-- dump date 20140619_115308 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 380749000001 SEQ_END SEQ_END NC_011126.1 1559514 1559514 DR NC_011126.1; contig end 1559514..1559514 Hydrogenobaculum sp. Y04AAS1 YP_002120671.1 CDS HY04AAS1_0001 NC_011126.1 265 1599 D KEGG: aae:aq_322 chromosome replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 265..1599 Hydrogenobaculum sp. Y04AAS1 6744473 YP_002120672.1 CDS HY04AAS1_0002 NC_011126.1 1600 2403 R PFAM: protein of unknown function DUF81; KEGG: sto:ST2237 hypothetical protein; hypothetical protein complement(1600..2403) Hydrogenobaculum sp. Y04AAS1 6742780 YP_002120673.1 CDS HY04AAS1_0003 NC_011126.1 2400 2750 R PFAM: t-RNA-binding domain protein; KEGG: aae:aq_422 methionyl-tRNA synthetase beta subunit; t-RNA-binding domain-containing protein complement(2400..2750) Hydrogenobaculum sp. Y04AAS1 6742781 YP_002120674.1 CDS HY04AAS1_0004 NC_011126.1 2810 4258 D TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: cth:Cthe_0282 glycogen/starch synthases, ADP-glucose type; glycogen/starch synthase 2810..4258 Hydrogenobaculum sp. Y04AAS1 6742782 YP_002120675.1 CDS HY04AAS1_0005 NC_011126.1 4258 5445 D KEGG: aae:aq_1468 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 4258..5445 Hydrogenobaculum sp. Y04AAS1 6742783 YP_002120676.1 CDS HY04AAS1_0006 NC_011126.1 5438 6184 D PFAM: protein of unknown function DUF147; KEGG: aae:aq_1467 hypothetical protein; hypothetical protein 5438..6184 Hydrogenobaculum sp. Y04AAS1 6742784 YP_002120677.1 CDS HY04AAS1_0007 NC_011126.1 6189 7586 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sul:SYO3AOP1_0310 RND efflux system, outer membrane lipoprotein, NodT family; RND efflux system, outer membrane lipoprotein, NodT family complement(6189..7586) Hydrogenobaculum sp. Y04AAS1 6742785 YP_002120678.1 CDS HY04AAS1_0008 NC_011126.1 7588 8679 R PFAM: secretion protein HlyD family protein; KEGG: sul:SYO3AOP1_0311 secretion protein HlyD family protein; secretion protein HlyD family protein complement(7588..8679) Hydrogenobaculum sp. Y04AAS1 6742786 YP_002120679.1 CDS HY04AAS1_0009 NC_011126.1 8758 9465 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: sul:SYO3AOP1_0312 ABC transporter; ABC transporter complement(8758..9465) Hydrogenobaculum sp. Y04AAS1 6742787 YP_002120680.1 CDS HY04AAS1_0010 NC_011126.1 9467 10609 R PFAM: protein of unknown function DUF214; KEGG: sul:SYO3AOP1_0313 protein of unknown function DUF214; hypothetical protein complement(9467..10609) Hydrogenobaculum sp. Y04AAS1 6742788 YP_002120681.1 CDS HY04AAS1_0011 NC_011126.1 11078 11563 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: aae:aq_1174 rare lipoprotein A; rare lipoprotein A complement(11078..11563) Hydrogenobaculum sp. Y04AAS1 6742791 YP_002120682.1 CDS HY04AAS1_0012 NC_011126.1 11837 12499 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: aae:aq_906 phosphate transport system regulatory protein; phosphate uptake regulator PhoU 11837..12499 Hydrogenobaculum sp. Y04AAS1 6742792 YP_002120683.1 CDS HY04AAS1_0013 NC_011126.1 12459 14255 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: aae:aq_905 histidine kinase sensor protein; integral membrane sensor signal transduction histidine kinase 12459..14255 Hydrogenobaculum sp. Y04AAS1 6742793 YP_002120684.1 CDS HY04AAS1_0014 NC_011126.1 14245 15384 R PFAM: major facilitator superfamily MFS_1; KEGG: tpd:Teth39_1328 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(14245..15384) Hydrogenobaculum sp. Y04AAS1 6742794 YP_002120685.1 CDS HY04AAS1_0015 NC_011126.1 15381 16352 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(15381..16352) Hydrogenobaculum sp. Y04AAS1 6742795 YP_002120686.1 CDS HY04AAS1_0016 NC_011126.1 16463 17401 D KEGG: sul:SYO3AOP1_0239 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 16463..17401 Hydrogenobaculum sp. Y04AAS1 6742796 YP_002120687.1 CDS HY04AAS1_0017 NC_011126.1 17522 18241 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: aae:aq_1464 pseudouridylate synthase; pseudouridine synthase complement(17522..18241) Hydrogenobaculum sp. Y04AAS1 6742798 YP_002120688.1 CDS folE NC_011126.1 18238 18786 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(18238..18786) Hydrogenobaculum sp. Y04AAS1 6742799 YP_002120689.1 CDS HY04AAS1_0019 NC_011126.1 18866 19663 R KEGG: aae:aq_1973 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(18866..19663) Hydrogenobaculum sp. Y04AAS1 6742800 YP_002120690.1 CDS prfB NC_011126.1 19653 20780 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(19653..20780) Hydrogenobaculum sp. Y04AAS1 6742801 YP_002120691.1 CDS HY04AAS1_0021 NC_011126.1 20782 20994 R TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: cth:Cthe_0738 copper ion binding protein; copper ion binding protein complement(20782..20994) Hydrogenobaculum sp. Y04AAS1 6742802 YP_002120692.1 CDS HY04AAS1_0022 NC_011126.1 21151 21885 R KEGG: sul:SYO3AOP1_0342 transposase; hypothetical protein complement(21151..21885) Hydrogenobaculum sp. Y04AAS1 6742803 YP_002120693.1 CDS HY04AAS1_0023 NC_011126.1 22003 23157 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 22003..23157 Hydrogenobaculum sp. Y04AAS1 6742804 YP_002120694.1 CDS HY04AAS1_0024 NC_011126.1 23147 23542 D PFAM: regulatory protein MerR; KEGG: aae:aq_702 transcriptional regulator (MerR family); MerR family transcriptional regulator 23147..23542 Hydrogenobaculum sp. Y04AAS1 6742805 YP_002120695.1 CDS HY04AAS1_0025 NC_011126.1 23571 23864 R PFAM: Cupin 2 conserved barrel domain protein; KEGG: sul:SYO3AOP1_0812 cupin 2 conserved barrel domain protein; Cupin 2 conserved barrel domain-containing protein complement(23571..23864) Hydrogenobaculum sp. Y04AAS1 6742806 YP_002120696.1 CDS HY04AAS1_0026 NC_011126.1 23857 25242 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: aae:aq_607 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; UDP-N-acetylglucosamine pyrophosphorylase complement(23857..25242) Hydrogenobaculum sp. Y04AAS1 6742807 YP_002120697.1 CDS HY04AAS1_0027 NC_011126.1 25252 26154 R PFAM: tRNA synthetase class II (D K and N); KEGG: aae:aq_763 lysyl-tRNA synthetase (genX) homolog; tRNA synthetase class II (D K and N) complement(25252..26154) Hydrogenobaculum sp. Y04AAS1 6742808 YP_002120698.1 CDS HY04AAS1_0028 NC_011126.1 26151 26801 R TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: aae:aq_831 trans-regulatory protein ExsB; exsB protein complement(26151..26801) Hydrogenobaculum sp. Y04AAS1 6742809 YP_002120699.1 CDS HY04AAS1_0029 NC_011126.1 26805 28427 R PFAM: chemotaxis sensory transducer; KEGG: tme:Tmel_1579 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(26805..28427) Hydrogenobaculum sp. Y04AAS1 6742810 YP_002120700.1 CDS HY04AAS1_0030 NC_011126.1 28417 29304 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2671 tetratricopeptide TPR_2; hypothetical protein complement(28417..29304) Hydrogenobaculum sp. Y04AAS1 6742811 YP_002120701.1 CDS HY04AAS1_0031 NC_011126.1 29387 29803 D KEGG: glo:Glov_0518 hypothetical protein; hypothetical protein 29387..29803 Hydrogenobaculum sp. Y04AAS1 6742812 YP_002120702.1 CDS HY04AAS1_0032 NC_011126.1 30182 31006 R KEGG: sul:SYO3AOP1_0346 carboxylesterase; carboxylesterase complement(30182..31006) Hydrogenobaculum sp. Y04AAS1 6742813 YP_002120703.1 CDS HY04AAS1_0033 NC_011126.1 31008 32369 R PFAM: aminotransferase class-III; KEGG: sul:SYO3AOP1_0347 aminotransferase class-III; class III aminotransferase complement(31008..32369) Hydrogenobaculum sp. Y04AAS1 6742814 YP_002120704.1 CDS HY04AAS1_0034 NC_011126.1 32317 32946 R KEGG: sul:SYO3AOP1_0348 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(32317..32946) Hydrogenobaculum sp. Y04AAS1 6742815 YP_002120705.1 CDS HY04AAS1_0035 NC_011126.1 33006 33512 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sul:SYO3AOP1_1306 redoxin domain protein; Redoxin domain-containing protein complement(33006..33512) Hydrogenobaculum sp. Y04AAS1 6742816 YP_002120706.1 CDS HY04AAS1_0036 NC_011126.1 33590 34489 R PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: aae:aq_1628 DNA polymerase I 3'-5' exo domain; 5'-3' exonuclease complement(33590..34489) Hydrogenobaculum sp. Y04AAS1 6742817 YP_002120707.1 CDS HY04AAS1_0037 NC_011126.1 34490 34984 R PFAM: protein of unknown function DUF151; KEGG: aae:aq_283 hypothetical protein; hypothetical protein complement(34490..34984) Hydrogenobaculum sp. Y04AAS1 6742818 YP_002120708.1 CDS HY04AAS1_0038 NC_011126.1 35103 35372 R hypothetical protein complement(35103..35372) Hydrogenobaculum sp. Y04AAS1 6742819 YP_002120709.1 CDS HY04AAS1_0039 NC_011126.1 35376 35600 R KEGG: aae:aq_1171a ferredoxin; ferredoxin complement(35376..35600) Hydrogenobaculum sp. Y04AAS1 6742820 YP_002120710.1 CDS HY04AAS1_0040 NC_011126.1 35611 36291 R TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: aae:aq_1169 pyruvate ferredoxin oxidoreductase, gamma subunit; pyruvate/ketoisovalerate oxidoreductase subunit gamma complement(35611..36291) Hydrogenobaculum sp. Y04AAS1 6742821 YP_002120711.1 CDS HY04AAS1_0041 NC_011126.1 36303 37169 R PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: aae:aq_1168 pyruvate ferredoxin oxidoreductase, beta subunit; thiamine pyrophosphate TPP binding domain-containing protein complement(36303..37169) Hydrogenobaculum sp. Y04AAS1 6742822 YP_002120712.1 CDS HY04AAS1_0042 NC_011126.1 37200 38369 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aae:aq_1167 pyruvate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(37200..38369) Hydrogenobaculum sp. Y04AAS1 6742823 YP_002120713.1 CDS HY04AAS1_0043 NC_011126.1 38385 39098 R PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; KEGG: aae:aq_1166 hypothetical protein; CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit complement(38385..39098) Hydrogenobaculum sp. Y04AAS1 6742824 YP_002120714.1 CDS HY04AAS1_0044 NC_011126.1 39298 40050 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: aae:aq_671 hydrogenase expression/formation protein B; hydrogenase accessory protein HypB complement(39298..40050) Hydrogenobaculum sp. Y04AAS1 6742825 YP_002120715.1 CDS HY04AAS1_0045 NC_011126.1 40043 40432 R PFAM: HupH hydrogenase expression protein; KEGG: aae:aq_669 hypothetical protein; HupH hydrogenase expression protein complement(40043..40432) Hydrogenobaculum sp. Y04AAS1 6742826 YP_002120716.1 CDS HY04AAS1_0046 NC_011126.1 40426 42636 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: aae:aq_672 transcriptional regulatory protein HypF; (NiFe) hydrogenase maturation protein HypF complement(40426..42636) Hydrogenobaculum sp. Y04AAS1 6742827 YP_002120717.1 CDS HY04AAS1_0047 NC_011126.1 42633 42977 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: aae:aq_1021 hydrogenase accessory protein HypA; hydrogenase nickel insertion protein HypA complement(42633..42977) Hydrogenobaculum sp. Y04AAS1 6742828 YP_002120718.1 CDS HY04AAS1_0048 NC_011126.1 42979 43965 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: aae:aq_1019 hydrogenase expression/formation protein; hydrogenase expression/formation protein HypE complement(42979..43965) Hydrogenobaculum sp. Y04AAS1 6742829 YP_002120719.1 CDS HY04AAS1_0049 NC_011126.1 43956 45050 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: aae:aq_1157 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(43956..45050) Hydrogenobaculum sp. Y04AAS1 6742830 YP_002120720.1 CDS HY04AAS1_0050 NC_011126.1 45028 45267 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: hhe:HH0324 hydrogenase isoenzyme formation protein HypC; hydrogenase assembly chaperone hypC/hupF complement(45028..45267) Hydrogenobaculum sp. Y04AAS1 6742831 YP_002120721.1 CDS HY04AAS1_0051 NC_011126.1 45277 45777 R TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: aae:aq_667 HupD hydrogenase related function; hydrogenase maturation protease complement(45277..45777) Hydrogenobaculum sp. Y04AAS1 6742832 YP_002120722.1 CDS HY04AAS1_0052 NC_011126.1 45774 46469 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: aae:aq_665 Ni/Fe hydrogenase B-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(45774..46469) Hydrogenobaculum sp. Y04AAS1 6742833 YP_002120723.1 CDS HY04AAS1_0053 NC_011126.1 46462 48363 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: aae:aq_662 hydrogenase large chain; nickel-dependent hydrogenase large subunit complement(46462..48363) Hydrogenobaculum sp. Y04AAS1 6742834 YP_002120724.1 CDS HY04AAS1_0054 NC_011126.1 48367 49437 R KEGG: aae:aq_660 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA complement(48367..49437) Hydrogenobaculum sp. Y04AAS1 6742835 YP_002120725.1 CDS HY04AAS1_0055 NC_011126.1 49700 51844 D PFAM: chemotaxis sensory transducer; KEGG: cbk:CLL_A1972 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 49700..51844 Hydrogenobaculum sp. Y04AAS1 6742836 YP_002120726.1 CDS HY04AAS1_0056 NC_011126.1 51854 53233 D KEGG: aae:aq_1862 hypothetical protein; hypothetical protein 51854..53233 Hydrogenobaculum sp. Y04AAS1 6742837 YP_002120727.1 CDS HY04AAS1_0057 NC_011126.1 53236 53766 R KEGG: sul:SYO3AOP1_0629 hypothetical protein; hypothetical protein complement(53236..53766) Hydrogenobaculum sp. Y04AAS1 6742838 YP_002120728.1 CDS HY04AAS1_0058 NC_011126.1 53808 54536 D KEGG: aae:aq_1776 protein; hypothetical protein 53808..54536 Hydrogenobaculum sp. Y04AAS1 6742839 YP_002120729.1 CDS HY04AAS1_0059 NC_011126.1 54665 56569 R PFAM: protein of unknown function DUF255; KEGG: sul:SYO3AOP1_0787 protein of unknown function DUF255; hypothetical protein complement(54665..56569) Hydrogenobaculum sp. Y04AAS1 6742841 YP_002120730.1 CDS HY04AAS1_0060 NC_011126.1 56614 57534 R PFAM: phosphoesterase DHHA1; KEGG: sul:SYO3AOP1_0354 phosphoesterase DHHA1; phosphoesterase DHHA1 complement(56614..57534) Hydrogenobaculum sp. Y04AAS1 6742842 YP_002120731.1 CDS HY04AAS1_0061 NC_011126.1 57534 59111 R PFAM: RNA binding S1 domain protein; KEGG: aae:aq_1485 30S ribosomal protein S1; RNA binding S1 domain-containing protein complement(57534..59111) Hydrogenobaculum sp. Y04AAS1 6742843 YP_002120732.1 CDS HY04AAS1_0062 NC_011126.1 59219 59377 R hypothetical protein complement(59219..59377) Hydrogenobaculum sp. Y04AAS1 6742844 YP_002120733.1 CDS HY04AAS1_0063 NC_011126.1 59382 60137 R TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: aae:aq_342 MazG protein; MazG family protein complement(59382..60137) Hydrogenobaculum sp. Y04AAS1 6742845 YP_002120734.1 CDS HY04AAS1_0064 NC_011126.1 60800 61264 D KEGG: nis:NIS_0600 hypothetical protein; hypothetical protein 60800..61264 Hydrogenobaculum sp. Y04AAS1 6742847 YP_002120735.1 CDS HY04AAS1_0065 NC_011126.1 61362 62363 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 61362..62363 Hydrogenobaculum sp. Y04AAS1 6742848 YP_002120736.1 CDS HY04AAS1_0066 NC_011126.1 62360 62983 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aae:aq_1244 hypothetical protein; CDP-alcohol phosphatidyltransferase 62360..62983 Hydrogenobaculum sp. Y04AAS1 6742849 YP_002120737.1 CDS HY04AAS1_0067 NC_011126.1 62976 63644 D PFAM: bifunctional deaminase-reductase domain protein; KEGG: aae:aq_436 5-amino-6-(5-phosphoribosylamino)uracil reductase; 5-amino-6-(5-phosphoribosylamino)uracil reductase 62976..63644 Hydrogenobaculum sp. Y04AAS1 6742850 YP_002120738.1 CDS HY04AAS1_0068 NC_011126.1 63675 63932 D KEGG: sul:SYO3AOP1_1581 hypothetical protein; hypothetical protein 63675..63932 Hydrogenobaculum sp. Y04AAS1 6742851 YP_002120739.1 CDS HY04AAS1_0069 NC_011126.1 63929 64717 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 63929..64717 Hydrogenobaculum sp. Y04AAS1 6742852 YP_002120740.1 CDS HY04AAS1_0070 NC_011126.1 64714 65238 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: cte:CT0726 HNH endonuclease family protein; HNH endonuclease 64714..65238 Hydrogenobaculum sp. Y04AAS1 6742853 YP_002120741.1 CDS HY04AAS1_0071 NC_011126.1 65293 65484 D PFAM: ribosomal protein L28; KEGG: aae:aq_080 50S ribosomal protein L28; 50S ribosomal protein L28 65293..65484 Hydrogenobaculum sp. Y04AAS1 6742854 YP_002120742.1 CDS HY04AAS1_0072 NC_011126.1 65536 66447 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: aae:aq_135 NADH dehydrogenase (ubiquinone); NAD-dependent epimerase/dehydratase 65536..66447 Hydrogenobaculum sp. Y04AAS1 6742855 YP_002120743.1 CDS HY04AAS1_0073 NC_011126.1 66424 67596 R PFAM: phosphate-selective porin O and P; KEGG: aae:aq_1862 hypothetical protein; phosphate-selective porin O and P complement(66424..67596) Hydrogenobaculum sp. Y04AAS1 6742856 YP_002120744.1 CDS HY04AAS1_0074 NC_011126.1 67679 67942 R PFAM: nitrogen-fixing NifU domain protein; protein of unknown function DUF59; KEGG: sul:SYO3AOP1_0399 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(67679..67942) Hydrogenobaculum sp. Y04AAS1 6742857 YP_002120745.1 CDS HY04AAS1_0075 NC_011126.1 67957 68580 R PFAM: manganese and iron superoxide dismutase; KEGG: aae:aq_1499 superoxide dismutase (Fe/Mn family); Superoxide dismutase complement(67957..68580) Hydrogenobaculum sp. Y04AAS1 6742858 YP_002120746.1 CDS HY04AAS1_0076 NC_011126.1 68636 69223 R KEGG: aoe:Clos_2113 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A complement(68636..69223) Hydrogenobaculum sp. Y04AAS1 6742859 YP_002120747.1 CDS HY04AAS1_0077 NC_011126.1 69216 70184 R PFAM: Lytic transglycosylase catalytic; KEGG: aae:aq_1420 hypothetical protein; Lytic transglycosylase complement(69216..70184) Hydrogenobaculum sp. Y04AAS1 6742860 YP_002120748.1 CDS HY04AAS1_0078 NC_011126.1 70234 72216 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: aae:aq_1288 general secretion pathway protein D; general secretion pathway protein D complement(70234..72216) Hydrogenobaculum sp. Y04AAS1 6742861 YP_002120749.1 CDS HY04AAS1_0079 NC_011126.1 72431 72835 D Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase proenzyme 72431..72835 Hydrogenobaculum sp. Y04AAS1 6742862 YP_002120750.1 CDS HY04AAS1_0080 NC_011126.1 72829 73830 D PFAM: SMF family protein; KEGG: aae:aq_1191 hypothetical protein; SMF family protein 72829..73830 Hydrogenobaculum sp. Y04AAS1 6742863 YP_002120751.1 CDS HY04AAS1_0081 NC_011126.1 73823 74482 D PFAM: protein of unknown function DUF558; KEGG: aae:aq_165 hypothetical protein; hypothetical protein 73823..74482 Hydrogenobaculum sp. Y04AAS1 6742864 YP_002120752.1 CDS HY04AAS1_0082 NC_011126.1 74519 76174 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpe:Tpen_1456 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 74519..76174 Hydrogenobaculum sp. Y04AAS1 6742865 YP_002120753.1 CDS HY04AAS1_0083 NC_011126.1 76181 77275 D KEGG: aae:aq_1569 protein; hypothetical protein 76181..77275 Hydrogenobaculum sp. Y04AAS1 6742866 YP_002120754.1 CDS HY04AAS1_0084 NC_011126.1 77396 78196 D KEGG: bur:Bcep18194_B0411 hypothetical protein; hypothetical protein 77396..78196 Hydrogenobaculum sp. Y04AAS1 6742867 YP_002120755.1 CDS HY04AAS1_0085 NC_011126.1 78216 79223 D KEGG: gox:GOX2657 sulfate-binding protein; sulfate-binding protein 78216..79223 Hydrogenobaculum sp. Y04AAS1 6742868 YP_002120756.1 CDS HY04AAS1_0086 NC_011126.1 79479 80222 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_2122 peptide transport system ATP-binding protein; ABC transporter 79479..80222 Hydrogenobaculum sp. Y04AAS1 6742869 YP_002120757.1 CDS HY04AAS1_0087 NC_011126.1 80215 81468 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aae:aq_2120 hemolysin homolog protein; CBS domain containing protein 80215..81468 Hydrogenobaculum sp. Y04AAS1 6742870 YP_002120758.1 CDS HY04AAS1_0088 NC_011126.1 81425 82123 D KEGG: aae:aq_2059 hypothetical protein; hypothetical protein 81425..82123 Hydrogenobaculum sp. Y04AAS1 6742871 YP_002120759.1 CDS HY04AAS1_0089 NC_011126.1 82156 84036 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sul:SYO3AOP1_1587 acetate/CoA ligase; acetate/CoA ligase 82156..84036 Hydrogenobaculum sp. Y04AAS1 6742872 YP_002120760.1 CDS purH NC_011126.1 84037 85557 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 84037..85557 Hydrogenobaculum sp. Y04AAS1 6742873 YP_002120761.1 CDS HY04AAS1_0091 NC_011126.1 85619 86767 D PFAM: 2-nitropropane dioxygenase NPD; KEGG: sul:SYO3AOP1_0405 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase NPD 85619..86767 Hydrogenobaculum sp. Y04AAS1 6742874 YP_002120762.1 CDS HY04AAS1_0092 NC_011126.1 86768 87100 D KEGG: aae:aq_2134 protein; hypothetical protein 86768..87100 Hydrogenobaculum sp. Y04AAS1 6742875 YP_002120763.1 CDS HY04AAS1_0093 NC_011126.1 87097 87378 D hypothetical protein 87097..87378 Hydrogenobaculum sp. Y04AAS1 6742876 YP_002120764.1 CDS HY04AAS1_0094 NC_011126.1 87375 87773 D KEGG: aae:aq_125 protein; hypothetical protein 87375..87773 Hydrogenobaculum sp. Y04AAS1 6742877 YP_002120765.1 CDS HY04AAS1_0095 NC_011126.1 87770 88906 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 87770..88906 Hydrogenobaculum sp. Y04AAS1 6742878 YP_002120766.1 CDS HY04AAS1_0096 NC_011126.1 89036 90628 D TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: sul:SYO3AOP1_1718 transposase, IS605 OrfB family; transposase, IS605 OrfB family 89036..90628 Hydrogenobaculum sp. Y04AAS1 6742879 YP_002120767.1 CDS HY04AAS1_0097 NC_011126.1 90661 91845 D TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; KEGG: sul:SYO3AOP1_1578 phosphoribosylglycinamide formyltransferase 2; phosphoribosylglycinamide formyltransferase 2 90661..91845 Hydrogenobaculum sp. Y04AAS1 6742880 YP_002120768.1 CDS HY04AAS1_0098 NC_011126.1 91855 93654 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 91855..93654 Hydrogenobaculum sp. Y04AAS1 6742881 YP_002120769.1 CDS HY04AAS1_0099 NC_011126.1 93651 94748 D KEGG: aae:aq_454 lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 93651..94748 Hydrogenobaculum sp. Y04AAS1 6742882 YP_002120770.1 CDS HY04AAS1_0100 NC_011126.1 94906 95247 D KEGG: aae:aq_087 hypothetical protein; hypothetical protein 94906..95247 Hydrogenobaculum sp. Y04AAS1 6742883 YP_002120771.1 CDS HY04AAS1_0101 NC_011126.1 95259 95582 D KEGG: aae:aq_088 hypothetical protein; hypothetical protein 95259..95582 Hydrogenobaculum sp. Y04AAS1 6742884 YP_002120772.1 CDS HY04AAS1_0102 NC_011126.1 95641 96027 D PFAM: Sterol-binding domain protein; KEGG: aae:aq_090 hypothetical protein; Sterol-binding domain-containing protein 95641..96027 Hydrogenobaculum sp. Y04AAS1 6742885 YP_002120773.1 CDS HY04AAS1_0103 NC_011126.1 96036 97595 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: PAS domain containing protein; AAA ATPase; KEGG: aae:aq_091m AAA family ATPase; PAS modulated sigma54 specific transcriptional regulator, Fis family 96036..97595 Hydrogenobaculum sp. Y04AAS1 6742886 YP_002120774.1 CDS HY04AAS1_0104 NC_011126.1 97733 98800 R KEGG: aae:aq_1427 lipid A disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(97733..98800) Hydrogenobaculum sp. Y04AAS1 6742888 YP_002120775.1 CDS HY04AAS1_0105 NC_011126.1 98793 99194 R hypothetical protein complement(98793..99194) Hydrogenobaculum sp. Y04AAS1 6742889 YP_002120776.1 CDS HY04AAS1_0106 NC_011126.1 99225 100184 D PFAM: sodium/calcium exchanger membrane region; KEGG: sul:SYO3AOP1_1150 sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane protein 99225..100184 Hydrogenobaculum sp. Y04AAS1 6742890 YP_002120777.1 CDS HY04AAS1_0107 NC_011126.1 100181 100489 D PFAM: histone family protein DNA-binding protein; KEGG: sul:SYO3AOP1_1244 histone family protein DNA-binding protein; histone family protein DNA-binding protein 100181..100489 Hydrogenobaculum sp. Y04AAS1 6742891 YP_002120778.1 CDS HY04AAS1_0108 NC_011126.1 100611 101108 D KEGG: aae:aq_1434 pilin; pilin 100611..101108 Hydrogenobaculum sp. Y04AAS1 6742893 YP_002120779.1 CDS HY04AAS1_0109 NC_011126.1 101177 101467 D PFAM: ribosomal protein L21; KEGG: tte:TTE0913 50S ribosomal protein L21; 50S ribosomal protein L21 101177..101467 Hydrogenobaculum sp. Y04AAS1 6742894 YP_002120780.1 CDS rpmA NC_011126.1 101471 101734 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 101471..101734 Hydrogenobaculum sp. Y04AAS1 6742895 YP_002120781.1 CDS HY04AAS1_0111 NC_011126.1 101727 102344 D PFAM: regulatory protein TetR; KEGG: aae:aq_2185 hypothetical protein; TetR family transcriptional regulator 101727..102344 Hydrogenobaculum sp. Y04AAS1 6742896 YP_002120782.1 CDS HY04AAS1_0112 NC_011126.1 102331 104379 D PFAM: glycoside hydrolase family 57; KEGG: cau:Caur_1163 glycoside hydrolase family 57; glycoside hydrolase family 57 102331..104379 Hydrogenobaculum sp. Y04AAS1 6742897 YP_002120783.1 CDS HY04AAS1_0113 NC_011126.1 104394 105593 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 104394..105593 Hydrogenobaculum sp. Y04AAS1 6742898 YP_002120784.1 CDS HY04AAS1_0114 NC_011126.1 105596 105910 R KEGG: aae:aq_1426 protein; hypothetical protein complement(105596..105910) Hydrogenobaculum sp. Y04AAS1 6742899 YP_002120785.1 CDS HY04AAS1_0115 NC_011126.1 106092 106370 D TIGRFAM: MoaD family protein; PFAM: thiamineS protein; KEGG: sul:SYO3AOP1_0808 MoaD family protein; MoaD family protein 106092..106370 Hydrogenobaculum sp. Y04AAS1 6742900 YP_002120786.1 CDS miaA NC_011126.1 106339 107235 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(106339..107235) Hydrogenobaculum sp. Y04AAS1 6742901 YP_002120787.1 CDS HY04AAS1_0117 NC_011126.1 107226 107627 R PFAM: protein of unknown function UPF0079; KEGG: sul:SYO3AOP1_0033 protein of unknown function UPF0079; hypothetical protein complement(107226..107627) Hydrogenobaculum sp. Y04AAS1 6742902 YP_002120788.1 CDS HY04AAS1_0118 NC_011126.1 107800 108723 R PFAM: MCP methyltransferase CheR-type; KEGG: tex:Teth514_1609 protein-glutamate O-methyltransferase; MCP methyltransferase, CheR-type complement(107800..108723) Hydrogenobaculum sp. Y04AAS1 6742904 YP_002120789.1 CDS HY04AAS1_0119 NC_011126.1 108699 109457 R KEGG: aae:aq_1489 tRNA guanine-N1 methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(108699..109457) Hydrogenobaculum sp. Y04AAS1 6742905 YP_002120790.1 CDS HY04AAS1_0120 NC_011126.1 109450 109668 R KEGG: sul:SYO3AOP1_1583 ATP synthase protein I; ATP synthase protein I complement(109450..109668) Hydrogenobaculum sp. Y04AAS1 6742906 YP_002120791.1 CDS HY04AAS1_0121 NC_011126.1 109665 110735 R PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: aae:aq_951 chorismate mutase/prephenate dehydratase; prephenate dehydratase complement(109665..110735) Hydrogenobaculum sp. Y04AAS1 6742907 YP_002120792.1 CDS HY04AAS1_0122 NC_011126.1 110732 110992 R KEGG: aae:aq_1201 protein; hypothetical protein complement(110732..110992) Hydrogenobaculum sp. Y04AAS1 6742908 YP_002120793.1 CDS HY04AAS1_0123 NC_011126.1 111058 111939 D TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: aae:aq_1602 protein-export membrane protein SecF; protein-export membrane protein SecF 111058..111939 Hydrogenobaculum sp. Y04AAS1 6742909 YP_002120794.1 CDS HY04AAS1_0124 NC_011126.1 112003 112119 D hypothetical protein 112003..112119 Hydrogenobaculum sp. Y04AAS1 6742910 YP_002120795.1 CDS HY04AAS1_0125 NC_011126.1 112247 113533 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_2186 sulfide-quinone reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 112247..113533 Hydrogenobaculum sp. Y04AAS1 6742911 YP_002120796.1 CDS HY04AAS1_0126 NC_011126.1 113585 113743 D hypothetical protein 113585..113743 Hydrogenobaculum sp. Y04AAS1 6742912 YP_002120797.1 CDS HY04AAS1_0127 NC_011126.1 113775 114533 R PFAM: protein of unknown function DUF81; KEGG: tbd:Tbd_2380 hypothetical protein; hypothetical protein complement(113775..114533) Hydrogenobaculum sp. Y04AAS1 6742913 YP_002120798.1 CDS HY04AAS1_0128 NC_011126.1 114601 115203 R PFAM: thymidylate kinase; KEGG: aae:aq_969 thymidylate kinase; dTMP kinase complement(114601..115203) Hydrogenobaculum sp. Y04AAS1 6742914 YP_002120799.1 CDS HY04AAS1_0129 NC_011126.1 115203 116660 R KEGG: aae:aq_1472 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(115203..116660) Hydrogenobaculum sp. Y04AAS1 6742915 YP_002120800.1 CDS HY04AAS1_0130 NC_011126.1 116697 117299 R PFAM: protein of unknown function DUF374; KEGG: fnu:FN1269 hypothetical lipoprotein; hypothetical protein complement(116697..117299) Hydrogenobaculum sp. Y04AAS1 6742916 YP_002120801.1 CDS HY04AAS1_0131 NC_011126.1 117348 118757 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: aae:aq_111 glutamine synthetase; glutamine synthetase, type I complement(117348..118757) Hydrogenobaculum sp. Y04AAS1 6742917 YP_002120802.1 CDS HY04AAS1_0132 NC_011126.1 118794 119132 R PFAM: nitrogen regulatory protein P-II; KEGG: aae:aq_109 nitrogen regulatory PII protein; nitrogen regulatory protein P-II complement(118794..119132) Hydrogenobaculum sp. Y04AAS1 6742918 YP_002120803.1 CDS HY04AAS1_0133 NC_011126.1 119266 120174 R TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin binding domain; molybdopterin cofactor biosynthesis MoaC region; KEGG: sul:SYO3AOP1_1766 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C complement(119266..120174) Hydrogenobaculum sp. Y04AAS1 6742919 YP_002120804.1 CDS HY04AAS1_0134 NC_011126.1 120171 121013 R PFAM: purine phosphorylase family 2; KEGG: aae:aq_568 probable 5'-methylthioadenosine phosphorylase; purine phosphorylase family 2 complement(120171..121013) Hydrogenobaculum sp. Y04AAS1 6742920 YP_002120805.1 CDS HY04AAS1_0135 NC_011126.1 121047 121799 R PFAM: polysaccharide deacetylase; KEGG: cbf:CLI_2851 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(121047..121799) Hydrogenobaculum sp. Y04AAS1 6742921 YP_002120806.1 CDS HY04AAS1_0136 NC_011126.1 121866 122702 R KEGG: sul:SYO3AOP1_0421 hypothetical protein; hypothetical protein complement(121866..122702) Hydrogenobaculum sp. Y04AAS1 6742922 YP_002120807.1 CDS HY04AAS1_0137 NC_011126.1 122695 123561 R KEGG: aae:aq_521 D-alanine:D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; D-alanine/D-alanine ligase complement(122695..123561) Hydrogenobaculum sp. Y04AAS1 6742923 YP_002120808.1 CDS HY04AAS1_0138 NC_011126.1 123552 124400 R KEGG: aae:aq_520 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(123552..124400) Hydrogenobaculum sp. Y04AAS1 6742924 YP_002120809.1 CDS HY04AAS1_0139 NC_011126.1 124472 125518 D KEGG: nis:NIS_0136 hypothetical protein; TIGRFAM: PAS sensor protein; PFAM: GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor protein 124472..125518 Hydrogenobaculum sp. Y04AAS1 6742925 YP_002120810.1 CDS HY04AAS1_0140 NC_011126.1 125515 126105 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); diguanylate cyclase 125515..126105 Hydrogenobaculum sp. Y04AAS1 6742926 YP_002120811.1 CDS HY04AAS1_0141 NC_011126.1 126128 126970 D PFAM: EAL domain protein; KEGG: nmu:Nmul_A1138 response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate phosphodiesterase 126128..126970 Hydrogenobaculum sp. Y04AAS1 6742927 YP_002120812.1 CDS rpsO NC_011126.1 127113 127388 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 127113..127388 Hydrogenobaculum sp. Y04AAS1 6742929 YP_002120813.1 CDS HY04AAS1_0143 NC_011126.1 127391 129502 D KEGG: aae:aq_221 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 127391..129502 Hydrogenobaculum sp. Y04AAS1 6742930 YP_002120814.1 CDS HY04AAS1_0144 NC_011126.1 129506 129940 D KEGG: aae:aq_220 deoxyuridine 5'triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 129506..129940 Hydrogenobaculum sp. Y04AAS1 6742931 YP_002120815.1 CDS HY04AAS1_0145 NC_011126.1 129937 130950 D KEGG: aae:aq_196 phosphoribosylanthranilate transferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase 129937..130950 Hydrogenobaculum sp. Y04AAS1 6742932 YP_002120816.1 CDS HY04AAS1_0146 NC_011126.1 130947 131684 D PFAM: protein of unknown function DUF178; KEGG: aae:aq_1070 hypothetical protein; hypothetical protein 130947..131684 Hydrogenobaculum sp. Y04AAS1 6742933 YP_002120817.1 CDS clpX NC_011126.1 131681 132880 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(131681..132880) Hydrogenobaculum sp. Y04AAS1 6742934 YP_002120818.1 CDS HY04AAS1_0148 NC_011126.1 132882 133499 R KEGG: aae:aq_1339 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(132882..133499) Hydrogenobaculum sp. Y04AAS1 6742935 YP_002120819.1 CDS HY04AAS1_0149 NC_011126.1 133486 134856 R PFAM: trigger factor domain; KEGG: aae:aq_1340 trigger factor; trigger factor domain complement(133486..134856) Hydrogenobaculum sp. Y04AAS1 6742936 YP_002120820.1 CDS HY04AAS1_0150 NC_011126.1 135039 135419 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: pab:PAB0825 translation initiation inhibitor; endoribonuclease L-PSP complement(135039..135419) Hydrogenobaculum sp. Y04AAS1 6742938 YP_002120821.1 CDS HY04AAS1_0151 NC_011126.1 135416 136501 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(135416..136501) Hydrogenobaculum sp. Y04AAS1 6742939 YP_002120822.1 CDS HY04AAS1_0152 NC_011126.1 136690 138462 R PFAM: ABC transporter; SbmABacA family protein; ABC transporter; SMART: AAA ATPase; KEGG: pfo:PflO1_0822 ABC transporter-like; ABC transporter complement(136690..138462) Hydrogenobaculum sp. Y04AAS1 6742941 YP_002120823.1 CDS HY04AAS1_0153 NC_011126.1 138475 139182 R TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: aae:aq_833 flagellar protein FlgA; flagella basal body P-ring formation protein FlgA complement(138475..139182) Hydrogenobaculum sp. Y04AAS1 6742942 YP_002120824.1 CDS HY04AAS1_0154 NC_011126.1 139182 139973 R TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: aae:aq_834 flagellar hook basal-body protein FlgG; flagellar basal-body rod protein FlgG complement(139182..139973) Hydrogenobaculum sp. Y04AAS1 6742943 YP_002120825.1 CDS HY04AAS1_0155 NC_011126.1 140030 141325 R KEGG: sml:Smlt1009 glycine-rich autotransporter protein; hypothetical protein complement(140030..141325) Hydrogenobaculum sp. Y04AAS1 6742944 YP_002120826.1 CDS HY04AAS1_0156 NC_011126.1 141337 142248 R KEGG: aae:aq_1436 protein; hypothetical protein complement(141337..142248) Hydrogenobaculum sp. Y04AAS1 6742945 YP_002120827.1 CDS HY04AAS1_0157 NC_011126.1 142232 142579 R KEGG: aae:aq_1435 pilin; pilin complement(142232..142579) Hydrogenobaculum sp. Y04AAS1 6742946 YP_002120828.1 CDS HY04AAS1_0158 NC_011126.1 142609 143985 R TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: aae:aq_1372 argininosuccinate lyase; argininosuccinate lyase complement(142609..143985) Hydrogenobaculum sp. Y04AAS1 6742947 YP_002120829.1 CDS HY04AAS1_0159 NC_011126.1 143982 144755 R PFAM: cytochrome c assembly protein; KEGG: aae:aq_055 cytochrome c biogenesis protein; cytochrome c assembly protein complement(143982..144755) Hydrogenobaculum sp. Y04AAS1 6742948 YP_002120830.1 CDS HY04AAS1_0160 NC_011126.1 144752 145957 R KEGG: aae:aq_849 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG complement(144752..145957) Hydrogenobaculum sp. Y04AAS1 6742949 YP_002120831.1 CDS HY04AAS1_0161 NC_011126.1 145959 147077 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(145959..147077) Hydrogenobaculum sp. Y04AAS1 6742950 YP_002120832.1 CDS HY04AAS1_0162 NC_011126.1 147070 148029 R catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate; bifunctional phosphoglucose/phosphomannose isomerase complement(147070..148029) Hydrogenobaculum sp. Y04AAS1 6742951 YP_002120833.1 CDS HY04AAS1_0163 NC_011126.1 148114 148395 D PFAM: acylphosphatase; KEGG: sso:SSO0887 acylphosphatase; acylphosphatase 148114..148395 Hydrogenobaculum sp. Y04AAS1 6742952 YP_002120834.1 CDS HY04AAS1_0164 NC_011126.1 148358 149419 D PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: aae:aq_652 lipoprotein; Peptidase M23 148358..149419 Hydrogenobaculum sp. Y04AAS1 6742953 YP_002120835.1 CDS HY04AAS1_0165 NC_011126.1 149458 149979 D PFAM: Inorganic pyrophosphatase; KEGG: aae:aq_1547 inorganic pyrophosphatase; Inorganic diphosphatase 149458..149979 Hydrogenobaculum sp. Y04AAS1 6742954 YP_002120836.1 CDS HY04AAS1_0166 NC_011126.1 149976 150935 D KEGG: aae:aq_1546 polysialic acid capsule expression protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 149976..150935 Hydrogenobaculum sp. Y04AAS1 6742955 YP_002120837.1 CDS HY04AAS1_0167 NC_011126.1 150932 151576 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aae:aq_2154 phosphotidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase 150932..151576 Hydrogenobaculum sp. Y04AAS1 6742956 YP_002120838.1 CDS HY04AAS1_0168 NC_011126.1 151581 153419 D KEGG: aae:aq_1185 hypothetical protein; hypothetical protein 151581..153419 Hydrogenobaculum sp. Y04AAS1 6742957 YP_002120839.1 CDS HY04AAS1_0169 NC_011126.1 153422 153796 D KEGG: aae:aq_1184 flagellar basal body rod protein FlgB; flagellar basal body rod protein FlgB 153422..153796 Hydrogenobaculum sp. Y04AAS1 6742958 YP_002120840.1 CDS HY04AAS1_0170 NC_011126.1 153811 154221 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: aae:aq_1183 flagellar biosynthesis FlgC; flagellar basal-body rod protein FlgC 153811..154221 Hydrogenobaculum sp. Y04AAS1 6742959 YP_002120841.1 CDS HY04AAS1_0171 NC_011126.1 154224 154529 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: aae:aq_1182a flagellar hook-basal body protein; flagellar hook-basal body complex subunit FliE 154224..154529 Hydrogenobaculum sp. Y04AAS1 6742960 YP_002120842.1 CDS HY04AAS1_0172 NC_011126.1 154537 156039 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: aae:aq_1182 Flagellar M-ring protein; flagellar M-ring protein FliF 154537..156039 Hydrogenobaculum sp. Y04AAS1 6742961 YP_002120843.1 CDS HY04AAS1_0173 NC_011126.1 156052 157017 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sul:SYO3AOP1_1659 flagellar motor switch protein FliM; flagellar motor switch protein FliM 156052..157017 Hydrogenobaculum sp. Y04AAS1 6742962 YP_002120844.1 CDS HY04AAS1_0174 NC_011126.1 157017 157466 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: cno:NT01CX_1869 flagellar motor switch protein; flagellar motor switch protein FliN 157017..157466 Hydrogenobaculum sp. Y04AAS1 6742963 YP_002120845.1 CDS HY04AAS1_0175 NC_011126.1 157467 158387 R TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: mtp:Mthe_0686 1-phosphofructokinase; 1-phosphofructokinase complement(157467..158387) Hydrogenobaculum sp. Y04AAS1 6742964 YP_002120846.1 CDS HY04AAS1_0176 NC_011126.1 158384 159286 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: nis:NIS_0927 fructose-bisphosphate aldolase, class I; aldolase complement(158384..159286) Hydrogenobaculum sp. Y04AAS1 6742965 YP_002120847.1 CDS HY04AAS1_0177 NC_011126.1 159279 159836 R KEGG: aae:aq_1534 protein; hypothetical protein complement(159279..159836) Hydrogenobaculum sp. Y04AAS1 6742966 YP_002120848.1 CDS HY04AAS1_0178 NC_011126.1 159833 160750 R PFAM: Mammalian cell entry related domain protein; KEGG: aae:aq_1533 ABC transport system substrate-bindin protein; Mammalian cell entry related domain-containing protein complement(159833..160750) Hydrogenobaculum sp. Y04AAS1 6742967 YP_002120849.1 CDS HY04AAS1_0179 NC_011126.1 160743 161477 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_1531 ABC transport system ATP-binding protein; ABC transporter complement(160743..161477) Hydrogenobaculum sp. Y04AAS1 6742968 YP_002120850.1 CDS HY04AAS1_0180 NC_011126.1 161474 162457 R PFAM: protein of unknown function DUF140; KEGG: aae:aq_1530 ABC transport system permease protein; hypothetical protein complement(161474..162457) Hydrogenobaculum sp. Y04AAS1 6742969 YP_002120851.1 CDS HY04AAS1_0181 NC_011126.1 162477 162947 D hypothetical protein 162477..162947 Hydrogenobaculum sp. Y04AAS1 6742970 YP_002120852.1 CDS HY04AAS1_0182 NC_011126.1 162944 163870 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: aae:aq_147 cobalamin synthesis related protein CobW; cobalamin synthesis protein P47K 162944..163870 Hydrogenobaculum sp. Y04AAS1 6742971 YP_002120853.1 CDS HY04AAS1_0183 NC_011126.1 163878 164294 D KEGG: ccv:CCV52592_2170 pyridoxal phosphate-dependent enzyme; hypothetical protein 163878..164294 Hydrogenobaculum sp. Y04AAS1 6742972 YP_002120854.1 CDS HY04AAS1_0184 NC_011126.1 164282 165169 R KEGG: tac:Ta1156 hypothetical membrane protein; hypothetical protein complement(164282..165169) Hydrogenobaculum sp. Y04AAS1 6742973 YP_002120855.1 CDS HY04AAS1_0185 NC_011126.1 165166 165864 R KEGG: sul:SYO3AOP1_0850 hypothetical protein; hypothetical protein complement(165166..165864) Hydrogenobaculum sp. Y04AAS1 6742974 YP_002120856.1 CDS HY04AAS1_0186 NC_011126.1 165861 166052 R TIGRFAM: DNA binding domain protein, excisionase family; transcriptional antiterminator, BglG complement(165861..166052) Hydrogenobaculum sp. Y04AAS1 6742975 YP_002120857.1 CDS HY04AAS1_0187 NC_011126.1 166140 166517 R KEGG: aae:aq_aa40 hypothetical protein; hypothetical protein complement(166140..166517) Hydrogenobaculum sp. Y04AAS1 6742976 YP_002120858.1 CDS HY04AAS1_0188 NC_011126.1 166537 167208 R TIGRFAM: transcriptional activator, Baf family; KEGG: ccv:CCV52592_0993 type III pantothenate kinase (pantothenic acid kinase)(PanK-III); Baf family transcriptional acitvator complement(166537..167208) Hydrogenobaculum sp. Y04AAS1 6742977 YP_002120859.1 CDS HY04AAS1_0189 NC_011126.1 167205 168674 R KEGG: aae:aq_2023 inosine monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(167205..168674) Hydrogenobaculum sp. Y04AAS1 6742978 YP_002120860.1 CDS HY04AAS1_0190 NC_011126.1 168775 168966 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: aae:aq_064b sec-independent protein translocase protein; twin-arginine translocation protein, TatA/E family subunit 168775..168966 Hydrogenobaculum sp. Y04AAS1 6742979 YP_002120861.1 CDS HY04AAS1_0191 NC_011126.1 169021 169209 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: aae:aq_064c sec-independent protein translocase protein; twin-arginine translocation protein, TatA/E family subunit 169021..169209 Hydrogenobaculum sp. Y04AAS1 6742980 YP_002120862.1 CDS HY04AAS1_0192 NC_011126.1 169212 169772 D KEGG: sul:SYO3AOP1_0929 chemotaxis phosphatase, CheZ; chemotaxis phosphatase, CheZ 169212..169772 Hydrogenobaculum sp. Y04AAS1 6742981 YP_002120863.1 CDS HY04AAS1_0193 NC_011126.1 169786 170169 D PFAM: response regulator receiver; KEGG: sul:SYO3AOP1_0930 response regulator receiver protein; response regulator receiver protein 169786..170169 Hydrogenobaculum sp. Y04AAS1 6742982 YP_002120864.1 CDS HY04AAS1_0194 NC_011126.1 170187 172055 D PFAM: chemotaxis sensory transducer; KEGG: sul:SYO3AOP1_0922 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 170187..172055 Hydrogenobaculum sp. Y04AAS1 6742983 YP_002120865.1 CDS HY04AAS1_0195 NC_011126.1 172077 172442 D KEGG: sul:SYO3AOP1_0923 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 172077..172442 Hydrogenobaculum sp. Y04AAS1 6742984 YP_002120866.1 CDS HY04AAS1_0196 NC_011126.1 172455 173495 D PFAM: response regulator receiver; CheW domain protein; KEGG: sul:SYO3AOP1_0924 response regulator receiver modulated chemotaxis protein CheW; response regulator receiver modulated chemotaxis protein CheW 172455..173495 Hydrogenobaculum sp. Y04AAS1 6742985 YP_002120867.1 CDS HY04AAS1_0197 NC_011126.1 173499 175562 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: sul:SYO3AOP1_0926 chemotaxis protein CheA; chemotaxis protein CheA 173499..175562 Hydrogenobaculum sp. Y04AAS1 6742986 YP_002120868.1 CDS HY04AAS1_0198 NC_011126.1 175669 176382 D TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: aae:aq_566 biotin [acetyl-CoA-carboxylase] ligase; biotin/acetyl-CoA-carboxylase ligase 175669..176382 Hydrogenobaculum sp. Y04AAS1 6742987 YP_002120869.1 CDS HY04AAS1_0199 NC_011126.1 176413 176925 D PFAM: outer membrane chaperone Skp (OmpH); KEGG: aae:aq_157 protein; outer membrane chaperone Skp 176413..176925 Hydrogenobaculum sp. Y04AAS1 6742988 YP_002120870.1 CDS HY04AAS1_0200 NC_011126.1 176922 177896 D TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: aae:aq_538 UDP-3-O-[3-hydroxymyristoyl] glucosamine N acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 176922..177896 Hydrogenobaculum sp. Y04AAS1 6742989 YP_002120871.1 CDS HY04AAS1_0201 NC_011126.1 177893 178954 R KEGG: aae:aq_359 protein; permease-like protein complement(177893..178954) Hydrogenobaculum sp. Y04AAS1 6742990 YP_002120872.1 CDS HY04AAS1_0202 NC_011126.1 178954 179805 R PFAM: protein of unknown function DUF114; KEGG: aae:aq_814 hypothetical protein; hypothetical protein complement(178954..179805) Hydrogenobaculum sp. Y04AAS1 6742991 YP_002120873.1 CDS HY04AAS1_0203 NC_011126.1 179835 180575 R KEGG: aae:aq_1526 DNA polymerase III delta' subunit; DNA polymerase III subunit delta' complement(179835..180575) Hydrogenobaculum sp. Y04AAS1 6742992 YP_002120874.1 CDS HY04AAS1_0204 NC_011126.1 180577 181521 R PFAM: aminodeoxychorismate lyase; KEGG: aae:aq_775 hypothetical protein; aminodeoxychorismate lyase complement(180577..181521) Hydrogenobaculum sp. Y04AAS1 6742993 YP_002120875.1 CDS HY04AAS1_0205 NC_011126.1 181505 181876 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: aae:aq_1498 Holliday junction resolvase; Holliday junction resolvase YqgF complement(181505..181876) Hydrogenobaculum sp. Y04AAS1 6742994 YP_002120876.1 CDS HY04AAS1_0206 NC_011126.1 181895 183418 R PFAM: protein of unknown function DUF1703; KEGG: sul:SYO3AOP1_0027 protein of unknown function DUF1703; hypothetical protein complement(181895..183418) Hydrogenobaculum sp. Y04AAS1 6742995 YP_002120877.1 CDS HY04AAS1_0207 NC_011126.1 183458 185776 R KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(183458..185776) Hydrogenobaculum sp. Y04AAS1 6742996 YP_002120878.1 CDS HY04AAS1_0208 NC_011126.1 185773 188616 R KEGG: sul:SYO3AOP1_0011 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(185773..188616) Hydrogenobaculum sp. Y04AAS1 6742997 YP_002120879.1 CDS HY04AAS1_0209 NC_011126.1 188690 190912 R PFAM: EAL domain protein; KEGG: nis:NIS_0196 signal transduction response regulator; diguanylate phosphodiesterase complement(188690..190912) Hydrogenobaculum sp. Y04AAS1 6742998 YP_002120880.1 CDS HY04AAS1_0210 NC_011126.1 191040 191273 D hypothetical protein 191040..191273 Hydrogenobaculum sp. Y04AAS1 6742999 YP_002120881.1 CDS HY04AAS1_0211 NC_011126.1 191242 191796 D KEGG: asu:Asuc_0762 lytic transglycosylase catalytic; hypothetical protein 191242..191796 Hydrogenobaculum sp. Y04AAS1 6743000 YP_002120882.1 CDS HY04AAS1_0212 NC_011126.1 191807 192931 D PFAM: cell cycle protein; KEGG: aae:aq_1139 cell division protein FtsW; cell cycle protein 191807..192931 Hydrogenobaculum sp. Y04AAS1 6743001 YP_002120883.1 CDS murG NC_011126.1 192913 193980 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 192913..193980 Hydrogenobaculum sp. Y04AAS1 6743002 YP_002120884.1 CDS HY04AAS1_0214 NC_011126.1 193977 195065 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: nis:NIS_0636 hypothetical protein; diguanylate cyclase 193977..195065 Hydrogenobaculum sp. Y04AAS1 6743003 YP_002120885.1 CDS HY04AAS1_0215 NC_011126.1 195107 195571 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aae:aq_574 NADH dehydrogenase I chain E; NADH-quinone oxidoreductase subunit E 195107..195571 Hydrogenobaculum sp. Y04AAS1 6743004 YP_002120886.1 CDS HY04AAS1_0216 NC_011126.1 195546 196823 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: aae:aq_573 NADH dehydrogenase I chain F; NADH dehydrogenase (quinone) 195546..196823 Hydrogenobaculum sp. Y04AAS1 6743005 YP_002120887.1 CDS HY04AAS1_0217 NC_011126.1 196839 198503 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 196839..198503 Hydrogenobaculum sp. Y04AAS1 6743006 YP_002120888.1 CDS tgt NC_011126.1 198514 199644 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 198514..199644 Hydrogenobaculum sp. Y04AAS1 6743007 YP_002120889.1 CDS HY04AAS1_0219 NC_011126.1 199661 199813 D hypothetical protein 199661..199813 Hydrogenobaculum sp. Y04AAS1 6743008 YP_002120890.1 CDS HY04AAS1_0220 NC_011126.1 199850 200503 R KEGG: aae:aq_021 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type I; PFAM: dehydroquinase class I; 3-dehydroquinate dehydratase, type I complement(199850..200503) Hydrogenobaculum sp. Y04AAS1 6743009 YP_002120891.1 CDS HY04AAS1_0221 NC_011126.1 200503 201660 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(200503..201660) Hydrogenobaculum sp. Y04AAS1 6743010 YP_002120892.1 CDS HY04AAS1_0222 NC_011126.1 201964 202929 R KEGG: bbt:BBta_1404 hypothetical protein; hypothetical protein complement(201964..202929) Hydrogenobaculum sp. Y04AAS1 6743011 YP_002120893.1 CDS HY04AAS1_0223 NC_011126.1 203362 203871 R KEGG: aae:aq_1660 hypothetical protein; hypothetical protein complement(203362..203871) Hydrogenobaculum sp. Y04AAS1 6743013 YP_002120894.1 CDS HY04AAS1_0224 NC_011126.1 204251 204667 R KEGG: sul:SYO3AOP1_1078 dinitrogenase iron-molybdenum cofactor biosynthesis protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein complement(204251..204667) Hydrogenobaculum sp. Y04AAS1 6743014 YP_002120895.1 CDS HY04AAS1_0225 NC_011126.1 204754 204981 R hypothetical protein complement(204754..204981) Hydrogenobaculum sp. Y04AAS1 6743015 YP_002120896.1 CDS HY04AAS1_0226 NC_011126.1 205357 205491 R hypothetical protein complement(205357..205491) Hydrogenobaculum sp. Y04AAS1 6743016 YP_002120897.1 CDS HY04AAS1_0227 NC_011126.1 205560 206144 R hypothetical protein complement(205560..206144) Hydrogenobaculum sp. Y04AAS1 6743017 YP_002120898.1 CDS HY04AAS1_0228 NC_011126.1 206156 206350 R hypothetical protein complement(206156..206350) Hydrogenobaculum sp. Y04AAS1 6743018 YP_002120899.1 CDS HY04AAS1_0229 NC_011126.1 206397 206975 R hypothetical protein complement(206397..206975) Hydrogenobaculum sp. Y04AAS1 6743019 YP_002120900.1 CDS HY04AAS1_0230 NC_011126.1 207147 208079 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: aae:aq_344 ADP-L-glycero-D-manno-heptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase 207147..208079 Hydrogenobaculum sp. Y04AAS1 6743020 YP_002120901.1 CDS HY04AAS1_0231 NC_011126.1 208076 209041 D TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aae:aq_1556 cysteine synthase, O-acetylserine (thiol) lyase B; cysteine synthase B 208076..209041 Hydrogenobaculum sp. Y04AAS1 6743021 YP_002120902.1 CDS HY04AAS1_0232 NC_011126.1 209043 209558 D PFAM: protein of unknown function DUF177; KEGG: aae:aq_1103 hypothetical protein; hypothetical protein 209043..209558 Hydrogenobaculum sp. Y04AAS1 6743022 YP_002120903.1 CDS rpmF NC_011126.1 209539 209721 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 209539..209721 Hydrogenobaculum sp. Y04AAS1 6743023 YP_002120904.1 CDS HY04AAS1_0234 NC_011126.1 209733 210752 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX 209733..210752 Hydrogenobaculum sp. Y04AAS1 6743024 YP_002120905.1 CDS HY04AAS1_0235 NC_011126.1 210752 211663 D KEGG: aae:aq_1099 3-oxoacyl-[acyl-carrier-protein] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 210752..211663 Hydrogenobaculum sp. Y04AAS1 6743025 YP_002120906.1 CDS HY04AAS1_0236 NC_011126.1 211665 212078 D KEGG: aae:aq_1356 protein; hypothetical protein 211665..212078 Hydrogenobaculum sp. Y04AAS1 6743026 YP_002120907.1 CDS HY04AAS1_0237 NC_011126.1 212146 212715 D PFAM: oxidoreductase molybdopterin binding; KEGG: aae:aq_979 hypothetical protein; oxidoreductase molybdopterin-binding protein 212146..212715 Hydrogenobaculum sp. Y04AAS1 6743027 YP_002120908.1 CDS HY04AAS1_0238 NC_011126.1 212718 213620 R PFAM: Ppx/GppA phosphatase; KEGG: aae:aq_891 exopolyphosphatase; Ppx/GppA phosphatase complement(212718..213620) Hydrogenobaculum sp. Y04AAS1 6743028 YP_002120909.1 CDS HY04AAS1_0239 NC_011126.1 213623 213838 R hypothetical protein complement(213623..213838) Hydrogenobaculum sp. Y04AAS1 6743029 YP_002120910.1 CDS HY04AAS1_0240 NC_011126.1 213835 214746 R PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tme:Tmel_0941 ATPase associated with various cellular activities, AAA_3; ATPase complement(213835..214746) Hydrogenobaculum sp. Y04AAS1 6743030 YP_002120911.1 CDS HY04AAS1_0241 NC_011126.1 214767 216689 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_563 hypothetical protein; diguanylate cyclase complement(214767..216689) Hydrogenobaculum sp. Y04AAS1 6743031 YP_002120912.1 CDS HY04AAS1_0242 NC_011126.1 216815 216907 R hypothetical protein complement(216815..216907) Hydrogenobaculum sp. Y04AAS1 6743032 YP_002120913.1 CDS HY04AAS1_0243 NC_011126.1 217001 217282 D KEGG: msy:MS53_0054 hypothetical protein; hypothetical protein 217001..217282 Hydrogenobaculum sp. Y04AAS1 6743033 YP_002120914.1 CDS HY04AAS1_0244 NC_011126.1 217272 217943 D KEGG: aae:aq_1478 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 217272..217943 Hydrogenobaculum sp. Y04AAS1 6743034 YP_002120915.1 CDS HY04AAS1_0245 NC_011126.1 218271 219350 R TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aae:aq_745 twitching motility protein PilT; twitching motility protein complement(218271..219350) Hydrogenobaculum sp. Y04AAS1 6743035 YP_002120916.1 CDS HY04AAS1_0246 NC_011126.1 219379 221061 R PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: aae:aq_1971 type IV pilus assembly protein TapB; type II secretion system protein E complement(219379..221061) Hydrogenobaculum sp. Y04AAS1 6743036 YP_002120917.1 CDS HY04AAS1_0249 NC_011126.1 221582 222085 R KEGG: aae:aq_544 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(221582..222085) Hydrogenobaculum sp. Y04AAS1 6743039 YP_002120918.1 CDS HY04AAS1_0250 NC_011126.1 222513 223730 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 222513..223730 Hydrogenobaculum sp. Y04AAS1 6743043 YP_002120919.1 CDS rpmG NC_011126.1 223741 223890 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 223741..223890 Hydrogenobaculum sp. Y04AAS1 6743044 YP_002120920.1 CDS HY04AAS1_0252 NC_011126.1 223990 224190 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: aae:aq_1930b preprotein translocase subunit SecE; preprotein translocase subunit SecE 223990..224190 Hydrogenobaculum sp. Y04AAS1 6743046 YP_002120921.1 CDS HY04AAS1_0253 NC_011126.1 224187 224924 D TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: aae:aq_1931 transcription antitermination protein NusG; NusG antitermination factor 224187..224924 Hydrogenobaculum sp. Y04AAS1 6743047 YP_002120922.1 CDS rplK NC_011126.1 224935 225372 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 224935..225372 Hydrogenobaculum sp. Y04AAS1 6743048 YP_002120923.1 CDS rplA NC_011126.1 225378 226103 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 225378..226103 Hydrogenobaculum sp. Y04AAS1 6743049 YP_002120924.1 CDS rplJ NC_011126.1 226117 226653 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 226117..226653 Hydrogenobaculum sp. Y04AAS1 6743050 YP_002120925.1 CDS rplL NC_011126.1 226680 227063 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 226680..227063 Hydrogenobaculum sp. Y04AAS1 6743051 YP_002120926.1 CDS rpoB NC_011126.1 227173 231585 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 227173..231585 Hydrogenobaculum sp. Y04AAS1 6743052 YP_002120927.1 CDS HY04AAS1_0259 NC_011126.1 231585 236276 D KEGG: aae:aq_1945 RNA polymerase beta prime chain; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 231585..236276 Hydrogenobaculum sp. Y04AAS1 6743053 YP_002120928.1 CDS rpsL NC_011126.1 236341 236748 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 236341..236748 Hydrogenobaculum sp. Y04AAS1 6743054 YP_002120929.1 CDS HY04AAS1_0261 NC_011126.1 236748 237230 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 236748..237230 Hydrogenobaculum sp. Y04AAS1 6743055 YP_002120930.1 CDS HY04AAS1_0262 NC_011126.1 237245 239323 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 237245..239323 Hydrogenobaculum sp. Y04AAS1 6743056 YP_002120931.1 CDS HY04AAS1_0263 NC_011126.1 239337 240554 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 239337..240554 Hydrogenobaculum sp. Y04AAS1 6743057 YP_002120932.1 CDS rpsJ NC_011126.1 240565 240879 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 240565..240879 Hydrogenobaculum sp. Y04AAS1 6743058 YP_002120933.1 CDS rplC NC_011126.1 240884 241582 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 240884..241582 Hydrogenobaculum sp. Y04AAS1 6743059 YP_002120934.1 CDS rplD NC_011126.1 241584 242186 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 241584..242186 Hydrogenobaculum sp. Y04AAS1 6743060 YP_002120935.1 CDS rplW NC_011126.1 242183 242482 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 242183..242482 Hydrogenobaculum sp. Y04AAS1 6743061 YP_002120936.1 CDS rplB NC_011126.1 242493 243359 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 242493..243359 Hydrogenobaculum sp. Y04AAS1 6743062 YP_002120937.1 CDS rpsS NC_011126.1 243359 243820 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 243359..243820 Hydrogenobaculum sp. Y04AAS1 6743063 YP_002120938.1 CDS HY04AAS1_0270 NC_011126.1 243830 244195 D TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: sul:SYO3AOP1_0286 ribosomal protein L22; 50S ribosomal protein L22 243830..244195 Hydrogenobaculum sp. Y04AAS1 6743064 YP_002120939.1 CDS HY04AAS1_0271 NC_011126.1 244195 244890 D KEGG: aae:aq_017 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 244195..244890 Hydrogenobaculum sp. Y04AAS1 6743065 YP_002120940.1 CDS rplP NC_011126.1 244895 245320 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 244895..245320 Hydrogenobaculum sp. Y04AAS1 6743066 YP_002120941.1 CDS HY04AAS1_0273 NC_011126.1 245317 245517 D PFAM: ribosomal protein L29; KEGG: ape:APE_0362a 50S ribosomal protein L29P; 50S ribosomal protein L29 245317..245517 Hydrogenobaculum sp. Y04AAS1 6743067 YP_002120942.1 CDS rpsQ NC_011126.1 245514 245792 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 245514..245792 Hydrogenobaculum sp. Y04AAS1 6743068 YP_002120943.1 CDS rplN NC_011126.1 245845 246210 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 245845..246210 Hydrogenobaculum sp. Y04AAS1 6743069 YP_002120944.1 CDS rplX NC_011126.1 246210 246566 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 246210..246566 Hydrogenobaculum sp. Y04AAS1 6743070 YP_002120945.1 CDS rplE NC_011126.1 246572 247135 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 246572..247135 Hydrogenobaculum sp. Y04AAS1 6743071 YP_002120946.1 CDS rpsN NC_011126.1 247145 247333 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 247145..247333 Hydrogenobaculum sp. Y04AAS1 6743072 YP_002120947.1 CDS HY04AAS1_0279 NC_011126.1 247345 247755 D PFAM: ribosomal protein S8; KEGG: aae:aq_1651 30S ribosomal protein S8; 30S ribosomal protein S8 247345..247755 Hydrogenobaculum sp. Y04AAS1 6743073 YP_002120948.1 CDS HY04AAS1_0280 NC_011126.1 247768 248313 D PFAM: ribosomal protein L6; KEGG: sul:SYO3AOP1_0276 ribosomal protein L6; 50S ribosomal protein L6 247768..248313 Hydrogenobaculum sp. Y04AAS1 6743074 YP_002120949.1 CDS HY04AAS1_0281 NC_011126.1 248325 248693 D PFAM: ribosomal protein L18P/L5E; KEGG: aae:aq_1648 50S ribosomal protein L18; 50S ribosomal protein L18P/L5E 248325..248693 Hydrogenobaculum sp. Y04AAS1 6743075 YP_002120950.1 CDS rpsE NC_011126.1 248703 249272 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 248703..249272 Hydrogenobaculum sp. Y04AAS1 6743076 YP_002120951.1 CDS rpmD NC_011126.1 249276 249455 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 249276..249455 Hydrogenobaculum sp. Y04AAS1 6743077 YP_002120952.1 CDS HY04AAS1_0284 NC_011126.1 249452 249910 D PFAM: ribosomal protein L15; KEGG: aae:aq_1642 50S ribosomal protein L15; 50S ribosomal protein L15 249452..249910 Hydrogenobaculum sp. Y04AAS1 6743078 YP_002120953.1 CDS secY NC_011126.1 249903 251195 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 249903..251195 Hydrogenobaculum sp. Y04AAS1 6743079 YP_002120954.1 CDS HY04AAS1_0286 NC_011126.1 251195 251830 D PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: sul:SYO3AOP1_0270 nucleoside-triphosphate--adenylate kinase; Nucleoside-triphosphate--adenylate kinase 251195..251830 Hydrogenobaculum sp. Y04AAS1 6743080 YP_002120955.1 CDS HY04AAS1_0287 NC_011126.1 251827 252600 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: aae:aq_076 methionyl aminopeptidase; methionine aminopeptidase, type I 251827..252600 Hydrogenobaculum sp. Y04AAS1 6743081 YP_002120956.1 CDS infA NC_011126.1 252602 252844 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 252602..252844 Hydrogenobaculum sp. Y04AAS1 6743082 YP_002120957.1 CDS HY04AAS1_0289 NC_011126.1 252854 252967 D PFAM: ribosomal protein L36; KEGG: tpd:Teth39_0398 ribosomal protein L36; 50S ribosomal protein L36 252854..252967 Hydrogenobaculum sp. Y04AAS1 6743083 YP_002120958.1 CDS rpsM NC_011126.1 252982 253362 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 252982..253362 Hydrogenobaculum sp. Y04AAS1 6743084 YP_002120959.1 CDS HY04AAS1_0291 NC_011126.1 253375 253767 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 253375..253767 Hydrogenobaculum sp. Y04AAS1 6743085 YP_002120960.1 CDS rpsD NC_011126.1 253771 254394 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 253771..254394 Hydrogenobaculum sp. Y04AAS1 6743086 YP_002120961.1 CDS HY04AAS1_0293 NC_011126.1 254405 255364 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 254405..255364 Hydrogenobaculum sp. Y04AAS1 6743087 YP_002120962.1 CDS rplQ NC_011126.1 255369 255725 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 255369..255725 Hydrogenobaculum sp. Y04AAS1 6743088 YP_002120963.1 CDS HY04AAS1_0295 NC_011126.1 255722 255958 D PFAM: protein of unknown function YGGT; KEGG: btk:BT9727_3640 hypothetical protein; hypothetical protein 255722..255958 Hydrogenobaculum sp. Y04AAS1 6743089 YP_002120964.1 CDS HY04AAS1_0296 NC_011126.1 255985 257292 D KEGG: aae:aq_1720 signal recognition particle receptor protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 255985..257292 Hydrogenobaculum sp. Y04AAS1 6743090 YP_002120965.1 CDS HY04AAS1_0297 NC_011126.1 257410 257646 D PFAM: ribosomal protein S16; KEGG: aae:aq_123 30S ribosomal protein S16; 30S ribosomal protein S16 257410..257646 Hydrogenobaculum sp. Y04AAS1 6743091 YP_002120966.1 CDS HY04AAS1_0298 NC_011126.1 257660 257899 D KEGG: aae:aq_124a hypothetical protein; hypothetical protein 257660..257899 Hydrogenobaculum sp. Y04AAS1 6743092 YP_002120967.1 CDS HY04AAS1_0299 NC_011126.1 258023 259117 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sul:SYO3AOP1_0981 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase domain-containing protein 258023..259117 Hydrogenobaculum sp. Y04AAS1 6743093 YP_002120968.1 CDS HY04AAS1_0300 NC_011126.1 259250 260029 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pub:SAR11_0604 phosphomethylpyrimidine kinase; Phosphomethylpyrimidine kinase complement(259250..260029) Hydrogenobaculum sp. Y04AAS1 6743094 YP_002120969.1 CDS HY04AAS1_0301 NC_011126.1 260026 260742 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_413 ABC transporter; ABC transporter complement(260026..260742) Hydrogenobaculum sp. Y04AAS1 6743095 YP_002120970.1 CDS HY04AAS1_0302 NC_011126.1 260748 261311 R KEGG: cha:CHAB381_0509 hypothetical protein; hypothetical protein complement(260748..261311) Hydrogenobaculum sp. Y04AAS1 6743096 YP_002120971.1 CDS HY04AAS1_0303 NC_011126.1 261379 262083 D KEGG: sun:SUN_0338 hypothetical protein; hypothetical protein 261379..262083 Hydrogenobaculum sp. Y04AAS1 6743097 YP_002120972.1 CDS HY04AAS1_0304 NC_011126.1 262085 264298 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7491 glycosyl transferase, family 2; type 11 methyltransferase 262085..264298 Hydrogenobaculum sp. Y04AAS1 6743098 YP_002120973.1 CDS HY04AAS1_0305 NC_011126.1 264295 264945 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: aae:aq_553 fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 264295..264945 Hydrogenobaculum sp. Y04AAS1 6743099 YP_002120974.1 CDS HY04AAS1_0306 NC_011126.1 264942 265415 D KEGG: aae:aq_253 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase 264942..265415 Hydrogenobaculum sp. Y04AAS1 6743100 YP_002120975.1 CDS HY04AAS1_0307 NC_011126.1 265542 268358 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cpb:Cphamn1_1863 molybdopterin oxidoreductase; molybdopterin oxidoreductase 265542..268358 Hydrogenobaculum sp. Y04AAS1 6743101 YP_002120976.1 CDS HY04AAS1_0308 NC_011126.1 268377 269048 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cpb:Cphamn1_1864 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 268377..269048 Hydrogenobaculum sp. Y04AAS1 6743102 YP_002120977.1 CDS HY04AAS1_0309 NC_011126.1 269061 269960 D PFAM: Polysulphide reductase NrfD; KEGG: cch:Cag_0952 polysulfide reductase, subunit C; Polysulfide reductase NrfD 269061..269960 Hydrogenobaculum sp. Y04AAS1 6743103 YP_002120978.1 CDS HY04AAS1_0310 NC_011126.1 269954 270919 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aoe:Clos_0209 4Fe-4S ferredoxin iron-sulfur binding domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 269954..270919 Hydrogenobaculum sp. Y04AAS1 6743104 YP_002120979.1 CDS HY04AAS1_0311 NC_011126.1 270982 272643 D PFAM: chemotaxis sensory transducer; KEGG: sul:SYO3AOP1_1662 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 270982..272643 Hydrogenobaculum sp. Y04AAS1 6743105 YP_002120980.1 CDS HY04AAS1_0312 NC_011126.1 272640 273530 D KEGG: aae:aq_977 hypothetical protein; hypothetical protein 272640..273530 Hydrogenobaculum sp. Y04AAS1 6743106 YP_002120981.1 CDS HY04AAS1_0313 NC_011126.1 273500 274255 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: aae:aq_1890 rRNA methylase; TrmH family RNA methyltransferase complement(273500..274255) Hydrogenobaculum sp. Y04AAS1 6743107 YP_002120982.1 CDS HY04AAS1_0314 NC_011126.1 274249 274980 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(274249..274980) Hydrogenobaculum sp. Y04AAS1 6743108 YP_002120983.1 CDS HY04AAS1_0315 NC_011126.1 274977 275327 R KEGG: pho:PH0283 hypothetical protein; hypothetical protein complement(274977..275327) Hydrogenobaculum sp. Y04AAS1 6743109 YP_002120984.1 CDS HY04AAS1_0316 NC_011126.1 275320 276654 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: aae:aq_128 hypothetical protein; MATE efflux family protein complement(275320..276654) Hydrogenobaculum sp. Y04AAS1 6743110 YP_002120985.1 CDS HY04AAS1_0317 NC_011126.1 276725 277393 R hypothetical protein complement(276725..277393) Hydrogenobaculum sp. Y04AAS1 6743111 YP_002120986.1 CDS HY04AAS1_0318 NC_011126.1 277569 277913 D PFAM: cytochrome c class I; KEGG: pap:PSPA7_0619 cytochrome c-551 precursor; cytochrome c class I 277569..277913 Hydrogenobaculum sp. Y04AAS1 6743112 YP_002120987.1 CDS HY04AAS1_0319 NC_011126.1 278070 279551 R KEGG: rso:RSc0196 cytochrome c1 signal peptide protein; hypothetical protein complement(278070..279551) Hydrogenobaculum sp. Y04AAS1 6743113 YP_002120988.1 CDS HY04AAS1_0320 NC_011126.1 279867 280178 D PFAM: Rhodanese domain protein; KEGG: aae:aq_477 hypothetical protein; Rhodanese domain-containing protein 279867..280178 Hydrogenobaculum sp. Y04AAS1 6743114 YP_002120989.1 CDS HY04AAS1_0321 NC_011126.1 280180 281046 D PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: aae:aq_409 aspartate carbamoyltransferase catalytic chain; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain 280180..281046 Hydrogenobaculum sp. Y04AAS1 6743115 YP_002120990.1 CDS HY04AAS1_0322 NC_011126.1 281057 281926 D PFAM: PSP1 domain protein; KEGG: aae:aq_1527 hypothetical protein; PSP1 domain-containing protein 281057..281926 Hydrogenobaculum sp. Y04AAS1 6743116 YP_002120991.1 CDS HY04AAS1_0323 NC_011126.1 281926 282498 D PFAM: protein of unknown function DUF152; KEGG: aae:aq_167 hypothetical protein; hypothetical protein 281926..282498 Hydrogenobaculum sp. Y04AAS1 6743117 YP_002120992.1 CDS HY04AAS1_0324 NC_011126.1 282548 283606 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 282548..283606 Hydrogenobaculum sp. Y04AAS1 6743118 YP_002120993.1 CDS HY04AAS1_0325 NC_011126.1 283603 284211 R PFAM: chromosome segregation and condensation protein ScpA; KEGG: aae:aq_423 segregation and condensation protein A; chromosome segregation and condensation protein ScpA complement(283603..284211) Hydrogenobaculum sp. Y04AAS1 6743119 YP_002120994.1 CDS HY04AAS1_0326 NC_011126.1 284195 284611 R PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: aae:aq_1326 molybdopterin-guainine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis MobB region complement(284195..284611) Hydrogenobaculum sp. Y04AAS1 6743120 YP_002120995.1 CDS HY04AAS1_0327 NC_011126.1 284608 285471 R KEGG: tma:TM1784 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; acetylglutamate kinase complement(284608..285471) Hydrogenobaculum sp. Y04AAS1 6743121 YP_002120996.1 CDS HY04AAS1_0328 NC_011126.1 285482 286843 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aae:aq_736 dihydrolipoamide dehydrogenase; pyridine nucleotide-disulfide oxidoreductase dimerisation protein complement(285482..286843) Hydrogenobaculum sp. Y04AAS1 6743122 YP_002120997.1 CDS HY04AAS1_0329 NC_011126.1 286830 287075 R hypothetical protein complement(286830..287075) Hydrogenobaculum sp. Y04AAS1 6743123 YP_002120998.1 CDS HY04AAS1_0330 NC_011126.1 287075 288250 R PFAM: peptidase M16 domain protein; KEGG: aae:aq_2204 processing protease; peptidase M16 domain-containing protein complement(287075..288250) Hydrogenobaculum sp. Y04AAS1 6743124 YP_002120999.1 CDS HY04AAS1_0331 NC_011126.1 288253 289302 R PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: bph:Bphy_1271 tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(288253..289302) Hydrogenobaculum sp. Y04AAS1 6743125 YP_002121000.1 CDS HY04AAS1_0332 NC_011126.1 289299 289442 R hypothetical protein complement(289299..289442) Hydrogenobaculum sp. Y04AAS1 6743126 YP_002121001.1 CDS HY04AAS1_0333 NC_011126.1 289439 290113 R PFAM: PspA/IM30 family protein; KEGG: bte:BTH_I2081 PspA/IM30 family superfamily; phage shock protein A, PspA complement(289439..290113) Hydrogenobaculum sp. Y04AAS1 6743127 YP_002121002.1 CDS HY04AAS1_0334 NC_011126.1 290169 290483 R KEGG: sul:SYO3AOP1_1250 alkylmercury lyase; alkylmercury lyase complement(290169..290483) Hydrogenobaculum sp. Y04AAS1 6743128 YP_002121003.1 CDS HY04AAS1_0335 NC_011126.1 290626 291294 R KEGG: nph:NP2586A probable anaerobic dehydrogenase subunit; hypothetical protein complement(290626..291294) Hydrogenobaculum sp. Y04AAS1 6743129 YP_002121004.1 CDS HY04AAS1_0336 NC_011126.1 291296 292147 R KEGG: pas:Pars_0497 nitrate reductase subunit, conjectural; hypothetical protein complement(291296..292147) Hydrogenobaculum sp. Y04AAS1 6743130 YP_002121005.1 CDS HY04AAS1_0337 NC_011126.1 292159 293307 R KEGG: nph:NP2584A anaerobic dehydrogenase subunit (probable iron-sulfur protein); Selenate reductase complement(292159..293307) Hydrogenobaculum sp. Y04AAS1 6743131 YP_002121006.1 CDS HY04AAS1_0338 NC_011126.1 293328 296792 R PFAM: molybdopterin oxidoreductase; KEGG: dar:Daro_2584 molybdopterin oxidoreductase:molydopterin dinucleotide-binding region; molybdopterin oxidoreductase complement(293328..296792) Hydrogenobaculum sp. Y04AAS1 6743132 YP_002121007.1 CDS HY04AAS1_0339 NC_011126.1 297010 298656 D PFAM: cytochrome d1 heme region; KEGG: sul:SYO3AOP1_0462 hydroxylamine reductase; Hydroxylamine reductase 297010..298656 Hydrogenobaculum sp. Y04AAS1 6743133 YP_002121008.1 CDS HY04AAS1_0340 NC_011126.1 298658 300331 D PFAM: cytochrome c class I; cytochrome d1 heme region; KEGG: sul:SYO3AOP1_0461 cytochrome d1 heme region; cytochrome d1 heme region 298658..300331 Hydrogenobaculum sp. Y04AAS1 6743134 YP_002121009.1 CDS HY04AAS1_0341 NC_011126.1 300331 301407 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sul:SYO3AOP1_0459 radical SAM domain protein; Radical SAM domain-containing protein 300331..301407 Hydrogenobaculum sp. Y04AAS1 6743135 YP_002121010.1 CDS HY04AAS1_0342 NC_011126.1 301395 302474 D PFAM: cytochrome d1 heme region; KEGG: sun:SUN_0249 heme d1 biosynthesis protein NirF; cytochrome d1 heme region 301395..302474 Hydrogenobaculum sp. Y04AAS1 6743136 YP_002121011.1 CDS HY04AAS1_0343 NC_011126.1 302467 303213 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sul:SYO3AOP1_0051 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 302467..303213 Hydrogenobaculum sp. Y04AAS1 6743137 YP_002121012.1 CDS HY04AAS1_0344 NC_011126.1 303201 304214 D KEGG: nis:NIS_1776 transcriptional regulator, AsnC/Lrp family; AsnC family transcriptional regulator 303201..304214 Hydrogenobaculum sp. Y04AAS1 6743138 YP_002121013.1 CDS HY04AAS1_0345 NC_011126.1 304211 304759 R TIGRFAM: siroheme synthase; KEGG: aae:aq_1237 precorrin-2 oxidase / ferrochelatase; siroheme synthase complement(304211..304759) Hydrogenobaculum sp. Y04AAS1 6743139 YP_002121014.1 CDS HY04AAS1_0346 NC_011126.1 304865 305149 D KEGG: sul:SYO3AOP1_0468 hypothetical protein; hypothetical protein 304865..305149 Hydrogenobaculum sp. Y04AAS1 6743140 YP_002121015.1 CDS HY04AAS1_0347 NC_011126.1 305146 306369 D KEGG: sul:SYO3AOP1_0467 hypothetical protein; hypothetical protein 305146..306369 Hydrogenobaculum sp. Y04AAS1 6743141 YP_002121016.1 CDS HY04AAS1_0348 NC_011126.1 306379 306669 D PFAM: protein of unknown function DUF59; KEGG: ccv:CCV52592_1842 YitW; hypothetical protein 306379..306669 Hydrogenobaculum sp. Y04AAS1 6743142 YP_002121017.1 CDS HY04AAS1_0349 NC_011126.1 306675 307334 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: sul:SYO3AOP1_0465 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(306675..307334) Hydrogenobaculum sp. Y04AAS1 6743143 YP_002121018.1 CDS HY04AAS1_0350 NC_011126.1 307452 307853 D KEGG: sul:SYO3AOP1_0471 hypothetical protein; hypothetical protein 307452..307853 Hydrogenobaculum sp. Y04AAS1 6743144 YP_002121019.1 CDS HY04AAS1_0351 NC_011126.1 307876 310122 D PFAM: cytochrome c oxidase subunit I; KEGG: sul:SYO3AOP1_0472 nitric-oxide reductase; Nitric-oxide reductase 307876..310122 Hydrogenobaculum sp. Y04AAS1 6743145 YP_002121020.1 CDS HY04AAS1_0352 NC_011126.1 310247 311593 D KEGG: aae:aq_1862 hypothetical protein; hypothetical protein 310247..311593 Hydrogenobaculum sp. Y04AAS1 6743146 YP_002121021.1 CDS HY04AAS1_0353 NC_011126.1 311684 312259 R PFAM: regulatory protein TetR; KEGG: aae:aq_2179 transcriptional regulator (TetR/AcrR family); TetR family transcriptional regulator complement(311684..312259) Hydrogenobaculum sp. Y04AAS1 6743147 YP_002121022.1 CDS HY04AAS1_0354 NC_011126.1 312285 313043 R PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: aae:aq_311 protein-L-isoaspartate O-methyltransferase; tRNA methyltransferase complex GCD14 subunit complement(312285..313043) Hydrogenobaculum sp. Y04AAS1 6743148 YP_002121023.1 CDS HY04AAS1_0355 NC_011126.1 313043 313489 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aae:aq_1363 acetyl-CoA carboxylase biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(313043..313489) Hydrogenobaculum sp. Y04AAS1 6743149 YP_002121024.1 CDS HY04AAS1_0356 NC_011126.1 313491 314075 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(313491..314075) Hydrogenobaculum sp. Y04AAS1 6743150 YP_002121025.1 CDS HY04AAS1_0357 NC_011126.1 314068 314823 R PFAM: protein of unknown function DUF815; KEGG: gur:Gura_2054 protein of unknown function DUF815; hypothetical protein complement(314068..314823) Hydrogenobaculum sp. Y04AAS1 6743151 YP_002121026.1 CDS HY04AAS1_0358 NC_011126.1 314820 315692 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(314820..315692) Hydrogenobaculum sp. Y04AAS1 6743152 YP_002121027.1 CDS HY04AAS1_0359 NC_011126.1 315729 317210 R TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: aae:aq_1257 methionyl-tRNA synthetase alpha subunit; methionyl-tRNA synthetase complement(315729..317210) Hydrogenobaculum sp. Y04AAS1 6743153 YP_002121028.1 CDS HY04AAS1_0360 NC_011126.1 317266 317673 D KEGG: cpy:Cphy_3203 hypothetical protein; hypothetical protein 317266..317673 Hydrogenobaculum sp. Y04AAS1 6743154 YP_002121029.1 CDS HY04AAS1_0361 NC_011126.1 317670 317957 R PFAM: protein of unknown function DUF503; KEGG: sul:SYO3AOP1_0859 protein of unknown function DUF503; hypothetical protein complement(317670..317957) Hydrogenobaculum sp. Y04AAS1 6743155 YP_002121030.1 CDS HY04AAS1_0362 NC_011126.1 317994 318443 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sul:SYO3AOP1_0957 TPR repeat-containing protein; hypothetical protein complement(317994..318443) Hydrogenobaculum sp. Y04AAS1 6743156 YP_002121031.1 CDS mnmA NC_011126.1 318440 319468 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(318440..319468) Hydrogenobaculum sp. Y04AAS1 6743157 YP_002121032.1 CDS HY04AAS1_0364 NC_011126.1 319471 319911 R KEGG: aae:aq_1811 thioredoxin; thioredoxin complement(319471..319911) Hydrogenobaculum sp. Y04AAS1 6743158 YP_002121033.1 CDS HY04AAS1_0365 NC_011126.1 319908 320648 R PFAM: protein of unknown function DUF140; KEGG: aae:aq_355 ABC transport system permease protein; hypothetical protein complement(319908..320648) Hydrogenobaculum sp. Y04AAS1 6743159 YP_002121034.1 CDS HY04AAS1_0366 NC_011126.1 320651 321547 R KEGG: tdn:Tmden_1128 hypothetical protein; hypothetical protein complement(320651..321547) Hydrogenobaculum sp. Y04AAS1 6743160 YP_002121035.1 CDS HY04AAS1_0367 NC_011126.1 321583 322464 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: mfa:Mfla_2356 protein of unknown function DUF6, transmembrane; hypothetical protein 321583..322464 Hydrogenobaculum sp. Y04AAS1 6743161 YP_002121036.1 CDS HY04AAS1_0368 NC_011126.1 322467 323438 R TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: aae:aq_1069 UDP-glucose-4-epimerase; UDP-glucose 4-epimerase complement(322467..323438) Hydrogenobaculum sp. Y04AAS1 6743162 YP_002121037.1 CDS HY04AAS1_0369 NC_011126.1 323439 323885 R KEGG: aae:aq_1138 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B complement(323439..323885) Hydrogenobaculum sp. Y04AAS1 6743163 YP_002121038.1 CDS gatB NC_011126.1 323882 325288 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(323882..325288) Hydrogenobaculum sp. Y04AAS1 6743164 YP_002121039.1 CDS HY04AAS1_0371 NC_011126.1 325358 327658 D PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: aae:aq_980 DNA gyrase A subunit; DNA topoisomerase 325358..327658 Hydrogenobaculum sp. Y04AAS1 6743165 YP_002121040.1 CDS HY04AAS1_0372 NC_011126.1 327655 328920 D KEGG: aae:aq_298 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase 327655..328920 Hydrogenobaculum sp. Y04AAS1 6743166 YP_002121041.1 CDS hisB NC_011126.1 328917 329495 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 328917..329495 Hydrogenobaculum sp. Y04AAS1 6743167 YP_002121042.1 CDS HY04AAS1_0374 NC_011126.1 329492 330463 D PFAM: ADP-ribosylation/Crystallin J1; KEGG: aae:aq_534 ADP-ribosylglycohydrolase; ADP-ribosylation/Crystallin J1 329492..330463 Hydrogenobaculum sp. Y04AAS1 6743168 YP_002121043.1 CDS HY04AAS1_0375 NC_011126.1 330478 331488 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 330478..331488 Hydrogenobaculum sp. Y04AAS1 6743169 YP_002121044.1 CDS HY04AAS1_0376 NC_011126.1 331485 332258 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 331485..332258 Hydrogenobaculum sp. Y04AAS1 6743170 YP_002121045.1 CDS HY04AAS1_0377 NC_011126.1 332255 332695 D KEGG: tpd:Teth39_1450 hypothetical protein; hypothetical protein 332255..332695 Hydrogenobaculum sp. Y04AAS1 6743171 YP_002121046.1 CDS HY04AAS1_0378 NC_011126.1 332692 334452 D KEGG: aae:aq_1189 penicillin binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 332692..334452 Hydrogenobaculum sp. Y04AAS1 6743172 YP_002121047.1 CDS HY04AAS1_0379 NC_011126.1 334476 335048 D PFAM: electron transport protein SCO1/SenC; KEGG: aae:aq_988 hypothetical protein; electron transport protein SCO1/SenC 334476..335048 Hydrogenobaculum sp. Y04AAS1 6743173 YP_002121048.1 CDS HY04AAS1_0380 NC_011126.1 335104 335295 D hypothetical protein 335104..335295 Hydrogenobaculum sp. Y04AAS1 6743174 YP_002121049.1 CDS HY04AAS1_0381 NC_011126.1 335292 335993 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sul:SYO3AOP1_1480 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator 335292..335993 Hydrogenobaculum sp. Y04AAS1 6743175 YP_002121050.1 CDS HY04AAS1_0382 NC_011126.1 335984 337147 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pmo:Pmob_0869 histidine kinase; integral membrane sensor signal transduction histidine kinase 335984..337147 Hydrogenobaculum sp. Y04AAS1 6743176 YP_002121051.1 CDS HY04AAS1_0383 NC_011126.1 337144 338205 R PFAM: protein of unknown function UPF0118; KEGG: aae:aq_740 hypothetical protein; hypothetical protein complement(337144..338205) Hydrogenobaculum sp. Y04AAS1 6743177 YP_002121052.1 CDS HY04AAS1_0384 NC_011126.1 338189 338743 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: aae:aq_1815 GTP-binding protein; small GTP-binding protein complement(338189..338743) Hydrogenobaculum sp. Y04AAS1 6743178 YP_002121053.1 CDS HY04AAS1_0385 NC_011126.1 338740 339915 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(338740..339915) Hydrogenobaculum sp. Y04AAS1 6743179 YP_002121054.1 CDS HY04AAS1_0386 NC_011126.1 339912 340574 R PFAM: peptidase M50; KEGG: aae:aq_1853 hypothetical protein; peptidase M50 complement(339912..340574) Hydrogenobaculum sp. Y04AAS1 6743180 YP_002121055.1 CDS HY04AAS1_0387 NC_011126.1 340574 341287 R PFAM: protein of unknown function DUF164; KEGG: aae:aq_1223 hypothetical protein; hypothetical protein complement(340574..341287) Hydrogenobaculum sp. Y04AAS1 6743181 YP_002121056.1 CDS HY04AAS1_0388 NC_011126.1 341318 342337 R PFAM: Radical SAM domain protein; KEGG: aae:aq_1861 [pyruvate formate-lyase] activating enzyme; Radical SAM domain-containing protein complement(341318..342337) Hydrogenobaculum sp. Y04AAS1 6743182 YP_002121057.1 CDS HY04AAS1_0389 NC_011126.1 342387 342770 R PFAM: thioesterase superfamily protein; KEGG: sul:SYO3AOP1_1702 thioesterase superfamily protein; thioesterase superfamily protein complement(342387..342770) Hydrogenobaculum sp. Y04AAS1 6743183 YP_002121058.1 CDS HY04AAS1_0390 NC_011126.1 342767 343615 R PFAM: chemotaxis sensory transducer; KEGG: ppr:PBPRB1868 hypothetical chemotaxis transducer; methyl-accepting chemotaxis sensory transducer complement(342767..343615) Hydrogenobaculum sp. Y04AAS1 6743184 YP_002121059.1 CDS HY04AAS1_0391 NC_011126.1 343627 344406 R PFAM: beta-lactamase domain protein; KEGG: fno:Fnod_0356 beta-lactamase domain protein; beta-lactamase domain-containing protein complement(343627..344406) Hydrogenobaculum sp. Y04AAS1 6743185 YP_002121060.1 CDS HY04AAS1_0392 NC_011126.1 344481 345179 R KEGG: cbk:CLL_A3034 hypothetical protein; hypothetical protein complement(344481..345179) Hydrogenobaculum sp. Y04AAS1 6743186 YP_002121061.1 CDS HY04AAS1_0393 NC_011126.1 345173 346366 R PFAM: Radical SAM domain protein; KEGG: abu:Abu_0826 hypothetical protein; Radical SAM domain-containing protein complement(345173..346366) Hydrogenobaculum sp. Y04AAS1 6743187 YP_002121062.1 CDS HY04AAS1_0394 NC_011126.1 346405 347463 R PFAM: CheB methylesterase; response regulator receiver; KEGG: pho:PH0483 chemotaxis-specific methylesterase; response regulator receiver modulated CheB methylesterase complement(346405..347463) Hydrogenobaculum sp. Y04AAS1 6743188 YP_002121063.1 CDS HY04AAS1_0395 NC_011126.1 347469 348239 R KEGG: aae:aq_2195 undecaprenyl-diphosphatase; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase complement(347469..348239) Hydrogenobaculum sp. Y04AAS1 6743189 YP_002121064.1 CDS HY04AAS1_0396 NC_011126.1 348236 348748 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: sul:SYO3AOP1_0206 lipopolysaccharide transport periplasmic protein LptA; lipopolysaccharide transport periplasmic protein LptA complement(348236..348748) Hydrogenobaculum sp. Y04AAS1 6743190 YP_002121065.1 CDS HY04AAS1_0397 NC_011126.1 348738 349241 R PFAM: protein of unknown function DUF1239; KEGG: aae:aq_2172 protein; hypothetical protein complement(348738..349241) Hydrogenobaculum sp. Y04AAS1 6743191 YP_002121066.1 CDS HY04AAS1_0398 NC_011126.1 349261 349503 R KEGG: sul:SYO3AOP1_0809 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(349261..349503) Hydrogenobaculum sp. Y04AAS1 6743192 YP_002121067.1 CDS HY04AAS1_0399 NC_011126.1 349551 350006 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sul:SYO3AOP1_1370 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 349551..350006 Hydrogenobaculum sp. Y04AAS1 6743193 YP_002121068.1 CDS HY04AAS1_0400 NC_011126.1 349993 350388 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sul:SYO3AOP1_1369 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR 349993..350388 Hydrogenobaculum sp. Y04AAS1 6743194 YP_002121069.1 CDS HY04AAS1_0401 NC_011126.1 350385 351209 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sul:SYO3AOP1_1368 TonB family protein; TonB family protein 350385..351209 Hydrogenobaculum sp. Y04AAS1 6743195 YP_002121070.1 CDS HY04AAS1_0402 NC_011126.1 351206 351457 R PFAM: nitrogen-fixing NifU domain protein; KEGG: sul:SYO3AOP1_1302 nitrogen-fixing NifU domain protein; nitrogen-fixing NifU domain-containing protein complement(351206..351457) Hydrogenobaculum sp. Y04AAS1 6743196 YP_002121071.1 CDS HY04AAS1_0403 NC_011126.1 351470 351697 R KEGG: aae:aq_900 protein; hypothetical protein complement(351470..351697) Hydrogenobaculum sp. Y04AAS1 6743197 YP_002121072.1 CDS HY04AAS1_0404 NC_011126.1 351707 351952 R PFAM: SirA family protein; KEGG: sul:SYO3AOP1_1300 SirA family protein; SirA family protein complement(351707..351952) Hydrogenobaculum sp. Y04AAS1 6743198 YP_002121073.1 CDS HY04AAS1_0405 NC_011126.1 351942 352979 R KEGG: sul:SYO3AOP1_1299 thiamine biosynthesis protein; thiamine biosynthesis protein complement(351942..352979) Hydrogenobaculum sp. Y04AAS1 6743199 YP_002121074.1 CDS HY04AAS1_0406 NC_011126.1 352981 353445 R PFAM: nitrogen-fixing NifU domain protein; KEGG: aae:aq_896 NifU protein; nitrogen-fixing NifU domain-containing protein complement(352981..353445) Hydrogenobaculum sp. Y04AAS1 6743200 YP_002121075.1 CDS HY04AAS1_0407 NC_011126.1 353528 354538 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(353528..354538) Hydrogenobaculum sp. Y04AAS1 6743201 YP_002121076.1 CDS HY04AAS1_0408 NC_011126.1 354535 355104 R TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: aae:aq_768 hypothetical protein; 2'-5' RNA ligase complement(354535..355104) Hydrogenobaculum sp. Y04AAS1 6743202 YP_002121077.1 CDS HY04AAS1_0409 NC_011126.1 355101 355313 R KEGG: sul:SYO3AOP1_1219 hypothetical protein; hypothetical protein complement(355101..355313) Hydrogenobaculum sp. Y04AAS1 6743203 YP_002121078.1 CDS HY04AAS1_0410 NC_011126.1 355375 356382 D TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: aae:aq_1866 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 355375..356382 Hydrogenobaculum sp. Y04AAS1 6743204 YP_002121079.1 CDS HY04AAS1_0411 NC_011126.1 356369 356719 D KEGG: sul:SYO3AOP1_0749 hypothetical protein; hypothetical protein 356369..356719 Hydrogenobaculum sp. Y04AAS1 6743205 YP_002121080.1 CDS HY04AAS1_0412 NC_011126.1 356697 357623 D PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: bce:BC2482 hypothetical cytosolic protein; hypothetical protein 356697..357623 Hydrogenobaculum sp. Y04AAS1 6743206 YP_002121081.1 CDS HY04AAS1_0413 NC_011126.1 357620 358036 D KEGG: sul:SYO3AOP1_0714 hypothetical protein; hypothetical protein 357620..358036 Hydrogenobaculum sp. Y04AAS1 6743207 YP_002121082.1 CDS HY04AAS1_0414 NC_011126.1 358046 359665 D KEGG: aae:aq_923 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase 358046..359665 Hydrogenobaculum sp. Y04AAS1 6743208 YP_002121083.1 CDS HY04AAS1_0415 NC_011126.1 359738 360469 D KEGG: afw:Anae109_3615 hypothetical protein; hypothetical protein 359738..360469 Hydrogenobaculum sp. Y04AAS1 6743209 YP_002121084.1 CDS HY04AAS1_0416 NC_011126.1 360924 361532 D KEGG: aae:aq_629 chromosome assembly protein homolog; hypothetical protein 360924..361532 Hydrogenobaculum sp. Y04AAS1 6743210 YP_002121085.1 CDS HY04AAS1_0417 NC_011126.1 361552 362142 R KEGG: sul:SYO3AOP1_1438 DNA polymerase III epsilon subunit; TIGRFAM: DNA polymerase III epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(361552..362142) Hydrogenobaculum sp. Y04AAS1 6743211 YP_002121086.1 CDS HY04AAS1_0418 NC_011126.1 362156 363106 R PFAM: SurA domain; KEGG: aae:aq_1694 hypothetical peptidylprolyl isomerase; SurA domain complement(362156..363106) Hydrogenobaculum sp. Y04AAS1 6743212 YP_002121087.1 CDS HY04AAS1_0419 NC_011126.1 363142 364404 R PFAM: CBS domain containing protein; KEGG: aae:aq_040 hypothetical protein; CBS domain containing protein complement(363142..364404) Hydrogenobaculum sp. Y04AAS1 6743213 YP_002121088.1 CDS HY04AAS1_0420 NC_011126.1 364391 364960 R KEGG: sul:SYO3AOP1_1161 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(364391..364960) Hydrogenobaculum sp. Y04AAS1 6743214 YP_002121089.1 CDS HY04AAS1_0421 NC_011126.1 364951 365754 R PFAM: protein of unknown function DUF72; KEGG: aae:aq_1408 hypothetical protein; hypothetical protein complement(364951..365754) Hydrogenobaculum sp. Y04AAS1 6743215 YP_002121090.1 CDS HY04AAS1_0422 NC_011126.1 365751 366950 R KEGG: sul:SYO3AOP1_1394 hypothetical protein; hypothetical protein complement(365751..366950) Hydrogenobaculum sp. Y04AAS1 6743216 YP_002121091.1 CDS HY04AAS1_0423 NC_011126.1 366931 367908 R KEGG: aae:aq_288 hypothetical gluconokinase; glucokinase complement(366931..367908) Hydrogenobaculum sp. Y04AAS1 6743217 YP_002121092.1 CDS HY04AAS1_0424 NC_011126.1 367901 369769 R PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aae:aq_437 NADH dehydrogenase I chain G; ferredoxin complement(367901..369769) Hydrogenobaculum sp. Y04AAS1 6743218 YP_002121093.1 CDS HY04AAS1_0425 NC_011126.1 369756 370433 R KEGG: aae:aq_1580 orotidine-5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(369756..370433) Hydrogenobaculum sp. Y04AAS1 6743219 YP_002121094.1 CDS HY04AAS1_0426 NC_011126.1 370426 371277 R PFAM: protein of unknown function DUF86; KEGG: aae:aq_1668 hypothetical protein; hypothetical protein complement(370426..371277) Hydrogenobaculum sp. Y04AAS1 6743220 YP_002121095.1 CDS HY04AAS1_0427 NC_011126.1 371322 373154 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(371322..373154) Hydrogenobaculum sp. Y04AAS1 6743221 YP_002121096.1 CDS HY04AAS1_0428 NC_011126.1 373160 373687 R KEGG: aae:aq_1343 hypothetical protein; hypothetical protein complement(373160..373687) Hydrogenobaculum sp. Y04AAS1 6743222 YP_002121097.1 CDS HY04AAS1_0429 NC_011126.1 373684 374856 R PFAM: aminotransferase class I and II; KEGG: aae:aq_1969 aspartate aminotransferase; class I and II aminotransferase complement(373684..374856) Hydrogenobaculum sp. Y04AAS1 6743223 YP_002121098.1 CDS HY04AAS1_0430 NC_011126.1 374871 375536 R PFAM: sugar fermentation stimulation protein; KEGG: aae:aq_057 sugar fermentation stimulation protein; sugar fermentation stimulation protein complement(374871..375536) Hydrogenobaculum sp. Y04AAS1 6743224 YP_002121099.1 CDS HY04AAS1_0431 NC_011126.1 375526 377571 R KEGG: tva:TVAG_355490 viral A-type inclusion protein, Pfam: ASD2 Myosin_tail_1 TBPIP BRE1 OmpH DMPK_coil HR1 DUF904 Rad50_zn_hook Exonuc_VII_S Prefoldin_2 Snf7 CDC37_N ATG16 BAR Rab5-bind bZIP_1 EzrA DUF593 TPR_MLP1_2 FlaC_arch Laminin_I Prefoldin GBP_C PspA_IM30 KNOX2 Tropomyosin Macscav_rec DUF1978 Spectrin Cob_adeno_trans Prp19 SMC_Nse1 Apolipoprotein Filament CHASE3 Baculo_PEP_C DREPP HALZ Vicilin_N GRIP PROSITE: ASN_RICH GLU_RICH; hypothetical protein complement(375526..377571) Hydrogenobaculum sp. Y04AAS1 6743225 YP_002121100.1 CDS HY04AAS1_0432 NC_011126.1 377624 378676 D PFAM: glycosyl transferase group 1; KEGG: sul:SYO3AOP1_1199 glycosyl transferase group 1; group 1 glycosyl transferase 377624..378676 Hydrogenobaculum sp. Y04AAS1 6743226 YP_002121101.1 CDS HY04AAS1_0433 NC_011126.1 378686 379327 D PFAM: phospholipid/glycerol acyltransferase; KEGG: aae:aq_2058 2-acylglycerophosphoethanolamine acyltransferase; phospholipid/glycerol acyltransferase 378686..379327 Hydrogenobaculum sp. Y04AAS1 6743227 YP_002121102.1 CDS HY04AAS1_0434 NC_011126.1 379320 379934 R PFAM: protein of unknown function UPF0126; KEGG: sul:SYO3AOP1_0167 protein of unknown function UPF0126; hypothetical protein complement(379320..379934) Hydrogenobaculum sp. Y04AAS1 6743228 YP_002121103.1 CDS HY04AAS1_0435 NC_011126.1 379927 381300 R TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid complement(379927..381300) Hydrogenobaculum sp. Y04AAS1 6743229 YP_002121104.1 CDS HY04AAS1_0436 NC_011126.1 381329 382177 D KEGG: aae:aq_1155 ATP phosphoribosyltransferase regulatory subunit; ATP phosphoribosyltransferase regulatory subunit 381329..382177 Hydrogenobaculum sp. Y04AAS1 6743230 YP_002121105.1 CDS HY04AAS1_0437 NC_011126.1 382178 384220 R PFAM: Organic solvent tolerance protein; KEGG: aae:aq_967 organic solvent tolerance protein; Organic solvent tolerance protein complement(382178..384220) Hydrogenobaculum sp. Y04AAS1 6743231 YP_002121106.1 CDS HY04AAS1_0438 NC_011126.1 384226 385002 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; KEGG: aae:aq_966 4-nitrophenylphosphatase; HAD-superfamily hydrolase complement(384226..385002) Hydrogenobaculum sp. Y04AAS1 6743232 YP_002121107.1 CDS HY04AAS1_0439 NC_011126.1 385026 385448 D KEGG: ehi:EHI_049640 phospholipid-transporting P-type ATPase; hypothetical protein 385026..385448 Hydrogenobaculum sp. Y04AAS1 6743233 YP_002121108.1 CDS HY04AAS1_0440 NC_011126.1 385471 385704 D KEGG: tdn:Tmden_0906 protein of unknown function DUF465; hypothetical protein 385471..385704 Hydrogenobaculum sp. Y04AAS1 6743234 YP_002121109.1 CDS HY04AAS1_0441 NC_011126.1 385701 386198 D TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: aae:aq_1398 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase, small subunit 385701..386198 Hydrogenobaculum sp. Y04AAS1 6743235 YP_002121110.1 CDS HY04AAS1_0442 NC_011126.1 386173 386727 D KEGG: aae:aq_1907 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 386173..386727 Hydrogenobaculum sp. Y04AAS1 6743236 YP_002121111.1 CDS HY04AAS1_0443 NC_011126.1 386724 387464 D TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: aae:aq_773 hemolysin; hemolysin A 386724..387464 Hydrogenobaculum sp. Y04AAS1 6743237 YP_002121112.1 CDS HY04AAS1_0444 NC_011126.1 387461 390007 D TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: aae:aq_624 penicillin binding protein 1A; penicillin-binding protein, 1A family 387461..390007 Hydrogenobaculum sp. Y04AAS1 6743238 YP_002121113.1 CDS HY04AAS1_0445 NC_011126.1 389997 390755 D TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: aae:aq_181 imidazoleglycerol-phosphate synthase cyclase; imidazoleglycerol phosphate synthase, cyclase subunit 389997..390755 Hydrogenobaculum sp. Y04AAS1 6743239 YP_002121114.1 CDS HY04AAS1_0446 NC_011126.1 390809 391393 R PFAM: membrane-flanked domain; KEGG: cau:Caur_2925 membrane-flanked domain; membrane-flanked domain-containing protein complement(390809..391393) Hydrogenobaculum sp. Y04AAS1 6743240 YP_002121115.1 CDS HY04AAS1_0447 NC_011126.1 391406 391855 R PFAM: protein of unknown function DUF474; KEGG: sul:SYO3AOP1_1279 protein of unknown function DUF474; hypothetical protein complement(391406..391855) Hydrogenobaculum sp. Y04AAS1 6743241 YP_002121116.1 CDS rplI NC_011126.1 391941 392387 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(391941..392387) Hydrogenobaculum sp. Y04AAS1 6743242 YP_002121117.1 CDS rpsR NC_011126.1 392398 392619 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(392398..392619) Hydrogenobaculum sp. Y04AAS1 6743243 YP_002121118.1 CDS HY04AAS1_0450 NC_011126.1 392645 393103 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sul:SYO3AOP1_1690 single-strand binding protein; single-strand binding protein complement(392645..393103) Hydrogenobaculum sp. Y04AAS1 6743244 YP_002121119.1 CDS rpsF NC_011126.1 393116 393454 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(393116..393454) Hydrogenobaculum sp. Y04AAS1 6743245 YP_002121120.1 CDS HY04AAS1_0452 NC_011126.1 393777 394001 D KEGG: afu:AF0301 hypothetical protein; hypothetical protein 393777..394001 Hydrogenobaculum sp. Y04AAS1 6743246 YP_002121121.1 CDS HY04AAS1_0453 NC_011126.1 394008 394418 D PFAM: PilT protein domain protein; KEGG: pab:PAB0786 hypothetical protein; PilT protein domain-containing protein 394008..394418 Hydrogenobaculum sp. Y04AAS1 6743247 YP_002121122.1 CDS HY04AAS1_0454 NC_011126.1 394499 395701 D PFAM: protein of unknown function DUF214; KEGG: aae:aq_1585 ABC transporter, permease protein; hypothetical protein 394499..395701 Hydrogenobaculum sp. Y04AAS1 6743248 YP_002121123.1 CDS HY04AAS1_0455 NC_011126.1 395694 396326 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_417 ABC transporter; ABC transporter 395694..396326 Hydrogenobaculum sp. Y04AAS1 6743249 YP_002121124.1 CDS HY04AAS1_0456 NC_011126.1 396361 397749 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: sul:SYO3AOP1_0747 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein complement(396361..397749) Hydrogenobaculum sp. Y04AAS1 6743250 YP_002121125.1 CDS HY04AAS1_0457 NC_011126.1 397954 398334 D SMART: Rhodanese domain protein; KEGG: sul:SYO3AOP1_1272 rhodanese domain protein; Rhodanese domain-containing protein 397954..398334 Hydrogenobaculum sp. Y04AAS1 6743251 YP_002121126.1 CDS HY04AAS1_0458 NC_011126.1 398379 399638 R PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sul:SYO3AOP1_0932 arsenical pump membrane protein; Arsenical pump membrane protein complement(398379..399638) Hydrogenobaculum sp. Y04AAS1 6743252 YP_002121127.1 CDS HY04AAS1_0459 NC_011126.1 399681 399974 R KEGG: tdn:Tmden_1057 hypothetical protein; hypothetical protein complement(399681..399974) Hydrogenobaculum sp. Y04AAS1 6743253 YP_002121128.1 CDS HY04AAS1_0460 NC_011126.1 400021 401052 R KEGG: aae:aq_1134 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; glutamate 5-kinase complement(400021..401052) Hydrogenobaculum sp. Y04AAS1 6743254 YP_002121129.1 CDS HY04AAS1_0461 NC_011126.1 401061 401264 R PFAM: ribosomal protein L35; KEGG: aae:aq_792a 50S ribosomal protein L35; 50S ribosomal protein L35 complement(401061..401264) Hydrogenobaculum sp. Y04AAS1 6743255 YP_002121130.1 CDS HY04AAS1_0462 NC_011126.1 401303 401818 R IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 complement(401303..401818) Hydrogenobaculum sp. Y04AAS1 6743256 YP_002121131.1 CDS HY04AAS1_0463 NC_011126.1 401848 404040 R SMART: helicase c2; DEAD-like helicases; KEGG: aae:aq_358 ATP-dependent helicase (DinG family); helicase c2 complement(401848..404040) Hydrogenobaculum sp. Y04AAS1 6743257 YP_002121132.1 CDS HY04AAS1_0464 NC_011126.1 404040 405824 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: aae:aq_1677 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(404040..405824) Hydrogenobaculum sp. Y04AAS1 6743258 YP_002121133.1 CDS HY04AAS1_0465 NC_011126.1 405891 406331 D hypothetical protein 405891..406331 Hydrogenobaculum sp. Y04AAS1 6743259 YP_002121134.1 CDS HY04AAS1_0466 NC_011126.1 406582 407133 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: aae:aq_045 Rieske-I iron sulfur protein; Rieske (2Fe-2S) domain-containing protein 406582..407133 Hydrogenobaculum sp. Y04AAS1 6743260 YP_002121135.1 CDS HY04AAS1_0467 NC_011126.1 407164 408708 D PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sul:SYO3AOP1_1077 cytochrome bd ubiquinol oxidase subunit I; cytochrome bd ubiquinol oxidase subunit I 407164..408708 Hydrogenobaculum sp. Y04AAS1 6743261 YP_002121136.1 CDS HY04AAS1_0468 NC_011126.1 408722 409762 D KEGG: sul:SYO3AOP1_1076 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II 408722..409762 Hydrogenobaculum sp. Y04AAS1 6743262 YP_002121137.1 CDS HY04AAS1_0469 NC_011126.1 409925 410908 R TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: aae:aq_2069 GTP-binding protein; GTP-binding protein Obg/CgtA complement(409925..410908) Hydrogenobaculum sp. Y04AAS1 6743263 YP_002121138.1 CDS HY04AAS1_0470 NC_011126.1 410916 411920 R KEGG: aae:aq_1065 glyceraldehyde-3-phosphate dehydrogenase; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I complement(410916..411920) Hydrogenobaculum sp. Y04AAS1 6743264 YP_002121139.1 CDS HY04AAS1_0471 NC_011126.1 411955 412635 R KEGG: pmo:Pmob_1140 protein of unknown function DUF554; hypothetical protein complement(411955..412635) Hydrogenobaculum sp. Y04AAS1 6743265 YP_002121140.1 CDS HY04AAS1_0472 NC_011126.1 412635 412973 R PFAM: histidine triad (HIT) protein; KEGG: aae:aq_141 protein kinase C inhibitor (HIT family); histidine triad (HIT) protein complement(412635..412973) Hydrogenobaculum sp. Y04AAS1 6743266 YP_002121141.1 CDS HY04AAS1_0475 NC_011126.1 416267 416563 D hypothetical protein 416267..416563 Hydrogenobaculum sp. Y04AAS1 6743269 YP_002121142.1 CDS HY04AAS1_0476 NC_011126.1 416542 417432 R PFAM: protein of unknown function DUF752; KEGG: aae:aq_1980 hypothetical protein; hypothetical protein complement(416542..417432) Hydrogenobaculum sp. Y04AAS1 6743270 YP_002121143.1 CDS HY04AAS1_0477 NC_011126.1 417383 418303 R TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; KEGG: aae:aq_2119 thiamine monophosphate kinase; thiamine-monophosphate kinase complement(417383..418303) Hydrogenobaculum sp. Y04AAS1 6743271 YP_002121144.1 CDS HY04AAS1_0478 NC_011126.1 418300 418689 R KEGG: gur:Gura_3306 hypothetical protein; hypothetical protein complement(418300..418689) Hydrogenobaculum sp. Y04AAS1 6743272 YP_002121145.1 CDS HY04AAS1_0479 NC_011126.1 418683 419321 R PFAM: beta-lactamase domain protein; KEGG: aae:aq_2135 hypothetical protein; beta-lactamase domain-containing protein complement(418683..419321) Hydrogenobaculum sp. Y04AAS1 6743273 YP_002121146.1 CDS HY04AAS1_0480 NC_011126.1 419278 419517 R hypothetical protein complement(419278..419517) Hydrogenobaculum sp. Y04AAS1 6743274 YP_002121147.1 CDS HY04AAS1_0481 NC_011126.1 419548 420447 R PFAM: protein of unknown function DUF58; KEGG: aae:aq_1508 hypothetical protein; hypothetical protein complement(419548..420447) Hydrogenobaculum sp. Y04AAS1 6743275 YP_002121148.1 CDS HY04AAS1_0482 NC_011126.1 420444 421397 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aae:aq_1509 oligopeptide transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(420444..421397) Hydrogenobaculum sp. Y04AAS1 6743276 YP_002121149.1 CDS HY04AAS1_0483 NC_011126.1 421384 422064 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mja:MJ1656 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (HpcE); 5-carboxymethyl-2-hydroxymuconate Delta-isomerase complement(421384..422064) Hydrogenobaculum sp. Y04AAS1 6743277 YP_002121150.1 CDS HY04AAS1_0484 NC_011126.1 422088 425534 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: aae:aq_629 chromosome assembly protein homolog; chromosome segregation protein SMC complement(422088..425534) Hydrogenobaculum sp. Y04AAS1 6743278 YP_002121151.1 CDS HY04AAS1_0485 NC_011126.1 425536 426744 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(425536..426744) Hydrogenobaculum sp. Y04AAS1 6743279 YP_002121152.1 CDS HY04AAS1_0487 NC_011126.1 428522 429685 D catalyzes the formation of LL-diaminopimelate from tetrahydrodipicolinate; involved in lysine and peptidoglycan synthesis; LL-diaminopimelate aminotransferase 428522..429685 Hydrogenobaculum sp. Y04AAS1 6743281 YP_002121153.1 CDS HY04AAS1_0488 NC_011126.1 429682 429867 D PFAM: protein of unknown function DUF343; Transcription factor AL2, zinc ribbon domain protein; KEGG: sfu:Sfum_3635 protein of unknown function DUF343; hypothetical protein 429682..429867 Hydrogenobaculum sp. Y04AAS1 6743282 YP_002121154.1 CDS HY04AAS1_0489 NC_011126.1 429845 431122 D PFAM: FAD linked oxidase domain protein; KEGG: cte:CT0170 hypothetical protein; FAD linked oxidase domain-containing protein 429845..431122 Hydrogenobaculum sp. Y04AAS1 6743283 YP_002121155.1 CDS HY04AAS1_0490 NC_011126.1 431135 432424 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: aae:aq_1919 GTP binding protein Era; small GTP-binding protein 431135..432424 Hydrogenobaculum sp. Y04AAS1 6743284 YP_002121156.1 CDS argJ NC_011126.1 432428 433558 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein 432428..433558 Hydrogenobaculum sp. Y04AAS1 6743285 YP_002121157.1 CDS HY04AAS1_0492 NC_011126.1 433555 434049 R KEGG: pca:Pcar_2534 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(433555..434049) Hydrogenobaculum sp. Y04AAS1 6743286 YP_002121158.1 CDS HY04AAS1_0493 NC_011126.1 434046 434543 R PFAM: amino acid-binding ACT domain protein; KEGG: sul:SYO3AOP1_0896 amino acid-binding ACT domain protein; amino acid-binding ACT domain-containing protein complement(434046..434543) Hydrogenobaculum sp. Y04AAS1 6743287 YP_002121159.1 CDS HY04AAS1_0494 NC_011126.1 434748 436142 D TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; KEGG: lpc:LPC_3244 fumarate hydratase; fumarate hydratase, class II 434748..436142 Hydrogenobaculum sp. Y04AAS1 6743289 YP_002121160.1 CDS HY04AAS1_0495 NC_011126.1 436132 437466 D PFAM: aminotransferase class-III; KEGG: aae:aq_170 DapA aminotransferase; class III aminotransferase 436132..437466 Hydrogenobaculum sp. Y04AAS1 6743290 YP_002121161.1 CDS HY04AAS1_0496 NC_011126.1 437463 437861 D PFAM: protein of unknown function DUF55; KEGG: sul:SYO3AOP1_0170 protein of unknown function DUF55; hypothetical protein 437463..437861 Hydrogenobaculum sp. Y04AAS1 6743291 YP_002121162.1 CDS HY04AAS1_0497 NC_011126.1 437858 438424 D KEGG: mja:MJ1644 hypothetical protein; hypothetical protein 437858..438424 Hydrogenobaculum sp. Y04AAS1 6743292 YP_002121163.1 CDS HY04AAS1_0498 NC_011126.1 438412 438762 R KEGG: csc:Csac_1648 hypothetical protein; hypothetical protein complement(438412..438762) Hydrogenobaculum sp. Y04AAS1 6743293 YP_002121164.1 CDS glyA NC_011126.1 438746 439999 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(438746..439999) Hydrogenobaculum sp. Y04AAS1 6743294 YP_002121165.1 CDS HY04AAS1_0500 NC_011126.1 440011 441333 R KEGG: nis:NIS_0741 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase complement(440011..441333) Hydrogenobaculum sp. Y04AAS1 6743295 YP_002121166.1 CDS HY04AAS1_0501 NC_011126.1 441349 442098 R PFAM: protein of unknown function DUF28; KEGG: aae:aq_1575 hypothetical protein; hypothetical protein complement(441349..442098) Hydrogenobaculum sp. Y04AAS1 6743296 YP_002121167.1 CDS HY04AAS1_0502 NC_011126.1 442110 442694 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: aae:aq_2049 hypothetical protein; DeoR family transcriptional regulator complement(442110..442694) Hydrogenobaculum sp. Y04AAS1 6743297 YP_002121168.1 CDS HY04AAS1_0503 NC_011126.1 442741 443331 R PFAM: ExsB family protein; KEGG: dsy:DSY0668 hypothetical protein; ExsB family protein complement(442741..443331) Hydrogenobaculum sp. Y04AAS1 6743298 YP_002121169.1 CDS HY04AAS1_0504 NC_011126.1 443462 443896 D KEGG: aae:aq_252 protein; hypothetical protein 443462..443896 Hydrogenobaculum sp. Y04AAS1 6743300 YP_002121170.1 CDS HY04AAS1_0505 NC_011126.1 443893 444966 D TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: aae:aq_138 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; riboflavin biosynthesis protein RibD 443893..444966 Hydrogenobaculum sp. Y04AAS1 6743301 YP_002121171.1 CDS queA NC_011126.1 444947 445978 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 444947..445978 Hydrogenobaculum sp. Y04AAS1 6743302 YP_002121172.1 CDS HY04AAS1_0507 NC_011126.1 446032 446658 R KEGG: rno:684795 hypothetical protein; hypothetical protein complement(446032..446658) Hydrogenobaculum sp. Y04AAS1 6743303 YP_002121173.1 CDS HY04AAS1_0508 NC_011126.1 446724 447593 R PFAM: thymidylate synthase complementing protein ThyX; KEGG: sul:SYO3AOP1_0919 thymidylate synthase complementing protein ThyX; thymidylate synthase complementing protein ThyX complement(446724..447593) Hydrogenobaculum sp. Y04AAS1 6743304 YP_002121174.1 CDS HY04AAS1_0509 NC_011126.1 447664 448401 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sul:SYO3AOP1_1671 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 447664..448401 Hydrogenobaculum sp. Y04AAS1 6743305 YP_002121175.1 CDS acpP NC_011126.1 448432 448665 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 448432..448665 Hydrogenobaculum sp. Y04AAS1 6743306 YP_002121176.1 CDS HY04AAS1_0511 NC_011126.1 448662 449903 D TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: aae:aq_1717 3-oxoacyl-[acyl-carrier-protein] synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 448662..449903 Hydrogenobaculum sp. Y04AAS1 6743307 YP_002121177.1 CDS HY04AAS1_0512 NC_011126.1 449916 450614 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: aae:aq_946 RNase III; Ribonuclease III 449916..450614 Hydrogenobaculum sp. Y04AAS1 6743308 YP_002121178.1 CDS HY04AAS1_0513 NC_011126.1 450595 451365 D KEGG: mae:Maeo_0859 N-glycosylase/DNA lyase; hypothetical protein 450595..451365 Hydrogenobaculum sp. Y04AAS1 6743309 YP_002121179.1 CDS HY04AAS1_0514 NC_011126.1 451419 451691 D KEGG: sul:SYO3AOP1_1345 conserved hypothetical lipoprotein; hypothetical protein 451419..451691 Hydrogenobaculum sp. Y04AAS1 6743310 YP_002121180.1 CDS HY04AAS1_0515 NC_011126.1 451692 452798 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 451692..452798 Hydrogenobaculum sp. Y04AAS1 6743311 YP_002121181.1 CDS thrS NC_011126.1 452811 454724 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 452811..454724 Hydrogenobaculum sp. Y04AAS1 6743312 YP_002121182.1 CDS HY04AAS1_0517 NC_011126.1 454721 455386 D TIGRFAM: dethiobiotin synthase; KEGG: sul:SYO3AOP1_1157 dethiobiotin synthase; dethiobiotin synthase 454721..455386 Hydrogenobaculum sp. Y04AAS1 6743313 YP_002121183.1 CDS HY04AAS1_0518 NC_011126.1 455434 457344 D KEGG: aae:aq_936 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 455434..457344 Hydrogenobaculum sp. Y04AAS1 6743314 YP_002121184.1 CDS HY04AAS1_0519 NC_011126.1 457413 458687 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; 3-isopropylmalate dehydratase large subunit 457413..458687 Hydrogenobaculum sp. Y04AAS1 6743315 YP_002121185.1 CDS HY04AAS1_0520 NC_011126.1 458699 458920 D KEGG: aeh:Mlg_2741 hypothetical protein; hypothetical protein 458699..458920 Hydrogenobaculum sp. Y04AAS1 6743316 YP_002121186.1 CDS HY04AAS1_0521 NC_011126.1 458914 459288 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: aae:aq_813 holo-[acyl-carrier protein] synthase; holo-acyl-carrier-protein synthase 458914..459288 Hydrogenobaculum sp. Y04AAS1 6743317 YP_002121187.1 CDS HY04AAS1_0522 NC_011126.1 459282 460544 D TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: aae:aq_1208 diaminopimelate decarboxylase; diaminopimelate decarboxylase 459282..460544 Hydrogenobaculum sp. Y04AAS1 6743318 YP_002121188.1 CDS HY04AAS1_0523 NC_011126.1 460572 461060 D PFAM: 4-vinyl reductase 4VR; KEGG: aae:aq_1655 hypothetical protein; 4-vinyl reductase 4VR 460572..461060 Hydrogenobaculum sp. Y04AAS1 6743319 YP_002121189.1 CDS HY04AAS1_0524 NC_011126.1 461062 462327 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 461062..462327 Hydrogenobaculum sp. Y04AAS1 6743320 YP_002121190.1 CDS HY04AAS1_0525 NC_011126.1 462382 463752 D PFAM: FAD linked oxidase domain protein; KEGG: aae:aq_1769 D-lactate dehydrogenase; FAD linked oxidase domain-containing protein 462382..463752 Hydrogenobaculum sp. Y04AAS1 6743321 YP_002121191.1 CDS HY04AAS1_0526 NC_011126.1 463745 464272 R KEGG: mag:amb1922 hypothetical protein; hypothetical protein complement(463745..464272) Hydrogenobaculum sp. Y04AAS1 6743322 YP_002121192.1 CDS HY04AAS1_0527 NC_011126.1 464315 465523 R PFAM: type II secretion system protein; KEGG: aae:aq_747 fimbrial assembly protein PilC; type II secretion system protein complement(464315..465523) Hydrogenobaculum sp. Y04AAS1 6743323 YP_002121193.1 CDS HY04AAS1_0528 NC_011126.1 465523 466341 R KEGG: sah:SaurJH1_1113 bacteriocin-associated integral membrane protein; hypothetical protein complement(465523..466341) Hydrogenobaculum sp. Y04AAS1 6743324 YP_002121194.1 CDS HY04AAS1_0529 NC_011126.1 466338 468299 R PFAM: type II and III secretion system protein; KEGG: aae:aq_585 type IV pilus assembly protein PilQ; type II and III secretion system protein complement(466338..468299) Hydrogenobaculum sp. Y04AAS1 6743325 YP_002121195.1 CDS HY04AAS1_0530 NC_011126.1 468289 468600 R hypothetical protein complement(468289..468600) Hydrogenobaculum sp. Y04AAS1 6743326 YP_002121196.1 CDS HY04AAS1_0531 NC_011126.1 468584 469345 R KEGG: pfa:PFB0375w hypothetical protein; hypothetical protein complement(468584..469345) Hydrogenobaculum sp. Y04AAS1 6743327 YP_002121197.1 CDS HY04AAS1_0532 NC_011126.1 469335 470138 R hypothetical protein complement(469335..470138) Hydrogenobaculum sp. Y04AAS1 6743328 YP_002121198.1 CDS HY04AAS1_0533 NC_011126.1 470225 470383 R KEGG: tde:TDE2498 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(470225..470383) Hydrogenobaculum sp. Y04AAS1 6743329 YP_002121199.1 CDS HY04AAS1_0534 NC_011126.1 470411 470647 R hypothetical protein complement(470411..470647) Hydrogenobaculum sp. Y04AAS1 6743330 YP_002121200.1 CDS HY04AAS1_0535 NC_011126.1 470657 471199 R KEGG: abu:Abu_1707 site-specific recombinase, phage integrase family; hypothetical protein complement(470657..471199) Hydrogenobaculum sp. Y04AAS1 6743331 YP_002121201.1 CDS HY04AAS1_0536 NC_011126.1 471201 471293 R hypothetical protein complement(471201..471293) Hydrogenobaculum sp. Y04AAS1 6743332 YP_002121202.1 CDS HY04AAS1_0537 NC_011126.1 471277 472065 R TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpe:Tpen_1455 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta complement(471277..472065) Hydrogenobaculum sp. Y04AAS1 6743333 YP_002121203.1 CDS HY04AAS1_0538 NC_011126.1 472112 473230 D PFAM: aminotransferase class I and II; KEGG: aae:aq_626 8-amino-7-oxononanoate synthase; 8-amino-7-oxononanoate synthase 472112..473230 Hydrogenobaculum sp. Y04AAS1 6743334 YP_002121204.1 CDS HY04AAS1_0539 NC_011126.1 473319 473606 D hypothetical protein 473319..473606 Hydrogenobaculum sp. Y04AAS1 6743335 YP_002121205.1 CDS HY04AAS1_0540 NC_011126.1 473772 475037 D KEGG: mbn:Mboo_1434 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 473772..475037 Hydrogenobaculum sp. Y04AAS1 6743336 YP_002121206.1 CDS HY04AAS1_0541 NC_011126.1 475150 476085 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aae:aq_481 peptide transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(475150..476085) Hydrogenobaculum sp. Y04AAS1 6743337 YP_002121207.1 CDS HY04AAS1_0542 NC_011126.1 476085 477842 R PFAM: DNA-directed DNA polymerase; 3'-5' exonuclease; KEGG: aae:aq_1967 DNA polymerase I (PolI); DNA-directed DNA polymerase complement(476085..477842) Hydrogenobaculum sp. Y04AAS1 6743338 YP_002121208.1 CDS HY04AAS1_0543 NC_011126.1 477839 479209 R PFAM: amino acid permease-associated region; KEGG: sul:SYO3AOP1_1274 amino acid permease-associated region; amino acid permease-associated protein complement(477839..479209) Hydrogenobaculum sp. Y04AAS1 6743339 YP_002121209.1 CDS HY04AAS1_0544 NC_011126.1 479276 480709 D PFAM: acyl-CoA reductase; Aldehyde Dehydrogenase_; KEGG: aae:aq_186 aldehyde dehydrogenase; adehyde dehydrogenase 479276..480709 Hydrogenobaculum sp. Y04AAS1 6743340 YP_002121210.1 CDS HY04AAS1_0545 NC_011126.1 480701 481669 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(480701..481669) Hydrogenobaculum sp. Y04AAS1 6743341 YP_002121211.1 CDS HY04AAS1_0546 NC_011126.1 481740 482471 D KEGG: tte:TTE1701 hydrogenase 4 subunit D; hypothetical protein 481740..482471 Hydrogenobaculum sp. Y04AAS1 6743342 YP_002121212.1 CDS HY04AAS1_0547 NC_011126.1 482465 485350 D KEGG: aae:aq_863 hypothetical protein; hypothetical protein 482465..485350 Hydrogenobaculum sp. Y04AAS1 6743343 YP_002121213.1 CDS HY04AAS1_0548 NC_011126.1 485352 485837 R KEGG: aae:aq_162 folate biosynthesis 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(485352..485837) Hydrogenobaculum sp. Y04AAS1 6743344 YP_002121214.1 CDS HY04AAS1_0549 NC_011126.1 485834 487111 R PFAM: amidohydrolase; KEGG: aae:aq_587 N-ethylammeline chlorohydrolase; amidohydrolase complement(485834..487111) Hydrogenobaculum sp. Y04AAS1 6743345 YP_002121215.1 CDS ribH NC_011126.1 487114 487569 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(487114..487569) Hydrogenobaculum sp. Y04AAS1 6743346 YP_002121216.1 CDS HY04AAS1_0551 NC_011126.1 487593 487994 R KEGG: aae:aq_1466 protein; hypothetical protein complement(487593..487994) Hydrogenobaculum sp. Y04AAS1 6743347 YP_002121217.1 CDS HY04AAS1_0552 NC_011126.1 487996 488931 R KEGG: aae:aq_910 DNA replication protein DnaC; DNA replication protein DnaC complement(487996..488931) Hydrogenobaculum sp. Y04AAS1 6743348 YP_002121218.1 CDS HY04AAS1_0553 NC_011126.1 488964 490448 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sul:SYO3AOP1_1378 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(488964..490448) Hydrogenobaculum sp. Y04AAS1 6743349 YP_002121219.1 CDS HY04AAS1_0554 NC_011126.1 490445 492031 R PFAM: phosphoribosylglycinamide synthetase; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: aae:aq_1172 carbamoyl-phosphate synthase large chain; Carbamoyl-phosphate synthase L chain ATP-binding complement(490445..492031) Hydrogenobaculum sp. Y04AAS1 6743350 YP_002121220.1 CDS HY04AAS1_0555 NC_011126.1 492076 493566 D PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: aae:aq_582 anthranilate synthase component I; Anthranilate synthase 492076..493566 Hydrogenobaculum sp. Y04AAS1 6743351 YP_002121221.1 CDS HY04AAS1_0556 NC_011126.1 493556 494155 D KEGG: aae:aq_578 serine/threonine protein kinase; serine/threonine protein kinase 493556..494155 Hydrogenobaculum sp. Y04AAS1 6743352 YP_002121222.1 CDS HY04AAS1_0557 NC_011126.1 494160 494651 R PFAM: Sterol-binding domain protein; KEGG: aae:aq_026 hypothetical protein; Sterol-binding domain-containing protein complement(494160..494651) Hydrogenobaculum sp. Y04AAS1 6743353 YP_002121223.1 CDS HY04AAS1_0558 NC_011126.1 494805 495017 D TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: aae:aq_932a phosphoribosylformylglycinamidine (FGAM) synthase, PurS component; phosphoribosylformylglycinamidine synthase PurS 494805..495017 Hydrogenobaculum sp. Y04AAS1 6743354 YP_002121224.1 CDS HY04AAS1_0559 NC_011126.1 495014 495673 D KEGG: aae:aq_1105 phosphoribosyl formylglycinamidine synthase I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; phosphoribosylformylglycinamidine synthase I 495014..495673 Hydrogenobaculum sp. Y04AAS1 6743355 YP_002121225.1 CDS HY04AAS1_0560 NC_011126.1 495689 498112 D KEGG: aae:aq_242 Lon protease; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 495689..498112 Hydrogenobaculum sp. Y04AAS1 6743356 YP_002121226.1 CDS HY04AAS1_0561 NC_011126.1 498109 498642 D TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: aae:aq_1607 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 498109..498642 Hydrogenobaculum sp. Y04AAS1 6743357 YP_002121227.1 CDS HY04AAS1_0562 NC_011126.1 498620 499162 R PFAM: Lytic transglycosylase catalytic; KEGG: sul:SYO3AOP1_0253 lytic transglycosylase catalytic; Lytic transglycosylase complement(498620..499162) Hydrogenobaculum sp. Y04AAS1 6743358 YP_002121228.1 CDS HY04AAS1_0563 NC_011126.1 499171 501711 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nis:NIS_0196 signal transduction response regulator; diguanylate cyclase/phosphodiesterase complement(499171..501711) Hydrogenobaculum sp. Y04AAS1 6743359 YP_002121229.1 CDS hisS NC_011126.1 501808 503028 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(501808..503028) Hydrogenobaculum sp. Y04AAS1 6743360 YP_002121230.1 CDS HY04AAS1_0565 NC_011126.1 503030 504376 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_835 NADH oxidase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(503030..504376) Hydrogenobaculum sp. Y04AAS1 6743361 YP_002121231.1 CDS HY04AAS1_0566 NC_011126.1 504373 505809 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(504373..505809) Hydrogenobaculum sp. Y04AAS1 6743362 YP_002121232.1 CDS HY04AAS1_0567 NC_011126.1 505922 507133 R PFAM: aminotransferase class I and II; KEGG: aae:aq_2094 aminotransferase; class I and II aminotransferase complement(505922..507133) Hydrogenobaculum sp. Y04AAS1 6743363 YP_002121233.1 CDS HY04AAS1_0568 NC_011126.1 507126 507482 R PFAM: zinc finger DksA/TraR C4-type; KEGG: aae:aq_2095 DnaK suppressor protein; TraR/DksA family transcriptional regulator complement(507126..507482) Hydrogenobaculum sp. Y04AAS1 6743364 YP_002121234.1 CDS HY04AAS1_0569 NC_011126.1 507519 508970 R PFAM: chemotaxis sensory transducer; KEGG: sul:SYO3AOP1_0921 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(507519..508970) Hydrogenobaculum sp. Y04AAS1 6743365 YP_002121235.1 CDS HY04AAS1_0570 NC_011126.1 508995 509648 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: aae:aq_540 multiple antibiotic resistance protein; multiple antibiotic resistance (MarC)-like protein complement(508995..509648) Hydrogenobaculum sp. Y04AAS1 6743366 YP_002121236.1 CDS HY04AAS1_0571 NC_011126.1 509621 510193 R hypothetical protein complement(509621..510193) Hydrogenobaculum sp. Y04AAS1 6743367 YP_002121237.1 CDS HY04AAS1_0572 NC_011126.1 510183 513284 R PFAM: acriflavin resistance protein; KEGG: sul:SYO3AOP1_1132 acriflavin resistance protein; acriflavin resistance protein complement(510183..513284) Hydrogenobaculum sp. Y04AAS1 6743368 YP_002121238.1 CDS HY04AAS1_0573 NC_011126.1 513281 514450 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sul:SYO3AOP1_1133 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(513281..514450) Hydrogenobaculum sp. Y04AAS1 6743369 YP_002121239.1 CDS HY04AAS1_0574 NC_011126.1 514447 515730 R PFAM: outer membrane efflux protein; KEGG: gme:Gmet_3465 outer membrane efflux protein; outer membrane efflux protein complement(514447..515730) Hydrogenobaculum sp. Y04AAS1 6743370 YP_002121240.1 CDS HY04AAS1_0575 NC_011126.1 515714 516115 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: sul:SYO3AOP1_0933 protein tyrosine phosphatase; protein tyrosine phosphatase complement(515714..516115) Hydrogenobaculum sp. Y04AAS1 6743371 YP_002121241.1 CDS HY04AAS1_0576 NC_011126.1 516112 516438 R PFAM: regulatory protein ArsR; KEGG: aae:aq_1387 transcriptional regulator (ArsR family); ArsR family transcriptional regulator complement(516112..516438) Hydrogenobaculum sp. Y04AAS1 6743372 YP_002121242.1 CDS HY04AAS1_0577 NC_011126.1 516435 516713 R KEGG: tdn:Tmden_1057 hypothetical protein; hypothetical protein complement(516435..516713) Hydrogenobaculum sp. Y04AAS1 6743373 YP_002121243.1 CDS HY04AAS1_0578 NC_011126.1 516905 517060 D hypothetical protein 516905..517060 Hydrogenobaculum sp. Y04AAS1 6743374 YP_002121244.1 CDS HY04AAS1_0579 NC_011126.1 517063 517794 D KEGG: pho:PH1420 hypothetical protein; hypothetical protein 517063..517794 Hydrogenobaculum sp. Y04AAS1 6743375 YP_002121245.1 CDS HY04AAS1_0580 NC_011126.1 517921 519132 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; KEGG: aae:aq_1737 cyclopropane-fatty-acyl-phospholipid synthase; Cyclopropane-fatty-acyl-phospholipid synthase 517921..519132 Hydrogenobaculum sp. Y04AAS1 6743376 YP_002121246.1 CDS HY04AAS1_0581 NC_011126.1 519157 519528 D KEGG: sul:SYO3AOP1_1141 hypothetical protein; hypothetical protein 519157..519528 Hydrogenobaculum sp. Y04AAS1 6743377 YP_002121247.1 CDS HY04AAS1_0582 NC_011126.1 519525 520958 R KEGG: sul:SYO3AOP1_0383 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(519525..520958) Hydrogenobaculum sp. Y04AAS1 6743378 YP_002121248.1 CDS HY04AAS1_0583 NC_011126.1 520981 522369 R PFAM: Chloride channel core; KEGG: cma:Cmaq_0176 chloride channel core; chloride channel core protein complement(520981..522369) Hydrogenobaculum sp. Y04AAS1 6743379 YP_002121249.1 CDS HY04AAS1_0584 NC_011126.1 522362 522661 R PFAM: protein of unknown function DUF190; KEGG: mae:Maeo_0017 protein of unknown function DUF190; hypothetical protein complement(522362..522661) Hydrogenobaculum sp. Y04AAS1 6743380 YP_002121250.1 CDS HY04AAS1_0585 NC_011126.1 522658 522969 R PFAM: protein of unknown function DUF190; KEGG: mac:MA3935 hypothetical protein; hypothetical protein complement(522658..522969) Hydrogenobaculum sp. Y04AAS1 6743381 YP_002121251.1 CDS HY04AAS1_0586 NC_011126.1 522966 523334 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: aae:aq_449 integral membrane protein possibly involved in chromosome condensation; CrcB protein complement(522966..523334) Hydrogenobaculum sp. Y04AAS1 6743382 YP_002121252.1 CDS HY04AAS1_0587 NC_011126.1 523551 524900 D TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aae:aq_1360 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate/alanine ligase 523551..524900 Hydrogenobaculum sp. Y04AAS1 6743383 YP_002121253.1 CDS HY04AAS1_0588 NC_011126.1 524887 525654 D PFAM: glycosyl transferase family 2; KEGG: sul:SYO3AOP1_0681 glycosyl transferase family 2; family 2 glycosyl transferase 524887..525654 Hydrogenobaculum sp. Y04AAS1 6743384 YP_002121254.1 CDS HY04AAS1_0589 NC_011126.1 525657 526700 R PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: aae:aq_1735 chaperone DnaJ; heat shock protein DnaJ domain-containing protein complement(525657..526700) Hydrogenobaculum sp. Y04AAS1 6743385 YP_002121255.1 CDS HY04AAS1_0590 NC_011126.1 526687 527049 R KEGG: csc:Csac_0596 hypothetical protein; hypothetical protein complement(526687..527049) Hydrogenobaculum sp. Y04AAS1 6743386 YP_002121256.1 CDS HY04AAS1_0591 NC_011126.1 527062 528090 R PFAM: flagellar P-ring protein; KEGG: aae:aq_1713 flagellar P-ring protein FlgI; flagellar P-ring protein complement(527062..528090) Hydrogenobaculum sp. Y04AAS1 6743387 YP_002121257.1 CDS HY04AAS1_0592 NC_011126.1 528148 529263 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_1958 hypothetical protein; Radical SAM domain-containing protein complement(528148..529263) Hydrogenobaculum sp. Y04AAS1 6743388 YP_002121258.1 CDS HY04AAS1_0593 NC_011126.1 529354 530889 R KEGG: aae:aq_777 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase complement(529354..530889) Hydrogenobaculum sp. Y04AAS1 6743389 YP_002121259.1 CDS HY04AAS1_0594 NC_011126.1 530876 531850 R PFAM: protein of unknown function UPF0052 and CofD; KEGG: aae:aq_778 hypothetical protein; hypothetical protein complement(530876..531850) Hydrogenobaculum sp. Y04AAS1 6743390 YP_002121260.1 CDS HY04AAS1_0595 NC_011126.1 531853 532839 R KEGG: aae:aq_2114 methylthioribose-1-phosphate isomerase; TIGRFAM: translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; translation initiation factor, aIF-2BI family complement(531853..532839) Hydrogenobaculum sp. Y04AAS1 6743391 YP_002121261.1 CDS HY04AAS1_0596 NC_011126.1 532833 533714 R KEGG: sul:SYO3AOP1_1064 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; homoserine kinase complement(532833..533714) Hydrogenobaculum sp. Y04AAS1 6743392 YP_002121262.1 CDS HY04AAS1_0597 NC_011126.1 533886 534281 D KEGG: afu:AF0555 hypothetical protein; hypothetical protein 533886..534281 Hydrogenobaculum sp. Y04AAS1 6743393 YP_002121263.1 CDS HY04AAS1_0598 NC_011126.1 534292 534519 D PFAM: SirA family protein; KEGG: afu:AF0556 hypothetical protein; SirA family protein 534292..534519 Hydrogenobaculum sp. Y04AAS1 6743394 YP_002121264.1 CDS HY04AAS1_0599 NC_011126.1 534541 535686 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb1817 uncharacterized NAD(FAD)-dependent dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 534541..535686 Hydrogenobaculum sp. Y04AAS1 6743395 YP_002121265.1 CDS HY04AAS1_0600 NC_011126.1 535698 536558 D KEGG: sai:Saci_0333 hypothetical protein; hypothetical protein 535698..536558 Hydrogenobaculum sp. Y04AAS1 6743396 YP_002121266.1 CDS HY04AAS1_0601 NC_011126.1 536610 537212 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sul:SYO3AOP1_0432 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(536610..537212) Hydrogenobaculum sp. Y04AAS1 6743397 YP_002121267.1 CDS HY04AAS1_0602 NC_011126.1 537279 537422 R hypothetical protein complement(537279..537422) Hydrogenobaculum sp. Y04AAS1 6743398 YP_002121268.1 CDS HY04AAS1_0603 NC_011126.1 537419 538492 R KEGG: aae:aq_2151 twitching mobility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein complement(537419..538492) Hydrogenobaculum sp. Y04AAS1 6743399 YP_002121269.1 CDS HY04AAS1_0604 NC_011126.1 538513 539391 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: aae:aq_1137 hypothetical protein; integrase family protein complement(538513..539391) Hydrogenobaculum sp. Y04AAS1 6743400 YP_002121270.1 CDS HY04AAS1_0605 NC_011126.1 539388 540386 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(539388..540386) Hydrogenobaculum sp. Y04AAS1 6743401 YP_002121271.1 CDS HY04AAS1_0606 NC_011126.1 540389 542356 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(540389..542356) Hydrogenobaculum sp. Y04AAS1 6743402 YP_002121272.1 CDS HY04AAS1_0607 NC_011126.1 542375 543520 R PFAM: protein of unknown function DUF100; KEGG: aae:aq_1790 hypothetical protein; hypothetical protein complement(542375..543520) Hydrogenobaculum sp. Y04AAS1 6743403 YP_002121273.1 CDS HY04AAS1_0608 NC_011126.1 543603 544130 D KEGG: sul:SYO3AOP1_1489 hypothetical protein; hypothetical protein 543603..544130 Hydrogenobaculum sp. Y04AAS1 6743404 YP_002121274.1 CDS HY04AAS1_0609 NC_011126.1 544135 544482 R hypothetical protein complement(544135..544482) Hydrogenobaculum sp. Y04AAS1 6743405 YP_002121275.1 CDS HY04AAS1_0610 NC_011126.1 544479 545702 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: aae:aq_1229 transporter (major facilitator family); major facilitator superfamily protein complement(544479..545702) Hydrogenobaculum sp. Y04AAS1 6743406 YP_002121276.1 CDS HY04AAS1_0611 NC_011126.1 545913 546791 D TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: aae:aq_1705 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 545913..546791 Hydrogenobaculum sp. Y04AAS1 6743408 YP_002121277.1 CDS HY04AAS1_0612 NC_011126.1 546778 548673 D KEGG: cau:Caur_1161 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan branching enzyme 546778..548673 Hydrogenobaculum sp. Y04AAS1 6743409 YP_002121278.1 CDS HY04AAS1_0613 NC_011126.1 548716 548847 D hypothetical protein 548716..548847 Hydrogenobaculum sp. Y04AAS1 6743410 YP_002121279.1 CDS HY04AAS1_0614 NC_011126.1 548844 550235 R KEGG: aae:aq_920 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; Tetratricopeptide domain protein; signal recognition particle-docking protein FtsY complement(548844..550235) Hydrogenobaculum sp. Y04AAS1 6743411 YP_002121280.1 CDS HY04AAS1_0615 NC_011126.1 550271 550690 R PFAM: ferric-uptake regulator; KEGG: pth:PTH_0045 Fe2+/Zn2+ uptake regulation proteins; Fur family ferric uptake regulator complement(550271..550690) Hydrogenobaculum sp. Y04AAS1 6743412 YP_002121281.1 CDS HY04AAS1_0616 NC_011126.1 550856 551218 D hypothetical protein 550856..551218 Hydrogenobaculum sp. Y04AAS1 6743413 YP_002121282.1 CDS HY04AAS1_0617 NC_011126.1 551215 551325 D hypothetical protein 551215..551325 Hydrogenobaculum sp. Y04AAS1 6743414 YP_002121283.1 CDS HY04AAS1_0618 NC_011126.1 551347 552366 D KEGG: ehi:EHI_173410 mucin-2 precursor; hypothetical protein 551347..552366 Hydrogenobaculum sp. Y04AAS1 6743415 YP_002121284.1 CDS HY04AAS1_0619 NC_011126.1 552746 554767 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aae:aq_529 outer membrane protein c; TonB-dependent receptor 552746..554767 Hydrogenobaculum sp. Y04AAS1 6743417 YP_002121285.1 CDS HY04AAS1_0620 NC_011126.1 554868 555179 D PFAM: regulatory protein ArsR; KEGG: sul:SYO3AOP1_0374 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 554868..555179 Hydrogenobaculum sp. Y04AAS1 6743418 YP_002121286.1 CDS HY04AAS1_0621 NC_011126.1 555160 555486 D TIGRFAM: thioredoxin; PFAM: Redoxin domain protein; Thioredoxin domain; KEGG: aae:aq_1916 thioredoxin; thioredoxin 555160..555486 Hydrogenobaculum sp. Y04AAS1 6743419 YP_002121287.1 CDS HY04AAS1_0622 NC_011126.1 555483 556421 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; FAD dependent oxidoreductase; KEGG: tte:TTE1881 thioredoxin reductase; thioredoxin reductase 555483..556421 Hydrogenobaculum sp. Y04AAS1 6743420 YP_002121288.1 CDS HY04AAS1_0623 NC_011126.1 556428 557486 D PFAM: type IV pilus assembly PilZ; KEGG: aae:aq_1917 protein; type IV pilus assembly PilZ 556428..557486 Hydrogenobaculum sp. Y04AAS1 6743421 YP_002121289.1 CDS HY04AAS1_0624 NC_011126.1 557483 558304 D PFAM: oxidoreductase domain protein; KEGG: aae:aq_440 hypothetical protein; oxidoreductase domain-containing protein 557483..558304 Hydrogenobaculum sp. Y04AAS1 6743422 YP_002121290.1 CDS HY04AAS1_0625 NC_011126.1 558285 559439 D PFAM: RNA binding S1 domain protein; KEGG: aae:aq_1275 cytoplasmic axial filament protein; RNA binding S1 domain-containing protein 558285..559439 Hydrogenobaculum sp. Y04AAS1 6743423 YP_002121291.1 CDS HY04AAS1_0626 NC_011126.1 559485 560723 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 559485..560723 Hydrogenobaculum sp. Y04AAS1 6743424 YP_002121292.1 CDS HY04AAS1_0627 NC_011126.1 560725 560823 D hypothetical protein 560725..560823 Hydrogenobaculum sp. Y04AAS1 6743425 YP_002121293.1 CDS HY04AAS1_0628 NC_011126.1 560828 561604 D PFAM: ribonuclease BN; KEGG: aae:aq_453 protein; ribonuclease BN 560828..561604 Hydrogenobaculum sp. Y04AAS1 6743426 YP_002121294.1 CDS HY04AAS1_0629 NC_011126.1 561646 561945 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: aae:aq_357a anti sigma factor; anti-sigma-28 factor FlgM 561646..561945 Hydrogenobaculum sp. Y04AAS1 6743427 YP_002121295.1 CDS HY04AAS1_0630 NC_011126.1 562031 563458 R PFAM: Chloride channel core; KEGG: pla:Plav_2437 chloride channel core; chloride channel core protein complement(562031..563458) Hydrogenobaculum sp. Y04AAS1 6743429 YP_002121296.1 CDS HY04AAS1_0631 NC_011126.1 563496 565355 D catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 563496..565355 Hydrogenobaculum sp. Y04AAS1 6743430 YP_002121297.1 CDS HY04AAS1_0632 NC_011126.1 565348 565962 D KEGG: aae:aq_1613 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase 565348..565962 Hydrogenobaculum sp. Y04AAS1 6743431 YP_002121298.1 CDS HY04AAS1_0633 NC_011126.1 565972 566706 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sul:SYO3AOP1_0834 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 565972..566706 Hydrogenobaculum sp. Y04AAS1 6743432 YP_002121299.1 CDS HY04AAS1_0634 NC_011126.1 566712 567527 D PFAM: OmpA/MotB domain protein; KEGG: sul:SYO3AOP1_0835 OmpA/MotB domain protein; OmpA/MotB domain-containing protein 566712..567527 Hydrogenobaculum sp. Y04AAS1 6743433 YP_002121300.1 CDS HY04AAS1_0635 NC_011126.1 567557 569257 D KEGG: aae:aq_594 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 567557..569257 Hydrogenobaculum sp. Y04AAS1 6743434 YP_002121301.1 CDS HY04AAS1_0636 NC_011126.1 569257 571584 D TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aae:aq_1300 outer membrane protein; outer membrane protein assembly complex, YaeT protein 569257..571584 Hydrogenobaculum sp. Y04AAS1 6743435 YP_002121302.1 CDS HY04AAS1_0637 NC_011126.1 571720 572898 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 571720..572898 Hydrogenobaculum sp. Y04AAS1 6743437 YP_002121303.1 CDS HY04AAS1_0638 NC_011126.1 572895 574205 D TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sul:SYO3AOP1_1757 nucleotide sugar dehydrogenase; nucleotide sugar dehydrogenase 572895..574205 Hydrogenobaculum sp. Y04AAS1 6743438 YP_002121304.1 CDS HY04AAS1_0639 NC_011126.1 574205 574624 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: aae:aq_133 transcription termination NusB; NusB antitermination factor 574205..574624 Hydrogenobaculum sp. Y04AAS1 6743439 YP_002121305.1 CDS HY04AAS1_0640 NC_011126.1 574617 575303 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: aae:aq_1771 uroporphyrinogen-III synthase; Uroporphyrinogen III synthase HEM4 574617..575303 Hydrogenobaculum sp. Y04AAS1 6743440 YP_002121306.1 CDS HY04AAS1_0641 NC_011126.1 575323 576198 D PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: aae:aq_1772 UDP-3-0-acyl N-acetylglcosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase 575323..576198 Hydrogenobaculum sp. Y04AAS1 6743441 YP_002121307.1 CDS HY04AAS1_0642 NC_011126.1 576262 577089 D KEGG: aae:aq_2093 thiol:disulfide interchange protein; thiol:disulfide interchange protein 576262..577089 Hydrogenobaculum sp. Y04AAS1 6743442 YP_002121308.1 CDS HY04AAS1_0643 NC_011126.1 577118 578257 D PFAM: histone deacetylase superfamily; KEGG: aae:aq_1023 acetoin utilization protein; histone deacetylase superfamily 577118..578257 Hydrogenobaculum sp. Y04AAS1 6743443 YP_002121309.1 CDS HY04AAS1_0644 NC_011126.1 578310 579041 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: aae:aq_490 transcriptional regulator (Crp/Fnr family); Crp/Fnr family transcriptional regulator 578310..579041 Hydrogenobaculum sp. Y04AAS1 6743444 YP_002121310.1 CDS HY04AAS1_0645 NC_011126.1 579066 580589 D TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; ExsB family protein; KEGG: aae:aq_236 GMP synthase; GMP synthase, large subunit 579066..580589 Hydrogenobaculum sp. Y04AAS1 6743445 YP_002121311.1 CDS HY04AAS1_0646 NC_011126.1 580594 581316 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 580594..581316 Hydrogenobaculum sp. Y04AAS1 6743446 YP_002121312.1 CDS HY04AAS1_0647 NC_011126.1 581313 581753 D TIGRFAM: DNA ligase D, 3'-phosphoesterase domain protein; KEGG: mma:MM_0209 hypothetical protein; DNA ligase D, 3'-phosphoesterase domain-containing protein 581313..581753 Hydrogenobaculum sp. Y04AAS1 6743447 YP_002121313.1 CDS HY04AAS1_0648 NC_011126.1 581794 582792 D PFAM: flagellar motor switch protein FliG; KEGG: aae:aq_653 flagellar switch protein FliG; flagellar motor switch protein FliG 581794..582792 Hydrogenobaculum sp. Y04AAS1 6743448 YP_002121314.1 CDS HY04AAS1_0649 NC_011126.1 582785 583534 D KEGG: mja:MJ1643 chromosome segretation protein (smc1); hypothetical protein 582785..583534 Hydrogenobaculum sp. Y04AAS1 6743449 YP_002121315.1 CDS HY04AAS1_0650 NC_011126.1 583500 584777 D KEGG: aae:aq_1595 flagellar export protein; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase 583500..584777 Hydrogenobaculum sp. Y04AAS1 6743450 YP_002121316.1 CDS HY04AAS1_0651 NC_011126.1 584788 585510 D KEGG: aae:aq_1858 flagellar hook assembly protein; flagellar hook assembly protein 584788..585510 Hydrogenobaculum sp. Y04AAS1 6743451 YP_002121317.1 CDS HY04AAS1_0652 NC_011126.1 585522 587273 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: nis:NIS_0628 flagellar basal body and hook protein FlgE; hypothetical protein 585522..587273 Hydrogenobaculum sp. Y04AAS1 6743452 YP_002121318.1 CDS HY04AAS1_0653 NC_011126.1 587285 587770 D PFAM: flagellar basal body-associated protein FliL; KEGG: aae:aq_1860 flagellar biosynthesis FliL; flagellar basal body-associated protein FliL 587285..587770 Hydrogenobaculum sp. Y04AAS1 6743453 YP_002121319.1 CDS HY04AAS1_0654 NC_011126.1 587775 588047 D hypothetical protein 587775..588047 Hydrogenobaculum sp. Y04AAS1 6743454 YP_002121320.1 CDS fliP NC_011126.1 588025 588783 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 588025..588783 Hydrogenobaculum sp. Y04AAS1 6743455 YP_002121321.1 CDS HY04AAS1_0656 NC_011126.1 588780 589049 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: aae:aq_1962 flagellar biosynthesis protein FliQ; flagellar biosynthetic protein FliQ 588780..589049 Hydrogenobaculum sp. Y04AAS1 6743456 YP_002121322.1 CDS HY04AAS1_0657 NC_011126.1 589051 589827 D PFAM: type III secretion system inner membrane R protein; KEGG: aae:aq_1961 flagellar biosynthetic protein FliR; type III secretion system inner membrane R protein 589051..589827 Hydrogenobaculum sp. Y04AAS1 6743457 YP_002121323.1 CDS HY04AAS1_0658 NC_011126.1 589811 590872 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: aae:aq_2014 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 589811..590872 Hydrogenobaculum sp. Y04AAS1 6743458 YP_002121324.1 CDS HY04AAS1_0659 NC_011126.1 590869 591507 D PFAM: Radical SAM domain protein; KEGG: aae:aq_2035 hypothetical protein; Radical SAM domain-containing protein 590869..591507 Hydrogenobaculum sp. Y04AAS1 6743459 YP_002121325.1 CDS HY04AAS1_0660 NC_011126.1 591507 591968 D PFAM: ribonuclease H; KEGG: nis:NIS_0214 ribonuclease HI; Ribonuclease H 591507..591968 Hydrogenobaculum sp. Y04AAS1 6743460 YP_002121326.1 CDS HY04AAS1_0661 NC_011126.1 591940 592287 R hypothetical protein complement(591940..592287) Hydrogenobaculum sp. Y04AAS1 6743461 YP_002121327.1 CDS HY04AAS1_0662 NC_011126.1 592294 592440 R hypothetical protein complement(592294..592440) Hydrogenobaculum sp. Y04AAS1 6743462 YP_002121328.1 CDS HY04AAS1_0663 NC_011126.1 592442 592582 R hypothetical protein complement(592442..592582) Hydrogenobaculum sp. Y04AAS1 6743463 YP_002121329.1 CDS HY04AAS1_0664 NC_011126.1 592575 592736 R hypothetical protein complement(592575..592736) Hydrogenobaculum sp. Y04AAS1 6743464 YP_002121330.1 CDS HY04AAS1_0665 NC_011126.1 592902 594260 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mar:MAE_26720 tetratricopeptide protein; hypothetical protein complement(592902..594260) Hydrogenobaculum sp. Y04AAS1 6743465 YP_002121331.1 CDS HY04AAS1_0666 NC_011126.1 594280 595110 R KEGG: sul:SYO3AOP1_0642 polyferredoxin-like protein; polyferredoxin-like protein complement(594280..595110) Hydrogenobaculum sp. Y04AAS1 6743466 YP_002121332.1 CDS HY04AAS1_0667 NC_011126.1 595205 595603 R KEGG: sul:SYO3AOP1_1110 hypothetical protein; hypothetical protein complement(595205..595603) Hydrogenobaculum sp. Y04AAS1 6743467 YP_002121333.1 CDS HY04AAS1_0668 NC_011126.1 595652 596566 R PFAM: glycosyl transferase family 9; KEGG: aae:aq_1543 ADP-heptose:LPS heptosyltransferase; glycosyl transferase family 9 complement(595652..596566) Hydrogenobaculum sp. Y04AAS1 6743468 YP_002121334.1 CDS HY04AAS1_0669 NC_011126.1 596559 596780 R KEGG: aae:aq_1106a molybdopterin converting factor, small subunit; molybdopterin converting factor, small subunit complement(596559..596780) Hydrogenobaculum sp. Y04AAS1 6743469 YP_002121335.1 CDS gltX NC_011126.1 596777 598171 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(596777..598171) Hydrogenobaculum sp. Y04AAS1 6743470 YP_002121336.1 CDS HY04AAS1_0671 NC_011126.1 598220 598999 D KEGG: dps:DP0721 hypothetical protein; hypothetical protein 598220..598999 Hydrogenobaculum sp. Y04AAS1 6743471 YP_002121337.1 CDS HY04AAS1_0672 NC_011126.1 599080 602028 D PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: aae:aq_1672 ATPase subunit of ATP-dependent protease; ATPase AAA-2 domain-containing protein 599080..602028 Hydrogenobaculum sp. Y04AAS1 6743472 YP_002121338.1 CDS HY04AAS1_0673 NC_011126.1 602086 603276 D PFAM: peptidase U32; KEGG: sul:SYO3AOP1_1234 peptidase U32; peptidase U32 602086..603276 Hydrogenobaculum sp. Y04AAS1 6743473 YP_002121339.1 CDS proA NC_011126.1 603290 604615 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 603290..604615 Hydrogenobaculum sp. Y04AAS1 6743474 YP_002121340.1 CDS HY04AAS1_0675 NC_011126.1 604617 605684 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: aae:aq_326 3-deoxy-D-manno-2-octulosonic acid transferase (KDO transferase); Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein complement(604617..605684) Hydrogenobaculum sp. Y04AAS1 6743475 YP_002121341.1 CDS HY04AAS1_0676 NC_011126.1 605685 606782 R PFAM: Myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase GAPDH domain protein; KEGG: aae:aq_1763 myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase complement(605685..606782) Hydrogenobaculum sp. Y04AAS1 6743476 YP_002121342.1 CDS HY04AAS1_0677 NC_011126.1 606785 607678 R KEGG: aae:aq_1985 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(606785..607678) Hydrogenobaculum sp. Y04AAS1 6743477 YP_002121343.1 CDS HY04AAS1_0678 NC_011126.1 607675 609459 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sul:SYO3AOP1_0213 GTP-binding protein TypA; GTP-binding protein TypA complement(607675..609459) Hydrogenobaculum sp. Y04AAS1 6743478 YP_002121344.1 CDS rho NC_011126.1 609470 610789 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(609470..610789) Hydrogenobaculum sp. Y04AAS1 6743479 YP_002121345.1 CDS HY04AAS1_0680 NC_011126.1 610872 612188 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: aae:aq_871 thiophene and furan oxidation protein; tRNA modification GTPase TrmE complement(610872..612188) Hydrogenobaculum sp. Y04AAS1 6743480 YP_002121346.1 CDS HY04AAS1_0681 NC_011126.1 612409 612753 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: aae:aq_1857 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(612409..612753) Hydrogenobaculum sp. Y04AAS1 6743483 YP_002121347.1 CDS HY04AAS1_0682 NC_011126.1 612864 613691 R PFAM: biotin/lipoate A/B protein ligase; KEGG: aae:aq_1952 hypothetical protein; biotin/lipoate A/B protein ligase complement(612864..613691) Hydrogenobaculum sp. Y04AAS1 6743484 YP_002121348.1 CDS HY04AAS1_0683 NC_011126.1 613664 614122 R PFAM: GCN5-related N-acetyltransferase; KEGG: aae:aq_1482 hypothetical protein; GCN5-like N-acetyltransferase complement(613664..614122) Hydrogenobaculum sp. Y04AAS1 6743485 YP_002121349.1 CDS HY04AAS1_0684 NC_011126.1 614129 614383 R PFAM: regulatory protein AsnC/Lrp family; KEGG: sul:SYO3AOP1_1584 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(614129..614383) Hydrogenobaculum sp. Y04AAS1 6743486 YP_002121350.1 CDS hemA NC_011126.1 614412 615608 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(614412..615608) Hydrogenobaculum sp. Y04AAS1 6743487 YP_002121351.1 CDS HY04AAS1_0686 NC_011126.1 615598 617295 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(615598..617295) Hydrogenobaculum sp. Y04AAS1 6743488 YP_002121352.1 CDS HY04AAS1_0687 NC_011126.1 617457 620435 R KEGG: gme:Gmet_0456 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase-like; hypothetical protein complement(617457..620435) Hydrogenobaculum sp. Y04AAS1 6743490 YP_002121353.1 CDS HY04AAS1_0688 NC_011126.1 620540 620722 R hypothetical protein complement(620540..620722) Hydrogenobaculum sp. Y04AAS1 6743491 YP_002121354.1 CDS HY04AAS1_0689 NC_011126.1 620712 622466 R KEGG: mar:MAE_46380 hypothetical protein; hypothetical protein complement(620712..622466) Hydrogenobaculum sp. Y04AAS1 6743492 YP_002121355.1 CDS HY04AAS1_0690 NC_011126.1 622750 623715 R PFAM: Integrase catalytic region; KEGG: sul:SYO3AOP1_1393 integrase catalytic region; integrase catalytic subunit complement(622750..623715) Hydrogenobaculum sp. Y04AAS1 6743493 YP_002121356.1 CDS HY04AAS1_0691 NC_011126.1 624089 625120 R KEGG: aae:aq_801 sialoglycoprotease; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; metalloendopeptidase, glycoprotease family complement(624089..625120) Hydrogenobaculum sp. Y04AAS1 6743494 YP_002121357.1 CDS HY04AAS1_0692 NC_011126.1 625124 626380 R KEGG: aae:aq_797 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(625124..626380) Hydrogenobaculum sp. Y04AAS1 6743495 YP_002121358.1 CDS HY04AAS1_0693 NC_011126.1 626395 626811 R KEGG: aae:aq_796 protein; hypothetical protein complement(626395..626811) Hydrogenobaculum sp. Y04AAS1 6743496 YP_002121359.1 CDS HY04AAS1_0694 NC_011126.1 627302 628681 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: acr:Acry_3608 general substrate transporter; General substrate transporter 627302..628681 Hydrogenobaculum sp. Y04AAS1 6743498 YP_002121360.1 CDS HY04AAS1_0695 NC_011126.1 628754 629542 D PFAM: phospholipid/glycerol acyltransferase; KEGG: sul:SYO3AOP1_1139 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 628754..629542 Hydrogenobaculum sp. Y04AAS1 6743499 YP_002121361.1 CDS HY04AAS1_0696 NC_011126.1 629512 630246 D KEGG: sul:SYO3AOP1_1140 deacetylase-like protein; deacetylase-like protein 629512..630246 Hydrogenobaculum sp. Y04AAS1 6743500 YP_002121362.1 CDS HY04AAS1_0697 NC_011126.1 630288 632606 D PFAM: glycosyl transferase group 1; KEGG: glo:Glov_0604 glycosyl transferase group 1; group 1 glycosyl transferase 630288..632606 Hydrogenobaculum sp. Y04AAS1 6743501 YP_002121363.1 CDS HY04AAS1_0698 NC_011126.1 632603 633739 D PFAM: glycosyl transferase group 1; KEGG: sul:SYO3AOP1_1145 glycosyl transferase group 1; group 1 glycosyl transferase 632603..633739 Hydrogenobaculum sp. Y04AAS1 6743502 YP_002121364.1 CDS HY04AAS1_0699 NC_011126.1 633707 635608 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: aoe:Clos_0999 diguanylate cyclase/phosphodiesterase; diguanylate cyclase/phosphodiesterase complement(633707..635608) Hydrogenobaculum sp. Y04AAS1 6743503 YP_002121365.1 CDS HY04AAS1_0700 NC_011126.1 635605 636825 R KEGG: tte:TTE1908 hypothetical protein; hypothetical protein complement(635605..636825) Hydrogenobaculum sp. Y04AAS1 6743504 YP_002121366.1 CDS HY04AAS1_0701 NC_011126.1 636815 637102 R hypothetical protein complement(636815..637102) Hydrogenobaculum sp. Y04AAS1 6743505 YP_002121367.1 CDS HY04AAS1_0702 NC_011126.1 637314 639503 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sul:SYO3AOP1_0734 TonB-dependent receptor; TonB-dependent receptor 637314..639503 Hydrogenobaculum sp. Y04AAS1 6743506 YP_002121368.1 CDS HY04AAS1_0703 NC_011126.1 639604 639933 D PFAM: DNA polymerase subunit beta; KEGG: glo:Glov_3039 DNA polymerase subunit beta; DNA polymerase subunit beta 639604..639933 Hydrogenobaculum sp. Y04AAS1 6743507 YP_002121369.1 CDS HY04AAS1_0704 NC_011126.1 639923 640210 D PFAM: protein of unknown function DUF86; KEGG: gur:Gura_4166 protein of unknown function DUF86; hypothetical protein 639923..640210 Hydrogenobaculum sp. Y04AAS1 6743508 YP_002121370.1 CDS HY04AAS1_0705 NC_011126.1 640329 642728 D PFAM: TonB-dependent receptor; KEGG: acr:Acry_0295 TonB-dependent receptor; TonB-dependent receptor 640329..642728 Hydrogenobaculum sp. Y04AAS1 6743509 YP_002121371.1 CDS HY04AAS1_0706 NC_011126.1 642826 643263 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: sul:SYO3AOP1_0735 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 642826..643263 Hydrogenobaculum sp. Y04AAS1 6743510 YP_002121372.1 CDS HY04AAS1_0707 NC_011126.1 643265 643690 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sul:SYO3AOP1_0736 biopolymer transport protein ExbD/TolR; Biopolymer transport protein ExbD/TolR 643265..643690 Hydrogenobaculum sp. Y04AAS1 6743511 YP_002121373.1 CDS HY04AAS1_0708 NC_011126.1 643687 644457 D TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sul:SYO3AOP1_0737 TonB family protein; TonB family protein 643687..644457 Hydrogenobaculum sp. Y04AAS1 6743512 YP_002121374.1 CDS HY04AAS1_0709 NC_011126.1 644460 647081 D PFAM: phosphoesterase; KEGG: sus:Acid_4558 40-residue YVTN family beta-propeller repeat protein; phosphoesterase 644460..647081 Hydrogenobaculum sp. Y04AAS1 6743513 YP_002121375.1 CDS HY04AAS1_0710 NC_011126.1 647148 647513 D hypothetical protein 647148..647513 Hydrogenobaculum sp. Y04AAS1 6743514 YP_002121376.1 CDS HY04AAS1_0711 NC_011126.1 647510 647893 D hypothetical protein 647510..647893 Hydrogenobaculum sp. Y04AAS1 6743515 YP_002121377.1 CDS HY04AAS1_0712 NC_011126.1 647903 648202 D KEGG: sul:SYO3AOP1_1342 hypothetical protein; hypothetical protein 647903..648202 Hydrogenobaculum sp. Y04AAS1 6743516 YP_002121378.1 CDS HY04AAS1_0713 NC_011126.1 648215 648412 D hypothetical protein 648215..648412 Hydrogenobaculum sp. Y04AAS1 6743517 YP_002121379.1 CDS HY04AAS1_0714 NC_011126.1 648409 650505 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sul:SYO3AOP1_1344 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 648409..650505 Hydrogenobaculum sp. Y04AAS1 6743518 YP_002121380.1 CDS HY04AAS1_0715 NC_011126.1 650498 651358 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: bbt:BBta_7268 cation efflux system protein CzcD; cation diffusion facilitator family transporter 650498..651358 Hydrogenobaculum sp. Y04AAS1 6743519 YP_002121381.1 CDS HY04AAS1_0716 NC_011126.1 651379 652179 D KEGG: sul:SYO3AOP1_1138 hypothetical protein; hypothetical protein 651379..652179 Hydrogenobaculum sp. Y04AAS1 6743520 YP_002121382.1 CDS HY04AAS1_0717 NC_011126.1 652228 653958 D KEGG: gur:Gura_1227 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 652228..653958 Hydrogenobaculum sp. Y04AAS1 6743521 YP_002121383.1 CDS HY04AAS1_0718 NC_011126.1 653955 656009 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: gur:Gura_1226 K+-transporting ATPase, B subunit; K+-transporting ATPase subunit B 653955..656009 Hydrogenobaculum sp. Y04AAS1 6743522 YP_002121384.1 CDS HY04AAS1_0719 NC_011126.1 656006 656602 D PFAM: K transporting ATPase KdpC subunit; KEGG: mca:MCA2215 K+-transporting ATPase, C subunit; Potassium-transporting ATPase 656006..656602 Hydrogenobaculum sp. Y04AAS1 6743523 YP_002121385.1 CDS HY04AAS1_0720 NC_011126.1 656566 658497 D PFAM: Osmosensitive K channel His kinase sensor; KEGG: gme:Gmet_2436 osmosensitive K+ channel signal transduction histidine kinase; Osmosensitive K channel His kinase sensor 656566..658497 Hydrogenobaculum sp. Y04AAS1 6743524 YP_002121386.1 CDS HY04AAS1_0721 NC_011126.1 658500 659240 R hypothetical protein complement(658500..659240) Hydrogenobaculum sp. Y04AAS1 6743525 YP_002121387.1 CDS HY04AAS1_0722 NC_011126.1 659295 659978 D hypothetical protein 659295..659978 Hydrogenobaculum sp. Y04AAS1 6743526 YP_002121388.1 CDS HY04AAS1_0723 NC_011126.1 659966 660313 D hypothetical protein 659966..660313 Hydrogenobaculum sp. Y04AAS1 6743527 YP_002121389.1 CDS HY04AAS1_0724 NC_011126.1 660301 660927 D KEGG: pho:PH1798 chromosome assembly protein; hypothetical protein 660301..660927 Hydrogenobaculum sp. Y04AAS1 6743528 YP_002121390.1 CDS HY04AAS1_0725 NC_011126.1 660924 662390 D KEGG: bcm:Bcenmc03_5909 type IVB pilus formation outer membrane protein, R64 PilN family; Type II secretory pathway component PulD-like 660924..662390 Hydrogenobaculum sp. Y04AAS1 6743529 YP_002121391.1 CDS HY04AAS1_0726 NC_011126.1 662387 663106 D hypothetical protein 662387..663106 Hydrogenobaculum sp. Y04AAS1 6743530 YP_002121392.1 CDS HY04AAS1_0727 NC_011126.1 663113 664213 D hypothetical protein 663113..664213 Hydrogenobaculum sp. Y04AAS1 6743531 YP_002121393.1 CDS HY04AAS1_0728 NC_011126.1 664215 665195 D KEGG: cbf:CLI_1972 bacterial type II secretion system protein F; hypothetical protein 664215..665195 Hydrogenobaculum sp. Y04AAS1 6743532 YP_002121394.1 CDS HY04AAS1_0729 NC_011126.1 665249 666082 D KEGG: mmu:100040282 similar to GPI-anchored cell surface glycoprotein required for diploid pseudohyphal formation and haploid invasive growth, transcriptionally regulated by the MAPK pathway (via Ste12p and Tec1p) and the cAMP pathway (via Flo8p); hypothetical protein 665249..666082 Hydrogenobaculum sp. Y04AAS1 6743533 YP_002121395.1 CDS HY04AAS1_0730 NC_011126.1 666098 667360 D KEGG: xla:779335 E2F transcription factor 7 Pfam: E2F_TDP; hypothetical protein 666098..667360 Hydrogenobaculum sp. Y04AAS1 6743534 YP_002121396.1 CDS HY04AAS1_0731 NC_011126.1 667547 668158 D KEGG: pfh:PFHG_01528 conserved hypothetical protein; hypothetical protein 667547..668158 Hydrogenobaculum sp. Y04AAS1 6743535 YP_002121397.1 CDS HY04AAS1_0732 NC_011126.1 668315 669379 D PFAM: type II secretion system protein E; KEGG: aae:aq_745 twitching motility protein PilT; type II secretion system protein E 668315..669379 Hydrogenobaculum sp. Y04AAS1 6743536 YP_002121398.1 CDS HY04AAS1_0733 NC_011126.1 669384 669629 D hypothetical protein 669384..669629 Hydrogenobaculum sp. Y04AAS1 6743537 YP_002121399.1 CDS HY04AAS1_0734 NC_011126.1 669626 670081 R PFAM: SNARE associated Golgi protein; KEGG: aae:aq_2066 hypothetical protein; hypothetical protein complement(669626..670081) Hydrogenobaculum sp. Y04AAS1 6743538 YP_002121400.1 CDS HY04AAS1_0735 NC_011126.1 670248 670685 D PFAM: heat shock protein Hsp20; KEGG: aae:aq_1283 small heat shock protein (class I); heat shock protein Hsp20 670248..670685 Hydrogenobaculum sp. Y04AAS1 6743539 YP_002121401.1 CDS HY04AAS1_0736 NC_011126.1 670889 671524 D PFAM: nitroreductase; KEGG: nis:NIS_1849 NAD(P)H-flavin oxidoreductase; nitroreductase 670889..671524 Hydrogenobaculum sp. Y04AAS1 6743541 YP_002121402.1 CDS HY04AAS1_0737 NC_011126.1 671521 672000 D KEGG: aae:aq_1631 protein; hypothetical protein 671521..672000 Hydrogenobaculum sp. Y04AAS1 6743542 YP_002121403.1 CDS HY04AAS1_0738 NC_011126.1 671954 673462 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: aae:aq_1365 hypothetical protein; carbohydrate kinase complement(671954..673462) Hydrogenobaculum sp. Y04AAS1 6743543 YP_002121404.1 CDS pgk NC_011126.1 673459 674646 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(673459..674646) Hydrogenobaculum sp. Y04AAS1 6743544 YP_002121405.1 CDS HY04AAS1_0740 NC_011126.1 674728 675651 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: aae:aq_892 malonyl-CoA:acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 674728..675651 Hydrogenobaculum sp. Y04AAS1 6743545 YP_002121406.1 CDS HY04AAS1_0741 NC_011126.1 675648 676322 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; KEGG: aae:aq_655 fumarate reductase iron-sulfur protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 675648..676322 Hydrogenobaculum sp. Y04AAS1 6743546 YP_002121407.1 CDS HY04AAS1_0742 NC_011126.1 676337 676669 D KEGG: aae:aq_419 hypothetical protein; hypothetical protein 676337..676669 Hydrogenobaculum sp. Y04AAS1 6743547 YP_002121408.1 CDS HY04AAS1_0743 NC_011126.1 676669 677175 D PFAM: histidine triad (HIT) protein; KEGG: aae:aq_2159 hypothetical protein; histidine triad (HIT) protein 676669..677175 Hydrogenobaculum sp. Y04AAS1 6743548 YP_002121409.1 CDS rpsU NC_011126.1 677218 677421 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 677218..677421 Hydrogenobaculum sp. Y04AAS1 6743549 YP_002121410.1 CDS HY04AAS1_0745 NC_011126.1 677421 678620 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; S-adenosylmethionine synthetase 677421..678620 Hydrogenobaculum sp. Y04AAS1 6743550 YP_002121411.1 CDS HY04AAS1_0746 NC_011126.1 678640 678987 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: aae:aq_1310 NADH dehydrogenase I chain A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 678640..678987 Hydrogenobaculum sp. Y04AAS1 6743551 YP_002121412.1 CDS HY04AAS1_0747 NC_011126.1 679013 679546 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 679013..679546 Hydrogenobaculum sp. Y04AAS1 6743552 YP_002121413.1 CDS HY04AAS1_0748 NC_011126.1 679548 681308 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: aae:aq_1314 NADH dehydrogenase I chain C; chain D; NADH-ubiquinone oxidoreductase chain 49kDa 679548..681308 Hydrogenobaculum sp. Y04AAS1 6743553 YP_002121414.1 CDS HY04AAS1_0749 NC_011126.1 681305 682318 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: aae:aq_1315 NADH dehydrogenase I chain H; NADH dehydrogenase (quinone) 681305..682318 Hydrogenobaculum sp. Y04AAS1 6743554 YP_002121415.1 CDS HY04AAS1_0750 NC_011126.1 682329 682937 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aae:aq_1317 NADH dehydrogenase I chain I; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 682329..682937 Hydrogenobaculum sp. Y04AAS1 6743555 YP_002121416.1 CDS HY04AAS1_0751 NC_011126.1 682925 683422 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: aae:aq_1318 NADH dehydrogenase I chain J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 682925..683422 Hydrogenobaculum sp. Y04AAS1 6743556 YP_002121417.1 CDS HY04AAS1_0752 NC_011126.1 683415 683711 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: aae:aq_1319 NADH dehydrogenase I chain K; NADH-ubiquinone oxidoreductase chain 4L 683415..683711 Hydrogenobaculum sp. Y04AAS1 6743557 YP_002121418.1 CDS HY04AAS1_0753 NC_011126.1 683711 685612 D KEGG: aae:aq_1379 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase subunit 5 domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 683711..685612 Hydrogenobaculum sp. Y04AAS1 6743558 YP_002121419.1 CDS HY04AAS1_0754 NC_011126.1 685613 687118 D KEGG: aae:aq_1382 NADH dehydrogenase I chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 685613..687118 Hydrogenobaculum sp. Y04AAS1 6743559 YP_002121420.1 CDS HY04AAS1_0755 NC_011126.1 687122 688603 D KEGG: aae:aq_1383 NADH dehydrogenase I chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 687122..688603 Hydrogenobaculum sp. Y04AAS1 6743560 YP_002121421.1 CDS HY04AAS1_0756 NC_011126.1 688609 688980 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: aae:aq_1385 NADH dehydrogenase I chain A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 688609..688980 Hydrogenobaculum sp. Y04AAS1 6743561 YP_002121422.1 CDS HY04AAS1_0757 NC_011126.1 688980 690695 D PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: aae:aq_551 NADH dehydrogenase I chain C ; chain D; NADH-ubiquinone oxidoreductase chain 49kDa 688980..690695 Hydrogenobaculum sp. Y04AAS1 6743562 YP_002121423.1 CDS HY04AAS1_0758 NC_011126.1 690692 691738 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sul:SYO3AOP1_0881 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 690692..691738 Hydrogenobaculum sp. Y04AAS1 6743563 YP_002121424.1 CDS HY04AAS1_0759 NC_011126.1 691743 692369 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aae:aq_1375 NADH dehydrogenase I chain I; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 691743..692369 Hydrogenobaculum sp. Y04AAS1 6743564 YP_002121425.1 CDS HY04AAS1_0760 NC_011126.1 692362 692883 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: aae:aq_1377 NADH dehydrogenase I chain J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 692362..692883 Hydrogenobaculum sp. Y04AAS1 6743565 YP_002121426.1 CDS HY04AAS1_0761 NC_011126.1 692876 693208 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: aae:aq_1378 NADH dehydrogenase I chain K; NADH-ubiquinone oxidoreductase chain 4L 692876..693208 Hydrogenobaculum sp. Y04AAS1 6743566 YP_002121427.1 CDS HY04AAS1_0762 NC_011126.1 693211 695049 D KEGG: aae:aq_1320 NADH dehydrogenase I chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase subunit 5 domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 693211..695049 Hydrogenobaculum sp. Y04AAS1 6743567 YP_002121428.1 CDS HY04AAS1_0763 NC_011126.1 695042 696520 D KEGG: aae:aq_1321 NADH dehydrogenase I chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 695042..696520 Hydrogenobaculum sp. Y04AAS1 6743568 YP_002121429.1 CDS HY04AAS1_0764 NC_011126.1 696520 697914 D KEGG: aae:aq_1322 NADH dehydrogenase I chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 696520..697914 Hydrogenobaculum sp. Y04AAS1 6743569 YP_002121430.1 CDS HY04AAS1_0765 NC_011126.1 697907 698557 D KEGG: sul:SYO3AOP1_0874 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; Guanylate kinase 697907..698557 Hydrogenobaculum sp. Y04AAS1 6743570 YP_002121431.1 CDS HY04AAS1_0766 NC_011126.1 698532 698759 D TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: aae:aq_183a RNA polymerase omega chain; DNA-directed RNA polymerase subunit omega 698532..698759 Hydrogenobaculum sp. Y04AAS1 6743571 YP_002121432.1 CDS HY04AAS1_0767 NC_011126.1 698740 699987 D PFAM: peptidase M16 domain protein; KEGG: aae:aq_1271 processing protease; peptidase M16 domain-containing protein 698740..699987 Hydrogenobaculum sp. Y04AAS1 6743572 YP_002121433.1 CDS HY04AAS1_0768 NC_011126.1 699984 701339 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sul:SYO3AOP1_0851 beta-lactamase domain protein; beta-lactamase domain-containing protein 699984..701339 Hydrogenobaculum sp. Y04AAS1 6743573 YP_002121434.1 CDS HY04AAS1_0769 NC_011126.1 701332 701424 D hypothetical protein 701332..701424 Hydrogenobaculum sp. Y04AAS1 6743574 YP_002121435.1 CDS HY04AAS1_0770 NC_011126.1 701425 702564 D KEGG: mar:MAE_45070 hypothetical protein; hypothetical protein 701425..702564 Hydrogenobaculum sp. Y04AAS1 6743575 YP_002121436.1 CDS HY04AAS1_0771 NC_011126.1 702549 702824 R hypothetical protein complement(702549..702824) Hydrogenobaculum sp. Y04AAS1 6743576 YP_002121437.1 CDS HY04AAS1_0772 NC_011126.1 702866 705751 R PFAM: SMC domain protein; KEGG: aae:aq_1006 exonuclease SbcC; SMC domain-containing protein complement(702866..705751) Hydrogenobaculum sp. Y04AAS1 6743577 YP_002121438.1 CDS HY04AAS1_0773 NC_011126.1 705748 706101 R PFAM: Rhodanese domain protein; KEGG: aae:aq_477 hypothetical protein; Rhodanese domain-containing protein complement(705748..706101) Hydrogenobaculum sp. Y04AAS1 6743578 YP_002121439.1 CDS HY04AAS1_0774 NC_011126.1 706085 706462 R KEGG: aae:aq_476 aspartate 1-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase complement(706085..706462) Hydrogenobaculum sp. Y04AAS1 6743579 YP_002121440.1 CDS HY04AAS1_0775 NC_011126.1 706529 709342 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: aae:aq_305 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(706529..709342) Hydrogenobaculum sp. Y04AAS1 6743580 YP_002121441.1 CDS HY04AAS1_0776 NC_011126.1 709680 710897 D KEGG: aae:aq_271 protein; hypothetical protein 709680..710897 Hydrogenobaculum sp. Y04AAS1 6743581 YP_002121442.1 CDS HY04AAS1_0777 NC_011126.1 710923 711870 D KEGG: aae:aq_1656 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 710923..711870 Hydrogenobaculum sp. Y04AAS1 6743582 YP_002121443.1 CDS HY04AAS1_0778 NC_011126.1 711857 712606 D KEGG: dre:100003536 hypothetical protein LOC100003536; hypothetical protein 711857..712606 Hydrogenobaculum sp. Y04AAS1 6743583 YP_002121444.1 CDS HY04AAS1_0779 NC_011126.1 712627 714054 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: aae:aq_1470 biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 712627..714054 Hydrogenobaculum sp. Y04AAS1 6743584 YP_002121445.1 CDS HY04AAS1_0780 NC_011126.1 714051 714794 D KEGG: aae:aq_166 pyrroline carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase 714051..714794 Hydrogenobaculum sp. Y04AAS1 6743585 YP_002121446.1 CDS HY04AAS1_0781 NC_011126.1 714791 716335 D PFAM: SMC domain protein; KEGG: aae:aq_561 recombination protein RecN; SMC domain-containing protein 714791..716335 Hydrogenobaculum sp. Y04AAS1 6743586 YP_002121447.1 CDS HY04AAS1_0782 NC_011126.1 716369 717373 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: aae:aq_1331 cation efflux system (CzcB-like); RND family efflux transporter MFP subunit 716369..717373 Hydrogenobaculum sp. Y04AAS1 6743587 YP_002121448.1 CDS HY04AAS1_0783 NC_011126.1 717370 720417 D PFAM: acriflavin resistance protein; KEGG: sul:SYO3AOP1_0349 acriflavin resistance protein; acriflavin resistance protein 717370..720417 Hydrogenobaculum sp. Y04AAS1 6743588 YP_002121449.1 CDS HY04AAS1_0784 NC_011126.1 720468 721331 D PFAM: ribosomal L11 methyltransferase; KEGG: aae:aq_2102 50S ribosomal protein L11 methyltransferase; ribosomal L11 methyltransferase 720468..721331 Hydrogenobaculum sp. Y04AAS1 6743589 YP_002121450.1 CDS HY04AAS1_0785 NC_011126.1 721332 723806 D PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; phosphopantetheine-binding; KEGG: aae:aq_999 long-chain-fatty-acid CoA ligase; AMP-dependent synthetase and ligase 721332..723806 Hydrogenobaculum sp. Y04AAS1 6743590 YP_002121451.1 CDS HY04AAS1_0786 NC_011126.1 723890 725473 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 723890..725473 Hydrogenobaculum sp. Y04AAS1 6743591 YP_002121452.1 CDS HY04AAS1_0787 NC_011126.1 725470 726684 D KEGG: aae:aq_1152 aspartokinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 725470..726684 Hydrogenobaculum sp. Y04AAS1 6743592 YP_002121453.1 CDS HY04AAS1_0788 NC_011126.1 726674 727600 D PFAM: PfkB domain protein; KEGG: aae:aq_565 ADP-heptose synthase; PfkB domain-containing protein 726674..727600 Hydrogenobaculum sp. Y04AAS1 6743593 YP_002121454.1 CDS HY04AAS1_0789 NC_011126.1 727597 727902 R hypothetical protein complement(727597..727902) Hydrogenobaculum sp. Y04AAS1 6743594 YP_002121455.1 CDS HY04AAS1_0790 NC_011126.1 728007 729278 D PFAM: outer membrane efflux protein; KEGG: sul:SYO3AOP1_1614 outer membrane efflux protein; outer membrane efflux protein 728007..729278 Hydrogenobaculum sp. Y04AAS1 6743595 YP_002121456.1 CDS HY04AAS1_0791 NC_011126.1 729275 730396 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sul:SYO3AOP1_1613 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 729275..730396 Hydrogenobaculum sp. Y04AAS1 6743596 YP_002121457.1 CDS HY04AAS1_0792 NC_011126.1 730401 733484 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sul:SYO3AOP1_1612 acriflavin resistance protein; heavy metal efflux pump, CzcA family 730401..733484 Hydrogenobaculum sp. Y04AAS1 6743597 YP_002121458.1 CDS HY04AAS1_0793 NC_011126.1 733635 734900 R KEGG: mbn:Mboo_1434 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(733635..734900) Hydrogenobaculum sp. Y04AAS1 6743598 YP_002121459.1 CDS HY04AAS1_0794 NC_011126.1 734922 736343 R PFAM: Carbohydrate-selective porin OprB; KEGG: sus:Acid_2724 carbohydrate-selective porin OprB; Carbohydrate-selective porin OprB complement(734922..736343) Hydrogenobaculum sp. Y04AAS1 6743599 YP_002121460.1 CDS HY04AAS1_0795 NC_011126.1 736560 738059 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sul:SYO3AOP1_1378 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter complement(736560..738059) Hydrogenobaculum sp. Y04AAS1 6743600 YP_002121461.1 CDS HY04AAS1_0796 NC_011126.1 738124 738390 D KEGG: rrs:RoseRS_0192 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 738124..738390 Hydrogenobaculum sp. Y04AAS1 6743601 YP_002121462.1 CDS HY04AAS1_0797 NC_011126.1 738395 739666 D PFAM: glycosyl transferase family 39; KEGG: aae:aq_1695a hypothetical protein; glycosyl transferase family 39 738395..739666 Hydrogenobaculum sp. Y04AAS1 6743602 YP_002121463.1 CDS HY04AAS1_0798 NC_011126.1 739728 740498 D PFAM: 17 kDa surface antigen; TraT complement resistance family protein; KEGG: eba:p1B335 TraT complement resistance protein precursor; TraT complement resistance family protein 739728..740498 Hydrogenobaculum sp. Y04AAS1 6743603 YP_002121464.1 CDS HY04AAS1_0799 NC_011126.1 740589 741293 R TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: aae:aq_1303 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(740589..741293) Hydrogenobaculum sp. Y04AAS1 6743605 YP_002121465.1 CDS HY04AAS1_0800 NC_011126.1 741290 742567 R TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: aae:aq_816 glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde-2,1-aminomutase complement(741290..742567) Hydrogenobaculum sp. Y04AAS1 6743606 YP_002121466.1 CDS HY04AAS1_0801 NC_011126.1 742592 743362 R hypothetical protein complement(742592..743362) Hydrogenobaculum sp. Y04AAS1 6743607 YP_002121467.1 CDS HY04AAS1_0802 NC_011126.1 743535 745301 D PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1925; KEGG: tko:TK1809 4-alpha-glucanotransferase, GH57 family; 4-alpha-glucanotransferase 743535..745301 Hydrogenobaculum sp. Y04AAS1 6743608 YP_002121468.1 CDS HY04AAS1_0803 NC_011126.1 745295 746083 D KEGG: aae:aq_1501 hypothetical protein; hypothetical protein 745295..746083 Hydrogenobaculum sp. Y04AAS1 6743609 YP_002121469.1 CDS HY04AAS1_0804 NC_011126.1 746072 747040 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sul:SYO3AOP1_0746 histidine kinase; histidine kinase complement(746072..747040) Hydrogenobaculum sp. Y04AAS1 6743610 YP_002121470.1 CDS hslU NC_011126.1 747037 748350 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(747037..748350) Hydrogenobaculum sp. Y04AAS1 6743611 YP_002121471.1 CDS HY04AAS1_0806 NC_011126.1 748340 748651 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: aae:aq_1254 preprotein translocase YajC subunit; preprotein translocase subunit YajC complement(748340..748651) Hydrogenobaculum sp. Y04AAS1 6743612 YP_002121472.1 CDS HY04AAS1_0807 NC_011126.1 748664 749710 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aae:aq_121 hypothetical protein; geranylgeranyl reductase complement(748664..749710) Hydrogenobaculum sp. Y04AAS1 6743613 YP_002121473.1 CDS HY04AAS1_0808 NC_011126.1 749694 749993 R PFAM: histone family protein DNA-binding protein; KEGG: aae:aq_2174 integration host factor beta subunit; histone family protein DNA-binding protein complement(749694..749993) Hydrogenobaculum sp. Y04AAS1 6743614 YP_002121474.1 CDS HY04AAS1_0809 NC_011126.1 750015 751820 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(750015..751820) Hydrogenobaculum sp. Y04AAS1 6743615 YP_002121475.1 CDS HY04AAS1_0810 NC_011126.1 751822 752916 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_648 hypothetical protein; Radical SAM domain-containing protein complement(751822..752916) Hydrogenobaculum sp. Y04AAS1 6743616 YP_002121476.1 CDS HY04AAS1_0811 NC_011126.1 752981 753757 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: tpd:Teth39_2110 modification methylase, HemK family; cyclic nucleotide-binding protein complement(752981..753757) Hydrogenobaculum sp. Y04AAS1 6743617 YP_002121477.1 CDS HY04AAS1_0812 NC_011126.1 753714 754016 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: aae:aq_098 protein export membrane protein SecG; preprotein translocase subunit SecG complement(753714..754016) Hydrogenobaculum sp. Y04AAS1 6743618 YP_002121478.1 CDS HY04AAS1_0813 NC_011126.1 754043 754765 R catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A; 6-carboxyhexanoate--CoA ligase complement(754043..754765) Hydrogenobaculum sp. Y04AAS1 6743619 YP_002121479.1 CDS HY04AAS1_0814 NC_011126.1 754768 756825 R PFAM: chemotaxis sensory transducer; KEGG: cbk:CLL_A0061 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(754768..756825) Hydrogenobaculum sp. Y04AAS1 6743620 YP_002121480.1 CDS HY04AAS1_0815 NC_011126.1 756893 757546 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; translaldolase complement(756893..757546) Hydrogenobaculum sp. Y04AAS1 6743621 YP_002121481.1 CDS HY04AAS1_0816 NC_011126.1 757608 758882 D KEGG: aae:aq_806 dihydroorotase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 757608..758882 Hydrogenobaculum sp. Y04AAS1 6743622 YP_002121482.1 CDS HY04AAS1_0817 NC_011126.1 758879 759496 R PFAM: helix-turn-helix domain protein; peptidase S24 and S26 domain protein; KEGG: ecv:APECO1_2045 regulatory protein; phage repressor complement(758879..759496) Hydrogenobaculum sp. Y04AAS1 6743623 YP_002121483.1 CDS HY04AAS1_0818 NC_011126.1 759493 760320 R KEGG: aae:aq_1770 leucyl-tRNA synthetase beta subunit; tRNA synthetase valyl/leucyl anticodon-binding complement(759493..760320) Hydrogenobaculum sp. Y04AAS1 6743624 YP_002121484.1 CDS HY04AAS1_0819 NC_011126.1 760336 762717 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nis:NIS_0196 signal transduction response regulator; diguanylate cyclase/phosphodiesterase complement(760336..762717) Hydrogenobaculum sp. Y04AAS1 6743625 YP_002121485.1 CDS HY04AAS1_0820 NC_011126.1 762833 763072 R hypothetical protein complement(762833..763072) Hydrogenobaculum sp. Y04AAS1 6743626 YP_002121486.1 CDS HY04AAS1_0821 NC_011126.1 763075 763371 R KEGG: sul:SYO3AOP1_0611 hypothetical protein; hypothetical protein complement(763075..763371) Hydrogenobaculum sp. Y04AAS1 6743627 YP_002121487.1 CDS HY04AAS1_0822 NC_011126.1 763368 764297 R PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: sul:SYO3AOP1_0159 cytochrome c oxidase mono-heme subunit/FixO; cytochrome C oxidase mono-heme subunit/FixO complement(763368..764297) Hydrogenobaculum sp. Y04AAS1 6743628 YP_002121488.1 CDS HY04AAS1_0823 NC_011126.1 764311 765729 R PFAM: cytochrome c oxidase subunit I; KEGG: sul:SYO3AOP1_0160 cytochrome-c oxidase; cytochrome-c oxidase complement(764311..765729) Hydrogenobaculum sp. Y04AAS1 6743629 YP_002121489.1 CDS HY04AAS1_0824 NC_011126.1 765742 766632 R PFAM: cytochrome c class I; KEGG: sul:SYO3AOP1_0161 cytochrome c class I; cytochrome c class I complement(765742..766632) Hydrogenobaculum sp. Y04AAS1 6743630 YP_002121490.1 CDS HY04AAS1_0825 NC_011126.1 766807 768600 R KEGG: aae:aq_1663 flagellar hook associated protein FlgL; hypothetical protein complement(766807..768600) Hydrogenobaculum sp. Y04AAS1 6743631 YP_002121491.1 CDS HY04AAS1_0826 NC_011126.1 768605 771100 R PFAM: protein of unknown function DUF1078 domain protein; KEGG: aae:aq_1662 flagellar hook associated protein FlgK; hypothetical protein complement(768605..771100) Hydrogenobaculum sp. Y04AAS1 6743632 YP_002121492.1 CDS HY04AAS1_0827 NC_011126.1 771102 771374 R hypothetical protein complement(771102..771374) Hydrogenobaculum sp. Y04AAS1 6743633 YP_002121493.1 CDS HY04AAS1_0828 NC_011126.1 771371 772342 R PFAM: DNA polymerase III delta; KEGG: sul:SYO3AOP1_0179 DNA polymerase III delta subunit; DNA polymerase III subunit delta complement(771371..772342) Hydrogenobaculum sp. Y04AAS1 6743634 YP_002121494.1 CDS HY04AAS1_0829 NC_011126.1 772335 773159 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: aae:aq_445 acetyl-CoA carboxylase carboxyl transferase subunit beta; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(772335..773159) Hydrogenobaculum sp. Y04AAS1 6743635 YP_002121495.1 CDS HY04AAS1_0830 NC_011126.1 773161 774000 R KEGG: aae:aq_2132 pantothenate synthetase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase complement(773161..774000) Hydrogenobaculum sp. Y04AAS1 6743636 YP_002121496.1 CDS HY04AAS1_0831 NC_011126.1 774013 775437 R KEGG: sul:SYO3AOP1_1395 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate galactose phosphotransferase complement(774013..775437) Hydrogenobaculum sp. Y04AAS1 6743637 YP_002121497.1 CDS HY04AAS1_0832 NC_011126.1 775437 776951 R KEGG: aae:aq_291 magnesium chelatase family protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(775437..776951) Hydrogenobaculum sp. Y04AAS1 6743638 YP_002121498.1 CDS HY04AAS1_0833 NC_011126.1 776941 778290 R KEGG: aae:aq_589 mannose-6-phosphate isomerase/mannose-1-phosphate guanyl transferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(776941..778290) Hydrogenobaculum sp. Y04AAS1 6743639 YP_002121499.1 CDS HY04AAS1_0834 NC_011126.1 778300 779376 R PFAM: protein of unknown function DUF43; KEGG: aae:aq_1754 hypothetical protein; hypothetical protein complement(778300..779376) Hydrogenobaculum sp. Y04AAS1 6743640 YP_002121500.1 CDS HY04AAS1_0835 NC_011126.1 779708 781693 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 779708..781693 Hydrogenobaculum sp. Y04AAS1 6743641 YP_002121501.1 CDS HY04AAS1_0836 NC_011126.1 781700 782200 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: aae:aq_2171 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 781700..782200 Hydrogenobaculum sp. Y04AAS1 6743642 YP_002121502.1 CDS HY04AAS1_0837 NC_011126.1 782261 783259 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sul:SYO3AOP1_0314 D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 782261..783259 Hydrogenobaculum sp. Y04AAS1 6743643 YP_002121503.1 CDS HY04AAS1_0838 NC_011126.1 783311 784882 D TIGRFAM: virulence factor Mce family protein; PFAM: Mammalian cell entry related domain protein; KEGG: sul:SYO3AOP1_0393 mammalian cell entry related domain protein; virulence factor Mce 783311..784882 Hydrogenobaculum sp. Y04AAS1 6743644 YP_002121504.1 CDS HY04AAS1_0839 NC_011126.1 784879 786258 R KEGG: zmo:ZMO0352 hypothetical protein; hypothetical protein complement(784879..786258) Hydrogenobaculum sp. Y04AAS1 6743645 YP_002121505.1 CDS HY04AAS1_0840 NC_011126.1 791427 794117 R PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: aae:aq_1774 glutamate ammonia ligase adenylyl-transferase; (glutamate--ammonia-ligase) adenylyltransferase complement(791427..794117) Hydrogenobaculum sp. Y04AAS1 6743651 YP_002121506.1 CDS HY04AAS1_0841 NC_011126.1 794110 794505 R PFAM: thioesterase superfamily protein; KEGG: aae:aq_1494 hypothetical protein; thioesterase complement(794110..794505) Hydrogenobaculum sp. Y04AAS1 6743652 YP_002121507.1 CDS HY04AAS1_0842 NC_011126.1 794469 794927 R PFAM: ferric-uptake regulator; KEGG: aae:aq_1418 transcriptional regulator (FurR family); Fur family ferric uptake regulator complement(794469..794927) Hydrogenobaculum sp. Y04AAS1 6743653 YP_002121508.1 CDS HY04AAS1_0843 NC_011126.1 794995 795630 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: aae:aq_202 HAM1 protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 794995..795630 Hydrogenobaculum sp. Y04AAS1 6743654 YP_002121509.1 CDS HY04AAS1_0844 NC_011126.1 795632 795811 D hypothetical protein 795632..795811 Hydrogenobaculum sp. Y04AAS1 6743655 YP_002121510.1 CDS HY04AAS1_0845 NC_011126.1 795804 796742 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: acl:ACL_1204 thioredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 795804..796742 Hydrogenobaculum sp. Y04AAS1 6743656 YP_002121511.1 CDS HY04AAS1_0846 NC_011126.1 796739 798019 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: nis:NIS_0196 signal transduction response regulator; diguanylate cyclase/phosphodiesterase 796739..798019 Hydrogenobaculum sp. Y04AAS1 6743657 YP_002121512.1 CDS HY04AAS1_0847 NC_011126.1 798019 798639 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 798019..798639 Hydrogenobaculum sp. Y04AAS1 6743658 YP_002121513.1 CDS HY04AAS1_0848 NC_011126.1 798647 799261 D PFAM: regulatory protein TetR; KEGG: sfu:Sfum_1401 transcriptional regulator, TetR family; TetR family transcriptional regulator 798647..799261 Hydrogenobaculum sp. Y04AAS1 6743659 YP_002121514.1 CDS HY04AAS1_0849 NC_011126.1 799258 800511 D PFAM: outer membrane efflux protein; KEGG: sul:SYO3AOP1_1380 outer membrane efflux protein; outer membrane efflux protein 799258..800511 Hydrogenobaculum sp. Y04AAS1 6743660 YP_002121515.1 CDS HY04AAS1_0850 NC_011126.1 800498 801637 D PFAM: secretion protein HlyD family protein; KEGG: sul:SYO3AOP1_1379 secretion protein HlyD family protein; hemolysin D 800498..801637 Hydrogenobaculum sp. Y04AAS1 6743661 YP_002121516.1 CDS HY04AAS1_0851 NC_011126.1 801685 802992 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 801685..802992 Hydrogenobaculum sp. Y04AAS1 6743662 YP_002121517.1 CDS HY04AAS1_0852 NC_011126.1 802963 803790 R PFAM: CinA domain protein; KEGG: aae:aq_1996 competence/damage-inducible protein CinA C-terminal domain; CinA domain-containing protein complement(802963..803790) Hydrogenobaculum sp. Y04AAS1 6743663 YP_002121518.1 CDS HY04AAS1_0853 NC_011126.1 803787 805523 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: aae:aq_556 penicillin binding protein 2; peptidoglycan glycosyltransferase complement(803787..805523) Hydrogenobaculum sp. Y04AAS1 6743664 YP_002121519.1 CDS HY04AAS1_0854 NC_011126.1 805520 805762 R hypothetical protein complement(805520..805762) Hydrogenobaculum sp. Y04AAS1 6743665 YP_002121520.1 CDS HY04AAS1_0855 NC_011126.1 805743 806633 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: aae:aq_1875 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW complement(805743..806633) Hydrogenobaculum sp. Y04AAS1 6743666 YP_002121521.1 CDS HY04AAS1_0856 NC_011126.1 806626 807555 R PFAM: histone deacetylase superfamily; KEGG: aae:aq_2110 acetoin utilization protein; histone deacetylase complement(806626..807555) Hydrogenobaculum sp. Y04AAS1 6743667 YP_002121522.1 CDS rph NC_011126.1 807552 808319 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(807552..808319) Hydrogenobaculum sp. Y04AAS1 6743668 YP_002121523.1 CDS HY04AAS1_0858 NC_011126.1 808328 808939 R KEGG: aae:aq_2138 biotin biosynthesis protein; biotin biosynthesis protein complement(808328..808939) Hydrogenobaculum sp. Y04AAS1 6743669 YP_002121524.1 CDS HY04AAS1_0859 NC_011126.1 809112 809402 D PFAM: chaperonin Cpn10; KEGG: aae:aq_2199 GroES; chaperonin Cpn10 809112..809402 Hydrogenobaculum sp. Y04AAS1 6743670 YP_002121525.1 CDS groEL NC_011126.1 809435 811066 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 809435..811066 Hydrogenobaculum sp. Y04AAS1 6743671 YP_002121526.1 CDS HY04AAS1_0861 NC_011126.1 811074 812474 R PFAM: glycosyl transferase family 39; KEGG: aae:aq_1220 protein; glycosyl transferase family 39 complement(811074..812474) Hydrogenobaculum sp. Y04AAS1 6743672 YP_002121527.1 CDS HY04AAS1_0862 NC_011126.1 812452 813726 R KEGG: blo:BL1148 deoxyguanosinetriphosphate triphosphohydrolase-like protein; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(812452..813726) Hydrogenobaculum sp. Y04AAS1 6743673 YP_002121528.1 CDS HY04AAS1_0863 NC_011126.1 813761 814384 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 813761..814384 Hydrogenobaculum sp. Y04AAS1 6743674 YP_002121529.1 CDS HY04AAS1_0864 NC_011126.1 814438 814791 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: aae:aq_1857 hypothetical protein; iron-sulfur cluster assembly accessory protein 814438..814791 Hydrogenobaculum sp. Y04AAS1 6743675 YP_002121530.1 CDS HY04AAS1_0865 NC_011126.1 814932 815789 D hypothetical protein 814932..815789 Hydrogenobaculum sp. Y04AAS1 6743676 YP_002121531.1 CDS HY04AAS1_0866 NC_011126.1 815798 816706 R PFAM: protein of unknown function DUF185; KEGG: aae:aq_622 hypothetical protein; hypothetical protein complement(815798..816706) Hydrogenobaculum sp. Y04AAS1 6743677 YP_002121532.1 CDS HY04AAS1_0867 NC_011126.1 816723 817157 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: aae:aq_567 ribosomal-protein-alanine acetyltransferase; ribosomal-protein-alanine acetyltransferase 816723..817157 Hydrogenobaculum sp. Y04AAS1 6743678 YP_002121533.1 CDS HY04AAS1_0868 NC_011126.1 817171 817422 R KEGG: aae:aq_1570 protein; hypothetical protein complement(817171..817422) Hydrogenobaculum sp. Y04AAS1 6743679 YP_002121534.1 CDS HY04AAS1_0869 NC_011126.1 817376 817807 R PFAM: flagellar protein FliS; KEGG: aae:aq_2002 flagellar protein FliS; flagellar protein FliS complement(817376..817807) Hydrogenobaculum sp. Y04AAS1 6743680 YP_002121535.1 CDS HY04AAS1_0870 NC_011126.1 817820 819205 R KEGG: aae:aq_2001 flagellar hook associated protein FliD; Flagellar capping protein-like complement(817820..819205) Hydrogenobaculum sp. Y04AAS1 6743681 YP_002121536.1 CDS HY04AAS1_0871 NC_011126.1 819209 819622 R PFAM: flagellar protein FlaG protein; KEGG: sul:SYO3AOP1_0993 flagellar protein FlaG protein; flagellar protein FlaG complement(819209..819622) Hydrogenobaculum sp. Y04AAS1 6743682 YP_002121537.1 CDS HY04AAS1_0872 NC_011126.1 819667 820119 R PFAM: endodeoxyribonuclease RusA; KEGG: aae:aq_1953 crossover junction endodeoxyribonuclease rus; endodeoxyribonuclease RusA complement(819667..820119) Hydrogenobaculum sp. Y04AAS1 6743683 YP_002121538.1 CDS pheT NC_011126.1 820136 822403 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 820136..822403 Hydrogenobaculum sp. Y04AAS1 6743684 YP_002121539.1 CDS HY04AAS1_0874 NC_011126.1 822622 823179 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: fnu:FN0902 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 822622..823179 Hydrogenobaculum sp. Y04AAS1 6743686 YP_002121540.1 CDS HY04AAS1_0875 NC_011126.1 823161 824888 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 823161..824888 Hydrogenobaculum sp. Y04AAS1 6743687 YP_002121541.1 CDS HY04AAS1_0876 NC_011126.1 824946 826319 D KEGG: sul:SYO3AOP1_1464 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 824946..826319 Hydrogenobaculum sp. Y04AAS1 6743688 YP_002121542.1 CDS HY04AAS1_0877 NC_011126.1 826374 827027 D TIGRFAM: ATP synthase F0 subunit A; PFAM: H+transporting two-sector ATPase A subunit; KEGG: aae:aq_179 ATP synthase F0 subunit a; ATP synthase F0 subunit A 826374..827027 Hydrogenobaculum sp. Y04AAS1 6743689 YP_002121543.1 CDS HY04AAS1_0878 NC_011126.1 827029 827436 D KEGG: aae:aq_178 protein; hypothetical protein 827029..827436 Hydrogenobaculum sp. Y04AAS1 6743690 YP_002121544.1 CDS HY04AAS1_0879 NC_011126.1 827447 827794 D TIGRFAM: ATP synthase F0 subunit C; PFAM: H+transporting two-sector ATPase C subunit; KEGG: sul:SYO3AOP1_0972 ATP synthase F0 subunit C; ATP synthase F0 subunit C 827447..827794 Hydrogenobaculum sp. Y04AAS1 6743691 YP_002121545.1 CDS HY04AAS1_0880 NC_011126.1 827996 828202 D PFAM: protein of unknown function DUF37; KEGG: aae:aq_175a hypothetical protein; hypothetical protein 827996..828202 Hydrogenobaculum sp. Y04AAS1 6743692 YP_002121546.1 CDS HY04AAS1_0881 NC_011126.1 828202 829746 D PFAM: 60 kDa inner membrane insertion protein; KEGG: aae:aq_175 60kDa inner-membrane protein; hypothetical protein 828202..829746 Hydrogenobaculum sp. Y04AAS1 6743693 YP_002121547.1 CDS HY04AAS1_0882 NC_011126.1 829765 831075 D KEGG: aae:aq_592 hypothetical protein; hypothetical protein 829765..831075 Hydrogenobaculum sp. Y04AAS1 6743694 YP_002121548.1 CDS HY04AAS1_0883 NC_011126.1 831093 832061 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-aribino-heptulonate 7-phosphate; 3-dehydroquinate synthase 831093..832061 Hydrogenobaculum sp. Y04AAS1 6743695 YP_002121549.1 CDS HY04AAS1_0884 NC_011126.1 832058 832717 D PFAM: ribulose-phosphate 3-epimerase; KEGG: aae:aq_968 ribulose-5-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 832058..832717 Hydrogenobaculum sp. Y04AAS1 6743696 YP_002121550.1 CDS HY04AAS1_0885 NC_011126.1 832710 833807 D PFAM: aminotransferase class I and II; KEGG: aae:aq_421 aminotransferase (AspC family); class I and II aminotransferase 832710..833807 Hydrogenobaculum sp. Y04AAS1 6743697 YP_002121551.1 CDS HY04AAS1_0886 NC_011126.1 833843 834685 D TIGRFAM: spermidine synthase; PFAM: Spermine synthase; Methyltransferase type 12; KEGG: aae:aq_062 spermidine synthase; spermidine synthase 833843..834685 Hydrogenobaculum sp. Y04AAS1 6743698 YP_002121552.1 CDS HY04AAS1_0887 NC_011126.1 834697 836217 D hypothetical protein 834697..836217 Hydrogenobaculum sp. Y04AAS1 6743699 YP_002121553.1 CDS HY04AAS1_0888 NC_011126.1 836222 836899 D PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: aae:aq_282 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase 836222..836899 Hydrogenobaculum sp. Y04AAS1 6743700 YP_002121554.1 CDS HY04AAS1_0889 NC_011126.1 836832 838310 R PFAM: Na+/solute symporter; KEGG: tvo:TVN1300 Na+/panthothenate symporter permease; Na+/solute symporter complement(836832..838310) Hydrogenobaculum sp. Y04AAS1 6743701 YP_002121555.1 CDS HY04AAS1_0890 NC_011126.1 838303 838479 R KEGG: sto:STS092 hypothetical protein; hypothetical protein complement(838303..838479) Hydrogenobaculum sp. Y04AAS1 6743702 YP_002121556.1 CDS HY04AAS1_0891 NC_011126.1 838538 839818 D PFAM: histidinol dehydrogenase; KEGG: aae:aq_782 histidinol dehydrogenase; histidinol dehydrogenase 838538..839818 Hydrogenobaculum sp. Y04AAS1 6743703 YP_002121557.1 CDS HY04AAS1_0892 NC_011126.1 839815 840357 D KEGG: aae:aq_780 protein; hypothetical protein 839815..840357 Hydrogenobaculum sp. Y04AAS1 6743704 YP_002121558.1 CDS HY04AAS1_0893 NC_011126.1 840354 841190 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: aae:aq_1898 methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 840354..841190 Hydrogenobaculum sp. Y04AAS1 6743705 YP_002121559.1 CDS HY04AAS1_0894 NC_011126.1 841187 843289 D KEGG: aae:aq_633 DNA ligase (NAD dependent); TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 841187..843289 Hydrogenobaculum sp. Y04AAS1 6743706 YP_002121560.1 CDS HY04AAS1_0895 NC_011126.1 843301 843963 D KEGG: tva:TVAG_139760 viral A-type inclusion protein, Pfam: Myosin_tail_1 Pox_A_type_inc TBPIP bZIP_Maf Filament ATG16 Rab5-bind Laminin_I DUF904 Microtub_assoc CDC37_N Syntaxin HalX Spectrin BRE1 Prefoldin_2 PROSITE: GLU_RICH; hypothetical protein 843301..843963 Hydrogenobaculum sp. Y04AAS1 6743707 YP_002121561.1 CDS HY04AAS1_0896 NC_011126.1 843960 844451 R PFAM: Domain of unknown function DUF1791; KEGG: cpf:CPF_0093 hypothetical protein; hypothetical protein complement(843960..844451) Hydrogenobaculum sp. Y04AAS1 6743708 YP_002121562.1 CDS HY04AAS1_0897 NC_011126.1 844460 845044 R KEGG: sto:ST2368 hypothetical protein; hypothetical protein complement(844460..845044) Hydrogenobaculum sp. Y04AAS1 6743709 YP_002121563.1 CDS HY04AAS1_0898 NC_011126.1 845041 846330 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pol:Bpro_3715 ferredoxin; hypothetical protein complement(845041..846330) Hydrogenobaculum sp. Y04AAS1 6743710 YP_002121564.1 CDS HY04AAS1_0899 NC_011126.1 846414 846848 R PFAM: Rubrerythrin; KEGG: sto:ST2370 hypothetical rubrerythrin; rubrerythrin complement(846414..846848) Hydrogenobaculum sp. Y04AAS1 6743711 YP_002121565.1 CDS HY04AAS1_0900 NC_011126.1 846960 847394 D KEGG: bca:BCE_A0224 lumazine binding domain protein; hypothetical protein 846960..847394 Hydrogenobaculum sp. Y04AAS1 6743712 YP_002121566.1 CDS HY04AAS1_0901 NC_011126.1 847394 848182 D KEGG: nis:NIS_1089 hypothetical protein; hypothetical protein 847394..848182 Hydrogenobaculum sp. Y04AAS1 6743713 YP_002121567.1 CDS HY04AAS1_0902 NC_011126.1 848187 848621 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: aae:aq_418 general secretion pathway protein G; general secretion pathway protein G 848187..848621 Hydrogenobaculum sp. Y04AAS1 6743714 YP_002121568.1 CDS HY04AAS1_0903 NC_011126.1 848593 848877 D KEGG: cbk:CLL_A3296 prokaryotic N-methylation motif domain protein; hypothetical protein 848593..848877 Hydrogenobaculum sp. Y04AAS1 6743715 YP_002121569.1 CDS HY04AAS1_0904 NC_011126.1 848874 849359 D KEGG: aae:aq_2118 hypothetical protein; hypothetical protein 848874..849359 Hydrogenobaculum sp. Y04AAS1 6743716 YP_002121570.1 CDS HY04AAS1_0905 NC_011126.1 849365 850012 D KEGG: ddi:DDB_0231216 IRE family protein kinase; hypothetical protein 849365..850012 Hydrogenobaculum sp. Y04AAS1 6743717 YP_002121571.1 CDS HY04AAS1_0906 NC_011126.1 850009 851226 R PFAM: cell wall hydrolase/autolysin; KEGG: aae:aq_1681 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(850009..851226) Hydrogenobaculum sp. Y04AAS1 6743718 YP_002121572.1 CDS HY04AAS1_0907 NC_011126.1 851177 852892 R KEGG: aae:aq_1682 hypothetical protein; hypothetical protein complement(851177..852892) Hydrogenobaculum sp. Y04AAS1 6743719 YP_002121573.1 CDS HY04AAS1_0908 NC_011126.1 852916 854622 D PFAM: type II secretion system protein E; KEGG: ttj:TTHA0364 type IV pilus assembly protein PilF; type II secretion system protein E 852916..854622 Hydrogenobaculum sp. Y04AAS1 6743720 YP_002121574.1 CDS HY04AAS1_0909 NC_011126.1 854632 857673 D KEGG: fnu:FN0992 ADP-heptose:LPS heptosyltransferase II; ADP-heptose:LPS heptosyltransferase-like protein 854632..857673 Hydrogenobaculum sp. Y04AAS1 6743721 YP_002121575.1 CDS HY04AAS1_0910 NC_011126.1 857729 858784 D KEGG: rno:502541 loricrin; loricrin 857729..858784 Hydrogenobaculum sp. Y04AAS1 6743722 YP_002121576.1 CDS HY04AAS1_0911 NC_011126.1 858851 859642 D KEGG: mar:MAE_57710 hypothetical protein; hypothetical protein 858851..859642 Hydrogenobaculum sp. Y04AAS1 6743723 YP_002121577.1 CDS HY04AAS1_0912 NC_011126.1 859714 860652 D PFAM: Polyprenyl synthetase; KEGG: aae:aq_895 octoprenyl-diphosphate synthase; Polyprenyl synthetase 859714..860652 Hydrogenobaculum sp. Y04AAS1 6743724 YP_002121578.1 CDS HY04AAS1_0913 NC_011126.1 860652 861878 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: aae:aq_101 hemolysin; hypothetical protein 860652..861878 Hydrogenobaculum sp. Y04AAS1 6743725 YP_002121579.1 CDS HY04AAS1_0914 NC_011126.1 861939 862133 D KEGG: cph:Cpha266_2705 hypothetical protein; hypothetical protein 861939..862133 Hydrogenobaculum sp. Y04AAS1 6743726 YP_002121580.1 CDS HY04AAS1_0915 NC_011126.1 862357 863196 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: wsu:WS0936 TtrB; 4Fe-4S ferredoxin 862357..863196 Hydrogenobaculum sp. Y04AAS1 6743727 YP_002121581.1 CDS HY04AAS1_0916 NC_011126.1 863186 864370 D PFAM: Polysulphide reductase NrfD; KEGG: wsu:WS0937 hypothetical protein; polysulfide reductase 863186..864370 Hydrogenobaculum sp. Y04AAS1 6743728 YP_002121582.1 CDS HY04AAS1_0917 NC_011126.1 864367 867435 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: wsu:WS0938 TtrA; molybdopterin oxidoreductase 864367..867435 Hydrogenobaculum sp. Y04AAS1 6743729 YP_002121583.1 CDS HY04AAS1_0918 NC_011126.1 867467 868171 R PFAM: polysaccharide deacetylase; KEGG: sul:SYO3AOP1_1196 polysaccharide deacetylase; polysaccharide deacetylase complement(867467..868171) Hydrogenobaculum sp. Y04AAS1 6743730 YP_002121584.1 CDS HY04AAS1_0919 NC_011126.1 868168 868908 R PFAM: protein of unknown function DUF81; KEGG: tpd:Teth39_0912 protein of unknown function DUF81; hypothetical protein complement(868168..868908) Hydrogenobaculum sp. Y04AAS1 6743731 YP_002121585.1 CDS HY04AAS1_0920 NC_011126.1 868905 870764 R KEGG: tex:Teth514_1974 amino acid transporter-like protein; amino acid transporter complement(868905..870764) Hydrogenobaculum sp. Y04AAS1 6743732 YP_002121586.1 CDS HY04AAS1_0921 NC_011126.1 870776 870952 R hypothetical protein complement(870776..870952) Hydrogenobaculum sp. Y04AAS1 6743733 YP_002121587.1 CDS HY04AAS1_0922 NC_011126.1 870949 871725 R KEGG: aae:aq_1625 hypothetical protein; hypothetical protein complement(870949..871725) Hydrogenobaculum sp. Y04AAS1 6743734 YP_002121588.1 CDS HY04AAS1_0923 NC_011126.1 871727 871939 R KEGG: sul:SYO3AOP1_0138 hypothetical protein; hypothetical protein complement(871727..871939) Hydrogenobaculum sp. Y04AAS1 6743735 YP_002121589.1 CDS HY04AAS1_0924 NC_011126.1 872009 872884 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: aae:aq_1622 succinyl-CoA synthetase alpha chain; succinyl-CoA synthetase subunit alpha complement(872009..872884) Hydrogenobaculum sp. Y04AAS1 6743736 YP_002121590.1 CDS sucC NC_011126.1 872897 874045 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(872897..874045) Hydrogenobaculum sp. Y04AAS1 6743737 YP_002121591.1 CDS HY04AAS1_0926 NC_011126.1 874243 874458 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sul:SYO3AOP1_0368 cold-shock DNA-binding domain protein; cold-shock DNA-binding protein complement(874243..874458) Hydrogenobaculum sp. Y04AAS1 6743738 YP_002121592.1 CDS HY04AAS1_0927 NC_011126.1 874553 875404 R TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: sul:SYO3AOP1_1511 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B complement(874553..875404) Hydrogenobaculum sp. Y04AAS1 6743739 YP_002121593.1 CDS HY04AAS1_0928 NC_011126.1 875405 876340 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; Sigma-70 region 4 type 2; KEGG: aae:aq_1452 RNA polymerase sigma factor; RNA polymerase, sigma 70 family subunit complement(875405..876340) Hydrogenobaculum sp. Y04AAS1 6743740 YP_002121594.1 CDS HY04AAS1_0929 NC_011126.1 876362 877783 R KEGG: aae:aq_1450 periplasmic serine protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(876362..877783) Hydrogenobaculum sp. Y04AAS1 6743741 YP_002121595.1 CDS HY04AAS1_0930 NC_011126.1 877788 878399 R PFAM: Methyltransferase type 11; KEGG: aae:aq_2139 hypothetical protein; type 11 methyltransferase complement(877788..878399) Hydrogenobaculum sp. Y04AAS1 6743742 YP_002121596.1 CDS HY04AAS1_0931 NC_011126.1 878392 879423 R PFAM: biotin/lipoate A/B protein ligase; KEGG: aae:aq_1638 lipoate-protein ligase A; biotin/lipoate A/B protein ligase complement(878392..879423) Hydrogenobaculum sp. Y04AAS1 6743743 YP_002121597.1 CDS fabZ NC_011126.1 879420 879866 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(879420..879866) Hydrogenobaculum sp. Y04AAS1 6743744 YP_002121598.1 CDS HY04AAS1_0933 NC_011126.1 879912 880700 D PFAM: protein of unknown function DUF52; KEGG: aae:aq_890 hypothetical protein; hypothetical protein 879912..880700 Hydrogenobaculum sp. Y04AAS1 6743745 YP_002121599.1 CDS HY04AAS1_0934 NC_011126.1 880697 881176 D KEGG: aae:aq_1484 hypothetical gluconokinase; glucokinase 880697..881176 Hydrogenobaculum sp. Y04AAS1 6743746 YP_002121600.1 CDS HY04AAS1_0935 NC_011126.1 881361 881699 D PFAM: nitrogen regulatory protein P-II; KEGG: aae:aq_109 nitrogen regulatory PII protein; nitrogen regulatory protein P-II 881361..881699 Hydrogenobaculum sp. Y04AAS1 6743747 YP_002121601.1 CDS HY04AAS1_0936 NC_011126.1 881696 882997 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: mth:MTH663 ammonium transporter; ammonium transporter 881696..882997 Hydrogenobaculum sp. Y04AAS1 6743748 YP_002121602.1 CDS HY04AAS1_0937 NC_011126.1 883019 884164 D KEGG: met:M446_4547 hypothetical protein; hypothetical protein 883019..884164 Hydrogenobaculum sp. Y04AAS1 6743749 YP_002121603.1 CDS HY04AAS1_0938 NC_011126.1 884197 884328 D KEGG: maq:Maqu_2792 diguanylate phosphodiesterase; diguanylate phosphodiesterase 884197..884328 Hydrogenobaculum sp. Y04AAS1 6743750 YP_002121604.1 CDS HY04AAS1_0939 NC_011126.1 884469 885818 D KEGG: aae:aq_1862 hypothetical protein; hypothetical protein 884469..885818 Hydrogenobaculum sp. Y04AAS1 6743751 YP_002121605.1 CDS HY04AAS1_0940 NC_011126.1 885833 886624 D TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: wsu:WS1811 molybdenum-pterin-binding protein; ModE family transcriptional regulator 885833..886624 Hydrogenobaculum sp. Y04AAS1 6743752 YP_002121606.1 CDS HY04AAS1_0941 NC_011126.1 886636 887370 D TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sul:SYO3AOP1_0252 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter substrate-binding protein 886636..887370 Hydrogenobaculum sp. Y04AAS1 6743753 YP_002121607.1 CDS HY04AAS1_0942 NC_011126.1 887371 888027 D TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hpy:HP0474 molybdenum ABC transporter, permease protein (ModB); molybdate ABC transporter inner membrane protein 887371..888027 Hydrogenobaculum sp. Y04AAS1 6743754 YP_002121608.1 CDS HY04AAS1_0943 NC_011126.1 888024 888653 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cjj:CJJ81176_0322 molybdenum ABC transporter, ATP-binding protein; ABC transporter 888024..888653 Hydrogenobaculum sp. Y04AAS1 6743755 YP_002121609.1 CDS HY04AAS1_0944 NC_011126.1 888806 890215 D TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; KEGG: mca:MCA0204 nitrogenase cofactor biosynthesis protein NifB; nitrogenase cofactor biosynthesis protein NifB 888806..890215 Hydrogenobaculum sp. Y04AAS1 6743756 YP_002121610.1 CDS HY04AAS1_0945 NC_011126.1 890219 890431 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: mca:MCA0205 ferredoxin, 4Fe-4S; 4Fe-4S ferredoxin 890219..890431 Hydrogenobaculum sp. Y04AAS1 6743757 YP_002121611.1 CDS HY04AAS1_0946 NC_011126.1 890428 890745 D PFAM: nitrogen fixation protein NifW; KEGG: zmo:ZMO1836 nitrogenase stabilizing/protective protein; nitrogen fixation protein NifW 890428..890745 Hydrogenobaculum sp. Y04AAS1 6743758 YP_002121612.1 CDS HY04AAS1_0947 NC_011126.1 890726 890974 D PFAM: NifZ family protein; KEGG: hha:Hhal_0277 NifZ family protein; NifZ family protein 890726..890974 Hydrogenobaculum sp. Y04AAS1 6743759 YP_002121613.1 CDS HY04AAS1_0948 NC_011126.1 890937 891164 D hypothetical protein 890937..891164 Hydrogenobaculum sp. Y04AAS1 6743760 YP_002121614.1 CDS HY04AAS1_0949 NC_011126.1 891215 892054 R TIGRFAM: modD protein; PFAM: Quinolinate phosphoribosyl transferase; KEGG: ckl:CKL_3642 predicted nicotinate-nucleotide diphosphorylase; modD protein complement(891215..892054) Hydrogenobaculum sp. Y04AAS1 6743761 YP_002121615.1 CDS HY04AAS1_0950 NC_011126.1 892112 892807 R KEGG: hmo:HM1_1325 hypothetical protein; hypothetical protein complement(892112..892807) Hydrogenobaculum sp. Y04AAS1 6743762 YP_002121616.1 CDS HY04AAS1_0951 NC_011126.1 892983 894041 D TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: aae:aq_410 carbamoyl-phosphate synthase small chain; carbamoyl-phosphate synthase small subunit 892983..894041 Hydrogenobaculum sp. Y04AAS1 6743763 YP_002121617.1 CDS HY04AAS1_0952 NC_011126.1 894042 895187 D PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO1863 multidrug-efflux transporter; major facilitator superfamily protein 894042..895187 Hydrogenobaculum sp. Y04AAS1 6743764 YP_002121618.1 CDS HY04AAS1_0953 NC_011126.1 895188 895760 R KEGG: csa:Csal_2511 hypothetical protein; hypothetical protein complement(895188..895760) Hydrogenobaculum sp. Y04AAS1 6743765 YP_002121619.1 CDS HY04AAS1_0954 NC_011126.1 895739 896305 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(895739..896305) Hydrogenobaculum sp. Y04AAS1 6743766 YP_002121620.1 CDS HY04AAS1_0955 NC_011126.1 896305 896898 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(896305..896898) Hydrogenobaculum sp. Y04AAS1 6743767 YP_002121621.1 CDS HY04AAS1_0956 NC_011126.1 896963 897493 D PFAM: glucose inhibited division protein; KEGG: aae:aq_1582 glucose inhibited division protein B; glucose inhibited division protein 896963..897493 Hydrogenobaculum sp. Y04AAS1 6743768 YP_002121622.1 CDS HY04AAS1_0957 NC_011126.1 897513 899039 D PFAM: protein of unknown function DUF1703; KEGG: sul:SYO3AOP1_0027 protein of unknown function DUF1703; hypothetical protein 897513..899039 Hydrogenobaculum sp. Y04AAS1 6743769 YP_002121623.1 CDS HY04AAS1_0958 NC_011126.1 899140 899748 R PFAM: NLP/P60 protein; KEGG: sul:SYO3AOP1_0828 NLP/P60 protein; NLP/P60 protein complement(899140..899748) Hydrogenobaculum sp. Y04AAS1 6743770 YP_002121624.1 CDS HY04AAS1_0959 NC_011126.1 899759 900091 R KEGG: rpt:Rpal_4871 TonB-dependent receptor; TonB-dependent receptor complement(899759..900091) Hydrogenobaculum sp. Y04AAS1 6743771 YP_002121625.1 CDS HY04AAS1_0960 NC_011126.1 900156 901493 D KEGG: aae:aq_1862 hypothetical protein; hypothetical protein 900156..901493 Hydrogenobaculum sp. Y04AAS1 6743772 YP_002121626.1 CDS HY04AAS1_0961 NC_011126.1 901544 901903 D hypothetical protein 901544..901903 Hydrogenobaculum sp. Y04AAS1 6743773 YP_002121627.1 CDS HY04AAS1_0962 NC_011126.1 901936 902172 D KEGG: sul:SYO3AOP1_0027 protein of unknown function DUF1703; hypothetical protein 901936..902172 Hydrogenobaculum sp. Y04AAS1 6743774 YP_002121628.1 CDS HY04AAS1_0963 NC_011126.1 902270 903610 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(902270..903610) Hydrogenobaculum sp. Y04AAS1 6743775 YP_002121629.1 CDS HY04AAS1_0964 NC_011126.1 903610 904344 R PFAM: protein of unknown function DUF218; KEGG: sul:SYO3AOP1_1020 protein of unknown function DUF218; hypothetical protein complement(903610..904344) Hydrogenobaculum sp. Y04AAS1 6743776 YP_002121630.1 CDS HY04AAS1_0965 NC_011126.1 904341 904763 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aae:aq_1987 hypothetical protein; biopolymer transport protein ExbD/TolR complement(904341..904763) Hydrogenobaculum sp. Y04AAS1 6743777 YP_002121631.1 CDS HY04AAS1_0966 NC_011126.1 904765 905385 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: aae:aq_1988 TolQ homolog; MotA/TolQ/ExbB proton channel complement(904765..905385) Hydrogenobaculum sp. Y04AAS1 6743778 YP_002121632.1 CDS HY04AAS1_0967 NC_011126.1 905389 908061 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aae:aq_1989 hypothetical protein; hypothetical protein complement(905389..908061) Hydrogenobaculum sp. Y04AAS1 6743779 YP_002121633.1 CDS HY04AAS1_0968 NC_011126.1 908036 908674 R PFAM: Phosphoglycerate mutase; KEGG: aae:aq_1990 phosphoglycerate mutase; phosphoglycerate mutase complement(908036..908674) Hydrogenobaculum sp. Y04AAS1 6743780 YP_002121634.1 CDS HY04AAS1_0969 NC_011126.1 908662 909786 R PFAM: aminotransferase class V; KEGG: sul:SYO3AOP1_1504 aminotransferase class V; class V aminotransferase complement(908662..909786) Hydrogenobaculum sp. Y04AAS1 6743781 YP_002121635.1 CDS HY04AAS1_0970 NC_011126.1 909783 910208 R PFAM: nucleoside diphosphate kinase; KEGG: aae:aq_1590 nucleoside diphosphate kinase; nucleoside-diphosphate kinase complement(909783..910208) Hydrogenobaculum sp. Y04AAS1 6743782 YP_002121636.1 CDS HY04AAS1_0971 NC_011126.1 910299 910940 R PFAM: HhH-GPD family protein; KEGG: aae:aq_172 endonuclease III; HhH-GPD family protein complement(910299..910940) Hydrogenobaculum sp. Y04AAS1 6743783 YP_002121637.1 CDS HY04AAS1_0972 NC_011126.1 910937 911200 R KEGG: sul:SYO3AOP1_0793 FlhB domain protein; FlhB domain-containing protein complement(910937..911200) Hydrogenobaculum sp. Y04AAS1 6743784 YP_002121638.1 CDS HY04AAS1_0973 NC_011126.1 911202 912800 R KEGG: aae:aq_388 protein; hypothetical protein complement(911202..912800) Hydrogenobaculum sp. Y04AAS1 6743785 YP_002121639.1 CDS HY04AAS1_0974 NC_011126.1 912790 913722 R KEGG: aae:aq_852 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(912790..913722) Hydrogenobaculum sp. Y04AAS1 6743786 YP_002121640.1 CDS HY04AAS1_0975 NC_011126.1 913719 914393 R KEGG: aae:aq_2203 protein; hypothetical protein complement(913719..914393) Hydrogenobaculum sp. Y04AAS1 6743787 YP_002121641.1 CDS HY04AAS1_0976 NC_011126.1 914394 915128 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tdn:Tmden_1219 short chain dehydrogenase; short-chain dehydrogenase/reductase complement(914394..915128) Hydrogenobaculum sp. Y04AAS1 6743788 YP_002121642.1 CDS HY04AAS1_0978 NC_011126.1 916534 917988 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: aae:aq_206 nitrite reductase (NAD(P)H) large subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 916534..917988 Hydrogenobaculum sp. Y04AAS1 6743790 YP_002121643.1 CDS HY04AAS1_0979 NC_011126.1 918077 918262 D PFAM: ribosomal protein L31; KEGG: aae:aq_873a ribosomal protein L31; 50S ribosomal protein L31 918077..918262 Hydrogenobaculum sp. Y04AAS1 6743791 YP_002121644.1 CDS prfA NC_011126.1 918278 919348 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 918278..919348 Hydrogenobaculum sp. Y04AAS1 6743792 YP_002121645.1 CDS HY04AAS1_0981 NC_011126.1 919345 919437 D hypothetical protein 919345..919437 Hydrogenobaculum sp. Y04AAS1 6743793 YP_002121646.1 CDS HY04AAS1_0982 NC_011126.1 919434 920087 D PFAM: protein of unknown function DUF202; KEGG: aae:aq_913 hypothetical protein; hypothetical protein 919434..920087 Hydrogenobaculum sp. Y04AAS1 6743794 YP_002121647.1 CDS HY04AAS1_0983 NC_011126.1 920084 921367 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 920084..921367 Hydrogenobaculum sp. Y04AAS1 6743795 YP_002121648.1 CDS HY04AAS1_0984 NC_011126.1 921448 922185 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: aae:aq_1218 RNA polymerase sigma factor; RNA polymerase, sigma 28 subunit, FliA/WhiG 921448..922185 Hydrogenobaculum sp. Y04AAS1 6743796 YP_002121649.1 CDS HY04AAS1_0985 NC_011126.1 922182 923687 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sul:SYO3AOP1_1378 drug resistance transporter, EmrB/QacA subfamily; EmrB/QacA subfamily drug resistance transporter 922182..923687 Hydrogenobaculum sp. Y04AAS1 6743797 YP_002121650.1 CDS HY04AAS1_0986 NC_011126.1 923684 923995 D hypothetical protein 923684..923995 Hydrogenobaculum sp. Y04AAS1 6743798 YP_002121651.1 CDS HY04AAS1_0987 NC_011126.1 923992 924732 D hypothetical protein 923992..924732 Hydrogenobaculum sp. Y04AAS1 6743799 YP_002121652.1 CDS HY04AAS1_0988 NC_011126.1 924729 925595 D KEGG: aae:aq_1286 hypothetical protein; hypothetical protein 924729..925595 Hydrogenobaculum sp. Y04AAS1 6743800 YP_002121653.1 CDS HY04AAS1_0989 NC_011126.1 925644 926066 D PFAM: CoA-binding domain protein; KEGG: aae:aq_1869 hypothetical protein; CoA-binding domain-containing protein 925644..926066 Hydrogenobaculum sp. Y04AAS1 6743801 YP_002121654.1 CDS HY04AAS1_0990 NC_011126.1 926063 928897 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 926063..928897 Hydrogenobaculum sp. Y04AAS1 6743802 YP_002121655.1 CDS HY04AAS1_0991 NC_011126.1 928894 930270 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: aae:aq_501 phosphomannomutase; Phosphomannomutase 928894..930270 Hydrogenobaculum sp. Y04AAS1 6743803 YP_002121656.1 CDS HY04AAS1_0992 NC_011126.1 930279 930866 D PFAM: protein of unknown function DUF88; KEGG: aae:aq_200 hypothetical protein; hypothetical protein 930279..930866 Hydrogenobaculum sp. Y04AAS1 6743804 YP_002121657.1 CDS HY04AAS1_0993 NC_011126.1 930930 931271 D KEGG: ptr:460193 similar to TPRXL protein; TPRXL protein-like 930930..931271 Hydrogenobaculum sp. Y04AAS1 6743805 YP_002121658.1 CDS HY04AAS1_0994 NC_011126.1 931336 931896 D KEGG: aae:aq_880 hypothetical protein; hypothetical protein 931336..931896 Hydrogenobaculum sp. Y04AAS1 6743806 YP_002121659.1 CDS HY04AAS1_0995 NC_011126.1 931928 932305 D KEGG: sul:SYO3AOP1_0959 hypothetical protein; hypothetical protein 931928..932305 Hydrogenobaculum sp. Y04AAS1 6743807 YP_002121660.1 CDS HY04AAS1_0996 NC_011126.1 932437 932805 D KEGG: sul:SYO3AOP1_0958 peptidase C39 bacteriocin processing; peptidase C39 bacteriocin processing 932437..932805 Hydrogenobaculum sp. Y04AAS1 6743808 YP_002121661.1 CDS lysS NC_011126.1 932830 934539 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 932830..934539 Hydrogenobaculum sp. Y04AAS1 6743809 YP_002121662.1 CDS HY04AAS1_0998 NC_011126.1 934606 935601 D KEGG: aae:aq_975 biotin synthetase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 934606..935601 Hydrogenobaculum sp. Y04AAS1 6743810 YP_002121663.1 CDS HY04AAS1_0999 NC_011126.1 935592 936035 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aae:aq_903 hypothetical protein; zinc-binding CMP/dCMP deaminase 935592..936035 Hydrogenobaculum sp. Y04AAS1 6743811 YP_002121664.1 CDS HY04AAS1_1000 NC_011126.1 936040 936441 D PFAM: protein of unknown function UPF0047; KEGG: aae:aq_1965 hypothetical protein; hypothetical protein 936040..936441 Hydrogenobaculum sp. Y04AAS1 6743812 YP_002121665.1 CDS HY04AAS1_1001 NC_011126.1 936438 937754 D KEGG: aae:aq_1964 hypothetical zinc metalloprotease; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; zinc metalloprotease 936438..937754 Hydrogenobaculum sp. Y04AAS1 6743813 YP_002121666.1 CDS HY04AAS1_1002 NC_011126.1 937772 938710 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 937772..938710 Hydrogenobaculum sp. Y04AAS1 6743814 YP_002121667.1 CDS HY04AAS1_1003 NC_011126.1 938682 940379 D PFAM: ABC transporter transmembrane region; ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_1563 multidrug resistance protein; ABC transporter 938682..940379 Hydrogenobaculum sp. Y04AAS1 6743815 YP_002121668.1 CDS HY04AAS1_1004 NC_011126.1 940372 940872 R KEGG: aae:aq_408 hypothetical protein; hypothetical protein complement(940372..940872) Hydrogenobaculum sp. Y04AAS1 6743816 YP_002121669.1 CDS HY04AAS1_1005 NC_011126.1 940869 941873 R KEGG: aae:aq_1879 N-acetyl-gamma-glutamylphosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase complement(940869..941873) Hydrogenobaculum sp. Y04AAS1 6743817 YP_002121670.1 CDS rpsI NC_011126.1 941858 942298 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(941858..942298) Hydrogenobaculum sp. Y04AAS1 6743818 YP_002121671.1 CDS HY04AAS1_1007 NC_011126.1 942311 942745 R PFAM: ribosomal protein L13; KEGG: aae:aq_1877 50S ribosomal protein L13; 50S ribosomal protein L13 complement(942311..942745) Hydrogenobaculum sp. Y04AAS1 6743819 YP_002121672.1 CDS HY04AAS1_1008 NC_011126.1 942822 943853 R KEGG: aae:aq_1827 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(942822..943853) Hydrogenobaculum sp. Y04AAS1 6743820 YP_002121673.1 CDS HY04AAS1_1009 NC_011126.1 943850 944155 R hypothetical protein complement(943850..944155) Hydrogenobaculum sp. Y04AAS1 6743821 YP_002121674.1 CDS HY04AAS1_1010 NC_011126.1 944148 944933 R PFAM: protein of unknown function DUF1009; KEGG: aae:aq_1276 hypothetical protein; hypothetical protein complement(944148..944933) Hydrogenobaculum sp. Y04AAS1 6743822 YP_002121675.1 CDS HY04AAS1_1011 NC_011126.1 944948 946270 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase complement(944948..946270) Hydrogenobaculum sp. Y04AAS1 6743823 YP_002121676.1 CDS infB NC_011126.1 946277 948841 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(946277..948841) Hydrogenobaculum sp. Y04AAS1 6743824 YP_002121677.1 CDS HY04AAS1_1013 NC_011126.1 948988 949164 R hypothetical protein complement(948988..949164) Hydrogenobaculum sp. Y04AAS1 6743826 YP_002121678.1 CDS HY04AAS1_1014 NC_011126.1 949312 950820 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(949312..950820) Hydrogenobaculum sp. Y04AAS1 6743827 YP_002121679.1 CDS HY04AAS1_1015 NC_011126.1 950927 951475 R TIGRFAM: ATP synthase F1 subunit delta; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: aae:aq_1588 ATP synthase F1 delta chain; ATP synthase F1 subunit delta complement(950927..951475) Hydrogenobaculum sp. Y04AAS1 6743828 YP_002121680.1 CDS HY04AAS1_1016 NC_011126.1 951472 951954 R KEGG: aae:aq_1587 ATP synthase F0 subunit B; ATP synthase F0 subunit B complement(951472..951954) Hydrogenobaculum sp. Y04AAS1 6743829 YP_002121681.1 CDS HY04AAS1_1017 NC_011126.1 951958 952386 R PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: aae:aq_1586 ATP synthase F0 subunit B; H+transporting two-sector ATPase B/B' subunit complement(951958..952386) Hydrogenobaculum sp. Y04AAS1 6743830 YP_002121682.1 CDS smpB NC_011126.1 952481 952957 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 952481..952957 Hydrogenobaculum sp. Y04AAS1 6743831 YP_002121683.1 CDS HY04AAS1_1019 NC_011126.1 952957 955041 D KEGG: aae:aq_2046 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 952957..955041 Hydrogenobaculum sp. Y04AAS1 6743832 YP_002121684.1 CDS HY04AAS1_1020 NC_011126.1 955129 955386 R hypothetical protein complement(955129..955386) Hydrogenobaculum sp. Y04AAS1 6743834 YP_002121685.1 CDS HY04AAS1_1021 NC_011126.1 955401 956813 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(955401..956813) Hydrogenobaculum sp. Y04AAS1 6743835 YP_002121686.1 CDS HY04AAS1_1022 NC_011126.1 956953 957735 R KEGG: vfi:VF1884 hypothetical protein; hypothetical protein complement(956953..957735) Hydrogenobaculum sp. Y04AAS1 6743837 YP_002121687.1 CDS HY04AAS1_1023 NC_011126.1 957940 959046 D PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: aae:aq_245 phosphoribosylaminoimidazole carboxylase ATPase subunit; Phosphoribosylaminoimidazole carboxylase 957940..959046 Hydrogenobaculum sp. Y04AAS1 6743838 YP_002121688.1 CDS HY04AAS1_1024 NC_011126.1 959059 959832 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 959059..959832 Hydrogenobaculum sp. Y04AAS1 6743839 YP_002121689.1 CDS HY04AAS1_1025 NC_011126.1 959855 960328 D KEGG: sul:SYO3AOP1_0631 hypothetical protein; hypothetical protein 959855..960328 Hydrogenobaculum sp. Y04AAS1 6743840 YP_002121690.1 CDS HY04AAS1_1026 NC_011126.1 960332 961273 R KEGG: sul:SYO3AOP1_1151 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(960332..961273) Hydrogenobaculum sp. Y04AAS1 6743841 YP_002121691.1 CDS HY04AAS1_1027 NC_011126.1 961270 963597 R PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; KEGG: mse:Msed_0839 DNA topoisomerase, type IA, central domain protein; DNA topoisomerase type IA central domain-containing protein complement(961270..963597) Hydrogenobaculum sp. Y04AAS1 6743842 YP_002121692.1 CDS HY04AAS1_1028 NC_011126.1 963604 964764 R KEGG: aae:aq_1873 protein; hypothetical protein complement(963604..964764) Hydrogenobaculum sp. Y04AAS1 6743843 YP_002121693.1 CDS HY04AAS1_1029 NC_011126.1 964761 965354 R hypothetical protein complement(964761..965354) Hydrogenobaculum sp. Y04AAS1 6743844 YP_002121694.1 CDS HY04AAS1_1030 NC_011126.1 965356 966684 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: aae:aq_1871 peptide maturation; peptidase U62 modulator of DNA gyrase complement(965356..966684) Hydrogenobaculum sp. Y04AAS1 6743845 YP_002121695.1 CDS HY04AAS1_1031 NC_011126.1 966817 967092 D KEGG: afu:AF1464 hypothetical protein; hypothetical protein 966817..967092 Hydrogenobaculum sp. Y04AAS1 6743846 YP_002121696.1 CDS HY04AAS1_1032 NC_011126.1 967239 967667 D KEGG: aae:aq_615 protein; hypothetical protein 967239..967667 Hydrogenobaculum sp. Y04AAS1 6743847 YP_002121697.1 CDS HY04AAS1_1033 NC_011126.1 967714 968427 R PFAM: Lytic transglycosylase catalytic; KEGG: aae:aq_1579 invasion protein IagB; Lytic transglycosylase complement(967714..968427) Hydrogenobaculum sp. Y04AAS1 6743848 YP_002121698.1 CDS HY04AAS1_1034 NC_011126.1 968432 970078 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aae:aq_854 hypothetical protein; hypothetical protein complement(968432..970078) Hydrogenobaculum sp. Y04AAS1 6743849 YP_002121699.1 CDS HY04AAS1_1035 NC_011126.1 970080 970961 R PFAM: UspA domain protein; KEGG: aae:aq_855 hypothetical protein; UspA domain-containing protein complement(970080..970961) Hydrogenobaculum sp. Y04AAS1 6743850 YP_002121700.1 CDS HY04AAS1_1036 NC_011126.1 970939 971748 R PFAM: inositol monophosphatase; KEGG: aae:aq_1983 myo-inositol-1(or 4)-monophosphatase; Inositol-phosphate phosphatase complement(970939..971748) Hydrogenobaculum sp. Y04AAS1 6743851 YP_002121701.1 CDS HY04AAS1_1037 NC_011126.1 971755 972312 R PFAM: class II aldolase/adducin family protein; KEGG: aae:aq_1658 fuculose-1-phosphate aldolase; class II aldolase/adducin family protein complement(971755..972312) Hydrogenobaculum sp. Y04AAS1 6743852 YP_002121702.1 CDS HY04AAS1_1038 NC_011126.1 972300 973151 R TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: aae:aq_052 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(972300..973151) Hydrogenobaculum sp. Y04AAS1 6743853 YP_002121703.1 CDS HY04AAS1_1039 NC_011126.1 973117 973605 R PFAM: shikimate kinase; KEGG: aae:aq_2177 shikimate kinase; Shikimate kinase complement(973117..973605) Hydrogenobaculum sp. Y04AAS1 6743854 YP_002121704.1 CDS HY04AAS1_1040 NC_011126.1 973636 973974 R KEGG: aae:aq_420 protein; hypothetical protein complement(973636..973974) Hydrogenobaculum sp. Y04AAS1 6743855 YP_002121705.1 CDS HY04AAS1_1041 NC_011126.1 974042 974767 R PFAM: protein of unknown function DUF81; KEGG: aae:aq_127 hypothetical protein; hypothetical protein complement(974042..974767) Hydrogenobaculum sp. Y04AAS1 6743856 YP_002121706.1 CDS HY04AAS1_1042 NC_011126.1 974791 975405 R PFAM: Sporulation domain protein; KEGG: cyt:cce_0608 hypothetical protein; Sporulation domain-containing protein complement(974791..975405) Hydrogenobaculum sp. Y04AAS1 6743857 YP_002121707.1 CDS pheS NC_011126.1 975455 976477 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(975455..976477) Hydrogenobaculum sp. Y04AAS1 6743858 YP_002121708.1 CDS rplT NC_011126.1 976467 976817 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(976467..976817) Hydrogenobaculum sp. Y04AAS1 6743859 YP_002121709.1 CDS HY04AAS1_1045 NC_011126.1 976833 977474 R PFAM: ribonuclease HII/HIII; KEGG: sul:SYO3AOP1_0189 ribonuclease H; Ribonuclease H complement(976833..977474) Hydrogenobaculum sp. Y04AAS1 6743860 YP_002121710.1 CDS rplS NC_011126.1 977417 977821 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(977417..977821) Hydrogenobaculum sp. Y04AAS1 6743861 YP_002121711.1 CDS HY04AAS1_1047 NC_011126.1 977869 979032 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: pfo:PflO1_1664 C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein complement(977869..979032) Hydrogenobaculum sp. Y04AAS1 6743862 YP_002121712.1 CDS HY04AAS1_1048 NC_011126.1 979189 980049 D KEGG: aae:aq_1739 LytB protein; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 979189..980049 Hydrogenobaculum sp. Y04AAS1 6743863 YP_002121713.1 CDS HY04AAS1_1049 NC_011126.1 980081 981013 D TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein; KEGG: aae:aq_2043 cytochrome c biogenesis protein; cytochrome c-type biogenesis protein CcsB 980081..981013 Hydrogenobaculum sp. Y04AAS1 6743864 YP_002121714.1 CDS HY04AAS1_1050 NC_011126.1 981023 981856 D KEGG: aae:aq_869 quinolinate phosphoribosyl transferase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 981023..981856 Hydrogenobaculum sp. Y04AAS1 6743865 YP_002121715.1 CDS HY04AAS1_1051 NC_011126.1 981959 982228 D PFAM: histone family protein DNA-binding protein; KEGG: gme:Gmet_0355 histone-like DNA-binding protein; histone family protein DNA-binding protein 981959..982228 Hydrogenobaculum sp. Y04AAS1 6743866 YP_002121716.1 CDS HY04AAS1_1052 NC_011126.1 982287 982739 D KEGG: aae:aq_272 protein; hypothetical protein 982287..982739 Hydrogenobaculum sp. Y04AAS1 6743867 YP_002121717.1 CDS HY04AAS1_1053 NC_011126.1 982726 983484 D PFAM: ribosomal RNA adenine methylase transferase; KEGG: aae:aq_1816 dimethyladenosine transferase; ribosomal RNA adenine methylase transferase 982726..983484 Hydrogenobaculum sp. Y04AAS1 6743868 YP_002121718.1 CDS HY04AAS1_1054 NC_011126.1 983427 983870 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: aae:aq_1495 O-6-methylguanine-DNA-alkyltransferase; methylated-DNA/protein-cysteine methyltransferase complement(983427..983870) Hydrogenobaculum sp. Y04AAS1 6743869 YP_002121719.1 CDS HY04AAS1_1055 NC_011126.1 983969 985366 R KEGG: aae:aq_1862 hypothetical protein; hypothetical protein complement(983969..985366) Hydrogenobaculum sp. Y04AAS1 6743870 YP_002121720.1 CDS HY04AAS1_1056 NC_011126.1 985463 987262 R TIGRFAM: leucyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ia; tRNA synthetase class I (M); KEGG: aae:aq_351 leucyl-tRNA synthetase alpha subunit; leucyl-tRNA synthetase complement(985463..987262) Hydrogenobaculum sp. Y04AAS1 6743871 YP_002121721.1 CDS HY04AAS1_1057 NC_011126.1 987264 987815 R TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: sul:SYO3AOP1_1101 DJ-1 family protein; DJ-1 family protein complement(987264..987815) Hydrogenobaculum sp. Y04AAS1 6743872 YP_002121722.1 CDS HY04AAS1_1058 NC_011126.1 987815 988135 R hypothetical protein complement(987815..988135) Hydrogenobaculum sp. Y04AAS1 6743873 YP_002121723.1 CDS HY04AAS1_1059 NC_011126.1 988146 988379 R KEGG: aae:aq_1192a ferredoxin; ferredoxin complement(988146..988379) Hydrogenobaculum sp. Y04AAS1 6743874 YP_002121724.1 CDS HY04AAS1_1060 NC_011126.1 988550 988954 D hypothetical protein 988550..988954 Hydrogenobaculum sp. Y04AAS1 6743875 YP_002121725.1 CDS HY04AAS1_1061 NC_011126.1 988968 990851 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 988968..990851 Hydrogenobaculum sp. Y04AAS1 6743876 YP_002121726.1 CDS HY04AAS1_1062 NC_011126.1 990837 991454 R SMART: protein phosphatase 2C domain protein; KEGG: aae:aq_575 hypothetical protein; protein serine/threonine phosphatase complement(990837..991454) Hydrogenobaculum sp. Y04AAS1 6743877 YP_002121727.1 CDS HY04AAS1_1063 NC_011126.1 991451 992254 R PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: aae:aq_576 ser/thr protein kinase; serine/threonine protein kinase complement(991451..992254) Hydrogenobaculum sp. Y04AAS1 6743878 YP_002121728.1 CDS HY04AAS1_1064 NC_011126.1 992254 992997 R KEGG: aae:aq_749 pseudouridine synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A complement(992254..992997) Hydrogenobaculum sp. Y04AAS1 6743879 YP_002121729.1 CDS HY04AAS1_1065 NC_011126.1 992994 994673 R KEGG: mma:MM_3109 glycogen phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; alpha-glucan phosphorylase complement(992994..994673) Hydrogenobaculum sp. Y04AAS1 6743880 YP_002121730.1 CDS HY04AAS1_1066 NC_011126.1 994679 995464 R KEGG: aae:aq_2093 thiol:disulfide interchange protein; thiol:disulfide interchange protein complement(994679..995464) Hydrogenobaculum sp. Y04AAS1 6743881 YP_002121731.1 CDS HY04AAS1_1067 NC_011126.1 995503 996453 R PFAM: glycosyl transferase family 9; KEGG: aae:aq_145 ADP-heptose:LPS heptosyltransferase; glycosyl transferase family 9 complement(995503..996453) Hydrogenobaculum sp. Y04AAS1 6743882 YP_002121732.1 CDS HY04AAS1_1068 NC_011126.1 996464 996892 R KEGG: aae:aq_142 protein; hypothetical protein complement(996464..996892) Hydrogenobaculum sp. Y04AAS1 6743883 YP_002121733.1 CDS HY04AAS1_1069 NC_011126.1 996894 998291 R TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_2064 glutamate synthase (NADPH) small chain; glutamate synthase (NADPH), homotetrameric complement(996894..998291) Hydrogenobaculum sp. Y04AAS1 6743884 YP_002121734.1 CDS HY04AAS1_1070 NC_011126.1 998295 999062 R KEGG: aae:aq_2098 hypothetical protein; 2-polyprenylphenol hydroxylase-like protein complement(998295..999062) Hydrogenobaculum sp. Y04AAS1 6743885 YP_002121735.1 CDS HY04AAS1_1071 NC_011126.1 999055 1000053 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_403 hypothetical protein; Radical SAM domain-containing protein complement(999055..1000053) Hydrogenobaculum sp. Y04AAS1 6743886 YP_002121736.1 CDS HY04AAS1_1072 NC_011126.1 1000064 1000411 R PFAM: protein of unknown function DUF1291; KEGG: sai:Saci_1075 hypothetical protein; hypothetical protein complement(1000064..1000411) Hydrogenobaculum sp. Y04AAS1 6743887 YP_002121737.1 CDS HY04AAS1_1073 NC_011126.1 1000482 1000928 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1000482..1000928) Hydrogenobaculum sp. Y04AAS1 6743888 YP_002121738.1 CDS HY04AAS1_1074 NC_011126.1 1000980 1001381 R PFAM: DsrE family protein; KEGG: aae:aq_401 hypothetical protein; DsrE family protein complement(1000980..1001381) Hydrogenobaculum sp. Y04AAS1 6743889 YP_002121739.1 CDS HY04AAS1_1075 NC_011126.1 1001378 1001638 R KEGG: mbu:Mbur_0102 hypothetical protein; hypothetical protein complement(1001378..1001638) Hydrogenobaculum sp. Y04AAS1 6743890 YP_002121740.1 CDS HY04AAS1_1076 NC_011126.1 1001635 1002111 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1001635..1002111) Hydrogenobaculum sp. Y04AAS1 6743891 YP_002121741.1 CDS HY04AAS1_1077 NC_011126.1 1002172 1003134 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: aae:aq_400 heterodisulfide reductase subunit B; CoB--CoM heterodisulfide reductase complement(1002172..1003134) Hydrogenobaculum sp. Y04AAS1 6743892 YP_002121742.1 CDS HY04AAS1_1078 NC_011126.1 1003147 1003908 R KEGG: aae:aq_398 heterodisulfide reductase subunit C; heterodisulfide reductase subunit C complement(1003147..1003908) Hydrogenobaculum sp. Y04AAS1 6743893 YP_002121743.1 CDS HY04AAS1_1079 NC_011126.1 1003921 1004694 R KEGG: aae:aq_397 hypothetical protein; hypothetical protein complement(1003921..1004694) Hydrogenobaculum sp. Y04AAS1 6743894 YP_002121744.1 CDS HY04AAS1_1080 NC_011126.1 1004694 1005752 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_395 heterodisulfide reductase subunit A; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1004694..1005752) Hydrogenobaculum sp. Y04AAS1 6743895 YP_002121745.1 CDS HY04AAS1_1081 NC_011126.1 1005773 1007089 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sso:SSO1129 Heterodisulfite reductase, subunit B (HdrB-1); hypothetical protein complement(1005773..1007089) Hydrogenobaculum sp. Y04AAS1 6743896 YP_002121746.1 CDS HY04AAS1_1082 NC_011126.1 1007140 1007862 R KEGG: aae:aq_391 hypothetical protein; hypothetical protein complement(1007140..1007862) Hydrogenobaculum sp. Y04AAS1 6743897 YP_002121747.1 CDS HY04AAS1_1083 NC_011126.1 1007876 1008304 R KEGG: aae:aq_390 hypothetical protein; hypothetical protein complement(1007876..1008304) Hydrogenobaculum sp. Y04AAS1 6743898 YP_002121748.1 CDS HY04AAS1_1084 NC_011126.1 1008434 1008967 R KEGG: aae:aq_389 hypothetical protein; hypothetical protein complement(1008434..1008967) Hydrogenobaculum sp. Y04AAS1 6743899 YP_002121749.1 CDS HY04AAS1_1085 NC_011126.1 1008978 1009211 R PFAM: SirA family protein; KEGG: rma:Rmag_0225 SirA family protein; SirA family protein complement(1008978..1009211) Hydrogenobaculum sp. Y04AAS1 6743900 YP_002121750.1 CDS HY04AAS1_1086 NC_011126.1 1009316 1009864 R PFAM: protein of unknown function DUF507; KEGG: aae:aq_1752 hypothetical protein; hypothetical protein complement(1009316..1009864) Hydrogenobaculum sp. Y04AAS1 6743901 YP_002121751.1 CDS HY04AAS1_1087 NC_011126.1 1009876 1010286 R TIGRFAM: ATP synthase F1 subunit epsilon; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: aae:aq_673 ATP synthase F1 epsilon subunit; ATP synthase F1 subunit epsilon complement(1009876..1010286) Hydrogenobaculum sp. Y04AAS1 6743902 YP_002121752.1 CDS HY04AAS1_1088 NC_011126.1 1010362 1011558 D KEGG: aae:aq_1882 DNA polymerase III beta chain; TIGRFAM: DNA polymerase III beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1010362..1011558 Hydrogenobaculum sp. Y04AAS1 6743903 YP_002121753.1 CDS HY04AAS1_1089 NC_011126.1 1011583 1012326 D PFAM: conserved hypothetical protein; KEGG: aae:aq_1884 hypothetical protein; hypothetical protein 1011583..1012326 Hydrogenobaculum sp. Y04AAS1 6743904 YP_002121754.1 CDS HY04AAS1_1090 NC_011126.1 1012323 1013465 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: aae:aq_1886 ATP-dependent dsDNA exonuclease; nuclease SbcCD, D subunit 1012323..1013465 Hydrogenobaculum sp. Y04AAS1 6743905 YP_002121755.1 CDS HY04AAS1_1091 NC_011126.1 1013533 1014381 D PFAM: band 7 protein; KEGG: dra:DR_2143 hypothetical protein; hypothetical protein 1013533..1014381 Hydrogenobaculum sp. Y04AAS1 6743906 YP_002121756.1 CDS HY04AAS1_1092 NC_011126.1 1014378 1014851 D PFAM: protein of unknown function DUF107; KEGG: abc:ACICU_03009 membrane protein; hypothetical protein 1014378..1014851 Hydrogenobaculum sp. Y04AAS1 6743907 YP_002121757.1 CDS HY04AAS1_1093 NC_011126.1 1015120 1015833 D PFAM: dienelactone hydrolase; KEGG: rba:RB5825 probable dienelactone hydrolase; dienelactone hydrolase 1015120..1015833 Hydrogenobaculum sp. Y04AAS1 6743908 YP_002121758.1 CDS HY04AAS1_1094 NC_011126.1 1015830 1016171 D PFAM: protein of unknown function DUF488; KEGG: sso:SSO1867 hypothetical protein; hypothetical protein 1015830..1016171 Hydrogenobaculum sp. Y04AAS1 6743909 YP_002121759.1 CDS HY04AAS1_1095 NC_011126.1 1016147 1016605 D PFAM: GCN5-related N-acetyltransferase; KEGG: aae:aq_1359 hypothetical protein; GCN5-like N-acetyltransferase 1016147..1016605 Hydrogenobaculum sp. Y04AAS1 6743910 YP_002121760.1 CDS HY04AAS1_1096 NC_011126.1 1016627 1017040 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: aae:aq_635 hypothetical protein; protein tyrosine phosphatase 1016627..1017040 Hydrogenobaculum sp. Y04AAS1 6743911 YP_002121761.1 CDS HY04AAS1_1097 NC_011126.1 1017021 1018070 D PFAM: glycosyl transferase group 1; KEGG: sul:SYO3AOP1_1197 glycosyl transferase group 1; group 1 glycosyl transferase 1017021..1018070 Hydrogenobaculum sp. Y04AAS1 6743912 YP_002121762.1 CDS HY04AAS1_1098 NC_011126.1 1018078 1019403 D KEGG: pfh:PFHG_04642 conserved hypothetical protein; hypothetical protein 1018078..1019403 Hydrogenobaculum sp. Y04AAS1 6743913 YP_002121763.1 CDS HY04AAS1_1099 NC_011126.1 1019476 1019778 D PFAM: protein of unknown function DUF77; KEGG: aae:aq_2067 hypothetical protein; hypothetical protein 1019476..1019778 Hydrogenobaculum sp. Y04AAS1 6743914 YP_002121764.1 CDS HY04AAS1_1100 NC_011126.1 1019779 1020120 R KEGG: aae:aq_853 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl tetrahydrobiopterin synthase complement(1019779..1020120) Hydrogenobaculum sp. Y04AAS1 6743915 YP_002121765.1 CDS HY04AAS1_1101 NC_011126.1 1020120 1020356 R hypothetical protein complement(1020120..1020356) Hydrogenobaculum sp. Y04AAS1 6743916 YP_002121766.1 CDS HY04AAS1_1102 NC_011126.1 1020367 1021260 R PFAM: YicC domain protein; KEGG: sul:SYO3AOP1_1469 domain of unknown function DUF1732; YicC domain-containing protein complement(1020367..1021260) Hydrogenobaculum sp. Y04AAS1 6743917 YP_002121767.1 CDS HY04AAS1_1103 NC_011126.1 1021245 1022606 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(1021245..1022606) Hydrogenobaculum sp. Y04AAS1 6743918 YP_002121768.1 CDS HY04AAS1_1104 NC_011126.1 1022871 1023182 R KEGG: nis:NIS_0600 hypothetical protein; hypothetical protein complement(1022871..1023182) Hydrogenobaculum sp. Y04AAS1 6743920 YP_002121769.1 CDS HY04AAS1_1105 NC_011126.1 1023151 1023387 R hypothetical protein complement(1023151..1023387) Hydrogenobaculum sp. Y04AAS1 6743921 YP_002121770.1 CDS HY04AAS1_1106 NC_011126.1 1023510 1024625 R PFAM: cell cycle protein; KEGG: aae:aq_025 rod shape determining protein RodA; cell cycle protein complement(1023510..1024625) Hydrogenobaculum sp. Y04AAS1 6743922 YP_002121771.1 CDS HY04AAS1_1107 NC_011126.1 1024612 1025322 R PFAM: phosphatidate cytidylyltransferase; KEGG: aae:aq_1249 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(1024612..1025322) Hydrogenobaculum sp. Y04AAS1 6743923 YP_002121772.1 CDS HY04AAS1_1108 NC_011126.1 1025319 1026137 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sul:SYO3AOP1_0641 tol-pal system protein YbgF; hypothetical protein complement(1025319..1026137) Hydrogenobaculum sp. Y04AAS1 6743924 YP_002121773.1 CDS cysS NC_011126.1 1026188 1027654 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1026188..1027654 Hydrogenobaculum sp. Y04AAS1 6743925 YP_002121774.1 CDS HY04AAS1_1110 NC_011126.1 1027654 1028454 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: aae:aq_270 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1027654..1028454 Hydrogenobaculum sp. Y04AAS1 6743926 YP_002121775.1 CDS HY04AAS1_1111 NC_011126.1 1028476 1029699 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sgr:SGR_4259 D-alanyl-D-alanine carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 1028476..1029699 Hydrogenobaculum sp. Y04AAS1 6743927 YP_002121776.1 CDS HY04AAS1_1112 NC_011126.1 1029696 1030115 D hypothetical protein 1029696..1030115 Hydrogenobaculum sp. Y04AAS1 6743928 YP_002121777.1 CDS HY04AAS1_1113 NC_011126.1 1030117 1030890 D KEGG: ath:AT4G11980 ATNUDT14 (Arabidopsis thaliana Nudix hydrolase homolog 14); hydrolase; hypothetical protein 1030117..1030890 Hydrogenobaculum sp. Y04AAS1 6743929 YP_002121778.1 CDS HY04AAS1_1114 NC_011126.1 1030926 1031681 D TIGRFAM: TonB family protein; KEGG: aae:aq_1982 protein; TonB family protein 1030926..1031681 Hydrogenobaculum sp. Y04AAS1 6743930 YP_002121779.1 CDS HY04AAS1_1115 NC_011126.1 1031685 1032287 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: aae:aq_1603 hypothetical protein; sigma 54 modulation protein/30S ribosomal protein S30EA 1031685..1032287 Hydrogenobaculum sp. Y04AAS1 6743931 YP_002121780.1 CDS HY04AAS1_1116 NC_011126.1 1032290 1033792 D TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: aae:aq_973 protein export membrane protein SecD; protein-export membrane protein SecD 1032290..1033792 Hydrogenobaculum sp. Y04AAS1 6743932 YP_002121781.1 CDS HY04AAS1_1117 NC_011126.1 1033789 1034625 D PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: aae:aq_1601 leader peptidase (prepilin peptidase) / N-methyltransferase; peptidase A24A domain-containing protein 1033789..1034625 Hydrogenobaculum sp. Y04AAS1 6743933 YP_002121782.1 CDS HY04AAS1_1118 NC_011126.1 1034616 1034894 D KEGG: tcx:Tcr_1973 twin-arginine translocation protein TatB; twin-arginine translocation protein TatB 1034616..1034894 Hydrogenobaculum sp. Y04AAS1 6743934 YP_002121783.1 CDS HY04AAS1_1119 NC_011126.1 1034857 1035582 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: aae:aq_1267 sec-independant protein translocase; Sec-independent protein translocase, TatC subunit 1034857..1035582 Hydrogenobaculum sp. Y04AAS1 6743935 YP_002121784.1 CDS HY04AAS1_1120 NC_011126.1 1035653 1037317 D PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: aae:aq_2101 carbamoyl-phosphate synthase large chain; Carbamoyl-phosphate synthase L chain ATP-binding 1035653..1037317 Hydrogenobaculum sp. Y04AAS1 6743936 YP_002121785.1 CDS HY04AAS1_1121 NC_011126.1 1039776 1040720 D KEGG: sul:SYO3AOP1_1000 hypothetical protein; hypothetical protein 1039776..1040720 Hydrogenobaculum sp. Y04AAS1 6743937 YP_002121786.1 CDS HY04AAS1_1122 NC_011126.1 1040771 1040935 R hypothetical protein complement(1040771..1040935) Hydrogenobaculum sp. Y04AAS1 6743938 YP_002121787.1 CDS HY04AAS1_1123 NC_011126.1 1041346 1042014 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: cps:CPS_2411 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1041346..1042014 Hydrogenobaculum sp. Y04AAS1 6743939 YP_002121788.1 CDS HY04AAS1_1124 NC_011126.1 1042030 1042146 D hypothetical protein 1042030..1042146 Hydrogenobaculum sp. Y04AAS1 6743940 YP_002121789.1 CDS HY04AAS1_1125 NC_011126.1 1042163 1042639 D KEGG: amr:AM1_2734 hypothetical protein; hypothetical protein 1042163..1042639 Hydrogenobaculum sp. Y04AAS1 6743941 YP_002121790.1 CDS HY04AAS1_1126 NC_011126.1 1042686 1043717 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO0137 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1042686..1043717 Hydrogenobaculum sp. Y04AAS1 6743942 YP_002121791.1 CDS HY04AAS1_1127 NC_011126.1 1043830 1044417 D hypothetical protein 1043830..1044417 Hydrogenobaculum sp. Y04AAS1 6743943 YP_002121792.1 CDS HY04AAS1_1128 NC_011126.1 1044691 1045677 R KEGG: cch:Cag_0368 hypothetical protein; hypothetical protein complement(1044691..1045677) Hydrogenobaculum sp. Y04AAS1 6743944 YP_002121793.1 CDS HY04AAS1_1129 NC_011126.1 1045937 1046218 D PFAM: ribosomal protein S20; KEGG: aae:aq_1767 30S ribosomal protein S20; 30S ribosomal protein S20 1045937..1046218 Hydrogenobaculum sp. Y04AAS1 6743945 YP_002121794.1 CDS HY04AAS1_1130 NC_011126.1 1046205 1046786 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: aae:aq_711 protein; hypothetical protein 1046205..1046786 Hydrogenobaculum sp. Y04AAS1 6743946 YP_002121795.1 CDS HY04AAS1_1131 NC_011126.1 1046783 1047484 D KEGG: sul:SYO3AOP1_0856 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1046783..1047484 Hydrogenobaculum sp. Y04AAS1 6743947 YP_002121796.1 CDS HY04AAS1_1132 NC_011126.1 1047832 1049421 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: aae:aq_866 NADH dehydrogenase I chain L; NADH dehydrogenase (quinone) 1047832..1049421 Hydrogenobaculum sp. Y04AAS1 6743948 YP_002121797.1 CDS HY04AAS1_1133 NC_011126.1 1049651 1049851 R KEGG: cvi:CV_3609 hypothetical protein; hypothetical protein complement(1049651..1049851) Hydrogenobaculum sp. Y04AAS1 6743949 YP_002121798.1 CDS HY04AAS1_1134 NC_011126.1 1049939 1051183 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(1049939..1051183) Hydrogenobaculum sp. Y04AAS1 6743950 YP_002121799.1 CDS HY04AAS1_1135 NC_011126.1 1051444 1051779 R PFAM: helix-turn-helix HxlR type; KEGG: npu:Npun_R3268 transcriptional regulator, HxlR family; HxlR family transcriptional regulator complement(1051444..1051779) Hydrogenobaculum sp. Y04AAS1 6743952 YP_002121800.1 CDS HY04AAS1_1136 NC_011126.1 1051776 1052825 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Allinase-like; KEGG: sul:SYO3AOP1_1771 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase complement(1051776..1052825) Hydrogenobaculum sp. Y04AAS1 6743953 YP_002121801.1 CDS HY04AAS1_1137 NC_011126.1 1052871 1053320 D KEGG: aae:aq_1178 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 1052871..1053320 Hydrogenobaculum sp. Y04AAS1 6743954 YP_002121802.1 CDS HY04AAS1_1138 NC_011126.1 1053605 1053976 D hypothetical protein 1053605..1053976 Hydrogenobaculum sp. Y04AAS1 6743955 YP_002121803.1 CDS HY04AAS1_1139 NC_011126.1 1054081 1054815 R KEGG: saz:Sama_3121 hypothetical protein; hypothetical protein complement(1054081..1054815) Hydrogenobaculum sp. Y04AAS1 6743956 YP_002121804.1 CDS HY04AAS1_1140 NC_011126.1 1054818 1055498 R KEGG: dps:DP0107 similar to signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I complement(1054818..1055498) Hydrogenobaculum sp. Y04AAS1 6743957 YP_002121805.1 CDS HY04AAS1_1141 NC_011126.1 1055566 1056783 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sul:SYO3AOP1_0582 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 1055566..1056783 Hydrogenobaculum sp. Y04AAS1 6743958 YP_002121806.1 CDS HY04AAS1_1142 NC_011126.1 1056806 1057012 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: pla:Plav_3289 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 1056806..1057012 Hydrogenobaculum sp. Y04AAS1 6743959 YP_002121807.1 CDS thiG NC_011126.1 1057013 1057804 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1057013..1057804 Hydrogenobaculum sp. Y04AAS1 6743960 YP_002121808.1 CDS HY04AAS1_1144 NC_011126.1 1057801 1059126 D KEGG: aae:aq_2015 protoporphyrinogen oxidase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase 1057801..1059126 Hydrogenobaculum sp. Y04AAS1 6743961 YP_002121809.1 CDS HY04AAS1_1145 NC_011126.1 1059113 1059739 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: aae:aq_1457 ubiquinone/menaquinone biosynthesis methlytransferase ubiE; type 11 methyltransferase 1059113..1059739 Hydrogenobaculum sp. Y04AAS1 6743962 YP_002121810.1 CDS HY04AAS1_1146 NC_011126.1 1059748 1060470 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: cbe:Cbei_2840 extradiol ring-cleavage dioxygenase, class III protein, subunit B; Extradiol ring-cleavage dioxygenase class III protein subunit B 1059748..1060470 Hydrogenobaculum sp. Y04AAS1 6743963 YP_002121811.1 CDS HY04AAS1_1147 NC_011126.1 1060503 1060817 D PFAM: DNA polymerase subunit beta; KEGG: nis:NIS_1265 hypothetical protein; DNA polymerase subunit beta 1060503..1060817 Hydrogenobaculum sp. Y04AAS1 6743964 YP_002121812.1 CDS HY04AAS1_1148 NC_011126.1 1060855 1061781 D KEGG: aae:aq_1273 lipoprotein; lipoprotein 1060855..1061781 Hydrogenobaculum sp. Y04AAS1 6743965 YP_002121813.1 CDS HY04AAS1_1149 NC_011126.1 1061774 1062106 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: aae:aq_1272 hypothetical protein; iojap-like protein 1061774..1062106 Hydrogenobaculum sp. Y04AAS1 6743966 YP_002121814.1 CDS HY04AAS1_1150 NC_011126.1 1062103 1063206 D KEGG: aae:aq_1558 hypothetical protein; hypothetical protein 1062103..1063206 Hydrogenobaculum sp. Y04AAS1 6743967 YP_002121815.1 CDS HY04AAS1_1151 NC_011126.1 1063203 1063880 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lsp:Bsph_2783 response regulator ArlR; winged helix family two component transcriptional regulator 1063203..1063880 Hydrogenobaculum sp. Y04AAS1 6743968 YP_002121816.1 CDS HY04AAS1_1152 NC_011126.1 1063897 1066170 D KEGG: aae:aq_1242 DNA mismatch repair protein MutS; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; MutS2 family protein 1063897..1066170 Hydrogenobaculum sp. Y04AAS1 6743969 YP_002121817.1 CDS HY04AAS1_1153 NC_011126.1 1066172 1067230 D PFAM: MscS Mechanosensitive ion channel; KEGG: ana:alr1196 hypothetical protein; MscS Mechanosensitive ion channel 1066172..1067230 Hydrogenobaculum sp. Y04AAS1 6743970 YP_002121818.1 CDS HY04AAS1_1154 NC_011126.1 1067243 1068181 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; TrkA-N domain protein; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: bxe:Bxe_A3788 transmembrane oxidoreductase protein; NAD-dependent epimerase/dehydratase 1067243..1068181 Hydrogenobaculum sp. Y04AAS1 6743971 YP_002121819.1 CDS HY04AAS1_1155 NC_011126.1 1068181 1069452 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: pnu:Pnuc_0325 hypothetical protein; hypothetical protein 1068181..1069452 Hydrogenobaculum sp. Y04AAS1 6743972 YP_002121820.1 CDS HY04AAS1_1156 NC_011126.1 1069449 1070801 R KEGG: aae:aq_1236 hypothetical protein; hypothetical protein complement(1069449..1070801) Hydrogenobaculum sp. Y04AAS1 6743973 YP_002121821.1 CDS HY04AAS1_1157 NC_011126.1 1070803 1072311 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aae:aq_1792 transcriptional regulator (NtrC family); NifA subfamily transcriptional regulator complement(1070803..1072311) Hydrogenobaculum sp. Y04AAS1 6743974 YP_002121822.1 CDS HY04AAS1_1158 NC_011126.1 1072304 1073239 R PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: sul:SYO3AOP1_1528 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein complement(1072304..1073239) Hydrogenobaculum sp. Y04AAS1 6743975 YP_002121823.1 CDS HY04AAS1_1159 NC_011126.1 1073339 1073971 D PFAM: NLP/P60 protein; KEGG: gme:Gmet_1169 NLP/P60:peptidoglycan-binding LysM; NLP/P60 protein 1073339..1073971 Hydrogenobaculum sp. Y04AAS1 6743976 YP_002121824.1 CDS HY04AAS1_1160 NC_011126.1 1074010 1075062 D KEGG: ava:Ava_2455 ErfK/YbiS/YcfS/YnhG; hypothetical protein 1074010..1075062 Hydrogenobaculum sp. Y04AAS1 6743977 YP_002121825.1 CDS HY04AAS1_1161 NC_011126.1 1075163 1075633 D KEGG: aae:aq_957 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1075163..1075633 Hydrogenobaculum sp. Y04AAS1 6743978 YP_002121826.1 CDS HY04AAS1_1162 NC_011126.1 1075603 1076367 D PFAM: Patatin; KEGG: aae:aq_1386 hypothetical protein; Patatin 1075603..1076367 Hydrogenobaculum sp. Y04AAS1 6743979 YP_002121827.1 CDS HY04AAS1_1163 NC_011126.1 1076480 1077073 D PFAM: cytochrome c class I; KEGG: rfr:Rfer_2468 cytochrome c, class I; cytochrome c class I 1076480..1077073 Hydrogenobaculum sp. Y04AAS1 6743980 YP_002121828.1 CDS HY04AAS1_1164 NC_011126.1 1077140 1078534 D KEGG: aae:aq_1450 periplasmic serine protease; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1077140..1078534 Hydrogenobaculum sp. Y04AAS1 6743981 YP_002121829.1 CDS dapF NC_011126.1 1078536 1079369 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1078536..1079369 Hydrogenobaculum sp. Y04AAS1 6743982 YP_002121830.1 CDS HY04AAS1_1166 NC_011126.1 1079369 1079785 D KEGG: aae:aq_194 protein; hypothetical protein 1079369..1079785 Hydrogenobaculum sp. Y04AAS1 6743983 YP_002121831.1 CDS HY04AAS1_1167 NC_011126.1 1079852 1081066 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: aae:aq_1639 oxido/reductase iron sulfur protein; hypothetical protein 1079852..1081066 Hydrogenobaculum sp. Y04AAS1 6743984 YP_002121832.1 CDS HY04AAS1_1168 NC_011126.1 1081151 1081993 D PFAM: protein of unknown function DUF191; KEGG: aae:aq_313 hypothetical protein; hypothetical protein 1081151..1081993 Hydrogenobaculum sp. Y04AAS1 6743985 YP_002121833.1 CDS HY04AAS1_1169 NC_011126.1 1082005 1082649 D KEGG: aae:aq_1369 protein; hypothetical protein 1082005..1082649 Hydrogenobaculum sp. Y04AAS1 6743986 YP_002121834.1 CDS HY04AAS1_1170 NC_011126.1 1082646 1083095 D PFAM: phosphatidylglycerophosphatase A; KEGG: aae:aq_314 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 1082646..1083095 Hydrogenobaculum sp. Y04AAS1 6743987 YP_002121835.1 CDS HY04AAS1_1171 NC_011126.1 1083092 1085842 D KEGG: sul:SYO3AOP1_0767 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1083092..1085842 Hydrogenobaculum sp. Y04AAS1 6743988 YP_002121836.1 CDS HY04AAS1_1172 NC_011126.1 1085860 1086144 D hypothetical protein 1085860..1086144 Hydrogenobaculum sp. Y04AAS1 6743989 YP_002121837.1 CDS HY04AAS1_1173 NC_011126.1 1086147 1086704 D PFAM: thiamine monophosphate synthase; KEGG: aae:aq_1366 thiamine phosphate synthase; Thiamine-phosphate diphosphorylase 1086147..1086704 Hydrogenobaculum sp. Y04AAS1 6743990 YP_002121838.1 CDS HY04AAS1_1174 NC_011126.1 1086803 1088488 D TIGRFAM: transposase ; transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB; KEGG: sul:SYO3AOP1_0092 transposase; transposase 1086803..1088488 Hydrogenobaculum sp. Y04AAS1 6743991 YP_002121839.1 CDS HY04AAS1_1175 NC_011126.1 1088500 1088706 D KEGG: aae:aq_374 hypothetical protein; hypothetical protein 1088500..1088706 Hydrogenobaculum sp. Y04AAS1 6743992 YP_002121840.1 CDS HY04AAS1_1176 NC_011126.1 1088966 1089175 D PFAM: protein of unknown function UPF0150; KEGG: ana:asl2437 hypothetical protein; hypothetical protein 1088966..1089175 Hydrogenobaculum sp. Y04AAS1 6743993 YP_002121841.1 CDS HY04AAS1_1178 NC_011126.1 1089450 1090235 R SMART: PDZ/DHR/GLGF domain protein; KEGG: aae:aq_1473 protein; PDZ/DHR/GLGF domain-containing protein complement(1089450..1090235) Hydrogenobaculum sp. Y04AAS1 6743995 YP_002121842.1 CDS HY04AAS1_1179 NC_011126.1 1090232 1090660 R KEGG: aae:aq_1465 protein; hypothetical protein complement(1090232..1090660) Hydrogenobaculum sp. Y04AAS1 6743996 YP_002121843.1 CDS HY04AAS1_1180 NC_011126.1 1090642 1091610 R KEGG: aae:aq_1843 hypothetical protein; hypothetical protein complement(1090642..1091610) Hydrogenobaculum sp. Y04AAS1 6743997 YP_002121844.1 CDS HY04AAS1_1181 NC_011126.1 1091611 1091997 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1091611..1091997) Hydrogenobaculum sp. Y04AAS1 6743998 YP_002121845.1 CDS HY04AAS1_1182 NC_011126.1 1092060 1093805 D PFAM: extracellular solute-binding protein family 5; KEGG: aae:aq_1441 peptide transport system substrate-binding protein; family 5 extracellular solute-binding protein 1092060..1093805 Hydrogenobaculum sp. Y04AAS1 6743999 YP_002121846.1 CDS HY04AAS1_1183 NC_011126.1 1093905 1095452 D TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: aae:aq_2090 2-isopropylmalate synthase; 2-isopropylmalate synthase 1093905..1095452 Hydrogenobaculum sp. Y04AAS1 6744000 YP_002121847.1 CDS HY04AAS1_1184 NC_011126.1 1095449 1096270 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: aae:aq_901 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(1095449..1096270) Hydrogenobaculum sp. Y04AAS1 6744001 YP_002121848.1 CDS mraY NC_011126.1 1096267 1097346 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1096267..1097346) Hydrogenobaculum sp. Y04AAS1 6744002 YP_002121849.1 CDS HY04AAS1_1186 NC_011126.1 1097347 1097910 R KEGG: aae:aq_054 protein; hypothetical protein complement(1097347..1097910) Hydrogenobaculum sp. Y04AAS1 6744003 YP_002121850.1 CDS HY04AAS1_1187 NC_011126.1 1097907 1098497 R PFAM: protein of unknown function DUF205; KEGG: aae:aq_676 hypothetical protein; hypothetical protein complement(1097907..1098497) Hydrogenobaculum sp. Y04AAS1 6744004 YP_002121851.1 CDS HY04AAS1_1188 NC_011126.1 1098499 1099089 R SMART: phospholipase D/Transphosphatidylase; KEGG: kcr:Kcr_0268 phospholipase D/transphosphatidylase; phospholipase D/Transphosphatidylase complement(1098499..1099089) Hydrogenobaculum sp. Y04AAS1 6744005 YP_002121852.1 CDS HY04AAS1_1189 NC_011126.1 1099086 1100339 R KEGG: aae:aq_742 phosphoribosylamine-glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; phosphoribosylamine/glycine ligase complement(1099086..1100339) Hydrogenobaculum sp. Y04AAS1 6744006 YP_002121853.1 CDS HY04AAS1_1190 NC_011126.1 1100336 1100596 R KEGG: sul:SYO3AOP1_1058 hypothetical protein; hypothetical protein complement(1100336..1100596) Hydrogenobaculum sp. Y04AAS1 6744007 YP_002121854.1 CDS HY04AAS1_1191 NC_011126.1 1100658 1101275 R PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aae:aq_407 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1100658..1101275) Hydrogenobaculum sp. Y04AAS1 6744008 YP_002121855.1 CDS HY04AAS1_1192 NC_011126.1 1101335 1102000 R PFAM: type IV pilus assembly PilZ; KEGG: gme:Gmet_0191 hypothetical protein; type IV pilus assembly PilZ complement(1101335..1102000) Hydrogenobaculum sp. Y04AAS1 6744009 YP_002121856.1 CDS HY04AAS1_1193 NC_011126.1 1102018 1102686 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1102018..1102686) Hydrogenobaculum sp. Y04AAS1 6744010 YP_002121857.1 CDS uvrA NC_011126.1 1102687 1105485 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1102687..1105485) Hydrogenobaculum sp. Y04AAS1 6744011 YP_002121858.1 CDS HY04AAS1_1195 NC_011126.1 1105463 1105993 R PFAM: protein of unknown function DUF88; KEGG: aae:aq_430 hypothetical protein; hypothetical protein complement(1105463..1105993) Hydrogenobaculum sp. Y04AAS1 6744012 YP_002121859.1 CDS HY04AAS1_1196 NC_011126.1 1105990 1106580 R PFAM: GrpE protein; KEGG: aae:aq_433 heat shock protein GrpE; GrpE protein complement(1105990..1106580) Hydrogenobaculum sp. Y04AAS1 6744013 YP_002121860.1 CDS HY04AAS1_1197 NC_011126.1 1106614 1107462 R KEGG: aae:aq_2080 proteinase IV; TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 36K type complement(1106614..1107462) Hydrogenobaculum sp. Y04AAS1 6744014 YP_002121861.1 CDS HY04AAS1_1198 NC_011126.1 1107456 1108223 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: aae:aq_1787 indole-3-glycerol phosphate synthase; Indole-3-glycerol-phosphate synthase complement(1107456..1108223) Hydrogenobaculum sp. Y04AAS1 6744015 YP_002121862.1 CDS HY04AAS1_1199 NC_011126.1 1108223 1108867 R PFAM: dienelactone hydrolase; phospholipase/Carboxylesterase; BAAT/Acyl-CoA thioester hydrolase; KEGG: aae:aq_1997 hypothetical carboxymethylenebutenolidase; Carboxymethylenebutenolidase complement(1108223..1108867) Hydrogenobaculum sp. Y04AAS1 6744016 YP_002121863.1 CDS HY04AAS1_1200 NC_011126.1 1108836 1109879 R KEGG: aae:aq_334 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(1108836..1109879) Hydrogenobaculum sp. Y04AAS1 6744017 YP_002121864.1 CDS HY04AAS1_1201 NC_011126.1 1109879 1111099 R PFAM: Metal-dependent hydrolase HDOD; KEGG: sul:SYO3AOP1_1476 signal transduction protein; signal transduction protein complement(1109879..1111099) Hydrogenobaculum sp. Y04AAS1 6744018 YP_002121865.1 CDS HY04AAS1_1202 NC_011126.1 1111116 1111667 R TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: aae:aq_1851 acetolactate synthase small subunit; acetolactate synthase, small subunit complement(1111116..1111667) Hydrogenobaculum sp. Y04AAS1 6744019 YP_002121866.1 CDS HY04AAS1_1203 NC_011126.1 1111678 1113432 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: aae:aq_451 acetolactate synthase large subunit; acetolactate synthase, large subunit, biosynthetic type complement(1111678..1113432) Hydrogenobaculum sp. Y04AAS1 6744020 YP_002121867.1 CDS HY04AAS1_1204 NC_011126.1 1113485 1115059 R TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: aae:aq_356 2-isopropylmalate synthase; alpha-isopropylmalate/homocitrate synthase family transferase complement(1113485..1115059) Hydrogenobaculum sp. Y04AAS1 6744021 YP_002121868.1 CDS HY04AAS1_1205 NC_011126.1 1115104 1116159 R PFAM: creatinase; peptidase M24; KEGG: aae:aq_1535 Xaa-Pro dipeptidase; peptidase M24 complement(1115104..1116159) Hydrogenobaculum sp. Y04AAS1 6744022 YP_002121869.1 CDS HY04AAS1_1206 NC_011126.1 1116156 1117343 R PFAM: regulatory protein LacI; sigma-54 DNA-binding domain protein; KEGG: aae:aq_599 RNA polymerase sigma factor; sigma-54 DNA-binding domain-containing protein complement(1116156..1117343) Hydrogenobaculum sp. Y04AAS1 6744023 YP_002121870.1 CDS HY04AAS1_1207 NC_011126.1 1117325 1121734 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aae:aq_1565 glutamate synthase (NADPH) large chain; glutamate synthase (ferredoxin) complement(1117325..1121734) Hydrogenobaculum sp. Y04AAS1 6744024 YP_002121871.1 CDS HY04AAS1_1208 NC_011126.1 1121863 1122441 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; KEGG: aae:aq_651 hypothetical protein; Sua5/YciO/YrdC/YwlC family protein 1121863..1122441 Hydrogenobaculum sp. Y04AAS1 6744025 YP_002121872.1 CDS HY04AAS1_1209 NC_011126.1 1122448 1122825 R hypothetical protein complement(1122448..1122825) Hydrogenobaculum sp. Y04AAS1 6744026 YP_002121873.1 CDS HY04AAS1_1210 NC_011126.1 1122921 1123214 D PFAM: protein of unknown function DUF156; KEGG: amt:Amet_0044 protein of unknown function DUF156; hypothetical protein 1122921..1123214 Hydrogenobaculum sp. Y04AAS1 6744027 YP_002121874.1 CDS HY04AAS1_1211 NC_011126.1 1123216 1123551 D KEGG: gfo:GFO_1324 membrane protein containing heavy metal transport/detoxification domain; membrane protein containing heavy metal transport/detoxification domain 1123216..1123551 Hydrogenobaculum sp. Y04AAS1 6744028 YP_002121875.1 CDS HY04AAS1_1212 NC_011126.1 1123565 1123801 D PFAM: Heavy metal transport/detoxification protein; KEGG: ttj:TTHA1718 heavy metal binding protein; Heavy metal transport/detoxification protein 1123565..1123801 Hydrogenobaculum sp. Y04AAS1 6744029 YP_002121876.1 CDS HY04AAS1_1213 NC_011126.1 1123794 1125188 D TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sag:SAG2023 mercuric reductase; mercuric reductase 1123794..1125188 Hydrogenobaculum sp. Y04AAS1 6744030 YP_002121877.1 CDS HY04AAS1_1214 NC_011126.1 1125451 1128423 D TIGRFAM: valyl-tRNA synthetase; KEGG: sul:SYO3AOP1_1334 valyl-tRNA synthetase; valyl-tRNA synthetase 1125451..1128423 Hydrogenobaculum sp. Y04AAS1 6744031 YP_002121878.1 CDS HY04AAS1_1215 NC_011126.1 1128420 1128926 D PFAM: Peptidase M23; KEGG: aae:aq_652 lipoprotein; Peptidase M23 1128420..1128926 Hydrogenobaculum sp. Y04AAS1 6744032 YP_002121879.1 CDS HY04AAS1_1216 NC_011126.1 1128970 1129344 D hypothetical protein 1128970..1129344 Hydrogenobaculum sp. Y04AAS1 6744033 YP_002121880.1 CDS HY04AAS1_1217 NC_011126.1 1129378 1129596 D hypothetical protein 1129378..1129596 Hydrogenobaculum sp. Y04AAS1 6744034 YP_002121881.1 CDS HY04AAS1_1218 NC_011126.1 1129652 1130329 D KEGG: mbr:MONBRDRAFT_13061 hypothetical protein PROSITE: SER_RICH THR_RICH; hypothetical protein 1129652..1130329 Hydrogenobaculum sp. Y04AAS1 6744035 YP_002121882.1 CDS HY04AAS1_1219 NC_011126.1 1130392 1131225 D hypothetical protein 1130392..1131225 Hydrogenobaculum sp. Y04AAS1 6744036 YP_002121883.1 CDS HY04AAS1_1220 NC_011126.1 1131258 1131947 D KEGG: gme:Gmet_0839 lipoprotein; hypothetical protein 1131258..1131947 Hydrogenobaculum sp. Y04AAS1 6744037 YP_002121884.1 CDS HY04AAS1_1221 NC_011126.1 1131944 1133266 D PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: dol:Dole_2900 peptidase C14 caspase catalytic subunit P20; peptidase C14 caspase catalytic subunit p20 1131944..1133266 Hydrogenobaculum sp. Y04AAS1 6744038 YP_002121885.1 CDS HY04AAS1_1222 NC_011126.1 1133275 1134129 D hypothetical protein 1133275..1134129 Hydrogenobaculum sp. Y04AAS1 6744039 YP_002121886.1 CDS HY04AAS1_1223 NC_011126.1 1134144 1134965 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: cbf:CLI_1224 tetratricopeptide repeat family protein; hypothetical protein 1134144..1134965 Hydrogenobaculum sp. Y04AAS1 6744040 YP_002121887.1 CDS HY04AAS1_1224 NC_011126.1 1135004 1135669 R PFAM: protein of unknown function UPF0005; KEGG: cff:CFF8240_1784 hypothetical protein; hypothetical protein complement(1135004..1135669) Hydrogenobaculum sp. Y04AAS1 6744041 YP_002121888.1 CDS HY04AAS1_1225 NC_011126.1 1135766 1136866 D Dimethylates a single guanine residue of a number of tRNAs using S-adenosyl-L-methionine as a methyl group donor; N(2),N(2)-dimethylguanosine tRNA methyltransferase 1135766..1136866 Hydrogenobaculum sp. Y04AAS1 6744042 YP_002121889.1 CDS HY04AAS1_1226 NC_011126.1 1136857 1137870 D PFAM: polysaccharide deacetylase; KEGG: sul:SYO3AOP1_1756 polysaccharide deacetylase; polysaccharide deacetylase 1136857..1137870 Hydrogenobaculum sp. Y04AAS1 6744043 YP_002121890.1 CDS HY04AAS1_1227 NC_011126.1 1137956 1138915 D PFAM: ribonucleotide reductase; KEGG: hsl:OE4345R ribonucleoside-diphosphate reductase beta subunit; Ribonucleoside-diphosphate reductase 1137956..1138915 Hydrogenobaculum sp. Y04AAS1 6744044 YP_002121891.1 CDS HY04AAS1_1228 NC_011126.1 1138919 1139791 D KEGG: aae:aq_1842 protein; hypothetical protein 1138919..1139791 Hydrogenobaculum sp. Y04AAS1 6744045 YP_002121892.1 CDS ispG NC_011126.1 1139801 1140865 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1139801..1140865 Hydrogenobaculum sp. Y04AAS1 6744046 YP_002121893.1 CDS HY04AAS1_1230 NC_011126.1 1140868 1141077 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: sul:SYO3AOP1_1308 RNA chaperone Hfq; RNA chaperone Hfq 1140868..1141077 Hydrogenobaculum sp. Y04AAS1 6744047 YP_002121894.1 CDS HY04AAS1_1231 NC_011126.1 1141074 1142186 D TIGRFAM: small GTP-binding protein; GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: aae:aq_1908 GTP-binding protein HflX; GTP-binding proten HflX 1141074..1142186 Hydrogenobaculum sp. Y04AAS1 6744048 YP_002121895.1 CDS HY04AAS1_1232 NC_011126.1 1142179 1142994 D KEGG: aae:aq_1909 protein; hypothetical protein 1142179..1142994 Hydrogenobaculum sp. Y04AAS1 6744049 YP_002121896.1 CDS HY04AAS1_1233 NC_011126.1 1143002 1144027 D PFAM: aldo/keto reductase; KEGG: aae:aq_323 hypothetical protein; aldo/keto reductase 1143002..1144027 Hydrogenobaculum sp. Y04AAS1 6744050 YP_002121897.1 CDS HY04AAS1_1234 NC_011126.1 1144020 1145099 D PFAM: type II secretion system protein; KEGG: aae:aq_1285 fimbrial assembly protein PilC2; type II secretion system protein 1144020..1145099 Hydrogenobaculum sp. Y04AAS1 6744051 YP_002121898.1 CDS HY04AAS1_1235 NC_011126.1 1145145 1145954 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: aae:aq_270 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1145145..1145954 Hydrogenobaculum sp. Y04AAS1 6744052 YP_002121899.1 CDS HY04AAS1_1236 NC_011126.1 1145947 1146363 D SMART: Mov34/MPN/PAD-1 family protein; KEGG: aae:aq_1691 hypothetical protein; Mov34/MPN/PAD-1 family protein 1145947..1146363 Hydrogenobaculum sp. Y04AAS1 6744053 YP_002121900.1 CDS HY04AAS1_1237 NC_011126.1 1146353 1147210 D KEGG: aae:aq_263 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 1146353..1147210 Hydrogenobaculum sp. Y04AAS1 6744054 YP_002121901.1 CDS HY04AAS1_1238 NC_011126.1 1147226 1148269 D KEGG: aae:aq_993 hypothetical protein; hypothetical protein 1147226..1148269 Hydrogenobaculum sp. Y04AAS1 6744055 YP_002121902.1 CDS HY04AAS1_1239 NC_011126.1 1148261 1149625 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; Radical SAM domain protein; KEGG: aae:aq_2060 Mg-dependent DNase; hydrolase, TatD family complement(1148261..1149625) Hydrogenobaculum sp. Y04AAS1 6744056 YP_002121903.1 CDS HY04AAS1_1240 NC_011126.1 1149678 1151036 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1149678..1151036) Hydrogenobaculum sp. Y04AAS1 6744057 YP_002121904.1 CDS HY04AAS1_1241 NC_011126.1 1151076 1151420 R hypothetical protein complement(1151076..1151420) Hydrogenobaculum sp. Y04AAS1 6744058 YP_002121905.1 CDS HY04AAS1_1242 NC_011126.1 1151437 1152585 R KEGG: mmi:MMAR_2272 PE-PGRS family protein; hypothetical protein complement(1151437..1152585) Hydrogenobaculum sp. Y04AAS1 6744059 YP_002121906.1 CDS HY04AAS1_1243 NC_011126.1 1152606 1153382 R PFAM: Polyprenyl synthetase; KEGG: aae:aq_748 geranylgeranyl pyrophosphate synthase; Polyprenyl synthetase complement(1152606..1153382) Hydrogenobaculum sp. Y04AAS1 6744060 YP_002121907.1 CDS HY04AAS1_1244 NC_011126.1 1153379 1154311 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B complement(1153379..1154311) Hydrogenobaculum sp. Y04AAS1 6744061 YP_002121908.1 CDS HY04AAS1_1245 NC_011126.1 1154304 1154426 R hypothetical protein complement(1154304..1154426) Hydrogenobaculum sp. Y04AAS1 6744062 YP_002121909.1 CDS uvrC NC_011126.1 1154499 1156196 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1154499..1156196) Hydrogenobaculum sp. Y04AAS1 6744063 YP_002121910.1 CDS HY04AAS1_1247 NC_011126.1 1156223 1157284 R PFAM: ATP-binding region ATPase domain protein; KEGG: sul:SYO3AOP1_1478 histidine kinase; integral membrane sensor signal transduction histidine kinase complement(1156223..1157284) Hydrogenobaculum sp. Y04AAS1 6744064 YP_002121911.1 CDS HY04AAS1_1248 NC_011126.1 1157277 1157945 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sul:SYO3AOP1_1480 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1157277..1157945) Hydrogenobaculum sp. Y04AAS1 6744065 YP_002121912.1 CDS trpA NC_011126.1 1157942 1158730 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1157942..1158730) Hydrogenobaculum sp. Y04AAS1 6744066 YP_002121913.1 CDS HY04AAS1_1250 NC_011126.1 1158727 1159275 R PFAM: ribosome recycling factor; KEGG: aae:aq_712 ribosome recycling factor; ribosome recycling factor complement(1158727..1159275) Hydrogenobaculum sp. Y04AAS1 6744067 YP_002121914.1 CDS HY04AAS1_1251 NC_011126.1 1159358 1159621 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: aae:aq_108b host factor I; RNA chaperone Hfq 1159358..1159621 Hydrogenobaculum sp. Y04AAS1 6744068 YP_002121915.1 CDS HY04AAS1_1252 NC_011126.1 1159662 1160363 D KEGG: aae:aq_1248 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1159662..1160363 Hydrogenobaculum sp. Y04AAS1 6744069 YP_002121916.1 CDS HY04AAS1_1253 NC_011126.1 1160470 1161747 D PFAM: enolase; KEGG: aae:aq_484 enolase; Phosphopyruvate hydratase 1160470..1161747 Hydrogenobaculum sp. Y04AAS1 6744071 YP_002121917.1 CDS HY04AAS1_1254 NC_011126.1 1161710 1162069 D hypothetical protein 1161710..1162069 Hydrogenobaculum sp. Y04AAS1 6744072 YP_002121918.1 CDS HY04AAS1_1255 NC_011126.1 1162053 1162334 D hypothetical protein 1162053..1162334 Hydrogenobaculum sp. Y04AAS1 6744073 YP_002121919.1 CDS HY04AAS1_1256 NC_011126.1 1162356 1164548 D TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: aae:aq_1836 phosphoribosylformylglycinamidine synthase II; phosphoribosylformylglycinamidine synthase II 1162356..1164548 Hydrogenobaculum sp. Y04AAS1 6744074 YP_002121920.1 CDS HY04AAS1_1257 NC_011126.1 1164518 1165000 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: aae:aq_1837 lipoprotein signal peptidase; lipoprotein signal peptidase 1164518..1165000 Hydrogenobaculum sp. Y04AAS1 6744075 YP_002121921.1 CDS HY04AAS1_1258 NC_011126.1 1165002 1165580 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: aae:aq_2076 phosphoribosyl anthranilate isomerase; Phosphoribosylanthranilate isomerase 1165002..1165580 Hydrogenobaculum sp. Y04AAS1 6744076 YP_002121922.1 CDS HY04AAS1_1259 NC_011126.1 1165577 1166215 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: aae:aq_857 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 1165577..1166215 Hydrogenobaculum sp. Y04AAS1 6744077 YP_002121923.1 CDS HY04AAS1_1260 NC_011126.1 1166271 1167344 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1166271..1167344 Hydrogenobaculum sp. Y04AAS1 6744078 YP_002121924.1 CDS HY04AAS1_1261 NC_011126.1 1167353 1168873 D KEGG: aae:aq_243 protein; hypothetical protein 1167353..1168873 Hydrogenobaculum sp. Y04AAS1 6744079 YP_002121925.1 CDS HY04AAS1_1262 NC_011126.1 1168873 1169259 D PFAM: Thioredoxin domain; KEGG: pmi:PMT9312_0244 thioredoxin-like protein TxlA; Thioredoxin domain 1168873..1169259 Hydrogenobaculum sp. Y04AAS1 6744080 YP_002121926.1 CDS HY04AAS1_1263 NC_011126.1 1169246 1171642 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1169246..1171642) Hydrogenobaculum sp. Y04AAS1 6744081 YP_002121927.1 CDS HY04AAS1_1264 NC_011126.1 1171639 1175136 R KEGG: sul:SYO3AOP1_1462 hypothetical protein; hypothetical protein complement(1171639..1175136) Hydrogenobaculum sp. Y04AAS1 6744082 YP_002121928.1 CDS HY04AAS1_1265 NC_011126.1 1175147 1175461 R PFAM: small multidrug resistance protein; KEGG: tle:Tlet_1278 small multidrug resistance protein; small multidrug resistance protein complement(1175147..1175461) Hydrogenobaculum sp. Y04AAS1 6744083 YP_002121929.1 CDS HY04AAS1_1266 NC_011126.1 1175495 1176484 R PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: aae:aq_1888 succinyl-CoA synthetase alpha chain; CoA-binding domain-containing protein complement(1175495..1176484) Hydrogenobaculum sp. Y04AAS1 6744084 YP_002121930.1 CDS HY04AAS1_1267 NC_011126.1 1176495 1177766 R PFAM: ATP-grasp domain protein; KEGG: aae:aq_1306 succinyl-CoA synthetase beta chain; Succinate--CoA ligase complement(1176495..1177766) Hydrogenobaculum sp. Y04AAS1 6744085 YP_002121931.1 CDS HY04AAS1_1268 NC_011126.1 1177858 1178547 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: aae:aq_319 transcriptional regulator (PhoB-like); winged helix family two component transcriptional regulator 1177858..1178547 Hydrogenobaculum sp. Y04AAS1 6744086 YP_002121932.1 CDS HY04AAS1_1269 NC_011126.1 1178540 1179049 D TIGRFAM: 16S rRNA processing protein RimM; KEGG: trq:TRQ2_1231 16S rRNA processing protein RimM; 16S rRNA processing protein RimM 1178540..1179049 Hydrogenobaculum sp. Y04AAS1 6744087 YP_002121933.1 CDS HY04AAS1_1270 NC_011126.1 1179072 1180520 D TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: aae:aq_1612 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; UbiD family decarboxylase 1179072..1180520 Hydrogenobaculum sp. Y04AAS1 6744088 YP_002121934.1 CDS HY04AAS1_1271 NC_011126.1 1180581 1182398 D PFAM: flagellin domain protein; KEGG: nis:NIS_0640 flagellin; flagellin domain-containing protein 1180581..1182398 Hydrogenobaculum sp. Y04AAS1 6744089 YP_002121935.1 CDS HY04AAS1_1272 NC_011126.1 1182524 1183654 D KEGG: sul:SYO3AOP1_1316 hypothetical protein; hypothetical protein 1182524..1183654 Hydrogenobaculum sp. Y04AAS1 6744090 YP_002121936.1 CDS HY04AAS1_1273 NC_011126.1 1183631 1184521 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: aae:aq_139 riboflavin kinase / FMN adenylyltransferase; riboflavin biosynthesis protein RibF complement(1183631..1184521) Hydrogenobaculum sp. Y04AAS1 6744091 YP_002121937.1 CDS pyrH NC_011126.1 1184514 1185233 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1184514..1185233) Hydrogenobaculum sp. Y04AAS1 6744092 YP_002121938.1 CDS tsf NC_011126.1 1185230 1186051 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(1185230..1186051) Hydrogenobaculum sp. Y04AAS1 6744093 YP_002121939.1 CDS rpsB NC_011126.1 1186066 1186881 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(1186066..1186881) Hydrogenobaculum sp. Y04AAS1 6744094 YP_002121940.1 CDS HY04AAS1_1277 NC_011126.1 1187523 1187996 D KEGG: sul:SYO3AOP1_1012 fimbrial protein; hypothetical protein 1187523..1187996 Hydrogenobaculum sp. Y04AAS1 6744096 YP_002121941.1 CDS HY04AAS1_1278 NC_011126.1 1188045 1191164 D KEGG: pfa:PFL2540w hypothetical protein; hypothetical protein 1188045..1191164 Hydrogenobaculum sp. Y04AAS1 6744097 YP_002121942.1 CDS HY04AAS1_1279 NC_011126.1 1191215 1192711 R TIGRFAM: transposase, IS605 OrfB family; KEGG: sul:SYO3AOP1_0342 transposase; transposase, IS605 OrfB family complement(1191215..1192711) Hydrogenobaculum sp. Y04AAS1 6744098 YP_002121943.1 CDS HY04AAS1_1280 NC_011126.1 1192826 1193167 D KEGG: sul:SYO3AOP1_0522 hypothetical protein; hypothetical protein 1192826..1193167 Hydrogenobaculum sp. Y04AAS1 6744099 YP_002121944.1 CDS HY04AAS1_1281 NC_011126.1 1193196 1194098 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase-like protein 1193196..1194098 Hydrogenobaculum sp. Y04AAS1 6744100 YP_002121945.1 CDS HY04AAS1_1282 NC_011126.1 1194091 1195434 D KEGG: tpt:Tpet_1595 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1194091..1195434 Hydrogenobaculum sp. Y04AAS1 6744101 YP_002121946.1 CDS HY04AAS1_1283 NC_011126.1 1195419 1196066 D KEGG: trq:TRQ2_1662 6-phosphogluconolactonase; 6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase-like 1195419..1196066 Hydrogenobaculum sp. Y04AAS1 6744102 YP_002121947.1 CDS HY04AAS1_1284 NC_011126.1 1196079 1197206 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aae:aq_1896 hypothetical protein; hypothetical protein complement(1196079..1197206) Hydrogenobaculum sp. Y04AAS1 6744103 YP_002121948.1 CDS HY04AAS1_1285 NC_011126.1 1197234 1199072 R KEGG: nis:NIS_1167 hypothetical protein; signal transduction protein complement(1197234..1199072) Hydrogenobaculum sp. Y04AAS1 6744104 YP_002121949.1 CDS HY04AAS1_1286 NC_011126.1 1199100 1199474 R KEGG: aae:aq_401 hypothetical protein; hypothetical protein complement(1199100..1199474) Hydrogenobaculum sp. Y04AAS1 6744105 YP_002121950.1 CDS ispD NC_011126.1 1199557 1200195 R 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1199557..1200195) Hydrogenobaculum sp. Y04AAS1 6744106 YP_002121951.1 CDS HY04AAS1_1288 NC_011126.1 1200196 1200543 R KEGG: aae:aq_2063 protein; hypothetical protein complement(1200196..1200543) Hydrogenobaculum sp. Y04AAS1 6744107 YP_002121952.1 CDS HY04AAS1_1289 NC_011126.1 1200540 1201028 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: aae:aq_269 6-pyruvoyl tetrahydrobiopterin synthase; hypothetical protein complement(1200540..1201028) Hydrogenobaculum sp. Y04AAS1 6744108 YP_002121953.1 CDS HY04AAS1_1290 NC_011126.1 1201029 1201274 R KEGG: sul:SYO3AOP1_0947 hypothetical protein; hypothetical protein complement(1201029..1201274) Hydrogenobaculum sp. Y04AAS1 6744109 YP_002121954.1 CDS HY04AAS1_1291 NC_011126.1 1201268 1201606 R KEGG: sul:SYO3AOP1_0948 hypothetical protein; hypothetical protein complement(1201268..1201606) Hydrogenobaculum sp. Y04AAS1 6744110 YP_002121955.1 CDS HY04AAS1_1292 NC_011126.1 1201608 1201916 R KEGG: sul:SYO3AOP1_0949 hypothetical protein; hypothetical protein complement(1201608..1201916) Hydrogenobaculum sp. Y04AAS1 6744111 YP_002121956.1 CDS HY04AAS1_1293 NC_011126.1 1201913 1202155 R PFAM: SirA family protein; KEGG: sul:SYO3AOP1_0950 SirA family protein; SirA family protein complement(1201913..1202155) Hydrogenobaculum sp. Y04AAS1 6744112 YP_002121957.1 CDS HY04AAS1_1294 NC_011126.1 1202267 1203562 D KEGG: ppd:Ppro_0262 ATPase; ATPase 1202267..1203562 Hydrogenobaculum sp. Y04AAS1 6744113 YP_002121958.1 CDS HY04AAS1_1295 NC_011126.1 1203570 1204274 D KEGG: aae:aq_1010 dehydrogenase; dehydrogenase 1203570..1204274 Hydrogenobaculum sp. Y04AAS1 6744114 YP_002121959.1 CDS HY04AAS1_1296 NC_011126.1 1204264 1205043 R KEGG: aae:aq_325 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(1204264..1205043) Hydrogenobaculum sp. Y04AAS1 6744115 YP_002121960.1 CDS HY04AAS1_1297 NC_011126.1 1205052 1205180 R hypothetical protein complement(1205052..1205180) Hydrogenobaculum sp. Y04AAS1 6744116 YP_002121961.1 CDS HY04AAS1_1298 NC_011126.1 1205203 1205463 R PFAM: helix-turn-helix domain protein; KEGG: pfo:PflO1_0204 transcriptional regulator, XRE family; XRE family transcriptional regulator complement(1205203..1205463) Hydrogenobaculum sp. Y04AAS1 6744117 YP_002121962.1 CDS HY04AAS1_1299 NC_011126.1 1205474 1206661 R PFAM: HipA domain protein; KEGG: cch:Cag_1275 hypothetical protein; HipA domain-containing protein complement(1205474..1206661) Hydrogenobaculum sp. Y04AAS1 6744118 YP_002121963.1 CDS HY04AAS1_1300 NC_011126.1 1206837 1207193 D hypothetical protein 1206837..1207193 Hydrogenobaculum sp. Y04AAS1 6744119 YP_002121964.1 CDS HY04AAS1_1301 NC_011126.1 1207241 1208017 D KEGG: mxa:MXAN_1841 hypothetical protein; hypothetical protein 1207241..1208017 Hydrogenobaculum sp. Y04AAS1 6744120 YP_002121965.1 CDS HY04AAS1_1302 NC_011126.1 1208029 1208526 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sul:SYO3AOP1_0698 NADH ubiquinone oxidoreductase 20 kDa subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1208029..1208526) Hydrogenobaculum sp. Y04AAS1 6744121 YP_002121966.1 CDS HY04AAS1_1303 NC_011126.1 1208536 1209972 R PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sul:SYO3AOP1_0699 NADH dehydrogenase (ubiquinone) 30 kDa subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit complement(1208536..1209972) Hydrogenobaculum sp. Y04AAS1 6744122 YP_002121967.1 CDS HY04AAS1_1304 NC_011126.1 1209969 1211411 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sul:SYO3AOP1_0700 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(1209969..1211411) Hydrogenobaculum sp. Y04AAS1 6744123 YP_002121968.1 CDS HY04AAS1_1305 NC_011126.1 1211408 1212076 R KEGG: sul:SYO3AOP1_0701 hydrogenase 4 membrane component (E); hydrogenase 4 membrane component (E) complement(1211408..1212076) Hydrogenobaculum sp. Y04AAS1 6744124 YP_002121969.1 CDS HY04AAS1_1306 NC_011126.1 1212086 1213003 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sul:SYO3AOP1_0702 respiratory-chain NADH dehydrogenase subunit 1; respiratory-chain NADH dehydrogenase subunit 1 complement(1212086..1213003) Hydrogenobaculum sp. Y04AAS1 6744125 YP_002121970.1 CDS HY04AAS1_1307 NC_011126.1 1212996 1214897 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sul:SYO3AOP1_0703 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) complement(1212996..1214897) Hydrogenobaculum sp. Y04AAS1 6744126 YP_002121971.1 CDS HY04AAS1_1308 NC_011126.1 1215033 1218050 R KEGG: cmi:CMM_2429 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha complement(1215033..1218050) Hydrogenobaculum sp. Y04AAS1 6744127 YP_002121972.1 CDS HY04AAS1_1309 NC_011126.1 1218121 1218939 R PFAM: glycosyl transferase family 2; KEGG: sul:SYO3AOP1_0309 glycosyl transferase family 2; family 2 glycosyl transferase complement(1218121..1218939) Hydrogenobaculum sp. Y04AAS1 6744128 YP_002121973.1 CDS HY04AAS1_1310 NC_011126.1 1218936 1219481 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1218936..1219481) Hydrogenobaculum sp. Y04AAS1 6744129 YP_002121974.1 CDS HY04AAS1_1311 NC_011126.1 1219472 1221436 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: aae:aq_1765 transketolase; transketolase complement(1219472..1221436) Hydrogenobaculum sp. Y04AAS1 6744130 YP_002121975.1 CDS HY04AAS1_1312 NC_011126.1 1221614 1221820 D hypothetical protein 1221614..1221820 Hydrogenobaculum sp. Y04AAS1 6744131 YP_002121976.1 CDS HY04AAS1_1313 NC_011126.1 1222092 1222190 D hypothetical protein 1222092..1222190 Hydrogenobaculum sp. Y04AAS1 6744132 YP_002121977.1 CDS HY04AAS1_1314 NC_011126.1 1222233 1222559 D SMART: Rhodanese domain protein; KEGG: tac:Ta0643 hypothetical protein; Rhodanese domain-containing protein 1222233..1222559 Hydrogenobaculum sp. Y04AAS1 6744133 YP_002121978.1 CDS HY04AAS1_1315 NC_011126.1 1222546 1223469 R PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: sul:SYO3AOP1_1134 rubrerythrin; Rubrerythrin complement(1222546..1223469) Hydrogenobaculum sp. Y04AAS1 6744134 YP_002121979.1 CDS HY04AAS1_1316 NC_011126.1 1223481 1224317 R PFAM: Linocin_M18 bacteriocin protein; KEGG: sul:SYO3AOP1_0119 Linocin_M18 bacteriocin protein; Linocin_M18 bacteriocin protein complement(1223481..1224317) Hydrogenobaculum sp. Y04AAS1 6744135 YP_002121980.1 CDS HY04AAS1_1317 NC_011126.1 1224372 1225916 R PFAM: protein of unknown function DUF1703; KEGG: sul:SYO3AOP1_0027 protein of unknown function DUF1703; hypothetical protein complement(1224372..1225916) Hydrogenobaculum sp. Y04AAS1 6744136 YP_002121981.1 CDS HY04AAS1_1318 NC_011126.1 1226061 1226507 D hypothetical protein 1226061..1226507 Hydrogenobaculum sp. Y04AAS1 6744137 YP_002121982.1 CDS HY04AAS1_1319 NC_011126.1 1226461 1228293 D KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1226461..1228293 Hydrogenobaculum sp. Y04AAS1 6744138 YP_002121983.1 CDS HY04AAS1_1320 NC_011126.1 1228303 1229607 D KEGG: sul:SYO3AOP1_0011 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1228303..1229607 Hydrogenobaculum sp. Y04AAS1 6744139 YP_002121984.1 CDS HY04AAS1_1321 NC_011126.1 1229797 1231209 D KEGG: aae:aq_1545 protein; hypothetical protein 1229797..1231209 Hydrogenobaculum sp. Y04AAS1 6744140 YP_002121985.1 CDS HY04AAS1_1322 NC_011126.1 1231211 1231843 D PFAM: nitroreductase; KEGG: tpd:Teth39_0911 nitroreductase; nitroreductase 1231211..1231843 Hydrogenobaculum sp. Y04AAS1 6744141 YP_002121986.1 CDS HY04AAS1_1323 NC_011126.1 1231859 1233184 R KEGG: tte:TTE1100 diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(1231859..1233184) Hydrogenobaculum sp. Y04AAS1 6744142 YP_002121987.1 CDS HY04AAS1_1324 NC_011126.1 1233268 1234329 R PFAM: TQO small subunit DoxD; KEGG: bth:BT_0515 terminal quinol oxidase, subunit, (DoxD-like); TQO small subunit DoxD complement(1233268..1234329) Hydrogenobaculum sp. Y04AAS1 6744143 YP_002121988.1 CDS HY04AAS1_1325 NC_011126.1 1234479 1235015 D hypothetical protein 1234479..1235015 Hydrogenobaculum sp. Y04AAS1 6744144 YP_002121989.1 CDS HY04AAS1_1326 NC_011126.1 1235019 1236545 D PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_2 repeat protein; KEGG: aae:aq_1796 hypothetical protein; Lytic transglycosylase 1235019..1236545 Hydrogenobaculum sp. Y04AAS1 6744145 YP_002121990.1 CDS HY04AAS1_1327 NC_011126.1 1236551 1238353 R PFAM: von Willebrand factor type A; KEGG: aae:aq_345 hypothetical protein; von Willebrand factor type A complement(1236551..1238353) Hydrogenobaculum sp. Y04AAS1 6744146 YP_002121991.1 CDS HY04AAS1_1328 NC_011126.1 1238350 1238727 R hypothetical protein complement(1238350..1238727) Hydrogenobaculum sp. Y04AAS1 6744147 YP_002121992.1 CDS HY04AAS1_1329 NC_011126.1 1238798 1240219 R PFAM: chemotaxis sensory transducer; KEGG: nis:NIS_0600 hypothetical protein; methyl-accepting chemotaxis sensory transducer complement(1238798..1240219) Hydrogenobaculum sp. Y04AAS1 6744148 YP_002121993.1 CDS HY04AAS1_1330 NC_011126.1 1240241 1241371 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: aae:aq_104 hypothetical protein; geranylgeranyl reductase complement(1240241..1241371) Hydrogenobaculum sp. Y04AAS1 6744149 YP_002121994.1 CDS HY04AAS1_1331 NC_011126.1 1241371 1241658 R PFAM: ribosome-binding factor A; KEGG: lin:lin1364 ribosome-binding factor A; ribosome-binding factor A complement(1241371..1241658) Hydrogenobaculum sp. Y04AAS1 6744150 YP_002121995.1 CDS HY04AAS1_1332 NC_011126.1 1241655 1242974 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: aae:aq_164 transcriptional regulator (NtrC family); Fis family two component sigma-54 specific transcriptional regulator complement(1241655..1242974) Hydrogenobaculum sp. Y04AAS1 6744151 YP_002121996.1 CDS HY04AAS1_1333 NC_011126.1 1242971 1243204 R hypothetical protein complement(1242971..1243204) Hydrogenobaculum sp. Y04AAS1 6744152 YP_002121997.1 CDS HY04AAS1_1334 NC_011126.1 1243191 1244456 R KEGG: aae:aq_1855 DNA polymerase III gamma subunit; TIGRFAM: DNA polymerase III subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(1243191..1244456) Hydrogenobaculum sp. Y04AAS1 6744153 YP_002121998.1 CDS HY04AAS1_1335 NC_011126.1 1244516 1245367 D PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: aae:aq_038 3-hydroxyisobutyrate dehydrogenase; NAD-binding 6-phosphogluconate dehydrogenase 1244516..1245367 Hydrogenobaculum sp. Y04AAS1 6744154 YP_002121999.1 CDS HY04AAS1_1336 NC_011126.1 1245364 1247037 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: aae:aq_2155 single-strand-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 1245364..1247037 Hydrogenobaculum sp. Y04AAS1 6744155 YP_002122000.1 CDS HY04AAS1_1337 NC_011126.1 1247044 1247535 D KEGG: aae:aq_2157 protein; hypothetical protein 1247044..1247535 Hydrogenobaculum sp. Y04AAS1 6744156 YP_002122001.1 CDS HY04AAS1_1338 NC_011126.1 1247537 1248532 R PFAM: Chorismate binding-like; KEGG: aae:aq_1144 para-aminobenzoate synthetase component I; chorismate binding-like protein complement(1247537..1248532) Hydrogenobaculum sp. Y04AAS1 6744157 YP_002122002.1 CDS HY04AAS1_1339 NC_011126.1 1248508 1249233 R PFAM: aminotransferase class IV; KEGG: aae:aq_1606 aminodeoxychorismate lyase; class IV aminotransferase complement(1248508..1249233) Hydrogenobaculum sp. Y04AAS1 6744158 YP_002122003.1 CDS HY04AAS1_1340 NC_011126.1 1254425 1255630 D KEGG: aae:aq_350 GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase (dhbp synthase); TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 1254425..1255630 Hydrogenobaculum sp. Y04AAS1 6744164 YP_002122004.1 CDS HY04AAS1_1341 NC_011126.1 1255627 1256580 D PFAM: conserved hypothetical protein; KEGG: aae:aq_818 hypothetical protein; hypothetical protein 1255627..1256580 Hydrogenobaculum sp. Y04AAS1 6744165 YP_002122005.1 CDS HY04AAS1_1342 NC_011126.1 1256564 1257940 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aae:aq_819 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 1256564..1257940 Hydrogenobaculum sp. Y04AAS1 6744166 YP_002122006.1 CDS HY04AAS1_1343 NC_011126.1 1258032 1259075 D KEGG: aae:aq_737 Mrp protein; Mrp protein 1258032..1259075 Hydrogenobaculum sp. Y04AAS1 6744167 YP_002122007.1 CDS HY04AAS1_1344 NC_011126.1 1259077 1260297 D PFAM: aminotransferase class V; KEGG: aae:aq_739 FeS cluster formation protein NifS; class V aminotransferase 1259077..1260297 Hydrogenobaculum sp. Y04AAS1 6744168 YP_002122008.1 CDS HY04AAS1_1345 NC_011126.1 1260427 1261350 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aae:aq_638 transcriptional regulator (LysR family); LysR family transcriptional regulator 1260427..1261350 Hydrogenobaculum sp. Y04AAS1 6744169 YP_002122009.1 CDS HY04AAS1_1346 NC_011126.1 1261334 1262101 D PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sul:SYO3AOP1_1352 HAD-superfamily hydrolase, subfamily IA, variant 1; Haloacid dehalogenase domain-containing protein hydrolase 1261334..1262101 Hydrogenobaculum sp. Y04AAS1 6744170 YP_002122010.1 CDS HY04AAS1_1347 NC_011126.1 1262096 1262572 R PFAM: heat shock protein DnaJ domain protein; KEGG: sul:SYO3AOP1_0928 heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(1262096..1262572) Hydrogenobaculum sp. Y04AAS1 6744171 YP_002122011.1 CDS HY04AAS1_1348 NC_011126.1 1262559 1263062 R PFAM: CheW domain protein; KEGG: sul:SYO3AOP1_0927 chemotaxis protein CheW; chemotaxis protein CheW complement(1262559..1263062) Hydrogenobaculum sp. Y04AAS1 6744172 YP_002122012.1 CDS HY04AAS1_1349 NC_011126.1 1263118 1263864 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_2137 ABC transport system ATP-binding protein; ABC transporter complement(1263118..1263864) Hydrogenobaculum sp. Y04AAS1 6744173 YP_002122013.1 CDS HY04AAS1_1350 NC_011126.1 1263865 1264329 R KEGG: aae:aq_904 hypothetical protein; hypothetical protein complement(1263865..1264329) Hydrogenobaculum sp. Y04AAS1 6744174 YP_002122014.1 CDS HY04AAS1_1351 NC_011126.1 1264334 1264900 R KEGG: aae:aq_1324 protein; hypothetical protein complement(1264334..1264900) Hydrogenobaculum sp. Y04AAS1 6744175 YP_002122015.1 CDS HY04AAS1_1352 NC_011126.1 1264938 1265177 R TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: sul:SYO3AOP1_0551 cell division topological specificity factor MinE; cell division topological specificity factor MinE complement(1264938..1265177) Hydrogenobaculum sp. Y04AAS1 6744176 YP_002122016.1 CDS HY04AAS1_1353 NC_011126.1 1265180 1265974 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aae:aq_877 septum site-determining protein MinD; septum site-determining protein MinD complement(1265180..1265974) Hydrogenobaculum sp. Y04AAS1 6744177 YP_002122017.1 CDS HY04AAS1_1354 NC_011126.1 1265974 1266567 R TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: aae:aq_878 septum site-determining protein MinC; septum site-determining protein MinC complement(1265974..1266567) Hydrogenobaculum sp. Y04AAS1 6744178 YP_002122018.1 CDS HY04AAS1_1355 NC_011126.1 1266590 1267252 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aae:aq_338 ubiquinone/menaquinone biosynthesis methyltransferase; type 11 methyltransferase 1266590..1267252 Hydrogenobaculum sp. Y04AAS1 6744179 YP_002122019.1 CDS tpiA NC_011126.1 1267265 1268005 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(1267265..1268005) Hydrogenobaculum sp. Y04AAS1 6744180 YP_002122020.1 CDS HY04AAS1_1357 NC_011126.1 1268243 1270948 R KEGG: pin:Ping_0273 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(1268243..1270948) Hydrogenobaculum sp. Y04AAS1 6744181 YP_002122021.1 CDS HY04AAS1_1358 NC_011126.1 1271016 1272182 R PFAM: ATPase; KEGG: cbd:CBUD_0184 archaeal ATPase family protein; ATPase complement(1271016..1272182) Hydrogenobaculum sp. Y04AAS1 6744182 YP_002122022.1 CDS HY04AAS1_1359 NC_011126.1 1272330 1273739 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sul:SYO3AOP1_0009 peptidase U62 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 1272330..1273739 Hydrogenobaculum sp. Y04AAS1 6744183 YP_002122023.1 CDS HY04AAS1_1360 NC_011126.1 1273732 1274703 D KEGG: aae:aq_1680 protein; hypothetical protein 1273732..1274703 Hydrogenobaculum sp. Y04AAS1 6744184 YP_002122024.1 CDS HY04AAS1_1361 NC_011126.1 1274707 1276818 D KEGG: aae:aq_844 (p)ppGpp 3-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 1274707..1276818 Hydrogenobaculum sp. Y04AAS1 6744185 YP_002122025.1 CDS HY04AAS1_1362 NC_011126.1 1276815 1278155 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aae:aq_821 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 1276815..1278155 Hydrogenobaculum sp. Y04AAS1 6744186 YP_002122026.1 CDS HY04AAS1_1363 NC_011126.1 1278217 1278750 D PFAM: glycine cleavage H-protein; KEGG: aae:aq_1108 glycine cleavage system protein H; glycine cleavage H-protein 1278217..1278750 Hydrogenobaculum sp. Y04AAS1 6744187 YP_002122027.1 CDS HY04AAS1_1364 NC_011126.1 1278752 1279330 R KEGG: sul:SYO3AOP1_1534 outer membrane lipoprotein carrier protein LolA; hypothetical protein complement(1278752..1279330) Hydrogenobaculum sp. Y04AAS1 6744188 YP_002122028.1 CDS HY04AAS1_1365 NC_011126.1 1279320 1280420 R KEGG: aae:aq_1891 hypothetical protein; hypothetical protein complement(1279320..1280420) Hydrogenobaculum sp. Y04AAS1 6744189 YP_002122029.1 CDS HY04AAS1_1366 NC_011126.1 1280410 1281327 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(1280410..1281327) Hydrogenobaculum sp. Y04AAS1 6744190 YP_002122030.1 CDS HY04AAS1_1367 NC_011126.1 1281487 1282116 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aae:aq_1342 phosphoglycolate phosphatase; HAD-superfamily hydrolase complement(1281487..1282116) Hydrogenobaculum sp. Y04AAS1 6744192 YP_002122031.1 CDS HY04AAS1_1368 NC_011126.1 1282116 1282544 R PFAM: Protein of unknown function methylase KEGG: sul:SYO3AOP1_0182 protein of unknown function methylase; hypothetical protein complement(1282116..1282544) Hydrogenobaculum sp. Y04AAS1 6744193 YP_002122032.1 CDS HY04AAS1_1369 NC_011126.1 1282607 1283200 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1282607..1283200 Hydrogenobaculum sp. Y04AAS1 6744194 YP_002122033.1 CDS HY04AAS1_1370 NC_011126.1 1283178 1284407 D KEGG: aae:aq_1618 protein; hypothetical protein 1283178..1284407 Hydrogenobaculum sp. Y04AAS1 6744195 YP_002122034.1 CDS HY04AAS1_1371 NC_011126.1 1284412 1285551 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(1284412..1285551) Hydrogenobaculum sp. Y04AAS1 6744196 YP_002122035.1 CDS recA NC_011126.1 1285556 1286614 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1285556..1286614) Hydrogenobaculum sp. Y04AAS1 6744197 YP_002122036.1 CDS HY04AAS1_1373 NC_011126.1 1286622 1286906 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: aae:aq_2147a glutamyl-tRNA (Gln) amidotransferase subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C complement(1286622..1286906) Hydrogenobaculum sp. Y04AAS1 6744198 YP_002122037.1 CDS HY04AAS1_1374 NC_011126.1 1286914 1289196 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sul:SYO3AOP1_0133 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(1286914..1289196) Hydrogenobaculum sp. Y04AAS1 6744199 YP_002122038.1 CDS HY04AAS1_1375 NC_011126.1 1289223 1289357 R hypothetical protein complement(1289223..1289357) Hydrogenobaculum sp. Y04AAS1 6744200 YP_002122039.1 CDS HY04AAS1_1376 NC_011126.1 1289426 1290100 R PFAM: flagellar L-ring protein; KEGG: aae:aq_1714 flagellar L-ring protein FlgH; flagellar L-ring protein complement(1289426..1290100) Hydrogenobaculum sp. Y04AAS1 6744201 YP_002122040.1 CDS HY04AAS1_1377 NC_011126.1 1290109 1291434 R PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: aae:aq_1664 biotin carboxylase; Carbamoyl-phosphate synthase L chain ATP-binding complement(1290109..1291434) Hydrogenobaculum sp. Y04AAS1 6744202 YP_002122041.1 CDS HY04AAS1_1378 NC_011126.1 1291427 1291648 R PFAM: protein of unknown function DUF167; KEGG: ana:asl3196 hypothetical protein; hypothetical protein complement(1291427..1291648) Hydrogenobaculum sp. Y04AAS1 6744203 YP_002122042.1 CDS HY04AAS1_1379 NC_011126.1 1291648 1292421 R KEGG: aae:aq_150 citrate synthase; citrate synthase complement(1291648..1292421) Hydrogenobaculum sp. Y04AAS1 6744204 YP_002122043.1 CDS HY04AAS1_1380 NC_011126.1 1292431 1293246 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: aae:aq_1329 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD binding protein complement(1292431..1293246) Hydrogenobaculum sp. Y04AAS1 6744205 YP_002122044.1 CDS HY04AAS1_1381 NC_011126.1 1293260 1294708 R KEGG: sul:SYO3AOP1_1630 YD repeat protein; hypothetical protein complement(1293260..1294708) Hydrogenobaculum sp. Y04AAS1 6744206 YP_002122045.1 CDS HY04AAS1_1382 NC_011126.1 1294792 1295826 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: aae:aq_1724 transcriptional regulator (DegT/DnrJ/EryC1 family); DegT/DnrJ/EryC1/StrS aminotransferase 1294792..1295826 Hydrogenobaculum sp. Y04AAS1 6744207 YP_002122046.1 CDS hisH NC_011126.1 1295823 1296431 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1295823..1296431 Hydrogenobaculum sp. Y04AAS1 6744208 YP_002122047.1 CDS HY04AAS1_1384 NC_011126.1 1296444 1297118 D KEGG: aae:aq_644 protein; hypothetical protein 1296444..1297118 Hydrogenobaculum sp. Y04AAS1 6744209 YP_002122048.1 CDS HY04AAS1_1385 NC_011126.1 1297115 1298074 D PFAM: glycosyl transferase family 2; KEGG: aae:aq_1899 dolichol-phosphate mannosyltransferase; family 2 glycosyl transferase 1297115..1298074 Hydrogenobaculum sp. Y04AAS1 6744210 YP_002122049.1 CDS HY04AAS1_1386 NC_011126.1 1298064 1298933 D KEGG: aae:aq_406 hypothetical protein; hypothetical protein 1298064..1298933 Hydrogenobaculum sp. Y04AAS1 6744211 YP_002122050.1 CDS HY04AAS1_1387 NC_011126.1 1298915 1299505 R PFAM: phosphoesterase PA-phosphatase related; KEGG: cch:Cag_0607 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase complement(1298915..1299505) Hydrogenobaculum sp. Y04AAS1 6744212 YP_002122051.1 CDS HY04AAS1_1388 NC_011126.1 1299573 1302809 R PFAM: acriflavin resistance protein; KEGG: aae:aq_695 cation efflux system (AcrB/AcrD/AcrF family); acriflavin resistance protein complement(1299573..1302809) Hydrogenobaculum sp. Y04AAS1 6744213 YP_002122052.1 CDS HY04AAS1_1389 NC_011126.1 1302811 1303935 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: aae:aq_698 acriflavin resistance protein AcrE; RND family efflux transporter MFP subunit complement(1302811..1303935) Hydrogenobaculum sp. Y04AAS1 6744214 YP_002122053.1 CDS HY04AAS1_1390 NC_011126.1 1303937 1305328 R PFAM: outer membrane efflux protein; KEGG: aae:aq_699 hypothetical protein; outer membrane efflux protein complement(1303937..1305328) Hydrogenobaculum sp. Y04AAS1 6744215 YP_002122054.1 CDS HY04AAS1_1391 NC_011126.1 1305461 1306234 R PFAM: ATP-NAD/AcoX kinase; KEGG: aae:aq_909 probable inorganic polyphosphate/ATP-NAD kinase; ATP-NAD/AcoX kinase complement(1305461..1306234) Hydrogenobaculum sp. Y04AAS1 6744216 YP_002122055.1 CDS HY04AAS1_1392 NC_011126.1 1306231 1307253 R TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: aae:aq_416 hypothetical protein; radical SAM enzyme, Cfr family complement(1306231..1307253) Hydrogenobaculum sp. Y04AAS1 6744217 YP_002122056.1 CDS HY04AAS1_1393 NC_011126.1 1307250 1307912 R PFAM: glutamine amidotransferase class-I; KEGG: sul:SYO3AOP1_1249 glutamine amidotransferase class-I; glutamine amidotransferase class-I complement(1307250..1307912) Hydrogenobaculum sp. Y04AAS1 6744218 YP_002122057.1 CDS HY04AAS1_1394 NC_011126.1 1307912 1308241 R KEGG: sul:SYO3AOP1_0566 ferredoxin 2Fe-2S protein; ferredoxin 2Fe-2S protein complement(1307912..1308241) Hydrogenobaculum sp. Y04AAS1 6744219 YP_002122058.1 CDS HY04AAS1_1395 NC_011126.1 1308308 1309723 R PFAM: Carbohydrate-selective porin OprB; KEGG: sus:Acid_2724 carbohydrate-selective porin OprB; Carbohydrate-selective porin OprB complement(1308308..1309723) Hydrogenobaculum sp. Y04AAS1 6744220 YP_002122059.1 CDS HY04AAS1_1396 NC_011126.1 1309768 1310790 R PFAM: high-affinity nickel-transporter; KEGG: yen:YE0959 nickel transport protein; high-affinity nickel-transporter complement(1309768..1310790) Hydrogenobaculum sp. Y04AAS1 6744221 YP_002122060.1 CDS HY04AAS1_1397 NC_011126.1 1310857 1311276 R PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: ccv:CCV52592_1897 NikR C nickel binding domain family; CopG family transcriptional regulator complement(1310857..1311276) Hydrogenobaculum sp. Y04AAS1 6744222 YP_002122061.1 CDS HY04AAS1_1398 NC_011126.1 1311291 1311878 D PFAM: regulatory protein TetR; KEGG: aae:aq_321 hypothetical protein; TetR family transcriptional regulator 1311291..1311878 Hydrogenobaculum sp. Y04AAS1 6744223 YP_002122062.1 CDS HY04AAS1_1399 NC_011126.1 1311875 1312759 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: aae:aq_802 hydrogenase small chain; NADH ubiquinone oxidoreductase 20 kDa subunit 1311875..1312759 Hydrogenobaculum sp. Y04AAS1 6744224 YP_002122063.1 CDS HY04AAS1_1400 NC_011126.1 1312756 1314075 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: aae:aq_804 hydrogenase large chain; nickel-dependent hydrogenase large subunit 1312756..1314075 Hydrogenobaculum sp. Y04AAS1 6744225 YP_002122064.1 CDS HY04AAS1_1401 NC_011126.1 1314186 1316318 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1314186..1316318 Hydrogenobaculum sp. Y04AAS1 6744226 YP_002122065.1 CDS HY04AAS1_1402 NC_011126.1 1316403 1317107 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: pmo:Pmob_0979 anaerobic ribonucleoside-triphosphate reductase activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 1316403..1317107 Hydrogenobaculum sp. Y04AAS1 6744227 YP_002122066.1 CDS dnaK NC_011126.1 1317147 1319024 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1317147..1319024) Hydrogenobaculum sp. Y04AAS1 6744228 YP_002122067.1 CDS HY04AAS1_1404 NC_011126.1 1319199 1319297 D hypothetical protein 1319199..1319297 Hydrogenobaculum sp. Y04AAS1 6744229 YP_002122068.1 CDS HY04AAS1_1405 NC_011126.1 1319290 1322658 D KEGG: sul:SYO3AOP1_0011 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1319290..1322658 Hydrogenobaculum sp. Y04AAS1 6744230 YP_002122069.1 CDS HY04AAS1_1406 NC_011126.1 1322655 1323122 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: aae:aq_495 bacterioferritin comigratory protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(1322655..1323122) Hydrogenobaculum sp. Y04AAS1 6744231 YP_002122070.1 CDS HY04AAS1_1407 NC_011126.1 1323133 1324191 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: aae:aq_789 hypothetical protein; Radical SAM domain-containing protein complement(1323133..1324191) Hydrogenobaculum sp. Y04AAS1 6744232 YP_002122071.1 CDS HY04AAS1_1408 NC_011126.1 1324301 1324642 D hypothetical protein 1324301..1324642 Hydrogenobaculum sp. Y04AAS1 6744233 YP_002122072.1 CDS HY04AAS1_1409 NC_011126.1 1324639 1326324 R NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(1324639..1326324) Hydrogenobaculum sp. Y04AAS1 6744234 YP_002122073.1 CDS HY04AAS1_1410 NC_011126.1 1326305 1327798 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein; diguanylate cyclase complement(1326305..1327798) Hydrogenobaculum sp. Y04AAS1 6744235 YP_002122074.1 CDS HY04AAS1_1411 NC_011126.1 1327785 1328327 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: aae:aq_152 thiol disulfide interchange protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(1327785..1328327) Hydrogenobaculum sp. Y04AAS1 6744236 YP_002122075.1 CDS HY04AAS1_1412 NC_011126.1 1328324 1329568 R PFAM: cell division protein FtsA; KEGG: aae:aq_523 cell division protein FtsA; cell division protein FtsA complement(1328324..1329568) Hydrogenobaculum sp. Y04AAS1 6744237 YP_002122076.1 CDS HY04AAS1_1413 NC_011126.1 1329645 1330928 R PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: aae:aq_1812 homoserine dehydrogenase; Homoserine dehydrogenase complement(1329645..1330928) Hydrogenobaculum sp. Y04AAS1 6744238 YP_002122077.1 CDS HY04AAS1_1414 NC_011126.1 1330982 1331836 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1330982..1331836 Hydrogenobaculum sp. Y04AAS1 6744239 YP_002122078.1 CDS HY04AAS1_1415 NC_011126.1 1331821 1332819 D PFAM: PhoH family protein; KEGG: aae:aq_1351 phosphate starvation-inducible protein; PhoH family protein 1331821..1332819 Hydrogenobaculum sp. Y04AAS1 6744240 YP_002122079.1 CDS HY04AAS1_1416 NC_011126.1 1332782 1333216 D PFAM: protein of unknown function UPF0054; KEGG: aae:aq_1354 hypothetical protein; hypothetical protein 1332782..1333216 Hydrogenobaculum sp. Y04AAS1 6744241 YP_002122080.1 CDS HY04AAS1_1417 NC_011126.1 1333256 1334410 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: aae:aq_2073 hypothetical protein; cation diffusion facilitator family transporter complement(1333256..1334410) Hydrogenobaculum sp. Y04AAS1 6744242 YP_002122081.1 CDS HY04AAS1_1418 NC_011126.1 1334445 1335383 R KEGG: aae:aq_632 hypothetical protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein complement(1334445..1335383) Hydrogenobaculum sp. Y04AAS1 6744243 YP_002122082.1 CDS HY04AAS1_1419 NC_011126.1 1335434 1335712 R SMART: Cystinosin/ERS1p repeat; KEGG: sul:SYO3AOP1_0862 hypothetical protein; Cystinosin/ERS1p repeat complement(1335434..1335712) Hydrogenobaculum sp. Y04AAS1 6744244 YP_002122083.1 CDS HY04AAS1_1420 NC_011126.1 1335709 1336614 R KEGG: aae:aq_362 hypothetical protein; ADP-heptose:LPS heptosyltransferase-like protein complement(1335709..1336614) Hydrogenobaculum sp. Y04AAS1 6744245 YP_002122084.1 CDS HY04AAS1_1421 NC_011126.1 1336611 1337474 R PFAM: ROK family protein; KEGG: sfu:Sfum_1953 ROK family protein; ROK family protein complement(1336611..1337474) Hydrogenobaculum sp. Y04AAS1 6744246 YP_002122085.1 CDS HY04AAS1_1422 NC_011126.1 1337552 1338037 D KEGG: sul:SYO3AOP1_1572 hypothetical protein; hypothetical protein 1337552..1338037 Hydrogenobaculum sp. Y04AAS1 6744247 YP_002122086.1 CDS HY04AAS1_1423 NC_011126.1 1338042 1341575 R KEGG: sul:SYO3AOP1_0491 hypothetical protein; hypothetical protein complement(1338042..1341575) Hydrogenobaculum sp. Y04AAS1 6744248 YP_002122087.1 CDS HY04AAS1_1424 NC_011126.1 1341609 1341809 R hypothetical protein complement(1341609..1341809) Hydrogenobaculum sp. Y04AAS1 6744249 YP_002122088.1 CDS HY04AAS1_1425 NC_011126.1 1341806 1344961 R PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sul:SYO3AOP1_0490 helicase domain protein; helicase domain-containing protein complement(1341806..1344961) Hydrogenobaculum sp. Y04AAS1 6744250 YP_002122089.1 CDS HY04AAS1_1426 NC_011126.1 1344987 1345949 R KEGG: aae:aq_660 hydrogenase small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; Nickel-iron dehydrogenase small subunit domain protein; hydrogenase (NiFe) small subunit HydA complement(1344987..1345949) Hydrogenobaculum sp. Y04AAS1 6744251 YP_002122090.1 CDS HY04AAS1_1427 NC_011126.1 1345984 1346256 R hypothetical protein complement(1345984..1346256) Hydrogenobaculum sp. Y04AAS1 6744252 YP_002122091.1 CDS HY04AAS1_1428 NC_011126.1 1346352 1346579 D PFAM: FeoA family protein; FeoA family protein 1346352..1346579 Hydrogenobaculum sp. Y04AAS1 6744253 YP_002122092.1 CDS HY04AAS1_1429 NC_011126.1 1346603 1348696 D TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: aae:aq_1255 ferrous iron transport protein B; ferrous iron transport protein B 1346603..1348696 Hydrogenobaculum sp. Y04AAS1 6744254 YP_002122093.1 CDS HY04AAS1_1430 NC_011126.1 1349091 1349366 D hypothetical protein 1349091..1349366 Hydrogenobaculum sp. Y04AAS1 6744256 YP_002122094.1 CDS HY04AAS1_1431 NC_011126.1 1349370 1350062 D PFAM: Haem oxygenase-like; KEGG: cyt:cce_2324 heme oxygenase; Heme oxygenase 1349370..1350062 Hydrogenobaculum sp. Y04AAS1 6744257 YP_002122095.1 CDS HY04AAS1_1432 NC_011126.1 1350125 1351390 D PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: aae:aq_1512 isocitrate dehydrogenase; isocitrate/isopropylmalate dehydrogenase 1350125..1351390 Hydrogenobaculum sp. Y04AAS1 6744258 YP_002122096.1 CDS HY04AAS1_1433 NC_011126.1 1351406 1351822 D PFAM: OsmC family protein; KEGG: aae:aq_1515 hypothetical protein; OsmC family protein 1351406..1351822 Hydrogenobaculum sp. Y04AAS1 6744259 YP_002122097.1 CDS HY04AAS1_1434 NC_011126.1 1351827 1353245 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: aae:aq_1517 pyruvate carboxylase subunit A; acetyl-CoA carboxylase, biotin carboxylase 1351827..1353245 Hydrogenobaculum sp. Y04AAS1 6744260 YP_002122098.1 CDS HY04AAS1_1435 NC_011126.1 1353258 1355174 D catalyzes the formation of oxaloacetate from pyruvate; pyruvate carboxylase subunit B 1353258..1355174 Hydrogenobaculum sp. Y04AAS1 6744261 YP_002122099.1 CDS HY04AAS1_1436 NC_011126.1 1355308 1357131 D PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sul:SYO3AOP1_0618 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1355308..1357131 Hydrogenobaculum sp. Y04AAS1 6744262 YP_002122100.1 CDS HY04AAS1_1437 NC_011126.1 1357142 1358041 D TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: sul:SYO3AOP1_0617 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta 1357142..1358041 Hydrogenobaculum sp. Y04AAS1 6744263 YP_002122101.1 CDS HY04AAS1_1438 NC_011126.1 1358038 1358646 D PFAM: pentapeptide repeat protein; KEGG: sul:SYO3AOP1_0707 pentapeptide repeat protein; pentapeptide repeat-containing protein 1358038..1358646 Hydrogenobaculum sp. Y04AAS1 6744264 YP_002122102.1 CDS HY04AAS1_1439 NC_011126.1 1358646 1359209 D KEGG: bid:Bind_2816 hypothetical protein; hypothetical protein 1358646..1359209 Hydrogenobaculum sp. Y04AAS1 6744265 YP_002122103.1 CDS HY04AAS1_1440 NC_011126.1 1359234 1360964 D PFAM: PHP domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; KEGG: aae:aq_1422 hypothetical DNA polymerase / histidinol phosphatase; PHP domain-containing protein 1359234..1360964 Hydrogenobaculum sp. Y04AAS1 6744266 YP_002122104.1 CDS HY04AAS1_1441 NC_011126.1 1360945 1363410 D PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: aae:aq_411 tRNA nucleotidyltransferase (CCA-adding enzyme); Polynucleotide adenylyltransferase region 1360945..1363410 Hydrogenobaculum sp. Y04AAS1 6744267 YP_002122105.1 CDS HY04AAS1_1442 NC_011126.1 1363686 1364759 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: sus:Acid_0685 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 1363686..1364759 Hydrogenobaculum sp. Y04AAS1 6744270 YP_002122106.1 CDS HY04AAS1_1443 NC_011126.1 1364891 1366021 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sul:SYO3AOP1_1602 diguanylate cyclase/phosphodiesterase; diguanylate cyclase 1364891..1366021 Hydrogenobaculum sp. Y04AAS1 6744271 YP_002122107.1 CDS HY04AAS1_1444 NC_011126.1 1365993 1367921 D KEGG: sul:SYO3AOP1_1604 hypothetical protein; hypothetical protein 1365993..1367921 Hydrogenobaculum sp. Y04AAS1 6744272 YP_002122108.1 CDS HY04AAS1_1445 NC_011126.1 1367921 1368352 D KEGG: sul:SYO3AOP1_1603 hypothetical protein; hypothetical protein 1367921..1368352 Hydrogenobaculum sp. Y04AAS1 6744273 YP_002122109.1 CDS HY04AAS1_1446 NC_011126.1 1368388 1369689 D TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: aae:aq_597 adenylosuccinate lyase; adenylosuccinate lyase 1368388..1369689 Hydrogenobaculum sp. Y04AAS1 6744274 YP_002122110.1 CDS HY04AAS1_1447 NC_011126.1 1369686 1370267 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aae:aq_1480 CDPdiacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1369686..1370267 Hydrogenobaculum sp. Y04AAS1 6744275 YP_002122111.1 CDS HY04AAS1_1449 NC_011126.1 1371206 1371871 R TIGRFAM: glutaredoxin-like domain protein; KEGG: aae:aq_443 glutaredoxin-like protein; glutaredoxin-like domain-containing protein complement(1371206..1371871) Hydrogenobaculum sp. Y04AAS1 6744277 YP_002122112.1 CDS HY04AAS1_1450 NC_011126.1 1371934 1372338 R TIGRFAM: hemerythrin-like metal-binding protein; KEGG: sul:SYO3AOP1_1768 hemerythrin-like metal-binding protein; hemerythrin-like metal-binding protein complement(1371934..1372338) Hydrogenobaculum sp. Y04AAS1 6744278 YP_002122113.1 CDS HY04AAS1_1451 NC_011126.1 1372521 1373489 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; KEGG: aae:aq_500 thioredoxin reductase; thioredoxin reductase 1372521..1373489 Hydrogenobaculum sp. Y04AAS1 6744279 YP_002122114.1 CDS HY04AAS1_1452 NC_011126.1 1373503 1373946 D KEGG: aae:aq_250 hypothetical protein; TraR/DksA family transcriptional regulator 1373503..1373946 Hydrogenobaculum sp. Y04AAS1 6744280 YP_002122115.1 CDS HY04AAS1_1453 NC_011126.1 1373949 1375382 D KEGG: aae:aq_247 glutamyl-tRNA (Gln) amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 1373949..1375382 Hydrogenobaculum sp. Y04AAS1 6744281 YP_002122116.1 CDS HY04AAS1_1454 NC_011126.1 1375376 1375921 D KEGG: aae:aq_082 hypothetical protein; hypothetical protein 1375376..1375921 Hydrogenobaculum sp. Y04AAS1 6744282 YP_002122117.1 CDS HY04AAS1_1455 NC_011126.1 1375921 1378068 D PFAM: UvrD/REP helicase; KEGG: aae:aq_793 ATP-dependent DNA helicase REP; UvrD/REP helicase 1375921..1378068 Hydrogenobaculum sp. Y04AAS1 6744283 YP_002122118.1 CDS HY04AAS1_1456 NC_011126.1 1378065 1379282 D PFAM: TrkA-N domain protein; Ion transport protein; Ion transport 2 domain protein; KEGG: aae:aq_1863 potassium channel protein; Ion transport 2 domain-containing protein 1378065..1379282 Hydrogenobaculum sp. Y04AAS1 6744284 YP_002122119.1 CDS HY04AAS1_1457 NC_011126.1 1379295 1380263 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sul:SYO3AOP1_0164 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1379295..1380263 Hydrogenobaculum sp. Y04AAS1 6744285 YP_002122120.1 CDS HY04AAS1_1458 NC_011126.1 1380264 1380680 R PFAM: protein of unknown function DUF461; KEGG: rpa:RPA2931 DUF461; hypothetical protein complement(1380264..1380680) Hydrogenobaculum sp. Y04AAS1 6744286 YP_002122121.1 CDS HY04AAS1_1459 NC_011126.1 1380779 1381012 D hypothetical protein 1380779..1381012 Hydrogenobaculum sp. Y04AAS1 6744287 YP_002122122.1 CDS HY04AAS1_1460 NC_011126.1 1381009 1382229 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: acr:Acry_1684 major facilitator superfamily MFS_1; major facilitator superfamily protein 1381009..1382229 Hydrogenobaculum sp. Y04AAS1 6744288 YP_002122123.1 CDS HY04AAS1_1461 NC_011126.1 1382226 1383314 D PFAM: glycosyl transferase group 1; KEGG: sul:SYO3AOP1_1755 glycosyl transferase group 1; group 1 glycosyl transferase 1382226..1383314 Hydrogenobaculum sp. Y04AAS1 6744289 YP_002122124.1 CDS HY04AAS1_1462 NC_011126.1 1383444 1384235 D KEGG: aae:aq_1794 hypothetical protein; hypothetical protein 1383444..1384235 Hydrogenobaculum sp. Y04AAS1 6744291 YP_002122125.1 CDS HY04AAS1_1463 NC_011126.1 1384243 1384974 D KEGG: aae:aq_1583 protein; hypothetical protein 1384243..1384974 Hydrogenobaculum sp. Y04AAS1 6744292 YP_002122126.1 CDS HY04AAS1_1464 NC_011126.1 1384971 1385861 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: npu:Npun_F1823 tetratricopeptide TPR_2 repeat protein; hypothetical protein 1384971..1385861 Hydrogenobaculum sp. Y04AAS1 6744293 YP_002122127.1 CDS HY04AAS1_1465 NC_011126.1 1385848 1386714 D PFAM: UbiA prenyltransferase; KEGG: cdf:CD0982 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; UbiA prenyltransferase 1385848..1386714 Hydrogenobaculum sp. Y04AAS1 6744294 YP_002122128.1 CDS HY04AAS1_1466 NC_011126.1 1386711 1387502 R KEGG: aae:aq_1800 protein; hypothetical protein complement(1386711..1387502) Hydrogenobaculum sp. Y04AAS1 6744295 YP_002122129.1 CDS HY04AAS1_1467 NC_011126.1 1387511 1389250 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: aae:aq_1803 sulfur oxidation protein SoxB; 5'-Nucleotidase domain-containing protein complement(1387511..1389250) Hydrogenobaculum sp. Y04AAS1 6744296 YP_002122130.1 CDS HY04AAS1_1468 NC_011126.1 1389261 1389590 R PFAM: Sulphur oxidation protein SoxZ; KEGG: aae:aq_1809 hypothetical protein; sulfur oxidation protein SoxZ complement(1389261..1389590) Hydrogenobaculum sp. Y04AAS1 6744297 YP_002122131.1 CDS HY04AAS1_1469 NC_011126.1 1389607 1389912 R KEGG: acr:Acry_2479 hypothetical protein; hypothetical protein complement(1389607..1389912) Hydrogenobaculum sp. Y04AAS1 6744298 YP_002122132.1 CDS HY04AAS1_1470 NC_011126.1 1389905 1390393 R KEGG: aae:aq_1810 hypothetical protein; hypothetical protein complement(1389905..1390393) Hydrogenobaculum sp. Y04AAS1 6744299 YP_002122133.1 CDS HY04AAS1_1471 NC_011126.1 1390387 1390800 R KEGG: aae:aq_1811 thioredoxin; thioredoxin complement(1390387..1390800) Hydrogenobaculum sp. Y04AAS1 6744300 YP_002122134.1 CDS HY04AAS1_1472 NC_011126.1 1390797 1391252 R PFAM: Domain of unknown function DUF1791; KEGG: sul:SYO3AOP1_0504 domain of unknown function DUF1791; hypothetical protein complement(1390797..1391252) Hydrogenobaculum sp. Y04AAS1 6744301 YP_002122135.1 CDS HY04AAS1_1473 NC_011126.1 1391305 1392789 R KEGG: aae:aq_1862 hypothetical protein; hypothetical protein complement(1391305..1392789) Hydrogenobaculum sp. Y04AAS1 6744302 YP_002122136.1 CDS HY04AAS1_1474 NC_011126.1 1392963 1393523 D KEGG: sfu:Sfum_1840 hypothetical protein; hypothetical protein 1392963..1393523 Hydrogenobaculum sp. Y04AAS1 6744303 YP_002122137.1 CDS HY04AAS1_1475 NC_011126.1 1393560 1394150 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: aae:aq_549 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 1393560..1394150 Hydrogenobaculum sp. Y04AAS1 6744304 YP_002122138.1 CDS HY04AAS1_1476 NC_011126.1 1394171 1394353 D hypothetical protein 1394171..1394353 Hydrogenobaculum sp. Y04AAS1 6744305 YP_002122139.1 CDS HY04AAS1_1477 NC_011126.1 1394359 1395147 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aoe:Clos_2585 ABC transporter; ABC transporter 1394359..1395147 Hydrogenobaculum sp. Y04AAS1 6744306 YP_002122140.1 CDS HY04AAS1_1478 NC_011126.1 1395148 1395912 D PFAM: ABC transporter; KEGG: cte:CT0183 ABC-type drug export system, membrane protein; ABC transporter 1395148..1395912 Hydrogenobaculum sp. Y04AAS1 6744307 YP_002122141.1 CDS HY04AAS1_1479 NC_011126.1 1396053 1396355 R hypothetical protein complement(1396053..1396355) Hydrogenobaculum sp. Y04AAS1 6744309 YP_002122142.1 CDS HY04AAS1_1480 NC_011126.1 1396465 1396962 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aae:aq_067 dimethylsulfoxide reductase chain B; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1396465..1396962 Hydrogenobaculum sp. Y04AAS1 6744310 YP_002122143.1 CDS HY04AAS1_1481 NC_011126.1 1396928 1398319 D TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aae:aq_1747 UDP-MurNac-tripeptide synthetase; UDP-N-acetylmuramyl-tripeptide synthetase 1396928..1398319 Hydrogenobaculum sp. Y04AAS1 6744311 YP_002122144.1 CDS HY04AAS1_1482 NC_011126.1 1398346 1398981 D KEGG: aae:aq_496 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 1398346..1398981 Hydrogenobaculum sp. Y04AAS1 6744312 YP_002122145.1 CDS HY04AAS1_1483 NC_011126.1 1398978 1399280 D hypothetical protein 1398978..1399280 Hydrogenobaculum sp. Y04AAS1 6744313 YP_002122146.1 CDS HY04AAS1_1484 NC_011126.1 1399280 1401328 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: aae:aq_1212 flagellar export protein; flagellar biosynthesis protein FlhA 1399280..1401328 Hydrogenobaculum sp. Y04AAS1 6744314 YP_002122147.1 CDS HY04AAS1_1485 NC_011126.1 1401318 1402439 D PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: aae:aq_1214 flagellar biosynthesis FlhF; GTP-binding signal recognition particle SRP54 G- domain 1401318..1402439 Hydrogenobaculum sp. Y04AAS1 6744315 YP_002122148.1 CDS HY04AAS1_1486 NC_011126.1 1402436 1403272 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aae:aq_1217 septum site-determining protein MinD; Cobyrinic acid ac-diamide synthase 1402436..1403272 Hydrogenobaculum sp. Y04AAS1 6744316 YP_002122149.1 CDS HY04AAS1_1487 NC_011126.1 1403269 1404006 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: aae:aq_1693 N-terminus of phage SPO1 DNA polymerase; phage SPO1 DNA polymerase-like protein 1403269..1404006 Hydrogenobaculum sp. Y04AAS1 6744317 YP_002122150.1 CDS HY04AAS1_1488 NC_011126.1 1404009 1404518 R PFAM: PEBP family protein; KEGG: aae:aq_1250 hypothetical protein; PEBP family protein complement(1404009..1404518) Hydrogenobaculum sp. Y04AAS1 6744318 YP_002122151.1 CDS HY04AAS1_1489 NC_011126.1 1404522 1406963 R PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: aae:aq_1296 ATP-dependent Clp protease; ATPase AAA-2 domain-containing protein complement(1404522..1406963) Hydrogenobaculum sp. Y04AAS1 6744319 YP_002122152.1 CDS HY04AAS1_1490 NC_011126.1 1407051 1408964 R PFAM: transglutaminase domain protein; KEGG: sul:SYO3AOP1_1521 transglutaminase domain protein; transglutaminase domain-containing protein complement(1407051..1408964) Hydrogenobaculum sp. Y04AAS1 6744320 YP_002122153.1 CDS HY04AAS1_1491 NC_011126.1 1409053 1410660 R PFAM: ResB family protein; KEGG: aae:aq_2082 cytochrome c biogenesis protein; ResB family protein complement(1409053..1410660) Hydrogenobaculum sp. Y04AAS1 6744322 YP_002122154.1 CDS HY04AAS1_1492 NC_011126.1 1410657 1410917 R hypothetical protein complement(1410657..1410917) Hydrogenobaculum sp. Y04AAS1 6744323 YP_002122155.1 CDS HY04AAS1_1493 NC_011126.1 1410914 1411429 R KEGG: aae:aq_579 polypeptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(1410914..1411429) Hydrogenobaculum sp. Y04AAS1 6744324 YP_002122156.1 CDS HY04AAS1_1494 NC_011126.1 1411508 1412359 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: aae:aq_731 cytochrome c-type biogenesis protein; cytochrome c biogenesis protein transmembrane region complement(1411508..1412359) Hydrogenobaculum sp. Y04AAS1 6744325 YP_002122157.1 CDS HY04AAS1_1495 NC_011126.1 1412372 1413865 R TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: sul:SYO3AOP1_0967 integral membrane protein MviN; integral membrane protein MviN complement(1412372..1413865) Hydrogenobaculum sp. Y04AAS1 6744326 YP_002122158.1 CDS HY04AAS1_1496 NC_011126.1 1413862 1414491 R PFAM: Endonuclease V; KEGG: aae:aq_548 hypothetical endonuclease V (deoxyinosine 3'endonuclease); Deoxyribonuclease V complement(1413862..1414491) Hydrogenobaculum sp. Y04AAS1 6744327 YP_002122159.1 CDS HY04AAS1_1497 NC_011126.1 1414551 1415147 R PFAM: AMMECR1 domain protein; KEGG: aae:aq_1444 hypothetical protein; AMMECR1 domain-containing protein complement(1414551..1415147) Hydrogenobaculum sp. Y04AAS1 6744328 YP_002122160.1 CDS HY04AAS1_1499 NC_011126.1 1415341 1416465 D PFAM: filamentation induced by cAMP protein Fic; KEGG: dar:Daro_3955 filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic 1415341..1416465 Hydrogenobaculum sp. Y04AAS1 6744330 YP_002122161.1 CDS HY04AAS1_1500 NC_011126.1 1416462 1416647 D hypothetical protein 1416462..1416647 Hydrogenobaculum sp. Y04AAS1 6744331 YP_002122162.1 CDS HY04AAS1_1501 NC_011126.1 1416899 1417084 D KEGG: cbf:CLI_1132 hypothetical protein; hypothetical protein 1416899..1417084 Hydrogenobaculum sp. Y04AAS1 6744332 YP_002122163.1 CDS HY04AAS1_1502 NC_011126.1 1417123 1419390 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1417123..1419390 Hydrogenobaculum sp. Y04AAS1 6744333 YP_002122164.1 CDS hemH NC_011126.1 1419401 1420339 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1419401..1420339 Hydrogenobaculum sp. Y04AAS1 6744334 YP_002122165.1 CDS HY04AAS1_1504 NC_011126.1 1420291 1420815 R PFAM: phosphoesterase PA-phosphatase related; KEGG: aae:aq_1706 hypothetical protein; PA-phosphatase-like phosphoesterase complement(1420291..1420815) Hydrogenobaculum sp. Y04AAS1 6744335 YP_002122166.1 CDS HY04AAS1_1505 NC_011126.1 1420818 1421726 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: aae:aq_2131 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1420818..1421726) Hydrogenobaculum sp. Y04AAS1 6744336 YP_002122167.1 CDS HY04AAS1_1506 NC_011126.1 1421723 1422286 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: aae:aq_528 phenylacrylic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1421723..1422286) Hydrogenobaculum sp. Y04AAS1 6744337 YP_002122168.1 CDS HY04AAS1_1507 NC_011126.1 1422283 1422912 R KEGG: csc:Csac_1889 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(1422283..1422912) Hydrogenobaculum sp. Y04AAS1 6744338 YP_002122169.1 CDS HY04AAS1_1508 NC_011126.1 1422974 1423195 R hypothetical protein complement(1422974..1423195) Hydrogenobaculum sp. Y04AAS1 6744339 YP_002122170.1 CDS HY04AAS1_1509 NC_011126.1 1423206 1423394 R SMART: zinc finger CDGSH-type domain protein; KEGG: mse:Msed_0266 zinc finger, CDGSH-type domain protein; zinc finger CDGSH-type domain-containing protein complement(1423206..1423394) Hydrogenobaculum sp. Y04AAS1 6744340 YP_002122171.1 CDS HY04AAS1_1510 NC_011126.1 1423510 1424712 R PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: aae:aq_728 ornithine decarboxylase; Ornithine decarboxylase complement(1423510..1424712) Hydrogenobaculum sp. Y04AAS1 6744341 YP_002122172.1 CDS HY04AAS1_1511 NC_011126.1 1424743 1425936 R KEGG: aae:aq_682 arsenite-transporting ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(1424743..1425936) Hydrogenobaculum sp. Y04AAS1 6744342 YP_002122173.1 CDS HY04AAS1_1512 NC_011126.1 1425975 1426640 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aae:aq_1977 enolase-phosphatase E-1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase complement(1425975..1426640) Hydrogenobaculum sp. Y04AAS1 6744343 YP_002122174.1 CDS HY04AAS1_1513 NC_011126.1 1426637 1427188 R PFAM: Acireductone dioxygenase ARD; KEGG: aae:aq_1975 hypothetical protein; Acireductone dioxygenase ARD complement(1426637..1427188) Hydrogenobaculum sp. Y04AAS1 6744344 YP_002122175.1 CDS HY04AAS1_1514 NC_011126.1 1427185 1427796 R TIGRFAM: methylthioribulose-1-phosphate dehydratase; PFAM: class II aldolase/adducin family protein; KEGG: aae:aq_1979 hypothetical protein; methylthioribulose-1-phosphate dehydratase complement(1427185..1427796) Hydrogenobaculum sp. Y04AAS1 6744345 YP_002122176.1 CDS HY04AAS1_1515 NC_011126.1 1427905 1428144 D KEGG: tet:TTHERM_00163900 Bifunctional endo-1,4-beta-xylanase xylA precursor, PROSITE: ASN_RICH GLN_RICH; bifunctional endo-1,4-beta-xylanase xylA 1427905..1428144 Hydrogenobaculum sp. Y04AAS1 6744346 YP_002122177.1 CDS HY04AAS1_1516 NC_011126.1 1428151 1429386 D TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aae:aq_2075 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoylalanine/D-glutamate ligase 1428151..1429386 Hydrogenobaculum sp. Y04AAS1 6744347 YP_002122178.1 CDS HY04AAS1_1517 NC_011126.1 1429390 1430571 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sul:SYO3AOP1_1529 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1429390..1430571) Hydrogenobaculum sp. Y04AAS1 6744348 YP_002122179.1 CDS HY04AAS1_1518 NC_011126.1 1430608 1432128 D PFAM: glycosyl transferase family 39; KEGG: aae:aq_765 hypothetical protein; glycosyl transferase family 39 1430608..1432128 Hydrogenobaculum sp. Y04AAS1 6744349 YP_002122180.1 CDS HY04AAS1_1519 NC_011126.1 1432130 1434778 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aae:aq_050 hypothetical protein; surface antigen (D15) complement(1432130..1434778) Hydrogenobaculum sp. Y04AAS1 6744350 YP_002122181.1 CDS HY04AAS1_1520 NC_011126.1 1434800 1435726 R KEGG: aae:aq_1758 hypothetical protein; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(1434800..1435726) Hydrogenobaculum sp. Y04AAS1 6744351 YP_002122182.1 CDS HY04AAS1_1521 NC_011126.1 1435701 1435868 R hypothetical protein complement(1435701..1435868) Hydrogenobaculum sp. Y04AAS1 6744352 YP_002122183.1 CDS HY04AAS1_1522 NC_011126.1 1435865 1436116 R KEGG: sul:SYO3AOP1_1735 hypothetical protein; hypothetical protein complement(1435865..1436116) Hydrogenobaculum sp. Y04AAS1 6744353 YP_002122184.1 CDS HY04AAS1_1523 NC_011126.1 1436113 1436856 R KEGG: tte:TTE2487 phosphoglycerate mutase 1; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 1 family complement(1436113..1436856) Hydrogenobaculum sp. Y04AAS1 6744354 YP_002122185.1 CDS HY04AAS1_1524 NC_011126.1 1436876 1437445 R PFAM: SirA family protein; KEGG: sul:SYO3AOP1_1311 SirA family protein; SirA family protein complement(1436876..1437445) Hydrogenobaculum sp. Y04AAS1 6744355 YP_002122186.1 CDS HY04AAS1_1525 NC_011126.1 1437508 1438629 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: aae:aq_815 pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(1437508..1438629) Hydrogenobaculum sp. Y04AAS1 6744356 YP_002122187.1 CDS HY04AAS1_1526 NC_011126.1 1438651 1440324 R TIGRFAM: transposase, IS605 OrfB family; KEGG: sul:SYO3AOP1_1718 transposase, IS605 OrfB family; transposase, IS605 OrfB family complement(1438651..1440324) Hydrogenobaculum sp. Y04AAS1 6744357 YP_002122188.1 CDS HY04AAS1_1527 NC_011126.1 1440455 1441903 R PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: aae:aq_1474 general secretion pathway protein E; type II secretion system protein E complement(1440455..1441903) Hydrogenobaculum sp. Y04AAS1 6744358 YP_002122189.1 CDS HY04AAS1_1528 NC_011126.1 1441905 1442195 R PFAM: ferredoxin; KEGG: aae:aq_919a ferredoxin; ferredoxin complement(1441905..1442195) Hydrogenobaculum sp. Y04AAS1 6744359 YP_002122190.1 CDS HY04AAS1_1529 NC_011126.1 1442210 1443055 R PFAM: peptidase M48 Ste24p; KEGG: aae:aq_1991 probable protease htpX homolog; peptidase M48 Ste24p complement(1442210..1443055) Hydrogenobaculum sp. Y04AAS1 6744360 YP_002122191.1 CDS HY04AAS1_1530 NC_011126.1 1443052 1444788 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: aae:aq_1490 RNA polymerase sigma factor; RpoD family RNA polymerase sigma-70 subunit complement(1443052..1444788) Hydrogenobaculum sp. Y04AAS1 6744361 YP_002122192.1 CDS HY04AAS1_1531 NC_011126.1 1444832 1446439 R KEGG: aae:aq_1493 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(1444832..1446439) Hydrogenobaculum sp. Y04AAS1 6744362 YP_002122193.1 CDS HY04AAS1_1532 NC_011126.1 1446485 1449253 R PFAM: ATPase associated with various cellular activities AAA_5; KEGG: aae:aq_2011 hypothetical protein; ATPase complement(1446485..1449253) Hydrogenobaculum sp. Y04AAS1 6744363 YP_002122194.1 CDS HY04AAS1_1533 NC_011126.1 1449410 1449961 D TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: aae:aq_045 Rieske-I iron sulfur protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit 1449410..1449961 Hydrogenobaculum sp. Y04AAS1 6744364 YP_002122195.1 CDS HY04AAS1_1534 NC_011126.1 1449980 1451182 D PFAM: cytochrome b/b6 domain; KEGG: aae:aq_044 ubiquinol-cytochrome c reductase cytochrome b subunit; cytochrome b/b6 domain 1449980..1451182 Hydrogenobaculum sp. Y04AAS1 6744365 YP_002122196.1 CDS HY04AAS1_1535 NC_011126.1 1451179 1451889 D KEGG: aae:aq_042 ubiquinol-cytochrome c reductase cytochrome c1 subunit; ubiquinol-cytochrome c reductase cytochrome c1 subunit 1451179..1451889 Hydrogenobaculum sp. Y04AAS1 6744366 YP_002122197.1 CDS alaS NC_011126.1 1451996 1454566 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1451996..1454566) Hydrogenobaculum sp. Y04AAS1 6744367 YP_002122198.1 CDS HY04AAS1_1537 NC_011126.1 1454598 1455425 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: sul:SYO3AOP1_1531 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(1454598..1455425) Hydrogenobaculum sp. Y04AAS1 6744368 YP_002122199.1 CDS HY04AAS1_1538 NC_011126.1 1455422 1456432 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sul:SYO3AOP1_1390 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(1455422..1456432) Hydrogenobaculum sp. Y04AAS1 6744369 YP_002122200.1 CDS HY04AAS1_1539 NC_011126.1 1456436 1457008 R KEGG: sul:SYO3AOP1_1389 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1456436..1457008) Hydrogenobaculum sp. Y04AAS1 6744370 YP_002122201.1 CDS HY04AAS1_1540 NC_011126.1 1456998 1457882 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sul:SYO3AOP1_1388 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(1456998..1457882) Hydrogenobaculum sp. Y04AAS1 6744371 YP_002122202.1 CDS HY04AAS1_1541 NC_011126.1 1457914 1458591 D PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_2160 peptide transport system ATP-binding protein; ABC transporter 1457914..1458591 Hydrogenobaculum sp. Y04AAS1 6744372 YP_002122203.1 CDS HY04AAS1_1543 NC_011126.1 1459436 1460407 D KEGG: sul:SYO3AOP1_1000 hypothetical protein; hypothetical protein 1459436..1460407 Hydrogenobaculum sp. Y04AAS1 6744374 YP_002122204.1 CDS HY04AAS1_1544 NC_011126.1 1460494 1461354 D KEGG: cch:Cag_0368 hypothetical protein; hypothetical protein 1460494..1461354 Hydrogenobaculum sp. Y04AAS1 6744375 YP_002122205.1 CDS HY04AAS1_1545 NC_011126.1 1461877 1462077 D KEGG: cyt:cce_4067 hypothetical protein; hypothetical protein 1461877..1462077 Hydrogenobaculum sp. Y04AAS1 6744376 YP_002122206.1 CDS HY04AAS1_1546 NC_011126.1 1462109 1462360 D TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; Addiction module toxin Txe/YoeB; KEGG: syp:SYNPCC7002_A0836 addiction module toxin, Txe/YoeB family; Txe/YoeB family addiction module toxin 1462109..1462360 Hydrogenobaculum sp. Y04AAS1 6744377 YP_002122207.1 CDS HY04AAS1_1547 NC_011126.1 1462531 1462806 D KEGG: sul:SYO3AOP1_1000 hypothetical protein; hypothetical protein 1462531..1462806 Hydrogenobaculum sp. Y04AAS1 6744378 YP_002122208.1 CDS HY04AAS1_1548 NC_011126.1 1462910 1464445 R PFAM: protein of unknown function DUF1703; KEGG: sul:SYO3AOP1_0027 protein of unknown function DUF1703; hypothetical protein complement(1462910..1464445) Hydrogenobaculum sp. Y04AAS1 6744379 YP_002122209.1 CDS HY04AAS1_1549 NC_011126.1 1464543 1466546 D PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; KEGG: aae:aq_1638 lipoate-protein ligase A; CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit 1464543..1466546 Hydrogenobaculum sp. Y04AAS1 6744380 YP_002122210.1 CDS HY04AAS1_1550 NC_011126.1 1466547 1467275 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: cac:CAC2328 polysaccharide ABC transporter, ATPase component; ABC transporter complement(1466547..1467275) Hydrogenobaculum sp. Y04AAS1 6744381 YP_002122211.1 CDS HY04AAS1_1551 NC_011126.1 1467272 1468069 R PFAM: ABC transporter; KEGG: mxa:MXAN_4623 O-antigen ABC exporter, permease protein; ABC transporter complement(1467272..1468069) Hydrogenobaculum sp. Y04AAS1 6744382 YP_002122212.1 CDS HY04AAS1_1552 NC_011126.1 1468139 1469314 R PFAM: iron-containing alcohol dehydrogenase; KEGG: aae:aq_1145 1,3 propanediol dehydrogenase; iron-containing alcohol dehydrogenase complement(1468139..1469314) Hydrogenobaculum sp. Y04AAS1 6744383 YP_002122213.1 CDS HY04AAS1_1553 NC_011126.1 1469325 1470074 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sul:SYO3AOP1_1239 oxidoreductase FAD/NAD(P)-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1469325..1470074) Hydrogenobaculum sp. Y04AAS1 6744384 YP_002122214.1 CDS HY04AAS1_1554 NC_011126.1 1470134 1470586 D KEGG: sul:SYO3AOP1_0242 hypothetical protein; hypothetical protein 1470134..1470586 Hydrogenobaculum sp. Y04AAS1 6744385 YP_002122215.1 CDS HY04AAS1_1555 NC_011126.1 1470588 1471262 D PFAM: alanine racemase domain protein; KEGG: aae:aq_274 hypothetical protein; alanine racemase domain-containing protein 1470588..1471262 Hydrogenobaculum sp. Y04AAS1 6744386 YP_002122216.1 CDS HY04AAS1_1556 NC_011126.1 1471262 1472182 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: aae:aq_1887 cell cycle protein MesJ; tRNA(Ile)-lysidine synthetase 1471262..1472182 Hydrogenobaculum sp. Y04AAS1 6744387 YP_002122217.1 CDS HY04AAS1_1557 NC_011126.1 1472213 1473091 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1472213..1473091 Hydrogenobaculum sp. Y04AAS1 6744388 YP_002122218.1 CDS HY04AAS1_1558 NC_011126.1 1473142 1473561 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: aae:aq_2181 molybdopterin converting factor subunit 2; molybdopterin biosynthesis MoaE protein 1473142..1473561 Hydrogenobaculum sp. Y04AAS1 6744389 YP_002122219.1 CDS HY04AAS1_1559 NC_011126.1 1473530 1474513 D PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sul:SYO3AOP1_0369 molybdenum cofactor biosynthesis protein A; Radical SAM domain-containing protein 1473530..1474513 Hydrogenobaculum sp. Y04AAS1 6744390 YP_002122220.1 CDS HY04AAS1_1560 NC_011126.1 1474526 1475761 D KEGG: aae:aq_474 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein 1474526..1475761 Hydrogenobaculum sp. Y04AAS1 6744391 YP_002122221.1 CDS HY04AAS1_1561 NC_011126.1 1475758 1476045 D hypothetical protein 1475758..1476045 Hydrogenobaculum sp. Y04AAS1 6744392 YP_002122222.1 CDS HY04AAS1_1562 NC_011126.1 1476047 1476685 R KEGG: sul:SYO3AOP1_0813 hypothetical protein; hypothetical protein complement(1476047..1476685) Hydrogenobaculum sp. Y04AAS1 6744393 YP_002122223.1 CDS pyrG NC_011126.1 1476735 1478339 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1476735..1478339 Hydrogenobaculum sp. Y04AAS1 6744394 YP_002122224.1 CDS HY04AAS1_1564 NC_011126.1 1478343 1479104 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: aae:aq_2051 flagellar hook basal-body protein FlgG; flagellar basal body rod protein 1478343..1479104 Hydrogenobaculum sp. Y04AAS1 6744395 YP_002122225.1 CDS HY04AAS1_1565 NC_011126.1 1479108 1479977 R KEGG: aae:aq_539 protein; hypothetical protein complement(1479108..1479977) Hydrogenobaculum sp. Y04AAS1 6744396 YP_002122226.1 CDS thiE NC_011126.1 1480038 1480682 D Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 1480038..1480682 Hydrogenobaculum sp. Y04AAS1 6744397 YP_002122227.1 CDS HY04AAS1_1567 NC_011126.1 1480679 1481542 D KEGG: sul:SYO3AOP1_0477 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 1480679..1481542 Hydrogenobaculum sp. Y04AAS1 6744398 YP_002122228.1 CDS HY04AAS1_1568 NC_011126.1 1481544 1483820 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: aae:aq_1445 cation transporting ATPase (E1-E2 family); heavy metal translocating P-type ATPase complement(1481544..1483820) Hydrogenobaculum sp. Y04AAS1 6744399 YP_002122229.1 CDS HY04AAS1_1569 NC_011126.1 1483879 1484556 R PFAM: ABC transporter; SMART: AAA ATPase; KEGG: aae:aq_2160 peptide transport system ATP-binding protein; ABC transporter complement(1483879..1484556) Hydrogenobaculum sp. Y04AAS1 6744400 YP_002122230.1 CDS HY04AAS1_1570 NC_011126.1 1484588 1485472 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sul:SYO3AOP1_1388 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1484588..1485472 Hydrogenobaculum sp. Y04AAS1 6744401 YP_002122231.1 CDS HY04AAS1_1571 NC_011126.1 1485462 1486034 D KEGG: sul:SYO3AOP1_1389 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1485462..1486034 Hydrogenobaculum sp. Y04AAS1 6744402 YP_002122232.1 CDS HY04AAS1_1572 NC_011126.1 1486038 1487030 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sul:SYO3AOP1_1390 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 1486038..1487030 Hydrogenobaculum sp. Y04AAS1 6744403 YP_002122233.1 CDS HY04AAS1_1573 NC_011126.1 1487052 1488800 D in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis; bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein 1487052..1488800 Hydrogenobaculum sp. Y04AAS1 6744404 YP_002122234.1 CDS HY04AAS1_1575 NC_011126.1 1489061 1491301 D PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: glo:Glov_1528 hypothetical protein; type 12 methyltransferase 1489061..1491301 Hydrogenobaculum sp. Y04AAS1 6744406 YP_002122235.1 CDS HY04AAS1_1576 NC_011126.1 1491306 1493546 D PFAM: glycosyl transferase family 2; KEGG: cbk:CLL_A3246 WsaE; family 2 glycosyl transferase 1491306..1493546 Hydrogenobaculum sp. Y04AAS1 6744407 YP_002122236.1 CDS HY04AAS1_1577 NC_011126.1 1493550 1494497 D PFAM: glycosyl transferase family 2; KEGG: pcu:pc0904 probable rhamnosyltransferase; family 2 glycosyl transferase 1493550..1494497 Hydrogenobaculum sp. Y04AAS1 6744408 YP_002122237.1 CDS HY04AAS1_1578 NC_011126.1 1494494 1495411 D PFAM: glycosyl transferase family 2; KEGG: apa:APP7_1479 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 1494494..1495411 Hydrogenobaculum sp. Y04AAS1 6744409 YP_002122238.1 CDS HY04AAS1_1579 NC_011126.1 1495504 1495980 R TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; KEGG: aae:aq_185 glycerol-3-phosphate cytidyltransferase; rfaE bifunctional protein complement(1495504..1495980) Hydrogenobaculum sp. Y04AAS1 6744411 YP_002122239.1 CDS HY04AAS1_1580 NC_011126.1 1496096 1497625 D PFAM: protein of unknown function DUF1703; KEGG: sul:SYO3AOP1_0027 protein of unknown function DUF1703; hypothetical protein 1496096..1497625 Hydrogenobaculum sp. Y04AAS1 6744412 YP_002122240.1 CDS HY04AAS1_1581 NC_011126.1 1498104 1499183 D KEGG: bpl:BURPS1106A_A1951 membrane-anchored cell surface protein; hypothetical protein 1498104..1499183 Hydrogenobaculum sp. Y04AAS1 6744413 YP_002122241.1 CDS HY04AAS1_1582 NC_011126.1 1499253 1500272 R PFAM: phosphoesterase RecJ domain protein; KEGG: aae:aq_1630 hypothetical protein; phosphoesterase RecJ domain-containing protein complement(1499253..1500272) Hydrogenobaculum sp. Y04AAS1 6744414 YP_002122242.1 CDS HY04AAS1_1583 NC_011126.1 1500292 1502709 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(1500292..1502709) Hydrogenobaculum sp. Y04AAS1 6744415 YP_002122243.1 CDS HY04AAS1_1584 NC_011126.1 1502726 1504159 R PFAM: molydopterin dinucleotide-binding region; KEGG: aae:aq_116 hypothetical protein; molydopterin dinucleotide-binding region complement(1502726..1504159) Hydrogenobaculum sp. Y04AAS1 6744416 YP_002122244.1 CDS HY04AAS1_1585 NC_011126.1 1504168 1504950 R KEGG: aae:aq_1552 enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-(acyl-carrier-protein) reductase (NADH) complement(1504168..1504950) Hydrogenobaculum sp. Y04AAS1 6744417 YP_002122245.1 CDS HY04AAS1_1586 NC_011126.1 1504968 1505771 R catalyzes the reversible formation of fructose 1,6-bisphosphate from glycerone phosphate and D-glyceraldehyde 3-phosphate; fructose-bisphosphate aldolase complement(1504968..1505771) Hydrogenobaculum sp. Y04AAS1 6744418 YP_002122246.1 CDS HY04AAS1_1587 NC_011126.1 1505773 1507773 R KEGG: aae:aq_2141 glycyl-tRNA synthetase beta chain; TIGRFAM: glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase beta subunit; glycyl-tRNA synthetase subunit beta complement(1505773..1507773) Hydrogenobaculum sp. Y04AAS1 6744419 YP_002122247.1 CDS glyQ NC_011126.1 1507770 1508618 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(1507770..1508618) Hydrogenobaculum sp. Y04AAS1 6744420 YP_002122248.1 CDS HY04AAS1_1589 NC_011126.1 1508676 1508966 D PFAM: DNA polymerase subunit beta; KEGG: aae:aq_507 hypothetical protein; DNA polymerase subunit beta 1508676..1508966 Hydrogenobaculum sp. Y04AAS1 6744421 YP_002122249.1 CDS HY04AAS1_1590 NC_011126.1 1508957 1509364 D TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; KEGG: sul:SYO3AOP1_1773 nucleotidyltransferase substrate binding protein, HI0074 family; nucleotidyltransferase substrate binding protein 1508957..1509364 Hydrogenobaculum sp. Y04AAS1 6744422 YP_002122250.1 CDS HY04AAS1_1591 NC_011126.1 1509366 1510604 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aae:aq_2045 folylpolyglutamate synthase / dihydrofolate synthase; FolC bifunctional protein complement(1509366..1510604) Hydrogenobaculum sp. Y04AAS1 6744423 YP_002122251.1 CDS HY04AAS1_1592 NC_011126.1 1510601 1512190 R KEGG: aae:aq_2158 poly A polymerase; TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(1510601..1512190) Hydrogenobaculum sp. Y04AAS1 6744424 YP_002122252.1 CDS HY04AAS1_1593 NC_011126.1 1512183 1512668 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: aae:aq_958 phosphotidylglycerophosphate synthase; CDP-alcohol phosphatidyltransferase complement(1512183..1512668) Hydrogenobaculum sp. Y04AAS1 6744425 YP_002122253.1 CDS HY04AAS1_1594 NC_011126.1 1512703 1514097 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: aae:aq_1175 amidophosphoribosyltransferase; amidophosphoribosyltransferase 1512703..1514097 Hydrogenobaculum sp. Y04AAS1 6744426 YP_002122254.1 CDS HY04AAS1_1595 NC_011126.1 1514094 1514312 D KEGG: mta:Moth_1699 hypothetical protein; hypothetical protein 1514094..1514312 Hydrogenobaculum sp. Y04AAS1 6744427 YP_002122255.1 CDS HY04AAS1_1596 NC_011126.1 1514338 1515414 D PFAM: protein of unknown function DUF354; KEGG: cff:CFF8240_1618 hypothetical protein; hypothetical protein 1514338..1515414 Hydrogenobaculum sp. Y04AAS1 6744428 YP_002122256.1 CDS HY04AAS1_1597 NC_011126.1 1515416 1517338 D TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: tdn:Tmden_0186 asparagine synthase, glutamine-hydrolyzing; asparagine synthase 1515416..1517338 Hydrogenobaculum sp. Y04AAS1 6744429 YP_002122257.1 CDS HY04AAS1_1598 NC_011126.1 1517327 1517644 R PFAM: CutA1 divalent ion tolerance protein; KEGG: aae:aq_1005 periplasmic divalent cation tolerance protein; CutA1 divalent ion tolerance protein complement(1517327..1517644) Hydrogenobaculum sp. Y04AAS1 6744430 YP_002122258.1 CDS HY04AAS1_1599 NC_011126.1 1517677 1517970 D hypothetical protein 1517677..1517970 Hydrogenobaculum sp. Y04AAS1 6744431 YP_002122259.1 CDS HY04AAS1_1600 NC_011126.1 1517971 1518117 D hypothetical protein 1517971..1518117 Hydrogenobaculum sp. Y04AAS1 6744432 YP_002122260.1 CDS HY04AAS1_1601 NC_011126.1 1518265 1518711 D KEGG: aae:aq_805 protein; hypothetical protein 1518265..1518711 Hydrogenobaculum sp. Y04AAS1 6744433 YP_002122261.1 CDS HY04AAS1_1602 NC_011126.1 1518708 1519925 D PFAM: protein of unknown function DUF208; KEGG: aae:aq_701 hypothetical protein; hypothetical protein 1518708..1519925 Hydrogenobaculum sp. Y04AAS1 6744434 YP_002122262.1 CDS HY04AAS1_1603 NC_011126.1 1519873 1520670 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1519873..1520670 Hydrogenobaculum sp. Y04AAS1 6744435 YP_002122263.1 CDS HY04AAS1_1604 NC_011126.1 1520673 1521308 D KEGG: aae:aq_581 protein; hypothetical protein 1520673..1521308 Hydrogenobaculum sp. Y04AAS1 6744436 YP_002122264.1 CDS HY04AAS1_1605 NC_011126.1 1521385 1522329 D KEGG: sai:Saci_2119 hypothetical protein; hypothetical protein 1521385..1522329 Hydrogenobaculum sp. Y04AAS1 6744437 YP_002122265.1 CDS HY04AAS1_1606 NC_011126.1 1522477 1523400 R KEGG: sul:SYO3AOP1_1000 hypothetical protein; hypothetical protein complement(1522477..1523400) Hydrogenobaculum sp. Y04AAS1 6744438 YP_002122266.1 CDS HY04AAS1_1607 NC_011126.1 1523619 1524839 D KEGG: sul:SYO3AOP1_1398 protein containing nucleotide-diphospho-sugar transferase domain; hypothetical protein 1523619..1524839 Hydrogenobaculum sp. Y04AAS1 6744439 YP_002122267.1 CDS HY04AAS1_1608 NC_011126.1 1524836 1525933 D TIGRFAM: methyltransferase FkbM family; KEGG: cbk:CLL_A2331 methyltransferase; methyltransferase FkbM family 1524836..1525933 Hydrogenobaculum sp. Y04AAS1 6744440 YP_002122268.1 CDS HY04AAS1_1609 NC_011126.1 1525938 1527188 R KEGG: sul:SYO3AOP1_1398 protein containing nucleotide-diphospho-sugar transferase domain; hypothetical protein complement(1525938..1527188) Hydrogenobaculum sp. Y04AAS1 6744441 YP_002122269.1 CDS HY04AAS1_1610 NC_011126.1 1527185 1528417 R KEGG: sul:SYO3AOP1_1398 protein containing nucleotide-diphospho-sugar transferase domain; hypothetical protein complement(1527185..1528417) Hydrogenobaculum sp. Y04AAS1 6744442 YP_002122270.1 CDS HY04AAS1_1611 NC_011126.1 1528434 1529375 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pvi:Cvib_0628 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1528434..1529375) Hydrogenobaculum sp. Y04AAS1 6744443 YP_002122271.1 CDS HY04AAS1_1612 NC_011126.1 1529552 1533157 D KEGG: aae:aq_1008 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1529552..1533157 Hydrogenobaculum sp. Y04AAS1 6744444 YP_002122272.1 CDS HY04AAS1_1613 NC_011126.1 1533214 1534224 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sul:SYO3AOP1_0741 phosphate ABC transporter, periplasmic phosphate-binding protein; phosphate ABC transporter, periplasmic phosphate-binding protein 1533214..1534224 Hydrogenobaculum sp. Y04AAS1 6744445 YP_002122273.1 CDS HY04AAS1_1614 NC_011126.1 1534243 1535238 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sul:SYO3AOP1_0742 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter, inner membrane subunit PstC 1534243..1535238 Hydrogenobaculum sp. Y04AAS1 6744446 YP_002122274.1 CDS HY04AAS1_1615 NC_011126.1 1535226 1536122 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sul:SYO3AOP1_0743 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstA 1535226..1536122 Hydrogenobaculum sp. Y04AAS1 6744447 YP_002122275.1 CDS HY04AAS1_1616 NC_011126.1 1536139 1536921 D KEGG: sul:SYO3AOP1_0744 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter; SMART: AAA ATPase; phosphate ABC transporter ATPase 1536139..1536921 Hydrogenobaculum sp. Y04AAS1 6744448 YP_002122276.1 CDS HY04AAS1_1617 NC_011126.1 1536952 1537551 D PFAM: Phosphoglycerate mutase; KEGG: aae:aq_1744 phosphoglycerate mutase; Phosphoglycerate mutase 1536952..1537551 Hydrogenobaculum sp. Y04AAS1 6744449 YP_002122277.1 CDS HY04AAS1_1618 NC_011126.1 1537548 1537835 D KEGG: pho:PH1355.1n hypothetical protein; hypothetical protein 1537548..1537835 Hydrogenobaculum sp. Y04AAS1 6744450 YP_002122278.1 CDS HY04AAS1_1619 NC_011126.1 1537839 1538270 D PFAM: SNARE associated Golgi protein; KEGG: aae:aq_2066 hypothetical protein; hypothetical protein 1537839..1538270 Hydrogenobaculum sp. Y04AAS1 6744451 YP_002122279.1 CDS HY04AAS1_1620 NC_011126.1 1538265 1539077 R PFAM: Prephenate dehydrogenase; KEGG: sul:SYO3AOP1_1358 prephenate dehydrogenase; Prephenate dehydrogenase complement(1538265..1539077) Hydrogenobaculum sp. Y04AAS1 6744452 YP_002122280.1 CDS HY04AAS1_1621 NC_011126.1 1539078 1539896 R PFAM: UspA domain protein; KEGG: aae:aq_1024 hypothetical protein; UspA domain-containing protein complement(1539078..1539896) Hydrogenobaculum sp. Y04AAS1 6744453 YP_002122281.1 CDS HY04AAS1_1622 NC_011126.1 1539889 1542249 R KEGG: aae:aq_1026 gyrase B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B complement(1539889..1542249) Hydrogenobaculum sp. Y04AAS1 6744454 YP_002122282.1 CDS HY04AAS1_1623 NC_011126.1 1542347 1544377 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sul:SYO3AOP1_0711 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1542347..1544377 Hydrogenobaculum sp. Y04AAS1 6744455 YP_002122283.1 CDS HY04AAS1_1624 NC_011126.1 1544402 1544911 D PFAM: protein of unknown function DUF996; KEGG: mja:MJ1644 hypothetical protein; hypothetical protein 1544402..1544911 Hydrogenobaculum sp. Y04AAS1 6744456 YP_002122284.1 CDS HY04AAS1_1625 NC_011126.1 1544914 1545606 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aae:aq_1111 hypothetical protein; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(1544914..1545606) Hydrogenobaculum sp. Y04AAS1 6744457 YP_002122285.1 CDS HY04AAS1_1626 NC_011126.1 1545655 1546119 D PFAM: protein of unknown function DUF150; KEGG: aae:aq_260 hypothetical protein; hypothetical protein 1545655..1546119 Hydrogenobaculum sp. Y04AAS1 6744458 YP_002122286.1 CDS nusA NC_011126.1 1546113 1547081 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1546113..1547081 Hydrogenobaculum sp. Y04AAS1 6744459 YP_002122287.1 CDS HY04AAS1_1628 NC_011126.1 1547081 1548328 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: (Uracil-5)-methyltransferase; KEGG: aae:aq_257 RNA methyltransferase; TrmA family RNA methyltransferase 1547081..1548328 Hydrogenobaculum sp. Y04AAS1 6744460 YP_002122288.1 CDS HY04AAS1_1629 NC_011126.1 1548325 1549590 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1548325..1549590 Hydrogenobaculum sp. Y04AAS1 6744461 YP_002122289.1 CDS HY04AAS1_1630 NC_011126.1 1549626 1550447 R KEGG: dol:Dole_0027 hypothetical protein; hypothetical protein complement(1549626..1550447) Hydrogenobaculum sp. Y04AAS1 6744462 YP_002122290.1 CDS HY04AAS1_1631 NC_011126.1 1550560 1551567 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pha:PSHAb0511 alcohol dehydrogenase, propanol-preferring; Alcohol dehydrogenase GroES domain-containing protein 1550560..1551567 Hydrogenobaculum sp. Y04AAS1 6744463 YP_002122291.1 CDS HY04AAS1_1632 NC_011126.1 1551578 1552012 D KEGG: sul:SYO3AOP1_0325 pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1551578..1552012 Hydrogenobaculum sp. Y04AAS1 6744464 YP_002122292.1 CDS HY04AAS1_1633 NC_011126.1 1552009 1553850 D KEGG: aae:aq_1761 hypothetical protein; Primosomal protein N' 1552009..1553850 Hydrogenobaculum sp. Y04AAS1 6744465 YP_002122293.1 CDS HY04AAS1_1634 NC_011126.1 1553918 1554487 D PFAM: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; KEGG: aae:aq_1192 hypothetical protein; CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit 1553918..1554487 Hydrogenobaculum sp. Y04AAS1 6744466 YP_002122294.1 CDS HY04AAS1_1635 NC_011126.1 1554502 1555707 D PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: aae:aq_1195 pyruvate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1554502..1555707 Hydrogenobaculum sp. Y04AAS1 6744467 YP_002122295.1 CDS HY04AAS1_1636 NC_011126.1 1555697 1556557 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: aae:aq_1196 pyruvate ferredoxin oxidoreductase, beta subunit; thiamine pyrophosphate TPP binding domain-containing protein 1555697..1556557 Hydrogenobaculum sp. Y04AAS1 6744468 YP_002122296.1 CDS HY04AAS1_1637 NC_011126.1 1556554 1557294 D TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: aae:aq_1200 pyruvate ferredoxin oxidoreductase, gamma subunit; pyruvate/ketoisovalerate oxidoreductase subunit gamma 1556554..1557294 Hydrogenobaculum sp. Y04AAS1 6744469 YP_002122297.1 CDS HY04AAS1_1638 NC_011126.1 1557330 1558379 R KEGG: sul:SYO3AOP1_1442 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(1557330..1558379) Hydrogenobaculum sp. Y04AAS1 6744470 YP_002122298.1 CDS HY04AAS1_1639 NC_011126.1 1558367 1558699 R PFAM: protein of unknown function UPF0102; KEGG: sul:SYO3AOP1_0546 protein of unknown function UPF0102; hypothetical protein complement(1558367..1558699) Hydrogenobaculum sp. Y04AAS1 6744471 YP_002122299.1 CDS HY04AAS1_1640 NC_011126.1 1558696 1559430 R PFAM: protein of unknown function DUF62; KEGG: aae:aq_2196 hypothetical protein; hypothetical protein complement(1558696..1559430) Hydrogenobaculum sp. Y04AAS1 6744472 HY04AAS1_R0001 tRNA HY04AAS1_R0001 NC_011126.1 10693 10765 R tRNA-Ala complement(10693..10765) Hydrogenobaculum sp. Y04AAS1 6742789 HY04AAS1_R0002 tRNA HY04AAS1_R0002 NC_011126.1 10773 10845 R tRNA-Pro complement(10773..10845) Hydrogenobaculum sp. Y04AAS1 6742790 HY04AAS1_R0003 tRNA HY04AAS1_R0003 NC_011126.1 17420 17512 D tRNA-Ser 17420..17512 Hydrogenobaculum sp. Y04AAS1 6742797 HY04AAS1_R0004 tRNA HY04AAS1_R0004 NC_011126.1 54546 54617 R tRNA-Cys complement(54546..54617) Hydrogenobaculum sp. Y04AAS1 6742840 HY04AAS1_R0006 tRNA HY04AAS1_R0006 NC_011126.1 97669 97741 D tRNA-Pro 97669..97741 Hydrogenobaculum sp. Y04AAS1 6742887 HY04AAS1_R0007 tRNA HY04AAS1_R0007 NC_011126.1 100490 100562 D tRNA-Pro 100490..100562 Hydrogenobaculum sp. Y04AAS1 6742892 HY04AAS1_R0008 tRNA HY04AAS1_R0008 NC_011126.1 107711 107784 D tRNA-Met 107711..107784 Hydrogenobaculum sp. Y04AAS1 6742903 HY04AAS1_R0009 tRNA HY04AAS1_R0009 NC_011126.1 127010 127083 D tRNA-Arg 127010..127083 Hydrogenobaculum sp. Y04AAS1 6742928 HY04AAS1_R0010 tRNA HY04AAS1_R0010 NC_011126.1 134881 134966 R tRNA-Leu complement(134881..134966) Hydrogenobaculum sp. Y04AAS1 6742937 HY04AAS1_R0011 tRNA HY04AAS1_R0011 NC_011126.1 136616 136688 D tRNA-Asn 136616..136688 Hydrogenobaculum sp. Y04AAS1 6742940 HY04AAS1_R0012 tRNA HY04AAS1_R0012 NC_011126.1 203060 203132 D tRNA-Arg 203060..203132 Hydrogenobaculum sp. Y04AAS1 6743012 HY04AAS1_R0013 tRNA HY04AAS1_R0013 NC_011126.1 222223 222309 D tRNA-Tyr 222223..222309 Hydrogenobaculum sp. Y04AAS1 6743040 HY04AAS1_R0014 tRNA HY04AAS1_R0014 NC_011126.1 222315 222386 D tRNA-Gly 222315..222386 Hydrogenobaculum sp. Y04AAS1 6743041 HY04AAS1_R0015 tRNA HY04AAS1_R0015 NC_011126.1 222409 222481 D tRNA-Thr 222409..222481 Hydrogenobaculum sp. Y04AAS1 6743042 HY04AAS1_R0016 tRNA HY04AAS1_R0016 NC_011126.1 223890 223962 D tRNA-Trp 223890..223962 Hydrogenobaculum sp. Y04AAS1 6743045 HY04AAS1_R0017 tRNA HY04AAS1_R0017 NC_011126.1 434550 434624 R tRNA-Gly complement(434550..434624) Hydrogenobaculum sp. Y04AAS1 6743288 HY04AAS1_R0019 tRNA HY04AAS1_R0019 NC_011126.1 545814 545885 D tRNA-Val 545814..545885 Hydrogenobaculum sp. Y04AAS1 6743407 HY04AAS1_R0020 tRNA HY04AAS1_R0020 NC_011126.1 552510 552583 D tRNA-Arg 552510..552583 Hydrogenobaculum sp. Y04AAS1 6743416 HY04AAS1_R0021 tRNA HY04AAS1_R0021 NC_011126.1 561958 562030 D tRNA-Val 561958..562030 Hydrogenobaculum sp. Y04AAS1 6743428 HY04AAS1_R0022 tRNA HY04AAS1_R0022 NC_011126.1 571594 571667 R tRNA-Arg complement(571594..571667) Hydrogenobaculum sp. Y04AAS1 6743436 HY04AAS1_R0023 tRNA HY04AAS1_R0023 NC_011126.1 612201 612273 R tRNA-His complement(612201..612273) Hydrogenobaculum sp. Y04AAS1 6743481 HY04AAS1_R0024 tRNA HY04AAS1_R0024 NC_011126.1 612293 612365 R tRNA-Gln complement(612293..612365) Hydrogenobaculum sp. Y04AAS1 6743482 HY04AAS1_R0025 tRNA HY04AAS1_R0025 NC_011126.1 617347 617429 R tRNA-Leu complement(617347..617429) Hydrogenobaculum sp. Y04AAS1 6743489 HY04AAS1_R0026 tRNA HY04AAS1_R0026 NC_011126.1 626939 627011 D tRNA-Lys 626939..627011 Hydrogenobaculum sp. Y04AAS1 6743497 HY04AAS1_R0027 tRNA HY04AAS1_R0027 NC_011126.1 670771 670854 D tRNA-Leu 670771..670854 Hydrogenobaculum sp. Y04AAS1 6743540 HY04AAS1_R0028 tRNA HY04AAS1_R0028 NC_011126.1 740516 740587 D tRNA-Gly 740516..740587 Hydrogenobaculum sp. Y04AAS1 6743604 HY04AAS1_R0031 tRNA HY04AAS1_R0031 NC_011126.1 789501 789572 R tRNA-Ala complement(789501..789572) Hydrogenobaculum sp. Y04AAS1 6743648 HY04AAS1_R0032 tRNA HY04AAS1_R0032 NC_011126.1 789593 789667 R tRNA-Ile complement(789593..789667) Hydrogenobaculum sp. Y04AAS1 6743649 HY04AAS1_R0035 tRNA HY04AAS1_R0035 NC_011126.1 948895 948967 R tRNA-Ala complement(948895..948967) Hydrogenobaculum sp. Y04AAS1 6743825 HY04AAS1_R0036 tRNA HY04AAS1_R0036 NC_011126.1 955050 955122 R tRNA-Met complement(955050..955122) Hydrogenobaculum sp. Y04AAS1 6743833 HY04AAS1_R0037 tRNA HY04AAS1_R0037 NC_011126.1 956875 956947 R tRNA-Thr complement(956875..956947) Hydrogenobaculum sp. Y04AAS1 6743836 HY04AAS1_R0038 tRNA HY04AAS1_R0038 NC_011126.1 1022735 1022812 R tRNA-Glu complement(1022735..1022812) Hydrogenobaculum sp. Y04AAS1 6743919 HY04AAS1_R0039 tRNA HY04AAS1_R0039 NC_011126.1 1051239 1051328 R tRNA-Ser complement(1051239..1051328) Hydrogenobaculum sp. Y04AAS1 6743951 HY04AAS1_R0040 tRNA HY04AAS1_R0040 NC_011126.1 1160374 1160446 D tRNA-Val 1160374..1160446 Hydrogenobaculum sp. Y04AAS1 6744070 HY04AAS1_R0041 tRNA HY04AAS1_R0041 NC_011126.1 1187014 1187101 D tRNA-Ser 1187014..1187101 Hydrogenobaculum sp. Y04AAS1 6744095 HY04AAS1_R0044 tRNA HY04AAS1_R0044 NC_011126.1 1252423 1252494 R tRNA-Ala complement(1252423..1252494) Hydrogenobaculum sp. Y04AAS1 6744161 HY04AAS1_R0045 tRNA HY04AAS1_R0045 NC_011126.1 1252515 1252589 R tRNA-Ile complement(1252515..1252589) Hydrogenobaculum sp. Y04AAS1 6744162 HY04AAS1_R0047 tRNA HY04AAS1_R0047 NC_011126.1 1281358 1281440 R tRNA-Leu complement(1281358..1281440) Hydrogenobaculum sp. Y04AAS1 6744191 HY04AAS1_R0048 tRNA HY04AAS1_R0048 NC_011126.1 1348801 1348873 R tRNA-Thr complement(1348801..1348873) Hydrogenobaculum sp. Y04AAS1 6744255 HY04AAS1_R0049 tRNA HY04AAS1_R0049 NC_011126.1 1363429 1363506 D tRNA-Asp 1363429..1363506 Hydrogenobaculum sp. Y04AAS1 6744268 HY04AAS1_R0050 tRNA HY04AAS1_R0050 NC_011126.1 1363521 1363592 D tRNA-Met 1363521..1363592 Hydrogenobaculum sp. Y04AAS1 6744269 HY04AAS1_R0051 tRNA HY04AAS1_R0051 NC_011126.1 1383334 1383416 D tRNA-Leu 1383334..1383416 Hydrogenobaculum sp. Y04AAS1 6744290 HY04AAS1_R0052 tRNA HY04AAS1_R0052 NC_011126.1 1395953 1396044 D tRNA-Ser 1395953..1396044 Hydrogenobaculum sp. Y04AAS1 6744308 HY04AAS1_R0053 tRNA HY04AAS1_R0053 NC_011126.1 1408969 1409041 R tRNA-Phe complement(1408969..1409041) Hydrogenobaculum sp. Y04AAS1 6744321 HY04AAS1_R0054 tRNA HY04AAS1_R0054 NC_011126.1 1495415 1495487 R tRNA-Lys complement(1495415..1495487) Hydrogenobaculum sp. Y04AAS1 6744410 HY04AAS1_R0029 rRNA HY04AAS1_R0029 NC_011126.1 786326 786445 R 5S ribosomal RNA complement(786326..786445) Hydrogenobaculum sp. Y04AAS1 6743646 HY04AAS1_R0030 rRNA HY04AAS1_R0030 NC_011126.1 786502 789427 R 23S ribosomal RNA complement(786502..789427) Hydrogenobaculum sp. Y04AAS1 6743647 HY04AAS1_R0033 rRNA HY04AAS1_R0033 NC_011126.1 789720 791268 R 16S ribosomal RNA complement(789720..791268) Hydrogenobaculum sp. Y04AAS1 6743650 HY04AAS1_R0042 rRNA HY04AAS1_R0042 NC_011126.1 1249248 1249367 R 5S ribosomal RNA complement(1249248..1249367) Hydrogenobaculum sp. Y04AAS1 6744159 HY04AAS1_R0043 rRNA HY04AAS1_R0043 NC_011126.1 1249424 1252349 R 23S ribosomal RNA complement(1249424..1252349) Hydrogenobaculum sp. Y04AAS1 6744160 HY04AAS1_R0046 rRNA HY04AAS1_R0046 NC_011126.1 1252642 1254190 R 16S ribosomal RNA complement(1252642..1254190) Hydrogenobaculum sp. Y04AAS1 6744163