein 2947668..2949098 Hyphomicrobium denitrificans ATCC 51888 9388769 YP_003756974.1 CDS Hden_2857 NC_014313.1 2949105 2949455 D KEGG: tbd:Tbd_0892 hypothetical protein; hypothetical protein 2949105..2949455 Hyphomicrobium denitrificans ATCC 51888 9388770 YP_003756975.1 CDS Hden_2858 NC_014313.1 2949496 2951400 D KEGG: pla:Plav_3334 ABC transporter; PFAM: ABC transporter related; SMART: ATPase AAA; ABC transporter 2949496..2951400 Hyphomicrobium denitrificans ATCC 51888 9388771 YP_003756976.1 CDS Hden_2859 NC_014313.1 2951575 2951874 D KEGG: dwi:Dwil_GK12723 GK12723 gene product from transcript GK12723-RA; hypothetical protein 2951575..2951874 Hyphomicrobium denitrificans ATCC 51888 9388772 YP_003756977.1 CDS Hden_2860 NC_014313.1 2951975 2953177 D KEGG: nha:Nham_1796 chromate transporter; TIGRFAM: chromate transporter chromate ion transporter (CHR) family; PFAM: Chromate transporter; chromate transporter 2951975..2953177 Hyphomicrobium denitrificans ATCC 51888 9388773 YP_003756978.1 CDS Hden_2861 NC_014313.1 2953188 2955269 R TIGRFAM: glycyl-tRNA synthetase subunit beta; KEGG: mch:Mchl_3416 glycyl-tRNA synthetase subunit beta; glycyl-tRNA synthetase subunit beta complement(2953188..2955269) Hyphomicrobium denitrificans ATCC 51888 9388774 YP_003756979.1 CDS Hden_2862 NC_014313.1 2955345 2955833 R KEGG: mmu:100039562 predicted gene 2312; hypothetical protein complement(2955345..2955833) Hyphomicrobium denitrificans ATCC 51888 9388775 YP_003756980.1 CDS Hden_2863 NC_014313.1 2955830 2956774 R TIGRFAM: glycyl-tRNA synthetase subunit alpha; KEGG: bra:BRADO2029 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase subunit alpha; glycyl-tRNA synthetase subunit alpha complement(2955830..2956774) Hyphomicrobium denitrificans ATCC 51888 9388776 YP_003756981.1 CDS Hden_2864 NC_014313.1 2956925 2957134 R KEGG: sbi:SORBI_07g003550 hypothetical protein; hypothetical protein complement(2956925..2957134) Hyphomicrobium denitrificans ATCC 51888 9388777 YP_003756982.1 CDS Hden_2865 NC_014313.1 2957155 2957988 R PFAM: peptidase S49; KEGG: bbt:BBta_2353 serine protease SohB; peptidase S49 complement(2957155..2957988) Hyphomicrobium denitrificans ATCC 51888 9388778 YP_003756983.1 CDS Hden_2866 NC_014313.1 2958069 2958869 R PFAM: methyltransferase small; KEGG: mch:Mchl_3425 methyltransferase small; methyltransferase small complement(2958069..2958869) Hyphomicrobium denitrificans ATCC 51888 9388779 YP_003756984.1 CDS Hden_2867 NC_014313.1 2958856 2959089 R PFAM: protein of unknown function DUF2007; KEGG: rhi:NGR_c04590 hypothetical protein; hypothetical protein complement(2958856..2959089) Hyphomicrobium denitrificans ATCC 51888 9388780 YP_003756985.1 CDS Hden_2868 NC_014313.1 2959178 2960206 D PFAM: polyprenyl synthetase; KEGG: bid:Bind_0855 polyprenyl synthetase; polyprenyl synthetase 2959178..2960206 Hyphomicrobium denitrificans ATCC 51888 9388781 YP_003756986.1 CDS Hden_2869 NC_014313.1 2960222 2961088 R TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: rpe:RPE_4419 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2C-methyl-D-erythritol kinase complement(2960222..2961088) Hyphomicrobium denitrificans ATCC 51888 9388782 YP_003756987.1 CDS Hden_2870 NC_014313.1 2961172 2962989 R KEGG: nwi:Nwi_2594 hypothetical protein; PFAM: hypothetical protein; SMART: Tetratricopeptide repeat; hypothetical protein complement(2961172..2962989) Hyphomicrobium denitrificans ATCC 51888 9388783 YP_003756988.1 CDS Hden_2871 NC_014313.1 2963198 2964886 R KEGG: pla:Plav_0719 electron-transferring-flavoprotein dehydrogenase; PFAM: electron transfer flavoprotein-ubiquinone oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; electron-transferring-flavoprotein dehydrogenase complement(2963198..2964886) Hyphomicrobium denitrificans ATCC 51888 9388784 YP_003756989.1 CDS Hden_2872 NC_014313.1 2965049 2965876 D KEGG: azl:AZL_e02140 DNA polymerase bacteriophage-type; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: uracil-DNA glycosylase superfamily; phage SPO1 DNA polymerase-like protein 2965049..2965876 Hyphomicrobium denitrificans ATCC 51888 9388785 YP_003756990.1 CDS Hden_2873 NC_014313.1 2966075 2966599 D KEGG: dvm:DvMF_1576 transcriptional regulator, AraC family; PFAM: transcription activator effector binding; SMART: transcription activator effector binding; transcription activator effector binding protein 2966075..2966599 Hyphomicrobium denitrificans ATCC 51888 9388786 YP_003756991.1 CDS Hden_2874 NC_014313.1 2966689 2967231 D TIGRFAM: molybdenum cofactor biosynthesis protein B; molybdenum cofactor synthesis protein; PFAM: molybdopterin binding domain; KEGG: mno:Mnod_6073 molybdenum cofactor biosynthesis protein B; SMART: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B 2966689..2967231 Hyphomicrobium denitrificans ATCC 51888 9388787 YP_003756992.1 CDS Hden_2875 NC_014313.1 2967228 2967932 R PFAM: glycosyl transferase family 2; KEGG: pla:Plav_0708 glycosyl transferase; family 2 glycosyl transferase complement(2967228..2967932) Hyphomicrobium denitrificans ATCC 51888 9388788 YP_003756993.1 CDS Hden_2876 NC_014313.1 2968076 2969191 D KEGG: bmt:BSUIS_A0415 radical SAM domain-containing protein; PFAM: radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM protein 2968076..2969191 Hyphomicrobium denitrificans ATCC 51888 9388789 YP_003756994.1 CDS Hden_2877 NC_014313.1 2969222 2969917 D KEGG: swi:Swit_4574 ribonuclease H; PFAM: ribonuclease HII/HIII; ribonuclease H 2969222..2969917 Hyphomicrobium denitrificans ATCC 51888 9388790 YP_003756995.1 CDS Hden_2878 NC_014313.1 2970037 2971164 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pzu:PHZ_c0577 modification methylase; DNA methylase N-4/N-6 domain-containing protein 2970037..2971164 Hyphomicrobium denitrificans ATCC 51888 9388791 YP_003756996.1 CDS Hden_2879 NC_014313.1 2971171 2972283 R TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; helix-hairpin-helix motif; KEGG: rce:RC1_0510 A/G-specific adenine glycosylase; SMART: HhH-GPD family protein; DNA-binding protein; iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(2971171..2972283) Hyphomicrobium denitrificans ATCC 51888 9388792 YP_003756997.1 CDS Hden_2880 NC_014313.1 2972382 2972933 D PFAM: protein of unknown function DUF721; KEGG: bbt:BBta_2320 hypothetical protein; hypothetical protein 2972382..2972933 Hyphomicrobium denitrificans ATCC 51888 9388793 YP_003756998.1 CDS Hden_2881 NC_014313.1 2973063 2973764 D PFAM: DSBA oxidoreductase; KEGG: msl:Msil_1603 DsbA oxidoreductase; DSBA oxidoreductase 2973063..2973764 Hyphomicrobium denitrificans ATCC 51888 9388794 YP_003756999.1 CDS Hden_2882 NC_014313.1 2973780 2974574 D KEGG: rhi:NGR_c05580 disulfide bond formation protein D; disulfide bond formation protein D 2973780..2974574 Hyphomicrobium denitrificans ATCC 51888 9388795 YP_003757000.1 CDS Hden_2883 NC_014313.1 2974635 2978096 D KEGG: bmr:BMI_I499 chromosome segregation protein SMC; TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; chromosome segregation protein SMC 2974635..2978096 Hyphomicrobium denitrificans ATCC 51888 9388796 YP_003757001.1 CDS Hden_2884 NC_014313.1 2978177 2978422 D KEGG: rhi:NGR_c03620 hypothetical protein; hypothetical protein 2978177..2978422 Hyphomicrobium denitrificans ATCC 51888 9388797 YP_003757002.1 CDS Hden_2885 NC_014313.1 2978663 2979064 D KEGG: mlo:mlr7410 FoF1 ATP synthase, subunit I; FoF1 ATP synthase subunit I 2978663..2979064 Hyphomicrobium denitrificans ATCC 51888 9388798 YP_003757003.1 CDS Hden_2886 NC_014313.1 2979083 2979841 D KEGG: apb:SAR116_1101 H+-transporting two-sector ATPase, subunit alpha; TIGRFAM: ATP synthase F0 subunit alpha; PFAM: H+transporting two-sector ATPase subunit alpha; ATP synthase F0 subunit alpha 2979083..2979841 Hyphomicrobium denitrificans ATCC 51888 9388799 YP_003757004.1 CDS Hden_2887 NC_014313.1 2979906 2980130 D KEGG: pub:SAR11_0117 F0F1 ATP synthase subunit C; TIGRFAM: ATP synthase F0 C subunit; PFAM: H+transporting two-sector ATPase C subunit; ATP synthase F0 C subunit 2979906..2980130 Hyphomicrobium denitrificans ATCC 51888 9388800 YP_003757005.1 CDS Hden_2888 NC_014313.1 2980166 2980729 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: azc:AZC_4262 ATP synthase subunit B precursor; H+transporting two-sector ATPase B/B' subunit 2980166..2980729 Hyphomicrobium denitrificans ATCC 51888 9388801 YP_003757006.1 CDS Hden_2889 NC_014313.1 2980739 2981230 D PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: bov:BOV_0397 F0F1 ATP synthase subunit B; H+transporting two-sector ATPase B/B' subunit 2980739..2981230 Hyphomicrobium denitrificans ATCC 51888 9388802 YP_003757007.1 CDS Hden_2890 NC_014313.1 2981320 2982021 R KEGG: avi:Avi_1078 hypothetical protein; hypothetical protein complement(2981320..2982021) Hyphomicrobium denitrificans ATCC 51888 9388803 YP_003757008.1 CDS Hden_2891 NC_014313.1 2982172 2983149 D TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; KEGG: oca:OCAR_7331 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 2982172..2983149 Hyphomicrobium denitrificans ATCC 51888 9388804 YP_003757009.1 CDS Hden_2892 NC_014313.1 2983176 2984147 D TIGRFAM: homoserine kinase; KEGG: rce:RC1_3648 homoserine kinase; PFAM: aminoglycoside phosphotransferase; homoserine kinase 2983176..2984147 Hyphomicrobium denitrificans ATCC 51888 9388805 YP_003757010.1 CDS Hden_2893 NC_014313.1 2984144 2984623 D KEGG: smd:Smed_0529 ribonuclease H; PFAM: ribonuclease H; ribonuclease H 2984144..2984623 Hyphomicrobium denitrificans ATCC 51888 9388806 YP_003757011.1 CDS Hden_2894 NC_014313.1 2984620 2985114 R PFAM: redoxin; KEGG: mno:Mnod_6935 redoxin domain protein; redoxin complement(2984620..2985114) Hyphomicrobium denitrificans ATCC 51888 9388807 YP_003757012.1 CDS Hden_2895 NC_014313.1 2985165 2986001 R KEGG: mno:Mnod_6934 hypothetical protein; hypothetical protein complement(2985165..2986001) Hyphomicrobium denitrificans ATCC 51888 9388808 YP_003757013.1 CDS Hden_2896 NC_014313.1 2986164 2986781 D PFAM: protein of unknown function DUF179; KEGG: oca:OCAR_7326 hypothetical protein; hypothetical protein 2986164..2986781 Hyphomicrobium denitrificans ATCC 51888 9388809 YP_003757014.1 CDS Hden_2897 NC_014313.1 2986818 2990540 R TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; Diverse 7TM receptor extracellular region 2; Diverse 7TM receptor transmembrane region; GGDEF domain containing protein; PAS fold-3 domain protein; KEGG: msl:Msil_1254 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s) complement(2986818..2990540) Hyphomicrobium denitrificans ATCC 51888 9388810 YP_003757015.1 CDS Hden_2898 NC_014313.1 2990540 2991151 R KEGG: azc:AZC_2241 ribosomal-protein-alanine N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine N-acetyltransferase complement(2990540..2991151) Hyphomicrobium denitrificans ATCC 51888 9388811 YP_003757016.1 CDS Hden_2899 NC_014313.1 2991159 2992460 R KEGG: azc:AZC_2240 mitochondrial processing peptidase-like protein; PFAM: peptidase M16 domain protein; processing peptidase complement(2991159..2992460) Hyphomicrobium denitrificans ATCC 51888 9388812 YP_003757017.1 CDS Hden_2900 NC_014313.1 2992457 2993857 R TIGRFAM: threonine synthase; KEGG: xau:Xaut_3524 threonine synthase; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; threonine synthase complement(2992457..2993857) Hyphomicrobium denitrificans ATCC 51888 9388813 YP_003757018.1 CDS Hden_2901 NC_014313.1 2993961 2994746 R PFAM: Surfeit locus 1 family protein; KEGG: met:M446_2342 surfeit locus 1 family protein; Surfeit locus 1 family protein complement(2993961..2994746) Hyphomicrobium denitrificans ATCC 51888 9388814 YP_003757019.1 CDS Hden_2902 NC_014313.1 2994749 2995132 R PFAM: protein of unknown function DUF983; KEGG: bra:BRADO6700 hypothetical protein; hypothetical protein complement(2994749..2995132) Hyphomicrobium denitrificans ATCC 51888 9388815 YP_003757020.1 CDS Hden_2903 NC_014313.1 2995281 2996216 R PFAM: cytochrome C oxidase subunit III; KEGG: pla:Plav_0673 cytochrome C oxidase subunit III; cytochrome C oxidase subunit III complement(2995281..2996216) Hyphomicrobium denitrificans ATCC 51888 9388816 YP_003757021.1 CDS Hden_2904 NC_014313.1 2996352 2996966 R PFAM: cytochrome C oxidase assembly protein CtaG/Cox11; KEGG: oan:Oant_0585 cytochrome C oxidase assembly protein; cytochrome C oxidase assembly protein CtaG/Cox11 complement(2996352..2996966) Hyphomicrobium denitrificans ATCC 51888 9388817 YP_003757022.1 CDS Hden_2905 NC_014313.1 2996966 2997127 R KEGG: bid:Bind_0727 protein CoxF; protein CoxF complement(2996966..2997127) Hyphomicrobium denitrificans ATCC 51888 9388818 YP_003757023.1 CDS Hden_2906 NC_014313.1 2997139 2998062 R KEGG: pla:Plav_0671 protoheme IX farnesyltransferase; TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase complement(2997139..2998062) Hyphomicrobium denitrificans ATCC 51888 9388819 YP_003757024.1 CDS Hden_2907 NC_014313.1 2998163 2999788 R KEGG: azc:AZC_2959 cytochrome C oxidase subunit I; TIGRFAM: cytochrome C oxidase subunit I; PFAM: cytochrome C oxidase subunit I; cytochrome C oxidase subunit I complement(2998163..2999788) Hyphomicrobium denitrificans ATCC 51888 9388820 YP_003757025.1 CDS Hden_2908 NC_014313.1 2999882 3000859 R KEGG: rpd:RPD_0814 cytochrome-c oxidase; TIGRFAM: cytochrome C oxidase subunit II; PFAM: cytochrome C oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; cytochrome C oxidase subunit II complement(2999882..3000859) Hyphomicrobium denitrificans ATCC 51888 9388821 YP_003757026.1 CDS Hden_2909 NC_014313.1 3001245 3001856 D PFAM: invasion associated locus B family protein; KEGG: xau:Xaut_4649 invasion associated locus B family protein; invasion associated locus B family protein 3001245..3001856 Hyphomicrobium denitrificans ATCC 51888 9388822 YP_003757027.1 CDS Hden_2910 NC_014313.1 3001927 3002355 R KEGG: ppg:PputGB1_2895 catalase domain-containing protein; hypothetical protein complement(3001927..3002355) Hyphomicrobium denitrificans ATCC 51888 9388823 YP_003757028.1 CDS Hden_2911 NC_014313.1 3002702 3003613 D KEGG: nha:Nham_2600 hypothetical protein; hypothetical protein 3002702..3003613 Hyphomicrobium denitrificans ATCC 51888 9388824 YP_003757029.1 CDS Hden_2912 NC_014313.1 3003640 3003945 D KEGG: oaa:100075777 similar to WW domain-containing adapter protein with coiled-coil; hypothetical protein 3003640..3003945 Hyphomicrobium denitrificans ATCC 51888 9388825 YP_003757030.1 CDS Hden_2913 NC_014313.1 3004365 3005006 D PFAM: regulatory protein TetR; KEGG: met:M446_0429 TetR family transcriptional regulator; TetR family transcriptional regulator 3004365..3005006 Hyphomicrobium denitrificans ATCC 51888 9388826 YP_003757031.1 CDS Hden_2914 NC_014313.1 3005003 3006217 D KEGG: met:M446_0428 RND family efflux transporter MFP subunit; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3005003..3006217 Hyphomicrobium denitrificans ATCC 51888 9388827 YP_003757032.1 CDS Hden_2915 NC_014313.1 3006217 3009351 D PFAM: acriflavin resistance protein; KEGG: met:M446_0427 acriflavin resistance protein; acriflavin resistance protein 3006217..3009351 Hyphomicrobium denitrificans ATCC 51888 9388828 YP_003757033.1 CDS Hden_2916 NC_014313.1 3009444 3010583 D PFAM: protein of unknown function DUF533; KEGG: msl:Msil_0620 protein of unknown function DUF533; hypothetical protein 3009444..3010583 Hyphomicrobium denitrificans ATCC 51888 9388829 YP_003757034.1 CDS Hden_2917 NC_014313.1 3010685 3011791 R PFAM: secretion protein HlyD; KEGG: bbt:BBta_7064 hypothetical protein; secretion protein HlyD complement(3010685..3011791) Hyphomicrobium denitrificans ATCC 51888 9388830 YP_003757035.1 CDS Hden_2918 NC_014313.1 3011784 3012536 R KEGG: bbt:BBta_7063 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(3011784..3012536) Hyphomicrobium denitrificans ATCC 51888 9388831 YP_003757036.1 CDS Hden_2919 NC_014313.1 3012533 3013663 R PFAM: protein of unknown function DUF214; KEGG: bbt:BBta_7062 ABC transporter permease; hypothetical protein complement(3012533..3013663) Hyphomicrobium denitrificans ATCC 51888 9388832 YP_003757037.1 CDS Hden_2920 NC_014313.1 3013924 3014589 D PFAM: protein of unknown function DUF2147; KEGG: xau:Xaut_1034 hypothetical protein; hypothetical protein 3013924..3014589 Hyphomicrobium denitrificans ATCC 51888 9388833 YP_003757038.1 CDS Hden_2921 NC_014313.1 3014558 3015445 R manually curated; KEGG: azc:AZC_1648 esterase; esterase complement(3014558..3015445) Hyphomicrobium denitrificans ATCC 51888 9388834 YP_003757039.1 CDS Hden_2922 NC_014313.1 3016005 3017813 D KEGG: mvn:Mevan_1402 methyl-accepting chemotaxis sensory transducer; hypothetical protein 3016005..3017813 Hyphomicrobium denitrificans ATCC 51888 9388835 YP_003757040.1 CDS Hden_2923 NC_014313.1 3017946 3018161 D KEGG: mes:Meso_3941 hypothetical protein; hypothetical protein 3017946..3018161 Hyphomicrobium denitrificans ATCC 51888 9388836 YP_003757041.1 CDS Hden_2924 NC_014313.1 3018275 3018508 D KEGG: rer:RER_07200 hypothetical protein; hypothetical protein 3018275..3018508 Hyphomicrobium denitrificans ATCC 51888 9388837 YP_003757042.1 CDS Hden_2925 NC_014313.1 3018479 3020380 R KEGG: sal:Sala_0171 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: chorismate binding-like; aminotransferase class IV; para-aminobenzoate synthase subunit I complement(3018479..3020380) Hyphomicrobium denitrificans ATCC 51888 9388838 YP_003757043.1 CDS Hden_2926 NC_014313.1 3020631 3021854 D PFAM: monooxygenase FAD-binding; KEGG: nwi:Nwi_2327 hypothetical protein; FAD-binding monooxygenase protein 3020631..3021854 Hyphomicrobium denitrificans ATCC 51888 9388839 YP_003757044.1 CDS Hden_2927 NC_014313.1 3022109 3023158 D TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: gox:GOX0315 sensory transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; signal transduction histidine kinase 3022109..3023158 Hyphomicrobium denitrificans ATCC 51888 9388840 YP_003757045.1 CDS Hden_2928 NC_014313.1 3023227 3024171 R PFAM: Mg2 transporter protein CorA family protein; KEGG: mlo:mlr9579 magnesium and cobalt transporter; Mg2 transporter protein CorA family protein complement(3023227..3024171) Hyphomicrobium denitrificans ATCC 51888 9388841 YP_003757046.1 CDS Hden_2930 NC_014313.1 3024517 3024648 R hypothetical protein complement(3024517..3024648) Hyphomicrobium denitrificans ATCC 51888 9388843 YP_003757047.1 CDS Hden_2931 NC_014313.1 3024741 3026450 D TIGRFAM: potassium-transporting ATPase subunit alpha; KEGG: smd:Smed_5358 potassium-transporting ATPase A; PFAM: K transporting ATPase subunit alpha; potassium-transporting ATPase subunit alpha 3024741..3026450 Hyphomicrobium denitrificans ATCC 51888 9388844 YP_003757048.1 CDS Hden_2932 NC_014313.1 3026460 3028511 D KEGG: sme:SMa2331 potassium-transporting ATPase B; TIGRFAM: K+-transporting ATPase subunit beta; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; haloacid dehalogenase; K+-transporting ATPase subunit beta 3026460..3028511 Hyphomicrobium denitrificans ATCC 51888 9388845 YP_003757049.1 CDS Hden_2933 NC_014313.1 3028539 3029117 D TIGRFAM: potassium ABC transporter ATPase; KEGG: oca:OCAR_4177 K+-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium ABC transporter ATPase 3028539..3029117 Hyphomicrobium denitrificans ATCC 51888 9388846 YP_003757050.1 CDS Hden_2934 NC_014313.1 3029121 3031841 D KEGG: sme:SMa2327 sensor protein; PFAM: osmosensitive K channel His kinase sensor; ATP-binding region ATPase domain protein; UspA domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; osmosensitive K channel signal transduction histidine kinase 3029121..3031841 Hyphomicrobium denitrificans ATCC 51888 9388847 YP_003757051.1 CDS Hden_2935 NC_014313.1 3031838 3032530 D KEGG: smd:Smed_5362 two component transcriptional regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; winged helix family two component transcriptional regulator 3031838..3032530 Hyphomicrobium denitrificans ATCC 51888 9388848 YP_003757052.1 CDS Hden_2936 NC_014313.1 3032566 3034041 D KEGG: oan:Oant_4139 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; GntR family transcriptional regulator 3032566..3034041 Hyphomicrobium denitrificans ATCC 51888 9388849 YP_003757053.1 CDS Hden_2937 NC_014313.1 3034189 3034902 D KEGG: rpa:RPA1393 hypothetical protein; hypothetical protein 3034189..3034902 Hyphomicrobium denitrificans ATCC 51888 9388850 YP_003757054.1 CDS Hden_2938 NC_014313.1 3035622 3036623 D PFAM: protein of unknown function DUF323; KEGG: mno:Mnod_8069 protein of unknown function DUF323; hypothetical protein 3035622..3036623 Hyphomicrobium denitrificans ATCC 51888 9388851 YP_003757055.1 CDS Hden_2939 NC_014313.1 3036642 3037721 D KEGG: gme:Gmet_1199 hypothetical protein; hypothetical protein 3036642..3037721 Hyphomicrobium denitrificans ATCC 51888 9388852 YP_003757056.1 CDS Hden_2940 NC_014313.1 3037814 3039616 D PFAM: sulfatase; KEGG: fjo:Fjoh_1142 sulfatase; sulfatase 3037814..3039616 Hyphomicrobium denitrificans ATCC 51888 9388853 YP_003757057.1 CDS Hden_2941 NC_014313.1 3039638 3040651 D KEGG: app:CAP2UW1_0198 nonspecific acid phosphatase precursor; nonspecific acid phosphatase 3039638..3040651 Hyphomicrobium denitrificans ATCC 51888 9388854 YP_003757058.1 CDS Hden_2942 NC_014313.1 3040648 3042090 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: nha:Nham_2980 hypothetical protein; hypothetical protein 3040648..3042090 Hyphomicrobium denitrificans ATCC 51888 9388855 YP_003757059.1 CDS Hden_2943 NC_014313.1 3042115 3043224 D PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: rme:Rmet_5225 hypothetical protein; hypothetical protein 3042115..3043224 Hyphomicrobium denitrificans ATCC 51888 9388856 YP_003757060.1 CDS Hden_2944 NC_014313.1 3043254 3043490 D KEGG: xau:Xaut_3415 hypothetical protein; hypothetical protein 3043254..3043490 Hyphomicrobium denitrificans ATCC 51888 9388857 YP_003757061.1 CDS Hden_2945 NC_014313.1 3043487 3044428 D PFAM: secretion protein HlyD; KEGG: nha:Nham_2977 secretion protein HlyD; secretion protein HlyD 3043487..3044428 Hyphomicrobium denitrificans ATCC 51888 9388858 YP_003757062.1 CDS Hden_2946 NC_014313.1 3044619 3045551 D KEGG: mea:Mex_2p1237 hypothetical protein; hypothetical protein 3044619..3045551 Hyphomicrobium denitrificans ATCC 51888 9388859 YP_003757063.1 CDS Hden_2947 NC_014313.1 3045708 3046319 D KEGG: mlo:mlr2855 two-component response regulator; PFAM: ANTAR domain protein; response regulator receiver; SMART: response regulator receiver; response regulator receiver and ANTAR domain-containing protein 3045708..3046319 Hyphomicrobium denitrificans ATCC 51888 9388860 YP_003757064.1 CDS Hden_2948 NC_014313.1 3046322 3047548 D KEGG: mlo:mlr2856 nitrate transporter component, NrtA; nitrate transporter component, NrtA 3046322..3047548 Hyphomicrobium denitrificans ATCC 51888 9388861 YP_003757065.1 CDS Hden_2949 NC_014313.1 3047828 3049153 D PFAM: major facilitator superfamily MFS_1; KEGG: mes:Meso_1450 major facilitator transporter; major facilitator superfamily protein 3047828..3049153 Hyphomicrobium denitrificans ATCC 51888 9388862 YP_003757066.1 CDS Hden_2950 NC_014313.1 3049150 3049263 D hypothetical protein 3049150..3049263 Hyphomicrobium denitrificans ATCC 51888 9388863 YP_003757067.1 CDS Hden_2951 NC_014313.1 3049260 3051713 D KEGG: ret:RHE_CH01782 nitrite reductase [NAD(P)H], large subunit protein; TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite reductase (NAD(P)H), large subunit 3049260..3051713 Hyphomicrobium denitrificans ATCC 51888 9388864 YP_003757068.1 CDS Hden_2952 NC_014313.1 3051718 3052047 D KEGG: mlo:mlr2863 nitrite reductase small subunit; TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (NAD(P)H), small subunit 3051718..3052047 Hyphomicrobium denitrificans ATCC 51888 9388865 YP_003757069.1 CDS Hden_2953 NC_014313.1 3052059 3054719 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rlg:Rleg_1627 molybdopterin oxidoreductase; molybdopterin oxidoreductase 3052059..3054719 Hyphomicrobium denitrificans ATCC 51888 9388866 YP_003757070.1 CDS Hden_2954 NC_014313.1 3055128 3055526 R KEGG: bra:BRADO6362 hypothetical protein; hypothetical protein complement(3055128..3055526) Hyphomicrobium denitrificans ATCC 51888 9388867 YP_003757071.1 CDS Hden_2955 NC_014313.1 3055582 3056187 R KEGG: cyh:Cyan8802_3578 hypothetical protein; hypothetical protein complement(3055582..3056187) Hyphomicrobium denitrificans ATCC 51888 9388868 YP_003757072.1 CDS Hden_2956 NC_014313.1 3056194 3056493 R KEGG: pcs:Pc18g03770 Pc18g03770; hypothetical protein complement(3056194..3056493) Hyphomicrobium denitrificans ATCC 51888 9388869 YP_003757073.1 CDS Hden_2957 NC_014313.1 3056490 3056885 R KEGG: met:M446_0272 methyl-accepting chemotaxis sensory transducer; hypothetical protein complement(3056490..3056885) Hyphomicrobium denitrificans ATCC 51888 9388870 YP_003757074.1 CDS Hden_2958 NC_014313.1 3056885 3057766 R PFAM: protein of unknown function DUF847; peptidoglycan binding domain; KEGG: xau:Xaut_3175 hypothetical protein; hypothetical protein complement(3056885..3057766) Hyphomicrobium denitrificans ATCC 51888 9388871 YP_003757075.1 CDS Hden_2959 NC_014313.1 3057936 3060218 R KEGG: mag:amb4275 hypothetical protein; hypothetical protein complement(3057936..3060218) Hyphomicrobium denitrificans ATCC 51888 9388872 YP_003757076.1 CDS Hden_2960 NC_014313.1 3060221 3060430 R KEGG: pgu:PGUG_00526 hypothetical protein; hypothetical protein complement(3060221..3060430) Hyphomicrobium denitrificans ATCC 51888 9388873 YP_003757077.1 CDS Hden_2961 NC_014313.1 3060430 3061404 R KEGG: oan:Oant_2297 phage-related tail fibre protein-like protein; hypothetical protein complement(3060430..3061404) Hyphomicrobium denitrificans ATCC 51888 9388874 YP_003757078.1 CDS Hden_2962 NC_014313.1 3061408 3064029 R KEGG: dvu:DVU2153 tail fiber protein; hypothetical protein complement(3061408..3064029) Hyphomicrobium denitrificans ATCC 51888 9388875 YP_003757079.1 CDS Hden_2963 NC_014313.1 3064041 3064430 D KEGG: hvo:HVO_1134 hypothetical protein; hypothetical protein 3064041..3064430 Hyphomicrobium denitrificans ATCC 51888 9388876 YP_003757080.1 CDS Hden_2964 NC_014313.1 3064436 3064915 R KEGG: ppr:PBPRB1275 hypothetical protein; hypothetical protein complement(3064436..3064915) Hyphomicrobium denitrificans ATCC 51888 9388877 YP_003757081.1 CDS Hden_2965 NC_014313.1 3064915 3065265 R KEGG: sfu:Sfum_1890 hypothetical protein; hypothetical protein complement(3064915..3065265) Hyphomicrobium denitrificans ATCC 51888 9388878 YP_003757082.1 CDS Hden_2966 NC_014313.1 3065271 3067382 R PFAM: Phage tail tape measure protein, conserved region; KEGG: dvu:DVU2157 tail tape measure protein; Phage tail tape measure protein, conserved region complement(3065271..3067382) Hyphomicrobium denitrificans ATCC 51888 9388879 YP_003757083.1 CDS Hden_2967 NC_014313.1 3067375 3067608 R hypothetical protein complement(3067375..3067608) Hyphomicrobium denitrificans ATCC 51888 9388880 YP_003757084.1 CDS Hden_2968 NC_014313.1 3067605 3067985 R KEGG: hmu:Hmuk_0465 D12 class N6 adenine-specific DNA methyltransferase; hypothetical protein complement(3067605..3067985) Hyphomicrobium denitrificans ATCC 51888 9388881 YP_003757085.1 CDS Hden_2969 NC_014313.1 3068004 3068474 R KEGG: mpo:Mpop_5468 hypothetical protein; hypothetical protein complement(3068004..3068474) Hyphomicrobium denitrificans ATCC 51888 9388882 YP_003757086.1 CDS Hden_2970 NC_014313.1 3068487 3068882 R KEGG: ppw:PputW619_3937 hypothetical protein; hypothetical protein complement(3068487..3068882) Hyphomicrobium denitrificans ATCC 51888 9388883 YP_003757087.1 CDS Hden_2971 NC_014313.1 3068969 3069484 R TIGRFAM: phage protein, HK97 gp10 family; KEGG: ppw:PputW619_3938 HK97 family phage protein; phage protein, HK97 gp10 family complement(3068969..3069484) Hyphomicrobium denitrificans ATCC 51888 9388884 YP_003757088.1 CDS Hden_2972 NC_014313.1 3069481 3069816 R KEGG: vap:Vapar_2478 head-tail adaptor protein; TIGRFAM: phage head-tail adaptor; PFAM: head-tail adaptor protein; phage head-tail adaptor complement(3069481..3069816) Hyphomicrobium denitrificans ATCC 51888 9388885 YP_003757089.1 CDS Hden_2973 NC_014313.1 3069816 3070391 R KEGG: smd:Smed_1332 phiE125 gp8 hypothetical protein; phiE125 gp8 hypothetical protein complement(3069816..3070391) Hyphomicrobium denitrificans ATCC 51888 9388886 YP_003757090.1 CDS Hden_2974 NC_014313.1 3070395 3070772 R KEGG: zro:ZYRO0G05214g hypothetical protein; hypothetical protein complement(3070395..3070772) Hyphomicrobium denitrificans ATCC 51888 9388887 YP_003757091.1 CDS Hden_2975 NC_014313.1 3070804 3071217 R KEGG: smd:Smed_1328 hypothetical protein; hypothetical protein complement(3070804..3071217) Hyphomicrobium denitrificans ATCC 51888 9388888 YP_003757092.1 CDS Hden_2976 NC_014313.1 3071259 3071735 R KEGG: cfa:484298 SAPS domain family, member 1; hypothetical protein complement(3071259..3071735) Hyphomicrobium denitrificans ATCC 51888 9388889 YP_003757093.1 CDS Hden_2977 NC_014313.1 3071853 3072305 R KEGG: mpt:Mpe_A0539 hypothetical protein; hypothetical protein complement(3071853..3072305) Hyphomicrobium denitrificans ATCC 51888 9388890 YP_003757094.1 CDS Hden_2978 NC_014313.1 3072409 3073911 R KEGG: rpe:RPE_1908 HK97 family phage major capsid protein; TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; phage major capsid protein, HK97 family complement(3072409..3073911) Hyphomicrobium denitrificans ATCC 51888 9388891 YP_003757095.1 CDS Hden_2979 NC_014313.1 3073958 3074572 R KEGG: sit:TM1040_1060 peptidase U35, phage prohead HK97; TIGRFAM: phage prohead protease HK97 family; PFAM: peptidase U35 phage prohead HK97; phage prohead protease HK97 family complement(3073958..3074572) Hyphomicrobium denitrificans ATCC 51888 9388892 YP_003757096.1 CDS Hden_2980 NC_014313.1 3074608 3075441 R KEGG: bmv:BMASAVP1_0977 hypothetical protein; hypothetical protein complement(3074608..3075441) Hyphomicrobium denitrificans ATCC 51888 9388893 YP_003757097.1 CDS Hden_2981 NC_014313.1 3075464 3075742 R KEGG: pno:SNOG_03883 hypothetical protein; hypothetical protein complement(3075464..3075742) Hyphomicrobium denitrificans ATCC 51888 9388894 YP_003757098.1 CDS Hden_2982 NC_014313.1 3075724 3075996 R KEGG: gbm:Gbem_0197 hypothetical protein; hypothetical protein complement(3075724..3075996) Hyphomicrobium denitrificans ATCC 51888 9388895 YP_003757099.1 CDS Hden_2983 NC_014313.1 3075993 3077339 R KEGG: dvl:Dvul_0869 HK97 family phage portal protein; TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; phage portal protein, HK97 family complement(3075993..3077339) Hyphomicrobium denitrificans ATCC 51888 9388896 YP_003757100.1 CDS Hden_2984 NC_014313.1 3077362 3079074 R PFAM: terminase; KEGG: bcm:Bcenmc03_1289 terminase; terminase complement(3077362..3079074) Hyphomicrobium denitrificans ATCC 51888 9388897 YP_003757101.1 CDS Hden_2985 NC_014313.1 3079085 3079678 R KEGG: smd:Smed_1338 P27 family phage terminase small subunit; hypothetical protein complement(3079085..3079678) Hyphomicrobium denitrificans ATCC 51888 9388898 YP_003757102.1 CDS Hden_2986 NC_014313.1 3079819 3080208 R KEGG: pic:PICST_83083 hypothetical protein; hypothetical protein complement(3079819..3080208) Hyphomicrobium denitrificans ATCC 51888 9388899 YP_003757103.1 CDS Hden_2987 NC_014313.1 3080212 3080604 R KEGG: nwi:Nwi_1548 hypothetical protein; manually curated; SMART: HNH nuclease; HNH nuclease complement(3080212..3080604) Hyphomicrobium denitrificans ATCC 51888 9388900 YP_003757104.1 CDS Hden_2988 NC_014313.1 3080903 3081349 R KEGG: pap:PSPA7_2885 transcriptional regulator; hypothetical protein complement(3080903..3081349) Hyphomicrobium denitrificans ATCC 51888 9388901 YP_003757105.1 CDS Hden_2989 NC_014313.1 3081349 3081678 R PFAM: hypothetical protein; KEGG: bpt:Bpet0961 hypothetical protein; hypothetical protein complement(3081349..3081678) Hyphomicrobium denitrificans ATCC 51888 9388902 YP_003757106.1 CDS Hden_2990 NC_014313.1 3082212 3082442 D KEGG: sil:SPOA0436 alpha/beta fold family hydrolase; hypothetical protein 3082212..3082442 Hyphomicrobium denitrificans ATCC 51888 9388903 YP_003757107.1 CDS Hden_2991 NC_014313.1 3082748 3083959 D KEGG: cre:CHLREDRAFT_150664 RING hypothetical protein; hypothetical protein 3082748..3083959 Hyphomicrobium denitrificans ATCC 51888 9388904 YP_003757108.1 CDS Hden_2992 NC_014313.1 3084060 3084296 R KEGG: afn:Acfer_0837 hypothetical protein; hypothetical protein complement(3084060..3084296) Hyphomicrobium denitrificans ATCC 51888 9388905 YP_003757109.1 CDS Hden_2993 NC_014313.1 3084416 3084925 R KEGG: tca:662157 similar to CG1303-PA; hypothetical protein complement(3084416..3084925) Hyphomicrobium denitrificans ATCC 51888 9388906 YP_003757110.1 CDS Hden_2994 NC_014313.1 3085026 3085640 R KEGG: tcu:Tcur_2837 kinetoplast-associated protein-like protein; hypothetical protein complement(3085026..3085640) Hyphomicrobium denitrificans ATCC 51888 9388907 YP_003757111.1 CDS Hden_2995 NC_014313.1 3085652 3086128 R KEGG: mkm:Mkms_5935 hypothetical protein; hypothetical protein complement(3085652..3086128) Hyphomicrobium denitrificans ATCC 51888 9388908 YP_003757112.1 CDS Hden_2996 NC_014313.1 3086125 3086580 R KEGG: rlt:Rleg2_3568 hypothetical protein; hypothetical protein complement(3086125..3086580) Hyphomicrobium denitrificans ATCC 51888 9388909 YP_003757113.1 CDS Hden_2997 NC_014313.1 3086577 3086960 R KEGG: nmg:Nmag_3240 pyrrolo-quinoline quinone; hypothetical protein complement(3086577..3086960) Hyphomicrobium denitrificans ATCC 51888 9388910 YP_003757114.1 CDS Hden_2998 NC_014313.1 3087118 3087393 R KEGG: kfl:Kfla_3820 hypothetical protein; hypothetical protein complement(3087118..3087393) Hyphomicrobium denitrificans ATCC 51888 9388911 YP_003757115.1 CDS Hden_2999 NC_014313.1 3087390 3087659 R KEGG: afw:Anae109_0602 regulatory protein ArsR; transcriptional regulator complement(3087390..3087659) Hyphomicrobium denitrificans ATCC 51888 9388912 YP_003757116.1 CDS Hden_3000 NC_014313.1 3087659 3088006 R KEGG: xcb:XC_2014 hypothetical protein; hypothetical protein complement(3087659..3088006) Hyphomicrobium denitrificans ATCC 51888 9388913 YP_003757117.1 CDS Hden_3001 NC_014313.1 3088003 3088881 R KEGG: xau:Xaut_3623 hypothetical protein; hypothetical protein complement(3088003..3088881) Hyphomicrobium denitrificans ATCC 51888 9388914 YP_003757118.1 CDS Hden_3002 NC_014313.1 3088887 3089399 R KEGG: htu:Htur_3193 RecA-superfamily ATPase implicated in signal transduction-like protein; hypothetical protein complement(3088887..3089399) Hyphomicrobium denitrificans ATCC 51888 9388915 YP_003757119.1 CDS Hden_3003 NC_014313.1 3089396 3089641 R hypothetical protein complement(3089396..3089641) Hyphomicrobium denitrificans ATCC 51888 9388916 YP_003757120.1 CDS Hden_3004 NC_014313.1 3089641 3090021 R KEGG: bta:785824 hypothetical protein LOC785824; hypothetical protein complement(3089641..3090021) Hyphomicrobium denitrificans ATCC 51888 9388917 YP_003757121.1 CDS Hden_3005 NC_014313.1 3090041 3090724 R KEGG: sbi:SORBI_02g043560 hypothetical protein; hypothetical protein complement(3090041..3090724) Hyphomicrobium denitrificans ATCC 51888 9388918 YP_003757122.1 CDS Hden_3006 NC_014313.1 3090721 3090984 R hypothetical protein complement(3090721..3090984) Hyphomicrobium denitrificans ATCC 51888 9388919 YP_003757123.1 CDS Hden_3007 NC_014313.1 3090981 3091247 R KEGG: FHA domain-containing protein; hypothetical protein complement(3090981..3091247) Hyphomicrobium denitrificans ATCC 51888 9388920 YP_003757124.1 CDS Hden_3008 NC_014313.1 3091297 3091689 R PFAM: protein of unknown function DUF2312; KEGG: pzu:PHZ_c3117 hypothetical protein; hypothetical protein complement(3091297..3091689) Hyphomicrobium denitrificans ATCC 51888 9388921 YP_003757125.1 CDS Hden_3009 NC_014313.1 3091689 3092144 R KEGG: prw:PsycPRwf_0036 pseudouridine synthase; hypothetical protein complement(3091689..3092144) Hyphomicrobium denitrificans ATCC 51888 9388922 YP_003757126.1 CDS Hden_3010 NC_014313.1 3092160 3093911 R KEGG: pfs:pQBR0371 helicase; PFAM: SNF2-related protein; SMART: DEAD-like helicase; SNF2-like protein complement(3092160..3093911) Hyphomicrobium denitrificans ATCC 51888 9388923 YP_003757127.1 CDS Hden_3011 NC_014313.1 3093908 3094708 R KEGG: mag:amb2052 hypothetical protein; hypothetical protein complement(3093908..3094708) Hyphomicrobium denitrificans ATCC 51888 9388924 YP_003757128.1 CDS Hden_3012 NC_014313.1 3094705 3095061 R KEGG: pfs:pQBR0370 hypothetical protein; hypothetical protein complement(3094705..3095061) Hyphomicrobium denitrificans ATCC 51888 9388925 YP_003757129.1 CDS Hden_3013 NC_014313.1 3095058 3095672 R PFAM: MT-A70 family protein; KEGG: rsh:Rsph17029_0660 MT-A70 family protein; MT-A70 family protein complement(3095058..3095672) Hyphomicrobium denitrificans ATCC 51888 9388926 YP_003757130.1 CDS Hden_3014 NC_014313.1 3095669 3096037 R KEGG: sgr:SGR_4109 L-aspartate oxidase; hypothetical protein complement(3095669..3096037) Hyphomicrobium denitrificans ATCC 51888 9388927 YP_003757131.1 CDS Hden_3015 NC_014313.1 3096034 3097680 R PFAM: C-5 cytosine-specific DNA methylase; KEGG: slt:Slit_1955 C-5 cytosine-specific DNA methylase; C-5 cytosine-specific DNA methylase complement(3096034..3097680) Hyphomicrobium denitrificans ATCC 51888 9388928 YP_003757132.1 CDS Hden_3016 NC_014313.1 3097677 3097883 R KEGG: ank:AnaeK_1326 integrase catalytic region; hypothetical protein complement(3097677..3097883) Hyphomicrobium denitrificans ATCC 51888 9388929 YP_003757133.1 CDS Hden_3017 NC_014313.1 3097880 3098101 R KEGG: ptr:737498 transmembrane and ubiquitin-like domain containing 1; transmembrane and ubiquitin-like domain containing 1 complement(3097880..3098101) Hyphomicrobium denitrificans ATCC 51888 9388930 YP_003757134.1 CDS Hden_3018 NC_014313.1 3098105 3098383 R KEGG: xau:Xaut_4514 hypothetical protein; hypothetical protein complement(3098105..3098383) Hyphomicrobium denitrificans ATCC 51888 9388931 YP_003757135.1 CDS Hden_3019 NC_014313.1 3098380 3098544 R hypothetical protein complement(3098380..3098544) Hyphomicrobium denitrificans ATCC 51888 9388932 YP_003757136.1 CDS Hden_3020 NC_014313.1 3098541 3098798 R KEGG: maq:Maqu_0118 hypothetical protein; hypothetical protein complement(3098541..3098798) Hyphomicrobium denitrificans ATCC 51888 9388933 YP_003757137.1 CDS Hden_3021 NC_014313.1 3098795 3099082 R KEGG: sco:SCO1278 ATP/GTP-binding protein; hypothetical protein complement(3098795..3099082) Hyphomicrobium denitrificans ATCC 51888 9388934 YP_003757138.1 CDS Hden_3022 NC_014313.1 3099079 3099477 R KEGG: bbt:BBta_p0172 carbamoyltransferase HypF; hypothetical protein complement(3099079..3099477) Hyphomicrobium denitrificans ATCC 51888 9388935 YP_003757139.1 CDS Hden_3023 NC_014313.1 3099474 3100268 R manually curated; KEGG: mrd:Mrad2831_0002 chromosomal replication initiation protein; hypothetical protein complement(3099474..3100268) Hyphomicrobium denitrificans ATCC 51888 9388936 YP_003757140.1 CDS Hden_3024 NC_014313.1 3100461 3101255 R KEGG: dwi:Dwil_GK10250 GK10250 gene product from transcript GK10250-RA; hypothetical protein complement(3100461..3101255) Hyphomicrobium denitrificans ATCC 51888 9388937 YP_003757141.1 CDS Hden_3025 NC_014313.1 3101406 3101540 D hypothetical protein 3101406..3101540 Hyphomicrobium denitrificans ATCC 51888 9388938 YP_003757142.1 CDS Hden_3026 NC_014313.1 3101714 3102328 D KEGG: sjp:SJA_C1-26300 phage repressor; XRE family transcriptional regulator 3101714..3102328 Hyphomicrobium denitrificans ATCC 51888 9388939 YP_003757143.1 CDS Hden_3027 NC_014313.1 3102321 3102998 R KEGG: mno:Mnod_1018 exonuclease RNase T and DNA polymerase III; PFAM: exonuclease RNase T and DNA polymerase III; SMART: exonuclease; exonuclease RNase T and DNA polymerase III complement(3102321..3102998) Hyphomicrobium denitrificans ATCC 51888 9388940 YP_003757144.1 CDS Hden_3028 NC_014313.1 3103075 3103368 D KEGG: gau:GAU_0855 DNA-directed RNA polymerase beta subunit; hypothetical protein 3103075..3103368 Hyphomicrobium denitrificans ATCC 51888 9388941 YP_003757145.1 CDS Hden_3029 NC_014313.1 3103365 3103742 D KEGG: pmo:Pmob_0407 DNA methylase N-4/N-6 domain-containing protein; hypothetical protein 3103365..3103742 Hyphomicrobium denitrificans ATCC 51888 9388942 YP_003757146.1 CDS Hden_3030 NC_014313.1 3103739 3103978 D KEGG: fre:Franean1_0635 hypothetical protein; hypothetical protein 3103739..3103978 Hyphomicrobium denitrificans ATCC 51888 9388943 YP_003757147.1 CDS Hden_3031 NC_014313.1 3103975 3104673 D PFAM: porin; KEGG: mlo:mll1390 outer membrane protein; porin 3103975..3104673 Hyphomicrobium denitrificans ATCC 51888 9388944 YP_003757148.1 CDS Hden_3032 NC_014313.1 3104883 3106472 D PFAM: Resolvase domain; Recombinase; KEGG: nha:Nham_3864 recombinase; resolvase 3104883..3106472 Hyphomicrobium denitrificans ATCC 51888 9388945 YP_003757149.1 CDS Hden_3033 NC_014313.1 3107074 3107331 D hypothetical protein 3107074..3107331 Hyphomicrobium denitrificans ATCC 51888 9388947 YP_003757150.1 CDS Hden_3034 NC_014313.1 3107411 3107632 R hypothetical protein complement(3107411..3107632) Hyphomicrobium denitrificans ATCC 51888 9388948 YP_003757151.1 CDS Hden_3035 NC_014313.1 3107713 3107862 R KEGG: sma:SAV_4393 integral membrane protein; hypothetical protein complement(3107713..3107862) Hyphomicrobium denitrificans ATCC 51888 9388949 YP_003757152.1 CDS Hden_3036 NC_014313.1 3107905 3108588 R SMART: ATPase AAA; KEGG: nmu:Nmul_D2816 plasmid partition protein ParA-like; ATPase AAA complement(3107905..3108588) Hyphomicrobium denitrificans ATCC 51888 9388950 YP_003757153.1 CDS Hden_3037 NC_014313.1 3108814 3109359 R KEGG: hoh:Hoch_4667 hypothetical protein; hypothetical protein complement(3108814..3109359) Hyphomicrobium denitrificans ATCC 51888 9388951 YP_003757154.1 CDS Hden_3038 NC_014313.1 3109902 3110747 R TIGRFAM: lytic murein transglycosylase; KEGG: bra:BRADO4023 transglycolase; lytic murein transglycosylase complement(3109902..3110747) Hyphomicrobium denitrificans ATCC 51888 9388952 YP_003757155.1 CDS Hden_3039 NC_014313.1 3110780 3111181 R KEGG: ppa:PAS_chr4_0618 One of two type I myosins; hypothetical protein complement(3110780..3111181) Hyphomicrobium denitrificans ATCC 51888 9388953 YP_003757156.1 CDS Hden_3040 NC_014313.1 3111403 3111720 R KEGG: rpf:Rpic12D_1070 hypothetical protein; hypothetical protein complement(3111403..3111720) Hyphomicrobium denitrificans ATCC 51888 9388954 YP_003757157.1 CDS Hden_3041 NC_014313.1 3112168 3112635 D KEGG: bpt:Bpet0307 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; MarR family transcriptional regulator 3112168..3112635 Hyphomicrobium denitrificans ATCC 51888 9388955 YP_003757158.1 CDS Hden_3042 NC_014313.1 3112651 3114075 R PFAM: dihydropteroate synthase DHPS; KEGG: xau:Xaut_4100 dihydropteroate synthase DhpS; dihydropteroate synthase DHPS complement(3112651..3114075) Hyphomicrobium denitrificans ATCC 51888 9388956 YP_003757159.1 CDS Hden_3043 NC_014313.1 3114221 3114985 D TIGRFAM: precorrin-6A synthase (deacetylating); KEGG: pfo:Pfl01_2061 precorrin 6A synthase; PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-6A synthase 3114221..3114985 Hyphomicrobium denitrificans ATCC 51888 9388957 YP_003757160.1 CDS Hden_3044 NC_014313.1 3114987 3115904 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azl:AZL_c04930 transcriptional regulator; LysR family transcriptional regulator complement(3114987..3115904) Hyphomicrobium denitrificans ATCC 51888 9388958 YP_003757161.1 CDS Hden_3045 NC_014313.1 3116019 3116618 D KEGG: met:M446_2368 flavoprotein WrbA; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; flavoprotein WrbA 3116019..3116618 Hyphomicrobium denitrificans ATCC 51888 9388959 YP_003757162.1 CDS Hden_3046 NC_014313.1 3116745 3117680 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll3247 dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 3116745..3117680 Hyphomicrobium denitrificans ATCC 51888 9388960 YP_003757163.1 CDS Hden_3047 NC_014313.1 3117677 3118318 D PFAM: phospholipase/carboxylesterase; KEGG: sru:SRU_2742 phospholipase/carboxylesterase; phospholipase/carboxylesterase 3117677..3118318 Hyphomicrobium denitrificans ATCC 51888 9388961 YP_003757164.1 CDS Hden_3048 NC_014313.1 3118323 3118961 D KEGG: mms:mma_2479 hypothetical protein; PFAM: flavin reductase domain protein FMN-binding; SMART: flavin reductase domain protein FMN-binding; flavin reductase 3118323..3118961 Hyphomicrobium denitrificans ATCC 51888 9388962 YP_003757165.1 CDS Hden_3049 NC_014313.1 3118964 3120484 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rieske [2Fe-2S] iron-sulphur domain; KEGG: reh:H16_B0945 pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3118964..3120484) Hyphomicrobium denitrificans ATCC 51888 9388963 YP_003757166.1 CDS Hden_3050 NC_014313.1 3120505 3121032 R PFAM: ferritin; KEGG: rlt:Rleg2_4342 ferritin Dps family protein; ferritin complement(3120505..3121032) Hyphomicrobium denitrificans ATCC 51888 9388964 YP_003757167.1 CDS Hden_3051 NC_014313.1 3121399 3122565 R KEGG: msl:Msil_0130 ceramide glucosyltransferase; Ceramide glucosyltransferase complement(3121399..3122565) Hyphomicrobium denitrificans ATCC 51888 9388965 YP_003757168.1 CDS Hden_3052 NC_014313.1 3122688 3122951 R KEGG: mem:Memar_0248 hypothetical protein; hypothetical protein complement(3122688..3122951) Hyphomicrobium denitrificans ATCC 51888 9388966 YP_003757169.1 CDS Hden_3053 NC_014313.1 3123185 3123364 R hypothetical protein complement(3123185..3123364) Hyphomicrobium denitrificans ATCC 51888 9388967 YP_003757170.1 CDS Hden_3054 NC_014313.1 3123361 3123621 R KEGG: nwi:Nwi_2991 hypothetical protein; hypothetical protein complement(3123361..3123621) Hyphomicrobium denitrificans ATCC 51888 9388968 YP_003757171.1 CDS Hden_3055 NC_014313.1 3124018 3125349 D TIGRFAM: nucleotide sugar dehydrogenase; KEGG: pzu:PHZ_c2961 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase ; UDP-glucose/GDP-mannose dehydrogenase dimerisation; nucleotide sugar dehydrogenase 3124018..3125349 Hyphomicrobium denitrificans ATCC 51888 9388969 YP_003757172.1 CDS Hden_3056 NC_014313.1 3125560 3127653 D KEGG: msl:Msil_0049 flagellar biosynthesis protein FlhA; TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; flagellar biosynthesis protein FlhA 3125560..3127653 Hyphomicrobium denitrificans ATCC 51888 9388970 YP_003757173.1 CDS Hden_3057 NC_014313.1 3127650 3128414 D PFAM: type III secretion system inner membrane R protein; KEGG: bid:Bind_3589 flagellar biosynthesis protein FliR; type III secretion system inner membrane R protein 3127650..3128414 Hyphomicrobium denitrificans ATCC 51888 9388971 YP_003757174.1 CDS Hden_3058 NC_014313.1 3128407 3128823 D KEGG: rlg:Rleg_0379 hypothetical protein; hypothetical protein 3128407..3128823 Hyphomicrobium denitrificans ATCC 51888 9388972 YP_003757175.1 CDS Hden_3059 NC_014313.1 3128857 3129213 D PFAM: flagellar protein FlgJ-like; KEGG: bja:bll6849 hypothetical protein; flagellar protein FlgJ-like protein 3128857..3129213 Hyphomicrobium denitrificans ATCC 51888 9388973 YP_003757176.1 CDS Hden_3060 NC_014313.1 3129215 3129706 D KEGG: mes:Meso_0268 hypothetical protein; hypothetical protein 3129215..3129706 Hyphomicrobium denitrificans ATCC 51888 9388974 YP_003757177.1 CDS Hden_3061 NC_014313.1 3129703 3130170 D KEGG: mno:Mnod_6732 hypothetical protein; hypothetical protein 3129703..3130170 Hyphomicrobium denitrificans ATCC 51888 9388975 YP_003757178.1 CDS Hden_3062 NC_014313.1 3130154 3130720 D KEGG: msl:Msil_0055 hypothetical protein; hypothetical protein 3130154..3130720 Hyphomicrobium denitrificans ATCC 51888 9388976 YP_003757179.1 CDS Hden_3063 NC_014313.1 3130737 3131135 R KEGG: msl:Msil_1440 hypothetical protein; hypothetical protein complement(3130737..3131135) Hyphomicrobium denitrificans ATCC 51888 9388977 YP_003757180.1 CDS Hden_3064 NC_014313.1 3131160 3131708 R PFAM: CheD family protein; KEGG: ara:Arad_0855 chemoreceptor glutamine deamidase CheD; stimulates methylation of MCP proteins; chemotaxis protein CheD complement(3131160..3131708) Hyphomicrobium denitrificans ATCC 51888 9388978 YP_003757181.1 CDS Hden_3065 NC_014313.1 3131705 3132094 R KEGG: bid:Bind_3627 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(3131705..3132094) Hyphomicrobium denitrificans ATCC 51888 9388979 YP_003757182.1 CDS Hden_3066 NC_014313.1 3132104 3133153 R PFAM: CheB methylesterase; response regulator receiver; KEGG: pzu:PHZ_c3376 chemotaxis-specific methylesterase; SMART: response regulator receiver; chemotaxis protein CheB complement(3132104..3133153) Hyphomicrobium denitrificans ATCC 51888 9388980 YP_003757183.1 CDS Hden_3067 NC_014313.1 3133150 3134040 R PFAM: MCP methyltransferase CheR-type; KEGG: acr:Acry_2710 protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; chemotaxis protein CheR complement(3133150..3134040) Hyphomicrobium denitrificans ATCC 51888 9388981 YP_003757184.1 CDS Hden_3068 NC_014313.1 3134037 3134504 R KEGG: msl:Msil_1445 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein; chemotaxis protein CheW complement(3134037..3134504) Hyphomicrobium denitrificans ATCC 51888 9388982 YP_003757185.1 CDS Hden_3069 NC_014313.1 3134510 3136684 R KEGG: acr:Acry_2708 CheA signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; chemotaxis protein CheA complement(3134510..3136684) Hyphomicrobium denitrificans ATCC 51888 9388983 YP_003757186.1 CDS Hden_3070 NC_014313.1 3136709 3137071 R KEGG: response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(3136709..3137071) Hyphomicrobium denitrificans ATCC 51888 9388984 YP_003757187.1 CDS Hden_3071 NC_014313.1 3137071 3137526 R KEGG: virus protein; hypothetical protein complement(3137071..3137526) Hyphomicrobium denitrificans ATCC 51888 9388985 YP_003757188.1 CDS Hden_3072 NC_014313.1 3137526 3139856 R KEGG: pzu:PHZ_c3382 methyl-accepting chemotaxis protein McpA; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; methyl-accepting chemotaxis sensory transducer complement(3137526..3139856) Hyphomicrobium denitrificans ATCC 51888 9388986 YP_003757189.1 CDS Hden_3073 NC_014313.1 3140360 3140650 R KEGG: mpo:Mpop_0517 hypothetical protein; manually curated; PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(3140360..3140650) Hyphomicrobium denitrificans ATCC 51888 9388987 YP_003757190.1 CDS Hden_3074 NC_014313.1 3140957 3142672 D TIGRFAM: PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; KEGG: mch:Mchl_3001 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: EAL domain protein; PAC repeat-containing protein; PAS domain containing protein; diguanylate phosphodiesterase 3140957..3142672 Hyphomicrobium denitrificans ATCC 51888 9388988 YP_003757191.1 CDS Hden_3075 NC_014313.1 3142730 3143593 D PFAM: type IV pilus assembly PilZ; KEGG: swi:Swit_3968 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); type IV pilus assembly PilZ 3142730..3143593 Hyphomicrobium denitrificans ATCC 51888 9388989 YP_003757192.1 CDS Hden_3076 NC_014313.1 3143645 3144760 R SMART: GGDEF domain containing protein; TIGRFAM: diguanylate cyclase; KEGG: bra:BRADO3548 hypothetical protein; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(3143645..3144760) Hyphomicrobium denitrificans ATCC 51888 9388990 YP_003757193.1 CDS Hden_3077 NC_014313.1 3144940 3145209 R KEGG: azc:AZC_0653 flagellar biosynthesis protein FliQ; TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; flagellar biosynthetic protein FliQ complement(3144940..3145209) Hyphomicrobium denitrificans ATCC 51888 9388991 YP_003757194.1 CDS Hden_3078 NC_014313.1 3145206 3145616 R PFAM: flagellar hook capping protein; KEGG: bid:Bind_3552 flagellar basal body rod modification protein; flagellar hook capping protein complement(3145206..3145616) Hyphomicrobium denitrificans ATCC 51888 9388992 YP_003757195.1 CDS Hden_3079 NC_014313.1 3145613 3146029 R PFAM: flagellar FlbT family protein; KEGG: met:M446_6510 flagellar biosynthesis repressor FlbT; flagellar FlbT family protein complement(3145613..3146029) Hyphomicrobium denitrificans ATCC 51888 9388993 YP_003757196.1 CDS Hden_3080 NC_014313.1 3146029 3146373 R PFAM: flagellar FlaF family protein; KEGG: mes:Meso_0276 flagellar biosynthesis regulatory protein FlaF; flagellar FlaF family protein complement(3146029..3146373) Hyphomicrobium denitrificans ATCC 51888 9388994 YP_003757197.1 CDS Hden_3081 NC_014313.1 3146413 3147468 R PFAM: flagellar hook-associated 3 family protein; KEGG: bid:Bind_3555 flagellar hook-associated protein FlgL; flagellar hook-associated 3 family protein complement(3146413..3147468) Hyphomicrobium denitrificans ATCC 51888 9388995 YP_003757198.1 CDS Hden_3082 NC_014313.1 3147473 3148936 R KEGG: bja:bll6857 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar hook-associated protein FlgK complement(3147473..3148936) Hyphomicrobium denitrificans ATCC 51888 9388996 YP_003757199.1 CDS Hden_3083 NC_014313.1 3148965 3150218 R KEGG: mlo:mlr2937 flagellar hook protein FlgE; TIGRFAM: flagellar hook-basal body protein; PFAM: flagellar basal body FlaE domain protein; protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar hook-basal body protein complement(3148965..3150218) Hyphomicrobium denitrificans ATCC 51888 9388997 YP_003757200.1 CDS Hden_3084 NC_014313.1 3150163 3150993 R KEGG: ara:Arad_0907 two-component response regulator protein; PFAM: transcriptional regulator; SMART: transcriptional regulator domain protein; winged helix family two component transcriptional regulator complement(3150163..3150993) Hyphomicrobium denitrificans ATCC 51888 9388998 YP_003757201.1 CDS Hden_3085 NC_014313.1 3151326 3151742 D PFAM: type IV pilus assembly PilZ; KEGG: swi:Swit_3968 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); type IV pilus assembly PilZ 3151326..3151742 Hyphomicrobium denitrificans ATCC 51888 9388999 YP_003757202.1 CDS Hden_3086 NC_014313.1 3151822 3152265 D SMART: heat shock protein DnaJ domain protein; KEGG: bmb:BruAb1_0098 hypothetical protein; heat shock protein DnaJ domain-containing protein 3151822..3152265 Hyphomicrobium denitrificans ATCC 51888 9389000 YP_003757203.1 CDS Hden_3087 NC_014313.1 3152383 3152655 D KEGG: dda:Dd703_1767 histidine kinase; hypothetical protein 3152383..3152655 Hyphomicrobium denitrificans ATCC 51888 9389001 YP_003757204.1 CDS Hden_3088 NC_014313.1 3152579 3152932 R KEGG: ele:Elen_1721 ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; hypothetical protein complement(3152579..3152932) Hyphomicrobium denitrificans ATCC 51888 9389002 YP_003757205.1 CDS Hden_3089 NC_014313.1 3152944 3154428 R PFAM: flagellar hook-length control protein; KEGG: sme:SMc03044 chemotaxis protein (motility protein D); flagellar hook-length control protein complement(3152944..3154428) Hyphomicrobium denitrificans ATCC 51888 9389003 YP_003757206.1 CDS Hden_3090 NC_014313.1 3154425 3155699 R KEGG: azc:AZC_0624 chemotaxis protein MotC; hypothetical protein complement(3154425..3155699) Hyphomicrobium denitrificans ATCC 51888 9389004 YP_003757207.1 CDS Hden_3091 NC_014313.1 3155696 3156970 R PFAM: OmpA/MotB domain protein; KEGG: bja:bll6862 flagellar motor protein MotB; OmpA/MotB domain-containing protein complement(3155696..3156970) Hyphomicrobium denitrificans ATCC 51888 9389005 YP_003757208.1 CDS Hden_3092 NC_014313.1 3156967 3157554 R KEGG: met:M446_3224 hypothetical protein; hypothetical protein complement(3156967..3157554) Hyphomicrobium denitrificans ATCC 51888 9389006 YP_003757209.1 CDS Hden_3093 NC_014313.1 3157551 3159236 R KEGG: met:M446_3225 flagellar MS-ring protein; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; flagellar M-ring domain protein; flagellar M-ring protein FliF complement(3157551..3159236) Hyphomicrobium denitrificans ATCC 51888 9389007 YP_003757210.1 CDS Hden_3094 NC_014313.1 3159414 3160367 R PFAM: flagellin domain protein; KEGG: rpe:RPE_1165 flagellin; flagellin domain-containing protein complement(3159414..3160367) Hyphomicrobium denitrificans ATCC 51888 9389008 YP_003757211.1 CDS Hden_3095 NC_014313.1 3160587 3161330 R KEGG: bja:bll6867 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP complement(3160587..3161330) Hyphomicrobium denitrificans ATCC 51888 9389009 YP_003757212.1 CDS Hden_3096 NC_014313.1 3161327 3161839 R PFAM: flagellar basal body-associated protein FliL; KEGG: azc:AZC_0629 flagellar basal body-associated protein; flagellar basal body-associated protein FliL complement(3161327..3161839) Hyphomicrobium denitrificans ATCC 51888 9389010 YP_003757213.1 CDS Hden_3097 NC_014313.1 3161852 3162592 R PFAM: flagellar L-ring protein; KEGG: msl:Msil_0031 flagellar L-ring protein; flagellar L-ring protein complement(3161852..3162592) Hyphomicrobium denitrificans ATCC 51888 9389011 YP_003757214.1 CDS Hden_3098 NC_014313.1 3162576 3163181 R KEGG: bja:bll6870 hypothetical protein; hypothetical protein complement(3162576..3163181) Hyphomicrobium denitrificans ATCC 51888 9389012 YP_003757215.1 CDS Hden_3099 NC_014313.1 3163178 3164281 R PFAM: flagellar P-ring protein; KEGG: bja:bll6871 flagellar basal body P-ring protein; flagellar P-ring protein complement(3163178..3164281) Hyphomicrobium denitrificans ATCC 51888 9389013 YP_003757216.1 CDS Hden_3100 NC_014313.1 3164278 3164739 R TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: mes:Meso_0294 flagellar protein FlgA; SMART: SAF domain protein; flagella basal body P-ring formation protein FlgA complement(3164278..3164739) Hyphomicrobium denitrificans ATCC 51888 9389014 YP_003757217.1 CDS Hden_3101 NC_014313.1 3164736 3165524 R KEGG: rhi:NGR_c02770 flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgG complement(3164736..3165524) Hyphomicrobium denitrificans ATCC 51888 9389015 YP_003757218.1 CDS Hden_3102 NC_014313.1 3165536 3165862 R PFAM: flagellar hook-basal body complex protein FliE; KEGG: azc:AZC_0635 flagellar hook-basal body protein FliE; flagellar hook-basal body complex protein FliE complement(3165536..3165862) Hyphomicrobium denitrificans ATCC 51888 9389016 YP_003757219.1 CDS Hden_3103 NC_014313.1 3165859 3166278 R KEGG: msl:Msil_0025 flagellar basal body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; flagellar basal-body rod protein FlgC complement(3165859..3166278) Hyphomicrobium denitrificans ATCC 51888 9389017 YP_003757220.1 CDS Hden_3104 NC_014313.1 3166281 3166658 R PFAM: flagellar basal body rod protein; KEGG: rpc:RPC_1094 flagellar basal body rod protein FlgB; flagellar basal body rod protein complement(3166281..3166658) Hyphomicrobium denitrificans ATCC 51888 9389018 YP_003757221.1 CDS Hden_3105 NC_014313.1 3166766 3167188 R KEGG: bmt:BSUIS_B0126 hypothetical protein; hypothetical protein complement(3166766..3167188) Hyphomicrobium denitrificans ATCC 51888 9389019 YP_003757222.1 CDS Hden_3106 NC_014313.1 3167202 3168284 R PFAM: type III secretion exporter; KEGG: met:M446_3217 flagellar biosynthesis protein FlhB; type III secretion exporter complement(3167202..3168284) Hyphomicrobium denitrificans ATCC 51888 9389020 YP_003757223.1 CDS Hden_3107 NC_014313.1 3168308 3169318 R PFAM: flagellar motor switch protein FliG; KEGG: msl:Msil_0021 flagellar motor switch protein FliG; flagellar motor switch protein FliG complement(3168308..3169318) Hyphomicrobium denitrificans ATCC 51888 9389021 YP_003757224.1 CDS Hden_3108 NC_014313.1 3169328 3169750 R PFAM: surface presentation of antigens (SPOA) protein; KEGG: mch:Mchl_0650 flagellar motor switch protein FliN; surface presentation of antigens (SPOA) protein complement(3169328..3169750) Hyphomicrobium denitrificans ATCC 51888 9389022 YP_003757225.1 CDS Hden_3109 NC_014313.1 3169849 3170817 R PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: met:M446_3213 flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein complement(3169849..3170817) Hyphomicrobium denitrificans ATCC 51888 9389023 YP_003757226.1 CDS Hden_3110 NC_014313.1 3170903 3171823 R KEGG: mlo:mll2905 flagellar motor protein MotA; flagellar motor protein MotA complement(3170903..3171823) Hyphomicrobium denitrificans ATCC 51888 9389024 YP_003757227.1 CDS Hden_3111 NC_014313.1 3171972 3172694 D KEGG: bid:Bind_2810 flagellar basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; flagellar hook-basal body protein; PFAM: flagellar basal body rod protein; flagellar basal-body rod protein FlgF 3171972..3172694 Hyphomicrobium denitrificans ATCC 51888 9389025 YP_003757228.1 CDS Hden_3112 NC_014313.1 3172714 3174084 D TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; KEGG: msl:Msil_1657 flagellum-specific ATP synthase; SMART: ATPase AAA; ATPase, FliI/YscN family 3172714..3174084 Hyphomicrobium denitrificans ATCC 51888 9389026 YP_003757229.1 CDS Hden_3113 NC_014313.1 3174730 3175440 R PFAM: glycoside hydrolase family 24; KEGG: ere:EUBREC_2755 phage-related lysozyme; glycoside hydrolase family 24 complement(3174730..3175440) Hyphomicrobium denitrificans ATCC 51888 9389027 YP_003757230.1 CDS Hden_3114 NC_014313.1 3175504 3176736 R KEGG: rce:RC1_0504 hypothetical protein; PFAM: CBS domain containing protein; haloacid dehalogenase; SMART: CBS domain containing protein; signal transduction protein with CBS domains complement(3175504..3176736) Hyphomicrobium denitrificans ATCC 51888 9389028 YP_003757231.1 CDS Hden_3115 NC_014313.1 3176941 3177906 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: xau:Xaut_4699 LysR family transcriptional regulator; LysR family transcriptional regulator complement(3176941..3177906) Hyphomicrobium denitrificans ATCC 51888 9389029 YP_003757232.1 CDS Hden_3116 NC_014313.1 3178024 3179283 D KEGG: gbe:GbCGDNIH1_0177 sarcosine oxidase beta subunit; TIGRFAM: sarcosine oxidase subunit beta family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta family 3178024..3179283 Hyphomicrobium denitrificans ATCC 51888 9389030 YP_003757233.1 CDS Hden_3117 NC_014313.1 3179297 3179593 D PFAM: Sarcosine oxidase subunit delta heterotetrameric; KEGG: xau:Xaut_4701 sarcosine oxidase subunit delta heterotetrameric; Sarcosine oxidase subunit delta heterotetrameric 3179297..3179593 Hyphomicrobium denitrificans ATCC 51888 9389031 YP_003757234.1 CDS Hden_3118 NC_014313.1 3179590 3182574 D KEGG: azl:AZL_a09570 sarcosine oxidase subunit alpha; TIGRFAM: sarcosine oxidase subunit alpha family; PFAM: glycine cleavage T protein (aminomethyl transferase); HI0933 family protein; sarcosine oxidase subunit alpha family 3179590..3182574 Hyphomicrobium denitrificans ATCC 51888 9389032 YP_003757235.1 CDS Hden_3119 NC_014313.1 3182567 3183121 D PFAM: Sarcosine oxidase subunit gamma; KEGG: mdi:METDI2319 sarcosine oxidase subunit gamma; Sarcosine oxidase subunit gamma 3182567..3183121 Hyphomicrobium denitrificans ATCC 51888 9389033 YP_003757236.1 CDS Hden_3120 NC_014313.1 3183250 3183903 D KEGG: xau:Xaut_4694 XRE family transcriptional regulator; PFAM: hypothetical protein; Cupin 2 conserved barrel domain protein; SMART: hypothetical protein; XRE family transcriptional regulator 3183250..3183903 Hyphomicrobium denitrificans ATCC 51888 9389034 YP_003757237.1 CDS Hden_3121 NC_014313.1 3184124 3185860 D PFAM: sulfatase; KEGG: rpe:RPE_2198 sulfatase; sulfatase 3184124..3185860 Hyphomicrobium denitrificans ATCC 51888 9389035 YP_003757238.1 CDS Hden_3122 NC_014313.1 3185985 3187157 D KEGG: mex:Mext_1925 hypothetical protein; PFAM: domain of unknown function DUF1745; FIST C domain; SMART: domain of unknown function DUF1745; hypothetical protein 3185985..3187157 Hyphomicrobium denitrificans ATCC 51888 9389036 YP_003757239.1 CDS Hden_3123 NC_014313.1 3187154 3188518 D KEGG: mlo:mlr1132 two-component sensor; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase 3187154..3188518 Hyphomicrobium denitrificans ATCC 51888 9389037 YP_003757240.1 CDS Hden_3124 NC_014313.1 3188522 3189199 R KEGG: mlo:mll1133 two-component response regulator; PFAM: regulatory protein LuxR; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator complement(3188522..3189199) Hyphomicrobium denitrificans ATCC 51888 9389038 YP_003757241.1 CDS Hden_3125 NC_014313.1 3189203 3189436 R KEGG: rno:24826 thyroglobulin; thyroglobulin complement(3189203..3189436) Hyphomicrobium denitrificans ATCC 51888 9389039 YP_003757242.1 CDS Hden_3126 NC_014313.1 3189454 3190905 R KEGG: nha:Nham_1427 hypothetical protein; hypothetical protein complement(3189454..3190905) Hyphomicrobium denitrificans ATCC 51888 9389040 YP_003757243.1 CDS Hden_3127 NC_014313.1 3191058 3192062 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: maq:Maqu_1687 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3191058..3192062 Hyphomicrobium denitrificans ATCC 51888 9389041 YP_003757244.1 CDS Hden_3128 NC_014313.1 3192072 3194537 R TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase; helicase-associated domain protein; KEGG: met:M446_6547 ATP-dependent helicase HrpB; SMART: helicase-associated domain protein; helicase; DEAD-like helicase; ATP-dependent helicase HrpB complement(3192072..3194537) Hyphomicrobium denitrificans ATCC 51888 9389042 YP_003757245.1 CDS Hden_3129 NC_014313.1 3194552 3195223 R TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: mes:Meso_0005 ribulose-5-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(3194552..3195223) Hyphomicrobium denitrificans ATCC 51888 9389043 YP_003757246.1 CDS Hden_3130 NC_014313.1 3195267 3196142 R KEGG: bra:BRADO1656 phosphoribulokinase (phosphopentokinase) (PRKase) (PRK); PFAM: phosphoribulokinase/uridine kinase; phosphoribulokinase complement(3195267..3196142) Hyphomicrobium denitrificans ATCC 51888 9389044 YP_003757247.1 CDS Hden_3131 NC_014313.1 3196187 3197230 R PFAM: inositol phosphatase/fructose-16-bisphosphatase; KEGG: nha:Nham_3754 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase complement(3196187..3197230) Hyphomicrobium denitrificans ATCC 51888 9389045 YP_003757248.1 CDS Hden_3132 NC_014313.1 3197481 3198212 R PFAM: 20S proteasome A and subunit betas; KEGG: mlo:mll0713 hypothetical protein; 20S proteasome subunits A and B complement(3197481..3198212) Hyphomicrobium denitrificans ATCC 51888 9389046 YP_003757249.1 CDS Hden_3133 NC_014313.1 3198233 3199045 R KEGG: pde:Pden_0825 transglutaminase domain-containing protein; PFAM: transglutaminase; transglutaminase domain protein; SMART: transglutaminase; transglutaminase complement(3198233..3199045) Hyphomicrobium denitrificans ATCC 51888 9389047 YP_003757250.1 CDS Hden_3134 NC_014313.1 3199056 3200003 R PFAM: protein of unknown function DUF403; KEGG: mlo:mll0716 hypothetical protein; hypothetical protein complement(3199056..3200003) Hyphomicrobium denitrificans ATCC 51888 9389048 YP_003757251.1 CDS Hden_3135 NC_014313.1 3200011 3201426 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: oan:Oant_3524 hypothetical protein; hypothetical protein complement(3200011..3201426) Hyphomicrobium denitrificans ATCC 51888 9389049 YP_003757252.1 CDS Hden_3136 NC_014313.1 3201592 3203268 R KEGG: rhi:NGR_c23560 formate-tetrahydrofolate ligase; PFAM: formate-tetrahydrofolate ligase FTHFS; formate--tetrahydrofolate ligase complement(3201592..3203268) Hyphomicrobium denitrificans ATCC 51888 9389050 YP_003757253.1 CDS Hden_3137 NC_014313.1 3203672 3204145 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ote:Oter_3339 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3203672..3204145) Hyphomicrobium denitrificans ATCC 51888 9389051 YP_003757254.1 CDS Hden_3138 NC_014313.1 3204365 3205081 D KEGG: hhe:HH1626 dihydrodipicolinate synthase; hypothetical protein 3204365..3205081 Hyphomicrobium denitrificans ATCC 51888 9389052 YP_003757255.1 CDS Hden_3139 NC_014313.1 3205315 3205503 D KEGG: bja:bll1285 hypothetical protein; hypothetical protein 3205315..3205503 Hyphomicrobium denitrificans ATCC 51888 9389053 YP_003757256.1 CDS Hden_3140 NC_014313.1 3205581 3206369 R SMART: protein phosphatase 2C domain protein; KEGG: jan:Jann_4143 protein serine/threonine phosphatases; protein serine/threonine phosphatase complement(3205581..3206369) Hyphomicrobium denitrificans ATCC 51888 9389054 YP_003757257.1 CDS Hden_3141 NC_014313.1 3206377 3207171 R PFAM: Forkhead-associated protein; KEGG: jan:Jann_1605 FHA domain-containing protein; FHA domain containing protein complement(3206377..3207171) Hyphomicrobium denitrificans ATCC 51888 9389055 YP_003757258.1 CDS Hden_3142 NC_014313.1 3207272 3207907 R KEGG: mxa:MXAN_5591 FHA domain-TPR-repeat-containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; FHA domain containing protein complement(3207272..3207907) Hyphomicrobium denitrificans ATCC 51888 9389056 YP_003757259.1 CDS Hden_3143 NC_014313.1 3208156 3210489 D KEGG: app:CAP2UW1_3021 serine/threonine protein kinase; PFAM: serine/threonine-protein kinase-like domain; WD40 repeat, subgroup; SMART: hypothetical protein; serine/threonine-protein kinase-like domain-containing protein 3208156..3210489 Hyphomicrobium denitrificans ATCC 51888 9389057 YP_003757260.1 CDS Hden_3144 NC_014313.1 3210584 3211987 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: mes:Meso_4066 cytochrome bd ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 3210584..3211987 Hyphomicrobium denitrificans ATCC 51888 9389058 YP_003757261.1 CDS Hden_3145 NC_014313.1 3211992 3213008 D KEGG: mes:Meso_4065 cytochrome d ubiquinol oxidase subunit II; TIGRFAM: cytochrome d ubiquinol oxidase subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II 3211992..3213008 Hyphomicrobium denitrificans ATCC 51888 9389059 YP_003757262.1 CDS Hden_3146 NC_014313.1 3213137 3214297 D SMART: nuclease (SNase domain protein); KEGG: rde:RD1_A0063 succinoglycan biosynthesis protein ExoI; nuclease 3213137..3214297 Hyphomicrobium denitrificans ATCC 51888 9389060 YP_003757263.1 CDS Hden_3147 NC_014313.1 3214802 3216097 D KEGG: cyn:Cyan7425_0683 hypothetical protein; hypothetical protein 3214802..3216097 Hyphomicrobium denitrificans ATCC 51888 9389061 YP_003757264.1 CDS Hden_3148 NC_014313.1 3216284 3217426 D PFAM: fatty acid desaturase; KEGG: pla:Plav_3282 fatty acid desaturase; fatty acid desaturase 3216284..3217426 Hyphomicrobium denitrificans ATCC 51888 9389062 YP_003757265.1 CDS Hden_3149 NC_014313.1 3217450 3218397 D KEGG: tbd:Tbd_1270 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific 3217450..3218397 Hyphomicrobium denitrificans ATCC 51888 9389063 YP_003757266.1 CDS Hden_3150 NC_014313.1 3218417 3221272 R KEGG: eli:ELI_00525 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(3218417..3221272) Hyphomicrobium denitrificans ATCC 51888 9389064 YP_003757267.1 CDS Hden_3151 NC_014313.1 3221379 3222278 R TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: CoA-binding protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: rhi:NGR_c26250 succinyl-CoA synthetase subunit alpha; SMART: CoA-binding domain protein; succinyl-CoA synthetase subunit alpha complement(3221379..3222278) Hyphomicrobium denitrificans ATCC 51888 9389065 YP_003757268.1 CDS Hden_3152 NC_014313.1 3222297 3223460 R TIGRFAM: succinyl-CoA synthetase subunit beta; KEGG: rhi:NGR_c26240 malate-CoA ligase subunit beta; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta complement(3222297..3223460) Hyphomicrobium denitrificans ATCC 51888 9389066 YP_003757269.1 CDS Hden_3153 NC_014313.1 3223506 3224468 R KEGG: mlo:mlr1323 subunit beta of citrate lyase; PFAM: HpcH/HpaI aldolase; Citryl-CoA lyase complement(3223506..3224468) Hyphomicrobium denitrificans ATCC 51888 9389067 YP_003757270.1 CDS Hden_3154 NC_014313.1 3224609 3225817 R PFAM: aminotransferase class V; KEGG: mlo:mlr1322 serine-glyoxylate aminotransferase; class V aminotransferase complement(3224609..3225817) Hyphomicrobium denitrificans ATCC 51888 9389068 YP_003757271.1 CDS Hden_3155 NC_014313.1 3226069 3226692 R KEGG: mlo:mlr1320 nitrate/nitrite regulatory protein; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator complement(3226069..3226692) Hyphomicrobium denitrificans ATCC 51888 9389069 YP_003757272.1 CDS Hden_3156 NC_014313.1 3227088 3227615 D KEGG: bja:bll4177 hypothetical protein; hypothetical protein 3227088..3227615 Hyphomicrobium denitrificans ATCC 51888 9389070 YP_003757273.1 CDS Hden_3157 NC_014313.1 3228075 3229058 D PFAM: nuclease (SNase domain protein); KEGG: pla:Plav_1691 nuclease; nuclease 3228075..3229058 Hyphomicrobium denitrificans ATCC 51888 9389072 YP_003757274.1 CDS Hden_3158 NC_014313.1 3229085 3230086 R PFAM: transcription factor CarD; KEGG: pla:Plav_1694 CarD family transcriptional regulator; CarD family transcriptional regulator complement(3229085..3230086) Hyphomicrobium denitrificans ATCC 51888 9389073 YP_003757275.1 CDS Hden_3159 NC_014313.1 3230542 3230880 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: nha:Nham_0506 4Fe-4S ferredoxin iron-sulfur binding; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(3230542..3230880) Hyphomicrobium denitrificans ATCC 51888 9389074 YP_003757276.1 CDS Hden_3160 NC_014313.1 3231017 3231421 R KEGG: azl:AZL_026650 ribosome-associated heat shock protein; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein complement(3231017..3231421) Hyphomicrobium denitrificans ATCC 51888 9389075 YP_003757277.1 CDS Hden_3161 NC_014313.1 3231421 3234600 R KEGG: xau:Xaut_2639 helicase domain-containing protein; PFAM: helicase; SMART: helicase; helicase complement(3231421..3234600) Hyphomicrobium denitrificans ATCC 51888 9389076 YP_003757278.1 CDS Hden_3162 NC_014313.1 3234728 3235597 R KEGG: bja:bll0161 hypothetical protein; hypothetical protein complement(3234728..3235597) Hyphomicrobium denitrificans ATCC 51888 9389077 YP_003757279.1 CDS Hden_3163 NC_014313.1 3235891 3236184 D KEGG: sit:TM1040_0671 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; 50S ribosomal protein L28 3235891..3236184 Hyphomicrobium denitrificans ATCC 51888 9389078 YP_003757280.1 CDS Hden_3164 NC_014313.1 3236226 3237320 R KEGG: rpd:RPD_0285 hypothetical protein; hypothetical protein complement(3236226..3237320) Hyphomicrobium denitrificans ATCC 51888 9389079 YP_003757281.1 CDS Hden_3165 NC_014313.1 3237324 3239219 R SMART: von Willebrand factor A; TIGRFAM: cobalt chelatase subunit CobT; KEGG: met:M446_6497 cobalt chelatase subunit CobT; PFAM: Cobalt chelatase CobT subunit; cobalt chelatase subunit CobT complement(3237324..3239219) Hyphomicrobium denitrificans ATCC 51888 9389080 YP_003757282.1 CDS Hden_3166 NC_014313.1 3239322 3240323 R SMART: ATPase AAA; TIGRFAM: cobalt chelatase subunit CobS; KEGG: msl:Msil_0318 cobalt chelatase subunit CobS; PFAM: ATPase AAA; cobalt chelatase subunit CobS complement(3239322..3240323) Hyphomicrobium denitrificans ATCC 51888 9389081 YP_003757283.1 CDS Hden_3167 NC_014313.1 3240422 3241045 R KEGG: bmr:BMI_I2045 DnaJ domain protein; PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(3240422..3241045) Hyphomicrobium denitrificans ATCC 51888 9389082 YP_003757284.1 CDS Hden_3168 NC_014313.1 3241197 3241499 D PFAM: BolA family protein; KEGG: rpb:RPB_0538 BolA-like protein; BolA family protein 3241197..3241499 Hyphomicrobium denitrificans ATCC 51888 9389083 YP_003757285.1 CDS Hden_3169 NC_014313.1 3241514 3242839 R KEGG: pla:Plav_1716 hypothetical protein; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; hypothetical protein complement(3241514..3242839) Hyphomicrobium denitrificans ATCC 51888 9389084 YP_003757286.1 CDS Hden_3170 NC_014313.1 3242921 3244615 R KEGG: msl:Msil_2318 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; shikimate kinase; 3-dehydroquinate synthase complement(3242921..3244615) Hyphomicrobium denitrificans ATCC 51888 9389085 YP_003757287.1 CDS Hden_3171 NC_014313.1 3244855 3244998 D KEGG: mdi:METDI3239 hypothetical protein; hypothetical protein 3244855..3244998 Hyphomicrobium denitrificans ATCC 51888 9389086 YP_003757288.1 CDS Hden_3172 NC_014313.1 3245005 3246948 D KEGG: pla:Plav_1719 hypothetical protein; hypothetical protein 3245005..3246948 Hyphomicrobium denitrificans ATCC 51888 9389087 YP_003757289.1 CDS Hden_3173 NC_014313.1 3246957 3247886 D KEGG: pla:Plav_1720 tyrosine recombinase XerD; TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; tyrosine recombinase XerD 3246957..3247886 Hyphomicrobium denitrificans ATCC 51888 9389088 YP_003757290.1 CDS Hden_3174 NC_014313.1 3247952 3248611 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mmb:Mmol_0860 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 3247952..3248611 Hyphomicrobium denitrificans ATCC 51888 9389089 YP_003757291.1 CDS Hden_3175 NC_014313.1 3248635 3250143 D KEGG: hoh:Hoch_6851 amino acid/peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; amino acid/peptide transporter 3248635..3250143 Hyphomicrobium denitrificans ATCC 51888 9389090 YP_003757292.1 CDS Hden_3176 NC_014313.1 3250218 3251258 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, subunit alpha; KEGG: xau:Xaut_0509 acetyl-CoA carboxylase carboxyltransferase subunit alpha; PFAM: acetyl-CoA carboxylase, subunit alpha, conserved region; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 3250218..3251258 Hyphomicrobium denitrificans ATCC 51888 9389091 YP_003757293.1 CDS Hden_3177 NC_014313.1 3251433 3252398 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_3314 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3251433..3252398 Hyphomicrobium denitrificans ATCC 51888 9389092 YP_003757294.1 CDS Hden_3178 NC_014313.1 3252416 3253303 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_5308 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3252416..3253303 Hyphomicrobium denitrificans ATCC 51888 9389093 YP_003757295.1 CDS Hden_3179 NC_014313.1 3253473 3253811 D KEGG: mno:Mnod_4372 hypothetical protein; hypothetical protein 3253473..3253811 Hyphomicrobium denitrificans ATCC 51888 9389094 YP_003757296.1 CDS Hden_3180 NC_014313.1 3253994 3254950 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_0510 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3253994..3254950 Hyphomicrobium denitrificans ATCC 51888 9389095 YP_003757297.1 CDS Hden_3181 NC_014313.1 3255058 3255651 D PFAM: conserved hypothetical protein; KEGG: mch:Mchl_3606 hypothetical protein; hypothetical protein 3255058..3255651 Hyphomicrobium denitrificans ATCC 51888 9389096 YP_003757298.1 CDS Hden_3182 NC_014313.1 3255711 3258662 R KEGG: mes:Meso_3014 preprotein translocase subunit SecA; TIGRFAM: preprotein translocase, Secsubunit alpha; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SEC-C motif domain protein; SecA preprotein cross-linking region; preprotein translocase subunit SecA complement(3255711..3258662) Hyphomicrobium denitrificans ATCC 51888 9389097 YP_003757299.1 CDS Hden_3183 NC_014313.1 3259059 3259994 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: azc:AZC_0311 PpiC-type peptidyl-prolyl cis-trans isomerase precursor; PpiC-type peptidyl-prolyl cis-trans isomerase 3259059..3259994 Hyphomicrobium denitrificans ATCC 51888 9389098 YP_003757300.1 CDS Hden_3184 NC_014313.1 3260097 3261344 D TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; KEGG: mlo:mll3461 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 3260097..3261344 Hyphomicrobium denitrificans ATCC 51888 9389099 YP_003757301.1 CDS Hden_3185 NC_014313.1 3261357 3262013 D KEGG: psa:PST_2541 thiopurine S-methyltransferase; PFAM: thiopurine S-methyltransferase; thiopurine S-methyltransferase 3261357..3262013 Hyphomicrobium denitrificans ATCC 51888 9389100 YP_003757302.1 CDS Hden_3186 NC_014313.1 3262010 3262417 D KEGG: pla:Plav_1733 mutator MutT protein; TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; mutator MutT protein 3262010..3262417 Hyphomicrobium denitrificans ATCC 51888 9389101 YP_003757303.1 CDS Hden_3187 NC_014313.1 3262386 3263297 R PFAM: methyltransferase type 11; KEGG: pla:Plav_1735 methyltransferase type 11; type 11 methyltransferase complement(3262386..3263297) Hyphomicrobium denitrificans ATCC 51888 9389102 YP_003757304.1 CDS Hden_3188 NC_014313.1 3263354 3264172 D KEGG: rpc:RPC_0520 phosphoribosyltransferase; manually curated; PFAM: phosphoribosyltransferase; phosphoribosyltransferase 3263354..3264172 Hyphomicrobium denitrificans ATCC 51888 9389103 YP_003757305.1 CDS Hden_3189 NC_014313.1 3264288 3264560 D KEGG: pfl:PFL_0373 glutaredoxin; TIGRFAM: glutaredoxin; PFAM: glutaredoxin; glutaredoxin 3264288..3264560 Hyphomicrobium denitrificans ATCC 51888 9389104 YP_003757306.1 CDS Hden_3190 NC_014313.1 3264563 3265447 D PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pla:Plav_1738 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3264563..3265447 Hyphomicrobium denitrificans ATCC 51888 9389105 YP_003757307.1 CDS Hden_3191 NC_014313.1 3265448 3265897 D PFAM: protein of unknown function DUF1178; KEGG: mpo:Mpop_3477 protein of unknown function DUF1178; hypothetical protein 3265448..3265897 Hyphomicrobium denitrificans ATCC 51888 9389106 YP_003757308.1 CDS Hden_3192 NC_014313.1 3265933 3266187 R hypothetical protein complement(3265933..3266187) Hyphomicrobium denitrificans ATCC 51888 9389107 YP_003757309.1 CDS Hden_3193 NC_014313.1 3266538 3267608 D SMART: biotin and thiamin synthesis associated; Elongator protein 3/MiaB/NifB; TIGRFAM: biotin synthase; KEGG: mlo:mll5831 biotin synthetase; PFAM: biotin and thiamin synthesis associated; radical SAM domain protein; biotin synthase 3266538..3267608 Hyphomicrobium denitrificans ATCC 51888 9389108 YP_003757310.1 CDS Hden_3194 NC_014313.1 3267592 3268725 D KEGG: rpb:RPB_4344 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II; 8-amino-7-oxononanoate synthase 3267592..3268725 Hyphomicrobium denitrificans ATCC 51888 9389109 YP_003757311.1 CDS Hden_3195 NC_014313.1 3268722 3269369 D KEGG: nha:Nham_2815 dithiobiotin synthetase; TIGRFAM: dethiobiotin synthase; dethiobiotin synthase 3268722..3269369 Hyphomicrobium denitrificans ATCC 51888 9389110 YP_003757312.1 CDS Hden_3196 NC_014313.1 3269366 3270625 D KEGG: nha:Nham_2814 adenosylmethionine--8-amino-7-oxononanoate transaminase; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3269366..3270625 Hyphomicrobium denitrificans ATCC 51888 9389111 YP_003757313.1 CDS Hden_3197 NC_014313.1 3270622 3271602 D KEGG: rhi:NGR_c25100 3-oxoacyl-[acyl-carrier-protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; beta-ketoacyl-acyl-carrier-protein synthase III 3270622..3271602 Hyphomicrobium denitrificans ATCC 51888 9389112 YP_003757314.1 CDS Hden_3198 NC_014313.1 3271603 3272178 R KEGG: pag:PLES_04211 hypothetical protein; PFAM: YceI family protein; SMART: YceI family protein; YceI family protein complement(3271603..3272178) Hyphomicrobium denitrificans ATCC 51888 9389113 YP_003757315.1 CDS Hden_3199 NC_014313.1 3272178 3272756 R PFAM: cytochrome B561; KEGG: hch:HCH_01820 cytochrome b561; cytochrome B561 complement(3272178..3272756) Hyphomicrobium denitrificans ATCC 51888 9389114 YP_003757316.1 CDS Hden_3200 NC_014313.1 3272970 3273221 D KEGG: smt:Smal_1230 SMC domain protein; hypothetical protein 3272970..3273221 Hyphomicrobium denitrificans ATCC 51888 9389115 YP_003757317.1 CDS Hden_3201 NC_014313.1 3273214 3273771 D KEGG: bja:blr7297 hypothetical protein; hypothetical protein 3273214..3273771 Hyphomicrobium denitrificans ATCC 51888 9389116 YP_003757318.1 CDS Hden_3202 NC_014313.1 3273838 3274011 D PFAM: hemic uptake protein hemP; KEGG: hha:Hhal_0386 hypothetical protein; hemic uptake protein hemP 3273838..3274011 Hyphomicrobium denitrificans ATCC 51888 9389117 YP_003757319.1 CDS Hden_3203 NC_014313.1 3274186 3275556 R KEGG: rlt:Rleg2_0703 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase complement(3274186..3275556) Hyphomicrobium denitrificans ATCC 51888 9389118 YP_003757320.1 CDS Hden_3204 NC_014313.1 3275559 3276236 R KEGG: mlo:mlr4457 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator complement(3275559..3276236) Hyphomicrobium denitrificans ATCC 51888 9389119 YP_003757321.1 CDS Hden_3205 NC_014313.1 3276367 3277629 R KEGG: rru:Rru_A2971 Bcr/CflA subfamily drug resistance transporter; TIGRFAM: drug resistance transporter Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter complement(3276367..3277629) Hyphomicrobium denitrificans ATCC 51888 9389120 YP_003757322.1 CDS Hden_3206 NC_014313.1 3278000 3279964 D KEGG: oca:OCAR_7084 hypothetical protein; hypothetical protein 3278000..3279964 Hyphomicrobium denitrificans ATCC 51888 9389121 YP_003757323.1 CDS Hden_3207 NC_014313.1 3280013 3280837 D KEGG: ade:Adeh_0278 ribonuclease HII; PFAM: ribonuclease HII/HIII; ribonuclease H 3280013..3280837 Hyphomicrobium denitrificans ATCC 51888 9389122 YP_003757324.1 CDS Hden_3208 NC_014313.1 3281018 3281620 D KEGG: rle:RL3895 transmembrane protein; transmembrane protein 3281018..3281620 Hyphomicrobium denitrificans ATCC 51888 9389123 YP_003757325.1 CDS Hden_3209 NC_014313.1 3282059 3282349 D PFAM: protein of unknown function YGGT; KEGG: bid:Bind_2879 protein of unknown function YGGT; hypothetical protein 3282059..3282349 Hyphomicrobium denitrificans ATCC 51888 9389125 YP_003757326.1 CDS Hden_3210 NC_014313.1 3282346 3282696 D PFAM: protein of unknown function DUF167; KEGG: mlo:msl4154 hypothetical protein; hypothetical protein 3282346..3282696 Hyphomicrobium denitrificans ATCC 51888 9389126 YP_003757327.1 CDS Hden_3211 NC_014313.1 3282716 3283603 D KEGG: bja:bll0549 bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; methylenetetrahydrofolate dehydrogenase (NADP(+)) 3282716..3283603 Hyphomicrobium denitrificans ATCC 51888 9389127 YP_003757328.1 CDS Hden_3212 NC_014313.1 3283801 3285330 R TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; KEGG: rec:RHECIAT_CH0000361 probable Mg-chelatase protein; SMART: ATPase AAA; Mg chelatase subunit ChlI complement(3283801..3285330) Hyphomicrobium denitrificans ATCC 51888 9389128 YP_003757329.1 CDS Hden_3213 NC_014313.1 3285448 3286440 D KEGG: mpo:Mpop_0131 ISSpo8, transposase; ISSpo8, transposase 3285448..3286440 Hyphomicrobium denitrificans ATCC 51888 9389129 YP_003757330.1 CDS Hden_3214 NC_014313.1 3286483 3286983 R KEGG: mgr:MGG_09796 hypothetical protein; hypothetical protein complement(3286483..3286983) Hyphomicrobium denitrificans ATCC 51888 9389130 YP_003757331.1 CDS Hden_3216 NC_014313.1 3288131 3289174 R KEGG: acp:A2cp1_3760 hypothetical protein; hypothetical protein complement(3288131..3289174) Hyphomicrobium denitrificans ATCC 51888 9389132 YP_003757332.1 CDS Hden_3217 NC_014313.1 3289307 3289672 R KEGG: pth:PTH_0648 permease; permease complement(3289307..3289672) Hyphomicrobium denitrificans ATCC 51888 9389133 YP_003757333.1 CDS Hden_3218 NC_014313.1 3289696 3290211 R KEGG: rpb:RPB_1018 hypothetical protein; hypothetical protein complement(3289696..3290211) Hyphomicrobium denitrificans ATCC 51888 9389134 YP_003757334.1 CDS Hden_3219 NC_014313.1 3290264 3291214 R TIGRFAM: glutathione synthetase; KEGG: rpc:RPC_0319 glutathione synthetase; PFAM: glutathione synthetase ATP-binding; glutathione synthetase domain protein; glutathione synthetase complement(3290264..3291214) Hyphomicrobium denitrificans ATCC 51888 9389135 YP_003757335.1 CDS Hden_3220 NC_014313.1 3291389 3293623 R TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase; helicase; KEGG: pla:Plav_1460 primosome assembly protein PriA; SMART: DEAD-like helicase ; helicase domain protein; primosomal protein N' complement(3291389..3293623) Hyphomicrobium denitrificans ATCC 51888 9389136 YP_003757336.1 CDS Hden_3221 NC_014313.1 3293727 3294383 D KEGG: mes:Meso_3212 translaldolase; TIGRFAM: transaldolase; PFAM: transaldolase; transaldolase 3293727..3294383 Hyphomicrobium denitrificans ATCC 51888 9389137 YP_003757337.1 CDS Hden_3222 NC_014313.1 3294418 3295833 D PFAM: FAD linked oxidase; KEGG: bja:bll2569 FAD dependent oxidoreductase; FAD linked oxidase 3294418..3295833 Hyphomicrobium denitrificans ATCC 51888 9389138 YP_003757338.1 CDS Hden_3223 NC_014313.1 3295887 3296870 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: pla:Plav_1457 integrase family protein; integrase family protein 3295887..3296870 Hyphomicrobium denitrificans ATCC 51888 9389139 YP_003757339.1 CDS Hden_3224 NC_014313.1 3296898 3297914 D PFAM: GumN family protein; KEGG: mes:Meso_3402 GumN; GumN family protein 3296898..3297914 Hyphomicrobium denitrificans ATCC 51888 9389140 YP_003757340.1 CDS Hden_3225 NC_014313.1 3297954 3299366 R KEGG: nha:Nham_0537 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; dihydrolipoamide dehydrogenase complement(3297954..3299366) Hyphomicrobium denitrificans ATCC 51888 9389141 YP_003757341.1 CDS Hden_3226 NC_014313.1 3299370 3300704 R KEGG: azc:AZC_4011 dihydrolipoamide succinyltransferase; TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(3299370..3300704) Hyphomicrobium denitrificans ATCC 51888 9389142 YP_003757342.1 CDS Hden_3227 NC_014313.1 3300966 3303926 R TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: transketolase; dehydrogenase E1 component; KEGG: met:M446_2164 2-oxoglutarate dehydrogenase E1 component; SMART: transketolase central region; 2-oxoglutarate dehydrogenase, E1 subunit complement(3300966..3303926) Hyphomicrobium denitrificans ATCC 51888 9389143 YP_003757343.1 CDS Hden_3228 NC_014313.1 3304034 3304933 R TIGRFAM: succinyl-CoA synthetase, subunit alpha; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding protein; KEGG: pzu:PHZ_c0159 succinyl-CoA synthetase alpha-subunit; SMART: CoA-binding domain protein; succinyl-CoA synthetase subunit alpha complement(3304034..3304933) Hyphomicrobium denitrificans ATCC 51888 9389144 YP_003757344.1 CDS Hden_3229 NC_014313.1 3305045 3306244 R TIGRFAM: succinyl-CoA synthetase subunit beta; KEGG: oca:OCAR_6554 succinyl-CoA synthetase beta chain (SCS-alpha); PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta complement(3305045..3306244) Hyphomicrobium denitrificans ATCC 51888 9389145 YP_003757345.1 CDS Hden_3230 NC_014313.1 3306448 3307092 D KEGG: mmr:Mmar10_1758 hypothetical protein; hypothetical protein 3306448..3307092 Hyphomicrobium denitrificans ATCC 51888 9389146 YP_003757346.1 CDS Hden_3231 NC_014313.1 3307158 3308129 R KEGG: mdi:METDI2311 malate dehydrogenase; TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: lactate/malate dehydrogenase; malate dehydrogenase complement(3307158..3308129) Hyphomicrobium denitrificans ATCC 51888 9389147 YP_003757347.1 CDS Hden_3232 NC_014313.1 3308315 3309475 R PFAM: AFG1-family ATPase; KEGG: mpo:Mpop_0870 AFG1-family ATPase; AFG1-family ATPase complement(3308315..3309475) Hyphomicrobium denitrificans ATCC 51888 9389148 YP_003757348.1 CDS Hden_3233 NC_014313.1 3309714 3310310 D PFAM: GCN5-related N-acetyltransferase; KEGG: azc:AZC_0325 hypothetical protein; GCN5-like N-acetyltransferase 3309714..3310310 Hyphomicrobium denitrificans ATCC 51888 9389149 YP_003757349.1 CDS Hden_3234 NC_014313.1 3310575 3310691 D KEGG: gau:GAU_0658 hypothetical protein; hypothetical protein 3310575..3310691 Hyphomicrobium denitrificans ATCC 51888 9389150 YP_003757350.1 CDS Hden_3236 NC_014313.1 3311306 3312085 R KEGG: atc:AGR_C_4790 succinate dehydrogenase iron-sulfur protein subunit; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(3311306..3312085) Hyphomicrobium denitrificans ATCC 51888 9389152 YP_003757351.1 CDS Hden_3237 NC_014313.1 3312224 3312823 R KEGG: ret:RHE_PE00350 L-asparaginase II protein; hypothetical protein complement(3312224..3312823) Hyphomicrobium denitrificans ATCC 51888 9389153 YP_003757352.1 CDS Hden_3238 NC_014313.1 3312909 3314756 R KEGG: msl:Msil_3563 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit complement(3312909..3314756) Hyphomicrobium denitrificans ATCC 51888 9389154 YP_003757353.1 CDS Hden_3239 NC_014313.1 3314761 3315141 R KEGG: bmr:BMI_I1925 succinate dehydrogenase, hydrophobic membrane anchor protein, TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, hydrophobic membrane anchor protein complement(3314761..3315141) Hyphomicrobium denitrificans ATCC 51888 9389155 YP_003757354.1 CDS Hden_3240 NC_014313.1 3315144 3315557 R KEGG: mlo:mll4266 succinate dehydrogenase membrane anchor subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; succinate dehydrogenase, cytochrome b556 subunit complement(3315144..3315557) Hyphomicrobium denitrificans ATCC 51888 9389156 YP_003757355.1 CDS Hden_3241 NC_014313.1 3315744 3316802 R PFAM: MaoC domain protein dehydratase; KEGG: azc:AZC_3739 MaoC family protein; MaoC domain-containing protein dehydratase complement(3315744..3316802) Hyphomicrobium denitrificans ATCC 51888 9389157 YP_003757356.1 CDS Hden_3242 NC_014313.1 3316928 3317869 R KEGG: bid:Bind_1188 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; Citryl-CoA lyase complement(3316928..3317869) Hyphomicrobium denitrificans ATCC 51888 9389158 YP_003757357.1 CDS Hden_3243 NC_014313.1 3318031 3318831 D TIGRFAM: pyridoxal kinase; KEGG: mes:Meso_3224 pyridoxamine kinase; PFAM: phosphomethylpyrimidine kinase type-1; pyridoxal kinase 3318031..3318831 Hyphomicrobium denitrificans ATCC 51888 9389159 YP_003757358.1 CDS Hden_3244 NC_014313.1 3318854 3319225 D KEGG: vap:Vapar_1961 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase; arsenate reductase 3318854..3319225 Hyphomicrobium denitrificans ATCC 51888 9389160 YP_003757359.1 CDS Hden_3245 NC_014313.1 3319349 3320542 D KEGG: rru:Rru_A0128 Na+/H+ antiporter NhaA; TIGRFAM: Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 3319349..3320542 Hyphomicrobium denitrificans ATCC 51888 9389161 YP_003757360.1 CDS Hden_3246 NC_014313.1 3320562 3321200 D KEGG: bmr:BMI_I1845 carbonic anhydrase, PFAM: carbonic anhydrase; carbonate dehydratase 3320562..3321200 Hyphomicrobium denitrificans ATCC 51888 9389162 YP_003757361.1 CDS Hden_3247 NC_014313.1 3321233 3321823 R KEGG: bmr:BMI_I101 thiol:disulfide interchange protein, thioredoxin family; TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: redoxin; periplasmic protein thiol/disulfide oxidoreductase DsbE complement(3321233..3321823) Hyphomicrobium denitrificans ATCC 51888 9389163 YP_003757362.1 CDS Hden_3248 NC_014313.1 3321828 3321998 R KEGG: rpe:RPE_0314 heme exporter protein D (CcmD); TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); heme exporter protein CcmD complement(3321828..3321998) Hyphomicrobium denitrificans ATCC 51888 9389164 YP_003757363.1 CDS Hden_3249 NC_014313.1 3322000 3322755 R KEGG: rhi:NGR_c32350 heme exporter protein CcmC; TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome C assembly protein; heme exporter protein CcmC complement(3322000..3322755) Hyphomicrobium denitrificans ATCC 51888 9389165 YP_003757364.1 CDS Hden_3250 NC_014313.1 3322804 3322941 R hypothetical protein complement(3322804..3322941) Hyphomicrobium denitrificans ATCC 51888 9389166 YP_003757365.1 CDS Hden_3251 NC_014313.1 3323052 3323717 R KEGG: pla:Plav_1405 heme exporter protein CcmB; TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome C biogenesis protein CcmB; heme exporter protein CcmB complement(3323052..3323717) Hyphomicrobium denitrificans ATCC 51888 9389167 YP_003757366.1 CDS Hden_3252 NC_014313.1 3323714 3324337 R TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; KEGG: pla:Plav_1404 heme exporter protein CcmA; SMART: ATPase AAA; heme exporter protein CcmA complement(3323714..3324337) Hyphomicrobium denitrificans ATCC 51888 9389168 YP_003757367.1 CDS Hden_3253 NC_014313.1 3324572 3327286 D KEGG: sme:SMc03846 aconitate hydratase; TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; aconitate hydratase 1 3324572..3327286 Hyphomicrobium denitrificans ATCC 51888 9389169 YP_003757368.1 CDS Hden_3254 NC_014313.1 3327550 3328323 D PFAM: protein of unknown function DUF1223; KEGG: bbt:BBta_0383 hypothetical protein; hypothetical protein 3327550..3328323 Hyphomicrobium denitrificans ATCC 51888 9389170 YP_003757369.1 CDS Hden_3255 NC_014313.1 3328466 3330547 R KEGG: rce:RC1_2186 peptidyl-dipeptidase dcp; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; peptidyl-dipeptidase Dcp complement(3328466..3330547) Hyphomicrobium denitrificans ATCC 51888 9389171 YP_003757370.1 CDS Hden_3256 NC_014313.1 3330998 3331384 D KEGG: oan:Oant_0102 hypothetical protein; hypothetical protein 3330998..3331384 Hyphomicrobium denitrificans ATCC 51888 9389172 YP_003757371.1 CDS Hden_3257 NC_014313.1 3331459 3332226 R PFAM: protein of unknown function UPF0005; KEGG: bmr:BMI_I91 hypothetical protein; hypothetical protein complement(3331459..3332226) Hyphomicrobium denitrificans ATCC 51888 9389173 YP_003757372.1 CDS Hden_3258 NC_014313.1 3332333 3334915 R PFAM: protein of unknown function DUF214; KEGG: mno:Mnod_1778 protein of unknown function DUF214; hypothetical protein complement(3332333..3334915) Hyphomicrobium denitrificans ATCC 51888 9389174 YP_003757373.1 CDS Hden_3259 NC_014313.1 3334912 3335667 R KEGG: azl:AZL_000320 ABC transporter ATP-binding protein; PFAM: ABC transporter; SMART: ATPase AAA; ABC transporter complement(3334912..3335667) Hyphomicrobium denitrificans ATCC 51888 9389175 YP_003757374.1 CDS Hden_3260 NC_014313.1 3335742 3336443 D PFAM: lipolytic protein G-D-S-L family; KEGG: rpa:RPA0195 acyl-CoA thioesterase precursor; G-D-S-L family lipolytic protein 3335742..3336443 Hyphomicrobium denitrificans ATCC 51888 9389176 YP_003757375.1 CDS Hden_3261 NC_014313.1 3336487 3337059 D KEGG: atc:AGR_C_4856 hypothetical 35.7 KDA protein in MalA 3'region (ORF3); TIGRFAM: 2'-5' RNA ligase; PFAM: phosphoesterase HXTX; 2'-5' RNA ligase 3336487..3337059 Hyphomicrobium denitrificans ATCC 51888 9389177 YP_003757376.1 CDS Hden_3262 NC_014313.1 3337085 3338062 R PFAM: alcohol dehydrogenase zinc-binding domain protein; alcohol dehydrogenase GroES domain protein; KEGG: mdi:METDI1108 Zn-binding quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein complement(3337085..3338062) Hyphomicrobium denitrificans ATCC 51888 9389178 YP_003757377.1 CDS Hden_3263 NC_014313.1 3338215 3338721 D KEGG: hne:HNE_3326 RNA methyltransferase; manually curated; PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU 3338215..3338721 Hyphomicrobium denitrificans ATCC 51888 9389179 YP_003757378.1 CDS Hden_3264 NC_014313.1 3338721 3339230 D KEGG: xau:Xaut_0405 hypothetical protein; hypothetical protein 3338721..3339230 Hyphomicrobium denitrificans ATCC 51888 9389180 YP_003757379.1 CDS Hden_3265 NC_014313.1 3339274 3339912 R KEGG: bra:BRADO0206 Smr protein/MutS2 C-terminal; PFAM: Smr protein/MutS2; SMART: Smr protein/MutS2; Smr protein/MutS2 complement(3339274..3339912) Hyphomicrobium denitrificans ATCC 51888 9389181 YP_003757380.1 CDS Hden_3266 NC_014313.1 3339909 3341069 R PFAM: MltA domain protein; 3D domain protein; KEGG: rpc:RPC_0300 MltA; MltA domain-containing protein complement(3339909..3341069) Hyphomicrobium denitrificans ATCC 51888 9389182 YP_003757381.1 CDS Hden_3267 NC_014313.1 3341262 3342017 R PFAM: import inner membrane translocase subunit Tim44; KEGG: avi:Avi_0009 membrane associated transporter protein; import inner membrane translocase subunit Tim44 complement(3341262..3342017) Hyphomicrobium denitrificans ATCC 51888 9389183 YP_003757382.1 CDS Hden_3268 NC_014313.1 3342289 3342837 D PFAM: FxsA cytoplasmic membrane protein; KEGG: pla:Plav_1249 FxsA cytoplasmic membrane protein; FxsA cytoplasmic membrane protein 3342289..3342837 Hyphomicrobium denitrificans ATCC 51888 9389184 YP_003757383.1 CDS Hden_3269 NC_014313.1 3342946 3343452 D KEGG: sjp:SJA_C1-08290 preprotein translocase SecB subunit; TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; protein-export protein SecB 3342946..3343452 Hyphomicrobium denitrificans ATCC 51888 9389185 YP_003757384.1 CDS Hden_3270 NC_014313.1 3343474 3344187 R SMART: exonuclease; TIGRFAM: DNA polymerase III epsilon subunit; KEGG: rpt:Rpal_0303 DNA polymerase III subunit epsilon; PFAM: exonuclease RNase T and DNA polymerase III; DNA polymerase III subunit epsilon complement(3343474..3344187) Hyphomicrobium denitrificans ATCC 51888 9389186 YP_003757385.1 CDS Hden_3271 NC_014313.1 3344229 3344846 R KEGG: mlo:mlr4493 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; dephospho-CoA kinase complement(3344229..3344846) Hyphomicrobium denitrificans ATCC 51888 9389187 YP_003757386.1 CDS Hden_3272 NC_014313.1 3344840 3345676 R KEGG: bcs:BCAN_A2115 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: shikimate dehydrogenase substrate binding domain protein; shikimate/quinate 5-dehydrogenase; shikimate 5-dehydrogenase complement(3344840..3345676) Hyphomicrobium denitrificans ATCC 51888 9389188 YP_003757387.1 CDS Hden_3273 NC_014313.1 3345673 3346284 R KEGG: pla:Plav_1255 maf protein; TIGRFAM: maf protein; PFAM: Maf family protein; maf protein complement(3345673..3346284) Hyphomicrobium denitrificans ATCC 51888 9389189 YP_003757388.1 CDS Hden_3274 NC_014313.1 3346277 3347128 R PFAM: protein of unknown function DUF299; KEGG: mes:Meso_3478 hypothetical protein; hypothetical protein complement(3346277..3347128) Hyphomicrobium denitrificans ATCC 51888 9389190 YP_003757389.1 CDS Hden_3275 NC_014313.1 3347561 3348631 D TIGRFAM: uroporphyrinogen decarboxylase; KEGG: bra:BRADO1875 uroporphyrinogen decarboxylase; PFAM: uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 3347561..3348631 Hyphomicrobium denitrificans ATCC 51888 9389191 YP_003757390.1 CDS Hden_3276 NC_014313.1 3348648 3349157 D PFAM: conserved hypothetical protein; KEGG: mes:Meso_3475 hypothetical protein; hypothetical protein 3348648..3349157 Hyphomicrobium denitrificans ATCC 51888 9389192 YP_003757391.1 CDS Hden_3277 NC_014313.1 3349368 3350633 D TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; Rho termination factor domain protein; Rho termination factor RNA-binding; KEGG: bbt:BBta_0163 transcription termination factor Rho; SMART: Cold shock protein; ATPase AAA; transcription termination factor Rho 3349368..3350633 Hyphomicrobium denitrificans ATCC 51888 9389193 YP_003757392.1 CDS Hden_3278 NC_014313.1 3350735 3351727 R PFAM: fatty acid hydroxylase; KEGG: nfa:nfa53570 hypothetical protein; fatty acid hydroxylase complement(3350735..3351727) Hyphomicrobium denitrificans ATCC 51888 9389194 YP_003757393.1 CDS Hden_3279 NC_014313.1 3351771 3353807 R PFAM: protein of unknown function DUF255; KEGG: azl:AZL_000080 hypothetical protein; hypothetical protein complement(3351771..3353807) Hyphomicrobium denitrificans ATCC 51888 9389195 YP_003757394.1 CDS Hden_3280 NC_014313.1 3353861 3355195 D KEGG: pla:Plav_1272 tRNA modification GTPase TrmE; TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; tRNA modification GTPase TrmE 3353861..3355195 Hyphomicrobium denitrificans ATCC 51888 9389196 YP_003757395.1 CDS Hden_3281 NC_014313.1 3355386 3357257 D KEGG: pla:Plav_1274 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; glucose inhibited division protein A 3355386..3357257 Hyphomicrobium denitrificans ATCC 51888 9389197 YP_003757396.1 CDS Hden_3282 NC_014313.1 3357257 3357916 D KEGG: xau:Xaut_1835 16S rRNA methyltransferase GidB; TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB 3357257..3357916 Hyphomicrobium denitrificans ATCC 51888 9389198 YP_003757397.1 CDS Hden_3283 NC_014313.1 3357921 3358769 D PFAM: cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_1836 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 3357921..3358769 Hyphomicrobium denitrificans ATCC 51888 9389199 YP_003757398.1 CDS Hden_3284 NC_014313.1 3358830 3359708 D TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: pla:Plav_1277 ParB-like partition protein; SMART: ParB domain protein nuclease; parB-like partition protein 3358830..3359708 Hyphomicrobium denitrificans ATCC 51888 9389200 YP_003757399.1 CDS Hden_3285 NC_014313.1 3359819 3360151 D manually curated; TIGRFAM: phosphoribosyl-ATP diphosphatase; KEGG: bbt:BBta_0141 phosphoribosyl-ATP pyrophosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; phosphoribosyl-ATP diphosphatase 3359819..3360151 Hyphomicrobium denitrificans ATCC 51888 9389201 YP_003757400.1 CDS Hden_3286 NC_014313.1 3360148 3361155 D TIGRFAM: pantothenate kinase; KEGG: pla:Plav_1229 pantothenate kinase; pantothenate kinase 3360148..3361155 Hyphomicrobium denitrificans ATCC 51888 9389202 YP_003757401.1 CDS Hden_3287 NC_014313.1 3361325 3361600 R KEGG: dmo:Dmoj_GI20404 GI20404 gene product from transcript GI20404-RA; hypothetical protein complement(3361325..3361600) Hyphomicrobium denitrificans ATCC 51888 9389203 YP_003757402.1 CDS Hden_3288 NC_014313.1 3361795 3362790 R PFAM: PfkB domain protein; KEGG: azl:AZL_028340 adenosine kinase; PfkB domain-containing protein complement(3361795..3362790) Hyphomicrobium denitrificans ATCC 51888 9389204 YP_003757403.1 CDS Hden_3289 NC_014313.1 3362855 3363898 R KEGG: rpd:RPD_0434 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta complement(3362855..3363898) Hyphomicrobium denitrificans ATCC 51888 9389205 YP_003757404.1 CDS Hden_3290 NC_014313.1 3363942 3364514 R PFAM: protein of unknown function DUF2159, secreted; KEGG: xau:Xaut_1447 hypothetical protein; hypothetical protein complement(3363942..3364514) Hyphomicrobium denitrificans ATCC 51888 9389206 YP_003757405.1 CDS Hden_3291 NC_014313.1 3364501 3367125 R manually curated; TIGRFAM: leucyl-tRNA synthetase; KEGG: mes:Meso_3209 leucyl-tRNA synthetase; leucyl-tRNA synthetase complement(3364501..3367125) Hyphomicrobium denitrificans ATCC 51888 9389207 YP_003757406.1 CDS Hden_3292 NC_014313.1 3367387 3368535 D PFAM: filamentation induced by cAMP protein Fic; KEGG: eba:ebA669 hypothetical protein; filamentation induced by cAMP protein Fic 3367387..3368535 Hyphomicrobium denitrificans ATCC 51888 9389208 YP_003757407.1 CDS Hden_3293 NC_014313.1 3368594 3368998 R PFAM: protein of unknown function DUF336; KEGG: sus:acid_6903 hypothetical protein; hypothetical protein complement(3368594..3368998) Hyphomicrobium denitrificans ATCC 51888 9389209 YP_003757408.1 CDS Hden_3294 NC_014313.1 3369128 3369808 D PFAM: alanine racemase domain protein; KEGG: avi:Avi_4380 hypothetical protein; alanine racemase domain-containing protein 3369128..3369808 Hyphomicrobium denitrificans ATCC 51888 9389210 YP_003757409.1 CDS Hden_3295 NC_014313.1 3369942 3370874 D KEGG: isc:IscW_ISCW003608 discs large protein; hypothetical protein 3369942..3370874 Hyphomicrobium denitrificans ATCC 51888 9389211 YP_003757410.1 CDS Hden_3296 NC_014313.1 3370977 3371900 R PFAM: protein of unknown function DUF344; KEGG: pmy:Pmen_4078 hypothetical protein; hypothetical protein complement(3370977..3371900) Hyphomicrobium denitrificans ATCC 51888 9389212 YP_003757411.1 CDS Hden_3297 NC_014313.1 3372010 3373035 R PFAM: aldo/keto reductase; KEGG: bgl:bglu_2g10820 oxidoreductase, MocA; aldo/keto reductase complement(3372010..3373035) Hyphomicrobium denitrificans ATCC 51888 9389213 YP_003757412.1 CDS Hden_3298 NC_014313.1 3373380 3373955 D KEGG: bbt:BBta_6578 hypothetical protein; hypothetical protein 3373380..3373955 Hyphomicrobium denitrificans ATCC 51888 9389214 YP_003757413.1 CDS Hden_3299 NC_014313.1 3374013 3375029 R SMART: beta-lactamase; KEGG: smd:Smed_5230 beta-lactamase domain-containing protein; beta-lactamase complement(3374013..3375029) Hyphomicrobium denitrificans ATCC 51888 9389215 YP_003757414.1 CDS Hden_3300 NC_014313.1 3375108 3375902 D SMART: Helix-turn-helix, AraC domain; KEGG: smd:Smed_5231 helix-turn-helix domain-containing protein; AraC family transcriptional regulator 3375108..3375902 Hyphomicrobium denitrificans ATCC 51888 9389216 YP_003757415.1 CDS Hden_3301 NC_014313.1 3376153 3378891 D KEGG: mdi:METDI2870 DNA-binding membrane protein required for chromosome resolution and partitioning; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; cell division protein FtsK/SpoIIIE 3376153..3378891 Hyphomicrobium denitrificans ATCC 51888 9389217 YP_003757416.1 CDS Hden_3302 NC_014313.1 3379058 3379813 D PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: pla:Plav_1299 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA 3379058..3379813 Hyphomicrobium denitrificans ATCC 51888 9389218 YP_003757417.1 CDS Hden_3303 NC_014313.1 3380138 3380662 R KEGG: mrd:Mrad2831_5013 cyclic nucleotide-binding protein; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; Crp/Fnr family transcriptional regulator complement(3380138..3380662) Hyphomicrobium denitrificans ATCC 51888 9389219 YP_003757418.1 CDS Hden_3304 NC_014313.1 3380846 3381532 R KEGG: mlo:mlr4237 two-component response regulator; PFAM: response regulator receiver; transcriptional regulator; SMART: response regulator receiver; transcriptional regulator; winged helix family two component transcriptional regulator complement(3380846..3381532) Hyphomicrobium denitrificans ATCC 51888 9389220 YP_003757419.1 CDS Hden_3305 NC_014313.1 3381646 3382200 D KEGG: azc:AZC_0089 hypothetical protein; manually curated; PFAM: ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 3381646..3382200 Hyphomicrobium denitrificans ATCC 51888 9389221 YP_003757420.1 CDS Hden_3306 NC_014313.1 3382332 3383813 R KEGG: mpo:Mpop_2051 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter; ammonium transporter complement(3382332..3383813) Hyphomicrobium denitrificans ATCC 51888 9389222 YP_003757421.1 CDS Hden_3307 NC_014313.1 3383865 3384203 R PFAM: nitrogen regulatory protein P-II; KEGG: xau:Xaut_2209 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3383865..3384203) Hyphomicrobium denitrificans ATCC 51888 9389223 YP_003757422.1 CDS Hden_3308 NC_014313.1 3384420 3385316 R KEGG: smd:Smed_3049 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II complement(3384420..3385316) Hyphomicrobium denitrificans ATCC 51888 9389224 YP_003757423.1 CDS Hden_3309 NC_014313.1 3385431 3386675 D KEGG: rpe:RPE_0407 2-octaprenyl-6-methoxyphenyl hydroxylase; TIGRFAM: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3385431..3386675 Hyphomicrobium denitrificans ATCC 51888 9389225 YP_003757424.1 CDS Hden_3310 NC_014313.1 3386677 3387234 R KEGG: bbt:BBta_0366 16S rRNA-processing protein RimM; TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; 16S rRNA processing protein RimM complement(3386677..3387234) Hyphomicrobium denitrificans ATCC 51888 9389226 YP_003757425.1 CDS Hden_3311 NC_014313.1 3387261 3387620 R KEGG: ath:AT3G46760 protein kinase family protein; hypothetical protein complement(3387261..3387620) Hyphomicrobium denitrificans ATCC 51888 9389227 YP_003757426.1 CDS Hden_3312 NC_014313.1 3387754 3388122 R KEGG: sme:SMc03859 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; 30S ribosomal protein S16 complement(3387754..3388122) Hyphomicrobium denitrificans ATCC 51888 9389228 YP_003757427.1 CDS Hden_3313 NC_014313.1 3388164 3389744 R TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: xau:Xaut_1464 signal recognition particle protein; SMART: ATPase AAA; signal recognition particle protein complement(3388164..3389744) Hyphomicrobium denitrificans ATCC 51888 9389229 YP_003757428.1 CDS Hden_3314 NC_014313.1 3390103 3390663 R PFAM: lipid A 3-O-deacylase-related; KEGG: plt:Plut_0491 hypothetical protein; lipid A 3-O-deacylase-like protein complement(3390103..3390663) Hyphomicrobium denitrificans ATCC 51888 9389230 YP_003757429.1 CDS Hden_3315 NC_014313.1 3391174 3392043 D KEGG: rpt:Rpal_0251 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 3391174..3392043 Hyphomicrobium denitrificans ATCC 51888 9389231 YP_003757430.1 CDS Hden_3316 NC_014313.1 3392100 3393359 D TIGRFAM: MiaB-like tRNA modifying enzyme; RNA modification enzyme, MiaB family; PFAM: radical SAM protein; protein of unknown function UPF0004; KEGG: rce:RC1_2196 hypothetical protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 3392100..3393359 Hyphomicrobium denitrificans ATCC 51888 9389232 YP_003757431.1 CDS Hden_3317 NC_014313.1 3393356 3394528 D TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; KEGG: mno:Mnod_4411 signal recognition particle-docking protein FtsY; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3393356..3394528 Hyphomicrobium denitrificans ATCC 51888 9389233 YP_003757432.1 CDS Hden_3318 NC_014313.1 3394550 3395212 D PFAM: Intracellular septation protein A; KEGG: xau:Xaut_0207 intracellular septation protein A; Intracellular septation protein A 3394550..3395212 Hyphomicrobium denitrificans ATCC 51888 9389234 YP_003757433.1 CDS Hden_3319 NC_014313.1 3395222 3395824 D KEGG: rce:RC1_3945 intracellular septation protein A, TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein A 3395222..3395824 Hyphomicrobium denitrificans ATCC 51888 9389235 YP_003757434.1 CDS Hden_3320 NC_014313.1 3396068 3396541 D manually curated; PFAM: regulatory protein MarR; KEGG: MarR family transcriptional regulator; SMART: regulatory protein MarR; MarR family transcriptional regulator 3396068..3396541 Hyphomicrobium denitrificans ATCC 51888 9389236 YP_003757435.1 CDS Hden_3321 NC_014313.1 3396599 3397627 R TIGRFAM: aspartate-semialdehyde dehydrogenase; KEGG: nwi:Nwi_2793 aspartate-semialdehyde dehydrogenase; PFAM: semialdehyde dehydrogenase dimerisation region; semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase complement(3396599..3397627) Hyphomicrobium denitrificans ATCC 51888 9389237 YP_003757436.1 CDS Hden_3322 NC_014313.1 3397814 3398272 D KEGG: pla:Plav_0413 hypothetical protein; hypothetical protein 3397814..3398272 Hyphomicrobium denitrificans ATCC 51888 9389238 YP_003757437.1 CDS Hden_3323 NC_014313.1 3398427 3399542 R TIGRFAM: 3-isopropylmalate dehydrogenase; KEGG: mno:Mnod_7390 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(3398427..3399542) Hyphomicrobium denitrificans ATCC 51888 9389239 YP_003757438.1 CDS Hden_3324 NC_014313.1 3399701 3400297 R KEGG: rpe:RPE_2619 hypothetical protein; hypothetical protein complement(3399701..3400297) Hyphomicrobium denitrificans ATCC 51888 9389240 YP_003757439.1 CDS Hden_3325 NC_014313.1 3400328 3401002 R TIGRFAM: phosphoglycerate mutase 1 family; PFAM: phosphoglycerate mutase; KEGG: bja:blr0686 phosphoglyceromutase; SMART: phosphoglycerate mutase; phosphoglycerate mutase 1 family complement(3400328..3401002) Hyphomicrobium denitrificans ATCC 51888 9389241 YP_003757440.1 CDS Hden_3326 NC_014313.1 3401044 3401844 R TIGRFAM: dihydrodipicolinate reductase; KEGG: rce:RC1_3162 dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(3401044..3401844) Hyphomicrobium denitrificans ATCC 51888 9389242 YP_003757441.1 CDS Hden_3327 NC_014313.1 3401988 3402515 R KEGG: rpc:RPC_0040 inorganic pyrophosphatase; PFAM: inorganic pyrophosphatase; inorganic diphosphatase complement(3401988..3402515) Hyphomicrobium denitrificans ATCC 51888 9389243 YP_003757442.1 CDS Hden_3328 NC_014313.1 3402635 3403141 R PFAM: GCN5-related N-acetyltransferase; KEGG: msl:Msil_1026 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(3402635..3403141) Hyphomicrobium denitrificans ATCC 51888 9389244 YP_003757443.1 CDS Hden_3329 NC_014313.1 3403281 3403757 R PFAM: Phasin; KEGG: oca:OCAR_5122 phasin; Phasin complement(3403281..3403757) Hyphomicrobium denitrificans ATCC 51888 9389245 YP_003757444.1 CDS Hden_3330 NC_014313.1 3404006 3405310 R SMART: ATPase AAA; KEGG: mmr:Mmar10_3066 ATPase AAA; ATPase AAA complement(3404006..3405310) Hyphomicrobium denitrificans ATCC 51888 9389246 YP_003757445.1 CDS Hden_3331 NC_014313.1 3405444 3405701 R KEGG: nwi:Nwi_3095 hypothetical protein; hypothetical protein complement(3405444..3405701) Hyphomicrobium denitrificans ATCC 51888 9389247 YP_003757446.1 CDS Hden_3332 NC_014313.1 3405795 3407633 R TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: oan:Oant_3304 GTP-binding protein TypA; SMART: elongation factor G domain protein; GTP-binding protein TypA complement(3405795..3407633) Hyphomicrobium denitrificans ATCC 51888 9389248 YP_003757447.1 CDS Hden_3333 NC_014313.1 3407775 3408554 R KEGG: kva:Kvar_4695 MscS mechanosensitive ion channel; hypothetical protein complement(3407775..3408554) Hyphomicrobium denitrificans ATCC 51888 9389249 YP_003757448.1 CDS Hden_3334 NC_014313.1 3408721 3409455 R PFAM: peptidase M50; KEGG: mth:MTH816 sporulation protein IVFB related protein; peptidase M50 complement(3408721..3409455) Hyphomicrobium denitrificans ATCC 51888 9389250 YP_003757449.1 CDS Hden_3335 NC_014313.1 3409512 3410039 R KEGG: bra:BRADO0724 hypothetical protein; hypothetical protein complement(3409512..3410039) Hyphomicrobium denitrificans ATCC 51888 9389251 YP_003757450.1 CDS Hden_3336 NC_014313.1 3410042 3410248 R PFAM: TOBE domain protein; KEGG: ara:Arad_0570 molybdo-pterin binding protein; TOBE domain-containing protein complement(3410042..3410248) Hyphomicrobium denitrificans ATCC 51888 9389252 YP_003757451.1 CDS Hden_3337 NC_014313.1 3410281 3411141 R KEGG: pzu:PHZ_c0325 hydrolase, carbon-nitrogen family; TIGRFAM: N-carbamoylputrescine amidase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-carbamoylputrescine amidase complement(3410281..3411141) Hyphomicrobium denitrificans ATCC 51888 9389253 YP_003757452.1 CDS Hden_3338 NC_014313.1 3411141 3412169 R KEGG: cak:Caul_4697 agmatine deiminase; PFAM: Porphyromonas-type peptidyl-arginine deiminase; Agmatine deiminase complement(3411141..3412169) Hyphomicrobium denitrificans ATCC 51888 9389254 YP_003757453.1 CDS Hden_3339 NC_014313.1 3412318 3412533 R KEGG: nph:NP4976A hypothetical protein; hypothetical protein complement(3412318..3412533) Hyphomicrobium denitrificans ATCC 51888 9389255 YP_003757454.1 CDS Hden_3340 NC_014313.1 3412576 3413805 R TIGRFAM: argininosuccinate synthase; KEGG: ara:Arad_4374 argininosuccinate synthase; PFAM: argininosuccinate synthase; argininosuccinate synthase complement(3412576..3413805) Hyphomicrobium denitrificans ATCC 51888 9389256 YP_003757455.1 CDS Hden_3341 NC_014313.1 3414248 3415030 D KEGG: dac:Daci_1499 hypothetical protein; hypothetical protein 3414248..3415030 Hyphomicrobium denitrificans ATCC 51888 9389257 YP_003757456.1 CDS Hden_3342 NC_014313.1 3415070 3415633 R KEGG: mmi:MMAR_2683 PPE family protein, PPE31; hypothetical protein complement(3415070..3415633) Hyphomicrobium denitrificans ATCC 51888 9389258 YP_003757457.1 CDS Hden_3343 NC_014313.1 3415793 3416452 R KEGG: rpd:RPD_0711 hypothetical protein; hypothetical protein complement(3415793..3416452) Hyphomicrobium denitrificans ATCC 51888 9389259 YP_003757458.1 CDS Hden_3344 NC_014313.1 3416553 3417758 R TIGRFAM:radical SAM protein; PFAM: radical SAM domain protein; KEGG: mes:Meso_2859 radical SAM protein; SMART: Elongator protein 3/MiaB/NifB; Cfr family radical SAM protein complement(3416553..3417758) Hyphomicrobium denitrificans ATCC 51888 9389260 YP_003757459.1 CDS Hden_3345 NC_014313.1 3417998 3419305 R TIGRFAM: heat shock protein HslVU, ATPase HslU; PFAM: ATPase AAA; Clp ATPase-like; KEGG: bbt:BBta_0152 ATP-dependent protease ATP-binding subunit HslU; SMART: ATPase AAA; heat shock protein HslVU, ATPase HslU complement(3417998..3419305) Hyphomicrobium denitrificans ATCC 51888 9389261 YP_003757460.1 CDS Hden_3346 NC_014313.1 3419302 3420390 R KEGG: hba:Hbal_3130 hypothetical protein; hypothetical protein complement(3419302..3420390) Hyphomicrobium denitrificans ATCC 51888 9389262 YP_003757461.1 CDS Hden_3347 NC_014313.1 3420410 3420982 R PFAM: 20S proteasome A and subunit betas; KEGG: oca:OCAR_4394 ATP-dependent protease peptidase subunit; 20S proteasome subunits A and B complement(3420410..3420982) Hyphomicrobium denitrificans ATCC 51888 9389263 YP_003757462.1 CDS Hden_3348 NC_014313.1 3421256 3421855 D KEGG: oca:OCAR_4395 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 3421256..3421855 Hyphomicrobium denitrificans ATCC 51888 9389264 YP_003757463.1 CDS Hden_3349 NC_014313.1 3421910 3422398 D PFAM: protein of unknown function DUF2506; KEGG: rpb:RPB_0406 hypothetical protein; hypothetical protein 3421910..3422398 Hyphomicrobium denitrificans ATCC 51888 9389265 YP_003757464.1 CDS Hden_3350 NC_014313.1 3422411 3423064 D KEGG: mno:Mnod_7531 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 3422411..3423064 Hyphomicrobium denitrificans ATCC 51888 9389266 YP_003757465.1 CDS Hden_3351 NC_014313.1 3423232 3423588 R KEGG: msm:MSMEG_0311 glycosyltransferase; hypothetical protein complement(3423232..3423588) Hyphomicrobium denitrificans ATCC 51888 9389267 YP_003757466.1 CDS Hden_3352 NC_014313.1 3423806 3424174 R KEGG: ypb:YPTS_4102 SinR-like protein; hypothetical protein complement(3423806..3424174) Hyphomicrobium denitrificans ATCC 51888 9389268 YP_003757467.1 CDS Hden_3353 NC_014313.1 3424363 3424677 R KEGG: tcr:508387.40 hypothetical protein; hypothetical protein complement(3424363..3424677) Hyphomicrobium denitrificans ATCC 51888 9389269 YP_003757468.1 CDS Hden_3354 NC_014313.1 3424969 3425697 D TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; KEGG: rpe:RPE_0367 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: histidine biosynthesis protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 3424969..3425697 Hyphomicrobium denitrificans ATCC 51888 9389270 YP_003757469.1 CDS Hden_3355 NC_014313.1 3425694 3425918 D KEGG: hch:HCH_03334 thiol-disulfide isomerase and thioredoxins; hypothetical protein 3425694..3425918 Hyphomicrobium denitrificans ATCC 51888 9389271 YP_003757470.1 CDS Hden_3356 NC_014313.1 3425970 3427553 D KEGG: azc:AZC_0213 peptide chain release factor 3; TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; peptide chain release factor 3 3425970..3427553 Hyphomicrobium denitrificans ATCC 51888 9389272 YP_003757471.1 CDS Hden_3357 NC_014313.1 3427576 3427887 R KEGG: fps:FP1220 hypothetical protein; hypothetical protein complement(3427576..3427887) Hyphomicrobium denitrificans ATCC 51888 9389273 YP_003757472.1 CDS Hden_3358 NC_014313.1 3428061 3428837 D KEGG: rhi:NGR_c34000 imidazole glycerol phosphate synthase subunit HisF; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; imidazoleglycerol phosphate synthase, cyclase subunit 3428061..3428837 Hyphomicrobium denitrificans ATCC 51888 9389274 YP_003757473.1 CDS Hden_3359 NC_014313.1 3429009 3429770 R SMART: HhH-GPD family protein; iron-sulfur cluster loop; DNA-binding protein; TIGRFAM: endonuclease III; KEGG: rpa:RPA0343 endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; iron-sulfur cluster loop; endonuclease III complement(3429009..3429770) Hyphomicrobium denitrificans ATCC 51888 9389275 YP_003757474.1 CDS Hden_3360 NC_014313.1 3429831 3430328 D PFAM: protein of unknown function DUF2244, transmembrane; KEGG: rce:RC1_3158 hypothetical protein; hypothetical protein 3429831..3430328 Hyphomicrobium denitrificans ATCC 51888 9389276 YP_003757475.1 CDS Hden_3361 NC_014313.1 3430330 3430542 R KEGG: vei:Veis_0812 FAD dependent oxidoreductase; hypothetical protein complement(3430330..3430542) Hyphomicrobium denitrificans ATCC 51888 9389277 YP_003757476.1 CDS Hden_3362 NC_014313.1 3430547 3430942 R PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: acr:Acry_1387 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(3430547..3430942) Hyphomicrobium denitrificans ATCC 51888 9389278 YP_003757477.1 CDS Hden_3363 NC_014313.1 3431032 3431640 R KEGG: pla:Plav_1424 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase, small subunit complement(3431032..3431640) Hyphomicrobium denitrificans ATCC 51888 9389279 YP_003757478.1 CDS Hden_3364 NC_014313.1 3431671 3432102 R KEGG: ccs:CCNA_00377 chromosome partition protein smc; hypothetical protein complement(3431671..3432102) Hyphomicrobium denitrificans ATCC 51888 9389280 YP_003757479.1 CDS Hden_3365 NC_014313.1 3432179 3432724 R KEGG: nvi:100117425 similar to kuzbanian; hypothetical protein complement(3432179..3432724) Hyphomicrobium denitrificans ATCC 51888 9389281 YP_003757480.1 CDS Hden_3366 NC_014313.1 3432857 3433267 R PFAM: protein of unknown function DUF1025; KEGG: hypothetical protein; hypothetical protein complement(3432857..3433267) Hyphomicrobium denitrificans ATCC 51888 9389282 YP_003757481.1 CDS Hden_3367 NC_014313.1 3433350 3434162 R PFAM: methyltransferase type 11; KEGG: methyltransferase domain-containing protein; type 11 methyltransferase complement(3433350..3434162) Hyphomicrobium denitrificans ATCC 51888 9389283 YP_003757482.1 CDS Hden_3368 NC_014313.1 3434339 3435088 D PFAM: autoinducer synthesis protein; KEGG: nwi:Nwi_2715 hypothetical protein; autoinducer synthesis protein 3434339..3435088 Hyphomicrobium denitrificans ATCC 51888 9389284 YP_003757483.1 CDS Hden_3369 NC_014313.1 3435149 3436555 R KEGG: nha:Nham_3584 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase, large subunit complement(3435149..3436555) Hyphomicrobium denitrificans ATCC 51888 9389285 YP_003757484.1 CDS Hden_3370 NC_014313.1 3436667 3437554 R PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: azc:AZC_1149 transcriptional regulator; LysR family transcriptional regulator complement(3436667..3437554) Hyphomicrobium denitrificans ATCC 51888 9389286 YP_003757485.1 CDS Hden_3371 NC_014313.1 3437670 3438638 R KEGG: pla:Plav_2305 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(3437670..3438638) Hyphomicrobium denitrificans ATCC 51888 9389287 YP_003757486.1 CDS Hden_3372 NC_014313.1 3438788 3440092 D PFAM: general substrate transporter; KEGG: avi:Avi_2266 MFS permease; general substrate transporter 3438788..3440092 Hyphomicrobium denitrificans ATCC 51888 9389288 YP_003757487.1 CDS Hden_3373 NC_014313.1 3440089 3440853 R KEGG: rpc:RPC_0575 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; DNA repair protein RadC complement(3440089..3440853) Hyphomicrobium denitrificans ATCC 51888 9389289 YP_003757488.1 CDS Hden_3374 NC_014313.1 3440866 3441699 R KEGG: rpe:RPE_0094 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase, type I complement(3440866..3441699) Hyphomicrobium denitrificans ATCC 51888 9389290 YP_003757489.1 CDS Hden_3375 NC_014313.1 3441809 3442972 D PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_3590 OmpA/MotB; OmpA/MotB domain-containing protein 3441809..3442972 Hyphomicrobium denitrificans ATCC 51888 9389291 YP_003757490.1 CDS Hden_3376 NC_014313.1 3443127 3443822 R KEGG: smd:Smed_3101 50S ribosomal protein L19; TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; 50S ribosomal protein L19 complement(3443127..3443822) Hyphomicrobium denitrificans ATCC 51888 9389292 YP_003757491.1 CDS Hden_3377 NC_014313.1 3444034 3445707 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_0439 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(3444034..3445707) Hyphomicrobium denitrificans ATCC 51888 9389293 YP_003757492.1 CDS Hden_3378 NC_014313.1 3445915 3446646 R TIGRFAM: tRNA (guanine-N1)-methyltransferase; KEGG: trmD; tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(3445915..3446646) Hyphomicrobium denitrificans ATCC 51888 9389294 YP_003757493.1 CDS Hden_3379 NC_014313.1 3446707 3446994 R PFAM: protein of unknown function DUF1330; KEGG: mrd:Mrad2831_3703 hypothetical protein; hypothetical protein complement(3446707..3446994) Hyphomicrobium denitrificans ATCC 51888 9389295 YP_003757494.1 CDS Hden_3380 NC_014313.1 3447091 3448071 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: msl:Msil_0166 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(3447091..3448071) Hyphomicrobium denitrificans ATCC 51888 9389296 YP_003757495.1 CDS Hden_3381 NC_014313.1 3448232 3448927 R TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: rpc:RPC_0333 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(3448232..3448927) Hyphomicrobium denitrificans ATCC 51888 9389297 YP_003757496.1 CDS Hden_3382 NC_014313.1 3448933 3449532 R PFAM: NADPH-dependent FMN reductase; KEGG: pat:Patl_2576 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(3448933..3449532) Hyphomicrobium denitrificans ATCC 51888 9389298 YP_003757497.1 CDS Hden_3383 NC_014313.1 3449644 3450804 R TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; KEGG: pla:Plav_3573 chaperone protein DnaJ; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ complement(3449644..3450804) Hyphomicrobium denitrificans ATCC 51888 9389299 YP_003757498.1 CDS Hden_3384 NC_014313.1 3450957 3452882 R KEGG: azc:AZC_0690 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: heat shock protein 70; chaperone protein DnaK complement(3450957..3452882) Hyphomicrobium denitrificans ATCC 51888 9389300 YP_003757499.1 CDS Hden_3385 NC_014313.1 3453226 3453843 R PFAM: GrpE protein; KEGG: smd:Smed_0012 ribulose-phosphate 3-epimerase; GrpE protein complement(3453226..3453843) Hyphomicrobium denitrificans ATCC 51888 9389301 YP_003757500.1 CDS Hden_3386 NC_014313.1 3453970 3455085 R KEGG: nwi:Nwi_0194 heat-inducible transcription repressor; TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA complement(3453970..3455085) Hyphomicrobium denitrificans ATCC 51888 9389302 YP_003757501.1 CDS Hden_3387 NC_014313.1 3455188 3455901 D TIGRFAM: ribonuclease PH; KEGG: xau:Xaut_2535 ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 3455188..3455901 Hyphomicrobium denitrificans ATCC 51888 9389303 YP_003757502.1 CDS Hden_3388 NC_014313.1 3455926 3456351 D PFAM: protein of unknown function DUF1772; KEGG: xau:Xaut_3066 hypothetical protein; hypothetical protein 3455926..3456351 Hyphomicrobium denitrificans ATCC 51888 9389304 YP_003757503.1 CDS Hden_3389 NC_014313.1 3456336 3456770 D PFAM: glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc01145 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3456336..3456770 Hyphomicrobium denitrificans ATCC 51888 9389305 YP_003757504.1 CDS Hden_3390 NC_014313.1 3456770 3457660 D PFAM: Ham1 family protein; KEGG: azc:AZC_4290 deoxyribonucleotide triphosphate pyrophosphatase; Ham1 family protein 3456770..3457660 Hyphomicrobium denitrificans ATCC 51888 9389306 YP_003757505.1 CDS Hden_3391 NC_014313.1 3457657 3459081 D TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: radical SAM protein; HemN domain protein; KEGG: mrd:Mrad2831_2941 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 3457657..3459081 Hyphomicrobium denitrificans ATCC 51888 9389307 YP_003757506.1 CDS Hden_3392 NC_014313.1 3459114 3459695 D PFAM: SNARE associated Golgi protein; KEGG: azl:AZL_002820 hypothetical protein; hypothetical protein 3459114..3459695 Hyphomicrobium denitrificans ATCC 51888 9389308 YP_003757507.1 CDS Hden_3393 NC_014313.1 3459799 3460320 D KEGG: atc:AGR_L_2587 hypothetical protein; hypothetical protein 3459799..3460320 Hyphomicrobium denitrificans ATCC 51888 9389309 YP_003757508.1 CDS Hden_3394 NC_014313.1 3461176 3461394 D KEGG: gga:769807 similar to RanBP2 (Ran-binding protein 2); hypothetical protein 3461176..3461394 Hyphomicrobium denitrificans ATCC 51888 9389310 YP_003757509.1 CDS Hden_3395 NC_014313.1 3461405 3461974 R KEGG: pla:Plav_1633 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease complement(3461405..3461974) Hyphomicrobium denitrificans ATCC 51888 9389311 YP_003757510.1 CDS Hden_3396 NC_014313.1 3462459 3463322 D PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: rhi:NGR_c26840 glutamyl-tRNA synthetase, class Ic; glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain-containing protein 3462459..3463322 Hyphomicrobium denitrificans ATCC 51888 9389312 YP_003757511.1 CDS Hden_3397 NC_014313.1 3463615 3464016 D KEGG: ade:Adeh_0506 PAS/PAC sensor signal transduction histidine kinase; hypothetical protein 3463615..3464016 Hyphomicrobium denitrificans ATCC 51888 9389313 YP_003757512.1 CDS Hden_3398 NC_014313.1 3464119 3465060 D PFAM: uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mpo:Mpop_0473 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 3464119..3465060 Hyphomicrobium denitrificans ATCC 51888 9389314 YP_003757513.1 CDS Hden_3399 NC_014313.1 3465057 3465446 D PFAM: protein of unknown function UPF0102; KEGG: mes:Meso_4010 hypothetical protein; hypothetical protein 3465057..3465446 Hyphomicrobium denitrificans ATCC 51888 9389315 YP_003757514.1 CDS Hden_3400 NC_014313.1 3465891 3466463 D KEGG: bja:bll0443 F0F1 ATP synthase subunit delta; TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; ATP synthase F1 subunit delta 3465891..3466463 Hyphomicrobium denitrificans ATCC 51888 9389316 YP_003757515.1 CDS Hden_3401 NC_014313.1 3466591 3468120 D KEGG: rlt:Rleg2_3654 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1 subunit alpha; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; ATP synthase F1 subunit alpha 3466591..3468120 Hyphomicrobium denitrificans ATCC 51888 9389317 YP_003757516.1 CDS Hden_3402 NC_014313.1 3468147 3469037 D KEGG: rec:RHECIAT_CH0004152 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1 subunit gamma; PFAM: H+transporting two-sector ATPase subunit gamma; ATP synthase F1 subunit gamma 3468147..3469037 Hyphomicrobium denitrificans ATCC 51888 9389318 YP_003757517.1 CDS Hden_3403 NC_014313.1 3469054 3469458 D KEGG: nwi:Nwi_0432 OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily; PFAM: OsmC family protein; peroxiredoxin, Ohr subfamily 3469054..3469458 Hyphomicrobium denitrificans ATCC 51888 9389319 YP_003757518.1 CDS Hden_3404 NC_014313.1 3469481 3470914 D TIGRFAM: ATP synthase F1 subunit beta; PFAM: H+transporting two-sector ATPase alpha/subunit beta central region; H+transporting two-sector ATPase alpha/subunit beta domain protein; KEGG: avi:Avi_4106 ATP synthase F1 subunit beta; SMART: ATPase AAA; ATP synthase F1 subunit beta 3469481..3470914 Hyphomicrobium denitrificans ATCC 51888 9389320 YP_003757519.1 CDS Hden_3405 NC_014313.1 3470974 3471246 D KEGG: cak:Caul_4736 hypothetical protein; hypothetical protein 3470974..3471246 Hyphomicrobium denitrificans ATCC 51888 9389321 YP_003757520.1 CDS Hden_3406 NC_014313.1 3471300 3471698 D KEGG: pla:Plav_1466 ATP synthase F1 epsilon subunit; TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: ATPase, F1 complex, delta/subunit epsilon-like; ATP synthase F1 subunit epsilon 3471300..3471698 Hyphomicrobium denitrificans ATCC 51888 9389322 YP_003757521.1 CDS Hden_3407 NC_014313.1 3471781 3472302 R PFAM: NUDIX hydrolase; KEGG: mes:Meso_3449 dinucleoside polyphosphate hydrolase; NUDIX hydrolase complement(3471781..3472302) Hyphomicrobium denitrificans ATCC 51888 9389323 YP_003757522.1 CDS Hden_3408 NC_014313.1 3472486 3473019 R PFAM: NUDIX hydrolase; KEGG: mlo:mll3998 dinucleoside polyphosphate hydrolase; NUDIX hydrolase complement(3472486..3473019) Hyphomicrobium denitrificans ATCC 51888 9389324 YP_003757523.1 CDS Hden_3409 NC_014313.1 3473106 3474536 R TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; KEGG: bja:blr0434 carboxy-terminal protease; SMART: peptidase S41; PDZ/DHR/GLGF domain protein; carboxyl-terminal protease complement(3473106..3474536) Hyphomicrobium denitrificans ATCC 51888 9389325 YP_003757524.1 CDS Hden_3410 NC_014313.1 3474536 3476110 R PFAM: peptidase M23; KEGG: bja:blr0433 hypothetical protein; peptidase M23 complement(3474536..3476110) Hyphomicrobium denitrificans ATCC 51888 9389326 YP_003757525.1 CDS Hden_3411 NC_014313.1 3476368 3476556 D PFAM: Hypoxia induced protein conserved region; KEGG: pla:Plav_1612 hypoxia induced protein region; hypoxia induced protein 3476368..3476556 Hyphomicrobium denitrificans ATCC 51888 9389327 YP_003757526.1 CDS Hden_3412 NC_014313.1 3476630 3477211 D TIGRFAM: ATP/cobalamin adenosyltransferase; KEGG: pla:Plav_1609 ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP/cobalamin adenosyltransferase 3476630..3477211 Hyphomicrobium denitrificans ATCC 51888 9389328 YP_003757527.1 CDS Hden_3413 NC_014313.1 3477480 3478235 D KEGG: atc:AGR_L_2463 electron transfer flavoprotein beta-subunit (beta-ETF) (electron transfer flavoprotein small subunit) (ETFSS); PFAM: electron transfer flavoprotein alpha/beta-subunit; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein alpha/beta-subunit 3477480..3478235 Hyphomicrobium denitrificans ATCC 51888 9389329 YP_003757528.1 CDS Hden_3414 NC_014313.1 3478235 3479179 D KEGG: rpa:RPA4749 electron transfer flavoprotein subunit alpha; PFAM: electron transfer flavoprotein subunit alpha ; electron transfer flavoprotein alpha/beta-subunit; SMART: electron transfer flavoprotein alpha/beta-subunit; electron transfer flavoprotein subunit alpha 3478235..3479179 Hyphomicrobium denitrificans ATCC 51888 9389330 YP_003757529.1 CDS Hden_3415 NC_014313.1 3479216 3480145 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: met:M446_2005 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein 3479216..3480145 Hyphomicrobium denitrificans ATCC 51888 9389331 YP_003757530.1 CDS Hden_3416 NC_014313.1 3480152 3480955 R KEGG: sde:Sde_1317 RND efflux transporter; hypothetical protein complement(3480152..3480955) Hyphomicrobium denitrificans ATCC 51888 9389332 YP_003757531.1 CDS Hden_3417 NC_014313.1 3481077 3481835 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sus:acid_5492 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3481077..3481835 Hyphomicrobium denitrificans ATCC 51888 9389333 YP_003757532.1 CDS Hden_3418 NC_014313.1 3481819 3482577 R KEGG: hne:HNE_0420 pyrimidine 5'-nucleotidase; TIGRFAM: pyrimidine 5'-nucleotidase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: haloacid dehalogenase; pyrimidine 5'-nucleotidase complement(3481819..3482577) Hyphomicrobium denitrificans ATCC 51888 9389334 YP_003757533.1 CDS Hden_3419 NC_014313.1 3482577 3483530 R KEGG: pla:Plav_0297 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase complement(3482577..3483530) Hyphomicrobium denitrificans ATCC 51888 9389335 YP_003757534.1 CDS Hden_3420 NC_014313.1 3483791 3485644 D PFAM: Clp domain protein; KEGG: ssc:100113399 basic proline-rich protein; Clp domain-containing protein 3483791..3485644 Hyphomicrobium denitrificans ATCC 51888 9389336 YP_003757535.1 CDS Hden_3421 NC_014313.1 3485674 3486339 R KEGG: bja:blr8099 ribosome biogenesis GTP-binding protein YsxC; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; ribosome biogenesis GTP-binding protein YsxC complement(3485674..3486339) Hyphomicrobium denitrificans ATCC 51888 9389337 YP_003757536.1 CDS Hden_3422 NC_014313.1 3486374 3488248 R KEGG: azc:AZC_4053 inner membrane protein translocase component YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; membrane protein insertase, YidC/Oxa1 family domain containing; PFAM: hypothetical protein; YidC/Oxa1 family membrane protein insertase complement(3486374..3488248) Hyphomicrobium denitrificans ATCC 51888 9389338 YP_003757537.1 CDS Hden_3423 NC_014313.1 3488341 3488805 R manually curated; TIGRFAM: ribonuclease P protein component; KEGG: bmr:BMI_II1016 ribonuclease P; PFAM: ribonuclease P protein; ribonuclease P protein component complement(3488341..3488805) Hyphomicrobium denitrificans ATCC 51888 9389339 YP_003757538.1 CDS Hden_3424 NC_014313.1 3489444 3490898 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mes:Meso_0352 pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3489444..3490898 Hyphomicrobium denitrificans ATCC 51888 9389340 YP_003757539.1 CDS Hden_3425 NC_014313.1 3490911 3492446 D KEGG: rpc:RPC_0820 periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; integral membrane sensor signal transduction histidine kinase 3490911..3492446 Hyphomicrobium denitrificans ATCC 51888 9389341 YP_003757540.1 CDS Hden_3427 NC_014313.1 3494365 3494802 D PFAM: protein of unknown function DUF411; KEGG: mes:Meso_4389 hypothetical protein; hypothetical protein 3494365..3494802 Hyphomicrobium denitrificans ATCC 51888 9389344 YP_003757541.1 CDS Hden_3428 NC_014313.1 3495137 3496003 D KEGG: oca:OCAR_4549 hypothetical protein; PFAM: Rhodanese domain protein; SMART: rhodanese; rhodanese 3495137..3496003 Hyphomicrobium denitrificans ATCC 51888 9389345 YP_003757542.1 CDS Hden_3429 NC_014313.1 3496108 3497145 D PFAM: pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: mlo:mlr0353 cysteine synthase A; pyridoxal-5'-phosphate-dependent protein subunit beta 3496108..3497145 Hyphomicrobium denitrificans ATCC 51888 9389346 YP_003757543.1 CDS Hden_3430 NC_014313.1 3497331 3497612 D KEGG: osa:4334020 hypothetical protein; hypothetical protein 3497331..3497612 Hyphomicrobium denitrificans ATCC 51888 9389347 YP_003757544.1 CDS Hden_3431 NC_014313.1 3497705 3498148 R KEGG: cbe:Cbei_3763 periplasmic binding protein; hypothetical protein complement(3497705..3498148) Hyphomicrobium denitrificans ATCC 51888 9389348 YP_003757545.1 CDS Hden_3432 NC_014313.1 3498528 3498746 D KEGG: ang:An02g08610 hypothetical protein; hypothetical protein 3498528..3498746 Hyphomicrobium denitrificans ATCC 51888 9389349 YP_003757546.1 CDS Hden_3434 NC_014313.1 3499453 3501873 D KEGG: rfr:Rfer_2038 periplasmic sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; histidine kinase HAMP region domain protein; integral membrane sensor hybrid histidine kinase 3499453..3501873 Hyphomicrobium denitrificans ATCC 51888 9389351 YP_003757547.1 CDS Hden_3435 NC_014313.1 3501891 3502550 D KEGG: smd:Smed_5114 two component LuxR family transcriptional regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; LuxR family transcriptional regulator 3501891..3502550 Hyphomicrobium denitrificans ATCC 51888 9389352 YP_003757548.1 CDS Hden_3436 NC_014313.1 3502590 3503003 R KEGG: azl:AZL_006960 two-component hybrid sensor and regulator; PFAM: response regulator receiver; SMART: response regulator receiver; response regulator receiver protein complement(3502590..3503003) Hyphomicrobium denitrificans ATCC 51888 9389353 YP_003757549.1 CDS Hden_3437 NC_014313.1 3503249 3503956 D PFAM: protein of unknown function DUF1345; KEGG: dar:Daro_0590 hypothetical protein; hypothetical protein 3503249..3503956 Hyphomicrobium denitrificans ATCC 51888 9389354 YP_003757550.1 CDS Hden_3438 NC_014313.1 3504063 3505931 D TIGRFAM: PAS sensor protein; PFAM: HWE histidine kinase; PAS fold domain protein; hypothetical protein; response regulator receiver; KEGG: pla:Plav_0358 signal transduction histidine kinase; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; ATP-binding region ATPase domain protein; signal transduction histidine kinase 3504063..3505931 Hyphomicrobium denitrificans ATCC 51888 9389355 YP_003757551.1 CDS Hden_3439 NC_014313.1 3505947 3507059 R KEGG: ccs:CCNA_01509 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; beta-ketoacyl-acyl-carrier-protein synthase III complement(3505947..3507059) Hyphomicrobium denitrificans ATCC 51888 9389356 YP_003757552.1 CDS Hden_3440 NC_014313.1 3507388 3508242 R KEGG: mno:Mnod_4423 short-chain dehydrogenase/reductase SDR; manually curated; PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(3507388..3508242) Hyphomicrobium denitrificans ATCC 51888 9389357 YP_003757553.1 CDS Hden_3441 NC_014313.1 3508555 3510858 D PFAM: extracellular ligand-binding receptor; KEGG: bja:blr0080 hypothetical protein; extracellular ligand-binding receptor 3508555..3510858 Hyphomicrobium denitrificans ATCC 51888 9389358 YP_003757554.1 CDS Hden_3442 NC_014313.1 3511124 3514306 D PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4615 acriflavin resistance protein; acriflavin resistance protein 3511124..3514306 Hyphomicrobium denitrificans ATCC 51888 9389359 YP_003757555.1 CDS Hden_3443 NC_014313.1 3514296 3515513 D KEGG: rpb:RPB_3608 secretion protein HlyD; TIGRFAM: efflux transporter RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 3514296..3515513 Hyphomicrobium denitrificans ATCC 51888 9389360 YP_003757556.1 CDS Hden_3444 NC_014313.1 3515588 3515938 D KEGG: sbi:SORBI_04g030110 hypothetical protein; hypothetical protein 3515588..3515938 Hyphomicrobium denitrificans ATCC 51888 9389361 YP_003757557.1 CDS Hden_3445 NC_014313.1 3516479 3517468 R PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: pst:PSPTO_3616 hypothetical protein; peptidase C14 caspase catalytic subunit p20 complement(3516479..3517468) Hyphomicrobium denitrificans ATCC 51888 9389362 YP_003757558.1 CDS Hden_3446 NC_014313.1 3517468 3517857 R KEGG: vco:VC0395_0570 hypothetical protein; hypothetical protein complement(3517468..3517857) Hyphomicrobium denitrificans ATCC 51888 9389363 YP_003757559.1 CDS Hden_3447 NC_014313.1 3518557 3520290 R PFAM: HemY domain protein; KEGG: met:M446_4536 HemY domain-containing protein; HemY domain-containing protein complement(3518557..3520290) Hyphomicrobium denitrificans ATCC 51888 9389365 YP_003757560.1 CDS Hden_3448 NC_014313.1 3520311 3522035 R KEGG: mrd:Mrad2831_2071 hypothetical protein; hypothetical protein complement(3520311..3522035) Hyphomicrobium denitrificans ATCC 51888 9389366 YP_003757561.1 CDS Hden_3449 NC_014313.1 3522157 3522897 R PFAM: uroporphyrinogen III synthase HEM4; KEGG: rsq:Rsph17025_4324 hypothetical protein; uroporphyrinogen III synthase HEM4 complement(3522157..3522897) Hyphomicrobium denitrificans ATCC 51888 9389367 YP_003757562.1 CDS Hden_3450 NC_014313.1 3522897 3523829 R KEGG: pde:Pden_3630 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: porphobilinogen deaminase; porphobilinogen deaminase complement(3522897..3523829) Hyphomicrobium denitrificans ATCC 51888 9389368 YP_003757563.1 CDS Hden_3451 NC_014313.1 3523941 3525044 D PFAM: peptidase M22 glycoprotease; manually curated; KEGG: oan:Oant_0974 DNA-binding/iron metalloprotein/AP endonuclease; TIGRFAM: metalloendopeptidase, glycoprotease family; metalloendopeptidase, glycoprotease family 3523941..3525044 Hyphomicrobium denitrificans ATCC 51888 9389369 YP_003757564.1 CDS Hden_3452 NC_014313.1 3525093 3526103 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: pla:Plav_1343 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 3525093..3526103 Hyphomicrobium denitrificans ATCC 51888 9389370 YP_003757565.1 CDS Hden_3453 NC_014313.1 3526353 3526790 D PFAM: protein of unknown function DUF55; KEGG: mes:Meso_3206 hypothetical protein; hypothetical protein 3526353..3526790 Hyphomicrobium denitrificans ATCC 51888 9389371 YP_003757566.1 CDS Hden_3454 NC_014313.1 3526787 3527458 D PFAM: ribosomal L11 methyltransferase; KEGG: xau:Xaut_1107 hypothetical protein; ribosomal L11 methyltransferase 3526787..3527458 Hyphomicrobium denitrificans ATCC 51888 9389372 YP_003757567.1 CDS Hden_3455 NC_014313.1 3527571 3529520 D KEGG: xau:Xaut_1479 acetyl-CoA synthetase; TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate/CoA ligase 3527571..3529520 Hyphomicrobium denitrificans ATCC 51888 9389373 YP_003757568.1 CDS Hden_3456 NC_014313.1 3529517 3529738 R PFAM: protein of unknown function DUF1674; KEGG: jan:Jann_4039 hypothetical protein; hypothetical protein complement(3529517..3529738) Hyphomicrobium denitrificans ATCC 51888 9389374 YP_003757569.1 CDS Hden_3457 NC_014313.1 3529866 3530864 D PFAM: peptidase M48 Ste24p; KEGG: smd:Smed_3192 heat shock protein HtpX; peptidase M48 Ste24p 3529866..3530864 Hyphomicrobium denitrificans ATCC 51888 9389375 YP_003757570.1 CDS Hden_3458 NC_014313.1 3530866 3532272 D KEGG: rpe:RPE_0028 sun protein; TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; sun protein 3530866..3532272 Hyphomicrobium denitrificans ATCC 51888 9389376 YP_003757571.1 CDS Hden_3459 NC_014313.1 3532354 3534051 D PFAM: Heparinase II/III; KEGG: azc:AZC_4697 hypothetical protein; Heparinase II/III 3532354..3534051 Hyphomicrobium denitrificans ATCC 51888 9389377 YP_003757572.1 CDS Hden_3460 NC_014313.1 3534174 3535757 D SMART: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; KEGG: rpe:RPE_0026 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 3534174..3535757 Hyphomicrobium denitrificans ATCC 51888 9389378 YP_003757573.1 CDS Hden_3461 NC_014313.1 3536010 3537470 R PFAM: major facilitator superfamily MFS_1; KEGG: oca:OCAR_4338 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(3536010..3537470) Hyphomicrobium denitrificans ATCC 51888 9389379 YP_003757574.1 CDS Hden_3462 NC_014313.1 3537533 3538153 R PFAM: protein of unknown function DUF477; KEGG: bid:Bind_3480 hypothetical protein; hypothetical protein complement(3537533..3538153) Hyphomicrobium denitrificans ATCC 51888 9389380 YP_003757575.1 CDS Hden_3463 NC_014313.1 3538189 3539031 R PFAM: protein of unknown function DUF477; KEGG: ccs:CCNA_03569 hypothetical protein; hypothetical protein complement(3538189..3539031) Hyphomicrobium denitrificans ATCC 51888 9389381 YP_003757576.1 CDS Hden_3464 NC_014313.1 3539068 3539688 R PFAM: LemA family protein; KEGG: azc:AZC_2562 LemA protein; LemA family protein complement(3539068..3539688) Hyphomicrobium denitrificans ATCC 51888 9389382 YP_003757577.1 CDS Hden_3465 NC_014313.1 3540291 3540503 R KEGG: oan:Oant_4124 hypothetical protein; hypothetical protein complement(3540291..3540503) Hyphomicrobium denitrificans ATCC 51888 9389383 YP_003757578.1 CDS Hden_3466 NC_014313.1 3540679 3541017 R KEGG: dya:Dyak_GE15943 GE15943 gene product from transcript GE15943-RA; hypothetical protein complement(3540679..3541017) Hyphomicrobium denitrificans ATCC 51888 9389384 YP_003757579.1 CDS Hden_3467 NC_014313.1 3541149 3541550 R KEGG: nvi:100121963 similar to conserved hypothetical protein; hypothetical protein complement(3541149..3541550) Hyphomicrobium denitrificans ATCC 51888 9389385 YP_003757580.1 CDS Hden_3468 NC_014313.1 3542060 3542599 D PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bmr:BMI_II888 hypothetical protein; YbaK/prolyl-tRNA synthetase associated protein 3542060..3542599 Hyphomicrobium denitrificans ATCC 51888 9389387 YP_003757581.1 CDS Hden_3469 NC_014313.1 3542605 3543519 D KEGG: pla:Plav_1312 thioredoxin; TIGRFAM: thioredoxin; PFAM: thioredoxin domain; thioredoxin 3542605..3543519 Hyphomicrobium denitrificans ATCC 51888 9389388 YP_003757582.1 CDS Hden_3470 NC_014313.1 3543531 3544232 D KEGG: mno:Mnod_5189 peptidase S16 lon domain protein; PFAM: peptidase S16; SMART: peptidase S16 lon domain protein; peptidase S16 3543531..3544232 Hyphomicrobium denitrificans ATCC 51888 9389389 YP_003757583.1 CDS Hden_3471 NC_014313.1 3544262 3544489 D PFAM: protein of unknown function DUF343; KEGG: bid:Bind_2731 hypothetical protein; hypothetical protein 3544262..3544489 Hyphomicrobium denitrificans ATCC 51888 9389390 YP_003757584.1 CDS Hden_3472 NC_014313.1 3544648 3546603 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; response regulator receiver; KEGG: azl:AZL_024550 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; response regulator receiver; PAS/PAC sensor hybrid histidine kinase 3544648..3546603 Hyphomicrobium denitrificans ATCC 51888 9389391 YP_003757585.1 CDS Hden_3473 NC_014313.1 3546683 3547651 D KEGG: mrd:Mrad2831_1116 hypothetical protein; hypothetical protein 3546683..3547651 Hyphomicrobium denitrificans ATCC 51888 9389392 YP_003757586.1 CDS Hden_3474 NC_014313.1 3547898 3550738 D TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS III domain protein; MutS IV domain protein; KEGG: pla:Plav_3599 DNA mismatch repair protein MutS; SMART: DNA mismatch repair protein MutS; MutS III domain protein; DNA mismatch repair protein MutS 3547898..3550738 Hyphomicrobium denitrificans ATCC 51888 9389393 YP_003757587.1 CDS Hden_3475 NC_014313.1 3550735 3553533 D SMART: metal-dependent phosphohydrolase HD region; TIGRFAM: protein-P-II uridylyltransferase; KEGG: mlo:mll5321 PII uridylyl-transferase; PFAM: GlnD PII-uridylyltransferase; metal-dependent phosphohydrolase HD sub domain; amino acid-binding ACT domain protein; UTP-GlnB uridylyltransferase 3550735..3553533 Hyphomicrobium denitrificans ATCC 51888 9389394 YP_003757588.1 CDS Hden_3476 NC_014313.1 3553636 3555222 D KEGG: pla:Plav_3604 integral membrane protein MviN; TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; integral membrane protein MviN 3553636..3555222 Hyphomicrobium denitrificans ATCC 51888 9389395 YP_003757589.1 CDS Hden_3477 NC_014313.1 3555292 3556329 D TIGRFAM: tryptophanyl-tRNA synthetase; KEGG: oca:OCAR_4526 tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 3555292..3556329 Hyphomicrobium denitrificans ATCC 51888 9389396 YP_003757590.1 CDS Hden_3478 NC_014313.1 3556329 3556895 D PFAM: UspA domain protein; KEGG: mes:Meso_4036 hypothetical protein; UspA domain-containing protein 3556329..3556895 Hyphomicrobium denitrificans ATCC 51888 9389397 YP_003757591.1 CDS Hden_3479 NC_014313.1 3557041 3557595 D PFAM: Scaffold protein Nfu/NifU ; nitrogen-fixing NifU domain protein; KEGG: bbt:BBta_0040 NifU protein; Scaffold protein Nfu/NifU 3557041..3557595 Hyphomicrobium denitrificans ATCC 51888 9389398 YP_003757592.1 CDS Hden_3480 NC_014313.1 3557670 3558260 D PFAM: nitroreductase; KEGG: bur:Bcep18194_B1060 hypothetical protein; nitroreductase 3557670..3558260 Hyphomicrobium denitrificans ATCC 51888 9389399 YP_003757593.1 CDS Hden_3481 NC_014313.1 3558272 3558970 D PFAM: peptidase M22 glycoprotease; KEGG: azc:AZC_4704 glycoprotease; peptidase M22 glycoprotease 3558272..3558970 Hyphomicrobium denitrificans ATCC 51888 9389400 YP_003757594.1 CDS Hden_3482 NC_014313.1 3558967 3559455 D KEGG: azl:AZL_000470 ribosomal-protein-alanine N-acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 3558967..3559455 Hyphomicrobium denitrificans ATCC 51888 9389401 YP_003757595.1 CDS Hden_3483 NC_014313.1 3559569 3560027 D PFAM: ferric-uptake regulator; KEGG: cak:Caul_0013 ferric uptake regulator family protein; Fur family ferric uptake regulator 3559569..3560027 Hyphomicrobium denitrificans ATCC 51888 9389402 YP_003757596.1 CDS Hden_3484 NC_014313.1 3560024 3560914 D KEGG: pla:Plav_3616 phospholipid/glycerol acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 3560024..3560914 Hyphomicrobium denitrificans ATCC 51888 9389403 YP_003757597.1 CDS Hden_3485 NC_014313.1 3560986 3562335 D TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: protein of unknown function UPF0004 ; radical SAM protein; KEGG: mno:Mnod_0235 RNA modification enzyme, MiaB family; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 3560986..3562335 Hyphomicrobium denitrificans ATCC 51888 9389404 YP_003757598.1 CDS Hden_3486 NC_014313.1 3562461 3563462 D PFAM: PhoH family protein; KEGG: atc:AGR_C_625 PhoH-like protein; PhoH family protein 3562461..3563462 Hyphomicrobium denitrificans ATCC 51888 9389405 YP_003757599.1 CDS Hden_3487 NC_014313.1 3563462 3563977 D PFAM: protein of unknown function UPF0054; KEGG: azc:AZC_0010 hypothetical protein; hypothetical protein 3563462..3563977 Hyphomicrobium denitrificans ATCC 51888 9389406 YP_003757600.1 CDS Hden_3488 NC_014313.1 3563993 3565024 D KEGG: sme:SMc01112 hypothetical protein; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein; CBS domain containing protein 3563993..3565024 Hyphomicrobium denitrificans ATCC 51888 9389407 YP_003757601.1 CDS Hden_3489 NC_014313.1 3565024 3566667 D KEGG: rpa:RPA0444 apolipoprotein N-acyltransferase; TIGRFAM: apolipoprotein N-acyltransferase; PFAM: nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 3565024..3566667 Hyphomicrobium denitrificans ATCC 51888 9389408 YP_003757602.1 CDS Hden_3490 NC_014313.1 3566779 3567243 D KEGG: rhi:NGR_c00470 transcriptional regulator; PFAM: hypothetical protein; SMART: hypothetical protein; XRE family transcriptional regulator 3566779..3567243 Hyphomicrobium denitrificans ATCC 51888 9389409 YP_003757603.1 CDS Hden_3491 NC_014313.1 3567457 3568662 D TIGRFAM: S-adenosylmethionine synthetase; KEGG: rpb:RPB_1588 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 3567457..3568662 Hyphomicrobium denitrificans ATCC 51888 9389410 YP_003757604.1 CDS Hden_3492 NC_014313.1 3568747 3569538 D KEGG: pzu:PHZ_c3447 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 3568747..3569538 Hyphomicrobium denitrificans ATCC 51888 9389411 YP_003757605.1 CDS Hden_3493 NC_014313.1 3569665 3570306 D PFAM: protein of unknown function DUF150; KEGG: bmc:BAbS19_I20230 hypothetical protein; hypothetical protein 3569665..3570306 Hyphomicrobium denitrificans ATCC 51888 9389412 YP_003757606.1 CDS Hden_3494 NC_014313.1 3570311 3571942 D TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; KEGG: msl:Msil_2297 NusA antitermination factor; SMART: KH domain protein; NusA antitermination factor 3570311..3571942 Hyphomicrobium denitrificans ATCC 51888 9389413 YP_003757607.1 CDS Hden_3495 NC_014313.1 3572038 3572655 D PFAM: protein of unknown function DUF448; KEGG: oan:Oant_0748 hypothetical protein; hypothetical protein 3572038..3572655 Hyphomicrobium denitrificans ATCC 51888 9389414 YP_003757608.1 CDS Hden_3496 NC_014313.1 3572667 3575393 D KEGG: bja:bll0783 translation initiation factor IF-2; TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein ; elongation factor Tu domain 2 protein; translation initiation factor IF-2 3572667..3575393 Hyphomicrobium denitrificans ATCC 51888 9389415 YP_003757609.1 CDS Hden_3497 NC_014313.1 3575546 3576088 D KEGG: cpi:Cpin_0371 hypothetical protein; hypothetical protein 3575546..3576088 Hyphomicrobium denitrificans ATCC 51888 9389416 YP_003757610.1 CDS Hden_3498 NC_014313.1 3576103 3576501 D KEGG: mno:Mnod_4619 ribosome-binding factor A; TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; ribosome-binding factor A 3576103..3576501 Hyphomicrobium denitrificans ATCC 51888 9389417 YP_003757611.1 CDS Hden_3499 NC_014313.1 3576507 3577427 D KEGG: oca:OCAR_4505 tRNA pseudouridine synthase B; TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B 3576507..3577427 Hyphomicrobium denitrificans ATCC 51888 9389418 YP_003757612.1 CDS Hden_3500 NC_014313.1 3577459 3578283 D PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: dac:Daci_2795 3''-kinase; aminoglycoside/hydroxyurea antibiotic resistance kinase 3577459..3578283 Hyphomicrobium denitrificans ATCC 51888 9389419 YP_003757613.1 CDS Hden_3501 NC_014313.1 3578466 3578747 D KEGG: sit:TM1040_0081 30S ribosomal protein S15; TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; 30S ribosomal protein S15 3578466..3578747 Hyphomicrobium denitrificans ATCC 51888 9389420 YP_003757614.1 CDS Hden_3502 NC_014313.1 3578919 3581120 D SMART: KH domain protein; TIGRFAM: polyribonucleotide nucleotidyltransferase; KEGG: msl:Msil_0268 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Exoribonuclease, phosphorolytic domain 2; K Homology, type 1, subgroup; polynucleotide phosphorylase, phosphorolytic RNA-binding; polyribonucleotide nucleotidyltransferase 3578919..3581120 Hyphomicrobium denitrificans ATCC 51888 9389421 YP_003757615.1 CDS Hden_3503 NC_014313.1 3581424 3581684 R KEGG: sgr:SGR_268 secreted metalloprotease; hypothetical protein complement(3581424..3581684) Hyphomicrobium denitrificans ATCC 51888 9389422 YP_003757616.1 CDS Hden_3504 NC_014313.1 3581839 3582684 R KEGG: rce:RC1_3325 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(3581839..3582684) Hyphomicrobium denitrificans ATCC 51888 9389423 YP_003757617.1 CDS Hden_3505 NC_014313.1 3582731 3583600 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: azc:AZC_4644 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR complement(3582731..3583600) Hyphomicrobium denitrificans ATCC 51888 9389424 YP_003757618.1 CDS Hden_3506 NC_014313.1 3583735 3584967 R PFAM: beta-ketoacyl synthase; KEGG: oca:OCAR_4498 3-oxoacyl-(acyl carrier protein) synthase I; beta-ketoacyl synthase complement(3583735..3584967) Hyphomicrobium denitrificans ATCC 51888 9389425 YP_003757619.1 CDS Hden_3507 NC_014313.1 3585031 3585555 R TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; KEGG: rpc:RPC_0349 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA complement(3585031..3585555) Hyphomicrobium denitrificans ATCC 51888 9389426 YP_003757620.1 CDS Hden_3508 NC_014313.1 3585820 3586266 D PFAM: ferric-uptake regulator; KEGG: ret:RHE_CH00106 iron transcriptional regulator protein; Fur family ferric uptake regulator 3585820..3586266 Hyphomicrobium denitrificans ATCC 51888 9389427 YP_003757621.1 CDS Hden_3509 NC_014313.1 3586292 3586849 R PFAM: protein of unknown function DUF1058; KEGG: msl:Msil_2486 protein of unknown function DUF1058; hypothetical protein complement(3586292..3586849) Hyphomicrobium denitrificans ATCC 51888 9389428 YP_003757622.1 CDS Hden_3510 NC_014313.1 3587063 3588061 D KEGG: mag:amb0195 lactate dehydrogenase and related dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; glyoxylate reductase 3587063..3588061 Hyphomicrobium denitrificans ATCC 51888 9389429 YP_003757623.1 CDS Hden_3511 NC_014313.1 3588101 3588937 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: xau:Xaut_4128 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein complement(3588101..3588937) Hyphomicrobium denitrificans ATCC 51888 9389430 YP_003757624.1 CDS Hden_3512 NC_014313.1 3588958 3589959 R KEGG: mno:Mnod_5186 cysteine synthase A; TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: pyridoxal-5'-phosphate-dependent protein subunit beta; cysteine synthase complement(3588958..3589959) Hyphomicrobium denitrificans ATCC 51888 9389431 YP_003757625.1 CDS Hden_3513 NC_014313.1 3590092 3590670 R TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; KEGG: bja:bll0758 deoxyuridine 5'-triphosphate nucleotidohydrolase; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(3590092..3590670) Hyphomicrobium denitrificans ATCC 51888 9389432 YP_003757626.1 CDS Hden_3514 NC_014313.1 3590667 3591947 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; KEGG: xau:Xaut_0078 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(3590667..3591947) Hyphomicrobium denitrificans ATCC 51888 9389433 YP_003757627.1 CDS Hden_3515 NC_014313.1 3592070 3592612 D PFAM: protein of unknown function DUF461; KEGG: rpb:RPB_2594 hypothetical protein; hypothetical protein 3592070..3592612 Hyphomicrobium denitrificans ATCC 51888 9389434 YP_003757628.1 CDS Hden_3516 NC_014313.1 3593066 3594994 D KEGG: afl:Aflv_2264 sodium:solute symporter; TIGRFAM: solute symporter protein; PFAM: Na+/solute symporter; solute symporter protein 3593066..3594994 Hyphomicrobium denitrificans ATCC 51888 9389435 YP_003757629.1 CDS Hden_3517 NC_014313.1 3595063 3596559 D KEGG: bte:BTH_I0600 glycerol-3-phosphate dehydrogenase; PFAM: FAD dependent oxidoreductase; glycerol-3-phosphate dehydrogenase 3595063..3596559 Hyphomicrobium denitrificans ATCC 51888 9389436 YP_003757630.1 CDS Hden_3518 NC_014313.1 3596576 3597100 R KEGG: msl:Msil_0973 hypothetical protein; hypothetical protein complement(3596576..3597100) Hyphomicrobium denitrificans ATCC 51888 9389437 YP_003757631.1 CDS Hden_3519 NC_014313.1 3597386 3598558 R KEGG: avi:Avi_0827 two component sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase complement(3597386..3598558) Hyphomicrobium denitrificans ATCC 51888 9389438 YP_003757632.1 CDS Hden_3520 NC_014313.1 3598870 3601500 D PFAM: protein of unknown function DUF470; protein of unknown function DUF471; protein of unknown function DUF472; KEGG: ade:Adeh_2257 hypothetical protein; hypothetical protein 3598870..3601500 Hyphomicrobium denitrificans ATCC 51888 9389439 YP_003757633.1 CDS Hden_3521 NC_014313.1 3601490 3602875 D PFAM: virulence factor family protein; KEGG: virulence factor family protein; virulence factor family protein 3601490..3602875 Hyphomicrobium denitrificans ATCC 51888 9389440 YP_003757634.1 CDS Hden_3522 NC_014313.1 3603167 3604288 R PFAM: acyltransferase 3; KEGG: sun:SUN_0329 hypothetical protein; acyltransferase 3 complement(3603167..3604288) Hyphomicrobium denitrificans ATCC 51888 9389442 YP_003757635.1 CDS Hden_3523 NC_014313.1 3604424 3605083 R PFAM: rhomboid family protein; KEGG: hau:Haur_2553 rhomboid family protein; rhomboid family protein complement(3604424..3605083) Hyphomicrobium denitrificans ATCC 51888 9389443 YP_003757636.1 CDS Hden_3524 NC_014313.1 3605113 3605892 R TIGRFAM: ubiquinone biosynthesis O-methyltransferase; KEGG: pla:Plav_1742 ubiquinone biosynthesis O-methyltransferase; PFAM: methyltransferase type 11; ubiquinone biosynthesis O-methyltransferase complement(3605113..3605892) Hyphomicrobium denitrificans ATCC 51888 9389444 YP_003757637.1 CDS Hden_3525 NC_014313.1 3606101 3607363 D KEGG: pla:Plav_1743 aspartate kinase; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 3606101..3607363 Hyphomicrobium denitrificans ATCC 51888 9389445 YP_003757638.1 CDS Hden_3526 NC_014313.1 3607435 3609729 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: azc:AZC_4491 phosphoenolpyruvate-protein phosphotransferase; SMART: GAF domain protein; PTSINtr with GAF domain, PtsP 3607435..3609729 Hyphomicrobium denitrificans ATCC 51888 9389446 YP_003757639.1 CDS Hden_3527 NC_014313.1 3609817 3610530 D KEGG: pla:Plav_3060 SH3 type 3 domain-containing protein; hypothetical protein 3609817..3610530 Hyphomicrobium denitrificans ATCC 51888 9389447 YP_003757640.1 CDS Hden_3528 NC_014313.1 3610593 3611672 D KEGG: mes:Meso_2999 peptide chain release factor 1; TIGRFAM: peptide chain release factor 1; PFAM: class I peptide chain release factor; PCRF domain protein; peptide chain release factor 1 3610593..3611672 Hyphomicrobium denitrificans ATCC 51888 9389448 YP_003757641.1 CDS Hden_3529 NC_014313.1 3611686 3612573 D KEGG: nha:Nham_0469 HemK family modification methylase; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small; protein-(glutamine-N5) methyltransferase, release factor-specific 3611686..3612573 Hyphomicrobium denitrificans ATCC 51888 9389449 YP_003757642.1 CDS Hden_3530 NC_014313.1 3612539 3612742 D hypothetical protein 3612539..3612742 Hyphomicrobium denitrificans ATCC 51888 9389450 YP_003757643.1 CDS Hden_3531 NC_014313.1 3613014 3613976 D KEGG: mno:Mnod_0114 hypothetical protein; hypothetical protein 3613014..3613976 Hyphomicrobium denitrificans ATCC 51888 9389451 YP_003757644.1 CDS Hden_3532 NC_014313.1 3614402 3616996 D TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; ATPase AAA; Clp domain protein; Clp ATPase-like; KEGG: rpd:RPD_4095 ATPase AAA-2; SMART: ATPase AAA; ATP-dependent chaperone ClpB 3614402..3616996 Hyphomicrobium denitrificans ATCC 51888 9389452 YP_003757645.1 CDS Hden_3533 NC_014313.1 3617102 3617797 R PFAM: porin; KEGG: oan:Oant_0133 porin; porin complement(3617102..3617797) Hyphomicrobium denitrificans ATCC 51888 9389453 YP_003757646.1 CDS Hden_3534 NC_014313.1 3617910 3619028 D SMART: regulatory protein LuxR; KEGG: mex:Mext_1995 regulatory protein LuxR; LuxR family transcriptional regulator 3617910..3619028 Hyphomicrobium denitrificans ATCC 51888 9389454 YP_003757647.1 CDS Hden_3535 NC_014313.1 3619207 3619608 D KEGG: mno:Mnod_1552 VrrB protein; hypothetical protein 3619207..3619608 Hyphomicrobium denitrificans ATCC 51888 9389455 YP_003757648.1 CDS Hden_3536 NC_014313.1 3619700 3619942 R KEGG: nha:Nham_0174 hypothetical protein; hypothetical protein complement(3619700..3619942) Hyphomicrobium denitrificans ATCC 51888 9389456 YP_003757649.1 CDS Hden_3537 NC_014313.1 3620205 3621602 D PFAM: citrate transporter; KEGG: azl:AZL_d00120 hypothetical protein; citrate transporter 3620205..3621602 Hyphomicrobium denitrificans ATCC 51888 9389457 YP_003757650.1 CDS Hden_3538 NC_014313.1 3621792 3623819 R PFAM: peptidase M23; KEGG: bbt:BBta_1196 metalloendopeptidase; peptidase M23 complement(3621792..3623819) Hyphomicrobium denitrificans ATCC 51888 9389458 YP_003757651.1 CDS Hden_3539 NC_014313.1 3630436 3630822 D KEGG: azl:AZL_015580 hypothetical protein; hypothetical protein 3630436..3630822 Hyphomicrobium denitrificans ATCC 51888 9389464 YP_003757652.1 CDS Hden_3540 NC_014313.1 3630830 3631660 D PFAM: iron permease FTR1; KEGG: azc:AZC_2743 high-affinity Fe2+/Pb2+ permease; iron permease FTR1 3630830..3631660 Hyphomicrobium denitrificans ATCC 51888 9389465 YP_003757653.1 CDS Hden_3541 NC_014313.1 3631718 3632185 R PFAM: protein of unknown function DUF1348; KEGG: aba:acid345_2217 hypothetical protein; hypothetical protein complement(3631718..3632185) Hyphomicrobium denitrificans ATCC 51888 9389466 YP_003757654.1 CDS Hden_3542 NC_014313.1 3632301 3632633 D KEGG: bid:Bind_1265 alkylhydroperoxidase; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein 3632301..3632633 Hyphomicrobium denitrificans ATCC 51888 9389467 YP_003757655.1 CDS Hden_3543 NC_014313.1 3632618 3634210 R KEGG: bhe:BH00390 ubiquinone biosynthesis protein AarF; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC transporter; 2-polyprenylphenol 6-hydroxylase complement(3632618..3634210) Hyphomicrobium denitrificans ATCC 51888 9389468 YP_003757656.1 CDS Hden_3544 NC_014313.1 3634425 3634718 R KEGG: ure:UREG_02770 hypothetical protein; hypothetical protein complement(3634425..3634718) Hyphomicrobium denitrificans ATCC 51888 9389469 YP_003757657.1 CDS Hden_3545 NC_014313.1 3634845 3635627 R KEGG: rpe:RPE_0470 ubiquinone/menaquinone biosynthesis methyltransferase; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(3634845..3635627) Hyphomicrobium denitrificans ATCC 51888 9389470 YP_003757658.1 CDS Hden_3546 NC_014313.1 3635705 3636586 D SMART: Formamidopyrimidine-DNA glycosylase catalytic domain protein; TIGRFAM: formamidopyrimidine-DNA glycosylase; KEGG: msl:Msil_3033 formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 3635705..3636586 Hyphomicrobium denitrificans ATCC 51888 9389471 YP_003757659.1 CDS Hden_3547 NC_014313.1 3636592 3637206 R KEGG: sal:Sala_0839 hypothetical protein; hypothetical protein complement(3636592..3637206) Hyphomicrobium denitrificans ATCC 51888 9389472 YP_003757660.1 CDS Hden_3548 NC_014313.1 3637246 3637830 R KEGG: kra:Krad_4256 drug resistance transporter EmrB/QacA subfamily; hypothetical protein complement(3637246..3637830) Hyphomicrobium denitrificans ATCC 51888 9389473 YP_003757661.1 CDS Hden_3549 NC_014313.1 3638132 3638398 D KEGG: smd:Smed_0001 30S ribosomal protein S20; TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; 30S ribosomal protein S20 3638132..3638398 Hyphomicrobium denitrificans ATCC 51888 9389474 Hden_R0001 tRNA Hden_R0001 NC_014313.1 196818 196907 R tRNA-Ser complement(196818..196907) Hyphomicrobium denitrificans ATCC 51888 9386073 Hden_R0002 tRNA Hden_R0002 NC_014313.1 217086 217171 D tRNA-Leu 217086..217171 Hyphomicrobium denitrificans ATCC 51888 9386095 Hden_R0004 tRNA Hden_R0004 NC_014313.1 368951 369027 R tRNA-Arg complement(368951..369027) Hyphomicrobium denitrificans ATCC 51888 9386236 Hden_R0005 tRNA Hden_R0005 NC_014313.1 417303 417376 R tRNA-Gly complement(417303..417376) Hyphomicrobium denitrificans ATCC 51888 9386284 Hden_R0006 tRNA Hden_R0006 NC_014313.1 439526 439615 D tRNA-Ser 439526..439615 Hyphomicrobium denitrificans ATCC 51888 9386304 Hden_R0007 tRNA Hden_R0007 NC_014313.1 681386 681478 D tRNA-Ser 681386..681478 Hyphomicrobium denitrificans ATCC 51888 9386534 Hden_R0008 tRNA Hden_R0008 NC_014313.1 861146 861219 R tRNA-Gln complement(861146..861219) Hyphomicrobium denitrificans ATCC 51888 9386703 Hden_R0009 tRNA Hden_R0009 NC_014313.1 941475 941549 R tRNA-Thr complement(941475..941549) Hyphomicrobium denitrificans ATCC 51888 9386785 Hden_R0010 tRNA Hden_R0010 NC_014313.1 943845 943929 D tRNA-Tyr 943845..943929 Hyphomicrobium denitrificans ATCC 51888 9386789 Hden_R0011 tRNA Hden_R0011 NC_014313.1 1054511 1054584 D tRNA-Gly 1054511..1054584 Hyphomicrobium denitrificans ATCC 51888 9386884 Hden_R0012 tRNA Hden_R0012 NC_014313.1 1058575 1058650 D tRNA-Trp 1058575..1058650 Hyphomicrobium denitrificans ATCC 51888 9386889 Hden_R0013 tRNA Hden_R0013 NC_014313.1 1102354 1102430 D tRNA-Pro 1102354..1102430 Hyphomicrobium denitrificans ATCC 51888 9386940 Hden_R0014 tRNA Hden_R0014 NC_014313.1 1105948 1106024 R tRNA-Arg complement(1105948..1106024) Hyphomicrobium denitrificans ATCC 51888 9386945 Hden_R0015 tRNA Hden_R0015 NC_014313.1 1127819 1127894 D tRNA-Arg 1127819..1127894 Hyphomicrobium denitrificans ATCC 51888 9386969 Hden_R0016 tRNA Hden_R0016 NC_014313.1 1267308 1267382 R tRNA-Asn complement(1267308..1267382) Hyphomicrobium denitrificans ATCC 51888 9387135 Hden_R0017 tRNA Hden_R0017 NC_014313.1 1267608 1267681 R tRNA-Cys complement(1267608..1267681) Hyphomicrobium denitrificans ATCC 51888 9387136 Hden_R0018 tRNA Hden_R0018 NC_014313.1 1324501 1324578 D tRNA-Pro 1324501..1324578 Hyphomicrobium denitrificans ATCC 51888 9387190 Hden_R0019 tRNA Hden_R0019 NC_014313.1 1579161 1579235 D tRNA-Glu 1579161..1579235 Hyphomicrobium denitrificans ATCC 51888 9387418 Hden_R0020 tRNA Hden_R0020 NC_014313.1 1768112 1768201 D tRNA-Ser 1768112..1768201 Hyphomicrobium denitrificans ATCC 51888 9387626 Hden_R0021 tRNA Hden_R0021 NC_014313.1 1856080 1856155 D tRNA-Met 1856080..1856155 Hyphomicrobium denitrificans ATCC 51888 9387721 Hden_R0022 tRNA Hden_R0022 NC_014313.1 1881667 1881741 D tRNA-Val 1881667..1881741 Hyphomicrobium denitrificans ATCC 51888 9387745 Hden_R0023 tRNA Hden_R0023 NC_014313.1 1907958 1908034 R tRNA-Pro complement(1907958..1908034) Hyphomicrobium denitrificans ATCC 51888 9387770 Hden_R0024 tRNA Hden_R0024 NC_014313.1 1908316 1908390 D tRNA-Gln 1908316..1908390 Hyphomicrobium denitrificans ATCC 51888 9387771 Hden_R0025 tRNA Hden_R0025 NC_014313.1 1994123 1994199 R tRNA-Asp complement(1994123..1994199) Hyphomicrobium denitrificans ATCC 51888 9387850 Hden_R0026 tRNA Hden_R0026 NC_014313.1 1994941 1995015 R tRNA-Val complement(1994941..1995015) Hyphomicrobium denitrificans ATCC 51888 9387852 Hden_R0027 tRNA Hden_R0027 NC_014313.1 2002788 2002872 R tRNA-Leu complement(2002788..2002872) Hyphomicrobium denitrificans ATCC 51888 9387859 Hden_R0028 tRNA Hden_R0028 NC_014313.1 2065628 2065703 D tRNA-Glu 2065628..2065703 Hyphomicrobium denitrificans ATCC 51888 9387921 Hden_R0029 tRNA Hden_R0029 NC_014313.1 2120118 2120193 R tRNA-Lys complement(2120118..2120193) Hyphomicrobium denitrificans ATCC 51888 9387973 Hden_R0030 tRNA Hden_R0030 NC_014313.1 2225978 2226052 R tRNA-Lys complement(2225978..2226052) Hyphomicrobium denitrificans ATCC 51888 9388069 Hden_R0031 tRNA Hden_R0031 NC_014313.1 2286597 2286683 R tRNA-Leu complement(2286597..2286683) Hyphomicrobium denitrificans ATCC 51888 9388137 Hden_R0032 tRNA Hden_R0032 NC_014313.1 2385908 2385983 D tRNA-Ala 2385908..2385983 Hyphomicrobium denitrificans ATCC 51888 9388235 Hden_R0033 tRNA Hden_R0033 NC_014313.1 2393999 2394084 D tRNA-Leu 2393999..2394084 Hyphomicrobium denitrificans ATCC 51888 9388244 Hden_R0035 tRNA Hden_R0035 NC_014313.1 2550138 2550214 D tRNA-Met 2550138..2550214 Hyphomicrobium denitrificans ATCC 51888 9388399 Hden_R0036 tRNA Hden_R0036 NC_014313.1 2710634 2710708 R tRNA-Val complement(2710634..2710708) Hyphomicrobium denitrificans ATCC 51888 9388555 Hden_R0037 tRNA Hden_R0037 NC_014313.1 2782168 2782243 R tRNA-Phe complement(2782168..2782243) Hyphomicrobium denitrificans ATCC 51888 9388617 Hden_R0038 tRNA Hden_R0038 NC_014313.1 2789775 2789849 D tRNA-Thr 2789775..2789849 Hyphomicrobium denitrificans ATCC 51888 9388626 Hden_R0040 tRNA Hden_R0040 NC_014313.1 2923962 2924048 R tRNA-Leu complement(2923962..2924048) Hyphomicrobium denitrificans ATCC 51888 9388747 Hden_R0041 tRNA Hden_R0041 NC_014313.1 3106429 3106505 R tRNA-Met complement(3106429..3106505) Hyphomicrobium denitrificans ATCC 51888 9388946 Hden_R0042 tRNA Hden_R0042 NC_014313.1 3227650 3227726 R tRNA-Arg complement(3227650..3227726) Hyphomicrobium denitrificans ATCC 51888 9389071 Hden_R0043 tRNA Hden_R0043 NC_014313.1 3281731 3281806 R tRNA-Ala complement(3281731..3281806) Hyphomicrobium denitrificans ATCC 51888 9389124 Hden_R0044 tRNA Hden_R0044 NC_014313.1 3492616 3492692 D tRNA-Arg 3492616..3492692 Hyphomicrobium denitrificans ATCC 51888 9389342 Hden_R0045 tRNA Hden_R0045 NC_014313.1 3518331 3518406 R tRNA-Thr complement(3518331..3518406) Hyphomicrobium denitrificans ATCC 51888 9389364 Hden_R0046 tRNA Hden_R0046 NC_014313.1 3541853 3541927 R tRNA-Gly complement(3541853..3541927) Hyphomicrobium denitrificans ATCC 51888 9389386 Hden_R0047 tRNA Hden_R0047 NC_014313.1 3602897 3602973 R tRNA-His complement(3602897..3602973) Hyphomicrobium denitrificans ATCC 51888 9389441 Hden_R0049 tRNA Hden_R0049 NC_014313.1 3626270 3626346 D tRNA-Ile 3626270..3626346 Hyphomicrobium denitrificans ATCC 51888 9389460 Hden_R0050 tRNA Hden_R0050 NC_014313.1 3626435 3626510 D tRNA-Ala 3626435..3626510 Hyphomicrobium denitrificans ATCC 51888 9389461 Hden_R0048 rRNA Hden_R0048 NC_014313.1 3624598 3626066 D 16S ribosomal RNA 3624598..3626066 Hyphomicrobium denitrificans ATCC 51888 9389459 Hden_R0051 rRNA Hden_R0051 NC_014313.1 3626879 3629669 D 23S ribosomal RNA 3626879..3629669 Hyphomicrobium denitrificans ATCC 51888 9389462 Hden_R0052 rRNA Hden_R0052 NC_014313.1 3629861 3629975 D 5S ribosomal RNA 3629861..3629975 Hyphomicrobium denitrificans ATCC 51888 9389463