-- dump date   	20140619_114903
-- class       	Genbank::Contig
-- table       	contig
-- table       	main
-- field 1	id
-- field 2	date
-- field 3	dblink
-- field 4	file
-- field 5	form
-- field 6	genbank_file
-- field 7	length
-- field 8	organism
-- field 9	reference
-- field 10	seq_dir
-- field 11	taxid
-- field 12	taxo_group
-- field 13	type
-- header
-- id	date	dblink	file	form	genbank_file	length	organism	reference	seq_dir	taxid	taxo_group	type
NC_009138.1	26-AUG-2013	Project: 58291 BioProject: PRJNA58291	NC_009138.1.raw	circular	NC_009138.gbk	3424307	Herminiimonas arsenicoxydans	1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M.,1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M.,1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S.,1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P.,1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N.1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 :1  (bases 1 to 3424307) Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. arsenic-rich environments enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in ArsenoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage. Each annotation includes a confidence level as follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism 2b : Function of strongly homologous gene 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology 4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS 7 : Gene remnant2  (bases 1 to 3424307) Information, NIH, Bethesda, MD 20894, USA3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA &3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4:3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur,3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur, Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur,3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur, Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur, Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR55573  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur, Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur, Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557 CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9:3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur, Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur, Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557 CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9: UPR9036 CNRS, Marseille, France 10: UMR7517 CNRS & Universite Louis3  (bases 1 to 3424307) BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) Genoscope, UMR8030 CNRS, Evry Cedex, France 3: UMR6191 CNRS, CEA & Universite Aix-Marseille II, Saint-Paul-lez-Durance, France 4: UPR9043 CNRS, Marseille, France 5: URA2171, Institut Pasteur, Paris, France 6: UMR7509 CNRS & Universite Louis Pasteur, Strasbourg, France 7: UMR5100 CNRS, Toulouse, France 8: UMR5557 CNRS & Universite Claude Bernard - Lyon 1, Villeurbanne, France 9: UPR9036 CNRS, Marseille, France 10: UMR7517 CNRS & Universite Louis Pasteur, Strasbourg, France	/workspace/rsat/public_html/data/genomes/Herminiimonas_arsenicoxydans_uid58291/genome	204773	CON	DNA