-- dump date 20140619_114343 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 907239000001 SEQ_END SEQ_END NC_017361.1 1653913 1653913 DR NC_017361.1; contig end 1653913..1653913 Helicobacter pylori SouthAfrica7 907239000002 SEQ_END SEQ_END NC_017373.1 25916 25916 DR NC_017373.1; contig end 25916..25916 Helicobacter pylori SouthAfrica7 YP_005770638.1 CDS nusB NC_017361.1 11 427 R COG0781 Transcription termination factor; transcription antitermination protein NusB complement(11..427) Helicobacter pylori SouthAfrica7 12350103 YP_005770639.1 CDS ribH NC_017361.1 429 899 R COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase complement(429..899) Helicobacter pylori SouthAfrica7 12350105 YP_005770640.1 CDS HPSA_00015 NC_017361.1 909 1739 R COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(909..1739) Helicobacter pylori SouthAfrica7 12350107 YP_005770641.1 CDS HPSA_00020 NC_017361.1 1726 2391 R COG0288 Carbonic anhydrase; carbonic anhydrase complement(1726..2391) Helicobacter pylori SouthAfrica7 12350109 YP_005770642.1 CDS HPSA_00025 NC_017361.1 2512 3195 D COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2512..3195 Helicobacter pylori SouthAfrica7 12350113 YP_005770643.1 CDS panC NC_017361.1 3195 4025 D COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase 3195..4025 Helicobacter pylori SouthAfrica7 12350115 YP_005770644.1 CDS HPSA_00035 NC_017361.1 5288 7282 R outer membrane protein HopZ complement(5288..7282) Helicobacter pylori SouthAfrica7 12350170 YP_005770645.1 CDS HPSA_00040 NC_017361.1 7649 7741 D hypothetical protein 7649..7741 Helicobacter pylori SouthAfrica7 12350171 YP_005770646.1 CDS groEL NC_017361.1 7760 9400 R COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL complement(7760..9400) Helicobacter pylori SouthAfrica7 12350172 YP_005770647.1 CDS groES NC_017361.1 9425 9781 R COG0234 Co-chaperonin GroES (HSP10); co-chaperonin GroES complement(9425..9781) Helicobacter pylori SouthAfrica7 12350173 YP_005770648.1 CDS dnaG NC_017361.1 10072 11751 D COG0358 DNA primase (bacterial type); DNA primase 10072..11751 Helicobacter pylori SouthAfrica7 12350174 YP_005770649.1 CDS HPSA_00060 NC_017361.1 11748 12800 D COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA methyltransferase 11748..12800 Helicobacter pylori SouthAfrica7 12350175 YP_005770650.1 CDS HPSA_00065 NC_017361.1 12892 13719 D hypothetical protein 12892..13719 Helicobacter pylori SouthAfrica7 12350176 YP_005770651.1 CDS HPSA_00070 NC_017361.1 13865 14146 D ComB2 competence protein 13865..14146 Helicobacter pylori SouthAfrica7 12350177 YP_005770652.1 CDS HPSA_00075 NC_017361.1 14146 14409 D ComB3 competence protein 14146..14409 Helicobacter pylori SouthAfrica7 12350178 YP_005770653.1 CDS HPSA_00080 NC_017361.1 14411 16774 D COG3451 Type IV secretory pathway, VirB4 components; DNA transfer protein 14411..16774 Helicobacter pylori SouthAfrica7 12350179 YP_005770654.1 CDS HPSA_00085 NC_017361.1 17075 18415 D COG3014 Uncharacterized protein conserved in bacteria; hypothetical protein 17075..18415 Helicobacter pylori SouthAfrica7 12350180 YP_005770655.1 CDS HPSA_00090 NC_017361.1 18510 19475 D COG0835 Chemotaxis signal transduction protein; chemotaxis protein 18510..19475 Helicobacter pylori SouthAfrica7 12350181 YP_005770656.1 CDS HPSA_00095 NC_017361.1 19472 20689 D COG0019 Diaminopimelate decarboxylase; carboxynorspermidine decarboxylase 19472..20689 Helicobacter pylori SouthAfrica7 12350182 YP_005770657.1 CDS HPSA_00100 NC_017361.1 20731 21303 R COG0671 Membrane-associated phospholipid phosphatase; lipid A 1-phosphatase complement(20731..21303) Helicobacter pylori SouthAfrica7 12350183 YP_005770658.1 CDS HPSA_00105 NC_017361.1 21314 22885 R COG2194 Predicted membrane-associated, metal-dependent hydrolase; lipid A phosphoethanolamine transferase complement(21314..22885) Helicobacter pylori SouthAfrica7 12350184 YP_005770659.1 CDS HPSA_00110 NC_017361.1 23931 24044 R hypothetical protein complement(23931..24044) Helicobacter pylori SouthAfrica7 12350185 YP_005770660.1 CDS HPSA_00115 NC_017361.1 24054 26165 R hypothetical protein complement(24054..26165) Helicobacter pylori SouthAfrica7 12350186 YP_005770661.1 CDS gltA NC_017361.1 26631 27911 R COG0372 Citrate synthase; type II citrate synthase complement(26631..27911) Helicobacter pylori SouthAfrica7 12350187 YP_005770662.1 CDS HPSA_00125 NC_017361.1 28111 29388 D COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 28111..29388 Helicobacter pylori SouthAfrica7 12350188 YP_005770663.1 CDS HPSA_00130 NC_017361.1 29456 29980 D hypothetical protein 29456..29980 Helicobacter pylori SouthAfrica7 12350189 YP_005770664.1 CDS HPSA_00135 NC_017361.1 29957 30613 R COG0132 Dethiobiotin synthetase; dethiobiotin synthetase complement(29957..30613) Helicobacter pylori SouthAfrica7 12350190 YP_005770665.1 CDS HPSA_00140 NC_017361.1 30617 32344 R COG0515 Serine/threonine protein kinase; hypothetical protein complement(30617..32344) Helicobacter pylori SouthAfrica7 12350191 YP_005770666.1 CDS HPSA_00145 NC_017361.1 32468 32881 D COG0589 Universal stress protein UspA and related nucleotide-binding proteins; hypothetical protein 32468..32881 Helicobacter pylori SouthAfrica7 12350192 YP_005770667.1 CDS HPSA_00150 NC_017361.1 32883 33158 D COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adapter protein clpS 32883..33158 Helicobacter pylori SouthAfrica7 12350193 YP_005770668.1 CDS HPSA_00155 NC_017361.1 33158 35380 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease, ATP-binding subunit ClpA 33158..35380 Helicobacter pylori SouthAfrica7 12350194 YP_005770669.1 CDS HPSA_00160 NC_017361.1 35370 35720 D COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase 35370..35720 Helicobacter pylori SouthAfrica7 12350195 YP_005770670.1 CDS HPSA_00165 NC_017361.1 35731 36024 D COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 35731..36024 Helicobacter pylori SouthAfrica7 12350196 YP_005770671.1 CDS HPSA_00170 NC_017361.1 36024 37019 D COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; hypothetical protein 36024..37019 Helicobacter pylori SouthAfrica7 12350197 YP_005770672.1 CDS HPSA_00175 NC_017361.1 37025 38089 D hypothetical protein 37025..38089 Helicobacter pylori SouthAfrica7 12350198 YP_005770673.1 CDS HPSA_00180 NC_017361.1 38105 38218 D Comb7 competence protein 38105..38218 Helicobacter pylori SouthAfrica7 12350199 YP_005770674.1 CDS HPSA_00185 NC_017361.1 38215 38958 D COG3736 Type IV secretory pathway, component VirB8; ComB1 protein 38215..38958 Helicobacter pylori SouthAfrica7 12350200 YP_005770675.1 CDS HPSA_00190 NC_017361.1 38958 39938 D COG3504 Type IV secretory pathway, VirB9 components; ComB2 protein 38958..39938 Helicobacter pylori SouthAfrica7 12350201 YP_005770676.1 CDS HPSA_00195 NC_017361.1 39931 41073 D COG2948 Type IV secretory pathway, VirB10 components; ComB10 competence protein 39931..41073 Helicobacter pylori SouthAfrica7 12350202 YP_005770677.1 CDS HPSA_00200 NC_017361.1 41138 42550 D COG0836 Mannose-1-phosphate guanylyltransferase; mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase 41138..42550 Helicobacter pylori SouthAfrica7 12350203 YP_005770678.1 CDS HPSA_00205 NC_017361.1 42570 43715 D COG1089 GDP-D-mannose dehydratase; GDP-D-mannose dehydratase 42570..43715 Helicobacter pylori SouthAfrica7 12350204 YP_005770679.1 CDS HPSA_00210 NC_017361.1 43708 44640 D COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-fucose synthetase 43708..44640 Helicobacter pylori SouthAfrica7 12350205 YP_005770680.1 CDS HPSA_00215 NC_017361.1 44757 44903 D hypothetical protein 44757..44903 Helicobacter pylori SouthAfrica7 12350206 YP_005770681.1 CDS HPSA_00220 NC_017361.1 45003 45425 R hypothetical protein complement(45003..45425) Helicobacter pylori SouthAfrica7 12350207 YP_005770682.1 CDS HPSA_00225 NC_017361.1 45343 45471 R hypothetical protein complement(45343..45471) Helicobacter pylori SouthAfrica7 12350208 YP_005770683.1 CDS HPSA_00230 NC_017361.1 45588 46586 R COG0309 Hydrogenase maturation factor; hydrogenase expression/formation protein complement(45588..46586) Helicobacter pylori SouthAfrica7 12350209 YP_005770684.1 CDS HPSA_00235 NC_017361.1 46598 48871 R COG0068 Hydrogenase maturation factor; transcriptional regulatory protein HypF complement(46598..48871) Helicobacter pylori SouthAfrica7 12350210 YP_005770685.1 CDS HPSA_00240 NC_017361.1 48847 49839 R COG2957 Peptidylarginine deiminase and related enzymes; hypothetical protein complement(48847..49839) Helicobacter pylori SouthAfrica7 12350211 YP_005770686.1 CDS HPSA_00245 NC_017361.1 49902 50600 R COG0863 DNA modification methylase; adenine specific DNA methyltransferase (putative type II) complement(49902..50600) Helicobacter pylori SouthAfrica7 12350212 YP_005770687.1 CDS HPSA_00250 NC_017361.1 50578 51663 R COG0270 Site-specific DNA methylase; cytosine specific DNA methyltransferase complement(50578..51663) Helicobacter pylori SouthAfrica7 12350213 YP_005770688.1 CDS HPSA_00255 NC_017361.1 51712 52887 R COG1403 Restriction endonuclease; restriction endonuclease complement(51712..52887) Helicobacter pylori SouthAfrica7 12350214 YP_005770689.1 CDS HPSA_00260 NC_017361.1 53090 54580 R COG0591 Na+/proline symporter; sodium/proline symporter complement(53090..54580) Helicobacter pylori SouthAfrica7 12350215 YP_005770690.1 CDS HPSA_00265 NC_017361.1 54604 58161 R COG0506 Proline dehydrogenase; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase complement(54604..58161) Helicobacter pylori SouthAfrica7 12350216 YP_005770691.1 CDS HPSA_00270 NC_017361.1 58541 58756 D hypothetical protein 58541..58756 Helicobacter pylori SouthAfrica7 12350217 YP_005770692.1 CDS HPSA_00275 NC_017361.1 59424 60032 D hypothetical protein 59424..60032 Helicobacter pylori SouthAfrica7 12350218 YP_005770693.1 CDS HPSA_00280 NC_017361.1 60034 60822 D COG1511 Predicted membrane protein; hypothetical protein 60034..60822 Helicobacter pylori SouthAfrica7 12350219 YP_005770694.1 CDS HPSA_00285 NC_017361.1 60812 61465 D hypothetical protein 60812..61465 Helicobacter pylori SouthAfrica7 12350220 YP_005770695.1 CDS HPSA_00300 NC_017361.1 63855 64421 D hypothetical protein 63855..64421 Helicobacter pylori SouthAfrica7 12350221 YP_005770696.1 CDS HPSA_00305 NC_017361.1 64437 64697 D hypothetical protein 64437..64697 Helicobacter pylori SouthAfrica7 12350222 YP_005770697.1 CDS HPSA_00310 NC_017361.1 64708 66411 D hypothetical protein 64708..66411 Helicobacter pylori SouthAfrica7 12350223 YP_005770698.1 CDS HPSA_00315 NC_017361.1 66381 66806 D hypothetical protein 66381..66806 Helicobacter pylori SouthAfrica7 12350224 YP_005770699.1 CDS HPSA_00330 NC_017361.1 67170 67946 D COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; ATP-binding protein 67170..67946 Helicobacter pylori SouthAfrica7 12350225 YP_005770700.1 CDS HPSA_00335 NC_017361.1 67984 68082 D ATP-binding protein 67984..68082 Helicobacter pylori SouthAfrica7 12350226 YP_005770701.1 CDS HPSA_00340 NC_017361.1 68079 69614 D COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; ATP-binding protein 68079..69614 Helicobacter pylori SouthAfrica7 12350227 YP_005770702.1 CDS HPSA_00345 NC_017361.1 69947 70729 R COG0829 Urease accessory protein UreH; urease accessory protein UreD complement(69947..70729) Helicobacter pylori SouthAfrica7 12350228 YP_005770703.1 CDS HPSA_00350 NC_017361.1 70729 71328 R COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; urease accessory protein UreG complement(70729..71328) Helicobacter pylori SouthAfrica7 12350229 YP_005770704.1 CDS HPSA_00355 NC_017361.1 71359 72105 R COG0830 Urease accessory protein UreF; hypothetical protein complement(71359..72105) Helicobacter pylori SouthAfrica7 12350230 YP_005770705.1 CDS ureE NC_017361.1 72126 72638 R COG2371 Urease accessory protein UreE; urease accessory protein UreE complement(72126..72638) Helicobacter pylori SouthAfrica7 12350231 YP_005770706.1 CDS HPSA_00365 NC_017361.1 72640 73227 R COG1138 Cytochrome c biogenesis factor; Urease accessory protein ureI complement(72640..73227) Helicobacter pylori SouthAfrica7 12350232 YP_005770707.1 CDS ureB NC_017361.1 73419 75128 R COG0804 Urea amidohydrolase (urease) alpha subunit; urease subunit beta complement(73419..75128) Helicobacter pylori SouthAfrica7 12350233 YP_005770708.1 CDS HPSA_00375 NC_017361.1 75132 75848 R COG0831 Urea amidohydrolase (urease) gamma subunit; urease subunit alpha complement(75132..75848) Helicobacter pylori SouthAfrica7 12350234 YP_005770709.1 CDS lspA NC_017361.1 76190 76663 R COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase complement(76190..76663) Helicobacter pylori SouthAfrica7 12350236 YP_005770710.1 CDS glmM NC_017361.1 76657 77994 R COG1109 Phosphomannomutase; phosphoglucosamine mutase complement(76657..77994) Helicobacter pylori SouthAfrica7 12350237 YP_005770711.1 CDS rpsT NC_017361.1 78084 78353 D COG0268 Ribosomal protein S20; 30S ribosomal protein S20 78084..78353 Helicobacter pylori SouthAfrica7 12350238 YP_005770712.1 CDS prfA NC_017361.1 78478 79536 D COG0216 Protein chain release factor A; peptide chain release factor 1 78478..79536 Helicobacter pylori SouthAfrica7 12350239 YP_005770713.1 CDS HPSA_00405 NC_017361.1 80119 80373 D hypothetical protein 80119..80373 Helicobacter pylori SouthAfrica7 12350240 YP_005770714.1 CDS HPSA_00410 NC_017361.1 80385 82154 D outer membrane protein HorA 80385..82154 Helicobacter pylori SouthAfrica7 12350241 YP_005770715.1 CDS HPSA_00415 NC_017361.1 82396 84195 D hypothetical protein 82396..84195 Helicobacter pylori SouthAfrica7 12350242 YP_005770716.1 CDS HPSA_00420 NC_017361.1 84518 86539 R COG0840 Methyl-accepting chemotaxis protein; hypothetical protein complement(84518..86539) Helicobacter pylori SouthAfrica7 12350243 YP_005770717.1 CDS rpsI NC_017361.1 86685 87074 R COG0103 Ribosomal protein S9; 30S ribosomal protein S9 complement(86685..87074) Helicobacter pylori SouthAfrica7 12350244 YP_005770718.1 CDS rplM NC_017361.1 87071 87496 R COG0102 Ribosomal protein L13; 50S ribosomal protein L13 complement(87071..87496) Helicobacter pylori SouthAfrica7 12350245 YP_005770719.1 CDS HPSA_00435 NC_017361.1 87831 88019 R hypothetical protein complement(87831..88019) Helicobacter pylori SouthAfrica7 12350246 YP_005770720.1 CDS HPSA_00440 NC_017361.1 88026 89378 R COG0579 Predicted dehydrogenase; hypothetical protein complement(88026..89378) Helicobacter pylori SouthAfrica7 12350247 YP_005770721.1 CDS HPSA_00445 NC_017361.1 89432 90811 R COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein complement(89432..90811) Helicobacter pylori SouthAfrica7 12350248 YP_005770722.1 CDS HPSA_00450 NC_017361.1 90824 92881 R COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD complement(90824..92881) Helicobacter pylori SouthAfrica7 12350249 YP_005770723.1 CDS HPSA_00455 NC_017361.1 93115 93249 D hypothetical protein 93115..93249 Helicobacter pylori SouthAfrica7 12350250 YP_005770724.1 CDS HPSA_00460 NC_017361.1 93276 93971 R COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(93276..93971) Helicobacter pylori SouthAfrica7 12350251 YP_005770725.1 CDS HPSA_00465 NC_017361.1 93982 94911 R COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase complement(93982..94911) Helicobacter pylori SouthAfrica7 12350252 YP_005770726.1 CDS HPSA_00475 NC_017361.1 95299 96189 D type II restriction enzyme R protein (hsdR) 95299..96189 Helicobacter pylori SouthAfrica7 12350254 YP_005770727.1 CDS HPSA_00480 NC_017361.1 96170 97024 D COG0863 DNA modification methylase; typeII adenine methyltransferase 96170..97024 Helicobacter pylori SouthAfrica7 12350255 YP_005770728.1 CDS HPSA_00485 NC_017361.1 97021 97920 R putative alpha(1,2)fucosyltransferase complement(97021..97920) Helicobacter pylori SouthAfrica7 12350256 YP_005770729.1 CDS HPSA_00490 NC_017361.1 98020 98550 R hypothetical protein complement(98020..98550) Helicobacter pylori SouthAfrica7 12350257 YP_005770730.1 CDS HPSA_00495 NC_017361.1 98623 99567 D COG1052 Lactate dehydrogenase and related dehydrogenases; 2-hydroxyacid dehydrogenase 98623..99567 Helicobacter pylori SouthAfrica7 12350258 YP_005770731.1 CDS HPSA_00500 NC_017361.1 99619 99750 D hypothetical protein 99619..99750 Helicobacter pylori SouthAfrica7 12350259 YP_005770732.1 CDS HPSA_00505 NC_017361.1 99802 100515 R hypothetical protein complement(99802..100515) Helicobacter pylori SouthAfrica7 12350260 YP_005770733.1 CDS HPSA_00510 NC_017361.1 100600 102054 R COG0498 Threonine synthase; threonine synthase complement(100600..102054) Helicobacter pylori SouthAfrica7 12350261 YP_005770734.1 CDS HPSA_00515 NC_017361.1 102256 104283 D COG0840 Methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis protein 102256..104283 Helicobacter pylori SouthAfrica7 12350262 YP_005770735.1 CDS HPSA_00520 NC_017361.1 104283 105389 D COG1636 Uncharacterized protein conserved in bacteria; hypothetical protein 104283..105389 Helicobacter pylori SouthAfrica7 12350263 YP_005770736.1 CDS HPSA_00525 NC_017361.1 105789 106550 D hypothetical protein 105789..106550 Helicobacter pylori SouthAfrica7 12350264 YP_005770737.1 CDS HPSA_00530 NC_017361.1 106522 107292 R COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase family protein complement(106522..107292) Helicobacter pylori SouthAfrica7 12350265 YP_005770738.1 CDS HPSA_00535 NC_017361.1 107329 109026 R COG0840 Methyl-accepting chemotaxis protein; hypothetical protein complement(107329..109026) Helicobacter pylori SouthAfrica7 12350266 YP_005770739.1 CDS HPSA_00540 NC_017361.1 109603 110070 R COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase complement(109603..110070) Helicobacter pylori SouthAfrica7 12350267 YP_005770740.1 CDS HPSA_00545 NC_017361.1 110107 111249 R COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase complement(110107..111249) Helicobacter pylori SouthAfrica7 12350268 YP_005770741.1 CDS HPSA_00550 NC_017361.1 111274 112188 R COG0031 Cysteine synthase; cysteine synthetase complement(111274..112188) Helicobacter pylori SouthAfrica7 12350269 YP_005770742.1 CDS HPSA_00555 NC_017361.1 112303 112905 D COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; hypothetical protein 112303..112905 Helicobacter pylori SouthAfrica7 12350270 YP_005770743.1 CDS dnaK NC_017361.1 113067 114929 R COG0443 Molecular chaperone; molecular chaperone DnaK complement(113067..114929) Helicobacter pylori SouthAfrica7 12350271 YP_005770744.1 CDS HPSA_00565 NC_017361.1 114957 115511 R COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE complement(114957..115511) Helicobacter pylori SouthAfrica7 12350272 YP_005770745.1 CDS HPSA_00570 NC_017361.1 115508 116278 R COG1420 Transcriptional regulator of heat shock gene; heat-inducible transcription repressor complement(115508..116278) Helicobacter pylori SouthAfrica7 12350273 YP_005770746.1 CDS HPSA_00575 NC_017361.1 116552 117190 D COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein 116552..117190 Helicobacter pylori SouthAfrica7 12350274 YP_005770747.1 CDS HPSA_00580 NC_017361.1 117210 117506 D hypothetical protein 117210..117506 Helicobacter pylori SouthAfrica7 12350275 YP_005770748.1 CDS HPSA_00585 NC_017361.1 117516 119399 R COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein complement(117516..119399) Helicobacter pylori SouthAfrica7 12350276 YP_005770749.1 CDS HPSA_00590 NC_017361.1 119460 121004 R COG1344 Flagellin and related hook-associated proteins; flagellin B complement(119460..121004) Helicobacter pylori SouthAfrica7 12350277 YP_005770750.1 CDS HPSA_00595 NC_017361.1 121169 123379 D COG0550 Topoisomerase IA; DNA topoisomerase I 121169..123379 Helicobacter pylori SouthAfrica7 12350278 YP_005770751.1 CDS HPSA_00600 NC_017361.1 123372 124298 D COG0731 Fe-S oxidoreductases; hypothetical protein 123372..124298 Helicobacter pylori SouthAfrica7 12350279 YP_005770752.1 CDS HPSA_00605 NC_017361.1 124441 125658 R hypothetical protein complement(124441..125658) Helicobacter pylori SouthAfrica7 12350280 YP_005770753.1 CDS HPSA_00610 NC_017361.1 125755 128193 R COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase complement(125755..128193) Helicobacter pylori SouthAfrica7 12350281 YP_005770754.1 CDS HPSA_00615 NC_017361.1 128397 128510 D hypothetical protein 128397..128510 Helicobacter pylori SouthAfrica7 12350282 YP_005770755.1 CDS thrS NC_017361.1 128550 130388 D COG0441 Threonyl-tRNA synthetase; threonyl-tRNA synthetase 128550..130388 Helicobacter pylori SouthAfrica7 12350283 YP_005770756.1 CDS infC NC_017361.1 130385 130996 D COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 130385..130996 Helicobacter pylori SouthAfrica7 12350284 YP_005770757.1 CDS rpmI NC_017361.1 130977 131171 D COG0291 Ribosomal protein L35; 50S ribosomal protein L35 130977..131171 Helicobacter pylori SouthAfrica7 12350285 YP_005770758.1 CDS rplT NC_017361.1 131266 131616 D COG0292 Ribosomal protein L20; 50S ribosomal protein L20 131266..131616 Helicobacter pylori SouthAfrica7 12350286 YP_005770759.1 CDS HPSA_00640 NC_017361.1 131818 132681 D Outer membrane protein HorB; putative signal peptide 131818..132681 Helicobacter pylori SouthAfrica7 12350287 YP_005770760.1 CDS HPSA_00645 NC_017361.1 133031 133468 D hypothetical protein 133031..133468 Helicobacter pylori SouthAfrica7 12350288 YP_005770761.1 CDS HPSA_00650 NC_017361.1 133704 134567 D hypothetical protein 133704..134567 Helicobacter pylori SouthAfrica7 12350289 YP_005770762.1 CDS HPSA_00655 NC_017361.1 135232 135330 R hypothetical protein complement(135232..135330) Helicobacter pylori SouthAfrica7 12350290 YP_005770763.1 CDS HPSA_00660 NC_017361.1 135329 135445 D hypothetical protein 135329..135445 Helicobacter pylori SouthAfrica7 12350291 YP_005770764.1 CDS HPSA_00665 NC_017361.1 135630 136997 R COG1760 L-serine deaminase; L-serine dehydratase complement(135630..136997) Helicobacter pylori SouthAfrica7 12350292 YP_005770765.1 CDS HPSA_00670 NC_017361.1 136997 138238 R COG0814 Amino acid permeases; L-serine transporter complement(136997..138238) Helicobacter pylori SouthAfrica7 12350293 YP_005770766.1 CDS HPSA_00675 NC_017361.1 138419 139768 D COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 138419..139768 Helicobacter pylori SouthAfrica7 12350294 YP_005770767.1 CDS HPSA_00680 NC_017361.1 140057 140191 D hypothetical protein 140057..140191 Helicobacter pylori SouthAfrica7 12350295 YP_005770768.1 CDS HPSA_00685 NC_017361.1 140414 140872 R COG1225 Peroxiredoxin; bacterioferritin comigratory protein complement(140414..140872) Helicobacter pylori SouthAfrica7 12350296 YP_005770769.1 CDS HPSA_00690 NC_017361.1 140882 141517 R COG1556 Uncharacterized conserved protein; hypothetical protein complement(140882..141517) Helicobacter pylori SouthAfrica7 12350297 YP_005770770.1 CDS HPSA_00695 NC_017361.1 141510 142955 R COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; iron-sulfur cluster binding protein complement(141510..142955) Helicobacter pylori SouthAfrica7 12350298 YP_005770771.1 CDS HPSA_00700 NC_017361.1 142984 143712 R COG0247 Fe-S oxidoreductase; Fe-S oxidoreductase complement(142984..143712) Helicobacter pylori SouthAfrica7 12350299 YP_005770772.1 CDS HPSA_00705 NC_017361.1 143933 145582 D COG1620 L-lactate permease; L-lactate permease 143933..145582 Helicobacter pylori SouthAfrica7 12350300 YP_005770773.1 CDS HPSA_00710 NC_017361.1 145631 147286 D COG1620 L-lactate permease; L-lactate permease 145631..147286 Helicobacter pylori SouthAfrica7 12350301 YP_005770774.1 CDS HPSA_00715 NC_017361.1 147310 148296 R COG1194 A/G-specific DNA glycosylase; DNA glycosylase MutY complement(147310..148296) Helicobacter pylori SouthAfrica7 12350302 YP_005770775.1 CDS HPSA_00720 NC_017361.1 148297 149745 R COG0471 Di- and tricarboxylate transporters; hypothetical protein complement(148297..149745) Helicobacter pylori SouthAfrica7 12350303 YP_005770776.1 CDS HPSA_00725 NC_017361.1 149915 151381 D COG3278 Cbb3-type cytochrome oxidase, subunit 1; cbb3-type cytochrome c oxidase subunit I 149915..151381 Helicobacter pylori SouthAfrica7 12350304 YP_005770777.1 CDS HPSA_00730 NC_017361.1 151393 152091 D COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; cbb3-type cytochrome c oxidase subunit II 151393..152091 Helicobacter pylori SouthAfrica7 12350305 YP_005770778.1 CDS HPSA_00735 NC_017361.1 152102 152320 D cytochrome c oxidase subunit Q 152102..152320 Helicobacter pylori SouthAfrica7 12350306 YP_005770779.1 CDS HPSA_00740 NC_017361.1 152322 153200 D COG2010 Cytochrome c, mono- and diheme variants; cytochrome c oxidase, cbb3-type subunit III 152322..153200 Helicobacter pylori SouthAfrica7 12350307 YP_005770780.1 CDS HPSA_00745 NC_017361.1 153211 153417 D hypothetical protein 153211..153417 Helicobacter pylori SouthAfrica7 12350308 YP_005770781.1 CDS HPSA_00750 NC_017361.1 153414 153521 D hypothetical protein 153414..153521 Helicobacter pylori SouthAfrica7 12350309 YP_005770782.1 CDS HPSA_00755 NC_017361.1 153518 154105 D COG0443 Molecular chaperone; hypothetical protein 153518..154105 Helicobacter pylori SouthAfrica7 12350310 YP_005770783.1 CDS HPSA_00760 NC_017361.1 154117 154698 D hypothetical protein 154117..154698 Helicobacter pylori SouthAfrica7 12350311 YP_005770784.1 CDS HPSA_00765 NC_017361.1 155065 155832 D hypothetical protein 155065..155832 Helicobacter pylori SouthAfrica7 12350312 YP_005770785.1 CDS HPSA_00770 NC_017361.1 155829 156692 R COG2107 Predicted periplasmic solute-binding protein; hypothetical protein complement(155829..156692) Helicobacter pylori SouthAfrica7 12350313 YP_005770786.1 CDS recA NC_017361.1 156792 157835 D COG0468 RecA/RadA recombinase; recombinase A 156792..157835 Helicobacter pylori SouthAfrica7 12350314 YP_005770787.1 CDS eno NC_017361.1 157846 159126 D COG0148 Enolase; phosphopyruvate hydratase 157846..159126 Helicobacter pylori SouthAfrica7 12350315 YP_005770788.1 CDS HPSA_00785 NC_017361.1 159119 159394 D hypothetical protein 159119..159394 Helicobacter pylori SouthAfrica7 12350316 YP_005770789.1 CDS HPSA_00790 NC_017361.1 159411 160007 D hypothetical protein 159411..160007 Helicobacter pylori SouthAfrica7 12350317 YP_005770790.1 CDS aroK NC_017361.1 160012 160500 D COG0703 Shikimate kinase; shikimate kinase 160012..160500 Helicobacter pylori SouthAfrica7 12350318 YP_005770791.1 CDS HPSA_00800 NC_017361.1 160522 161478 D COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 160522..161478 Helicobacter pylori SouthAfrica7 12350319 YP_005770792.1 CDS HPSA_00805 NC_017361.1 161475 162581 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide1, 2-glycosyltransferase complement(161475..162581) Helicobacter pylori SouthAfrica7 12350320 YP_005770793.1 CDS HPSA_00810 NC_017361.1 162734 163648 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 162734..163648 Helicobacter pylori SouthAfrica7 12350321 YP_005770794.1 CDS HPSA_00815 NC_017361.1 164368 164529 D hypothetical protein 164368..164529 Helicobacter pylori SouthAfrica7 12350322 YP_005770795.1 CDS HPSA_00820 NC_017361.1 164702 164842 D cag pathogenicity island protein beta 164702..164842 Helicobacter pylori SouthAfrica7 12350323 YP_005770796.1 CDS HPSA_00825 NC_017361.1 164850 165572 R COG0217 Uncharacterized conserved protein; hypothetical protein complement(164850..165572) Helicobacter pylori SouthAfrica7 12350324 YP_005770797.1 CDS HPSA_00830 NC_017361.1 165573 166544 R COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase complement(165573..166544) Helicobacter pylori SouthAfrica7 12350325 YP_005770798.1 CDS HPSA_00835 NC_017361.1 166615 167898 R COG0642 Signal transduction histidine kinase; putative histidine kinase sensor protein complement(166615..167898) Helicobacter pylori SouthAfrica7 12350326 YP_005770799.1 CDS HPSA_00840 NC_017361.1 167922 168599 R COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator (ompR) complement(167922..168599) Helicobacter pylori SouthAfrica7 12350327 YP_005770800.1 CDS HPSA_00845 NC_017361.1 169269 169742 R hypothetical protein complement(169269..169742) Helicobacter pylori SouthAfrica7 12350328 YP_005770801.1 CDS HPSA_00850 NC_017361.1 169733 169996 R COG0457 FOG: TPR repeat; hypothetical protein complement(169733..169996) Helicobacter pylori SouthAfrica7 12350329 YP_005770802.1 CDS HPSA_00855 NC_017361.1 170015 171280 R COG0826 Collagenase and related proteases; collagenase complement(170015..171280) Helicobacter pylori SouthAfrica7 12350330 YP_005770803.1 CDS HPSA_00860 NC_017361.1 171283 172020 R hypothetical protein complement(171283..172020) Helicobacter pylori SouthAfrica7 12350331 YP_005770804.1 CDS prfB NC_017361.1 172090 173181 R COG1186 Protein chain release factor B; peptide chain release factor 2 complement(172090..173181) Helicobacter pylori SouthAfrica7 12350332 YP_005770805.1 CDS HPSA_00870 NC_017361.1 173242 174417 R COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein complement(173242..174417) Helicobacter pylori SouthAfrica7 12350333 YP_005770806.1 CDS fliR NC_017361.1 174427 175194 R COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR complement(174427..175194) Helicobacter pylori SouthAfrica7 12350334 YP_005770807.1 CDS HPSA_00880 NC_017361.1 175169 175906 R hypothetical protein complement(175169..175906) Helicobacter pylori SouthAfrica7 12350335 YP_005770808.1 CDS HPSA_00885 NC_017361.1 176029 176247 R hypothetical protein complement(176029..176247) Helicobacter pylori SouthAfrica7 12350336 YP_005770809.1 CDS HPSA_00890 NC_017361.1 176367 177266 D COG0760 Parvulin-like peptidyl-prolyl isomerase; putative peptidyl-prolyl cis-trans isomerase 176367..177266 Helicobacter pylori SouthAfrica7 12350337 YP_005770810.1 CDS HPSA_00895 NC_017361.1 177279 178202 D COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 177279..178202 Helicobacter pylori SouthAfrica7 12350338 YP_005770811.1 CDS HPSA_00900 NC_017361.1 178224 178787 D COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 178224..178787 Helicobacter pylori SouthAfrica7 12350339 YP_005770812.1 CDS HPSA_00905 NC_017361.1 179176 180198 R COG2089 Sialic acid synthase; sialic acid synthase complement(179176..180198) Helicobacter pylori SouthAfrica7 12350340 YP_005770813.1 CDS HPSA_00910 NC_017361.1 180201 180842 R COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein complement(180201..180842) Helicobacter pylori SouthAfrica7 12350341 YP_005770814.1 CDS HPSA_00915 NC_017361.1 180839 182116 R COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase complement(180839..182116) Helicobacter pylori SouthAfrica7 12350342 YP_005770815.1 CDS HPSA_00920 NC_017361.1 182335 183042 D COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 182335..183042 Helicobacter pylori SouthAfrica7 12350343 YP_005770816.1 CDS lysS NC_017361.1 183052 184557 D COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase 183052..184557 Helicobacter pylori SouthAfrica7 12350344 YP_005770817.1 CDS HPSA_00930 NC_017361.1 184557 185807 D COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase 184557..185807 Helicobacter pylori SouthAfrica7 12350345 YP_005770818.1 CDS HPSA_00935 NC_017361.1 185819 186361 D hypothetical protein 185819..186361 Helicobacter pylori SouthAfrica7 12350346 YP_005770819.1 CDS HPSA_00940 NC_017361.1 186383 187195 D hypothetical protein 186383..187195 Helicobacter pylori SouthAfrica7 12350347 YP_005770820.1 CDS HPSA_00945 NC_017361.1 187363 188016 D COG0162 Tyrosyl-tRNA synthetase; hypothetical protein 187363..188016 Helicobacter pylori SouthAfrica7 12350348 YP_005770821.1 CDS HPSA_00950 NC_017361.1 188603 189136 D COG2862 Predicted membrane protein; hypothetical protein 188603..189136 Helicobacter pylori SouthAfrica7 12350349 YP_005770822.1 CDS HPSA_00955 NC_017361.1 189143 190651 R COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; putative cardiolipin synthase complement(189143..190651) Helicobacter pylori SouthAfrica7 12350350 YP_005770823.1 CDS frdB NC_017361.1 190672 191409 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit complement(190672..191409) Helicobacter pylori SouthAfrica7 12350351 YP_005770824.1 CDS HPSA_00965 NC_017361.1 191402 193546 R COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit complement(191402..193546) Helicobacter pylori SouthAfrica7 12350352 YP_005770825.1 CDS HPSA_00970 NC_017361.1 193556 194323 R COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; fumarate reductase cytochrome b-556 subunit complement(193556..194323) Helicobacter pylori SouthAfrica7 12350353 YP_005770826.1 CDS tpiA NC_017361.1 194539 195243 D COG0149 Triosephosphate isomerase; triosephosphate isomerase 194539..195243 Helicobacter pylori SouthAfrica7 12350354 YP_005770827.1 CDS HPSA_00980 NC_017361.1 195253 196080 D COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-ACP reductase 195253..196080 Helicobacter pylori SouthAfrica7 12350355 YP_005770828.1 CDS lpxD NC_017361.1 196091 197101 D COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 196091..197101 Helicobacter pylori SouthAfrica7 12350356 YP_005770829.1 CDS HPSA_00990 NC_017361.1 197165 198322 D COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 197165..198322 Helicobacter pylori SouthAfrica7 12350357 YP_005770830.1 CDS ndk NC_017361.1 198389 198802 D COG0105 Nucleoside diphosphate kinase; nucleoside diphosphate kinase 198389..198802 Helicobacter pylori SouthAfrica7 12350358 YP_005770831.1 CDS HPSA_01000 NC_017361.1 198827 199183 D hypothetical protein 198827..199183 Helicobacter pylori SouthAfrica7 12350359 YP_005770832.1 CDS rpmF NC_017361.1 199206 199352 D COG0333 Ribosomal protein L32; 50S ribosomal protein L32 199206..199352 Helicobacter pylori SouthAfrica7 12350360 YP_005770833.1 CDS HPSA_01010 NC_017361.1 199438 200457 D COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 199438..200457 Helicobacter pylori SouthAfrica7 12350361 YP_005770834.1 CDS HPSA_01015 NC_017361.1 200482 201474 D COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-ACP synthase 200482..201474 Helicobacter pylori SouthAfrica7 12350362 YP_005770835.1 CDS HPSA_01020 NC_017361.1 201495 201797 D hypothetical protein 201495..201797 Helicobacter pylori SouthAfrica7 12350363 YP_005770836.1 CDS HPSA_01025 NC_017361.1 202465 202848 R hypothetical protein complement(202465..202848) Helicobacter pylori SouthAfrica7 12350364 YP_005770837.1 CDS HPSA_01030 NC_017361.1 202926 206063 R COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein complement(202926..206063) Helicobacter pylori SouthAfrica7 12350365 YP_005770838.1 CDS HPSA_01035 NC_017361.1 206206 207312 D COG0489 ATPases involved in chromosome partitioning; ATP-binding protein 206206..207312 Helicobacter pylori SouthAfrica7 12350366 YP_005770839.1 CDS HPSA_01040 NC_017361.1 207364 208404 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; LPS 1,2-glycosyltransferase complement(207364..208404) Helicobacter pylori SouthAfrica7 12350367 YP_005770840.1 CDS HPSA_01045 NC_017361.1 208418 208558 R lipopolysaccharide biosynthesis protein complement(208418..208558) Helicobacter pylori SouthAfrica7 12350368 YP_005770841.1 CDS HPSA_01050 NC_017361.1 208705 210057 D outer membrane protein 208705..210057 Helicobacter pylori SouthAfrica7 12350369 YP_005770842.1 CDS HPSA_01055 NC_017361.1 210160 212025 D COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 210160..212025 Helicobacter pylori SouthAfrica7 12350370 YP_005770843.1 CDS HPSA_01060 NC_017361.1 212195 212947 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(212195..212947) Helicobacter pylori SouthAfrica7 12350371 YP_005770844.1 CDS HPSA_01065 NC_017361.1 213388 214554 R COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase complement(213388..214554) Helicobacter pylori SouthAfrica7 12350372 YP_005770845.1 CDS HPSA_01070 NC_017361.1 214565 216430 R COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(214565..216430) Helicobacter pylori SouthAfrica7 12350373 YP_005770846.1 CDS HPSA_01075 NC_017361.1 216526 218172 D COG0471 Di- and tricarboxylate transporters; putative transporter 216526..218172 Helicobacter pylori SouthAfrica7 12350374 YP_005770847.1 CDS HPSA_01080 NC_017361.1 218185 218985 D COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 218185..218985 Helicobacter pylori SouthAfrica7 12350375 YP_005770848.1 CDS HPSA_01085 NC_017361.1 218986 220077 D COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 218986..220077 Helicobacter pylori SouthAfrica7 12350376 YP_005770849.1 CDS HPSA_01090 NC_017361.1 220143 220454 D hypothetical protein 220143..220454 Helicobacter pylori SouthAfrica7 12350377 YP_005770850.1 CDS HPSA_01095 NC_017361.1 220522 220617 R hypothetical protein complement(220522..220617) Helicobacter pylori SouthAfrica7 12350378 YP_005770851.1 CDS HPSA_01100 NC_017361.1 220616 221290 D hypothetical protein 220616..221290 Helicobacter pylori SouthAfrica7 12350379 YP_005770852.1 CDS HPSA_01105 NC_017361.1 221353 221904 R COG1881 Phospholipid-binding protein; hypothetical protein complement(221353..221904) Helicobacter pylori SouthAfrica7 12350380 YP_005770853.1 CDS HPSA_01110 NC_017361.1 222049 222513 D hypothetical protein 222049..222513 Helicobacter pylori SouthAfrica7 12350381 YP_005770854.1 CDS HPSA_01115 NC_017361.1 222681 223844 D COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase 222681..223844 Helicobacter pylori SouthAfrica7 12350382 YP_005770855.1 CDS HPSA_01120 NC_017361.1 223866 224846 D COG0822 NifU homolog involved in Fe-S cluster formation; nifU-like protein 223866..224846 Helicobacter pylori SouthAfrica7 12350383 YP_005770856.1 CDS HPSA_01125 NC_017361.1 225005 225238 D hypothetical protein 225005..225238 Helicobacter pylori SouthAfrica7 12350384 YP_005770857.1 CDS HPSA_01130 NC_017361.1 225341 226687 D COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 225341..226687 Helicobacter pylori SouthAfrica7 12350385 YP_005770858.1 CDS HPSA_01135 NC_017361.1 226959 228038 D COG0225 Peptide methionine sulfoxide reductase; bifunctional methionine sulfoxide reductase A/B 226959..228038 Helicobacter pylori SouthAfrica7 12350386 YP_005770859.1 CDS HPSA_01140 NC_017361.1 228035 228130 R hypothetical protein complement(228035..228130) Helicobacter pylori SouthAfrica7 12350387 YP_005770860.1 CDS HPSA_01145 NC_017361.1 228723 229556 R COG0730 Predicted permeases; hypothetical protein complement(228723..229556) Helicobacter pylori SouthAfrica7 12350388 YP_005770861.1 CDS HPSA_01150 NC_017361.1 229773 231854 R outer membrane protein complement(229773..231854) Helicobacter pylori SouthAfrica7 12350389 YP_005770862.1 CDS HPSA_01155 NC_017361.1 232109 233266 D COG0659 Sulfate permease and related transporters (MFS superfamily); putative sulfate permease 232109..233266 Helicobacter pylori SouthAfrica7 12350390 YP_005770863.1 CDS HPSA_01160 NC_017361.1 233504 234955 R outer membrane protein (omp6) complement(233504..234955) Helicobacter pylori SouthAfrica7 12350392 YP_005770864.1 CDS HPSA_01165 NC_017361.1 235148 235879 R COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase complement(235148..235879) Helicobacter pylori SouthAfrica7 12350393 YP_005770865.1 CDS HPSA_01170 NC_017361.1 235985 236776 D COG1651 Protein-disulfide isomerase; hypothetical protein 235985..236776 Helicobacter pylori SouthAfrica7 12350394 YP_005770866.1 CDS HPSA_01175 NC_017361.1 236792 237442 D hypothetical protein 236792..237442 Helicobacter pylori SouthAfrica7 12350395 YP_005770867.1 CDS HPSA_01180 NC_017361.1 237467 238639 D COG0754 Glutathionylspermidine synthase; hypothetical protein 237467..238639 Helicobacter pylori SouthAfrica7 12350396 YP_005770868.1 CDS HPSA_01185 NC_017361.1 238636 239157 D integral membrane protein 238636..239157 Helicobacter pylori SouthAfrica7 12350397 YP_005770869.1 CDS HPSA_01190 NC_017361.1 239672 239785 R hypothetical protein complement(239672..239785) Helicobacter pylori SouthAfrica7 12350398 YP_005770870.1 CDS HPSA_01195 NC_017361.1 239782 240849 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(239782..240849) Helicobacter pylori SouthAfrica7 12350399 YP_005770871.1 CDS HPSA_01200 NC_017361.1 240960 241328 R hypothetical protein complement(240960..241328) Helicobacter pylori SouthAfrica7 12350400 YP_005770872.1 CDS hemC NC_017361.1 241328 242248 R COG0181 Porphobilinogen deaminase; porphobilinogen deaminase complement(241328..242248) Helicobacter pylori SouthAfrica7 12350401 YP_005770873.1 CDS HPSA_01210 NC_017361.1 242258 243991 R COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase complement(242258..243991) Helicobacter pylori SouthAfrica7 12350402 YP_005770874.1 CDS hemA NC_017361.1 243995 245338 R COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase complement(243995..245338) Helicobacter pylori SouthAfrica7 12350403 YP_005770875.1 CDS HPSA_01220 NC_017361.1 245338 246261 R COG0142 Geranylgeranyl pyrophosphate synthase; putative octaprenyl-diphosphate synthase complement(245338..246261) Helicobacter pylori SouthAfrica7 12350404 YP_005770876.1 CDS HPSA_01225 NC_017361.1 246270 246665 R hypothetical protein complement(246270..246665) Helicobacter pylori SouthAfrica7 12350405 YP_005770877.1 CDS HPSA_01230 NC_017361.1 246658 246942 R hypothetical protein complement(246658..246942) Helicobacter pylori SouthAfrica7 12350406 YP_005770878.1 CDS HPSA_01235 NC_017361.1 246963 247397 R COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); neutrophil activating protein complement(246963..247397) Helicobacter pylori SouthAfrica7 12350407 YP_005770879.1 CDS HPSA_01240 NC_017361.1 247619 248764 R COG0642 Signal transduction histidine kinase; putative histidine kinase sensor protein complement(247619..248764) Helicobacter pylori SouthAfrica7 12350408 YP_005770880.1 CDS HPSA_01245 NC_017361.1 248761 249078 R hypothetical protein complement(248761..249078) Helicobacter pylori SouthAfrica7 12350409 YP_005770881.1 CDS flgI NC_017361.1 249075 250100 R COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein complement(249075..250100) Helicobacter pylori SouthAfrica7 12350410 YP_005770882.1 CDS HPSA_01255 NC_017361.1 250270 251754 D COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 250270..251754 Helicobacter pylori SouthAfrica7 12350411 YP_005770883.1 CDS HPSA_01260 NC_017361.1 251775 252869 D COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 251775..252869 Helicobacter pylori SouthAfrica7 12350412 YP_005770884.1 CDS HPSA_01265 NC_017361.1 252876 253415 D hypothetical protein 252876..253415 Helicobacter pylori SouthAfrica7 12350413 YP_005770885.1 CDS HPSA_01270 NC_017361.1 253690 255240 R COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; oligopeptide permease ATPase protein complement(253690..255240) Helicobacter pylori SouthAfrica7 12350414 YP_005770886.1 CDS HPSA_01275 NC_017361.1 255250 256266 R COG4239 ABC-type uncharacterized transport system, permease component; oligopeptide permease integral membrane protein complement(255250..256266) Helicobacter pylori SouthAfrica7 12350415 YP_005770887.1 CDS HPSA_01280 NC_017361.1 256725 258179 D Outer membrane protein HopF; putative signal peptide 256725..258179 Helicobacter pylori SouthAfrica7 12350417 YP_005770888.1 CDS HPSA_01285 NC_017361.1 258192 259613 D outer membrane protein HopG 258192..259613 Helicobacter pylori SouthAfrica7 12350418 YP_005770889.1 CDS HPSA_01290 NC_017361.1 259720 260955 D COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 259720..260955 Helicobacter pylori SouthAfrica7 12350419 YP_005770890.1 CDS HPSA_01295 NC_017361.1 260952 261329 D hypothetical protein 260952..261329 Helicobacter pylori SouthAfrica7 12350420 YP_005770891.1 CDS HPSA_01300 NC_017361.1 261372 262046 D COG3334 Uncharacterized conserved protein; hypothetical protein 261372..262046 Helicobacter pylori SouthAfrica7 12350421 YP_005770892.1 CDS HPSA_01305 NC_017361.1 262046 263113 D COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metalloprotease 262046..263113 Helicobacter pylori SouthAfrica7 12350422 YP_005770893.1 CDS xseA NC_017361.1 263126 264388 D COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 263126..264388 Helicobacter pylori SouthAfrica7 12350423 YP_005770894.1 CDS HPSA_01315 NC_017361.1 264421 265584 R COG2189 Adenine specific DNA methylase Mod; TCGA site-specific m6A methyltransferase complement(264421..265584) Helicobacter pylori SouthAfrica7 12350424 YP_005770895.1 CDS HPSA_01320 NC_017361.1 265577 266191 R hypothetical protein complement(265577..266191) Helicobacter pylori SouthAfrica7 12350425 YP_005770896.1 CDS HPSA_01325 NC_017361.1 266305 266820 D hypothetical protein 266305..266820 Helicobacter pylori SouthAfrica7 12350426 YP_005770897.1 CDS HPSA_01330 NC_017361.1 266828 266908 D endonuclease MjaVIP 266828..266908 Helicobacter pylori SouthAfrica7 12350427 YP_005770898.1 CDS HPSA_01335 NC_017361.1 266998 267756 D COG0863 DNA modification methylase; type II DNA modification enzyme 266998..267756 Helicobacter pylori SouthAfrica7 12350428 YP_005770899.1 CDS HPSA_01340 NC_017361.1 267830 270400 D COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease, ATP-binding subunit ClpB 267830..270400 Helicobacter pylori SouthAfrica7 12350429 YP_005770900.1 CDS HPSA_01345 NC_017361.1 270455 271174 D COG0785 Cytochrome c biogenesis protein; cytochrome c biogenesis protein 270455..271174 Helicobacter pylori SouthAfrica7 12350430 YP_005770901.1 CDS HPSA_01350 NC_017361.1 271184 272317 D COG0044 Dihydroorotase and related cyclic amidohydrolases; dihydroorotase 271184..272317 Helicobacter pylori SouthAfrica7 12350431 YP_005770902.1 CDS HPSA_01355 NC_017361.1 272305 273531 D COG0402 Cytosine deaminase and related metal-dependent hydrolases; chlorohydrolase 272305..273531 Helicobacter pylori SouthAfrica7 12350432 YP_005770903.1 CDS HPSA_01360 NC_017361.1 273786 274028 D hypothetical protein 273786..274028 Helicobacter pylori SouthAfrica7 12350433 YP_005770904.1 CDS HPSA_01365 NC_017361.1 274038 275354 D COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 274038..275354 Helicobacter pylori SouthAfrica7 12350434 YP_005770905.1 CDS HPSA_01370 NC_017361.1 275389 276036 D COG2121 Uncharacterized protein conserved in bacteria; hypothetical protein 275389..276036 Helicobacter pylori SouthAfrica7 12350435 YP_005770906.1 CDS HPSA_01375 NC_017361.1 276029 277012 D hypothetical protein 276029..277012 Helicobacter pylori SouthAfrica7 12350436 YP_005770907.1 CDS HPSA_01380 NC_017361.1 277002 277535 D hypothetical protein 277002..277535 Helicobacter pylori SouthAfrica7 12350437 YP_005770908.1 CDS HPSA_01385 NC_017361.1 277532 278071 D hypothetical protein 277532..278071 Helicobacter pylori SouthAfrica7 12350438 YP_005770909.1 CDS HPSA_01390 NC_017361.1 278088 278486 D COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 278088..278486 Helicobacter pylori SouthAfrica7 12350439 YP_005770910.1 CDS HPSA_01395 NC_017361.1 278523 279818 D COG0457 FOG: TPR repeat; ATP-dependent nuclease 278523..279818 Helicobacter pylori SouthAfrica7 12350440 YP_005770911.1 CDS HPSA_01400 NC_017361.1 279806 280363 D COG0134 Indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase 279806..280363 Helicobacter pylori SouthAfrica7 12350441 YP_005770912.1 CDS HPSA_01405 NC_017361.1 280419 280670 D COG1145 Ferredoxin; ferrodoxin 280419..280670 Helicobacter pylori SouthAfrica7 12350442 YP_005770913.1 CDS HPSA_01410 NC_017361.1 280683 282137 D COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase 280683..282137 Helicobacter pylori SouthAfrica7 12350443 YP_005770914.1 CDS HPSA_01415 NC_017361.1 282134 283144 D COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide heptosyltransferase-1 282134..283144 Helicobacter pylori SouthAfrica7 12350444 YP_005770915.1 CDS HPSA_01420 NC_017361.1 283141 284127 D COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 283141..284127 Helicobacter pylori SouthAfrica7 12350445 YP_005770916.1 CDS tgt NC_017361.1 284388 285503 R COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(284388..285503) Helicobacter pylori SouthAfrica7 12350446 YP_005770917.1 CDS HPSA_01430 NC_017361.1 285560 286996 D COG3400 Uncharacterized protein conserved in bacteria; hypothetical protein 285560..286996 Helicobacter pylori SouthAfrica7 12350447 YP_005770918.1 CDS aroB NC_017361.1 287001 288032 D COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase 287001..288032 Helicobacter pylori SouthAfrica7 12350448 YP_005770919.1 CDS HPSA_01440 NC_017361.1 288023 289606 D COG0668 Small-conductance mechanosensitive channel; hypothetical protein 288023..289606 Helicobacter pylori SouthAfrica7 12350449 YP_005770920.1 CDS HPSA_01445 NC_017361.1 289603 290859 D COG0621 2-methylthioadenine synthetase; hypothetical protein 289603..290859 Helicobacter pylori SouthAfrica7 12350450 YP_005770921.1 CDS HPSA_01450 NC_017361.1 290846 292498 D COG0465 ATP-dependent Zn proteases; cell division protein FtsH3 290846..292498 Helicobacter pylori SouthAfrica7 12350451 YP_005770922.1 CDS HPSA_01455 NC_017361.1 292501 293019 D hypothetical protein 292501..293019 Helicobacter pylori SouthAfrica7 12350452 YP_005770923.1 CDS HPSA_01460 NC_017361.1 293032 293505 D hypothetical protein 293032..293505 Helicobacter pylori SouthAfrica7 12350453 YP_005770924.1 CDS HPSA_01465 NC_017361.1 293557 302256 D toxin-like outer membrane protein 293557..302256 Helicobacter pylori SouthAfrica7 12350454 YP_005770925.1 CDS HPSA_01470 NC_017361.1 302304 303521 D COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 302304..303521 Helicobacter pylori SouthAfrica7 12350455 YP_005770926.1 CDS HPSA_01475 NC_017361.1 303526 303816 D COG1605 Chorismate mutase; hypothetical protein 303526..303816 Helicobacter pylori SouthAfrica7 12350456 YP_005770927.1 CDS HPSA_01490 NC_017361.1 304701 306386 D COG0147 Anthranilate/para-aminobenzoate synthases component I; para-aminobenzoate synthetase component I 304701..306386 Helicobacter pylori SouthAfrica7 12350457 YP_005770928.1 CDS amiE NC_017361.1 306573 307592 D COG0388 Predicted amidohydrolase; acylamide amidohydrolase 306573..307592 Helicobacter pylori SouthAfrica7 12350458 YP_005770929.1 CDS flgL NC_017361.1 307716 310199 R COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL complement(307716..310199) Helicobacter pylori SouthAfrica7 12350459 YP_005770930.1 CDS HPSA_01505 NC_017361.1 310262 310363 D hypothetical protein 310262..310363 Helicobacter pylori SouthAfrica7 12350460 YP_005770931.1 CDS rplU NC_017361.1 310444 310758 D COG0261 Ribosomal protein L21; 50S ribosomal protein L21 310444..310758 Helicobacter pylori SouthAfrica7 12350461 YP_005770932.1 CDS rpmA NC_017361.1 310772 311038 D COG0211 Ribosomal protein L27; 50S ribosomal protein L27 310772..311038 Helicobacter pylori SouthAfrica7 12350462 YP_005770933.1 CDS HPSA_01520 NC_017361.1 311156 312805 D COG0747 ABC-type dipeptide transport system, periplasmic component; periplasmic dipeptide-binding protein 311156..312805 Helicobacter pylori SouthAfrica7 12350463 YP_005770934.1 CDS HPSA_01525 NC_017361.1 312816 313820 D COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide permease protein 312816..313820 Helicobacter pylori SouthAfrica7 12350464 YP_005770935.1 CDS HPSA_01530 NC_017361.1 313820 314677 D COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transport system permease 313820..314677 Helicobacter pylori SouthAfrica7 12350465 YP_005770936.1 CDS HPSA_01535 NC_017361.1 314688 315551 D COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ABC-type transport system, ATP-binding protein; putative dipeptide transporter protein 4 314688..315551 Helicobacter pylori SouthAfrica7 12350466 YP_005770937.1 CDS HPSA_01540 NC_017361.1 315548 316354 D COG4608 ABC-type oligopeptide transport system, ATPase component; dipeptide transport system ATP-binding protein 315548..316354 Helicobacter pylori SouthAfrica7 12350467 YP_005770938.1 CDS obgE NC_017361.1 316373 317455 D COG0536 Predicted GTPase; GTPase ObgE 316373..317455 Helicobacter pylori SouthAfrica7 12350468 YP_005770939.1 CDS HPSA_01550 NC_017361.1 317620 318603 D hypothetical protein 317620..318603 Helicobacter pylori SouthAfrica7 12350469 YP_005770940.1 CDS HPSA_01555 NC_017361.1 318886 319440 D hypothetical protein 318886..319440 Helicobacter pylori SouthAfrica7 12350470 YP_005770941.1 CDS HPSA_01560 NC_017361.1 319449 320741 D COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase 319449..320741 Helicobacter pylori SouthAfrica7 12350471 YP_005770942.1 CDS HPSA_01565 NC_017361.1 320746 321006 D hypothetical protein 320746..321006 Helicobacter pylori SouthAfrica7 12350472 YP_005770943.1 CDS HPSA_01570 NC_017361.1 321019 321411 D hypothetical protein 321019..321411 Helicobacter pylori SouthAfrica7 12350473 YP_005770944.1 CDS HPSA_01575 NC_017361.1 321520 322404 D COG0388 Predicted amidohydrolase; N-carbamoyl-D-amino acid amidohydrolase 321520..322404 Helicobacter pylori SouthAfrica7 12350474 YP_005770945.1 CDS HPSA_01580 NC_017361.1 322417 323298 D COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 322417..323298 Helicobacter pylori SouthAfrica7 12350475 YP_005770946.1 CDS HPSA_01585 NC_017361.1 323345 323698 D hypothetical protein 323345..323698 Helicobacter pylori SouthAfrica7 12350476 YP_005770947.1 CDS HPSA_01590 NC_017361.1 323698 324675 D COG0523 Putative GTPases (G3E family); putative cobalamin synthesis protein 323698..324675 Helicobacter pylori SouthAfrica7 12350477 YP_005770948.1 CDS HPSA_01595 NC_017361.1 324834 325979 R COG0477 Permeases of the major facilitator superfamily; nitrite extrusion protein (narK) complement(324834..325979) Helicobacter pylori SouthAfrica7 12350478 YP_005770949.1 CDS HPSA_01600 NC_017361.1 326362 326463 D hypothetical protein 326362..326463 Helicobacter pylori SouthAfrica7 12350479 YP_005770950.1 CDS HPSA_01605 NC_017361.1 327060 329123 R outer membrane protein HopD complement(327060..329123) Helicobacter pylori SouthAfrica7 12350480 YP_005770951.1 CDS HPSA_01610 NC_017361.1 329526 329663 D hypothetical protein 329526..329663 Helicobacter pylori SouthAfrica7 12350481 YP_005770952.1 CDS HPSA_01615 NC_017361.1 329805 330560 R COG0748 Putative heme iron utilization protein; putative heme iron utilization protein complement(329805..330560) Helicobacter pylori SouthAfrica7 12350482 YP_005770953.1 CDS argS NC_017361.1 330621 332246 R COG0018 Arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(330621..332246) Helicobacter pylori SouthAfrica7 12350483 YP_005770954.1 CDS HPSA_01625 NC_017361.1 332249 332494 R COG1826 Sec-independent protein secretion pathway components; Sec-independent protein translocase protein tatA/E-like protein complement(332249..332494) Helicobacter pylori SouthAfrica7 12350484 YP_005770955.1 CDS gmk NC_017361.1 332565 333185 R COG0194 Guanylate kinase; guanylate kinase complement(332565..333185) Helicobacter pylori SouthAfrica7 12350485 YP_005770956.1 CDS HPSA_01635 NC_017361.1 333178 334617 R hypothetical protein complement(333178..334617) Helicobacter pylori SouthAfrica7 12350486 YP_005770957.1 CDS HPSA_01640 NC_017361.1 334760 335302 D COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; nuclease NucT 334760..335302 Helicobacter pylori SouthAfrica7 12350487 YP_005770958.1 CDS HPSA_01645 NC_017361.1 335356 336093 R Outer membrane protein HorC; putative signal peptide complement(335356..336093) Helicobacter pylori SouthAfrica7 12350488 YP_005770959.1 CDS flgH NC_017361.1 336224 336937 D COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 336224..336937 Helicobacter pylori SouthAfrica7 12350489 YP_005770960.1 CDS HPSA_01655 NC_017361.1 336958 337647 D COG1083 CMP-N-acetylneuraminic acid synthetase; CMP-N-acetylneuraminic acid synthetase 336958..337647 Helicobacter pylori SouthAfrica7 12350490 YP_005770961.1 CDS HPSA_01660 NC_017361.1 337638 338504 D COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase; CMP-N-acetylneuraminic acid synthetase protein 2 337638..338504 Helicobacter pylori SouthAfrica7 12350491 YP_005770962.1 CDS HPSA_01665 NC_017361.1 338501 339043 D COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; putative flagellar biosynthesis protein 338501..339043 Helicobacter pylori SouthAfrica7 12350492 YP_005770963.1 CDS lpxK NC_017361.1 338976 339914 R COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(338976..339914) Helicobacter pylori SouthAfrica7 12350493 YP_005770964.1 CDS HPSA_01675 NC_017361.1 339911 340693 R COG0171 NAD synthase; NAD synthetase complement(339911..340693) Helicobacter pylori SouthAfrica7 12350494 YP_005770965.1 CDS HPSA_01685 NC_017361.1 340950 341942 D COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 340950..341942 Helicobacter pylori SouthAfrica7 12350496 YP_005770966.1 CDS HPSA_01690 NC_017361.1 341965 342771 D COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor 341965..342771 Helicobacter pylori SouthAfrica7 12350497 YP_005770967.1 CDS minE NC_017361.1 342768 343001 D COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 342768..343001 Helicobacter pylori SouthAfrica7 12350498 YP_005770968.1 CDS HPSA_01700 NC_017361.1 343008 343808 D COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA processing protein DprA 343008..343808 Helicobacter pylori SouthAfrica7 12350499 YP_005770969.1 CDS HPSA_01705 NC_017361.1 343954 344208 D COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 343954..344208 Helicobacter pylori SouthAfrica7 12350500 YP_005770970.1 CDS HPSA_01710 NC_017361.1 344514 345122 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 344514..345122 Helicobacter pylori SouthAfrica7 12350501 YP_005770971.1 CDS HPSA_01715 NC_017361.1 345237 345575 D hypothetical protein 345237..345575 Helicobacter pylori SouthAfrica7 12350502 YP_005770972.1 CDS HPSA_01720 NC_017361.1 345559 346119 D hypothetical protein 345559..346119 Helicobacter pylori SouthAfrica7 12350503 YP_005770973.1 CDS HPSA_01725 NC_017361.1 346205 347086 R COG0564 Pseudouridylate synthases, 23S RNA-specific; putative ribosomal pseudouridine synthase complement(346205..347086) Helicobacter pylori SouthAfrica7 12350504 YP_005770974.1 CDS HPSA_01730 NC_017361.1 347086 348636 R COG0608 Single-stranded DNA-specific exonuclease; ssDNA-specific exonuclease RecJ complement(347086..348636) Helicobacter pylori SouthAfrica7 12350505 YP_005770975.1 CDS pyrG NC_017361.1 348640 350256 R COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase complement(348640..350256) Helicobacter pylori SouthAfrica7 12350506 YP_005770976.1 CDS HPSA_01740 NC_017361.1 350514 351188 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 350514..351188 Helicobacter pylori SouthAfrica7 12350507 YP_005770977.1 CDS fliF NC_017361.1 351234 352937 D COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 351234..352937 Helicobacter pylori SouthAfrica7 12350508 YP_005770978.1 CDS fliG NC_017361.1 352956 353987 D COG1536 Flagellar motor switch protein; flagellar motor switch protein G 352956..353987 Helicobacter pylori SouthAfrica7 12350509 YP_005770979.1 CDS fliH NC_017361.1 353980 354750 D COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 353980..354750 Helicobacter pylori SouthAfrica7 12350510 YP_005770980.1 CDS HPSA_01760 NC_017361.1 354753 356603 D COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 354753..356603 Helicobacter pylori SouthAfrica7 12350511 YP_005770981.1 CDS HPSA_01765 NC_017361.1 356600 358414 D COG0481 Membrane GTPase LepA; GTP-binding protein LepA 356600..358414 Helicobacter pylori SouthAfrica7 12350512 YP_005770982.1 CDS HPSA_01770 NC_017361.1 358429 359187 D COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; hypothetical protein 358429..359187 Helicobacter pylori SouthAfrica7 12350513 YP_005770983.1 CDS HPSA_01775 NC_017361.1 359286 359432 D hypothetical protein 359286..359432 Helicobacter pylori SouthAfrica7 12350514 YP_005770984.1 CDS HPSA_01780 NC_017361.1 359458 359592 R hypothetical protein complement(359458..359592) Helicobacter pylori SouthAfrica7 12350515 YP_005770985.1 CDS HPSA_01785 NC_017361.1 359629 359763 D hypothetical protein 359629..359763 Helicobacter pylori SouthAfrica7 12350516 YP_005770986.1 CDS HPSA_01790 NC_017361.1 360220 361029 R COG4786 Flagellar basal body rod protein; flagellar basal-body rod protein complement(360220..361029) Helicobacter pylori SouthAfrica7 12350517 YP_005770987.1 CDS HPSA_01795 NC_017361.1 361083 362363 R COG0477 Permeases of the major facilitator superfamily; General substrate transporter, MFS superfamily; putative alpha-ketoglutarate permease; putative membrane protein complement(361083..362363) Helicobacter pylori SouthAfrica7 12350518 YP_005770988.1 CDS HPSA_01800 NC_017361.1 362562 364304 R COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; 2',3'-cyclic-nucleotide 2'-phosphodiesterase complement(362562..364304) Helicobacter pylori SouthAfrica7 12350519 YP_005770989.1 CDS HPSA_01805 NC_017361.1 364458 367055 R COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; septum formation protein complement(364458..367055) Helicobacter pylori SouthAfrica7 12350520 YP_005770990.1 CDS HPSA_01810 NC_017361.1 367052 369388 R COG3893 Inactivated superfamily I helicase; hypothetical protein complement(367052..369388) Helicobacter pylori SouthAfrica7 12350521 YP_005770991.1 CDS HPSA_01815 NC_017361.1 369379 371310 R COG0021 Transketolase; transketolase complement(369379..371310) Helicobacter pylori SouthAfrica7 12350522 YP_005770992.1 CDS HPSA_01820 NC_017361.1 371357 372199 R COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase complement(371357..372199) Helicobacter pylori SouthAfrica7 12350523 YP_005770993.1 CDS HPSA_01825 NC_017361.1 372165 372872 R COG1189 Predicted rRNA methylase; hemolysin complement(372165..372872) Helicobacter pylori SouthAfrica7 12350524 YP_005770994.1 CDS HPSA_01830 NC_017361.1 372872 373387 R hypothetical protein complement(372872..373387) Helicobacter pylori SouthAfrica7 12350525 YP_005770995.1 CDS pyrB NC_017361.1 373454 374377 D COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit 373454..374377 Helicobacter pylori SouthAfrica7 12350526 YP_005770996.1 CDS HPSA_01840 NC_017361.1 374882 376321 D outer membrane protein HofB 374882..376321 Helicobacter pylori SouthAfrica7 12350527 YP_005770997.1 CDS HPSA_01845 NC_017361.1 376412 378067 D COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein (msbA) 376412..378067 Helicobacter pylori SouthAfrica7 12350528 YP_005770998.1 CDS HPSA_01850 NC_017361.1 378061 378678 D hypothetical protein 378061..378678 Helicobacter pylori SouthAfrica7 12350529 YP_005770999.1 CDS HPSA_01855 NC_017361.1 378682 379251 D COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes; Holliday junction resolvase and Mrr protein 378682..379251 Helicobacter pylori SouthAfrica7 12350530 YP_005771000.1 CDS HPSA_01870 NC_017361.1 380510 381196 D hypothetical protein 380510..381196 Helicobacter pylori SouthAfrica7 12350531 YP_005771001.1 CDS HPSA_01875 NC_017361.1 381270 382265 D COG3376 High-affinity nickel permease; high affinity nickel transport protein 381270..382265 Helicobacter pylori SouthAfrica7 12350532 YP_005771002.1 CDS HPSA_01880 NC_017361.1 382270 382791 R hypothetical protein complement(382270..382791) Helicobacter pylori SouthAfrica7 12350533 YP_005771003.1 CDS HPSA_01885 NC_017361.1 382927 384243 D hypothetical protein 382927..384243 Helicobacter pylori SouthAfrica7 12350534 YP_005771004.1 CDS HPSA_01890 NC_017361.1 384266 385078 R hypothetical protein complement(384266..385078) Helicobacter pylori SouthAfrica7 12350535 YP_005771005.1 CDS HPSA_01895 NC_017361.1 385253 385453 R COG2608 Copper chaperone; copper ion binding protein complement(385253..385453) Helicobacter pylori SouthAfrica7 12350536 YP_005771006.1 CDS HPSA_01900 NC_017361.1 385454 387679 R COG2217 Cation transport ATPase; Copper-transporting ATPase/P-type transporting ATPase; putative membrane protein complement(385454..387679) Helicobacter pylori SouthAfrica7 12350537 YP_005771007.1 CDS HPSA_01905 NC_017361.1 387676 388389 R COG1183 Phosphatidylserine synthase; CDP-diacylglycerol--serine O-phosphatidyltransferase (Phosphatidylserine synthase); putative membrane complement(387676..388389) Helicobacter pylori SouthAfrica7 12350538 YP_005771008.1 CDS HPSA_01910 NC_017361.1 388634 390532 R COG0465 ATP-dependent Zn proteases; cell division protein complement(388634..390532) Helicobacter pylori SouthAfrica7 12350539 YP_005771009.1 CDS prmA NC_017361.1 390541 391542 R COG2264 Ribosomal protein L11 methylase; 50S ribosomal protein L11 methyltransferase complement(390541..391542) Helicobacter pylori SouthAfrica7 12350540 YP_005771010.1 CDS HPSA_01920 NC_017361.1 391543 391917 R COG0784 FOG: CheY-like receiver; response regulator complement(391543..391917) Helicobacter pylori SouthAfrica7 12350541 YP_005771011.1 CDS HPSA_01925 NC_017361.1 392202 392804 D outer membrane protein HorD 392202..392804 Helicobacter pylori SouthAfrica7 12350542 YP_005771012.1 CDS HPSA_01930 NC_017361.1 392936 393343 R hypothetical protein complement(392936..393343) Helicobacter pylori SouthAfrica7 12350544 YP_005771013.1 CDS HPSA_01935 NC_017361.1 393346 393588 R hypothetical protein complement(393346..393588) Helicobacter pylori SouthAfrica7 12350545 YP_005771014.1 CDS gidB NC_017361.1 393582 394118 R COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB complement(393582..394118) Helicobacter pylori SouthAfrica7 12350546 YP_005771015.1 CDS queA NC_017361.1 394115 395152 R COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(394115..395152) Helicobacter pylori SouthAfrica7 12350547 YP_005771016.1 CDS HPSA_01950 NC_017361.1 395153 395890 R COG0805 Sec-independent protein secretion pathway component TatC; twin arginine-targeting protein translocase TatC complement(395153..395890) Helicobacter pylori SouthAfrica7 12350548 YP_005771017.1 CDS HPSA_01955 NC_017361.1 395883 396380 R COG1826 Sec-independent protein secretion pathway components; sec-independent translocase complement(395883..396380) Helicobacter pylori SouthAfrica7 12350549 YP_005771018.1 CDS ruvB NC_017361.1 396509 397519 R COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB complement(396509..397519) Helicobacter pylori SouthAfrica7 12350550 YP_005771019.1 CDS panB NC_017361.1 397519 398331 R COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(397519..398331) Helicobacter pylori SouthAfrica7 12350551 YP_005771020.1 CDS HPSA_01970 NC_017361.1 398478 399200 D hypothetical protein 398478..399200 Helicobacter pylori SouthAfrica7 12350552 YP_005771021.1 CDS HPSA_01975 NC_017361.1 399190 400029 D hypothetical protein 399190..400029 Helicobacter pylori SouthAfrica7 12350553 YP_005771022.1 CDS HPSA_01980 NC_017361.1 400041 400982 D hypothetical protein 400041..400982 Helicobacter pylori SouthAfrica7 12350554 YP_005771023.1 CDS HPSA_01985 NC_017361.1 400992 402314 D COG0739 Membrane proteins related to metalloendopeptidases; metalloendopeptidase related membrane protein 400992..402314 Helicobacter pylori SouthAfrica7 12350555 YP_005771024.1 CDS minC NC_017361.1 402317 402904 D COG0850 Septum formation inhibitor; septum formation inhibitor 402317..402904 Helicobacter pylori SouthAfrica7 12350556 YP_005771025.1 CDS lpxC NC_017361.1 402901 403788 D COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 402901..403788 Helicobacter pylori SouthAfrica7 12350557 YP_005771026.1 CDS HPSA_02000 NC_017361.1 403810 404289 D COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 403810..404289 Helicobacter pylori SouthAfrica7 12350558 YP_005771027.1 CDS HPSA_02005 NC_017361.1 404344 405225 D COG0083 Homoserine kinase; homoserine kinase 404344..405225 Helicobacter pylori SouthAfrica7 12350559 YP_005771028.1 CDS HPSA_02010 NC_017361.1 405212 405466 D COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 405212..405466 Helicobacter pylori SouthAfrica7 12350560 YP_005771029.1 CDS infB NC_017361.1 405463 408324 D COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 405463..408324 Helicobacter pylori SouthAfrica7 12350561 YP_005771030.1 CDS rbfA NC_017361.1 408324 408659 D COG0858 Ribosome-binding factor A; ribosome-binding factor A 408324..408659 Helicobacter pylori SouthAfrica7 12350562 YP_005771031.1 CDS HPSA_02025 NC_017361.1 408652 409092 D COG0779 Uncharacterized protein conserved in bacteria; Ribosome maturation factor rimP 408652..409092 Helicobacter pylori SouthAfrica7 12350563 YP_005771032.1 CDS HPSA_02030 NC_017361.1 409245 410357 D COG1408 Predicted phosphohydrolases; hypothetical protein 409245..410357 Helicobacter pylori SouthAfrica7 12350564 YP_005771033.1 CDS HPSA_02035 NC_017361.1 410710 411381 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; OmpR family two-component system response regulator 410710..411381 Helicobacter pylori SouthAfrica7 12350565 YP_005771034.1 CDS HPSA_02040 NC_017361.1 411834 412877 R COG2404 Predicted phosphohydrolase (DHH superfamily); hypothetical protein complement(411834..412877) Helicobacter pylori SouthAfrica7 12350566 YP_005771035.1 CDS flhA NC_017361.1 412896 415097 R COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA complement(412896..415097) Helicobacter pylori SouthAfrica7 12350567 YP_005771036.1 CDS rpsO NC_017361.1 415242 415514 D COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 415242..415514 Helicobacter pylori SouthAfrica7 12350568 YP_005771037.1 CDS HPSA_02060 NC_017361.1 415706 415828 R hypothetical protein complement(415706..415828) Helicobacter pylori SouthAfrica7 12350569 YP_005771038.1 CDS HPSA_02070 NC_017361.1 416979 417482 D COG0757 3-dehydroquinate dehydratase II; 3-dehydroquinate dehydratase 416979..417482 Helicobacter pylori SouthAfrica7 12350570 YP_005771039.1 CDS HPSA_02075 NC_017361.1 417494 418567 D COG0006 Xaa-Pro aminopeptidase; X-Pro aminopeptidase 417494..418567 Helicobacter pylori SouthAfrica7 12350571 YP_005771040.1 CDS HPSA_02080 NC_017361.1 418564 419055 D COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 418564..419055 Helicobacter pylori SouthAfrica7 12350572 YP_005771041.1 CDS flhF NC_017361.1 419052 420425 D COG1419 Flagellar GTP-binding protein; flagellar biosynthesis regulator FlhF 419052..420425 Helicobacter pylori SouthAfrica7 12350573 YP_005771042.1 CDS HPSA_02090 NC_017361.1 420422 421306 D COG0455 ATPases involved in chromosome partitioning; hypothetical protein 420422..421306 Helicobacter pylori SouthAfrica7 12350574 YP_005771043.1 CDS fliA NC_017361.1 421603 422370 D COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor 421603..422370 Helicobacter pylori SouthAfrica7 12350575 YP_005771044.1 CDS fliM NC_017361.1 422363 423427 D COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 422363..423427 Helicobacter pylori SouthAfrica7 12350576 YP_005771045.1 CDS HPSA_02105 NC_017361.1 423432 424280 D COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation; flagellar motor switch protein FliY 423432..424280 Helicobacter pylori SouthAfrica7 12350577 YP_005771046.1 CDS HPSA_02110 NC_017361.1 424311 424847 D COG2731 Beta-galactosidase, beta subunit; hypothetical protein 424311..424847 Helicobacter pylori SouthAfrica7 12350578 YP_005771047.1 CDS HPSA_02115 NC_017361.1 424844 425347 D COG4731 Uncharacterized protein conserved in bacteria; hypothetical protein 424844..425347 Helicobacter pylori SouthAfrica7 12350579 YP_005771048.1 CDS HPSA_02120 NC_017361.1 425370 425822 R COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein complement(425370..425822) Helicobacter pylori SouthAfrica7 12350580 YP_005771049.1 CDS HPSA_02125 NC_017361.1 425984 427159 R COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA complement(425984..427159) Helicobacter pylori SouthAfrica7 12350581 YP_005771050.1 CDS HPSA_02130 NC_017361.1 427156 427527 R COG0789 Predicted transcriptional regulators; heat shock transcriptional regulator complement(427156..427527) Helicobacter pylori SouthAfrica7 12350582 YP_005771051.1 CDS HPSA_02135 NC_017361.1 427537 428403 R COG2214 DnaJ-class molecular chaperone; co-chaperone-curved DNA binding protein A complement(427537..428403) Helicobacter pylori SouthAfrica7 12350583 YP_005771052.1 CDS HPSA_02140 NC_017361.1 428570 429820 D hypothetical protein 428570..429820 Helicobacter pylori SouthAfrica7 12350584 YP_005771053.1 CDS HPSA_02145 NC_017361.1 430064 430870 R COG0258 5'-3' exonuclease (including N-terminal domain of PolI); hypothetical protein complement(430064..430870) Helicobacter pylori SouthAfrica7 12350585 YP_005771054.1 CDS HPSA_02150 NC_017361.1 431171 432067 R COG0784 FOG: CheY-like receiver; response regulator complement(431171..432067) Helicobacter pylori SouthAfrica7 12350586 YP_005771055.1 CDS ispDF NC_017361.1 432088 433308 R COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(432088..433308) Helicobacter pylori SouthAfrica7 12350587 YP_005771056.1 CDS HPSA_02160 NC_017361.1 433332 434762 R COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; putative serine protease, peptidase S1C HrtA/DegP2/Q/S family; putative signal peptide complement(433332..434762) Helicobacter pylori SouthAfrica7 12350588 YP_005771057.1 CDS HPSA_02165 NC_017361.1 434807 436234 R COG0833 Amino acid transporters; amino acid permease complement(434807..436234) Helicobacter pylori SouthAfrica7 12350589 YP_005771058.1 CDS HPSA_02170 NC_017361.1 436501 437040 R COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthase complement(436501..437040) Helicobacter pylori SouthAfrica7 12350590 YP_005771059.1 CDS HPSA_02175 NC_017361.1 437037 437645 R hypothetical protein complement(437037..437645) Helicobacter pylori SouthAfrica7 12350591 YP_005771060.1 CDS HPSA_02180 NC_017361.1 437655 438443 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 7-alpha-hydroxysteroid dehydrogenase complement(437655..438443) Helicobacter pylori SouthAfrica7 12350592 YP_005771061.1 CDS HPSA_02185 NC_017361.1 438440 439342 R COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase complement(438440..439342) Helicobacter pylori SouthAfrica7 12350593 YP_005771062.1 CDS HPSA_02190 NC_017361.1 439357 440691 R COG0612 Predicted Zn-dependent peptidases; putative zinc protease complement(439357..440691) Helicobacter pylori SouthAfrica7 12350594 YP_005771063.1 CDS HPSA_02195 NC_017361.1 440688 441743 R COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 complement(440688..441743) Helicobacter pylori SouthAfrica7 12350595 YP_005771064.1 CDS HPSA_02200 NC_017361.1 441788 443815 R COG0855 Polyphosphate kinase; polyphosphate kinase complement(441788..443815) Helicobacter pylori SouthAfrica7 12350596 YP_005771065.1 CDS HPSA_02205 NC_017361.1 444030 445157 R COG0732 Restriction endonuclease S subunits; type I restriction enzyme S protein complement(444030..445157) Helicobacter pylori SouthAfrica7 12350598 YP_005771066.1 CDS HPSA_02220 NC_017361.1 446775 449096 R COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein (hsdR) complement(446775..449096) Helicobacter pylori SouthAfrica7 12350599 YP_005771067.1 CDS HPSA_02225 NC_017361.1 449323 449955 R COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein (hsdR) complement(449323..449955) Helicobacter pylori SouthAfrica7 12350600 YP_005771068.1 CDS HPSA_02230 NC_017361.1 450024 451898 R COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein complement(450024..451898) Helicobacter pylori SouthAfrica7 12350601 YP_005771069.1 CDS HPSA_02235 NC_017361.1 451924 452691 R hypothetical protein complement(451924..452691) Helicobacter pylori SouthAfrica7 12350602 YP_005771070.1 CDS HPSA_02240 NC_017361.1 452701 453015 R hypothetical protein complement(452701..453015) Helicobacter pylori SouthAfrica7 12350603 YP_005771071.1 CDS HPSA_02245 NC_017361.1 453017 454504 R COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; hypothetical protein complement(453017..454504) Helicobacter pylori SouthAfrica7 12350604 YP_005771072.1 CDS HPSA_02250 NC_017361.1 454516 455004 R hypothetical protein complement(454516..455004) Helicobacter pylori SouthAfrica7 12350605 YP_005771073.1 CDS HPSA_02255 NC_017361.1 454989 456725 R COG1164 Oligoendopeptidase F; oligoendopeptidase F complement(454989..456725) Helicobacter pylori SouthAfrica7 12350606 YP_005771074.1 CDS HPSA_02260 NC_017361.1 456816 458066 R COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein (kefB) complement(456816..458066) Helicobacter pylori SouthAfrica7 12350607 YP_005771075.1 CDS HPSA_02265 NC_017361.1 458402 458962 R Outer membrane protein HorE; putative signal peptide complement(458402..458962) Helicobacter pylori SouthAfrica7 12350608 YP_005771076.1 CDS HPSA_02270 NC_017361.1 459394 460134 D COG0725 ABC-type molybdate transport system, periplasmic component; molybdenum ABC transporter ModA 459394..460134 Helicobacter pylori SouthAfrica7 12350609 YP_005771077.1 CDS HPSA_02275 NC_017361.1 460156 460830 D COG4149 ABC-type molybdate transport system, permease component; molybdenum ABC transporter ModB 460156..460830 Helicobacter pylori SouthAfrica7 12350610 YP_005771078.1 CDS HPSA_02280 NC_017361.1 460827 461624 D COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; molybdate transport system ATP-binding protein 460827..461624 Helicobacter pylori SouthAfrica7 12350611 YP_005771079.1 CDS gltX NC_017361.1 461871 463262 R COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase complement(461871..463262) Helicobacter pylori SouthAfrica7 12350612 YP_005771080.1 CDS HPSA_02290 NC_017361.1 463381 464496 D hypothetical protein 463381..464496 Helicobacter pylori SouthAfrica7 12350613 YP_005771081.1 CDS HPSA_02295 NC_017361.1 464505 466142 D COG0286 Type I restriction-modification system methyltransferase subunit; type II adenine specific methyltransferase 464505..466142 Helicobacter pylori SouthAfrica7 12350614 YP_005771082.1 CDS HPSA_02300 NC_017361.1 466108 466956 D COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein 466108..466956 Helicobacter pylori SouthAfrica7 12350615 YP_005771083.1 CDS HPSA_02305 NC_017361.1 467002 468801 D COG1217 Predicted membrane GTPase involved in stress response; GTP-binding elongation factor protein, TypA subfamily 467002..468801 Helicobacter pylori SouthAfrica7 12350616 YP_005771084.1 CDS HPSA_02310 NC_017361.1 469185 470510 D COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 469185..470510 Helicobacter pylori SouthAfrica7 12350617 YP_005771085.1 CDS HPSA_02315 NC_017361.1 470507 470767 D COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 470507..470767 Helicobacter pylori SouthAfrica7 12350618 YP_005771086.1 CDS HPSA_02320 NC_017361.1 470769 471815 D COG0270 Site-specific DNA methylase; type II DNA modification (methyltransferase) 470769..471815 Helicobacter pylori SouthAfrica7 12350619 YP_005771087.1 CDS HPSA_02335 NC_017361.1 472706 472831 D hypothetical protein 472706..472831 Helicobacter pylori SouthAfrica7 12350620 YP_005771088.1 CDS HPSA_02340 NC_017361.1 472815 473759 R COG0753 Catalase; catalase-like protein complement(472815..473759) Helicobacter pylori SouthAfrica7 12350621 YP_005771089.1 CDS HPSA_02345 NC_017361.1 474104 475690 D Outer membrane protein HofC; putative signal peptide 474104..475690 Helicobacter pylori SouthAfrica7 12350622 YP_005771090.1 CDS HPSA_02350 NC_017361.1 475760 477157 D hypothetical protein 475760..477157 Helicobacter pylori SouthAfrica7 12350623 YP_005771091.1 CDS HPSA_02355 NC_017361.1 477315 480407 D hypothetical protein 477315..480407 Helicobacter pylori SouthAfrica7 12350624 YP_005771092.1 CDS HPSA_02360 NC_017361.1 480420 481394 D hypothetical protein 480420..481394 Helicobacter pylori SouthAfrica7 12350625 YP_005771093.1 CDS HPSA_02365 NC_017361.1 481513 482649 R COG1226 Kef-type K+ transport systems, predicted NAD-binding component; putative potassium channel protein complement(481513..482649) Helicobacter pylori SouthAfrica7 12350626 YP_005771094.1 CDS rpmB NC_017361.1 482843 483031 R COG0227 Ribosomal protein L28; 50S ribosomal protein L28 complement(482843..483031) Helicobacter pylori SouthAfrica7 12350627 YP_005771095.1 CDS HPSA_02375 NC_017361.1 483131 483985 R putative HpaA-like protein complement(483131..483985) Helicobacter pylori SouthAfrica7 12350628 YP_005771096.1 CDS mraY NC_017361.1 484123 485184 D COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 484123..485184 Helicobacter pylori SouthAfrica7 12350629 YP_005771097.1 CDS murD NC_017361.1 485185 486453 D COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 485185..486453 Helicobacter pylori SouthAfrica7 12350630 YP_005771098.1 CDS HPSA_02390 NC_017361.1 486465 486725 R hypothetical protein complement(486465..486725) Helicobacter pylori SouthAfrica7 12350631 YP_005771099.1 CDS HPSA_02395 NC_017361.1 486715 487116 R COG0824 Predicted thioesterase; hypothetical protein complement(486715..487116) Helicobacter pylori SouthAfrica7 12350632 YP_005771100.1 CDS HPSA_02400 NC_017361.1 487347 488672 D COG0733 Na+-dependent transporters of the SNF family; sodium- and chloride-dependent transporter 487347..488672 Helicobacter pylori SouthAfrica7 12350633 YP_005771101.1 CDS HPSA_02405 NC_017361.1 488686 490014 D COG0733 Na+-dependent transporters of the SNF family; hypothetical protein 488686..490014 Helicobacter pylori SouthAfrica7 12350634 YP_005771102.1 CDS HPSA_02410 NC_017361.1 490029 491099 D COG2829 Outer membrane phospholipase A; phospholipase A1 490029..491099 Helicobacter pylori SouthAfrica7 12350635 YP_005771103.1 CDS HPSA_02415 NC_017361.1 491155 492279 D COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta 491155..492279 Helicobacter pylori SouthAfrica7 12350636 YP_005771104.1 CDS gyrB NC_017361.1 492291 494612 D COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 492291..494612 Helicobacter pylori SouthAfrica7 12350637 YP_005771105.1 CDS HPSA_02425 NC_017361.1 494657 495649 D hypothetical protein 494657..495649 Helicobacter pylori SouthAfrica7 12350638 YP_005771106.1 CDS HPSA_02440 NC_017361.1 496600 497817 D COG0739 Membrane proteins related to metalloendopeptidases; putative outer membrane protein 496600..497817 Helicobacter pylori SouthAfrica7 12350639 YP_005771107.1 CDS HPSA_02445 NC_017361.1 497817 498464 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; hypothetical protein 497817..498464 Helicobacter pylori SouthAfrica7 12350640 YP_005771108.1 CDS HPSA_02450 NC_017361.1 498475 499836 D hypothetical protein 498475..499836 Helicobacter pylori SouthAfrica7 12350641 YP_005771109.1 CDS HPSA_02455 NC_017361.1 499840 501219 D COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase subunit GlcD 499840..501219 Helicobacter pylori SouthAfrica7 12350642 YP_005771110.1 CDS HPSA_02460 NC_017361.1 501242 502006 D COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 501242..502006 Helicobacter pylori SouthAfrica7 12350643 YP_005771111.1 CDS HPSA_02465 NC_017361.1 502638 505289 R COG1112 Superfamily I DNA and RNA helicases and helicase subunits; AAA ATPase complement(502638..505289) Helicobacter pylori SouthAfrica7 12350644 YP_005771112.1 CDS HPSA_02470 NC_017361.1 505433 506017 R hypothetical protein complement(505433..506017) Helicobacter pylori SouthAfrica7 12350645 YP_005771113.1 CDS HPSA_02475 NC_017361.1 506017 506304 R hypothetical protein complement(506017..506304) Helicobacter pylori SouthAfrica7 12350646 YP_005771114.1 CDS HPSA_02480 NC_017361.1 506499 507032 R hypothetical protein complement(506499..507032) Helicobacter pylori SouthAfrica7 12350647 YP_005771115.1 CDS HPSA_02485 NC_017361.1 507029 507703 R hypothetical protein complement(507029..507703) Helicobacter pylori SouthAfrica7 12350648 YP_005771116.1 CDS HPSA_02490 NC_017361.1 507883 508875 R COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein complement(507883..508875) Helicobacter pylori SouthAfrica7 12350649 YP_005771117.1 CDS era NC_017361.1 508872 509777 R COG1159 GTPase; GTP-binding protein Era complement(508872..509777) Helicobacter pylori SouthAfrica7 12350650 YP_005771118.1 CDS hslU NC_017361.1 509777 511108 R COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU complement(509777..511108) Helicobacter pylori SouthAfrica7 12350651 YP_005771119.1 CDS HPSA_02505 NC_017361.1 511108 511650 R COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease peptidase subunit complement(511108..511650) Helicobacter pylori SouthAfrica7 12350652 YP_005771120.1 CDS rplI NC_017361.1 511654 512103 R COG0359 Ribosomal protein L9; 50S ribosomal protein L9 complement(511654..512103) Helicobacter pylori SouthAfrica7 12350653 YP_005771121.1 CDS HPSA_02525 NC_017361.1 514357 515802 D COG0174 Glutamine synthetase; glutamine synthetase 514357..515802 Helicobacter pylori SouthAfrica7 12350654 YP_005771122.1 CDS HPSA_02530 NC_017361.1 516030 516854 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(516030..516854) Helicobacter pylori SouthAfrica7 12350655 YP_005771123.1 CDS HPSA_02535 NC_017361.1 516864 517631 R COG0796 Glutamate racemase; glutamate racemase complement(516864..517631) Helicobacter pylori SouthAfrica7 12350656 YP_005771124.1 CDS rho NC_017361.1 517651 518967 R COG1158 Transcription termination factor; transcription termination factor Rho complement(517651..518967) Helicobacter pylori SouthAfrica7 12350657 YP_005771125.1 CDS rpmE NC_017361.1 519230 519433 D COG0254 Ribosomal protein L31; 50S ribosomal protein L31 519230..519433 Helicobacter pylori SouthAfrica7 12350658 YP_005771126.1 CDS HPSA_02550 NC_017361.1 519458 520321 D COG0313 Predicted methyltransferases; putative methylase 519458..520321 Helicobacter pylori SouthAfrica7 12350659 YP_005771127.1 CDS HPSA_02555 NC_017361.1 520334 521017 D COG0566 rRNA methylases; RNA methyltransferase 520334..521017 Helicobacter pylori SouthAfrica7 12350660 YP_005771128.1 CDS HPSA_02560 NC_017361.1 521029 521994 D hypothetical protein 521029..521994 Helicobacter pylori SouthAfrica7 12350661 YP_005771129.1 CDS HPSA_02565 NC_017361.1 521991 522815 D COG1217 Predicted membrane GTPase involved in stress response; hypothetical protein 521991..522815 Helicobacter pylori SouthAfrica7 12350662 YP_005771130.1 CDS HPSA_02570 NC_017361.1 522879 523322 R hypothetical protein complement(522879..523322) Helicobacter pylori SouthAfrica7 12350663 YP_005771131.1 CDS HPSA_02575 NC_017361.1 523562 524503 R COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(523562..524503) Helicobacter pylori SouthAfrica7 12350664 YP_005771132.1 CDS HPSA_02580 NC_017361.1 524526 525764 R COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II complement(524526..525764) Helicobacter pylori SouthAfrica7 12350665 YP_005771133.1 CDS acpP NC_017361.1 525867 526103 R COG0236 Acyl carrier protein; acyl carrier protein complement(525867..526103) Helicobacter pylori SouthAfrica7 12350666 YP_005771134.1 CDS fabG NC_017361.1 526329 527072 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-ACP reductase complement(526329..527072) Helicobacter pylori SouthAfrica7 12350667 YP_005771135.1 CDS rpsU NC_017361.1 527111 527323 R COG0828 Ribosomal protein S21; 30S ribosomal protein S21 complement(527111..527323) Helicobacter pylori SouthAfrica7 12350668 YP_005771136.1 CDS HPSA_02600 NC_017361.1 527424 528674 R hypothetical protein complement(527424..528674) Helicobacter pylori SouthAfrica7 12350669 YP_005771137.1 CDS HPSA_02605 NC_017361.1 528847 529050 D hypothetical protein 528847..529050 Helicobacter pylori SouthAfrica7 12350670 YP_005771138.1 CDS HPSA_02610 NC_017361.1 529102 529749 R COG3059 Predicted membrane protein; hypothetical protein complement(529102..529749) Helicobacter pylori SouthAfrica7 12350671 YP_005771139.1 CDS dapF NC_017361.1 529861 530682 R COG0253 Diaminopimelate epimerase; diaminopimelate epimerase complement(529861..530682) Helicobacter pylori SouthAfrica7 12350672 YP_005771140.1 CDS HPSA_02620 NC_017361.1 530799 531881 D COG0628 Predicted permease; hypothetical protein 530799..531881 Helicobacter pylori SouthAfrica7 12350673 YP_005771141.1 CDS HPSA_02625 NC_017361.1 532819 533586 R hypothetical protein complement(532819..533586) Helicobacter pylori SouthAfrica7 12350674 YP_005771142.1 CDS HPSA_02630 NC_017361.1 533728 534828 R COG0012 Predicted GTPase, probable translation factor; GTP-dependent nucleic acid-binding protein EngD complement(533728..534828) Helicobacter pylori SouthAfrica7 12350675 YP_005771143.1 CDS HPSA_02635 NC_017361.1 534830 536320 R COG0260 Leucyl aminopeptidase; leucyl aminopeptidase complement(534830..536320) Helicobacter pylori SouthAfrica7 12350676 YP_005771144.1 CDS HPSA_02640 NC_017361.1 536371 536949 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(536371..536949) Helicobacter pylori SouthAfrica7 12350677 YP_005771145.1 CDS HPSA_02645 NC_017361.1 536961 537500 R COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase complement(536961..537500) Helicobacter pylori SouthAfrica7 12350678 YP_005771146.1 CDS HPSA_02650 NC_017361.1 537560 537892 R hypothetical protein complement(537560..537892) Helicobacter pylori SouthAfrica7 12350679 YP_005771147.1 CDS HPSA_02655 NC_017361.1 537938 538399 R COG0698 Ribose 5-phosphate isomerase RpiB; ribose-5-phosphate isomerase B complement(537938..538399) Helicobacter pylori SouthAfrica7 12350680 YP_005771148.1 CDS HPSA_02660 NC_017361.1 538420 539118 R COG1994 Zn-dependent proteases; hypothetical protein complement(538420..539118) Helicobacter pylori SouthAfrica7 12350681 YP_005771149.1 CDS HPSA_02665 NC_017361.1 539127 539999 R COG0681 Signal peptidase I; signal peptidase I (lepB) complement(539127..539999) Helicobacter pylori SouthAfrica7 12350682 YP_005771150.1 CDS HPSA_02670 NC_017361.1 540000 540872 R COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(540000..540872) Helicobacter pylori SouthAfrica7 12350683 YP_005771151.1 CDS HPSA_02675 NC_017361.1 541186 543216 R COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; hypothetical protein complement(541186..543216) Helicobacter pylori SouthAfrica7 12350684 YP_005771152.1 CDS HPSA_02680 NC_017361.1 543213 543773 R hypothetical protein complement(543213..543773) Helicobacter pylori SouthAfrica7 12350685 YP_005771153.1 CDS HPSA_02685 NC_017361.1 543779 544777 R COG4692 Predicted neuraminidase (sialidase); neuraminidase (sialidase) complement(543779..544777) Helicobacter pylori SouthAfrica7 12350686 YP_005771154.1 CDS HPSA_02690 NC_017361.1 544874 545893 R COG0418 Dihydroorotase; dihydroorotase complement(544874..545893) Helicobacter pylori SouthAfrica7 12350687 YP_005771155.1 CDS HPSA_02695 NC_017361.1 545903 546856 R COG0810 Periplasmic protein TonB, links inner and outer membranes; hypothetical protein complement(545903..546856) Helicobacter pylori SouthAfrica7 12350688 YP_005771156.1 CDS HPSA_02710 NC_017361.1 547711 548082 R COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein complement(547711..548082) Helicobacter pylori SouthAfrica7 12350689 YP_005771157.1 CDS HPSA_02715 NC_017361.1 548164 548814 R COG0177 Predicted EndoIII-related endonuclease; endonuclease III complement(548164..548814) Helicobacter pylori SouthAfrica7 12350690 YP_005771158.1 CDS HPSA_02720 NC_017361.1 548816 549046 R COG1918 Fe2+ transport system protein A; ferrous iron transport protein A complement(548816..549046) Helicobacter pylori SouthAfrica7 12350691 YP_005771159.1 CDS HPSA_02725 NC_017361.1 549048 551978 R hypothetical protein complement(549048..551978) Helicobacter pylori SouthAfrica7 12350692 YP_005771160.1 CDS HPSA_02730 NC_017361.1 551896 552891 D COG1559 Predicted periplasmic solute-binding protein; aminodeoxychorismate lyase 551896..552891 Helicobacter pylori SouthAfrica7 12350693 YP_005771161.1 CDS oorD NC_017361.1 553070 553411 D COG1146 Ferredoxin; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 553070..553411 Helicobacter pylori SouthAfrica7 12350694 YP_005771162.1 CDS oorA NC_017361.1 553411 554538 D COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 553411..554538 Helicobacter pylori SouthAfrica7 12350695 YP_005771163.1 CDS oorB NC_017361.1 554540 555361 D COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 554540..555361 Helicobacter pylori SouthAfrica7 12350696 YP_005771164.1 CDS oorC NC_017361.1 555361 555915 D COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 555361..555915 Helicobacter pylori SouthAfrica7 12350697 YP_005771165.1 CDS HPSA_02755 NC_017361.1 556024 557361 D COG5610 Predicted hydrolase (HAD superfamily); hypothetical protein 556024..557361 Helicobacter pylori SouthAfrica7 12350698 YP_005771166.1 CDS HPSA_02760 NC_017361.1 557462 557878 R COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 complement(557462..557878) Helicobacter pylori SouthAfrica7 12350699 YP_005771167.1 CDS HPSA_02765 NC_017361.1 557915 559243 D COG0675 Transposase and inactivated derivatives; IS606 transposase 557915..559243 Helicobacter pylori SouthAfrica7 12350700 YP_005771168.1 CDS HPSA_02770 NC_017361.1 559319 559771 D hypothetical protein 559319..559771 Helicobacter pylori SouthAfrica7 12350701 YP_005771169.1 CDS HPSA_02775 NC_017361.1 559931 560095 D hypothetical protein 559931..560095 Helicobacter pylori SouthAfrica7 12350702 YP_005771170.1 CDS HPSA_02780 NC_017361.1 560104 561576 D COG1495 Disulfide bond formation protein DsbB; hypothetical protein 560104..561576 Helicobacter pylori SouthAfrica7 12350703 YP_005771171.1 CDS HPSA_02785 NC_017361.1 561774 561893 R hypothetical protein complement(561774..561893) Helicobacter pylori SouthAfrica7 12350704 YP_005771172.1 CDS HPSA_02790 NC_017361.1 562056 562634 D tumor necrosis factor alpha-inducing protein 562056..562634 Helicobacter pylori SouthAfrica7 12350705 YP_005771173.1 CDS HPSA_02795 NC_017361.1 562637 564616 R COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1A complement(562637..564616) Helicobacter pylori SouthAfrica7 12350706 YP_005771174.1 CDS HPSA_02800 NC_017361.1 564617 565738 R COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase complement(564617..565738) Helicobacter pylori SouthAfrica7 12350707 YP_005771175.1 CDS HPSA_02805 NC_017361.1 565761 567062 R COG0840 Methyl-accepting chemotaxis protein; hemolysin secretion protein complement(565761..567062) Helicobacter pylori SouthAfrica7 12350708 YP_005771176.1 CDS HPSA_02820 NC_017361.1 567779 568429 R hypothetical protein complement(567779..568429) Helicobacter pylori SouthAfrica7 12350709 YP_005771177.1 CDS HPSA_02825 NC_017361.1 568432 568563 R hypothetical protein complement(568432..568563) Helicobacter pylori SouthAfrica7 12350710 YP_005771178.1 CDS HPSA_02830 NC_017361.1 568865 570397 D COG1344 Flagellin and related hook-associated proteins; flagellin A 568865..570397 Helicobacter pylori SouthAfrica7 12350711 YP_005771179.1 CDS HPSA_02835 NC_017361.1 570526 571182 D COG2231 Uncharacterized protein related to Endonuclease III; 3-methyladenine DNA glycosylase 570526..571182 Helicobacter pylori SouthAfrica7 12350712 YP_005771180.1 CDS HPSA_02840 NC_017361.1 571179 571796 D hypothetical protein 571179..571796 Helicobacter pylori SouthAfrica7 12350713 YP_005771181.1 CDS hemE NC_017361.1 571865 572884 D COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 571865..572884 Helicobacter pylori SouthAfrica7 12350714 YP_005771182.1 CDS HPSA_02850 NC_017361.1 572894 574342 D COG1538 Outer membrane protein; outer-membrane protein of the hefABC efflux system 572894..574342 Helicobacter pylori SouthAfrica7 12350715 YP_005771183.1 CDS HPSA_02855 NC_017361.1 574353 575057 D COG0845 Membrane-fusion protein; putative efflux transporter 574353..575057 Helicobacter pylori SouthAfrica7 12350716 YP_005771184.1 CDS HPSA_02860 NC_017361.1 575070 578156 D COG0841 Cation/multidrug efflux pump; acriflavine resistance protein AcrB 575070..578156 Helicobacter pylori SouthAfrica7 12350717 YP_005771185.1 CDS HPSA_02865 NC_017361.1 578153 578722 D COG0015 Adenylosuccinate lyase; hypothetical protein 578153..578722 Helicobacter pylori SouthAfrica7 12350718 YP_005771186.1 CDS HPSA_02870 NC_017361.1 578885 588457 D putative vacuolating cytotoxin VacA 578885..588457 Helicobacter pylori SouthAfrica7 12350719 YP_005771187.1 CDS HPSA_02875 NC_017361.1 588513 588866 R COG0842 ABC-type multidrug transport system, permease component; multidrug ABC transporter permease complement(588513..588866) Helicobacter pylori SouthAfrica7 12350720 YP_005771188.1 CDS HPSA_02880 NC_017361.1 590229 590561 R COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; hypothetical protein complement(590229..590561) Helicobacter pylori SouthAfrica7 12350721 YP_005771189.1 CDS ligA NC_017361.1 590743 592716 R COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA complement(590743..592716) Helicobacter pylori SouthAfrica7 12350722 YP_005771190.1 CDS HPSA_02890 NC_017361.1 592793 593734 D COG0835 Chemotaxis signal transduction protein; chemotaxis protein 592793..593734 Helicobacter pylori SouthAfrica7 12350723 YP_005771191.1 CDS aspS NC_017361.1 593770 595503 D COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 593770..595503 Helicobacter pylori SouthAfrica7 12350724 YP_005771192.1 CDS adk NC_017361.1 595520 596095 D COG0563 Adenylate kinase and related kinases; adenylate kinase 595520..596095 Helicobacter pylori SouthAfrica7 12350725 YP_005771193.1 CDS HPSA_02915 NC_017361.1 597164 597766 D COG3306 Glycosyltransferase involved in LPS biosynthesis; putative lipopolysaccharide biosynthesis protein 597164..597766 Helicobacter pylori SouthAfrica7 12350726 YP_005771194.1 CDS HPSA_02920 NC_017361.1 598003 598449 D putative lipopolysaccharide biosynthesis protein 598003..598449 Helicobacter pylori SouthAfrica7 12350727 YP_005771195.1 CDS HPSA_02925 NC_017361.1 598509 599030 D COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 598509..599030 Helicobacter pylori SouthAfrica7 12350728 YP_005771196.1 CDS HPSA_02930 NC_017361.1 599182 601422 R COG1193 Mismatch repair ATPase (MutS family); recombination and DNA strand exchange inhibitor protein complement(599182..601422) Helicobacter pylori SouthAfrica7 12350729 YP_005771197.1 CDS HPSA_02935 NC_017361.1 601438 601800 R hypothetical protein complement(601438..601800) Helicobacter pylori SouthAfrica7 12350730 YP_005771198.1 CDS murC NC_017361.1 601800 603149 R COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(601800..603149) Helicobacter pylori SouthAfrica7 12350731 YP_005771199.1 CDS HPSA_02945 NC_017361.1 603142 604269 R COG0436 Aspartate/tyrosine/aromatic aminotransferase; hypothetical protein complement(603142..604269) Helicobacter pylori SouthAfrica7 12350732 YP_005771200.1 CDS ispG NC_017361.1 604409 605485 D COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 604409..605485 Helicobacter pylori SouthAfrica7 12350733 YP_005771201.1 CDS HPSA_02955 NC_017361.1 605499 606701 D COG2171 Tetrahydrodipicolinate N-succinyltransferase; hypothetical protein 605499..606701 Helicobacter pylori SouthAfrica7 12350734 YP_005771202.1 CDS HPSA_02960 NC_017361.1 606713 607771 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 606713..607771 Helicobacter pylori SouthAfrica7 12350735 YP_005771203.1 CDS HPSA_02965 NC_017361.1 608158 610209 D COG1479 Uncharacterized conserved protein; hypothetical protein 608158..610209 Helicobacter pylori SouthAfrica7 12350736 YP_005771204.1 CDS HPSA_02970 NC_017361.1 610347 610931 R COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); modulator of drug activity (mda66) complement(610347..610931) Helicobacter pylori SouthAfrica7 12350737 YP_005771205.1 CDS HPSA_02975 NC_017361.1 611091 612248 D COG1740 Ni,Fe-hydrogenase I small subunit; Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive Ni/Fe-hydrogenase small chain precursor)(Membrane-bound) 611091..612248 Helicobacter pylori SouthAfrica7 12350738 YP_005771206.1 CDS HPSA_02980 NC_017361.1 612258 613994 D COG0374 Ni,Fe-hydrogenase I large subunit; nickel-dependent hydrogenase, large subunit 612258..613994 Helicobacter pylori SouthAfrica7 12350739 YP_005771207.1 CDS HPSA_02985 NC_017361.1 614007 614681 D COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 614007..614681 Helicobacter pylori SouthAfrica7 12350740 YP_005771208.1 CDS HPSA_02990 NC_017361.1 614678 615214 D COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase expression/formation protein 614678..615214 Helicobacter pylori SouthAfrica7 12350741 YP_005771209.1 CDS HPSA_02995 NC_017361.1 615216 616769 D COG0218 Predicted GTPase; hypothetical protein 615216..616769 Helicobacter pylori SouthAfrica7 12349520 YP_005771210.1 CDS HPSA_03000 NC_017361.1 616775 617188 R hypothetical protein complement(616775..617188) Helicobacter pylori SouthAfrica7 12349521 YP_005771211.1 CDS HPSA_03005 NC_017361.1 617332 617784 R hypothetical protein complement(617332..617784) Helicobacter pylori SouthAfrica7 12349522 YP_005771212.1 CDS HPSA_03010 NC_017361.1 618076 618177 R hypothetical protein complement(618076..618177) Helicobacter pylori SouthAfrica7 12349523 YP_005771213.1 CDS HPSA_03015 NC_017361.1 618206 618892 D outer membrane protein HopH 618206..618892 Helicobacter pylori SouthAfrica7 12349524 YP_005771214.1 CDS HPSA_03020 NC_017361.1 619130 619807 R COG0603 Predicted PP-loop superfamily ATPase; hypothetical protein complement(619130..619807) Helicobacter pylori SouthAfrica7 12349525 YP_005771215.1 CDS HPSA_03025 NC_017361.1 619869 621599 D COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; putative polynucleotide adenylyltransferase; putative poly(A) polymerase 619869..621599 Helicobacter pylori SouthAfrica7 12349526 YP_005771216.1 CDS HPSA_03030 NC_017361.1 621615 622472 D COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; putative 3-hydroxyacid dehydrogenase 621615..622472 Helicobacter pylori SouthAfrica7 12349527 YP_005771217.1 CDS HPSA_03035 NC_017361.1 622474 623127 D COG0778 Nitroreductase; NAD(P)H-flavin oxidoreductase 622474..623127 Helicobacter pylori SouthAfrica7 12349528 YP_005771218.1 CDS HPSA_03040 NC_017361.1 623289 624608 D COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamylglutaminyl-tRNA synthetase 623289..624608 Helicobacter pylori SouthAfrica7 12349529 YP_005771219.1 CDS HPSA_03045 NC_017361.1 624605 624898 D COG0762 Predicted integral membrane protein; hypothetical protein 624605..624898 Helicobacter pylori SouthAfrica7 12349530 YP_005771220.1 CDS HPSA_03050 NC_017361.1 624907 626583 D COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 624907..626583 Helicobacter pylori SouthAfrica7 12349531 YP_005771221.1 CDS HPSA_03055 NC_017361.1 626583 627404 D COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 626583..627404 Helicobacter pylori SouthAfrica7 12349532 YP_005771222.1 CDS HPSA_03060 NC_017361.1 627416 627820 D hypothetical protein 627416..627820 Helicobacter pylori SouthAfrica7 12349533 YP_005771223.1 CDS HPSA_03065 NC_017361.1 627823 629091 D COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 627823..629091 Helicobacter pylori SouthAfrica7 12349534 YP_005771224.1 CDS aspA NC_017361.1 629149 630555 D COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase 629149..630555 Helicobacter pylori SouthAfrica7 12349535 YP_005771225.1 CDS HPSA_03075 NC_017361.1 630600 631190 D COG1573 Uracil-DNA glycosylase; hypothetical protein 630600..631190 Helicobacter pylori SouthAfrica7 12349536 YP_005771226.1 CDS HPSA_03080 NC_017361.1 631200 632543 R alpha (1,3)-fucosyltransferase complement(631200..632543) Helicobacter pylori SouthAfrica7 12349537 YP_005771227.1 CDS HPSA_03085 NC_017361.1 632588 633211 R COG0560 Phosphoserine phosphatase; phosphoserine phosphatase SerB complement(632588..633211) Helicobacter pylori SouthAfrica7 12349538 YP_005771228.1 CDS HPSA_03090 NC_017361.1 633226 633729 R COG1528 Ferritin-like protein; ferritin complement(633226..633729) Helicobacter pylori SouthAfrica7 12349539 YP_005771229.1 CDS HPSA_03095 NC_017361.1 634035 635117 D COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 634035..635117 Helicobacter pylori SouthAfrica7 12349540 YP_005771230.1 CDS HPSA_03110 NC_017361.1 637917 638978 D COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 637917..638978 Helicobacter pylori SouthAfrica7 12349541 YP_005771231.1 CDS HPSA_03115 NC_017361.1 638984 640282 D COG0612 Predicted Zn-dependent peptidases; processing zinc-metalloprotease 638984..640282 Helicobacter pylori SouthAfrica7 12349542 YP_005771232.1 CDS gatB NC_017361.1 640282 641706 D COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); aspartyl/glutamyl-tRNA amidotransferase subunit B 640282..641706 Helicobacter pylori SouthAfrica7 12349543 YP_005771233.1 CDS HPSA_03125 NC_017361.1 641706 642950 D COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 641706..642950 Helicobacter pylori SouthAfrica7 12349544 YP_005771234.1 CDS HPSA_03130 NC_017361.1 642961 643971 D COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein 642961..643971 Helicobacter pylori SouthAfrica7 12349545 YP_005771235.1 CDS rnhA NC_017361.1 643972 644403 D COG0328 Ribonuclease HI; ribonuclease H 643972..644403 Helicobacter pylori SouthAfrica7 12349546 YP_005771236.1 CDS rnc NC_017361.1 644414 645118 D COG0571 dsRNA-specific ribonuclease; ribonuclease III 644414..645118 Helicobacter pylori SouthAfrica7 12349547 YP_005771237.1 CDS HPSA_03145 NC_017361.1 645115 646212 D COG0082 Chorismate synthase; chorismate synthase 645115..646212 Helicobacter pylori SouthAfrica7 12349548 YP_005771238.1 CDS HPSA_03150 NC_017361.1 646249 646764 D hypothetical protein 646249..646764 Helicobacter pylori SouthAfrica7 12349549 YP_005771239.1 CDS HPSA_03155 NC_017361.1 646764 648137 D COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 646764..648137 Helicobacter pylori SouthAfrica7 12349550 YP_005771240.1 CDS HPSA_03160 NC_017361.1 648134 649423 D COG0247 Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase 648134..649423 Helicobacter pylori SouthAfrica7 12349551 YP_005771241.1 CDS HPSA_03165 NC_017361.1 649499 650200 D COG4889 Predicted helicase; hypothetical protein 649499..650200 Helicobacter pylori SouthAfrica7 12349552 YP_005771242.1 CDS HPSA_03170 NC_017361.1 650223 650351 D COG4889 Predicted helicase; hypothetical protein 650223..650351 Helicobacter pylori SouthAfrica7 12349553 YP_005771243.1 CDS HPSA_03175 NC_017361.1 650348 652822 D COG0846 NAD-dependent protein deacetylases, SIR2 family; hypothetical protein 650348..652822 Helicobacter pylori SouthAfrica7 12349554 YP_005771244.1 CDS HPSA_03180 NC_017361.1 652797 652988 D hypothetical protein 652797..652988 Helicobacter pylori SouthAfrica7 12349555 YP_005771245.1 CDS HPSA_03185 NC_017361.1 653042 653854 D hypothetical protein 653042..653854 Helicobacter pylori SouthAfrica7 12349556 YP_005771246.1 CDS HPSA_03190 NC_017361.1 653857 653979 D hypothetical protein 653857..653979 Helicobacter pylori SouthAfrica7 12349557 YP_005771247.1 CDS HPSA_03195 NC_017361.1 654008 655180 D COG0436 Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase 654008..655180 Helicobacter pylori SouthAfrica7 12349558 YP_005771248.1 CDS HPSA_03210 NC_017361.1 656667 657734 D COG0582 Integrase; XerCD family integrase/recombinase 656667..657734 Helicobacter pylori SouthAfrica7 12349559 YP_005771249.1 CDS HPSA_03215 NC_017361.1 657798 658298 R COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(657798..658298) Helicobacter pylori SouthAfrica7 12349560 YP_005771250.1 CDS HPSA_03220 NC_017361.1 658302 659069 R COG0730 Predicted permeases; hypothetical protein complement(658302..659069) Helicobacter pylori SouthAfrica7 12349561 YP_005771251.1 CDS HPSA_03225 NC_017361.1 659183 660130 R COG0673 Predicted dehydrogenases and related proteins; putative lipopolysaccharide biosynthesis protein complement(659183..660130) Helicobacter pylori SouthAfrica7 12349562 YP_005771252.1 CDS HPSA_03230 NC_017361.1 660192 662558 R COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha complement(660192..662558) Helicobacter pylori SouthAfrica7 12349563 YP_005771253.1 CDS HPSA_03235 NC_017361.1 662740 663246 R hypothetical protein complement(662740..663246) Helicobacter pylori SouthAfrica7 12349564 YP_005771254.1 CDS HPSA_03240 NC_017361.1 663286 663606 R hypothetical protein complement(663286..663606) Helicobacter pylori SouthAfrica7 12349565 YP_005771255.1 CDS glmU NC_017361.1 663893 665194 R COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(663893..665194) Helicobacter pylori SouthAfrica7 12349566 YP_005771256.1 CDS fliP NC_017361.1 665291 666037 D COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 665291..666037 Helicobacter pylori SouthAfrica7 12349567 YP_005771257.1 CDS HPSA_03255 NC_017361.1 666080 668383 R COG4772 Outer membrane receptor for Fe3+-dicitrate; Iron(III) dicitrate transport protein FecA; putative signal peptide complement(666080..668383) Helicobacter pylori SouthAfrica7 12349568 YP_005771258.1 CDS HPSA_03260 NC_017361.1 668642 670570 R COG0370 Fe2+ transport system protein B; iron(II) transport protein (feoB) complement(668642..670570) Helicobacter pylori SouthAfrica7 12349569 YP_005771259.1 CDS HPSA_03265 NC_017361.1 670705 671517 D COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; hypothetical protein 670705..671517 Helicobacter pylori SouthAfrica7 12349570 YP_005771260.1 CDS HPSA_03270 NC_017361.1 671819 672994 D COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 671819..672994 Helicobacter pylori SouthAfrica7 12349571 YP_005771261.1 CDS HPSA_03275 NC_017361.1 673005 673703 D COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; succinyl-CoA-transferase subunit A 673005..673703 Helicobacter pylori SouthAfrica7 12349572 YP_005771262.1 CDS HPSA_03280 NC_017361.1 673700 674323 D COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; succinyl-CoA-transferase subunit B 673700..674323 Helicobacter pylori SouthAfrica7 12349573 YP_005771263.1 CDS HPSA_03285 NC_017361.1 674342 675706 D COG2031 Short chain fatty acids transporter; short-chain fatty acids transporter 674342..675706 Helicobacter pylori SouthAfrica7 12349574 YP_005771264.1 CDS HPSA_03290 NC_017361.1 675835 676836 D COG3528 Uncharacterized protein conserved in bacteria; outer membrane protein 675835..676836 Helicobacter pylori SouthAfrica7 12349575 YP_005771265.1 CDS HPSA_03295 NC_017361.1 677069 679210 D COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; hydantoin utilization protein A 677069..679210 Helicobacter pylori SouthAfrica7 12349576 YP_005771266.1 CDS HPSA_03300 NC_017361.1 679222 681519 D COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit; N-methyl hydantoinase 679222..681519 Helicobacter pylori SouthAfrica7 12349577 YP_005771267.1 CDS HPSA_03305 NC_017361.1 681548 682048 D COG4647 Acetone carboxylase, gamma subunit; hypothetical protein 681548..682048 Helicobacter pylori SouthAfrica7 12349578 YP_005771268.1 CDS HPSA_03310 NC_017361.1 682251 682439 D hypothetical protein 682251..682439 Helicobacter pylori SouthAfrica7 12349579 YP_005771269.1 CDS HPSA_03315 NC_017361.1 682454 683482 D hypothetical protein 682454..683482 Helicobacter pylori SouthAfrica7 12349580 YP_005771270.1 CDS HPSA_03320 NC_017361.1 683475 683861 D COG0818 Diacylglycerol kinase; diacylglycerol kinase 683475..683861 Helicobacter pylori SouthAfrica7 12349581 YP_005771271.1 CDS HPSA_03325 NC_017361.1 683881 686373 D COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 683881..686373 Helicobacter pylori SouthAfrica7 12349582 YP_005771272.1 CDS HPSA_03330 NC_017361.1 686373 686846 D hypothetical protein 686373..686846 Helicobacter pylori SouthAfrica7 12349583 YP_005771273.1 CDS HPSA_03335 NC_017361.1 686843 687988 D COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator 686843..687988 Helicobacter pylori SouthAfrica7 12349584 YP_005771274.1 CDS HPSA_03340 NC_017361.1 688108 688383 D hypothetical protein 688108..688383 Helicobacter pylori SouthAfrica7 12349585 YP_005771275.1 CDS HPSA_03345 NC_017361.1 688466 688930 D hypothetical protein 688466..688930 Helicobacter pylori SouthAfrica7 12349586 YP_005771276.1 CDS HPSA_03350 NC_017361.1 688935 689054 D hypothetical protein 688935..689054 Helicobacter pylori SouthAfrica7 12349587 YP_005771277.1 CDS HPSA_03355 NC_017361.1 689253 689417 R hypothetical protein complement(689253..689417) Helicobacter pylori SouthAfrica7 12349588 YP_005771278.1 CDS uvrA NC_017361.1 689544 692369 R COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A complement(689544..692369) Helicobacter pylori SouthAfrica7 12349589 YP_005771279.1 CDS HPSA_03365 NC_017361.1 692534 693355 D outer membrane protein (omp15) 692534..693355 Helicobacter pylori SouthAfrica7 12349590 YP_005771280.1 CDS HPSA_03370 NC_017361.1 693419 693574 R hypothetical protein complement(693419..693574) Helicobacter pylori SouthAfrica7 12349591 YP_005771281.1 CDS mraW NC_017361.1 693533 694459 D COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 693533..694459 Helicobacter pylori SouthAfrica7 12349592 YP_005771282.1 CDS HPSA_03380 NC_017361.1 694467 694811 D hypothetical protein 694467..694811 Helicobacter pylori SouthAfrica7 12349593 YP_005771283.1 CDS HPSA_03385 NC_017361.1 694801 694977 D hypothetical protein 694801..694977 Helicobacter pylori SouthAfrica7 12349594 YP_005771284.1 CDS HPSA_03390 NC_017361.1 695159 696055 D COG1912 Uncharacterized conserved protein; hypothetical protein 695159..696055 Helicobacter pylori SouthAfrica7 12349595 YP_005771285.1 CDS HPSA_03395 NC_017361.1 696336 698312 D putative outer membrane protein 696336..698312 Helicobacter pylori SouthAfrica7 12349596 YP_005771286.1 CDS HPSA_03400 NC_017361.1 698439 698531 R hypothetical protein complement(698439..698531) Helicobacter pylori SouthAfrica7 12349597 YP_005771287.1 CDS HPSA_03405 NC_017361.1 698517 699737 D COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 698517..699737 Helicobacter pylori SouthAfrica7 12349598 YP_005771288.1 CDS HPSA_03410 NC_017361.1 699877 700596 D COG3177 Uncharacterized conserved protein; Fic family protein 699877..700596 Helicobacter pylori SouthAfrica7 12349599 YP_005771289.1 CDS HPSA_03415 NC_017361.1 700610 701854 R COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 complement(700610..701854) Helicobacter pylori SouthAfrica7 12349600 YP_005771290.1 CDS HPSA_03420 NC_017361.1 701857 702579 R COG1137 ABC-type (unclassified) transport system, ATPase component; ABC transporter ATP-binding protein complement(701857..702579) Helicobacter pylori SouthAfrica7 12349601 YP_005771291.1 CDS HPSA_03425 NC_017361.1 702672 702992 R COG0802 Predicted ATPase or kinase; hypothetical protein complement(702672..702992) Helicobacter pylori SouthAfrica7 12349602 YP_005771292.1 CDS HPSA_03430 NC_017361.1 702989 704773 R COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau complement(702989..704773) Helicobacter pylori SouthAfrica7 12349603 YP_005771293.1 CDS HPSA_03435 NC_017361.1 704843 705475 R COG1279 Lysine efflux permease; hypothetical protein complement(704843..705475) Helicobacter pylori SouthAfrica7 12349604 YP_005771294.1 CDS HPSA_03440 NC_017361.1 705724 706146 D hypothetical protein 705724..706146 Helicobacter pylori SouthAfrica7 12349605 YP_005771295.1 CDS HPSA_03445 NC_017361.1 706175 706633 D hypothetical protein 706175..706633 Helicobacter pylori SouthAfrica7 12349606 YP_005771296.1 CDS HPSA_03450 NC_017361.1 706825 707268 D hypothetical protein 706825..707268 Helicobacter pylori SouthAfrica7 12349607 YP_005771297.1 CDS HPSA_03455 NC_017361.1 707313 708308 R COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II complement(707313..708308) Helicobacter pylori SouthAfrica7 12349608 YP_005771298.1 CDS HPSA_03460 NC_017361.1 708396 709724 D COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 708396..709724 Helicobacter pylori SouthAfrica7 12349609 YP_005771299.1 CDS HPSA_03465 NC_017361.1 709801 711756 R Outer membrane protein HopP complement(709801..711756) Helicobacter pylori SouthAfrica7 12349610 YP_005771300.1 CDS HPSA_03470 NC_017361.1 712003 712920 R putative Outer membrane protein complement(712003..712920) Helicobacter pylori SouthAfrica7 12349611 YP_005771301.1 CDS HPSA_03475 NC_017361.1 712890 713876 R COG0042 tRNA-dihydrouridine synthase; putative transcriptional regulator complement(712890..713876) Helicobacter pylori SouthAfrica7 12349612 YP_005771302.1 CDS HPSA_03480 NC_017361.1 713967 714983 R COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthase complement(713967..714983) Helicobacter pylori SouthAfrica7 12349613 YP_005771303.1 CDS HPSA_03485 NC_017361.1 715020 716087 R hypothetical protein complement(715020..716087) Helicobacter pylori SouthAfrica7 12349614 YP_005771304.1 CDS HPSA_03490 NC_017361.1 716096 716401 R hypothetical protein complement(716096..716401) Helicobacter pylori SouthAfrica7 12349615 YP_005771305.1 CDS HPSA_03495 NC_017361.1 716493 718205 R COG1160 Predicted GTPases; hypothetical protein complement(716493..718205) Helicobacter pylori SouthAfrica7 12349616 YP_005771306.1 CDS HPSA_03500 NC_017361.1 718198 720291 R COG2262 GTPases; hypothetical protein complement(718198..720291) Helicobacter pylori SouthAfrica7 12349617 YP_005771307.1 CDS HPSA_03505 NC_017361.1 720267 720365 R hypothetical protein complement(720267..720365) Helicobacter pylori SouthAfrica7 12349618 YP_005771308.1 CDS HPSA_03510 NC_017361.1 720401 721717 R COG0621 2-methylthioadenine synthetase; putative 2-methylthioadenine synthetase complement(720401..721717) Helicobacter pylori SouthAfrica7 12349619 YP_005771309.1 CDS HPSA_03515 NC_017361.1 721719 722180 R COG2236 Predicted phosphoribosyltransferases; putative nucleotide phosphoribosyltransferase complement(721719..722180) Helicobacter pylori SouthAfrica7 12349620 YP_005771310.1 CDS HPSA_03520 NC_017361.1 722189 723298 R COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; putative aminotransferase complement(722189..723298) Helicobacter pylori SouthAfrica7 12349621 YP_005771311.1 CDS HPSA_03525 NC_017361.1 723445 723921 D COG1267 Phosphatidylglycerophosphatase A and related proteins; hypothetical protein 723445..723921 Helicobacter pylori SouthAfrica7 12349622 YP_005771312.1 CDS ddl NC_017361.1 723998 725041 D COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 723998..725041 Helicobacter pylori SouthAfrica7 12349623 YP_005771313.1 CDS HPSA_03535 NC_017361.1 725041 725766 D COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 725041..725766 Helicobacter pylori SouthAfrica7 12349624 YP_005771314.1 CDS HPSA_03540 NC_017361.1 725753 727234 D COG0770 UDP-N-acetylmuramyl pentapeptide synthase; D-alanyl-D-alanine-adding enzyme 725753..727234 Helicobacter pylori SouthAfrica7 12349625 YP_005771315.1 CDS HPSA_03545 NC_017361.1 727244 727729 D COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad (HIT) family protein 727244..727729 Helicobacter pylori SouthAfrica7 12349626 YP_005771316.1 CDS HPSA_03550 NC_017361.1 727821 728750 D COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 727821..728750 Helicobacter pylori SouthAfrica7 12349627 YP_005771317.1 CDS HPSA_03555 NC_017361.1 728811 729953 R COG0772 Bacterial cell division membrane protein; rod shape-determining protein RodA complement(728811..729953) Helicobacter pylori SouthAfrica7 12349629 YP_005771318.1 CDS HPSA_03575 NC_017361.1 731322 732302 D COG0564 Pseudouridylate synthases, 23S RNA-specific; pseudouridine synthase 731322..732302 Helicobacter pylori SouthAfrica7 12349630 YP_005771319.1 CDS HPSA_03580 NC_017361.1 732265 733512 D COG3401 Fibronectin type 3 domain-containing protein; hypothetical protein 732265..733512 Helicobacter pylori SouthAfrica7 12349631 YP_005771320.1 CDS HPSA_03585 NC_017361.1 733524 734720 D COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 733524..734720 Helicobacter pylori SouthAfrica7 12349632 YP_005771321.1 CDS HPSA_03590 NC_017361.1 734695 735366 D COG1136 ABC-type antimicrobial peptide transport system, ATPase component; cell division protein FtsE 734695..735366 Helicobacter pylori SouthAfrica7 12349633 YP_005771322.1 CDS HPSA_03605 NC_017361.1 736151 737353 D COG4942 Membrane-bound metallopeptidase; hypothetical protein 736151..737353 Helicobacter pylori SouthAfrica7 12349634 YP_005771323.1 CDS HPSA_03610 NC_017361.1 737439 737816 D COG1334 Uncharacterized flagellar protein FlaG; flagellar protein FlaG 737439..737816 Helicobacter pylori SouthAfrica7 12349635 YP_005771324.1 CDS fliD NC_017361.1 737833 739890 D COG1345 Flagellar capping protein; flagellar capping protein 737833..739890 Helicobacter pylori SouthAfrica7 12349636 YP_005771325.1 CDS fliS NC_017361.1 739935 740315 D COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 739935..740315 Helicobacter pylori SouthAfrica7 12349637 YP_005771326.1 CDS HPSA_03625 NC_017361.1 740302 740541 D hypothetical protein 740302..740541 Helicobacter pylori SouthAfrica7 12349638 YP_005771327.1 CDS HPSA_03630 NC_017361.1 740594 741265 D COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; hypothetical protein 740594..741265 Helicobacter pylori SouthAfrica7 12349639 YP_005771328.1 CDS HPSA_03635 NC_017361.1 741267 741413 D hypothetical protein 741267..741413 Helicobacter pylori SouthAfrica7 12349640 YP_005771329.1 CDS HPSA_03640 NC_017361.1 741417 742295 D COG0388 Predicted amidohydrolase; carbon-nitrogen hydrolase 741417..742295 Helicobacter pylori SouthAfrica7 12349641 YP_005771330.1 CDS HPSA_03645 NC_017361.1 742419 743732 D COG2056 Predicted permease; hypothetical protein 742419..743732 Helicobacter pylori SouthAfrica7 12349642 YP_005771331.1 CDS HPSA_03650 NC_017361.1 743795 745048 D COG0534 Na+-driven multidrug efflux pump; hypothetical protein 743795..745048 Helicobacter pylori SouthAfrica7 12349643 YP_005771332.1 CDS HPSA_03655 NC_017361.1 745055 746566 R COG1418 Predicted HD superfamily hydrolase; phosphodiesterase complement(745055..746566) Helicobacter pylori SouthAfrica7 12349644 YP_005771333.1 CDS HPSA_03660 NC_017361.1 746544 747185 R COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein complement(746544..747185) Helicobacter pylori SouthAfrica7 12349645 YP_005771334.1 CDS HPSA_03665 NC_017361.1 747310 747861 D hypothetical protein 747310..747861 Helicobacter pylori SouthAfrica7 12349646 YP_005771335.1 CDS HPSA_03670 NC_017361.1 747867 748748 D COG0552 Signal recognition particle GTPase; signal recognition particle receptor 747867..748748 Helicobacter pylori SouthAfrica7 12349647 YP_005771336.1 CDS HPSA_03675 NC_017361.1 748841 749161 R COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein complement(748841..749161) Helicobacter pylori SouthAfrica7 12349648 YP_005771337.1 CDS HPSA_03680 NC_017361.1 749202 750194 R hypothetical protein complement(749202..750194) Helicobacter pylori SouthAfrica7 12349649 YP_005771338.1 CDS HPSA_03685 NC_017361.1 750205 751749 R hypothetical protein complement(750205..751749) Helicobacter pylori SouthAfrica7 12349650 YP_005771339.1 CDS moaA NC_017361.1 751991 752956 R COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A complement(751991..752956) Helicobacter pylori SouthAfrica7 12349651 YP_005771340.1 CDS HPSA_03695 NC_017361.1 753044 753649 D COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 753044..753649 Helicobacter pylori SouthAfrica7 12349652 YP_005771341.1 CDS flhB NC_017361.1 753642 754718 D COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB 753642..754718 Helicobacter pylori SouthAfrica7 12349653 YP_005771342.1 CDS HPSA_03705 NC_017361.1 754807 755544 R hypothetical protein complement(754807..755544) Helicobacter pylori SouthAfrica7 12349654 YP_005771343.1 CDS HPSA_03710 NC_017361.1 755563 756912 R COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(755563..756912) Helicobacter pylori SouthAfrica7 12349655 YP_005771344.1 CDS HPSA_03715 NC_017361.1 756919 758010 R COG2070 Dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase complement(756919..758010) Helicobacter pylori SouthAfrica7 12349656 YP_005771345.1 CDS HPSA_03720 NC_017361.1 758027 759235 R COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase complement(758027..759235) Helicobacter pylori SouthAfrica7 12349657 YP_005771346.1 CDS HPSA_03725 NC_017361.1 759258 761585 R COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase complement(759258..761585) Helicobacter pylori SouthAfrica7 12349658 YP_005771347.1 CDS HPSA_03730 NC_017361.1 761572 761796 R COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega complement(761572..761796) Helicobacter pylori SouthAfrica7 12349659 YP_005771348.1 CDS pyrH NC_017361.1 762051 762773 R COG0528 Uridylate kinase; uridylate kinase complement(762051..762773) Helicobacter pylori SouthAfrica7 12349660 YP_005771349.1 CDS HPSA_03740 NC_017361.1 762872 763555 R COG1427 Predicted periplasmic solute-binding protein; hypothetical protein complement(762872..763555) Helicobacter pylori SouthAfrica7 12349661 YP_005771350.1 CDS HPSA_03745 NC_017361.1 763687 766245 D COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 763687..766245 Helicobacter pylori SouthAfrica7 12349662 YP_005771351.1 CDS HPSA_03750 NC_017361.1 766316 766582 D hypothetical protein 766316..766582 Helicobacter pylori SouthAfrica7 12349663 YP_005771352.1 CDS HPSA_03755 NC_017361.1 766832 768130 D hypothetical protein 766832..768130 Helicobacter pylori SouthAfrica7 12349664 YP_005771353.1 CDS HPSA_03760 NC_017361.1 768224 769591 D hypothetical protein 768224..769591 Helicobacter pylori SouthAfrica7 12349665 YP_005771354.1 CDS HPSA_03765 NC_017361.1 769599 770126 R COG5022 Myosin heavy chain; hypothetical protein complement(769599..770126) Helicobacter pylori SouthAfrica7 12349666 YP_005771355.1 CDS lolA NC_017361.1 770611 771165 R COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein complement(770611..771165) Helicobacter pylori SouthAfrica7 12349667 YP_005771356.1 CDS HPSA_03775 NC_017361.1 771312 773909 D COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 771312..773909 Helicobacter pylori SouthAfrica7 12349668 YP_005771357.1 CDS HPSA_03780 NC_017361.1 773899 775131 D COG4591 ABC-type transport system, involved in lipoprotein release, permease component; lipoprotein release system transmembrane protein 773899..775131 Helicobacter pylori SouthAfrica7 12349669 YP_005771358.1 CDS HPSA_03785 NC_017361.1 775411 776910 D outer membrane protein HofF 775411..776910 Helicobacter pylori SouthAfrica7 12349670 YP_005771359.1 CDS HPSA_03790 NC_017361.1 777094 777258 R hypothetical protein complement(777094..777258) Helicobacter pylori SouthAfrica7 12349671 YP_005771360.1 CDS HPSA_03805 NC_017361.1 778153 780213 R COG2217 Cation transport ATPase; putative heavy-metal cation-transporting P-type ATPase complement(778153..780213) Helicobacter pylori SouthAfrica7 12349672 YP_005771361.1 CDS HPSA_03810 NC_017361.1 780237 781757 R COG0606 Predicted ATPase with chaperone activity; sigma-54 interacting protein complement(780237..781757) Helicobacter pylori SouthAfrica7 12349673 YP_005771362.1 CDS def NC_017361.1 781763 782287 R COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase complement(781763..782287) Helicobacter pylori SouthAfrica7 12349674 YP_005771363.1 CDS clpP NC_017361.1 782292 782879 R COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit complement(782292..782879) Helicobacter pylori SouthAfrica7 12349675 YP_005771364.1 CDS tig NC_017361.1 782899 784254 R COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor complement(782899..784254) Helicobacter pylori SouthAfrica7 12349676 YP_005771365.1 CDS HPSA_03830 NC_017361.1 784367 785203 R outer membrane protein (omp18) complement(784367..785203) Helicobacter pylori SouthAfrica7 12349677 YP_005771366.1 CDS HPSA_03835 NC_017361.1 785225 786007 R flagellar sheath adhesin complement(785225..786007) Helicobacter pylori SouthAfrica7 12349678 YP_005771367.1 CDS moaC NC_017361.1 786128 786604 R COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC complement(786128..786604) Helicobacter pylori SouthAfrica7 12349679 YP_005771368.1 CDS mogA NC_017361.1 786615 787145 R COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA complement(786615..787145) Helicobacter pylori SouthAfrica7 12349680 YP_005771369.1 CDS HPSA_03850 NC_017361.1 787157 787594 R COG0314 Molybdopterin converting factor, large subunit; molybdopterin converting factor subunit 2 complement(787157..787594) Helicobacter pylori SouthAfrica7 12349681 YP_005771370.1 CDS HPSA_03855 NC_017361.1 787595 787816 R COG1977 Molybdopterin converting factor, small subunit; molybdopterin converting factor subunit 1 complement(787595..787816) Helicobacter pylori SouthAfrica7 12349682 YP_005771371.1 CDS ribA NC_017361.1 787892 788470 R COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II complement(787892..788470) Helicobacter pylori SouthAfrica7 12349683 YP_005771372.1 CDS HPSA_03865 NC_017361.1 788573 788854 R hypothetical protein complement(788573..788854) Helicobacter pylori SouthAfrica7 12349684 YP_005771373.1 CDS HPSA_03870 NC_017361.1 789811 790056 D hypothetical protein 789811..790056 Helicobacter pylori SouthAfrica7 12349685 YP_005771374.1 CDS HPSA_03875 NC_017361.1 790046 791080 R COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(790046..791080) Helicobacter pylori SouthAfrica7 12349686 YP_005771375.1 CDS HPSA_03880 NC_017361.1 791291 792142 R COG3306 Glycosyltransferase involved in LPS biosynthesis; lipooligosaccharide 5G8 epitope biosynthesis-associated protein complement(791291..792142) Helicobacter pylori SouthAfrica7 12349687 YP_005771376.1 CDS HPSA_03885 NC_017361.1 792224 792844 D COG1451 Predicted metal-dependent hydrolase; metalloprotease 792224..792844 Helicobacter pylori SouthAfrica7 12349688 YP_005771377.1 CDS HPSA_03890 NC_017361.1 792855 795227 R COG4772 Outer membrane receptor for Fe3+-dicitrate; iron complex outermembrane recepter protein complement(792855..795227) Helicobacter pylori SouthAfrica7 12349689 YP_005771378.1 CDS acpS NC_017361.1 795422 795781 R COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase complement(795422..795781) Helicobacter pylori SouthAfrica7 12349690 YP_005771379.1 CDS fliL NC_017361.1 795788 796339 R COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL complement(795788..796339) Helicobacter pylori SouthAfrica7 12349691 YP_005771380.1 CDS HPSA_03905 NC_017361.1 796348 796950 R COG0742 N6-adenine-specific methylase; putative N-6 adenine methyltransferase complement(796348..796950) Helicobacter pylori SouthAfrica7 12349692 YP_005771381.1 CDS HPSA_03910 NC_017361.1 796929 797264 R hypothetical protein complement(796929..797264) Helicobacter pylori SouthAfrica7 12349693 YP_005771382.1 CDS HPSA_03915 NC_017361.1 797401 797508 R hypothetical protein complement(797401..797508) Helicobacter pylori SouthAfrica7 12349694 YP_005771383.1 CDS HPSA_03920 NC_017361.1 797725 798726 R COG1565 Uncharacterized conserved protein; hypothetical protein complement(797725..798726) Helicobacter pylori SouthAfrica7 12349695 YP_005771384.1 CDS HPSA_03925 NC_017361.1 798853 799470 D COG0491 Zn-dependent hydrolases, including glyoxylases; hypothetical protein 798853..799470 Helicobacter pylori SouthAfrica7 12349696 YP_005771385.1 CDS HPSA_03930 NC_017361.1 799471 800238 D COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamine biosynthesis protein 799471..800238 Helicobacter pylori SouthAfrica7 12349697 YP_005771386.1 CDS HPSA_03935 NC_017361.1 800254 801027 D COG1291 Flagellar motor component; flagellar motor protein MotA 800254..801027 Helicobacter pylori SouthAfrica7 12349698 YP_005771387.1 CDS motB NC_017361.1 801030 801803 D COG1360 Flagellar motor protein; flagellar motor protein MotB 801030..801803 Helicobacter pylori SouthAfrica7 12349699 YP_005771388.1 CDS HPSA_03945 NC_017361.1 801809 802246 D hypothetical protein 801809..802246 Helicobacter pylori SouthAfrica7 12349700 YP_005771389.1 CDS HPSA_03950 NC_017361.1 802316 803971 D COG1174 ABC-type proline/glycine betaine transport systems, permease component; osmoprotection protein 802316..803971 Helicobacter pylori SouthAfrica7 12349701 YP_005771390.1 CDS HPSA_03955 NC_017361.1 803974 804624 D COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; osmoprotection ATP-binding protein 803974..804624 Helicobacter pylori SouthAfrica7 12349702 YP_005771391.1 CDS HPSA_03960 NC_017361.1 804630 804809 R hypothetical protein complement(804630..804809) Helicobacter pylori SouthAfrica7 12349703 YP_005771392.1 CDS HPSA_03965 NC_017361.1 804864 805262 D hypothetical protein 804864..805262 Helicobacter pylori SouthAfrica7 12349704 YP_005771393.1 CDS uvrC NC_017361.1 805263 807047 D COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C 805263..807047 Helicobacter pylori SouthAfrica7 12349705 YP_005771394.1 CDS HPSA_03975 NC_017361.1 807058 808323 D COG0460 Homoserine dehydrogenase; homoserine dehydrogenase 807058..808323 Helicobacter pylori SouthAfrica7 12349706 YP_005771395.1 CDS HPSA_03980 NC_017361.1 808324 808668 D COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 808324..808668 Helicobacter pylori SouthAfrica7 12349707 YP_005771396.1 CDS HPSA_03985 NC_017361.1 808760 809080 D COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 808760..809080 Helicobacter pylori SouthAfrica7 12349708 YP_005771397.1 CDS HPSA_03990 NC_017361.1 809086 810021 D COG0492 Thioredoxin reductase; thioredoxin reductase 809086..810021 Helicobacter pylori SouthAfrica7 12349709 YP_005771398.1 CDS HPSA_03995 NC_017361.1 810276 810368 D hypothetical protein 810276..810368 Helicobacter pylori SouthAfrica7 12349710 YP_005771399.1 CDS HPSA_04000 NC_017361.1 810387 811208 D COG3306 Glycosyltransferase involved in LPS biosynthesis; pbeta-1,4-galactosyltransferase 810387..811208 Helicobacter pylori SouthAfrica7 12349711 YP_005771400.1 CDS HPSA_04005 NC_017361.1 811427 811675 R COG0724 RNA-binding proteins (RRM domain); Nucleotide binding protein complement(811427..811675) Helicobacter pylori SouthAfrica7 12349712 YP_005771401.1 CDS HPSA_04010 NC_017361.1 811829 811984 D hypothetical protein 811829..811984 Helicobacter pylori SouthAfrica7 12349713 YP_005771402.1 CDS HPSA_04015 NC_017361.1 811981 812094 R hypothetical protein complement(811981..812094) Helicobacter pylori SouthAfrica7 12349714 YP_005771403.1 CDS HPSA_04020 NC_017361.1 812389 813069 R COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A complement(812389..813069) Helicobacter pylori SouthAfrica7 12349715 YP_005771404.1 CDS HPSA_04025 NC_017361.1 813191 814636 R COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase complement(813191..814636) Helicobacter pylori SouthAfrica7 12349716 YP_005771405.1 CDS gatA NC_017361.1 814646 816007 R COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(814646..816007) Helicobacter pylori SouthAfrica7 12349717 YP_005771406.1 CDS coaE NC_017361.1 816065 816655 R COG0237 Dephospho-CoA kinase; dephospho-CoA kinase complement(816065..816655) Helicobacter pylori SouthAfrica7 12349718 YP_005771407.1 CDS speE NC_017361.1 816657 817445 R COG0421 Spermidine synthase; spermidine synthase complement(816657..817445) Helicobacter pylori SouthAfrica7 12349719 YP_005771408.1 CDS HPSA_04045 NC_017361.1 817520 818395 R hypothetical protein complement(817520..818395) Helicobacter pylori SouthAfrica7 12349720 YP_005771409.1 CDS engA NC_017361.1 818472 819854 D COG1160 Predicted GTPases; GTP-binding protein EngA 818472..819854 Helicobacter pylori SouthAfrica7 12349721 YP_005771410.1 CDS HPSA_04055 NC_017361.1 819996 820280 D COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 819996..820280 Helicobacter pylori SouthAfrica7 12349722 YP_005771411.1 CDS HPSA_04065 NC_017361.1 820982 821587 D COG3018 Uncharacterized protein conserved in bacteria; hypothetical protein 820982..821587 Helicobacter pylori SouthAfrica7 12349724 YP_005771412.1 CDS HPSA_04070 NC_017361.1 821606 822223 D hypothetical protein 821606..822223 Helicobacter pylori SouthAfrica7 12349725 YP_005771413.1 CDS HPSA_04085 NC_017361.1 824004 824987 D COG1086 Predicted nucleoside-diphosphate sugar epimerases; flaA1 protein 824004..824987 Helicobacter pylori SouthAfrica7 12349726 YP_005771414.1 CDS HPSA_04090 NC_017361.1 824984 826261 D COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 824984..826261 Helicobacter pylori SouthAfrica7 12349727 YP_005771415.1 CDS HPSA_04095 NC_017361.1 826261 826998 D hypothetical protein 826261..826998 Helicobacter pylori SouthAfrica7 12349728 YP_005771416.1 CDS thiE NC_017361.1 827379 828041 R COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(827379..828041) Helicobacter pylori SouthAfrica7 12349729 YP_005771417.1 CDS HPSA_04105 NC_017361.1 828034 828843 R COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; thiamine biosynthesis protein complement(828034..828843) Helicobacter pylori SouthAfrica7 12349730 YP_005771418.1 CDS HPSA_04110 NC_017361.1 828840 829619 R COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase complement(828840..829619) Helicobacter pylori SouthAfrica7 12349731 YP_005771419.1 CDS HPSA_04125 NC_017361.1 830684 831559 D type II restriction endonuclease 830684..831559 Helicobacter pylori SouthAfrica7 12349732 YP_005771420.1 CDS HPSA_04130 NC_017361.1 831730 832416 D COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 831730..832416 Helicobacter pylori SouthAfrica7 12349733 YP_005771421.1 CDS HPSA_04135 NC_017361.1 832439 833401 R COG2958 Uncharacterized protein conserved in bacteria; Excinuclease ATPase subunit complement(832439..833401) Helicobacter pylori SouthAfrica7 12349734 YP_005771422.1 CDS HPSA_04140 NC_017361.1 833398 834999 R COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein complement(833398..834999) Helicobacter pylori SouthAfrica7 12349735 YP_005771423.1 CDS HPSA_04145 NC_017361.1 835253 836230 D COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 835253..836230 Helicobacter pylori SouthAfrica7 12349736 YP_005771424.1 CDS HPSA_04150 NC_017361.1 836387 836965 R COG0279 Phosphoheptose isomerase; phosphoheptose isomerase complement(836387..836965) Helicobacter pylori SouthAfrica7 12349737 YP_005771425.1 CDS HPSA_04155 NC_017361.1 836958 838349 R COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; ADP-heptose synthase complement(836958..838349) Helicobacter pylori SouthAfrica7 12349738 YP_005771426.1 CDS HPSA_04160 NC_017361.1 838346 839338 R COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-glyceromanno-heptose 6-epimerase complement(838346..839338) Helicobacter pylori SouthAfrica7 12349739 YP_005771427.1 CDS HPSA_04165 NC_017361.1 839347 839868 R COG0241 Histidinol phosphatase and related phosphatases; putative histinol phosphatase complement(839347..839868) Helicobacter pylori SouthAfrica7 12349740 YP_005771428.1 CDS HPSA_04170 NC_017361.1 839858 840610 R COG2836 Uncharacterized conserved protein; hypothetical protein complement(839858..840610) Helicobacter pylori SouthAfrica7 12349741 YP_005771429.1 CDS HPSA_04175 NC_017361.1 840601 841272 R COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor; pantothenate kinase complement(840601..841272) Helicobacter pylori SouthAfrica7 12349742 YP_005771430.1 CDS HPSA_04180 NC_017361.1 841277 842863 R hypothetical protein complement(841277..842863) Helicobacter pylori SouthAfrica7 12349743 YP_005771431.1 CDS HPSA_04185 NC_017361.1 842868 843524 R hypothetical protein complement(842868..843524) Helicobacter pylori SouthAfrica7 12349744 YP_005771432.1 CDS dut NC_017361.1 843521 843958 R COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(843521..843958) Helicobacter pylori SouthAfrica7 12349745 YP_005771433.1 CDS greA NC_017361.1 843948 844442 R COG0782 Transcription elongation factor; transcription elongation factor GreA complement(843948..844442) Helicobacter pylori SouthAfrica7 12349746 YP_005771434.1 CDS HPSA_04200 NC_017361.1 844483 845565 R COG0763 Lipid A disaccharide synthetase; ipid-A-disaccharide synthase complement(844483..845565) Helicobacter pylori SouthAfrica7 12349747 YP_005771435.1 CDS HPSA_04205 NC_017361.1 845565 846023 R hypothetical protein complement(845565..846023) Helicobacter pylori SouthAfrica7 12349748 YP_005771436.1 CDS hypA NC_017361.1 846030 846383 R COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein complement(846030..846383) Helicobacter pylori SouthAfrica7 12349749 YP_005771437.1 CDS flgE NC_017361.1 846441 848597 R COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE complement(846441..848597) Helicobacter pylori SouthAfrica7 12349750 YP_005771438.1 CDS HPSA_04220 NC_017361.1 848629 848799 D hypothetical protein 848629..848799 Helicobacter pylori SouthAfrica7 12349751 YP_005771439.1 CDS HPSA_04225 NC_017361.1 848814 849548 R COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase complement(848814..849548) Helicobacter pylori SouthAfrica7 12349752 YP_005771440.1 CDS HPSA_04230 NC_017361.1 849875 850204 D COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; alkylphosphonate uptake protein 849875..850204 Helicobacter pylori SouthAfrica7 12349753 YP_005771441.1 CDS HPSA_04235 NC_017361.1 850244 850459 R hypothetical protein complement(850244..850459) Helicobacter pylori SouthAfrica7 12349754 YP_005771442.1 CDS HPSA_04240 NC_017361.1 850543 851418 R hypothetical protein complement(850543..851418) Helicobacter pylori SouthAfrica7 12349755 YP_005771443.1 CDS HPSA_04245 NC_017361.1 851564 853081 R COG0753 Catalase; catalase complement(851564..853081) Helicobacter pylori SouthAfrica7 12349756 YP_005771444.1 CDS HPSA_04250 NC_017361.1 853401 855776 D COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 853401..855776 Helicobacter pylori SouthAfrica7 12349757 YP_005771445.1 CDS ruvC NC_017361.1 855777 856250 R COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase complement(855777..856250) Helicobacter pylori SouthAfrica7 12349758 YP_005771446.1 CDS HPSA_04260 NC_017361.1 856374 857099 D COG1432 Uncharacterized conserved protein; hypothetical protein 856374..857099 Helicobacter pylori SouthAfrica7 12349759 YP_005771447.1 CDS HPSA_04265 NC_017361.1 857246 857392 R hypothetical protein complement(857246..857392) Helicobacter pylori SouthAfrica7 12349760 YP_005771448.1 CDS ruvA NC_017361.1 857911 858462 R COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA complement(857911..858462) Helicobacter pylori SouthAfrica7 12349761 YP_005771449.1 CDS HPSA_04275 NC_017361.1 858492 860327 R hypothetical protein complement(858492..860327) Helicobacter pylori SouthAfrica7 12349762 YP_005771450.1 CDS HPSA_04280 NC_017361.1 860421 861881 D COG0728 Uncharacterized membrane protein, putative virulence factor; virulence factor MviN 860421..861881 Helicobacter pylori SouthAfrica7 12349763 YP_005771451.1 CDS cysS NC_017361.1 861882 863279 D COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 861882..863279 Helicobacter pylori SouthAfrica7 12349764 YP_005771452.1 CDS HPSA_04300 NC_017361.1 867621 868682 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein complement(867621..868682) Helicobacter pylori SouthAfrica7 12349765 YP_005771453.1 CDS HPSA_04305 NC_017361.1 868800 869567 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron(III) dicitrate transporter, ATP-binding protein complement(868800..869567) Helicobacter pylori SouthAfrica7 12349766 YP_005771454.1 CDS HPSA_04310 NC_017361.1 869567 870547 R COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron(III) ABC transporter permease complement(869567..870547) Helicobacter pylori SouthAfrica7 12349767 YP_005771455.1 CDS HPSA_04315 NC_017361.1 870540 871394 R COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short-chain oxidoreductase complement(870540..871394) Helicobacter pylori SouthAfrica7 12349768 YP_005771456.1 CDS HPSA_04320 NC_017361.1 871534 872058 D COG1607 Acyl-CoA hydrolase; hypothetical protein 871534..872058 Helicobacter pylori SouthAfrica7 12349769 YP_005771457.1 CDS HPSA_04325 NC_017361.1 872254 872538 R COG3309 Uncharacterized virulence-associated protein D; virulence associated protein D (vapD) complement(872254..872538) Helicobacter pylori SouthAfrica7 12349770 YP_005771458.1 CDS HPSA_04330 NC_017361.1 872519 872899 R hypothetical protein complement(872519..872899) Helicobacter pylori SouthAfrica7 12349771 YP_005771459.1 CDS HPSA_04335 NC_017361.1 873157 873345 R hypothetical protein complement(873157..873345) Helicobacter pylori SouthAfrica7 12349772 YP_005771460.1 CDS HPSA_04340 NC_017361.1 873602 875827 R outer membrane protein BabA complement(873602..875827) Helicobacter pylori SouthAfrica7 12349773 YP_005771461.1 CDS HPSA_04345 NC_017361.1 875826 875924 D hypothetical protein 875826..875924 Helicobacter pylori SouthAfrica7 12349774 YP_005771462.1 CDS HPSA_04350 NC_017361.1 875938 876120 D hypothetical protein 875938..876120 Helicobacter pylori SouthAfrica7 12349775 YP_005771463.1 CDS HPSA_04360 NC_017361.1 877039 878151 R COG0409 Hydrogenase maturation factor; hydrogenase expression/formation protein HypD complement(877039..878151) Helicobacter pylori SouthAfrica7 12349778 YP_005771464.1 CDS HPSA_04365 NC_017361.1 878166 878402 R COG0298 Hydrogenase maturation factor; hydrogenase expression/formation protein complement(878166..878402) Helicobacter pylori SouthAfrica7 12349779 YP_005771465.1 CDS HPSA_04370 NC_017361.1 878402 879130 R COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase/urease nickel incorporation protein hypB complement(878402..879130) Helicobacter pylori SouthAfrica7 12349780 YP_005771466.1 CDS HPSA_04375 NC_017361.1 879242 879364 R hypothetical protein complement(879242..879364) Helicobacter pylori SouthAfrica7 12349781 YP_005771467.1 CDS HPSA_04380 NC_017361.1 879375 879674 R COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein complement(879375..879674) Helicobacter pylori SouthAfrica7 12349782 YP_005771468.1 CDS HPSA_04385 NC_017361.1 879661 880884 R COG0282 Acetate kinase; acetate kinase complement(879661..880884) Helicobacter pylori SouthAfrica7 12349783 YP_005771469.1 CDS HPSA_04390 NC_017361.1 880901 882451 R COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphotransacetylase complement(880901..882451) Helicobacter pylori SouthAfrica7 12349784 YP_005771470.1 CDS HPSA_04395 NC_017361.1 882630 884177 D hypothetical protein 882630..884177 Helicobacter pylori SouthAfrica7 12349785 YP_005771471.1 CDS flgD NC_017361.1 884228 885376 D COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 884228..885376 Helicobacter pylori SouthAfrica7 12349786 YP_005771472.1 CDS flgE NC_017361.1 885373 887190 D COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 885373..887190 Helicobacter pylori SouthAfrica7 12349787 YP_005771473.1 CDS HPSA_04410 NC_017361.1 887242 887823 D restriction endonuclease 887242..887823 Helicobacter pylori SouthAfrica7 12349788 YP_005771474.1 CDS HPSA_04415 NC_017361.1 887833 888972 D COG0827 Adenine-specific DNA methylase; site specific DNA-methyltransferase 887833..888972 Helicobacter pylori SouthAfrica7 12349789 YP_005771475.1 CDS HPSA_04420 NC_017361.1 888982 891000 D COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase 888982..891000 Helicobacter pylori SouthAfrica7 12349790 YP_005771476.1 CDS HPSA_04425 NC_017361.1 892157 893710 D outer membrane protein HopC 892157..893710 Helicobacter pylori SouthAfrica7 12349791 YP_005771477.1 CDS HPSA_04430 NC_017361.1 893732 895333 D Outer membrane protein/porin 893732..895333 Helicobacter pylori SouthAfrica7 12349792 YP_005771478.1 CDS HPSA_04435 NC_017361.1 896512 898056 R outer membrane protein HopG complement(896512..898056) Helicobacter pylori SouthAfrica7 12349793 YP_005771479.1 CDS HPSA_04440 NC_017361.1 898370 900811 R COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein complement(898370..900811) Helicobacter pylori SouthAfrica7 12349794 YP_005771480.1 CDS HPSA_04445 NC_017361.1 900998 901429 R COG0009 Putative translation factor (SUA5); hypothetical protein complement(900998..901429) Helicobacter pylori SouthAfrica7 12349795 YP_005771481.1 CDS carB NC_017361.1 901434 904691 R COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit complement(901434..904691) Helicobacter pylori SouthAfrica7 12349796 YP_005771482.1 CDS HPSA_04455 NC_017361.1 904790 905482 R COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein complement(904790..905482) Helicobacter pylori SouthAfrica7 12349797 YP_005771483.1 CDS HPSA_04460 NC_017361.1 905629 906627 D COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 905629..906627 Helicobacter pylori SouthAfrica7 12349798 YP_005771484.1 CDS HPSA_04465 NC_017361.1 906707 913870 D hypothetical protein 906707..913870 Helicobacter pylori SouthAfrica7 12349799 YP_005771485.1 CDS HPSA_04470 NC_017361.1 913860 915035 D hypothetical protein 913860..915035 Helicobacter pylori SouthAfrica7 12349800 YP_005771486.1 CDS HPSA_04475 NC_017361.1 915095 915301 R COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; 4-oxalocrotonate tautomerase complement(915095..915301) Helicobacter pylori SouthAfrica7 12349801 YP_005771487.1 CDS recR NC_017361.1 915417 915998 D COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 915417..915998 Helicobacter pylori SouthAfrica7 12349802 YP_005771488.1 CDS truD NC_017361.1 915995 917140 D COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D 915995..917140 Helicobacter pylori SouthAfrica7 12349803 YP_005771489.1 CDS HPSA_04490 NC_017361.1 917130 918059 D COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX 917130..918059 Helicobacter pylori SouthAfrica7 12349804 YP_005771490.1 CDS folE NC_017361.1 918060 918602 D COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I 918060..918602 Helicobacter pylori SouthAfrica7 12349805 YP_005771491.1 CDS HPSA_04500 NC_017361.1 918618 919529 D COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 918618..919529 Helicobacter pylori SouthAfrica7 12349806 YP_005771492.1 CDS surE NC_017361.1 919526 920329 D COG0496 Predicted acid phosphatase; stationary phase survival protein SurE 919526..920329 Helicobacter pylori SouthAfrica7 12349807 YP_005771493.1 CDS HPSA_04510 NC_017361.1 920326 920985 D hypothetical protein 920326..920985 Helicobacter pylori SouthAfrica7 12349808 YP_005771494.1 CDS HPSA_04515 NC_017361.1 920989 921591 D COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 920989..921591 Helicobacter pylori SouthAfrica7 12349809 YP_005771495.1 CDS HPSA_04520 NC_017361.1 921591 922346 D COG0602 Organic radical activating enzymes; hypothetical protein 921591..922346 Helicobacter pylori SouthAfrica7 12349810 YP_005771496.1 CDS HPSA_04525 NC_017361.1 922449 922934 D COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 922449..922934 Helicobacter pylori SouthAfrica7 12349811 YP_005771497.1 CDS HPSA_04530 NC_017361.1 923188 924567 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(923188..924567) Helicobacter pylori SouthAfrica7 12349812 YP_005771498.1 CDS HPSA_04535 NC_017361.1 924755 924889 R hypothetical protein complement(924755..924889) Helicobacter pylori SouthAfrica7 12349813 YP_005771499.1 CDS HPSA_04540 NC_017361.1 924961 925674 R COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease complement(924961..925674) Helicobacter pylori SouthAfrica7 12349814 YP_005771500.1 CDS HPSA_04545 NC_017361.1 925658 926425 R COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; putative polar amino acid transport system substrate-binding protein complement(925658..926425) Helicobacter pylori SouthAfrica7 12349815 YP_005771501.1 CDS HPSA_04550 NC_017361.1 926491 927624 R COG0787 Alanine racemase; alanine racemase complement(926491..927624) Helicobacter pylori SouthAfrica7 12349816 YP_005771502.1 CDS HPSA_04555 NC_017361.1 927631 928983 R COG1115 Na+/alanine symporter; putative amino acid transporter; putative membrane protein complement(927631..928983) Helicobacter pylori SouthAfrica7 12349817 YP_005771503.1 CDS HPSA_04560 NC_017361.1 929022 930254 R COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase complement(929022..930254) Helicobacter pylori SouthAfrica7 12349818 YP_005771504.1 CDS HPSA_04565 NC_017361.1 930280 930657 R COG0251 Putative translation initiation inhibitor, yjgF family; translation initiation inhibitor complement(930280..930657) Helicobacter pylori SouthAfrica7 12349819 YP_005771505.1 CDS HPSA_04570 NC_017361.1 930727 930891 D hypothetical protein 930727..930891 Helicobacter pylori SouthAfrica7 12349820 YP_005771506.1 CDS HPSA_04575 NC_017361.1 931266 931568 D protein tRNA-associated locus protein 931266..931568 Helicobacter pylori SouthAfrica7 12349822 YP_005771507.1 CDS HPSA_04580 NC_017361.1 932103 933593 D COG1757 Na+/H+ antiporter; hypothetical protein 932103..933593 Helicobacter pylori SouthAfrica7 12349826 YP_005771508.1 CDS HPSA_04585 NC_017361.1 933868 934230 D hypothetical protein 933868..934230 Helicobacter pylori SouthAfrica7 12349827 YP_005771509.1 CDS HPSA_04590 NC_017361.1 934790 935866 D COG0582 Integrase; integrase-recombinase protein 934790..935866 Helicobacter pylori SouthAfrica7 12349828 YP_005771510.1 CDS HPSA_04595 NC_017361.1 935930 937132 R hypothetical protein complement(935930..937132) Helicobacter pylori SouthAfrica7 12349829 YP_005771511.1 CDS HPSA_04600 NC_017361.1 937132 938517 R hypothetical protein complement(937132..938517) Helicobacter pylori SouthAfrica7 12349830 YP_005771512.1 CDS HPSA_04605 NC_017361.1 938527 940722 R hypothetical protein complement(938527..940722) Helicobacter pylori SouthAfrica7 12349831 YP_005771513.1 CDS HPSA_04620 NC_017361.1 942095 943102 R hypothetical protein complement(942095..943102) Helicobacter pylori SouthAfrica7 12349832 YP_005771514.1 CDS HPSA_04625 NC_017361.1 943299 951707 D COG0827 Adenine-specific DNA methylase; hypothetical protein 943299..951707 Helicobacter pylori SouthAfrica7 12349833 YP_005771515.1 CDS HPSA_04630 NC_017361.1 951974 952630 D COG1192 ATPases involved in chromosome partitioning; PARA protein 951974..952630 Helicobacter pylori SouthAfrica7 12349834 YP_005771516.1 CDS HPSA_04635 NC_017361.1 952709 952993 D hypothetical protein 952709..952993 Helicobacter pylori SouthAfrica7 12349835 YP_005771517.1 CDS HPSA_04640 NC_017361.1 953020 954192 D hypothetical protein 953020..954192 Helicobacter pylori SouthAfrica7 12349836 YP_005771518.1 CDS HPSA_04645 NC_017361.1 954212 956122 R COG3843 Type IV secretory pathway, VirD2 components (relaxase); hypothetical protein complement(954212..956122) Helicobacter pylori SouthAfrica7 12349837 YP_005771519.1 CDS HPSA_04650 NC_017361.1 956537 956851 D hypothetical protein 956537..956851 Helicobacter pylori SouthAfrica7 12349838 YP_005771520.1 CDS HPSA_04655 NC_017361.1 956844 957125 D COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein 956844..957125 Helicobacter pylori SouthAfrica7 12349839 YP_005771521.1 CDS HPSA_04660 NC_017361.1 957262 959007 R COG3505 Type IV secretory pathway, VirD4 components; VirD4 coupling protein complement(957262..959007) Helicobacter pylori SouthAfrica7 12349840 YP_005771522.1 CDS HPSA_04665 NC_017361.1 959008 959565 R hypothetical protein complement(959008..959565) Helicobacter pylori SouthAfrica7 12349841 YP_005771523.1 CDS HPSA_04670 NC_017361.1 959566 959856 R hypothetical protein complement(959566..959856) Helicobacter pylori SouthAfrica7 12349842 YP_005771524.1 CDS HPSA_04675 NC_017361.1 959853 960308 R hypothetical protein complement(959853..960308) Helicobacter pylori SouthAfrica7 12349843 YP_005771525.1 CDS HPSA_04680 NC_017361.1 960305 961246 R COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; VirB11 type IV secretion ATPase complement(960305..961246) Helicobacter pylori SouthAfrica7 12349844 YP_005771526.1 CDS HPSA_04685 NC_017361.1 961246 961545 R hypothetical protein complement(961246..961545) Helicobacter pylori SouthAfrica7 12349845 YP_005771527.1 CDS HPSA_04690 NC_017361.1 961542 961805 R hypothetical protein complement(961542..961805) Helicobacter pylori SouthAfrica7 12349846 YP_005771528.1 CDS HPSA_04695 NC_017361.1 961795 962091 R hypothetical protein complement(961795..962091) Helicobacter pylori SouthAfrica7 12349847 YP_005771529.1 CDS HPSA_04700 NC_017361.1 962161 963396 R COG2948 Type IV secretory pathway, VirB10 components; competence protein complement(962161..963396) Helicobacter pylori SouthAfrica7 12349848 YP_005771530.1 CDS HPSA_04705 NC_017361.1 963393 964934 R COG3504 Type IV secretory pathway, VirB9 components; comB9-like competence protein complement(963393..964934) Helicobacter pylori SouthAfrica7 12349849 YP_005771531.1 CDS HPSA_04710 NC_017361.1 964934 965920 R COG3736 Type IV secretory pathway, component VirB8; hypothetical protein complement(964934..965920) Helicobacter pylori SouthAfrica7 12349850 YP_005771532.1 CDS HPSA_04715 NC_017361.1 965922 966050 R hypothetical protein complement(965922..966050) Helicobacter pylori SouthAfrica7 12349851 YP_005771533.1 CDS HPSA_04720 NC_017361.1 966050 967993 R COG0550 Topoisomerase IA; topoisomerase I complement(966050..967993) Helicobacter pylori SouthAfrica7 12349852 YP_005771534.1 CDS HPSA_04725 NC_017361.1 967977 970475 R COG3451 Type IV secretory pathway, VirB4 components; DNA transfer protein complement(967977..970475) Helicobacter pylori SouthAfrica7 12349853 YP_005771535.1 CDS HPSA_04730 NC_017361.1 970488 970748 R hypothetical protein complement(970488..970748) Helicobacter pylori SouthAfrica7 12349854 YP_005771536.1 CDS HPSA_04735 NC_017361.1 970749 971051 R hypothetical protein complement(970749..971051) Helicobacter pylori SouthAfrica7 12349855 YP_005771537.1 CDS HPSA_04740 NC_017361.1 971041 972975 R hypothetical protein complement(971041..972975) Helicobacter pylori SouthAfrica7 12349856 YP_005771538.1 CDS HPSA_04755 NC_017361.1 973800 973988 D cagY like protein 973800..973988 Helicobacter pylori SouthAfrica7 12349857 YP_005771539.1 CDS HPSA_04760 NC_017361.1 974421 975434 R hypothetical protein complement(974421..975434) Helicobacter pylori SouthAfrica7 12349858 YP_005771540.1 CDS HPSA_04765 NC_017361.1 975444 975896 R COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase complement(975444..975896) Helicobacter pylori SouthAfrica7 12349859 YP_005771541.1 CDS HPSA_04770 NC_017361.1 975911 976780 R COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta complement(975911..976780) Helicobacter pylori SouthAfrica7 12349860 YP_005771542.1 CDS HPSA_04775 NC_017361.1 976862 977476 D putative recombination protein RecO 976862..977476 Helicobacter pylori SouthAfrica7 12349861 YP_005771543.1 CDS HPSA_04780 NC_017361.1 977487 978143 D COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein 977487..978143 Helicobacter pylori SouthAfrica7 12349862 YP_005771544.1 CDS HPSA_04785 NC_017361.1 978144 978710 R hypothetical protein complement(978144..978710) Helicobacter pylori SouthAfrica7 12349863 YP_005771545.1 CDS HPSA_04790 NC_017361.1 978775 979407 R COG0778 Nitroreductase; oxygen-insensitive NADPH nitroreductase complement(978775..979407) Helicobacter pylori SouthAfrica7 12349864 YP_005771546.1 CDS HPSA_04795 NC_017361.1 979404 980258 R COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase complement(979404..980258) Helicobacter pylori SouthAfrica7 12349865 YP_005771547.1 CDS HPSA_04800 NC_017361.1 980267 980995 R COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein complement(980267..980995) Helicobacter pylori SouthAfrica7 12349866 YP_005771548.1 CDS HPSA_04805 NC_017361.1 981013 982194 R COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase complement(981013..982194) Helicobacter pylori SouthAfrica7 12349867 YP_005771549.1 CDS HPSA_04810 NC_017361.1 982195 982953 R COG1579 Zn-ribbon protein, possibly nucleic acid-binding; hypothetical protein complement(982195..982953) Helicobacter pylori SouthAfrica7 12349868 YP_005771550.1 CDS HPSA_04815 NC_017361.1 982963 983694 R COG0327 Uncharacterized conserved protein; hypothetical protein complement(982963..983694) Helicobacter pylori SouthAfrica7 12349869 YP_005771551.1 CDS glyQ NC_017361.1 983696 984592 R COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha complement(983696..984592) Helicobacter pylori SouthAfrica7 12349870 YP_005771552.1 CDS gpsA NC_017361.1 984603 985541 R COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(984603..985541) Helicobacter pylori SouthAfrica7 12349871 YP_005771553.1 CDS HPSA_04830 NC_017361.1 985732 986250 R hypothetical protein complement(985732..986250) Helicobacter pylori SouthAfrica7 12349872 YP_005771554.1 CDS HPSA_04835 NC_017361.1 986308 987594 R COG0699 Predicted GTPases (dynamin-related); hypothetical protein complement(986308..987594) Helicobacter pylori SouthAfrica7 12349873 YP_005771555.1 CDS HPSA_04840 NC_017361.1 987591 989939 R COG0699 Predicted GTPases (dynamin-related); putative tRNA modification GTPase TrmE complement(987591..989939) Helicobacter pylori SouthAfrica7 12349874 YP_005771556.1 CDS HPSA_04860 NC_017361.1 991826 992113 R COG3309 Uncharacterized virulence-associated protein D; virulence associated protein D (vapD) complement(991826..992113) Helicobacter pylori SouthAfrica7 12349875 YP_005771557.1 CDS HPSA_04865 NC_017361.1 992184 992465 R hypothetical protein complement(992184..992465) Helicobacter pylori SouthAfrica7 12349876 YP_005771558.1 CDS HPSA_04870 NC_017361.1 992481 995540 R COG3696 Putative silver efflux pump; cobalt-zinc-cadmium resistance protein complement(992481..995540) Helicobacter pylori SouthAfrica7 12349877 YP_005771559.1 CDS HPSA_04875 NC_017361.1 995540 996604 R COG0845 Membrane-fusion protein; putative cobalt-zinc-cadmium resistance protein, CzcB family; putative signal peptide complement(995540..996604) Helicobacter pylori SouthAfrica7 12349878 YP_005771560.1 CDS HPSA_04880 NC_017361.1 996601 997899 R hypothetical protein complement(996601..997899) Helicobacter pylori SouthAfrica7 12349879 YP_005771561.1 CDS glyS NC_017361.1 997889 1000018 R COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta complement(997889..1000018) Helicobacter pylori SouthAfrica7 12349880 YP_005771562.1 CDS HPSA_04890 NC_017361.1 1001205 1002683 D COG0696 Phosphoglyceromutase; phosphoglyceromutase 1001205..1002683 Helicobacter pylori SouthAfrica7 12349881 YP_005771563.1 CDS gatC NC_017361.1 1002698 1002976 D COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA amidotransferase subunit C 1002698..1002976 Helicobacter pylori SouthAfrica7 12349882 YP_005771564.1 CDS HPSA_04900 NC_017361.1 1003087 1004397 R COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1003087..1004397) Helicobacter pylori SouthAfrica7 12349883 YP_005771565.1 CDS HPSA_04905 NC_017361.1 1004519 1005982 D COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 1004519..1005982 Helicobacter pylori SouthAfrica7 12349884 YP_005771566.1 CDS HPSA_04910 NC_017361.1 1005998 1007479 D COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 1005998..1007479 Helicobacter pylori SouthAfrica7 12349885 YP_005771567.1 CDS HPSA_04915 NC_017361.1 1007608 1008765 D COG0206 Cell division GTPase; cell division protein FtsZ 1007608..1008765 Helicobacter pylori SouthAfrica7 12349886 YP_005771568.1 CDS HPSA_04920 NC_017361.1 1009055 1009270 R hypothetical protein complement(1009055..1009270) Helicobacter pylori SouthAfrica7 12349887 YP_005771569.1 CDS HPSA_04925 NC_017361.1 1009457 1009567 R hypothetical protein complement(1009457..1009567) Helicobacter pylori SouthAfrica7 12349888 YP_005771570.1 CDS HPSA_04930 NC_017361.1 1009962 1010135 R hypothetical protein complement(1009962..1010135) Helicobacter pylori SouthAfrica7 12349889 YP_005771571.1 CDS HPSA_04935 NC_017361.1 1010185 1011915 R COG1479 Uncharacterized conserved protein; hypothetical protein complement(1010185..1011915) Helicobacter pylori SouthAfrica7 12349890 YP_005771572.1 CDS HPSA_04940 NC_017361.1 1012193 1013017 R COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS complement(1012193..1013017) Helicobacter pylori SouthAfrica7 12349891 YP_005771573.1 CDS HPSA_04945 NC_017361.1 1013086 1013187 D hypothetical protein 1013086..1013187 Helicobacter pylori SouthAfrica7 12349892 YP_005771574.1 CDS HPSA_04950 NC_017361.1 1013115 1013330 R hypothetical protein complement(1013115..1013330) Helicobacter pylori SouthAfrica7 12349893 YP_005771575.1 CDS HPSA_04955 NC_017361.1 1013463 1013648 D hypothetical protein 1013463..1013648 Helicobacter pylori SouthAfrica7 12349894 YP_005771576.1 CDS HPSA_04960 NC_017361.1 1017799 1017963 D hypothetical protein 1017799..1017963 Helicobacter pylori SouthAfrica7 12349897 YP_005771577.1 CDS HPSA_04965 NC_017361.1 1018016 1018354 D COG0439 Biotin carboxylase; hypothetical protein 1018016..1018354 Helicobacter pylori SouthAfrica7 12349898 YP_005771578.1 CDS HPSA_04970 NC_017361.1 1018523 1020349 D COG1479 Uncharacterized conserved protein; hypothetical protein 1018523..1020349 Helicobacter pylori SouthAfrica7 12349899 YP_005771579.1 CDS HPSA_04975 NC_017361.1 1020504 1021385 D hypothetical protein 1020504..1021385 Helicobacter pylori SouthAfrica7 12349900 YP_005771580.1 CDS HPSA_04980 NC_017361.1 1021739 1021906 D hypothetical protein 1021739..1021906 Helicobacter pylori SouthAfrica7 12349901 YP_005771581.1 CDS HPSA_04985 NC_017361.1 1022071 1023918 R COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase complement(1022071..1023918) Helicobacter pylori SouthAfrica7 12349902 YP_005771582.1 CDS HPSA_04990 NC_017361.1 1023933 1025102 R COG0438 Glycosyltransferase; type 1 capsular polysaccharide biosynthesis protein J complement(1023933..1025102) Helicobacter pylori SouthAfrica7 12349903 YP_005771583.1 CDS HPSA_04995 NC_017361.1 1025107 1025535 R COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein complement(1025107..1025535) Helicobacter pylori SouthAfrica7 12349904 YP_005771584.1 CDS HPSA_05000 NC_017361.1 1025557 1026345 R COG0500 SAM-dependent methyltransferases; methyltransferase complement(1025557..1026345) Helicobacter pylori SouthAfrica7 12349905 YP_005771585.1 CDS HPSA_05005 NC_017361.1 1026349 1027356 R hypothetical protein complement(1026349..1027356) Helicobacter pylori SouthAfrica7 12349906 YP_005771586.1 CDS HPSA_05010 NC_017361.1 1027357 1029285 R COG0143 Methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(1027357..1029285) Helicobacter pylori SouthAfrica7 12349907 YP_005771587.1 CDS HPSA_05015 NC_017361.1 1029470 1030639 D COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acid synthase 1029470..1030639 Helicobacter pylori SouthAfrica7 12349908 YP_005771588.1 CDS HPSA_05020 NC_017361.1 1030642 1032474 R COG0668 Small-conductance mechanosensitive channel; hypothetical protein complement(1030642..1032474) Helicobacter pylori SouthAfrica7 12349909 YP_005771589.1 CDS HPSA_05025 NC_017361.1 1032474 1032575 D hypothetical protein 1032474..1032575 Helicobacter pylori SouthAfrica7 12349910 YP_005771590.1 CDS HPSA_05030 NC_017361.1 1033416 1033514 R hypothetical protein complement(1033416..1033514) Helicobacter pylori SouthAfrica7 12349911 YP_005771591.1 CDS HPSA_05035 NC_017361.1 1033978 1034079 R hypothetical protein complement(1033978..1034079) Helicobacter pylori SouthAfrica7 12349916 YP_005771592.1 CDS HPSA_05040 NC_017361.1 1034164 1035003 R putative neuraminyllactose-binding hemagglutinin-like protein complement(1034164..1035003) Helicobacter pylori SouthAfrica7 12349917 YP_005771593.1 CDS guaA NC_017361.1 1034990 1036516 R COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase complement(1034990..1036516) Helicobacter pylori SouthAfrica7 12349918 YP_005771594.1 CDS HPSA_05050 NC_017361.1 1036527 1037012 R hypothetical protein complement(1036527..1037012) Helicobacter pylori SouthAfrica7 12349919 YP_005771595.1 CDS HPSA_05055 NC_017361.1 1037009 1037155 R hypothetical protein complement(1037009..1037155) Helicobacter pylori SouthAfrica7 12349920 YP_005771596.1 CDS HPSA_05060 NC_017361.1 1037180 1039570 R COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase complement(1037180..1039570) Helicobacter pylori SouthAfrica7 12349921 YP_005771597.1 CDS HPSA_05065 NC_017361.1 1039674 1040264 R hypothetical protein complement(1039674..1040264) Helicobacter pylori SouthAfrica7 12349922 YP_005771598.1 CDS HPSA_05070 NC_017361.1 1040291 1041613 R COG0520 Selenocysteine lyase; nifS-like protein complement(1040291..1041613) Helicobacter pylori SouthAfrica7 12349923 YP_005771599.1 CDS HPSA_05075 NC_017361.1 1041632 1041946 R COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; HIT-family protein complement(1041632..1041946) Helicobacter pylori SouthAfrica7 12349924 YP_005771600.1 CDS pheS NC_017361.1 1042027 1043013 D COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1042027..1043013 Helicobacter pylori SouthAfrica7 12349925 YP_005771601.1 CDS pheT NC_017361.1 1043013 1045304 D COG0073 EMAP domain; phenylalanyl-tRNA synthetase subunit beta 1043013..1045304 Helicobacter pylori SouthAfrica7 12349926 YP_005771602.1 CDS HPSA_05090 NC_017361.1 1045329 1046618 D COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1045329..1046618 Helicobacter pylori SouthAfrica7 12349927 YP_005771603.1 CDS ispH NC_017361.1 1046608 1047432 D COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1046608..1047432 Helicobacter pylori SouthAfrica7 12349928 YP_005771604.1 CDS rpsA NC_017361.1 1047554 1049215 D COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1047554..1049215 Helicobacter pylori SouthAfrica7 12349929 YP_005771605.1 CDS HPSA_05105 NC_017361.1 1049244 1049762 D COG0480 Translation elongation factors (GTPases); hypothetical protein 1049244..1049762 Helicobacter pylori SouthAfrica7 12349930 YP_005771606.1 CDS HPSA_05110 NC_017361.1 1049778 1051352 D COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 1049778..1051352 Helicobacter pylori SouthAfrica7 12349931 YP_005771607.1 CDS HPSA_05115 NC_017361.1 1051322 1051873 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1051322..1051873 Helicobacter pylori SouthAfrica7 12349932 YP_005771608.1 CDS HPSA_05120 NC_017361.1 1051876 1053204 D COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 1051876..1053204 Helicobacter pylori SouthAfrica7 12349933 YP_005771609.1 CDS HPSA_05125 NC_017361.1 1053214 1053882 D COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 1053214..1053882 Helicobacter pylori SouthAfrica7 12349934 YP_005771610.1 CDS HPSA_05130 NC_017361.1 1053884 1054657 D COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase 1053884..1054657 Helicobacter pylori SouthAfrica7 12349935 YP_005771611.1 CDS HPSA_05135 NC_017361.1 1054661 1055599 D COG0835 Chemotaxis signal transduction protein; chemotaxis protein CheV 1054661..1055599 Helicobacter pylori SouthAfrica7 12349936 YP_005771612.1 CDS HPSA_05140 NC_017361.1 1055653 1058085 D COG0643 Chemotaxis protein histidine kinase and related kinases; auto phosphorylating histidine kinase 1055653..1058085 Helicobacter pylori SouthAfrica7 12349937 YP_005771613.1 CDS HPSA_05145 NC_017361.1 1058082 1058579 D COG0835 Chemotaxis signal transduction protein; CheA-MCP coupling protein 1058082..1058579 Helicobacter pylori SouthAfrica7 12349938 YP_005771614.1 CDS HPSA_05150 NC_017361.1 1058832 1059332 R COG2077 Peroxiredoxin; thiol peroxidase complement(1058832..1059332) Helicobacter pylori SouthAfrica7 12349939 YP_005771615.1 CDS HPSA_05155 NC_017361.1 1059556 1060197 D COG0605 Superoxide dismutase; superoxide dismutase 1059556..1060197 Helicobacter pylori SouthAfrica7 12349940 YP_005771616.1 CDS HPSA_05160 NC_017361.1 1060249 1060968 D COG0500 SAM-dependent methyltransferases; hypothetical protein 1060249..1060968 Helicobacter pylori SouthAfrica7 12349941 YP_005771617.1 CDS HPSA_05165 NC_017361.1 1061002 1062861 R COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA complement(1061002..1062861) Helicobacter pylori SouthAfrica7 12349942 YP_005771618.1 CDS HPSA_05170 NC_017361.1 1062846 1063082 R hypothetical protein complement(1062846..1063082) Helicobacter pylori SouthAfrica7 12349943 YP_005771619.1 CDS HPSA_05175 NC_017361.1 1063095 1063322 R COG0055 F0F1-type ATP synthase, beta subunit; hypothetical protein complement(1063095..1063322) Helicobacter pylori SouthAfrica7 12349944 YP_005771620.1 CDS HPSA_05180 NC_017361.1 1063802 1064554 D hypothetical protein 1063802..1064554 Helicobacter pylori SouthAfrica7 12349945 YP_005771621.1 CDS HPSA_05185 NC_017361.1 1064679 1065209 R hypothetical protein complement(1064679..1065209) Helicobacter pylori SouthAfrica7 12349946 YP_005771622.1 CDS HPSA_05190 NC_017361.1 1065375 1066598 D COG0501 Zn-dependent protease with chaperone function; zinc-metalloprotease 1065375..1066598 Helicobacter pylori SouthAfrica7 12349947 YP_005771623.1 CDS HPSA_05195 NC_017361.1 1066595 1067431 D COG2890 Methylase of polypeptide chain release factors; protoporphyrinogen oxidase 1066595..1067431 Helicobacter pylori SouthAfrica7 12349948 YP_005771624.1 CDS HPSA_05200 NC_017361.1 1067492 1068838 D COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1067492..1068838 Helicobacter pylori SouthAfrica7 12349949 YP_005771625.1 CDS HPSA_05205 NC_017361.1 1068861 1070027 R Alpha-(1,3)-fucosyltransferase complement(1068861..1070027) Helicobacter pylori SouthAfrica7 12349950 YP_005771626.1 CDS HPSA_05210 NC_017361.1 1070002 1070118 R hypothetical protein complement(1070002..1070118) Helicobacter pylori SouthAfrica7 12349951 YP_005771627.1 CDS HPSA_05215 NC_017361.1 1070128 1072938 R COG1333 ResB protein required for cytochrome c biosynthesis; cytochrome c biogenesis protein complement(1070128..1072938) Helicobacter pylori SouthAfrica7 12349952 YP_005771628.1 CDS HPSA_05220 NC_017361.1 1072948 1073613 R COG2143 Thioredoxin-related protein; thiol:disulfide interchange protein DsbC complement(1072948..1073613) Helicobacter pylori SouthAfrica7 12349953 YP_005771629.1 CDS hemH NC_017361.1 1073687 1074694 R COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase complement(1073687..1074694) Helicobacter pylori SouthAfrica7 12349954 YP_005771630.1 CDS HPSA_05230 NC_017361.1 1074750 1075181 D hypothetical protein 1074750..1075181 Helicobacter pylori SouthAfrica7 12349955 YP_005771631.1 CDS HPSA_05235 NC_017361.1 1075182 1075862 D COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 1075182..1075862 Helicobacter pylori SouthAfrica7 12349956 YP_005771632.1 CDS HPSA_05240 NC_017361.1 1075958 1078036 R hypothetical protein complement(1075958..1078036) Helicobacter pylori SouthAfrica7 12349957 YP_005771633.1 CDS dcd NC_017361.1 1078186 1078752 R COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase complement(1078186..1078752) Helicobacter pylori SouthAfrica7 12349958 YP_005771634.1 CDS HPSA_05250 NC_017361.1 1078877 1079362 D COG0511 Biotin carboxyl carrier protein; biotin carboxyl carrier protein 1078877..1079362 Helicobacter pylori SouthAfrica7 12349959 YP_005771635.1 CDS HPSA_05255 NC_017361.1 1079368 1080735 D COG0439 Biotin carboxylase; biotin carboxylase 1079368..1080735 Helicobacter pylori SouthAfrica7 12349960 YP_005771636.1 CDS HPSA_05270 NC_017361.1 1081795 1082343 D putative type II restriction endonuclease 1081795..1082343 Helicobacter pylori SouthAfrica7 12349961 YP_005771637.1 CDS HPSA_05275 NC_017361.1 1082437 1083042 D hypothetical protein 1082437..1083042 Helicobacter pylori SouthAfrica7 12349962 YP_005771638.1 CDS HPSA_05280 NC_017361.1 1083039 1084169 D COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; sugar nucleotide biosynthesis 1083039..1084169 Helicobacter pylori SouthAfrica7 12349963 YP_005771639.1 CDS nrdF NC_017361.1 1084471 1085496 D COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 1084471..1085496 Helicobacter pylori SouthAfrica7 12349965 YP_005771640.1 CDS pcm NC_017361.1 1085506 1086135 D COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 1085506..1086135 Helicobacter pylori SouthAfrica7 12349966 YP_005771641.1 CDS HPSA_05295 NC_017361.1 1086155 1087192 D COG0795 Predicted permeases; hypothetical protein 1086155..1087192 Helicobacter pylori SouthAfrica7 12349967 YP_005771642.1 CDS truA NC_017361.1 1087193 1087921 D COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 1087193..1087921 Helicobacter pylori SouthAfrica7 12349968 YP_005771643.1 CDS HPSA_05305 NC_017361.1 1087915 1088949 R COG1087 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase complement(1087915..1088949) Helicobacter pylori SouthAfrica7 12349969 YP_005771644.1 CDS HPSA_05315 NC_017361.1 1089345 1089629 R hypothetical protein complement(1089345..1089629) Helicobacter pylori SouthAfrica7 12349972 YP_005771645.1 CDS HPSA_05320 NC_017361.1 1089996 1091531 D putative outer membrane protein 1089996..1091531 Helicobacter pylori SouthAfrica7 12349973 YP_005771646.1 CDS HPSA_05325 NC_017361.1 1091553 1092305 D COG4221 Short-chain alcohol dehydrogenase of unknown specificity; short chain alcohol dehydrogenase 1091553..1092305 Helicobacter pylori SouthAfrica7 12349974 YP_005771647.1 CDS HPSA_05330 NC_017361.1 1092368 1092481 R hypothetical protein complement(1092368..1092481) Helicobacter pylori SouthAfrica7 12349975 YP_005771648.1 CDS HPSA_05335 NC_017361.1 1092517 1093389 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(1092517..1093389) Helicobacter pylori SouthAfrica7 12349976 YP_005771649.1 CDS HPSA_05340 NC_017361.1 1093481 1094113 R COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase complement(1093481..1094113) Helicobacter pylori SouthAfrica7 12349977 YP_005771650.1 CDS HPSA_05345 NC_017361.1 1094132 1095958 R COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase complement(1094132..1095958) Helicobacter pylori SouthAfrica7 12349978 YP_005771651.1 CDS HPSA_05350 NC_017361.1 1096024 1097301 D COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1096024..1097301 Helicobacter pylori SouthAfrica7 12349979 YP_005771652.1 CDS HPSA_05355 NC_017361.1 1097312 1097995 D COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; 6-phosphogluconolactonase 1097312..1097995 Helicobacter pylori SouthAfrica7 12349980 YP_005771653.1 CDS glk NC_017361.1 1097982 1098992 D COG0837 Glucokinase; glucokinase 1097982..1098992 Helicobacter pylori SouthAfrica7 12349981 YP_005771654.1 CDS HPSA_05365 NC_017361.1 1099157 1100203 D COG1064 Zn-dependent alcohol dehydrogenases; NADP-dependent alcohol dehydrogenase 1099157..1100203 Helicobacter pylori SouthAfrica7 12349982 YP_005771655.1 CDS HPSA_05370 NC_017361.1 1100216 1101382 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein complement(1100216..1101382) Helicobacter pylori SouthAfrica7 12349983 YP_005771656.1 CDS HPSA_05375 NC_017361.1 1101516 1102712 R COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide biosynthesis protein complement(1101516..1102712) Helicobacter pylori SouthAfrica7 12349984 YP_005771657.1 CDS HPSA_05380 NC_017361.1 1102883 1104190 D hypothetical protein 1102883..1104190 Helicobacter pylori SouthAfrica7 12349985 YP_005771658.1 CDS HPSA_05385 NC_017361.1 1104197 1104859 R putative outer membrane protein HorH; putative signal peptide complement(1104197..1104859) Helicobacter pylori SouthAfrica7 12349986 YP_005771659.1 CDS HPSA_05390 NC_017361.1 1105186 1105746 D COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate flavodoxin oxidoreductase subunit gamma 1105186..1105746 Helicobacter pylori SouthAfrica7 12349987 YP_005771660.1 CDS porD NC_017361.1 1105762 1106154 D COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit; pyruvate flavodoxin oxidoreductase subunit delta 1105762..1106154 Helicobacter pylori SouthAfrica7 12349988 YP_005771661.1 CDS porA NC_017361.1 1106164 1107387 D COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin oxidoreductase subunit alpha 1106164..1107387 Helicobacter pylori SouthAfrica7 12349989 YP_005771662.1 CDS HPSA_05405 NC_017361.1 1107400 1108344 D COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; pyruvate ferredoxin oxidoreductase subunit beta 1107400..1108344 Helicobacter pylori SouthAfrica7 12349990 YP_005771663.1 CDS HPSA_05410 NC_017361.1 1108437 1109759 D COG0015 Adenylosuccinate lyase; adenylosuccinate lyase 1108437..1109759 Helicobacter pylori SouthAfrica7 12349991 YP_005771664.1 CDS HPSA_05415 NC_017361.1 1109860 1110693 D outer membrane protein 3 1109860..1110693 Helicobacter pylori SouthAfrica7 12349992 YP_005771665.1 CDS HPSA_05420 NC_017361.1 1110717 1112693 R COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B complement(1110717..1112693) Helicobacter pylori SouthAfrica7 12349993 YP_005771666.1 CDS HPSA_05425 NC_017361.1 1112733 1113413 R hypothetical protein complement(1112733..1113413) Helicobacter pylori SouthAfrica7 12349994 YP_005771667.1 CDS HPSA_05430 NC_017361.1 1113426 1116326 R hypothetical protein complement(1113426..1116326) Helicobacter pylori SouthAfrica7 12349995 YP_005771668.1 CDS HPSA_05435 NC_017361.1 1116707 1117477 R COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein complement(1116707..1117477) Helicobacter pylori SouthAfrica7 12349996 YP_005771669.1 CDS HPSA_05440 NC_017361.1 1117751 1119454 R COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase complement(1117751..1119454) Helicobacter pylori SouthAfrica7 12349997 YP_005771670.1 CDS flgK NC_017361.1 1119789 1121609 R COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK complement(1119789..1121609) Helicobacter pylori SouthAfrica7 12349998 YP_005771671.1 CDS HPSA_05450 NC_017361.1 1121611 1122045 R hypothetical protein complement(1121611..1122045) Helicobacter pylori SouthAfrica7 12349999 YP_005771672.1 CDS HPSA_05455 NC_017361.1 1122124 1122849 R hypothetical protein complement(1122124..1122849) Helicobacter pylori SouthAfrica7 12350000 YP_005771673.1 CDS HPSA_05460 NC_017361.1 1122867 1123832 R COG0270 Site-specific DNA methylase; type II DNA modification enzyme complement(1122867..1123832) Helicobacter pylori SouthAfrica7 12350001 YP_005771674.1 CDS HPSA_05465 NC_017361.1 1123975 1124187 R FlgM protein complement(1123975..1124187) Helicobacter pylori SouthAfrica7 12350002 YP_005771675.1 CDS HPSA_05470 NC_017361.1 1124256 1124462 R hypothetical protein complement(1124256..1124462) Helicobacter pylori SouthAfrica7 12350003 YP_005771676.1 CDS HPSA_05475 NC_017361.1 1124504 1125052 R COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase slyD complement(1124504..1125052) Helicobacter pylori SouthAfrica7 12350004 YP_005771677.1 CDS HPSA_05480 NC_017361.1 1125039 1126088 R COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; hypothetical protein complement(1125039..1126088) Helicobacter pylori SouthAfrica7 12350005 YP_005771678.1 CDS HPSA_05485 NC_017361.1 1126096 1126644 R COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein complement(1126096..1126644) Helicobacter pylori SouthAfrica7 12350006 YP_005771679.1 CDS tolB NC_017361.1 1126710 1127963 R COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB complement(1126710..1127963) Helicobacter pylori SouthAfrica7 12350007 YP_005771680.1 CDS HPSA_05495 NC_017361.1 1127960 1128748 R hypothetical protein complement(1127960..1128748) Helicobacter pylori SouthAfrica7 12350008 YP_005771681.1 CDS HPSA_05500 NC_017361.1 1128762 1129163 R COG0848 Biopolymer transport protein; biopolymer transport protein ExbD/TolR complement(1128762..1129163) Helicobacter pylori SouthAfrica7 12350009 YP_005771682.1 CDS HPSA_05505 NC_017361.1 1129203 1129781 R COG0811 Biopolymer transport proteins; biopolymer transport protein complement(1129203..1129781) Helicobacter pylori SouthAfrica7 12350010 YP_005771683.1 CDS atpC NC_017361.1 1129792 1130163 R COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon complement(1129792..1130163) Helicobacter pylori SouthAfrica7 12350011 YP_005771684.1 CDS HPSA_05515 NC_017361.1 1130173 1131573 R COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta complement(1130173..1131573) Helicobacter pylori SouthAfrica7 12350012 YP_005771685.1 CDS HPSA_05520 NC_017361.1 1131601 1132506 R COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma complement(1131601..1132506) Helicobacter pylori SouthAfrica7 12350013 YP_005771686.1 CDS HPSA_05525 NC_017361.1 1132521 1134032 R COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha complement(1132521..1134032) Helicobacter pylori SouthAfrica7 12350014 YP_005771687.1 CDS HPSA_05530 NC_017361.1 1134055 1134597 R F0F1 ATP synthase subunit delta complement(1134055..1134597) Helicobacter pylori SouthAfrica7 12350015 YP_005771688.1 CDS HPSA_05535 NC_017361.1 1134598 1135113 R COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B complement(1134598..1135113) Helicobacter pylori SouthAfrica7 12350016 YP_005771689.1 CDS HPSA_05540 NC_017361.1 1135117 1135551 R COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B' complement(1135117..1135551) Helicobacter pylori SouthAfrica7 12350017 YP_005771690.1 CDS HPSA_05545 NC_017361.1 1135666 1136538 R COG1475 Predicted transcriptional regulators; plasmid replication-partition related protein complement(1135666..1136538) Helicobacter pylori SouthAfrica7 12350018 YP_005771691.1 CDS HPSA_05550 NC_017361.1 1136538 1137338 R COG1192 ATPases involved in chromosome partitioning; SpoOJ regulator (soj) complement(1136538..1137338) Helicobacter pylori SouthAfrica7 12350019 YP_005771692.1 CDS HPSA_05555 NC_017361.1 1137341 1137979 R COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase complement(1137341..1137979) Helicobacter pylori SouthAfrica7 12350020 YP_005771693.1 CDS fmt NC_017361.1 1137976 1138893 R COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1137976..1138893) Helicobacter pylori SouthAfrica7 12350021 YP_005771694.1 CDS HPSA_05565 NC_017361.1 1138905 1141496 R COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; ATPase complement(1138905..1141496) Helicobacter pylori SouthAfrica7 12350022 YP_005771695.1 CDS HPSA_05570 NC_017361.1 1141550 1142839 R COG4487 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1141550..1142839) Helicobacter pylori SouthAfrica7 12350023 YP_005771696.1 CDS HPSA_05575 NC_017361.1 1142956 1143504 D hypothetical protein 1142956..1143504 Helicobacter pylori SouthAfrica7 12350024 YP_005771697.1 CDS rplS NC_017361.1 1147798 1148154 R COG0335 Ribosomal protein L19; 50S ribosomal protein L19 complement(1147798..1148154) Helicobacter pylori SouthAfrica7 12350026 YP_005771698.1 CDS trmD NC_017361.1 1148175 1148864 R COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase complement(1148175..1148864) Helicobacter pylori SouthAfrica7 12350027 YP_005771699.1 CDS rimM NC_017361.1 1148865 1149410 R COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM complement(1148865..1149410) Helicobacter pylori SouthAfrica7 12350028 YP_005771700.1 CDS HPSA_05605 NC_017361.1 1149420 1149773 R COG1837 Predicted RNA-binding protein (contains KH domain); hypothetical protein complement(1149420..1149773) Helicobacter pylori SouthAfrica7 12350029 YP_005771701.1 CDS rpsP NC_017361.1 1149789 1150019 R COG0228 Ribosomal protein S16; 30S ribosomal protein S16 complement(1149789..1150019) Helicobacter pylori SouthAfrica7 12350030 YP_005771702.1 CDS HPSA_05615 NC_017361.1 1150089 1151435 R COG0541 Signal recognition particle GTPase; signal recognition particle protein complement(1150089..1151435) Helicobacter pylori SouthAfrica7 12350031 YP_005771703.1 CDS valS NC_017361.1 1151450 1154068 R COG0525 Valyl-tRNA synthetase; valyl-tRNA synthetase complement(1151450..1154068) Helicobacter pylori SouthAfrica7 12350032 YP_005771704.1 CDS HPSA_05625 NC_017361.1 1154193 1154600 D COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1154193..1154600 Helicobacter pylori SouthAfrica7 12350033 YP_005771705.1 CDS murG NC_017361.1 1154610 1155671 D COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1154610..1155671 Helicobacter pylori SouthAfrica7 12350034 YP_005771706.1 CDS HPSA_05635 NC_017361.1 1155781 1157865 D Outer membrane protein HopI; putative signal peptide 1155781..1157865 Helicobacter pylori SouthAfrica7 12350035 YP_005771707.1 CDS HPSA_05640 NC_017361.1 1157889 1161569 D Outer membrane protein HopL; putative signal peptide 1157889..1161569 Helicobacter pylori SouthAfrica7 12350036 YP_005771708.1 CDS HPSA_05645 NC_017361.1 1161589 1162362 D COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 1161589..1162362 Helicobacter pylori SouthAfrica7 12350037 YP_005771709.1 CDS HPSA_05650 NC_017361.1 1162390 1162923 D COG2184 Protein involved in cell division; cell filamentation protein 1162390..1162923 Helicobacter pylori SouthAfrica7 12350038 YP_005771710.1 CDS HPSA_05655 NC_017361.1 1163095 1163214 D hypothetical protein 1163095..1163214 Helicobacter pylori SouthAfrica7 12350039 YP_005771711.1 CDS HPSA_05660 NC_017361.1 1163280 1163702 R COG0319 Predicted metal-dependent hydrolase; putative metalloprotease complement(1163280..1163702) Helicobacter pylori SouthAfrica7 12350040 YP_005771712.1 CDS HPSA_05665 NC_017361.1 1163754 1164248 R COG0716 Flavodoxins; flavodoxin FldA complement(1163754..1164248) Helicobacter pylori SouthAfrica7 12350041 YP_005771713.1 CDS HPSA_05670 NC_017361.1 1164338 1164919 R COG0586 Uncharacterized membrane-associated protein; hypothetical protein complement(1164338..1164919) Helicobacter pylori SouthAfrica7 12350042 YP_005771714.1 CDS HPSA_05675 NC_017361.1 1165040 1165231 D COG3197 Uncharacterized protein, possibly involved in nitrogen fixation; cation transport subunit for cbb3-type oxidase 1165040..1165231 Helicobacter pylori SouthAfrica7 12350043 YP_005771715.1 CDS HPSA_05680 NC_017361.1 1165250 1166221 D COG0492 Thioredoxin reductase; thioredoxin reductase 1165250..1166221 Helicobacter pylori SouthAfrica7 12350044 YP_005771716.1 CDS HPSA_05685 NC_017361.1 1166433 1167545 R COG0477 Permeases of the major facilitator superfamily; tetracycline resistance protein tetA(P), putative complement(1166433..1167545) Helicobacter pylori SouthAfrica7 12350045 YP_005771717.1 CDS pgi NC_017361.1 1167664 1169301 D COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1167664..1169301 Helicobacter pylori SouthAfrica7 12350046 YP_005771718.1 CDS HPSA_05695 NC_017361.1 1169580 1170995 D Outer membrane protein HofH; putative signal peptide 1169580..1170995 Helicobacter pylori SouthAfrica7 12350047 YP_005771719.1 CDS HPSA_05700 NC_017361.1 1171000 1171272 R hypothetical protein complement(1171000..1171272) Helicobacter pylori SouthAfrica7 12350048 YP_005771720.1 CDS HPSA_05705 NC_017361.1 1171568 1173631 R COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein complement(1171568..1173631) Helicobacter pylori SouthAfrica7 12350049 YP_005771721.1 CDS HPSA_05710 NC_017361.1 1173840 1174493 D COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter, permease protein 1173840..1174493 Helicobacter pylori SouthAfrica7 12350050 YP_005771722.1 CDS HPSA_05715 NC_017361.1 1174495 1175166 D COG0765 ABC-type amino acid transport system, permease component; polar amino acid transport system permease protein 1174495..1175166 Helicobacter pylori SouthAfrica7 12350051 YP_005771723.1 CDS HPSA_05720 NC_017361.1 1175168 1175914 D COG1126 ABC-type polar amino acid transport system, ATPase component; amino acid ABC transporter ATP-binding protein 1175168..1175914 Helicobacter pylori SouthAfrica7 12350052 YP_005771724.1 CDS HPSA_05725 NC_017361.1 1175963 1176796 D COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) 1175963..1176796 Helicobacter pylori SouthAfrica7 12350053 YP_005771725.1 CDS HPSA_05730 NC_017361.1 1176912 1177466 D hypothetical protein 1176912..1177466 Helicobacter pylori SouthAfrica7 12350054 YP_005771726.1 CDS HPSA_05735 NC_017361.1 1177870 1179093 R COG0738 Fucose permease; glucose/galactose transporter complement(1177870..1179093) Helicobacter pylori SouthAfrica7 12350055 YP_005771727.1 CDS HPSA_05740 NC_017361.1 1179223 1180530 R COG2252 Permeases; putative permease; putative membrane protein complement(1179223..1180530) Helicobacter pylori SouthAfrica7 12350056 YP_005771728.1 CDS HPSA_05745 NC_017361.1 1180848 1180967 R hypothetical protein complement(1180848..1180967) Helicobacter pylori SouthAfrica7 12350057 YP_005771729.1 CDS HPSA_05750 NC_017361.1 1180951 1182837 R Outer membrane protein HopQ; putative signal peptide complement(1180951..1182837) Helicobacter pylori SouthAfrica7 12350058 YP_005771730.1 CDS HPSA_05755 NC_017361.1 1182927 1183034 D hypothetical protein 1182927..1183034 Helicobacter pylori SouthAfrica7 12350059 YP_005771731.1 CDS HPSA_05760 NC_017361.1 1183090 1183173 D hypothetical protein 1183090..1183173 Helicobacter pylori SouthAfrica7 12350060 YP_005771732.1 CDS HPSA_05765 NC_017361.1 1183516 1184814 D COG2890 Methylase of polypeptide chain release factors; hypothetical protein 1183516..1184814 Helicobacter pylori SouthAfrica7 12350061 YP_005771733.1 CDS HPSA_05770 NC_017361.1 1184774 1185286 D hypothetical protein 1184774..1185286 Helicobacter pylori SouthAfrica7 12350062 YP_005771734.1 CDS HPSA_05775 NC_017361.1 1185368 1186075 R COG0813 Purine-nucleoside phosphorylase; purine-nucleoside phosphorylase complement(1185368..1186075) Helicobacter pylori SouthAfrica7 12350063 YP_005771735.1 CDS HPSA_05780 NC_017361.1 1186072 1187313 R COG1015 Phosphopentomutase; phosphopentomutase complement(1186072..1187313) Helicobacter pylori SouthAfrica7 12350064 YP_005771736.1 CDS HPSA_05785 NC_017361.1 1187325 1188581 R COG1972 Nucleoside permease; pyrimidine nucleoside transport protein complement(1187325..1188581) Helicobacter pylori SouthAfrica7 12350065 YP_005771737.1 CDS HPSA_05790 NC_017361.1 1188833 1189834 R COG1076 DnaJ-domain-containing proteins 1; heat shock protein DnaJ-like protein complement(1188833..1189834) Helicobacter pylori SouthAfrica7 12350067 YP_005771738.1 CDS HPSA_05795 NC_017361.1 1189933 1190055 R hypothetical protein complement(1189933..1190055) Helicobacter pylori SouthAfrica7 12350068 YP_005771739.1 CDS HPSA_05800 NC_017361.1 1189979 1191310 D COG0477 Permeases of the major facilitator superfamily; multidrug-efflux transporter 1189979..1191310 Helicobacter pylori SouthAfrica7 12350069 YP_005771740.1 CDS HPSA_05805 NC_017361.1 1191326 1192087 D COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; hypothetical protein 1191326..1192087 Helicobacter pylori SouthAfrica7 12350070 YP_005771741.1 CDS HPSA_05810 NC_017361.1 1192092 1193243 R COG0475 Kef-type K+ transport systems, membrane components; Na+/H+ antiporter complement(1192092..1193243) Helicobacter pylori SouthAfrica7 12350071 YP_005771742.1 CDS HPSA_05815 NC_017361.1 1193269 1194648 R COG0534 Na+-driven multidrug efflux pump; hypothetical protein complement(1193269..1194648) Helicobacter pylori SouthAfrica7 12350072 YP_005771743.1 CDS HPSA_05820 NC_017361.1 1194818 1195993 R COG2814 Arabinose efflux permease; sugar efflux transporter complement(1194818..1195993) Helicobacter pylori SouthAfrica7 12350073 YP_005771744.1 CDS HPSA_05825 NC_017361.1 1196271 1197014 D COG3338 Carbonic anhydrase; Alpha-carbonic anhydrase; putative signal peptide 1196271..1197014 Helicobacter pylori SouthAfrica7 12350074 YP_005771745.1 CDS HPSA_05830 NC_017361.1 1197242 1198291 R hypothetical protein complement(1197242..1198291) Helicobacter pylori SouthAfrica7 12350075 YP_005771746.1 CDS HPSA_05835 NC_017361.1 1198709 1199749 R COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase complement(1198709..1199749) Helicobacter pylori SouthAfrica7 12350076 YP_005771747.1 CDS hisS NC_017361.1 1199736 1201064 R COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase complement(1199736..1201064) Helicobacter pylori SouthAfrica7 12350077 YP_005771748.1 CDS HPSA_05845 NC_017361.1 1201126 1202175 D COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose--LPS heptosyltransferase II 1201126..1202175 Helicobacter pylori SouthAfrica7 12350078 YP_005771749.1 CDS HPSA_05850 NC_017361.1 1202309 1202527 R hypothetical protein complement(1202309..1202527) Helicobacter pylori SouthAfrica7 12350079 YP_005771750.1 CDS HPSA_05870 NC_017361.1 1203806 1203907 R hypothetical protein complement(1203806..1203907) Helicobacter pylori SouthAfrica7 12350080 YP_005771751.1 CDS HPSA_05875 NC_017361.1 1204217 1206295 R COG0480 Translation elongation factors (GTPases); elongation factor G complement(1204217..1206295) Helicobacter pylori SouthAfrica7 12350081 YP_005771752.1 CDS HPSA_05880 NC_017361.1 1206307 1206774 R COG0049 Ribosomal protein S7; 30S ribosomal protein S7 complement(1206307..1206774) Helicobacter pylori SouthAfrica7 12350082 YP_005771753.1 CDS rpsL NC_017361.1 1206790 1207197 R COG0048 Ribosomal protein S12; 30S ribosomal protein S12 complement(1206790..1207197) Helicobacter pylori SouthAfrica7 12350083 YP_005771754.1 CDS HPSA_05890 NC_017361.1 1207286 1215958 R COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta/beta' complement(1207286..1215958) Helicobacter pylori SouthAfrica7 12350084 YP_005771755.1 CDS rplL NC_017361.1 1216178 1216555 R COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(1216178..1216555) Helicobacter pylori SouthAfrica7 12350085 YP_005771756.1 CDS rplJ NC_017361.1 1216598 1217080 R COG0244 Ribosomal protein L10; 50S ribosomal protein L10 complement(1216598..1217080) Helicobacter pylori SouthAfrica7 12350086 YP_005771757.1 CDS rplA NC_017361.1 1217188 1217892 R COG0081 Ribosomal protein L1; 50S ribosomal protein L1 complement(1217188..1217892) Helicobacter pylori SouthAfrica7 12350087 YP_005771758.1 CDS rplK NC_017361.1 1217942 1218367 R COG0080 Ribosomal protein L11; 50S ribosomal protein L11 complement(1217942..1218367) Helicobacter pylori SouthAfrica7 12350088 YP_005771759.1 CDS nusG NC_017361.1 1218384 1218911 R COG0250 Transcription antiterminator; transcription antitermination protein NusG complement(1218384..1218911) Helicobacter pylori SouthAfrica7 12350089 YP_005771760.1 CDS secE NC_017361.1 1218941 1219120 R COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE complement(1218941..1219120) Helicobacter pylori SouthAfrica7 12350090 YP_005771761.1 CDS rpmG NC_017361.1 1219377 1219535 R COG0267 Ribosomal protein L33; 50S ribosomal protein L33 complement(1219377..1219535) Helicobacter pylori SouthAfrica7 12350092 YP_005771762.1 CDS HPSA_05930 NC_017361.1 1219592 1220791 R COG0050 GTPases - translation elongation factors; elongation factor Tu complement(1219592..1220791) Helicobacter pylori SouthAfrica7 12350093 YP_005771763.1 CDS HPSA_05935 NC_017361.1 1221486 1223222 D COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC-transporter, ATP-binding domain 1221486..1223222 Helicobacter pylori SouthAfrica7 12350098 YP_005771764.1 CDS HPSA_05940 NC_017361.1 1223229 1223897 R COG0546 Predicted phosphatases; hypothetical protein complement(1223229..1223897) Helicobacter pylori SouthAfrica7 12350099 YP_005771765.1 CDS HPSA_05950 NC_017361.1 1224389 1224706 R COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C complement(1224389..1224706) Helicobacter pylori SouthAfrica7 12350102 YP_005771766.1 CDS HPSA_05955 NC_017361.1 1224838 1226904 R COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase complement(1224838..1226904) Helicobacter pylori SouthAfrica7 12350104 YP_005771767.1 CDS HPSA_05960 NC_017361.1 1226907 1227611 R COG1926 Predicted phosphoribosyltransferases; hypothetical protein complement(1226907..1227611) Helicobacter pylori SouthAfrica7 12350106 YP_005771768.1 CDS HPSA_05965 NC_017361.1 1227625 1229886 R COG1452 Organic solvent tolerance protein OstA; organic solvent tolerance protein complement(1227625..1229886) Helicobacter pylori SouthAfrica7 12350108 YP_005771769.1 CDS HPSA_05970 NC_017361.1 1229889 1230368 R hypothetical protein complement(1229889..1230368) Helicobacter pylori SouthAfrica7 12350110 YP_005771770.1 CDS HPSA_05975 NC_017361.1 1230408 1231682 R COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase complement(1230408..1231682) Helicobacter pylori SouthAfrica7 12350111 YP_005771771.1 CDS HPSA_05980 NC_017361.1 1232429 1232632 R hypothetical protein complement(1232429..1232632) Helicobacter pylori SouthAfrica7 12350112 YP_005771772.1 CDS HPSA_05985 NC_017361.1 1232633 1232785 D hypothetical protein 1232633..1232785 Helicobacter pylori SouthAfrica7 12350114 YP_005771773.1 CDS HPSA_05990 NC_017361.1 1233049 1233735 R COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein complement(1233049..1233735) Helicobacter pylori SouthAfrica7 12350116 YP_005771774.1 CDS HPSA_05995 NC_017361.1 1233729 1234436 R COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase complement(1233729..1234436) Helicobacter pylori SouthAfrica7 12350117 YP_005771775.1 CDS HPSA_06000 NC_017361.1 1234477 1237317 R COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase complement(1234477..1237317) Helicobacter pylori SouthAfrica7 12350118 YP_005771776.1 CDS HPSA_06005 NC_017361.1 1237389 1237727 D COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 1237389..1237727 Helicobacter pylori SouthAfrica7 12350119 YP_005771777.1 CDS hemD NC_017361.1 1237730 1238404 D COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 1237730..1238404 Helicobacter pylori SouthAfrica7 12350120 YP_005771778.1 CDS HPSA_06015 NC_017361.1 1238450 1238842 D COG0239 Integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB 1238450..1238842 Helicobacter pylori SouthAfrica7 12350121 YP_005771779.1 CDS HPSA_06020 NC_017361.1 1238901 1239938 R COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase complement(1238901..1239938) Helicobacter pylori SouthAfrica7 12350122 YP_005771780.1 CDS HPSA_06025 NC_017361.1 1240032 1240322 D COG2863 Cytochrome c553; cytochrome c-553 1240032..1240322 Helicobacter pylori SouthAfrica7 12350123 YP_005771781.1 CDS HPSA_06030 NC_017361.1 1240482 1240955 D COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dinucleoside polyphosphate hydrolase 1240482..1240955 Helicobacter pylori SouthAfrica7 12350124 YP_005771782.1 CDS HPSA_06035 NC_017361.1 1240949 1242166 D COG0527 Aspartokinases; aspartate kinase 1240949..1242166 Helicobacter pylori SouthAfrica7 12350125 YP_005771783.1 CDS HPSA_06040 NC_017361.1 1242163 1242705 D hypothetical protein 1242163..1242705 Helicobacter pylori SouthAfrica7 12350126 YP_005771784.1 CDS HPSA_06045 NC_017361.1 1242702 1243358 D COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1242702..1243358 Helicobacter pylori SouthAfrica7 12350127 YP_005771785.1 CDS HPSA_06050 NC_017361.1 1243355 1244497 D COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 1243355..1244497 Helicobacter pylori SouthAfrica7 12350128 YP_005771786.1 CDS HPSA_06055 NC_017361.1 1244811 1245272 R hypothetical protein complement(1244811..1245272) Helicobacter pylori SouthAfrica7 12350129 YP_005771787.1 CDS HPSA_06060 NC_017361.1 1245677 1246585 D COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative membrane transport protein 1245677..1246585 Helicobacter pylori SouthAfrica7 12350130 YP_005771788.1 CDS HPSA_06065 NC_017361.1 1246576 1247820 D hypothetical protein 1246576..1247820 Helicobacter pylori SouthAfrica7 12350131 YP_005771789.1 CDS HPSA_06070 NC_017361.1 1247898 1248449 D COG2952 Uncharacterized protein conserved in bacteria; hypothetical protein 1247898..1248449 Helicobacter pylori SouthAfrica7 12350132 YP_005771790.1 CDS HPSA_06075 NC_017361.1 1248449 1249576 D COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 1248449..1249576 Helicobacter pylori SouthAfrica7 12350133 YP_005771791.1 CDS amiF NC_017361.1 1249742 1250746 D COG0388 Predicted amidohydrolase; formamidase 1249742..1250746 Helicobacter pylori SouthAfrica7 12350134 YP_005771792.1 CDS HPSA_06085 NC_017361.1 1251228 1251704 R hypothetical protein complement(1251228..1251704) Helicobacter pylori SouthAfrica7 12350135 YP_005771793.1 CDS HPSA_06090 NC_017361.1 1251703 1251807 D hypothetical protein 1251703..1251807 Helicobacter pylori SouthAfrica7 12350136 YP_005771794.1 CDS HPSA_06095 NC_017361.1 1251828 1252391 R COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein complement(1251828..1252391) Helicobacter pylori SouthAfrica7 12350137 YP_005771795.1 CDS alaS NC_017361.1 1252393 1254936 R COG0013 Alanyl-tRNA synthetase; alanyl-tRNA synthetase complement(1252393..1254936) Helicobacter pylori SouthAfrica7 12350138 YP_005771796.1 CDS HPSA_06105 NC_017361.1 1255055 1255285 D COG2841 Uncharacterized protein conserved in bacteria; hypothetical protein 1255055..1255285 Helicobacter pylori SouthAfrica7 12350139 YP_005771797.1 CDS HPSA_06110 NC_017361.1 1256041 1258143 R outer membrane protein BabA complement(1256041..1258143) Helicobacter pylori SouthAfrica7 12350140 YP_005771798.1 CDS rpsR NC_017361.1 1258554 1258811 R COG0238 Ribosomal protein S18; 30S ribosomal protein S18 complement(1258554..1258811) Helicobacter pylori SouthAfrica7 12350141 YP_005771799.1 CDS HPSA_06120 NC_017361.1 1258835 1259380 R COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein complement(1258835..1259380) Helicobacter pylori SouthAfrica7 12350142 YP_005771800.1 CDS rpsF NC_017361.1 1259397 1259825 R COG0360 Ribosomal protein S6; 30S ribosomal protein S6 complement(1259397..1259825) Helicobacter pylori SouthAfrica7 12350143 YP_005771801.1 CDS HPSA_06130 NC_017361.1 1259978 1261000 R COG0593 ATPase involved in DNA replication initiation; DNA polymerase III subunit delta complement(1259978..1261000) Helicobacter pylori SouthAfrica7 12350144 YP_005771802.1 CDS HPSA_06135 NC_017361.1 1260990 1262924 R COG0557 Exoribonuclease R; ribonuclease R complement(1260990..1262924) Helicobacter pylori SouthAfrica7 12350145 YP_005771803.1 CDS aroE NC_017361.1 1262909 1263715 R COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase complement(1262909..1263715) Helicobacter pylori SouthAfrica7 12350146 YP_005771804.1 CDS HPSA_06145 NC_017361.1 1263723 1264307 R hypothetical protein complement(1263723..1264307) Helicobacter pylori SouthAfrica7 12350147 YP_005771805.1 CDS HPSA_06150 NC_017361.1 1264328 1265374 R COG4174 ABC-type uncharacterized transport system, permease component; oligopeptide ABC transporter permease complement(1264328..1265374) Helicobacter pylori SouthAfrica7 12350148 YP_005771806.1 CDS HPSA_06155 NC_017361.1 1265371 1267161 R COG4166 ABC-type oligopeptide transport system, periplasmic component; hypothetical protein complement(1265371..1267161) Helicobacter pylori SouthAfrica7 12350149 YP_005771807.1 CDS HPSA_06160 NC_017361.1 1267158 1268138 R COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase complement(1267158..1268138) Helicobacter pylori SouthAfrica7 12350150 YP_005771808.1 CDS HPSA_06165 NC_017361.1 1268210 1268929 R COG0500 SAM-dependent methyltransferases; biotin synthesis protein BioC complement(1268210..1268929) Helicobacter pylori SouthAfrica7 12350151 YP_005771809.1 CDS secG NC_017361.1 1269052 1269633 D COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG 1269052..1269633 Helicobacter pylori SouthAfrica7 12350152 YP_005771810.1 CDS frr NC_017361.1 1269633 1270190 D COG0233 Ribosome recycling factor; ribosome recycling factor 1269633..1270190 Helicobacter pylori SouthAfrica7 12350153 YP_005771811.1 CDS pyrE NC_017361.1 1270195 1270800 D COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 1270195..1270800 Helicobacter pylori SouthAfrica7 12350154 YP_005771812.1 CDS HPSA_06185 NC_017361.1 1270899 1271246 D COG1714 Predicted membrane protein/domain; hypothetical protein 1270899..1271246 Helicobacter pylori SouthAfrica7 12350155 YP_005771813.1 CDS HPSA_06190 NC_017361.1 1271243 1271932 D COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1271243..1271932 Helicobacter pylori SouthAfrica7 12350156 YP_005771814.1 CDS HPSA_06195 NC_017361.1 1272295 1272696 D COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH dehydrogenase subunit A 1272295..1272696 Helicobacter pylori SouthAfrica7 12350157 YP_005771815.1 CDS HPSA_06200 NC_017361.1 1272696 1273175 D COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B 1272696..1273175 Helicobacter pylori SouthAfrica7 12350158 YP_005771816.1 CDS HPSA_06205 NC_017361.1 1273175 1273972 D COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; NADH dehydrogenase subunit C 1273175..1273972 Helicobacter pylori SouthAfrica7 12350159 YP_005771817.1 CDS HPSA_06210 NC_017361.1 1273974 1275203 D COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; NADH dehydrogenase subunit D 1273974..1275203 Helicobacter pylori SouthAfrica7 12350160 YP_005771818.1 CDS HPSA_06215 NC_017361.1 1275200 1275430 D NADH dehydrogenase I subunit E 1275200..1275430 Helicobacter pylori SouthAfrica7 12350161 YP_005771819.1 CDS HPSA_06220 NC_017361.1 1275433 1276419 D NADH dehydrogenase I subunit F 1275433..1276419 Helicobacter pylori SouthAfrica7 12350162 YP_005771820.1 CDS HPSA_06225 NC_017361.1 1276416 1278965 D COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G 1276416..1278965 Helicobacter pylori SouthAfrica7 12350163 YP_005771821.1 CDS HPSA_06230 NC_017361.1 1278962 1279951 D COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH dehydrogenase subunit H 1278962..1279951 Helicobacter pylori SouthAfrica7 12350164 YP_005771822.1 CDS HPSA_06235 NC_017361.1 1279961 1280623 D COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I 1279961..1280623 Helicobacter pylori SouthAfrica7 12350165 YP_005771823.1 CDS HPSA_06240 NC_017361.1 1280616 1281164 D COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH dehydrogenase subunit J 1280616..1281164 Helicobacter pylori SouthAfrica7 12350166 YP_005771824.1 CDS HPSA_06245 NC_017361.1 1281161 1281463 D COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH dehydrogenase subunit K 1281161..1281463 Helicobacter pylori SouthAfrica7 12350167 YP_005771825.1 CDS HPSA_06250 NC_017361.1 1281466 1283304 D COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH dehydrogenase subunit L 1281466..1283304 Helicobacter pylori SouthAfrica7 12350742 YP_005771826.1 CDS HPSA_06255 NC_017361.1 1283308 1284846 D COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M 1283308..1284846 Helicobacter pylori SouthAfrica7 12350743 YP_005771827.1 CDS HPSA_06260 NC_017361.1 1284833 1286311 D COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH dehydrogenase subunit N 1284833..1286311 Helicobacter pylori SouthAfrica7 12350744 YP_005771828.1 CDS HPSA_06265 NC_017361.1 1286301 1288712 D COG1729 Uncharacterized protein conserved in bacteria; paralysed flagella protein 1286301..1288712 Helicobacter pylori SouthAfrica7 12350745 YP_005771829.1 CDS HPSA_06270 NC_017361.1 1288714 1290090 D COG1109 Phosphomannomutase; hypothetical protein 1288714..1290090 Helicobacter pylori SouthAfrica7 12350746 YP_005771830.1 CDS HPSA_06275 NC_017361.1 1290657 1291001 D hypothetical protein 1290657..1291001 Helicobacter pylori SouthAfrica7 12350747 YP_005771831.1 CDS trpA NC_017361.1 1291164 1291952 R COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha complement(1291164..1291952) Helicobacter pylori SouthAfrica7 12350748 YP_005771832.1 CDS HPSA_06285 NC_017361.1 1291949 1293130 R COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta complement(1291949..1293130) Helicobacter pylori SouthAfrica7 12350749 YP_005771833.1 CDS HPSA_06290 NC_017361.1 1293132 1294490 R COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase complement(1293132..1294490) Helicobacter pylori SouthAfrica7 12350750 YP_005771834.1 CDS trpD NC_017361.1 1294483 1295490 R COG0547 Anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase complement(1294483..1295490) Helicobacter pylori SouthAfrica7 12350751 YP_005771835.1 CDS HPSA_06300 NC_017361.1 1295487 1296071 R COG0512 Anthranilate/para-aminobenzoate synthases component II; anthranilate synthase component II complement(1295487..1296071) Helicobacter pylori SouthAfrica7 12350752 YP_005771836.1 CDS HPSA_06305 NC_017361.1 1296068 1297570 R COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I complement(1296068..1297570) Helicobacter pylori SouthAfrica7 12350753 YP_005771837.1 CDS HPSA_06310 NC_017361.1 1297811 1298869 R COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein complement(1297811..1298869) Helicobacter pylori SouthAfrica7 12350754 YP_005771838.1 CDS HPSA_06315 NC_017361.1 1298935 1299627 R COG2503 Predicted secreted acid phosphatase; acid phosphatase lipoprotein complement(1298935..1299627) Helicobacter pylori SouthAfrica7 12350755 YP_005771839.1 CDS HPSA_06320 NC_017361.1 1299797 1300345 D COG2353 Uncharacterized conserved protein; hypothetical protein 1299797..1300345 Helicobacter pylori SouthAfrica7 12350756 YP_005771840.1 CDS HPSA_06325 NC_017361.1 1300964 1301620 D COG0819 Putative transcription activator; putative transcriptional regulator 1300964..1301620 Helicobacter pylori SouthAfrica7 12350757 YP_005771841.1 CDS HPSA_06330 NC_017361.1 1301741 1302403 D COG3201 Nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter 1301741..1302403 Helicobacter pylori SouthAfrica7 12350758 YP_005771842.1 CDS HPSA_06335 NC_017361.1 1302391 1303005 D COG1564 Thiamine pyrophosphokinase; thiamine pyrophosphokinase 1302391..1303005 Helicobacter pylori SouthAfrica7 12350759 YP_005771843.1 CDS HPSA_06340 NC_017361.1 1303207 1303530 R hypothetical protein complement(1303207..1303530) Helicobacter pylori SouthAfrica7 12350760 YP_005771844.1 CDS HPSA_06345 NC_017361.1 1303553 1304362 R hypothetical protein complement(1303553..1304362) Helicobacter pylori SouthAfrica7 12350761 YP_005771845.1 CDS HPSA_06350 NC_017361.1 1304646 1304822 D hypothetical protein 1304646..1304822 Helicobacter pylori SouthAfrica7 12350762 YP_005771846.1 CDS rplQ NC_017361.1 1304962 1305312 R COG0203 Ribosomal protein L17; 50S ribosomal protein L17 complement(1304962..1305312) Helicobacter pylori SouthAfrica7 12350763 YP_005771847.1 CDS HPSA_06360 NC_017361.1 1305312 1306346 R COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha complement(1305312..1306346) Helicobacter pylori SouthAfrica7 12350764 YP_005771848.1 CDS rpsD NC_017361.1 1306358 1306984 R COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 complement(1306358..1306984) Helicobacter pylori SouthAfrica7 12350765 YP_005771849.1 CDS HPSA_06370 NC_017361.1 1306994 1307389 R COG0100 Ribosomal protein S11; 30S ribosomal protein S11 complement(1306994..1307389) Helicobacter pylori SouthAfrica7 12350766 YP_005771850.1 CDS rpsM NC_017361.1 1307412 1307774 R COG0099 Ribosomal protein S13; 30S ribosomal protein S13 complement(1307412..1307774) Helicobacter pylori SouthAfrica7 12350767 YP_005771851.1 CDS HPSA_06380 NC_017361.1 1307778 1307891 R COG0257 Ribosomal protein L36; hypothetical protein complement(1307778..1307891) Helicobacter pylori SouthAfrica7 12350768 YP_005771852.1 CDS infA NC_017361.1 1307970 1308188 R COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 complement(1307970..1308188) Helicobacter pylori SouthAfrica7 12350769 YP_005771853.1 CDS HPSA_06390 NC_017361.1 1308188 1308949 R COG0024 Methionine aminopeptidase; methionine aminopeptidase complement(1308188..1308949) Helicobacter pylori SouthAfrica7 12350770 YP_005771854.1 CDS secY NC_017361.1 1308949 1310211 R COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY complement(1308949..1310211) Helicobacter pylori SouthAfrica7 12350771 YP_005771855.1 CDS rplO NC_017361.1 1310254 1310655 R COG0200 Ribosomal protein L15; 50S ribosomal protein L15 complement(1310254..1310655) Helicobacter pylori SouthAfrica7 12350772 YP_005771856.1 CDS rpsE NC_017361.1 1310673 1311116 R COG0098 Ribosomal protein S5; 30S ribosomal protein S5 complement(1310673..1311116) Helicobacter pylori SouthAfrica7 12350773 YP_005771857.1 CDS rplR NC_017361.1 1311131 1311487 R COG0256 Ribosomal protein L18; 50S ribosomal protein L18 complement(1311131..1311487) Helicobacter pylori SouthAfrica7 12350774 YP_005771858.1 CDS rplF NC_017361.1 1311501 1312037 R COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 complement(1311501..1312037) Helicobacter pylori SouthAfrica7 12350775 YP_005771859.1 CDS rpsH NC_017361.1 1312048 1312443 R COG0096 Ribosomal protein S8; 30S ribosomal protein S8 complement(1312048..1312443) Helicobacter pylori SouthAfrica7 12350776 YP_005771860.1 CDS rpsN NC_017361.1 1312453 1312638 R COG0199 Ribosomal protein S14; 30S ribosomal protein S14 complement(1312453..1312638) Helicobacter pylori SouthAfrica7 12350777 YP_005771861.1 CDS rplE NC_017361.1 1312648 1313193 R COG0094 Ribosomal protein L5; 50S ribosomal protein L5 complement(1312648..1313193) Helicobacter pylori SouthAfrica7 12350778 YP_005771862.1 CDS rplX NC_017361.1 1313205 1313426 R COG0198 Ribosomal protein L24; 50S ribosomal protein L24 complement(1313205..1313426) Helicobacter pylori SouthAfrica7 12350779 YP_005771863.1 CDS rplN NC_017361.1 1313426 1313794 R COG0093 Ribosomal protein L14; 50S ribosomal protein L14 complement(1313426..1313794) Helicobacter pylori SouthAfrica7 12350780 YP_005771864.1 CDS rpsQ NC_017361.1 1313797 1314057 R COG0186 Ribosomal protein S17; 30S ribosomal protein S17 complement(1313797..1314057) Helicobacter pylori SouthAfrica7 12350781 YP_005771865.1 CDS HPSA_06450 NC_017361.1 1314071 1314271 R COG0255 Ribosomal protein L29; 50S ribosomal protein L29 complement(1314071..1314271) Helicobacter pylori SouthAfrica7 12350782 YP_005771866.1 CDS rplP NC_017361.1 1314258 1314683 R COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 complement(1314258..1314683) Helicobacter pylori SouthAfrica7 12350783 YP_005771867.1 CDS rpsC NC_017361.1 1314686 1315390 R COG0092 Ribosomal protein S3; 30S ribosomal protein S3 complement(1314686..1315390) Helicobacter pylori SouthAfrica7 12350784 YP_005771868.1 CDS rplV NC_017361.1 1315394 1315762 R COG0091 Ribosomal protein L22; 50S ribosomal protein L22 complement(1315394..1315762) Helicobacter pylori SouthAfrica7 12350785 YP_005771869.1 CDS rpsS NC_017361.1 1315772 1316053 R COG0185 Ribosomal protein S19; 30S ribosomal protein S19 complement(1315772..1316053) Helicobacter pylori SouthAfrica7 12350786 YP_005771870.1 CDS rplB NC_017361.1 1316065 1316895 R COG0090 Ribosomal protein L2; 50S ribosomal protein L2 complement(1316065..1316895) Helicobacter pylori SouthAfrica7 12350787 YP_005771871.1 CDS rplW NC_017361.1 1316911 1317192 R COG0089 Ribosomal protein L23; 50S ribosomal protein L23 complement(1316911..1317192) Helicobacter pylori SouthAfrica7 12350788 YP_005771872.1 CDS rplD NC_017361.1 1317196 1317843 R COG0088 Ribosomal protein L4; 50S ribosomal protein L4 complement(1317196..1317843) Helicobacter pylori SouthAfrica7 12350789 YP_005771873.1 CDS rplC NC_017361.1 1317877 1318452 R COG0087 Ribosomal protein L3; 50S ribosomal protein L3 complement(1317877..1318452) Helicobacter pylori SouthAfrica7 12350790 YP_005771874.1 CDS rpsJ NC_017361.1 1318486 1318800 R COG0051 Ribosomal protein S10; 30S ribosomal protein S10 complement(1318486..1318800) Helicobacter pylori SouthAfrica7 12350791 YP_005771875.1 CDS HPSA_06500 NC_017361.1 1319009 1320097 D COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 1319009..1320097 Helicobacter pylori SouthAfrica7 12350792 YP_005771876.1 CDS HPSA_06505 NC_017361.1 1320312 1320890 D hypothetical protein 1320312..1320890 Helicobacter pylori SouthAfrica7 12350793 YP_005771877.1 CDS rnhB NC_017361.1 1320864 1321478 R COG0164 Ribonuclease HII; ribonuclease HII complement(1320864..1321478) Helicobacter pylori SouthAfrica7 12350794 YP_005771878.1 CDS HPSA_06515 NC_017361.1 1321509 1321700 R hypothetical protein complement(1321509..1321700) Helicobacter pylori SouthAfrica7 12350795 YP_005771879.1 CDS fumC NC_017361.1 1321784 1323175 R COG0114 Fumarase; fumarate hydratase complement(1321784..1323175) Helicobacter pylori SouthAfrica7 12350796 YP_005771880.1 CDS HPSA_06525 NC_017361.1 1323362 1323739 D hypothetical protein 1323362..1323739 Helicobacter pylori SouthAfrica7 12350797 YP_005771881.1 CDS HPSA_06530 NC_017361.1 1323750 1324985 D hypothetical protein 1323750..1324985 Helicobacter pylori SouthAfrica7 12350798 YP_005771882.1 CDS HPSA_06535 NC_017361.1 1324982 1325977 D COG0845 Membrane-fusion protein; cation efflux system protein 1324982..1325977 Helicobacter pylori SouthAfrica7 12350799 YP_005771883.1 CDS HPSA_06540 NC_017361.1 1325980 1329078 D COG3696 Putative silver efflux pump; cation efflux system protein 1325980..1329078 Helicobacter pylori SouthAfrica7 12350800 YP_005771884.1 CDS HPSA_06545 NC_017361.1 1329124 1329465 R COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance); hypothetical protein complement(1329124..1329465) Helicobacter pylori SouthAfrica7 12350801 YP_005771885.1 CDS HPSA_06550 NC_017361.1 1329459 1330145 R COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); putative branched-chain amino acid transport protein AzlC; putative membrane protein complement(1329459..1330145) Helicobacter pylori SouthAfrica7 12350802 YP_005771886.1 CDS HPSA_06555 NC_017361.1 1330156 1331265 R COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ complement(1330156..1331265) Helicobacter pylori SouthAfrica7 12350803 YP_005771887.1 CDS HPSA_06560 NC_017361.1 1331392 1332540 D hypothetical protein 1331392..1332540 Helicobacter pylori SouthAfrica7 12350804 YP_005771888.1 CDS mnmA NC_017361.1 1332586 1333614 R COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA complement(1332586..1333614) Helicobacter pylori SouthAfrica7 12350805 YP_005771889.1 CDS HPSA_06570 NC_017361.1 1333753 1334514 D COG2214 DnaJ-class molecular chaperone; hypothetical protein 1333753..1334514 Helicobacter pylori SouthAfrica7 12350806 YP_005771890.1 CDS HPSA_06575 NC_017361.1 1334511 1335026 R COG1057 Nicotinic acid mononucleotide adenylyltransferase; hypothetical protein complement(1334511..1335026) Helicobacter pylori SouthAfrica7 12350807 YP_005771891.1 CDS HPSA_06580 NC_017361.1 1335019 1335465 R COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator complement(1335019..1335465) Helicobacter pylori SouthAfrica7 12350808 YP_005771892.1 CDS HPSA_06585 NC_017361.1 1335800 1336237 D COG0811 Biopolymer transport proteins; biopolymer transport protein 1335800..1336237 Helicobacter pylori SouthAfrica7 12350809 YP_005771893.1 CDS HPSA_06590 NC_017361.1 1336234 1336623 D COG0848 Biopolymer transport protein; biopolymer transport protein exbD 1336234..1336623 Helicobacter pylori SouthAfrica7 12350810 YP_005771894.1 CDS HPSA_06595 NC_017361.1 1336589 1337425 D COG0810 Periplasmic protein TonB, links inner and outer membranes; siderophore-mediated iron transport protein 1336589..1337425 Helicobacter pylori SouthAfrica7 12350811 YP_005771895.1 CDS HPSA_06600 NC_017361.1 1337601 1339688 D hypothetical protein 1337601..1339688 Helicobacter pylori SouthAfrica7 12350812 YP_005771896.1 CDS HPSA_06605 NC_017361.1 1340282 1341271 R COG3392 Adenine-specific DNA methylase; adenine-specific methyltransferase complement(1340282..1341271) Helicobacter pylori SouthAfrica7 12350813 YP_005771897.1 CDS HPSA_06610 NC_017361.1 1341280 1341966 R ulcer-associated protein restriction endonuclease (iceA) complement(1341280..1341966) Helicobacter pylori SouthAfrica7 12350814 YP_005771898.1 CDS HPSA_06615 NC_017361.1 1342049 1342597 R COG1045 Serine acetyltransferase; serine acetyltransferase complement(1342049..1342597) Helicobacter pylori SouthAfrica7 12350815 YP_005771899.1 CDS HPSA_06620 NC_017361.1 1342594 1342758 R hypothetical protein complement(1342594..1342758) Helicobacter pylori SouthAfrica7 12350816 YP_005771900.1 CDS HPSA_06625 NC_017361.1 1343001 1343186 R hypothetical protein complement(1343001..1343186) Helicobacter pylori SouthAfrica7 12350817 YP_005771901.1 CDS HPSA_06630 NC_017361.1 1347604 1347819 R hypothetical protein complement(1347604..1347819) Helicobacter pylori SouthAfrica7 12350820 YP_005771902.1 CDS HPSA_06635 NC_017361.1 1348037 1348483 R COG0780 Enzyme related to GTP cyclohydrolase I; 7-cyano-7-deazaguanine reductase complement(1348037..1348483) Helicobacter pylori SouthAfrica7 12350821 YP_005771903.1 CDS HPSA_06640 NC_017361.1 1348542 1348883 D COG0799 Uncharacterized homolog of plant Iojap protein; iojap-like protein 1348542..1348883 Helicobacter pylori SouthAfrica7 12350822 YP_005771904.1 CDS miaA NC_017361.1 1348975 1349790 D COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1348975..1349790 Helicobacter pylori SouthAfrica7 12350823 YP_005771905.1 CDS murB NC_017361.1 1352766 1353545 R COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1352766..1353545) Helicobacter pylori SouthAfrica7 12350824 YP_005771906.1 CDS fliQ NC_017361.1 1353549 1353815 R COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ complement(1353549..1353815) Helicobacter pylori SouthAfrica7 12350825 YP_005771907.1 CDS fliI NC_017361.1 1353826 1355130 R COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase complement(1353826..1355130) Helicobacter pylori SouthAfrica7 12350826 YP_005771908.1 CDS HPSA_06685 NC_017361.1 1355131 1356045 R COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase complement(1355131..1356045) Helicobacter pylori SouthAfrica7 12350828 YP_005771909.1 CDS HPSA_06700 NC_017361.1 1358870 1359127 R COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); hypothetical protein complement(1358870..1359127) Helicobacter pylori SouthAfrica7 12350830 YP_005771910.1 CDS HPSA_06705 NC_017361.1 1359229 1359849 D hypothetical protein 1359229..1359849 Helicobacter pylori SouthAfrica7 12350831 YP_005771911.1 CDS HPSA_06710 NC_017361.1 1359929 1360021 D hypothetical protein 1359929..1360021 Helicobacter pylori SouthAfrica7 12350832 YP_005771912.1 CDS HPSA_06715 NC_017361.1 1360009 1360839 R hypothetical protein complement(1360009..1360839) Helicobacter pylori SouthAfrica7 12350833 YP_005771913.1 CDS HPSA_06720 NC_017361.1 1361105 1361332 R hypothetical protein complement(1361105..1361332) Helicobacter pylori SouthAfrica7 12350834 YP_005771914.1 CDS HPSA_06725 NC_017361.1 1361494 1362567 R COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N complement(1361494..1362567) Helicobacter pylori SouthAfrica7 12350835 YP_005771915.1 CDS HPSA_06730 NC_017361.1 1362564 1363553 R COG0794 Predicted sugar phosphate isomerase involved in capsule formation; hypothetical protein complement(1362564..1363553) Helicobacter pylori SouthAfrica7 12350836 YP_005771916.1 CDS HPSA_06735 NC_017361.1 1363537 1365615 R COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain; ribonuclease J complement(1363537..1365615) Helicobacter pylori SouthAfrica7 12350837 YP_005771917.1 CDS ksgA NC_017361.1 1365652 1366467 R COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase complement(1365652..1366467) Helicobacter pylori SouthAfrica7 12350838 YP_005771918.1 CDS HPSA_06745 NC_017361.1 1366527 1366664 D hypothetical protein 1366527..1366664 Helicobacter pylori SouthAfrica7 12350839 YP_005771919.1 CDS HPSA_06750 NC_017361.1 1366727 1366975 D hypothetical protein 1366727..1366975 Helicobacter pylori SouthAfrica7 12350840 YP_005771920.1 CDS HPSA_06765 NC_017361.1 1369992 1370873 R COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate hydrolase complement(1369992..1370873) Helicobacter pylori SouthAfrica7 12350841 YP_005771921.1 CDS HPSA_06770 NC_017361.1 1370876 1371754 R COG0616 Periplasmic serine proteases (ClpP class); Signal peptide protease IV (Protease IV) (Endopeptidase IV) complement(1370876..1371754) Helicobacter pylori SouthAfrica7 12350842 YP_005771922.1 CDS HPSA_06775 NC_017361.1 1371825 1372064 D hypothetical protein 1371825..1372064 Helicobacter pylori SouthAfrica7 12350843 YP_005771923.1 CDS HPSA_06780 NC_017361.1 1372273 1372965 D hypothetical protein 1372273..1372965 Helicobacter pylori SouthAfrica7 12350844 YP_005771924.1 CDS HPSA_06795 NC_017361.1 1374073 1374501 D hypothetical protein 1374073..1374501 Helicobacter pylori SouthAfrica7 12350845 YP_005771925.1 CDS HPSA_06800 NC_017361.1 1377553 1378332 R hypothetical protein complement(1377553..1378332) Helicobacter pylori SouthAfrica7 12350847 YP_005771926.1 CDS HPSA_06805 NC_017361.1 1378467 1378955 D COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) 1378467..1378955 Helicobacter pylori SouthAfrica7 12350848 YP_005771927.1 CDS HPSA_06810 NC_017361.1 1378969 1379199 D COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator 1378969..1379199 Helicobacter pylori SouthAfrica7 12350849 YP_005771928.1 CDS HPSA_06815 NC_017361.1 1379196 1380002 D COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1379196..1380002 Helicobacter pylori SouthAfrica7 12350850 YP_005771929.1 CDS smpB NC_017361.1 1379999 1380457 D COG0691 tmRNA-binding protein; SsrA-binding protein 1379999..1380457 Helicobacter pylori SouthAfrica7 12350851 YP_005771930.1 CDS HPSA_06825 NC_017361.1 1380460 1380912 D COG0811 Biopolymer transport proteins; biopolymer transport protein 1380460..1380912 Helicobacter pylori SouthAfrica7 12350852 YP_005771931.1 CDS HPSA_06830 NC_017361.1 1380923 1381324 D COG0848 Biopolymer transport protein; biopolymer transport protein 1380923..1381324 Helicobacter pylori SouthAfrica7 12350853 YP_005771932.1 CDS rpmH NC_017361.1 1381396 1381530 D COG0230 Ribosomal protein L34; 50S ribosomal protein L34 1381396..1381530 Helicobacter pylori SouthAfrica7 12350854 YP_005771933.1 CDS HPSA_06840 NC_017361.1 1381490 1381975 D COG0594 RNase P protein component; ribonuclease P protein component 1381490..1381975 Helicobacter pylori SouthAfrica7 12350856 YP_005771934.1 CDS HPSA_06845 NC_017361.1 1381962 1382303 D COG0759 Uncharacterized conserved protein; hypothetical protein 1381962..1382303 Helicobacter pylori SouthAfrica7 12350857 YP_005771935.1 CDS HPSA_06850 NC_017361.1 1382309 1383955 D COG0706 Preprotein translocase subunit YidC; putative inner membrane protein translocase component YidC 1382309..1383955 Helicobacter pylori SouthAfrica7 12350858 YP_005771936.1 CDS trmE NC_017361.1 1384723 1386075 D COG0486 Predicted GTPase; tRNA modification GTPase TrmE 1384723..1386075 Helicobacter pylori SouthAfrica7 12350859 YP_005771937.1 CDS HPSA_06870 NC_017361.1 1386281 1388521 D Outer membrane protein HomD; putative signal peptide 1386281..1388521 Helicobacter pylori SouthAfrica7 12350860 YP_005771938.1 CDS HPSA_06875 NC_017361.1 1388813 1390891 D hypothetical protein 1388813..1390891 Helicobacter pylori SouthAfrica7 12350861 YP_005771939.1 CDS HPSA_06880 NC_017361.1 1390905 1391000 R hypothetical protein complement(1390905..1391000) Helicobacter pylori SouthAfrica7 12350862 YP_005771940.1 CDS HPSA_06885 NC_017361.1 1391234 1391458 R putative endonuclease complement(1391234..1391458) Helicobacter pylori SouthAfrica7 12350863 YP_005771941.1 CDS HPSA_06890 NC_017361.1 1391733 1392644 R hypothetical protein complement(1391733..1392644) Helicobacter pylori SouthAfrica7 12350864 YP_005771942.1 CDS HPSA_06895 NC_017361.1 1392654 1392995 R hypothetical protein complement(1392654..1392995) Helicobacter pylori SouthAfrica7 12350865 YP_005771943.1 CDS HPSA_06900 NC_017361.1 1393003 1393530 R membrane-associated lipoprotein complement(1393003..1393530) Helicobacter pylori SouthAfrica7 12350866 YP_005771944.1 CDS HPSA_06905 NC_017361.1 1393556 1394188 R hypothetical protein complement(1393556..1394188) Helicobacter pylori SouthAfrica7 12350867 YP_005771945.1 CDS HPSA_06910 NC_017361.1 1394615 1394929 R COG0526 Thiol-disulfide isomerase and thioredoxins; hypothetical protein complement(1394615..1394929) Helicobacter pylori SouthAfrica7 12350868 YP_005771946.1 CDS HPSA_06915 NC_017361.1 1394986 1395750 R COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; hypothetical protein complement(1394986..1395750) Helicobacter pylori SouthAfrica7 12350869 YP_005771947.1 CDS dnaE NC_017361.1 1395747 1399382 R COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha complement(1395747..1399382) Helicobacter pylori SouthAfrica7 12350870 YP_005771948.1 CDS HPSA_06925 NC_017361.1 1399529 1400581 D COG1858 Cytochrome c peroxidase; cytochrome c551 peroxidase 1399529..1400581 Helicobacter pylori SouthAfrica7 12350871 YP_005771949.1 CDS HPSA_06930 NC_017361.1 1401006 1401593 R COG3187 Heat shock protein; putative secreted motility protein complement(1401006..1401593) Helicobacter pylori SouthAfrica7 12350872 YP_005771950.1 CDS HPSA_06935 NC_017361.1 1401610 1402287 R hypothetical protein complement(1401610..1402287) Helicobacter pylori SouthAfrica7 12350873 YP_005771951.1 CDS HPSA_06940 NC_017361.1 1402290 1403105 R COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; ABC transport system substrate binding protein complement(1402290..1403105) Helicobacter pylori SouthAfrica7 12350874 YP_005771952.1 CDS HPSA_06945 NC_017361.1 1403090 1403878 R COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein complement(1403090..1403878) Helicobacter pylori SouthAfrica7 12350875 YP_005771953.1 CDS HPSA_06950 NC_017361.1 1403875 1405008 R COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; putative ABC transport system permease complement(1403875..1405008) Helicobacter pylori SouthAfrica7 12350876 YP_005771954.1 CDS HPSA_06955 NC_017361.1 1405030 1405158 R hypothetical protein complement(1405030..1405158) Helicobacter pylori SouthAfrica7 12350877 YP_005771955.1 CDS HPSA_06960 NC_017361.1 1405142 1405837 D outer membrane protein 1405142..1405837 Helicobacter pylori SouthAfrica7 12350878 YP_005771956.1 CDS HPSA_06965 NC_017361.1 1405927 1406949 R COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase complement(1405927..1406949) Helicobacter pylori SouthAfrica7 12350879 YP_005771957.1 CDS HPSA_06970 NC_017361.1 1407242 1408003 R outer membrane protein (omp31) complement(1407242..1408003) Helicobacter pylori SouthAfrica7 12350880 YP_005771958.1 CDS HPSA_06975 NC_017361.1 1408118 1410619 R COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I complement(1408118..1410619) Helicobacter pylori SouthAfrica7 12350881 YP_005771959.1 CDS HPSA_06980 NC_017361.1 1410595 1410798 R COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I complement(1410595..1410798) Helicobacter pylori SouthAfrica7 12350882 YP_005771960.1 CDS HPSA_06995 NC_017361.1 1412095 1414134 R COG0286 Type I restriction-modification system methyltransferase subunit; type II restriction modification enzyme methyltransferase complement(1412095..1414134) Helicobacter pylori SouthAfrica7 12350883 YP_005771961.1 CDS HPSA_07000 NC_017361.1 1414166 1414741 R hypothetical protein complement(1414166..1414741) Helicobacter pylori SouthAfrica7 12350884 YP_005771962.1 CDS tmk NC_017361.1 1414729 1415304 R COG0125 Thymidylate kinase; thymidylate kinase complement(1414729..1415304) Helicobacter pylori SouthAfrica7 12350885 YP_005771963.1 CDS coaD NC_017361.1 1415306 1415779 R COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase complement(1415306..1415779) Helicobacter pylori SouthAfrica7 12350886 YP_005771964.1 CDS HPSA_07015 NC_017361.1 1415779 1416342 R COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(1415779..1416342) Helicobacter pylori SouthAfrica7 12350887 YP_005771965.1 CDS HPSA_07020 NC_017361.1 1416323 1416427 D hypothetical protein 1416323..1416427 Helicobacter pylori SouthAfrica7 12350888 YP_005771966.1 CDS flgA NC_017361.1 1416352 1417008 R COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA complement(1416352..1417008) Helicobacter pylori SouthAfrica7 12350889 YP_005771967.1 CDS HPSA_07030 NC_017361.1 1417005 1419050 R COG0210 Superfamily I DNA and RNA helicases; DNA helicase II complement(1417005..1419050) Helicobacter pylori SouthAfrica7 12350890 YP_005771968.1 CDS HPSA_07035 NC_017361.1 1419050 1421599 R COG0457 FOG: TPR repeat; hypothetical protein complement(1419050..1421599) Helicobacter pylori SouthAfrica7 12350891 YP_005771969.1 CDS HPSA_07040 NC_017361.1 1421609 1422856 R COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase complement(1421609..1422856) Helicobacter pylori SouthAfrica7 12350892 YP_005771970.1 CDS HPSA_07045 NC_017361.1 1422849 1423649 R COG0388 Predicted amidohydrolase; hypothetical protein complement(1422849..1423649) Helicobacter pylori SouthAfrica7 12350893 YP_005771971.1 CDS HPSA_07050 NC_017361.1 1423653 1423913 R COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit complement(1423653..1423913) Helicobacter pylori SouthAfrica7 12350894 YP_005771972.1 CDS ubiE NC_017361.1 1423925 1424662 R COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase complement(1423925..1424662) Helicobacter pylori SouthAfrica7 12350895 YP_005771973.1 CDS HPSA_07060 NC_017361.1 1424672 1425118 R COG1981 Predicted membrane protein; hypothetical protein complement(1424672..1425118) Helicobacter pylori SouthAfrica7 12350896 YP_005771974.1 CDS HPSA_07065 NC_017361.1 1425130 1425702 R COG1739 Uncharacterized conserved protein; X-Pro dipeptidase complement(1425130..1425702) Helicobacter pylori SouthAfrica7 12350897 YP_005771975.1 CDS HPSA_07070 NC_017361.1 1425689 1426819 R COG0842 ABC-type multidrug transport system, permease component; antibiotic transport system permease complement(1425689..1426819) Helicobacter pylori SouthAfrica7 12350898 YP_005771976.1 CDS HPSA_07075 NC_017361.1 1426816 1427913 R COG0842 ABC-type multidrug transport system, permease component; hypothetical protein complement(1426816..1427913) Helicobacter pylori SouthAfrica7 12350899 YP_005771977.1 CDS HPSA_07080 NC_017361.1 1427923 1428912 R COG0845 Membrane-fusion protein; secreted protein complement(1427923..1428912) Helicobacter pylori SouthAfrica7 12350900 YP_005771978.1 CDS HPSA_07085 NC_017361.1 1428924 1430456 R COG1538 Outer membrane protein; lipase-like protein complement(1428924..1430456) Helicobacter pylori SouthAfrica7 12350901 YP_005771979.1 CDS HPSA_07090 NC_017361.1 1430453 1431802 R COG1253 Hemolysins and related proteins containing CBS domains; hypothetical protein complement(1430453..1431802) Helicobacter pylori SouthAfrica7 12350902 YP_005771980.1 CDS HPSA_07095 NC_017361.1 1431905 1433506 R COG0306 Phosphate/sulphate permeases; phosphate permease complement(1431905..1433506) Helicobacter pylori SouthAfrica7 12350903 YP_005771981.1 CDS HPSA_07100 NC_017361.1 1433647 1433916 D COG0694 Thioredoxin-like proteins and domains; putative nifU-like protein 1433647..1433916 Helicobacter pylori SouthAfrica7 12350904 YP_005771982.1 CDS HPSA_07105 NC_017361.1 1433929 1434540 D hypothetical protein 1433929..1434540 Helicobacter pylori SouthAfrica7 12350905 YP_005771983.1 CDS murE NC_017361.1 1434543 1435886 D COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1434543..1435886 Helicobacter pylori SouthAfrica7 12350906 YP_005771984.1 CDS HPSA_07115 NC_017361.1 1435889 1436839 D COG0176 Transaldolase; transaldolase 1435889..1436839 Helicobacter pylori SouthAfrica7 12350907 YP_005771985.1 CDS HPSA_07120 NC_017361.1 1436894 1437430 D COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25/general stress protein Ctc 1436894..1437430 Helicobacter pylori SouthAfrica7 12350908 YP_005771986.1 CDS HPSA_07125 NC_017361.1 1437440 1438000 D COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1437440..1438000 Helicobacter pylori SouthAfrica7 12350909 YP_005771987.1 CDS HPSA_07130 NC_017361.1 1438010 1439077 D COG0795 Predicted permeases; putative permease; putative membrane protein 1438010..1439077 Helicobacter pylori SouthAfrica7 12350910 YP_005771988.1 CDS HPSA_07135 NC_017361.1 1439215 1440129 D COG3886 Predicted HKD family nuclease; hypothetical protein 1439215..1440129 Helicobacter pylori SouthAfrica7 12350911 YP_005771989.1 CDS HPSA_07150 NC_017361.1 1441660 1442898 R outer membrane protein (omp32) complement(1441660..1442898) Helicobacter pylori SouthAfrica7 12350912 YP_005771990.1 CDS HPSA_07155 NC_017361.1 1443005 1443442 D COG3399 Uncharacterized protein conserved in bacteria; hypothetical protein 1443005..1443442 Helicobacter pylori SouthAfrica7 12350913 YP_005771991.1 CDS HPSA_07160 NC_017361.1 1443439 1445778 R COG2217 Cation transport ATPase; cation transporter E1-E2 family ATPase complement(1443439..1445778) Helicobacter pylori SouthAfrica7 12350914 YP_005771992.1 CDS HPSA_07165 NC_017361.1 1445788 1446504 R COG4123 Predicted O-methyltransferase; hypothetical protein complement(1445788..1446504) Helicobacter pylori SouthAfrica7 12350915 YP_005771993.1 CDS HPSA_07170 NC_017361.1 1446486 1447520 R COG0117 Pyrimidine deaminase; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase complement(1446486..1447520) Helicobacter pylori SouthAfrica7 12350916 YP_005771994.1 CDS HPSA_07175 NC_017361.1 1447517 1448743 R COG0786 Na+/glutamate symporter; glutamate permease complement(1447517..1448743) Helicobacter pylori SouthAfrica7 12350917 YP_005771995.1 CDS HPSA_07180 NC_017361.1 1448829 1450028 D COG1748 Saccharopine dehydrogenase and related proteins; hypothetical protein 1448829..1450028 Helicobacter pylori SouthAfrica7 12350918 YP_005771996.1 CDS HPSA_07185 NC_017361.1 1450038 1451408 R COG0348 Polyferredoxin; ferredoxin-like protein complement(1450038..1451408) Helicobacter pylori SouthAfrica7 12350919 YP_005771997.1 CDS HPSA_07190 NC_017361.1 1451514 1452176 D COG0344 Predicted membrane protein; putative glycerol-3-phosphate acyltransferase PlsY 1451514..1452176 Helicobacter pylori SouthAfrica7 12350920 YP_005771998.1 CDS HPSA_07195 NC_017361.1 1452173 1452526 D COG1539 Dihydroneopterin aldolase; dihydroneopterin aldolase 1452173..1452526 Helicobacter pylori SouthAfrica7 12350921 YP_005771999.1 CDS HPSA_07200 NC_017361.1 1452510 1452836 D hypothetical protein 1452510..1452836 Helicobacter pylori SouthAfrica7 12350922 YP_005772000.1 CDS HPSA_07205 NC_017361.1 1452989 1455625 D COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 1452989..1455625 Helicobacter pylori SouthAfrica7 12350923 YP_005772001.1 CDS HPSA_07210 NC_017361.1 1455839 1457017 D COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase 1455839..1457017 Helicobacter pylori SouthAfrica7 12350924 YP_005772002.1 CDS nusA NC_017361.1 1457109 1458296 D COG0195 Transcription elongation factor; transcription elongation factor NusA 1457109..1458296 Helicobacter pylori SouthAfrica7 12350925 YP_005772003.1 CDS HPSA_07220 NC_017361.1 1458351 1458818 D hypothetical protein 1458351..1458818 Helicobacter pylori SouthAfrica7 12350926 YP_005772004.1 CDS HPSA_07225 NC_017361.1 1458939 1459034 D hypothetical protein 1458939..1459034 Helicobacter pylori SouthAfrica7 12350927 YP_005772005.1 CDS HPSA_07230 NC_017361.1 1459364 1459462 D hypothetical protein 1459364..1459462 Helicobacter pylori SouthAfrica7 12350928 YP_005772006.1 CDS HPSA_07235 NC_017361.1 1459808 1459954 R COG1002 Type II restriction enzyme, methylase subunits; type IIS restriction enzyme R and M protein complement(1459808..1459954) Helicobacter pylori SouthAfrica7 12350929 YP_005772007.1 CDS HPSA_07240 NC_017361.1 1459962 1463558 R COG1002 Type II restriction enzyme, methylase subunits; putative type IIS restriction-modification protein complement(1459962..1463558) Helicobacter pylori SouthAfrica7 12350930 YP_005772008.1 CDS HPSA_07245 NC_017361.1 1463560 1463847 R hypothetical protein complement(1463560..1463847) Helicobacter pylori SouthAfrica7 12350931 YP_005772009.1 CDS HPSA_07260 NC_017361.1 1466956 1467546 R COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system methylation subunit protein 2 complement(1466956..1467546) Helicobacter pylori SouthAfrica7 12350932 YP_005772010.1 CDS HPSA_07265 NC_017361.1 1467543 1468856 R COG2189 Adenine specific DNA methylase Mod; type III DNA modification enzyme (methyltransferase) complement(1467543..1468856) Helicobacter pylori SouthAfrica7 12350933 YP_005772011.1 CDS HPSA_07270 NC_017361.1 1468907 1470772 R COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG complement(1468907..1470772) Helicobacter pylori SouthAfrica7 12350934 YP_005772012.1 CDS HPSA_07275 NC_017361.1 1470854 1471201 D hypothetical protein 1470854..1471201 Helicobacter pylori SouthAfrica7 12350935 YP_005772013.1 CDS HPSA_07280 NC_017361.1 1471205 1471840 D putative outer membrane protein 1471205..1471840 Helicobacter pylori SouthAfrica7 12350936 YP_005772014.1 CDS HPSA_07285 NC_017361.1 1471837 1472589 R COG0708 Exonuclease III; exodeoxyribonuclease III complement(1471837..1472589) Helicobacter pylori SouthAfrica7 12350937 YP_005772015.1 CDS HPSA_07295 NC_017361.1 1472768 1474210 R hypothetical protein complement(1472768..1474210) Helicobacter pylori SouthAfrica7 12350939 YP_005772016.1 CDS dnaA NC_017361.1 1474440 1475807 R COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein complement(1474440..1475807) Helicobacter pylori SouthAfrica7 12350940 YP_005772017.1 CDS HPSA_07305 NC_017361.1 1475961 1476503 D COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 1475961..1476503 Helicobacter pylori SouthAfrica7 12350941 YP_005772018.1 CDS HPSA_07310 NC_017361.1 1476538 1476777 D hypothetical protein 1476538..1476777 Helicobacter pylori SouthAfrica7 12350942 YP_005772019.1 CDS HPSA_07315 NC_017361.1 1476778 1478571 D COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 1476778..1478571 Helicobacter pylori SouthAfrica7 12350943 YP_005772020.1 CDS thyX NC_017361.1 1478597 1479223 D COG1351 Predicted alternative thymidylate synthase; FAD-dependent thymidylate synthase 1478597..1479223 Helicobacter pylori SouthAfrica7 12350944 YP_005772021.1 CDS HPSA_07325 NC_017361.1 1479693 1479785 D hypothetical protein 1479693..1479785 Helicobacter pylori SouthAfrica7 12350945 YP_005772022.1 CDS HPSA_07330 NC_017361.1 1479818 1481011 R COG0732 Restriction endonuclease S subunits; restriction modification system DNA specificity domain-containing protein complement(1479818..1481011) Helicobacter pylori SouthAfrica7 12350946 YP_005772023.1 CDS HPSA_07335 NC_017361.1 1480999 1481775 R hypothetical protein complement(1480999..1481775) Helicobacter pylori SouthAfrica7 12350947 YP_005772024.1 CDS HPSA_07340 NC_017361.1 1481862 1484315 R COG0286 Type I restriction-modification system methyltransferase subunit; type I restriction enzyme M protein (hsdM) complement(1481862..1484315) Helicobacter pylori SouthAfrica7 12350948 YP_005772025.1 CDS HPSA_07345 NC_017361.1 1484386 1487361 D COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; typeI restriction enzyme R protein 1484386..1487361 Helicobacter pylori SouthAfrica7 12350949 YP_005772026.1 CDS HPSA_07350 NC_017361.1 1487362 1488069 D COG1451 Predicted metal-dependent hydrolase; hypothetical protein 1487362..1488069 Helicobacter pylori SouthAfrica7 12350950 YP_005772027.1 CDS HPSA_07355 NC_017361.1 1488541 1488708 R hypothetical protein complement(1488541..1488708) Helicobacter pylori SouthAfrica7 12350951 YP_005772028.1 CDS HPSA_07360 NC_017361.1 1488840 1488977 R hypothetical protein complement(1488840..1488977) Helicobacter pylori SouthAfrica7 12350952 YP_005772029.1 CDS HPSA_07365 NC_017361.1 1489152 1491677 R COG1629 Outer membrane receptor proteins, mostly Fe transport; iron(III) dicitrate transport protein (fecA) complement(1489152..1491677) Helicobacter pylori SouthAfrica7 12350953 YP_005772030.1 CDS HPSA_07370 NC_017361.1 1492018 1492986 R COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; arginase complement(1492018..1492986) Helicobacter pylori SouthAfrica7 12350954 YP_005772031.1 CDS HPSA_07375 NC_017361.1 1493190 1494332 D COG0686 Alanine dehydrogenase; alanine dehydrogenase 1493190..1494332 Helicobacter pylori SouthAfrica7 12350955 YP_005772032.1 CDS HPSA_07380 NC_017361.1 1494646 1495743 D COG1064 Zn-dependent alcohol dehydrogenases; NADP-dependent alcohol dehydrogenase 1494646..1495743 Helicobacter pylori SouthAfrica7 12350956 YP_005772033.1 CDS HPSA_07385 NC_017361.1 1496008 1497627 D COG1479 Uncharacterized conserved protein; hypothetical protein 1496008..1497627 Helicobacter pylori SouthAfrica7 12350957 YP_005772034.1 CDS HPSA_07390 NC_017361.1 1497669 1498397 R putative outer membrane protein complement(1497669..1498397) Helicobacter pylori SouthAfrica7 12350958 YP_005772035.1 CDS HPSA_07395 NC_017361.1 1498583 1499434 D COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 1498583..1499434 Helicobacter pylori SouthAfrica7 12350959 YP_005772036.1 CDS HPSA_07400 NC_017361.1 1499464 1501038 D COG0497 ATPase involved in DNA repair; DNA repair protein RecN 1499464..1501038 Helicobacter pylori SouthAfrica7 12350960 YP_005772037.1 CDS HPSA_07405 NC_017361.1 1501035 1502342 D COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; fibronectin/fibrinogen-binding protein 1501035..1502342 Helicobacter pylori SouthAfrica7 12350961 YP_005772038.1 CDS HPSA_07410 NC_017361.1 1502362 1502658 D hypothetical protein 1502362..1502658 Helicobacter pylori SouthAfrica7 12350962 YP_005772039.1 CDS HPSA_07415 NC_017361.1 1502792 1503769 D COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1502792..1503769 Helicobacter pylori SouthAfrica7 12350963 YP_005772040.1 CDS HPSA_07420 NC_017361.1 1503808 1504671 R COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon complement(1503808..1504671) Helicobacter pylori SouthAfrica7 12350964 YP_005772041.1 CDS HPSA_07425 NC_017361.1 1504649 1505302 R COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase complement(1504649..1505302) Helicobacter pylori SouthAfrica7 12350965 YP_005772042.1 CDS HPSA_07430 NC_017361.1 1505374 1506255 D COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase 1505374..1506255 Helicobacter pylori SouthAfrica7 12350966 YP_005772043.1 CDS HPSA_07435 NC_017361.1 1506245 1506448 D hypothetical protein 1506245..1506448 Helicobacter pylori SouthAfrica7 12350967 YP_005772044.1 CDS HPSA_07440 NC_017361.1 1506463 1507359 D COG0232 dGTP triphosphohydrolase; putative type II DNA methylase protein 1506463..1507359 Helicobacter pylori SouthAfrica7 12350968 YP_005772045.1 CDS HPSA_07445 NC_017361.1 1507352 1508083 D hypothetical protein 1507352..1508083 Helicobacter pylori SouthAfrica7 12350969 YP_005772046.1 CDS HPSA_07450 NC_017361.1 1508112 1508978 R COG1295 Predicted membrane protein; putative ribonuclease N complement(1508112..1508978) Helicobacter pylori SouthAfrica7 12350970 YP_005772047.1 CDS HPSA_07455 NC_017361.1 1508978 1509826 R COG0502 Biotin synthase and related enzymes; biotin synthase complement(1508978..1509826) Helicobacter pylori SouthAfrica7 12350971 YP_005772048.1 CDS HPSA_07460 NC_017361.1 1509795 1509962 R hypothetical protein complement(1509795..1509962) Helicobacter pylori SouthAfrica7 12350972 YP_005772049.1 CDS HPSA_07465 NC_017361.1 1510243 1512603 D COG3421 Uncharacterized protein conserved in bacteria; putative type III restriction enzyme R protein 1510243..1512603 Helicobacter pylori SouthAfrica7 12350973 YP_005772050.1 CDS HPSA_07470 NC_017361.1 1512597 1514465 D COG2189 Adenine specific DNA methylase Mod; putative type III restriction enzyme M protein 1512597..1514465 Helicobacter pylori SouthAfrica7 12350974 YP_005772051.1 CDS HPSA_07475 NC_017361.1 1514470 1515318 R COG1864 DNA/RNA endonuclease G, NUC1; putative endonuclease complement(1514470..1515318) Helicobacter pylori SouthAfrica7 12350975 YP_005772052.1 CDS HPSA_07480 NC_017361.1 1515475 1516302 R COG0287 Prephenate dehydrogenase; prephenate dehydrogenase complement(1515475..1516302) Helicobacter pylori SouthAfrica7 12350976 YP_005772053.1 CDS HPSA_07485 NC_017361.1 1516304 1518808 R COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent protease La complement(1516304..1518808) Helicobacter pylori SouthAfrica7 12350977 YP_005772054.1 CDS HPSA_07490 NC_017361.1 1518850 1519512 R COG4105 DNA uptake lipoprotein; competence lipoprotein ComL complement(1518850..1519512) Helicobacter pylori SouthAfrica7 12350978 YP_005772055.1 CDS HPSA_07495 NC_017361.1 1519569 1519715 R hypothetical protein complement(1519569..1519715) Helicobacter pylori SouthAfrica7 12350979 YP_005772056.1 CDS HPSA_07500 NC_017361.1 1519933 1520322 D COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1519933..1520322 Helicobacter pylori SouthAfrica7 12350980 YP_005772057.1 CDS fabZ NC_017361.1 1520498 1520977 D COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 1520498..1520977 Helicobacter pylori SouthAfrica7 12350981 YP_005772058.1 CDS HPSA_07510 NC_017361.1 1520980 1521792 D COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 1520980..1521792 Helicobacter pylori SouthAfrica7 12350982 YP_005772059.1 CDS clpX NC_017361.1 1521794 1523152 D COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX 1521794..1523152 Helicobacter pylori SouthAfrica7 12350983 YP_005772060.1 CDS HPSA_07520 NC_017361.1 1523195 1524238 D COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 1523195..1524238 Helicobacter pylori SouthAfrica7 12350984 YP_005772061.1 CDS HPSA_07525 NC_017361.1 1524242 1524994 D COG1792 Cell shape-determining protein; rod shape-determining protein MreC 1524242..1524994 Helicobacter pylori SouthAfrica7 12350985 YP_005772062.1 CDS HPSA_07540 NC_017361.1 1527440 1528219 D hypothetical protein 1527440..1528219 Helicobacter pylori SouthAfrica7 12350986 YP_005772063.1 CDS HPSA_07545 NC_017361.1 1528239 1528532 D hypothetical protein 1528239..1528532 Helicobacter pylori SouthAfrica7 12350987 YP_005772064.1 CDS HPSA_07550 NC_017361.1 1528539 1530065 D hypothetical protein 1528539..1530065 Helicobacter pylori SouthAfrica7 12350988 YP_005772065.1 CDS HPSA_07555 NC_017361.1 1530062 1530364 D hypothetical protein 1530062..1530364 Helicobacter pylori SouthAfrica7 12350989 YP_005772066.1 CDS HPSA_07560 NC_017361.1 1530365 1530631 D hypothetical protein 1530365..1530631 Helicobacter pylori SouthAfrica7 12350990 YP_005772067.1 CDS HPSA_07565 NC_017361.1 1530624 1533047 D COG3451 Type IV secretory pathway, VirB4 components; VirB4-like protein 1530624..1533047 Helicobacter pylori SouthAfrica7 12350991 YP_005772068.1 CDS HPSA_07570 NC_017361.1 1533050 1533940 D COG0550 Topoisomerase IA; DNA topoisomerase I (topA) 1533050..1533940 Helicobacter pylori SouthAfrica7 12350992 YP_005772069.1 CDS HPSA_07575 NC_017361.1 1533988 1534404 R COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 complement(1533988..1534404) Helicobacter pylori SouthAfrica7 12350993 YP_005772070.1 CDS HPSA_07580 NC_017361.1 1534441 1535769 D COG0675 Transposase and inactivated derivatives; IS606 transposase 1534441..1535769 Helicobacter pylori SouthAfrica7 12350994 YP_005772071.1 CDS HPSA_07585 NC_017361.1 1535817 1537052 D COG0550 Topoisomerase IA; DNA topoisomerase I (topA) 1535817..1537052 Helicobacter pylori SouthAfrica7 12350995 YP_005772072.1 CDS HPSA_07590 NC_017361.1 1537169 1538332 D COG3736 Type IV secretory pathway, component VirB8; VirB8 type IV secretion protein 1537169..1538332 Helicobacter pylori SouthAfrica7 12350996 YP_005772073.1 CDS HPSA_07595 NC_017361.1 1538332 1539864 D COG3504 Type IV secretory pathway, VirB9 components; VirB9 type IV secretion protein 1538332..1539864 Helicobacter pylori SouthAfrica7 12350997 YP_005772074.1 CDS HPSA_07600 NC_017361.1 1539861 1541123 D COG2948 Type IV secretory pathway, VirB10 components; VirB10 type IV secretion protein 1539861..1541123 Helicobacter pylori SouthAfrica7 12350998 YP_005772075.1 CDS HPSA_07605 NC_017361.1 1541193 1541486 D hypothetical protein 1541193..1541486 Helicobacter pylori SouthAfrica7 12350999 YP_005772076.1 CDS HPSA_07610 NC_017361.1 1541479 1541799 D COG0457 FOG: TPR repeat; hypothetical protein 1541479..1541799 Helicobacter pylori SouthAfrica7 12351000 YP_005772077.1 CDS HPSA_07615 NC_017361.1 1541802 1542104 D COG0612 Predicted Zn-dependent peptidases; hypothetical protein 1541802..1542104 Helicobacter pylori SouthAfrica7 12351001 YP_005772078.1 CDS HPSA_07620 NC_017361.1 1542101 1543072 D COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase (virB11-like) protein 1542101..1543072 Helicobacter pylori SouthAfrica7 12351002 YP_005772079.1 CDS HPSA_07625 NC_017361.1 1543069 1543542 D hypothetical protein 1543069..1543542 Helicobacter pylori SouthAfrica7 12351003 YP_005772080.1 CDS HPSA_07630 NC_017361.1 1543544 1543801 D hypothetical protein 1543544..1543801 Helicobacter pylori SouthAfrica7 12351004 YP_005772081.1 CDS HPSA_07635 NC_017361.1 1543901 1546033 D COG3505 Type IV secretory pathway, VirD4 components; conjugal transfer protein (traG) 1543901..1546033 Helicobacter pylori SouthAfrica7 12351005 YP_005772082.1 CDS HPSA_07640 NC_017361.1 1546254 1546550 R hypothetical protein complement(1546254..1546550) Helicobacter pylori SouthAfrica7 12351006 YP_005772083.1 CDS HPSA_07645 NC_017361.1 1546606 1546917 R hypothetical protein complement(1546606..1546917) Helicobacter pylori SouthAfrica7 12351007 YP_005772084.1 CDS HPSA_07650 NC_017361.1 1546885 1548873 D COG3843 Type IV secretory pathway, VirD2 components (relaxase); hypothetical protein 1546885..1548873 Helicobacter pylori SouthAfrica7 12351008 YP_005772085.1 CDS HPSA_07655 NC_017361.1 1548900 1549169 R hypothetical protein complement(1548900..1549169) Helicobacter pylori SouthAfrica7 12351009 YP_005772086.1 CDS HPSA_07660 NC_017361.1 1549247 1549909 R COG1192 ATPases involved in chromosome partitioning; PARA protein complement(1549247..1549909) Helicobacter pylori SouthAfrica7 12351010 YP_005772087.1 CDS HPSA_07665 NC_017361.1 1550176 1558584 R COG0827 Adenine-specific DNA methylase; hypothetical protein complement(1550176..1558584) Helicobacter pylori SouthAfrica7 12351011 YP_005772088.1 CDS HPSA_07670 NC_017361.1 1558781 1559788 D hypothetical protein 1558781..1559788 Helicobacter pylori SouthAfrica7 12351012 YP_005772089.1 CDS HPSA_07685 NC_017361.1 1561161 1563356 D hypothetical protein 1561161..1563356 Helicobacter pylori SouthAfrica7 12351013 YP_005772090.1 CDS HPSA_07690 NC_017361.1 1563366 1564766 D hypothetical protein 1563366..1564766 Helicobacter pylori SouthAfrica7 12351014 YP_005772091.1 CDS HPSA_07695 NC_017361.1 1564818 1565096 D hypothetical protein 1564818..1565096 Helicobacter pylori SouthAfrica7 12351015 YP_005772092.1 CDS HPSA_07700 NC_017361.1 1565098 1566360 D hypothetical protein 1565098..1566360 Helicobacter pylori SouthAfrica7 12351016 YP_005772093.1 CDS HPSA_07705 NC_017361.1 1566433 1567116 D hypothetical protein 1566433..1567116 Helicobacter pylori SouthAfrica7 12351017 YP_005772094.1 CDS HPSA_07710 NC_017361.1 1567195 1568187 R COG0582 Integrase; integrase/recombinase XercD family protein complement(1567195..1568187) Helicobacter pylori SouthAfrica7 12351018 YP_005772095.1 CDS HPSA_07715 NC_017361.1 1568573 1569259 R COG1061 DNA or RNA helicases of superfamily II; putative type III restriction enzyme R protein complement(1568573..1569259) Helicobacter pylori SouthAfrica7 12351019 YP_005772096.1 CDS HPSA_07720 NC_017361.1 1569269 1570351 R COG2189 Adenine specific DNA methylase Mod; modification methylase KpnI complement(1569269..1570351) Helicobacter pylori SouthAfrica7 12351020 YP_005772097.1 CDS HPSA_07725 NC_017361.1 1570323 1571738 R COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system: methylase complement(1570323..1571738) Helicobacter pylori SouthAfrica7 12351021 YP_005772098.1 CDS HPSA_07730 NC_017361.1 1571809 1572450 D COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; putative transcriptional regulator 1571809..1572450 Helicobacter pylori SouthAfrica7 12351022 YP_005772099.1 CDS HPSA_07735 NC_017361.1 1572500 1573618 D COG0642 Signal transduction histidine kinase; hypothetical protein 1572500..1573618 Helicobacter pylori SouthAfrica7 12351023 YP_005772100.1 CDS HPSA_07740 NC_017361.1 1573621 1575015 D COG0062 Uncharacterized conserved protein; hypothetical protein 1573621..1575015 Helicobacter pylori SouthAfrica7 12351024 YP_005772101.1 CDS HPSA_07745 NC_017361.1 1575027 1576487 D COG0305 Replicative DNA helicase; replicative DNA helicase 1575027..1576487 Helicobacter pylori SouthAfrica7 12351025 YP_005772102.1 CDS HPSA_07750 NC_017361.1 1576484 1577797 D COG0658 Predicted membrane metal-binding protein; DNA transfer protein ComE 1576484..1577797 Helicobacter pylori SouthAfrica7 12351026 YP_005772103.1 CDS ubiA NC_017361.1 1577826 1578710 D COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; prenyltransferase 1577826..1578710 Helicobacter pylori SouthAfrica7 12351027 YP_005772104.1 CDS HPSA_07760 NC_017361.1 1578703 1579197 D hypothetical protein 1578703..1579197 Helicobacter pylori SouthAfrica7 12351028 YP_005772105.1 CDS HPSA_07765 NC_017361.1 1579210 1579716 D hypothetical protein 1579210..1579716 Helicobacter pylori SouthAfrica7 12351029 YP_005772106.1 CDS HPSA_07770 NC_017361.1 1579710 1580513 D COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 1579710..1580513 Helicobacter pylori SouthAfrica7 12351030 YP_005772107.1 CDS HPSA_07775 NC_017361.1 1580503 1581513 D COG0379 Quinolinate synthase; quinolinate synthetase 1580503..1581513 Helicobacter pylori SouthAfrica7 12351031 YP_005772108.1 CDS HPSA_07780 NC_017361.1 1581513 1582334 D COG0157 Nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase 1581513..1582334 Helicobacter pylori SouthAfrica7 12351032 YP_005772109.1 CDS HPSA_07785 NC_017361.1 1582360 1584798 D COG0286 Type I restriction-modification system methyltransferase subunit; putative adenine specific DNA methyltransferase protein 1 1582360..1584798 Helicobacter pylori SouthAfrica7 12351033 YP_005772110.1 CDS HPSA_07790 NC_017361.1 1585032 1585736 D COG4889 Predicted helicase; adenine specific DNA methyltransferase 1585032..1585736 Helicobacter pylori SouthAfrica7 12351034 YP_005772111.1 CDS HPSA_07805 NC_017361.1 1586438 1586611 D hypothetical protein 1586438..1586611 Helicobacter pylori SouthAfrica7 12351035 YP_005772112.1 CDS HPSA_07810 NC_017361.1 1587390 1587797 D hypothetical protein 1587390..1587797 Helicobacter pylori SouthAfrica7 12351036 YP_005772113.1 CDS HPSA_07815 NC_017361.1 1588018 1589397 D COG0793 Periplasmic protease; carboxyl-terminal protease 1588018..1589397 Helicobacter pylori SouthAfrica7 12351037 YP_005772114.1 CDS HPSA_07820 NC_017361.1 1589404 1590579 D hypothetical protein 1589404..1590579 Helicobacter pylori SouthAfrica7 12351038 YP_005772115.1 CDS HPSA_07825 NC_017361.1 1590566 1591279 D COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1590566..1591279 Helicobacter pylori SouthAfrica7 12351039 YP_005772116.1 CDS HPSA_07830 NC_017361.1 1591276 1591977 D COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 1591276..1591977 Helicobacter pylori SouthAfrica7 12351040 YP_005772117.1 CDS HPSA_07835 NC_017361.1 1592063 1593055 D COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1592063..1593055 Helicobacter pylori SouthAfrica7 12351041 YP_005772118.1 CDS pgk NC_017361.1 1593071 1594279 D COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase 1593071..1594279 Helicobacter pylori SouthAfrica7 12351042 YP_005772119.1 CDS HPSA_07845 NC_017361.1 1594295 1595251 D COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein 1594295..1595251 Helicobacter pylori SouthAfrica7 12351043 YP_005772120.1 CDS HPSA_07850 NC_017361.1 1595258 1595986 D COG0861 Membrane protein TerC, possibly involved in tellurium resistance; integral membrane protein 1595258..1595986 Helicobacter pylori SouthAfrica7 12351044 YP_005772121.1 CDS HPSA_07855 NC_017361.1 1596357 1596452 D hypothetical protein 1596357..1596452 Helicobacter pylori SouthAfrica7 12351045 YP_005772122.1 CDS HPSA_07860 NC_017361.1 1596445 1597155 R COG0270 Site-specific DNA methylase; site-specific DNA-methyltransferase complement(1596445..1597155) Helicobacter pylori SouthAfrica7 12351046 YP_005772123.1 CDS HPSA_07865 NC_017361.1 1597202 1597702 R COG0270 Site-specific DNA methylase; site-specific DNA-methyltransferase complement(1597202..1597702) Helicobacter pylori SouthAfrica7 12351047 YP_005772124.1 CDS tsf NC_017361.1 1598837 1599904 R COG0264 Translation elongation factor Ts; elongation factor Ts complement(1598837..1599904) Helicobacter pylori SouthAfrica7 12351048 YP_005772125.1 CDS rpsB NC_017361.1 1599904 1600698 R COG0052 Ribosomal protein S2; 30S ribosomal protein S2 complement(1599904..1600698) Helicobacter pylori SouthAfrica7 12351049 YP_005772126.1 CDS HPSA_07890 NC_017361.1 1600941 1603790 D COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); putative recombination protein RecB 1600941..1603790 Helicobacter pylori SouthAfrica7 12351050 YP_005772127.1 CDS HPSA_07895 NC_017361.1 1603815 1605131 D COG3004 Na+/H+ antiporter; Na(+)/H(+) antiporter NhaA 1603815..1605131 Helicobacter pylori SouthAfrica7 12351051 YP_005772128.1 CDS yajC NC_017361.1 1605179 1605472 D COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 1605179..1605472 Helicobacter pylori SouthAfrica7 12351052 YP_005772129.1 CDS secD NC_017361.1 1605473 1607053 D COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 1605473..1607053 Helicobacter pylori SouthAfrica7 12351053 YP_005772130.1 CDS secF NC_017361.1 1607062 1608033 D COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 1607062..1608033 Helicobacter pylori SouthAfrica7 12351054 YP_005772131.1 CDS HPSA_07915 NC_017361.1 1608043 1608381 D hypothetical protein 1608043..1608381 Helicobacter pylori SouthAfrica7 12351055 YP_005772132.1 CDS leuS NC_017361.1 1608391 1610811 D COG0495 Leucyl-tRNA synthetase; leucyl-tRNA synthetase 1608391..1610811 Helicobacter pylori SouthAfrica7 12351056 YP_005772133.1 CDS HPSA_07925 NC_017361.1 1610808 1611326 D hypothetical protein 1610808..1611326 Helicobacter pylori SouthAfrica7 12351057 YP_005772134.1 CDS HPSA_07930 NC_017361.1 1611316 1612491 D COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase / dihydrofolate synthase 1611316..1612491 Helicobacter pylori SouthAfrica7 12351058 YP_005772135.1 CDS HPSA_07935 NC_017361.1 1612491 1613417 D COG0739 Membrane proteins related to metalloendopeptidases; toxR-activated protein 1612491..1613417 Helicobacter pylori SouthAfrica7 12351059 YP_005772136.1 CDS HPSA_07940 NC_017361.1 1613426 1614361 D COG0739 Membrane proteins related to metalloendopeptidases; toxR-activated protein (tagE) 1613426..1614361 Helicobacter pylori SouthAfrica7 12351060 YP_005772137.1 CDS HPSA_07945 NC_017361.1 1614280 1614690 D COG1664 Integral membrane protein CcmA involved in cell shape determination; hypothetical protein 1614280..1614690 Helicobacter pylori SouthAfrica7 12351061 YP_005772138.1 CDS HPSA_07950 NC_017361.1 1614694 1617693 D COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 1614694..1617693 Helicobacter pylori SouthAfrica7 12351062 YP_005772139.1 CDS HPSA_07955 NC_017361.1 1617820 1618323 D COG0723 Rieske Fe-S protein; ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) 1617820..1618323 Helicobacter pylori SouthAfrica7 12351063 YP_005772140.1 CDS HPSA_07960 NC_017361.1 1618335 1619573 D COG1290 Cytochrome b subunit of the bc complex; ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (fbcH) 1618335..1619573 Helicobacter pylori SouthAfrica7 12351064 YP_005772141.1 CDS HPSA_07965 NC_017361.1 1619570 1620427 D COG2857 Cytochrome c1; ubiquinol-cytochrome c reductase cytochrome c1 subunit 1619570..1620427 Helicobacter pylori SouthAfrica7 12351065 YP_005772142.1 CDS HPSA_07970 NC_017361.1 1620642 1621751 D COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 1620642..1621751 Helicobacter pylori SouthAfrica7 12351066 YP_005772143.1 CDS HPSA_07975 NC_017361.1 1621714 1622316 D COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative metal-dependent hydrolase protein 2 1621714..1622316 Helicobacter pylori SouthAfrica7 12351067 YP_005772144.1 CDS HPSA_07980 NC_017361.1 1622324 1623007 R hypothetical protein complement(1622324..1623007) Helicobacter pylori SouthAfrica7 12351068 YP_005772145.1 CDS HPSA_07985 NC_017361.1 1623007 1624098 R COG1106 Predicted ATPases; hypothetical protein complement(1623007..1624098) Helicobacter pylori SouthAfrica7 12351069 YP_005772146.1 CDS HPSA_07990 NC_017361.1 1624185 1626032 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; cell division protein FtsI complement(1624185..1626032) Helicobacter pylori SouthAfrica7 12351070 YP_005772147.1 CDS fliE NC_017361.1 1626184 1626513 R COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE complement(1626184..1626513) Helicobacter pylori SouthAfrica7 12351071 YP_005772148.1 CDS flgC NC_017361.1 1626641 1627126 R COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC complement(1626641..1627126) Helicobacter pylori SouthAfrica7 12351072 YP_005772149.1 CDS flgB NC_017361.1 1627140 1627562 R COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB complement(1627140..1627562) Helicobacter pylori SouthAfrica7 12351073 YP_005772150.1 CDS HPSA_08010 NC_017361.1 1627750 1628916 D COG0772 Bacterial cell division membrane protein; cell division protein ftsW 1627750..1628916 Helicobacter pylori SouthAfrica7 12351074 YP_005772151.1 CDS HPSA_08015 NC_017361.1 1628941 1629948 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron(III) ABC transporter, periplasmic iron-binding protein (ceuE) complement(1628941..1629948) Helicobacter pylori SouthAfrica7 12351075 YP_005772152.1 CDS HPSA_08020 NC_017361.1 1630130 1631131 R COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; hypothetical protein complement(1630130..1631131) Helicobacter pylori SouthAfrica7 12351076 YP_005772153.1 CDS HPSA_08025 NC_017361.1 1631379 1631975 D COG0450 Peroxiredoxin; alkyl hydroperoxide reductase 1631379..1631975 Helicobacter pylori SouthAfrica7 12351077 YP_005772154.1 CDS HPSA_08030 NC_017361.1 1632119 1632925 D COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; putative Outer membrane protein 1632119..1632925 Helicobacter pylori SouthAfrica7 12351078 YP_005772155.1 CDS HPSA_08035 NC_017361.1 1633104 1633205 D hypothetical protein 1633104..1633205 Helicobacter pylori SouthAfrica7 12351079 YP_005772156.1 CDS HPSA_08040 NC_017361.1 1633582 1635348 R COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 complement(1633582..1635348) Helicobacter pylori SouthAfrica7 12351080 YP_005772157.1 CDS HPSA_08045 NC_017361.1 1635329 1635772 R hypothetical protein complement(1635329..1635772) Helicobacter pylori SouthAfrica7 12351081 YP_005772158.1 CDS engB NC_017361.1 1635778 1636404 R COG0218 Predicted GTPase; ribosome biogenesis GTP-binding protein YsxC complement(1635778..1636404) Helicobacter pylori SouthAfrica7 12351082 YP_005772159.1 CDS HPSA_08055 NC_017361.1 1636401 1636958 R COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1636401..1636958) Helicobacter pylori SouthAfrica7 12351083 YP_005772160.1 CDS HPSA_08060 NC_017361.1 1636958 1637551 R hypothetical protein complement(1636958..1637551) Helicobacter pylori SouthAfrica7 12351084 YP_005772161.1 CDS HPSA_08065 NC_017361.1 1637526 1638020 R COG1778 Low specificity phosphatase (HAD superfamily); hypothetical protein complement(1637526..1638020) Helicobacter pylori SouthAfrica7 12351085 YP_005772162.1 CDS HPSA_08070 NC_017361.1 1638017 1638964 R COG0797 Lipoproteins; rare lipoprotein A complement(1638017..1638964) Helicobacter pylori SouthAfrica7 12351086 YP_005772163.1 CDS HPSA_08075 NC_017361.1 1638964 1640076 R COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D complement(1638964..1640076) Helicobacter pylori SouthAfrica7 12351087 YP_005772164.1 CDS HPSA_08080 NC_017361.1 1640178 1640942 R COG0084 Mg-dependent DNase; Deoxyribonuclease complement(1640178..1640942) Helicobacter pylori SouthAfrica7 12351088 YP_005772165.1 CDS HPSA_08085 NC_017361.1 1641015 1641635 D COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 1641015..1641635 Helicobacter pylori SouthAfrica7 12351089 YP_005772166.1 CDS HPSA_08090 NC_017361.1 1641636 1641908 D COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; FlhB-related flagellar biosynthesis protein 1641636..1641908 Helicobacter pylori SouthAfrica7 12351090 YP_005772167.1 CDS HPSA_08095 NC_017361.1 1641923 1642906 D COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit 1641923..1642906 Helicobacter pylori SouthAfrica7 12351091 YP_005772168.1 CDS HPSA_08100 NC_017361.1 1642908 1643555 D COG2011 ABC-type metal ion transport system, permease component; ABC transporter permease 1642908..1643555 Helicobacter pylori SouthAfrica7 12351092 YP_005772169.1 CDS HPSA_08105 NC_017361.1 1643738 1644172 R hypothetical protein complement(1643738..1644172) Helicobacter pylori SouthAfrica7 12351093 YP_005772170.1 CDS HPSA_08110 NC_017361.1 1644182 1644778 R COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein complement(1644182..1644778) Helicobacter pylori SouthAfrica7 12351094 YP_005772171.1 CDS HPSA_08115 NC_017361.1 1644775 1645785 R COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl phosphate N-acetylglucosaminyltransferase complement(1644775..1645785) Helicobacter pylori SouthAfrica7 12351095 YP_005772172.1 CDS HPSA_08120 NC_017361.1 1645919 1646707 D COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase 1645919..1646707 Helicobacter pylori SouthAfrica7 12351096 YP_005772173.1 CDS pdxA NC_017361.1 1646709 1647632 D COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 1646709..1647632 Helicobacter pylori SouthAfrica7 12351097 YP_005772174.1 CDS HPSA_08130 NC_017361.1 1647793 1648821 D COG0533 Metal-dependent proteases with possible chaperone activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1647793..1648821 Helicobacter pylori SouthAfrica7 12351098 YP_005772175.1 CDS flgG NC_017361.1 1649805 1650593 D COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 1649805..1650593 Helicobacter pylori SouthAfrica7 12351099 YP_005772176.1 CDS HPSA_08140 NC_017361.1 1650616 1651602 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1650616..1651602) Helicobacter pylori SouthAfrica7 12351100 YP_005772177.1 CDS HPSA_08145 NC_017361.1 1652025 1652165 R hypothetical protein complement(1652025..1652165) Helicobacter pylori SouthAfrica7 12351101 YP_005772178.1 CDS HPSA_08150 NC_017361.1 1652250 1653011 R COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein complement(1652250..1653011) Helicobacter pylori SouthAfrica7 12351102 YP_005772179.1 CDS HPSA_08155 NC_017361.1 1653205 1653513 R hypothetical protein complement(1653205..1653513) Helicobacter pylori SouthAfrica7 12351103 YP_005772180.1 CDS HPSA_08160 NC_017361.1 1653567 1653752 R hypothetical protein complement(1653567..1653752) Helicobacter pylori SouthAfrica7 12351104 YP_005782946.1 CDS HPSA_08249 NC_017373.1 91 1698 D COG5527 Protein involved in initiation of plasmid replication; hypothetical protein 91..1698 Helicobacter pylori SouthAfrica7 12363123 YP_005782947.1 CDS HPSA_08254 NC_017373.1 1866 2282 R COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 complement(1866..2282) Helicobacter pylori SouthAfrica7 12363124 YP_005782948.1 CDS HPSA_08259 NC_017373.1 2319 3647 D COG0675 Transposase and inactivated derivatives; IS606 transposase 2319..3647 Helicobacter pylori SouthAfrica7 12363125 YP_005782949.1 CDS HPSA_08264 NC_017373.1 3800 4300 D hypothetical protein 3800..4300 Helicobacter pylori SouthAfrica7 12363126 YP_005782950.1 CDS HPSA_08269 NC_017373.1 4300 4632 D hypothetical protein 4300..4632 Helicobacter pylori SouthAfrica7 12363127 YP_005782951.1 CDS HPSA_08274 NC_017373.1 4636 5409 D COG3177 Uncharacterized conserved protein; hypothetical protein 4636..5409 Helicobacter pylori SouthAfrica7 12363128 YP_005782952.1 CDS HPSA_08279 NC_017373.1 5455 6165 D COG3177 Uncharacterized conserved protein; hypothetical protein 5455..6165 Helicobacter pylori SouthAfrica7 12363129 YP_005782953.1 CDS HPSA_08284 NC_017373.1 6290 7453 R COG0477 Permeases of the major facilitator superfamily; MccC-like protein complement(6290..7453) Helicobacter pylori SouthAfrica7 12363130 YP_005782954.1 CDS HPSA_08289 NC_017373.1 7652 8980 R COG0675 Transposase and inactivated derivatives; IS606 transposase complement(7652..8980) Helicobacter pylori SouthAfrica7 12363131 YP_005782955.1 CDS HPSA_08294 NC_017373.1 9017 9433 D COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 9017..9433 Helicobacter pylori SouthAfrica7 12363132 YP_005782956.1 CDS HPSA_08299 NC_017373.1 9770 9961 D hypothetical protein 9770..9961 Helicobacter pylori SouthAfrica7 12363133 YP_005782957.1 CDS HPSA_08304 NC_017373.1 9962 10876 D hypothetical protein 9962..10876 Helicobacter pylori SouthAfrica7 12363105 YP_005782958.1 CDS HPSA_08309 NC_017373.1 10876 12198 D COG1944 Uncharacterized conserved protein; hypothetical protein 10876..12198 Helicobacter pylori SouthAfrica7 12363106 YP_005782959.1 CDS HPSA_08314 NC_017373.1 12210 13031 D COG0778 Nitroreductase; hypothetical protein 12210..13031 Helicobacter pylori SouthAfrica7 12363107 YP_005782960.1 CDS HPSA_08319 NC_017373.1 13015 14157 D hypothetical protein 13015..14157 Helicobacter pylori SouthAfrica7 12363108 YP_005782961.1 CDS HPSA_08324 NC_017373.1 14147 14848 D COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 14147..14848 Helicobacter pylori SouthAfrica7 12363109 YP_005782962.1 CDS HPSA_08329 NC_017373.1 14848 15603 D COG0842 ABC-type multidrug transport system, permease component; multidrug ABC transporter permease 14848..15603 Helicobacter pylori SouthAfrica7 12363110 YP_005782963.1 CDS HPSA_08334 NC_017373.1 15608 17023 R F4; hypothetical protein complement(15608..17023) Helicobacter pylori SouthAfrica7 12363111 YP_005782964.1 CDS HPSA_08339 NC_017373.1 17330 18049 D hypothetical protein 17330..18049 Helicobacter pylori SouthAfrica7 12363112 YP_005782965.1 CDS HPSA_08344 NC_017373.1 18142 19470 R COG0675 Transposase and inactivated derivatives; IS606 transposase complement(18142..19470) Helicobacter pylori SouthAfrica7 12363113 YP_005782966.1 CDS HPSA_08349 NC_017373.1 19507 19923 D COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 19507..19923 Helicobacter pylori SouthAfrica7 12363114 YP_005782967.1 CDS HPSA_08354 NC_017373.1 20077 22059 R MobA-like protein complement(20077..22059) Helicobacter pylori SouthAfrica7 12363115 YP_005782968.1 CDS HPSA_08359 NC_017373.1 22049 22384 R F5; hypothetical protein complement(22049..22384) Helicobacter pylori SouthAfrica7 12363116 YP_005782969.1 CDS HPSA_08364 NC_017373.1 22556 22837 D hypothetical protein 22556..22837 Helicobacter pylori SouthAfrica7 12363117 YP_005782970.1 CDS HPSA_08369 NC_017373.1 22846 23115 D COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein 22846..23115 Helicobacter pylori SouthAfrica7 12363118 YP_005782971.1 CDS HPSA_08374 NC_017373.1 23462 24043 R COG1432 Uncharacterized conserved protein; hypothetical protein complement(23462..24043) Helicobacter pylori SouthAfrica7 12363119 YP_005782972.1 CDS HPSA_08379 NC_017373.1 24415 24603 D hypothetical protein 24415..24603 Helicobacter pylori SouthAfrica7 12363120 YP_005782973.1 CDS HPSA_08384 NC_017373.1 24606 25025 D hypothetical protein 24606..25025 Helicobacter pylori SouthAfrica7 12363121 YP_005782974.1 CDS HPSA_08389 NC_017373.1 25167 25442 D hypothetical protein 25167..25442 Helicobacter pylori SouthAfrica7 12363122 HPSA_t08167 tRNA HPSA_t08167 NC_017361.1 4039 4114 R tRNA-Glu complement(4039..4114) Helicobacter pylori SouthAfrica7 12350827 HPSA_t08169 tRNA HPSA_t08169 NC_017361.1 4174 4250 R tRNA-Asp complement(4174..4250) Helicobacter pylori SouthAfrica7 12350829 HPSA_t08171 tRNA HPSA_t08171 NC_017361.1 4301 4376 R tRNA-Val complement(4301..4376) Helicobacter pylori SouthAfrica7 12350855 HPSA_t08173 tRNA HPSA_t08173 NC_017361.1 4419 4493 R tRNA-Glu complement(4419..4493) Helicobacter pylori SouthAfrica7 12350168 HPSA_t08175 tRNA HPSA_t08175 NC_017361.1 4506 4581 R tRNA-Lys complement(4506..4581) Helicobacter pylori SouthAfrica7 12350169 HPSA_t08177 tRNA HPSA_t08177 NC_017361.1 76097 76172 R tRNA-Val complement(76097..76172) Helicobacter pylori SouthAfrica7 12350235 HPSA_t08179 tRNA HPSA_t08179 NC_017361.1 95049 95140 D tRNA-Ser 95049..95140 Helicobacter pylori SouthAfrica7 12350253 HPSA_t08181 tRNA HPSA_t08181 NC_017361.1 233301 233375 R tRNA-Asn complement(233301..233375) Helicobacter pylori SouthAfrica7 12350391 HPSA_t08183 tRNA HPSA_t08183 NC_017361.1 256483 256558 R tRNA-Ala complement(256483..256558) Helicobacter pylori SouthAfrica7 12350416 HPSA_t08185 tRNA HPSA_t08185 NC_017361.1 340779 340855 D tRNA-Arg 340779..340855 Helicobacter pylori SouthAfrica7 12350495 HPSA_t08187 tRNA HPSA_t08187 NC_017361.1 392806 392893 R tRNA-Ser complement(392806..392893) Helicobacter pylori SouthAfrica7 12350543 HPSA_t08189 tRNA HPSA_t08189 NC_017361.1 443908 443985 R tRNA-Pro complement(443908..443985) Helicobacter pylori SouthAfrica7 12350597 HPSA_t08191 tRNA HPSA_t08191 NC_017361.1 728773 728849 R tRNA-Met complement(728773..728849) Helicobacter pylori SouthAfrica7 12349628 HPSA_t08193 tRNA HPSA_t08193 NC_017361.1 820354 820430 D tRNA-Arg 820354..820430 Helicobacter pylori SouthAfrica7 12349723 HPSA_t08195 tRNA HPSA_t08195 NC_017361.1 876314 876390 R tRNA-Met complement(876314..876390) Helicobacter pylori SouthAfrica7 12349776 HPSA_t08197 tRNA HPSA_t08197 NC_017361.1 876414 876488 R tRNA-Gln complement(876414..876488) Helicobacter pylori SouthAfrica7 12349777 HPSA_t08199 tRNA HPSA_t08199 NC_017361.1 931160 931234 D tRNA-Gly 931160..931234 Helicobacter pylori SouthAfrica7 12349821 HPSA_t08201 tRNA HPSA_t08201 NC_017361.1 931632 931718 D tRNA-Leu 931632..931718 Helicobacter pylori SouthAfrica7 12349823 HPSA_t08203 tRNA HPSA_t08203 NC_017361.1 931767 931841 D tRNA-Cys 931767..931841 Helicobacter pylori SouthAfrica7 12349824 HPSA_t08205 tRNA HPSA_t08205 NC_017361.1 931889 931976 D tRNA-Ser 931889..931976 Helicobacter pylori SouthAfrica7 12349825 HPSA_t08207 tRNA HPSA_t08207 NC_017361.1 1033541 1033617 R tRNA-Arg complement(1033541..1033617) Helicobacter pylori SouthAfrica7 12349912 HPSA_t08209 tRNA HPSA_t08209 NC_017361.1 1033635 1033711 R tRNA-Arg complement(1033635..1033711) Helicobacter pylori SouthAfrica7 12349913 HPSA_t08211 tRNA HPSA_t08211 NC_017361.1 1033771 1033847 R tRNA-His complement(1033771..1033847) Helicobacter pylori SouthAfrica7 12349914 HPSA_t08213 tRNA HPSA_t08213 NC_017361.1 1033910 1033987 R tRNA-Pro complement(1033910..1033987) Helicobacter pylori SouthAfrica7 12349915 HPSA_t08215 tRNA HPSA_t08215 NC_017361.1 1084196 1084280 R tRNA-Leu complement(1084196..1084280) Helicobacter pylori SouthAfrica7 12349964 HPSA_t08217 tRNA HPSA_t08217 NC_017361.1 1089066 1089142 D tRNA-Ile 1089066..1089142 Helicobacter pylori SouthAfrica7 12349970 HPSA_t08219 tRNA HPSA_t08219 NC_017361.1 1089159 1089234 D tRNA-Ala 1089159..1089234 Helicobacter pylori SouthAfrica7 12349971 HPSA_t08221 tRNA HPSA_t08221 NC_017361.1 1188683 1188760 R tRNA-Met complement(1188683..1188760) Helicobacter pylori SouthAfrica7 12350066 HPSA_t08223 tRNA HPSA_t08223 NC_017361.1 1219261 1219336 R tRNA-Trp complement(1219261..1219336) Helicobacter pylori SouthAfrica7 12350091 HPSA_t08225 tRNA HPSA_t08225 NC_017361.1 1220918 1220992 R tRNA-Thr complement(1220918..1220992) Helicobacter pylori SouthAfrica7 12350094 HPSA_t08227 tRNA HPSA_t08227 NC_017361.1 1221023 1221099 R tRNA-Gly complement(1221023..1221099) Helicobacter pylori SouthAfrica7 12350095 HPSA_t08229 tRNA HPSA_t08229 NC_017361.1 1221116 1221200 R tRNA-Tyr complement(1221116..1221200) Helicobacter pylori SouthAfrica7 12350096 HPSA_t08231 tRNA HPSA_t08231 NC_017361.1 1221228 1221303 R tRNA-Thr complement(1221228..1221303) Helicobacter pylori SouthAfrica7 12350097 HPSA_t08233 tRNA HPSA_t08233 NC_017361.1 1224095 1224181 R tRNA-Leu complement(1224095..1224181) Helicobacter pylori SouthAfrica7 12350100 HPSA_t08235 tRNA HPSA_t08235 NC_017361.1 1224230 1224316 R tRNA-Leu complement(1224230..1224316) Helicobacter pylori SouthAfrica7 12350101 HPSA_t08237 tRNA HPSA_t08237 NC_017361.1 1472691 1472766 D tRNA-Phe 1472691..1472766 Helicobacter pylori SouthAfrica7 12350938 HPSA_r08239 rRNA HPSA_r08239 NC_017361.1 1014021 1014138 R 5S ribosomal RNA complement(1014021..1014138) Helicobacter pylori SouthAfrica7 12349895 HPSA_r08247 rRNA HPSA_r08247 NC_017361.1 1014372 1017249 R 23S ribosomal RNA complement(1014372..1017249) Helicobacter pylori SouthAfrica7 12349896 HPSA_r08243 rRNA HPSA_r08243 NC_017361.1 1144216 1145722 R 16S ribosomal RNA complement(1144216..1145722) Helicobacter pylori SouthAfrica7 12350025 HPSA_r08241 rRNA HPSA_r08241 NC_017361.1 1343440 1343557 R 5S ribosomal RNA complement(1343440..1343557) Helicobacter pylori SouthAfrica7 12350818 HPSA_r08249 rRNA HPSA_r08249 NC_017361.1 1343791 1346668 R 23S ribosomal RNA complement(1343791..1346668) Helicobacter pylori SouthAfrica7 12350819 HPSA_r08245 rRNA HPSA_r08245 NC_017361.1 1375562 1377068 R 16S ribosomal RNA complement(1375562..1377068) Helicobacter pylori SouthAfrica7 12350846