-- dump date 20140619_114345 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_005770638.1 385221505 12350103 complement(11..427) 1 NC_017361.1 COG0781 Transcription termination factor; transcription antitermination protein NusB 427 nusB 12350103 nusB Helicobacter pylori SouthAfrica7 transcription antitermination protein NusB YP_005770638.1 11 R 907239 CDS YP_005770639.1 385221506 12350105 complement(429..899) 1 NC_017361.1 COG0054 Riboflavin synthase beta-chain; 6,7-dimethyl-8-ribityllumazine synthase 899 ribH 12350105 ribH Helicobacter pylori SouthAfrica7 6,7-dimethyl-8-ribityllumazine synthase YP_005770639.1 429 R 907239 CDS YP_005770640.1 385221507 12350107 complement(909..1739) 1 NC_017361.1 COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; 2-dehydro-3-deoxyphosphooctonate aldolase 1739 12350107 HPSA_00015 Helicobacter pylori SouthAfrica7 2-dehydro-3-deoxyphosphooctonate aldolase YP_005770640.1 909 R 907239 CDS YP_005770641.1 385221508 12350109 complement(1726..2391) 1 NC_017361.1 COG0288 Carbonic anhydrase; carbonic anhydrase 2391 12350109 HPSA_00020 Helicobacter pylori SouthAfrica7 carbonic anhydrase YP_005770641.1 1726 R 907239 CDS YP_005770642.1 385221509 12350113 2512..3195 1 NC_017361.1 COG0284 Orotidine-5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 3195 12350113 HPSA_00025 Helicobacter pylori SouthAfrica7 orotidine 5'-phosphate decarboxylase YP_005770642.1 2512 D 907239 CDS YP_005770643.1 385221510 12350115 3195..4025 1 NC_017361.1 COG0414 Panthothenate synthetase; pantoate--beta-alanine ligase 4025 panC 12350115 panC Helicobacter pylori SouthAfrica7 pantoate--beta-alanine ligase YP_005770643.1 3195 D 907239 CDS YP_005770644.1 385221511 12350170 complement(5288..7282) 1 NC_017361.1 outer membrane protein HopZ 7282 12350170 HPSA_00035 Helicobacter pylori SouthAfrica7 outer membrane protein HopZ YP_005770644.1 5288 R 907239 CDS YP_005770645.1 385221512 12350171 7649..7741 1 NC_017361.1 hypothetical protein 7741 12350171 HPSA_00040 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770645.1 7649 D 907239 CDS YP_005770646.1 385221513 12350172 complement(7760..9400) 1 NC_017361.1 COG0459 Chaperonin GroEL (HSP60 family); chaperonin GroEL 9400 groEL 12350172 groEL Helicobacter pylori SouthAfrica7 chaperonin GroEL YP_005770646.1 7760 R 907239 CDS YP_005770647.1 385221514 12350173 complement(9425..9781) 1 NC_017361.1 COG0234 Co-chaperonin GroES (HSP10); co-chaperonin GroES 9781 groES 12350173 groES Helicobacter pylori SouthAfrica7 co-chaperonin GroES YP_005770647.1 9425 R 907239 CDS YP_005770648.1 385221515 12350174 10072..11751 1 NC_017361.1 COG0358 DNA primase (bacterial type); DNA primase 11751 dnaG 12350174 dnaG Helicobacter pylori SouthAfrica7 DNA primase YP_005770648.1 10072 D 907239 CDS YP_005770649.1 385221516 12350175 11748..12800 1 NC_017361.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA methyltransferase 12800 12350175 HPSA_00060 Helicobacter pylori SouthAfrica7 tRNA methyltransferase YP_005770649.1 11748 D 907239 CDS YP_005770650.1 385221517 12350176 12892..13719 1 NC_017361.1 hypothetical protein 13719 12350176 HPSA_00065 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770650.1 12892 D 907239 CDS YP_005770651.1 385221518 12350177 13865..14146 1 NC_017361.1 ComB2 competence protein 14146 12350177 HPSA_00070 Helicobacter pylori SouthAfrica7 ComB2 competence protein YP_005770651.1 13865 D 907239 CDS YP_005770652.1 385221519 12350178 14146..14409 1 NC_017361.1 ComB3 competence protein 14409 12350178 HPSA_00075 Helicobacter pylori SouthAfrica7 ComB3 competence protein YP_005770652.1 14146 D 907239 CDS YP_005770653.1 385221520 12350179 14411..16774 1 NC_017361.1 COG3451 Type IV secretory pathway, VirB4 components; DNA transfer protein 16774 12350179 HPSA_00080 Helicobacter pylori SouthAfrica7 DNA transfer protein YP_005770653.1 14411 D 907239 CDS YP_005770654.1 385221521 12350180 17075..18415 1 NC_017361.1 COG3014 Uncharacterized protein conserved in bacteria; hypothetical protein 18415 12350180 HPSA_00085 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770654.1 17075 D 907239 CDS YP_005770655.1 385221522 12350181 18510..19475 1 NC_017361.1 COG0835 Chemotaxis signal transduction protein; chemotaxis protein 19475 12350181 HPSA_00090 Helicobacter pylori SouthAfrica7 chemotaxis protein YP_005770655.1 18510 D 907239 CDS YP_005770656.1 385221523 12350182 19472..20689 1 NC_017361.1 COG0019 Diaminopimelate decarboxylase; carboxynorspermidine decarboxylase 20689 12350182 HPSA_00095 Helicobacter pylori SouthAfrica7 carboxynorspermidine decarboxylase YP_005770656.1 19472 D 907239 CDS YP_005770657.1 385221524 12350183 complement(20731..21303) 1 NC_017361.1 COG0671 Membrane-associated phospholipid phosphatase; lipid A 1-phosphatase 21303 12350183 HPSA_00100 Helicobacter pylori SouthAfrica7 lipid A 1-phosphatase YP_005770657.1 20731 R 907239 CDS YP_005770658.1 385221525 12350184 complement(21314..22885) 1 NC_017361.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; lipid A phosphoethanolamine transferase 22885 12350184 HPSA_00105 Helicobacter pylori SouthAfrica7 lipid A phosphoethanolamine transferase YP_005770658.1 21314 R 907239 CDS YP_005770659.1 385221526 12350185 complement(23931..24044) 1 NC_017361.1 hypothetical protein 24044 12350185 HPSA_00110 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770659.1 23931 R 907239 CDS YP_005770660.1 385221527 12350186 complement(24054..26165) 1 NC_017361.1 hypothetical protein 26165 12350186 HPSA_00115 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770660.1 24054 R 907239 CDS YP_005770661.1 385221528 12350187 complement(26631..27911) 1 NC_017361.1 COG0372 Citrate synthase; type II citrate synthase 27911 gltA 12350187 gltA Helicobacter pylori SouthAfrica7 type II citrate synthase YP_005770661.1 26631 R 907239 CDS YP_005770662.1 385221529 12350188 28111..29388 1 NC_017361.1 COG0538 Isocitrate dehydrogenases; isocitrate dehydrogenase 29388 12350188 HPSA_00125 Helicobacter pylori SouthAfrica7 isocitrate dehydrogenase YP_005770662.1 28111 D 907239 CDS YP_005770663.1 385221530 12350189 29456..29980 1 NC_017361.1 hypothetical protein 29980 12350189 HPSA_00130 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770663.1 29456 D 907239 CDS YP_005770664.1 385221531 12350190 complement(29957..30613) 1 NC_017361.1 COG0132 Dethiobiotin synthetase; dethiobiotin synthetase 30613 12350190 HPSA_00135 Helicobacter pylori SouthAfrica7 dethiobiotin synthetase YP_005770664.1 29957 R 907239 CDS YP_005770665.1 385221532 12350191 complement(30617..32344) 1 NC_017361.1 COG0515 Serine/threonine protein kinase; hypothetical protein 32344 12350191 HPSA_00140 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770665.1 30617 R 907239 CDS YP_005770666.1 385221533 12350192 32468..32881 1 NC_017361.1 COG0589 Universal stress protein UspA and related nucleotide-binding proteins; hypothetical protein 32881 12350192 HPSA_00145 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770666.1 32468 D 907239 CDS YP_005770667.1 385221534 12350193 32883..33158 1 NC_017361.1 COG2127 Uncharacterized conserved protein; ATP-dependent Clp protease adapter protein clpS 33158 12350193 HPSA_00150 Helicobacter pylori SouthAfrica7 ATP-dependent Clp protease adapter protein clpS YP_005770667.1 32883 D 907239 CDS YP_005770668.1 385221535 12350194 33158..35380 1 NC_017361.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease, ATP-binding subunit ClpA 35380 12350194 HPSA_00155 Helicobacter pylori SouthAfrica7 ATP-dependent Clp protease, ATP-binding subunit ClpA YP_005770668.1 33158 D 907239 CDS YP_005770669.1 385221536 12350195 35370..35720 1 NC_017361.1 COG0853 Aspartate 1-decarboxylase; aspartate alpha-decarboxylase 35720 12350195 HPSA_00160 Helicobacter pylori SouthAfrica7 aspartate alpha-decarboxylase YP_005770669.1 35370 D 907239 CDS YP_005770670.1 385221537 12350196 35731..36024 1 NC_017361.1 COG0718 Uncharacterized protein conserved in bacteria; hypothetical protein 36024 12350196 HPSA_00165 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770670.1 35731 D 907239 CDS YP_005770671.1 385221538 12350197 36024..37019 1 NC_017361.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; hypothetical protein 37019 12350197 HPSA_00170 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770671.1 36024 D 907239 CDS YP_005770672.1 385221539 12350198 37025..38089 1 NC_017361.1 hypothetical protein 38089 12350198 HPSA_00175 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770672.1 37025 D 907239 CDS YP_005770673.1 385221540 12350199 38105..38218 1 NC_017361.1 Comb7 competence protein 38218 12350199 HPSA_00180 Helicobacter pylori SouthAfrica7 Comb7 competence protein YP_005770673.1 38105 D 907239 CDS YP_005770674.1 385221541 12350200 38215..38958 1 NC_017361.1 COG3736 Type IV secretory pathway, component VirB8; ComB1 protein 38958 12350200 HPSA_00185 Helicobacter pylori SouthAfrica7 ComB1 protein YP_005770674.1 38215 D 907239 CDS YP_005770675.1 385221542 12350201 38958..39938 1 NC_017361.1 COG3504 Type IV secretory pathway, VirB9 components; ComB2 protein 39938 12350201 HPSA_00190 Helicobacter pylori SouthAfrica7 ComB2 protein YP_005770675.1 38958 D 907239 CDS YP_005770676.1 385221543 12350202 39931..41073 1 NC_017361.1 COG2948 Type IV secretory pathway, VirB10 components; ComB10 competence protein 41073 12350202 HPSA_00195 Helicobacter pylori SouthAfrica7 ComB10 competence protein YP_005770676.1 39931 D 907239 CDS YP_005770677.1 385221544 12350203 41138..42550 1 NC_017361.1 COG0836 Mannose-1-phosphate guanylyltransferase; mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase 42550 12350203 HPSA_00200 Helicobacter pylori SouthAfrica7 mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase YP_005770677.1 41138 D 907239 CDS YP_005770678.1 385221545 12350204 42570..43715 1 NC_017361.1 COG1089 GDP-D-mannose dehydratase; GDP-D-mannose dehydratase 43715 12350204 HPSA_00205 Helicobacter pylori SouthAfrica7 GDP-D-mannose dehydratase YP_005770678.1 42570 D 907239 CDS YP_005770679.1 385221546 12350205 43708..44640 1 NC_017361.1 COG0451 Nucleoside-diphosphate-sugar epimerases; GDP-fucose synthetase 44640 12350205 HPSA_00210 Helicobacter pylori SouthAfrica7 GDP-fucose synthetase YP_005770679.1 43708 D 907239 CDS YP_005770680.1 385221547 12350206 44757..44903 1 NC_017361.1 hypothetical protein 44903 12350206 HPSA_00215 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770680.1 44757 D 907239 CDS YP_005770681.1 385221548 12350207 complement(45003..45425) 1 NC_017361.1 hypothetical protein 45425 12350207 HPSA_00220 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770681.1 45003 R 907239 CDS YP_005770682.1 385221549 12350208 complement(45343..45471) 1 NC_017361.1 hypothetical protein 45471 12350208 HPSA_00225 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770682.1 45343 R 907239 CDS YP_005770683.1 385221550 12350209 complement(45588..46586) 1 NC_017361.1 COG0309 Hydrogenase maturation factor; hydrogenase expression/formation protein 46586 12350209 HPSA_00230 Helicobacter pylori SouthAfrica7 hydrogenase expression/formation protein YP_005770683.1 45588 R 907239 CDS YP_005770684.1 385221551 12350210 complement(46598..48871) 1 NC_017361.1 COG0068 Hydrogenase maturation factor; transcriptional regulatory protein HypF 48871 12350210 HPSA_00235 Helicobacter pylori SouthAfrica7 transcriptional regulatory protein HypF YP_005770684.1 46598 R 907239 CDS YP_005770685.1 385221552 12350211 complement(48847..49839) 1 NC_017361.1 COG2957 Peptidylarginine deiminase and related enzymes; hypothetical protein 49839 12350211 HPSA_00240 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770685.1 48847 R 907239 CDS YP_005770686.1 385221553 12350212 complement(49902..50600) 1 NC_017361.1 COG0863 DNA modification methylase; adenine specific DNA methyltransferase (putative type II) 50600 12350212 HPSA_00245 Helicobacter pylori SouthAfrica7 adenine specific DNA methyltransferase (putative type II) YP_005770686.1 49902 R 907239 CDS YP_005770687.1 385221554 12350213 complement(50578..51663) 1 NC_017361.1 COG0270 Site-specific DNA methylase; cytosine specific DNA methyltransferase 51663 12350213 HPSA_00250 Helicobacter pylori SouthAfrica7 cytosine specific DNA methyltransferase YP_005770687.1 50578 R 907239 CDS YP_005770688.1 385221555 12350214 complement(51712..52887) 1 NC_017361.1 COG1403 Restriction endonuclease; restriction endonuclease 52887 12350214 HPSA_00255 Helicobacter pylori SouthAfrica7 restriction endonuclease YP_005770688.1 51712 R 907239 CDS YP_005770689.1 385221556 12350215 complement(53090..54580) 1 NC_017361.1 COG0591 Na+/proline symporter; sodium/proline symporter 54580 12350215 HPSA_00260 Helicobacter pylori SouthAfrica7 sodium/proline symporter YP_005770689.1 53090 R 907239 CDS YP_005770690.1 385221557 12350216 complement(54604..58161) 1 NC_017361.1 COG0506 Proline dehydrogenase; bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase 58161 12350216 HPSA_00265 Helicobacter pylori SouthAfrica7 bifunctional proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase YP_005770690.1 54604 R 907239 CDS YP_005770691.1 385221558 12350217 58541..58756 1 NC_017361.1 hypothetical protein 58756 12350217 HPSA_00270 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770691.1 58541 D 907239 CDS YP_005770692.1 385221559 12350218 59424..60032 1 NC_017361.1 hypothetical protein 60032 12350218 HPSA_00275 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770692.1 59424 D 907239 CDS YP_005770693.1 385221560 12350219 60034..60822 1 NC_017361.1 COG1511 Predicted membrane protein; hypothetical protein 60822 12350219 HPSA_00280 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770693.1 60034 D 907239 CDS YP_005770694.1 385221561 12350220 60812..61465 1 NC_017361.1 hypothetical protein 61465 12350220 HPSA_00285 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770694.1 60812 D 907239 CDS YP_005770695.1 385221562 12350221 63855..64421 1 NC_017361.1 hypothetical protein 64421 12350221 HPSA_00300 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770695.1 63855 D 907239 CDS YP_005770696.1 385221563 12350222 64437..64697 1 NC_017361.1 hypothetical protein 64697 12350222 HPSA_00305 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770696.1 64437 D 907239 CDS YP_005770697.1 385221564 12350223 64708..66411 1 NC_017361.1 hypothetical protein 66411 12350223 HPSA_00310 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770697.1 64708 D 907239 CDS YP_005770698.1 385221565 12350224 66381..66806 1 NC_017361.1 hypothetical protein 66806 12350224 HPSA_00315 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770698.1 66381 D 907239 CDS YP_005770699.1 385221566 12350225 67170..67946 1 NC_017361.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; ATP-binding protein 67946 12350225 HPSA_00330 Helicobacter pylori SouthAfrica7 ATP-binding protein YP_005770699.1 67170 D 907239 CDS YP_005770700.1 385221567 12350226 67984..68082 1 NC_017361.1 ATP-binding protein 68082 12350226 HPSA_00335 Helicobacter pylori SouthAfrica7 ATP-binding protein YP_005770700.1 67984 D 907239 CDS YP_005770701.1 385221568 12350227 68079..69614 1 NC_017361.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; ATP-binding protein 69614 12350227 HPSA_00340 Helicobacter pylori SouthAfrica7 ATP-binding protein YP_005770701.1 68079 D 907239 CDS YP_005770702.1 385221569 12350228 complement(69947..70729) 1 NC_017361.1 COG0829 Urease accessory protein UreH; urease accessory protein UreD 70729 12350228 HPSA_00345 Helicobacter pylori SouthAfrica7 urease accessory protein UreD YP_005770702.1 69947 R 907239 CDS YP_005770703.1 385221570 12350229 complement(70729..71328) 1 NC_017361.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; urease accessory protein UreG 71328 12350229 HPSA_00350 Helicobacter pylori SouthAfrica7 urease accessory protein UreG YP_005770703.1 70729 R 907239 CDS YP_005770704.1 385221571 12350230 complement(71359..72105) 1 NC_017361.1 COG0830 Urease accessory protein UreF; hypothetical protein 72105 12350230 HPSA_00355 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770704.1 71359 R 907239 CDS YP_005770705.1 385221572 12350231 complement(72126..72638) 1 NC_017361.1 COG2371 Urease accessory protein UreE; urease accessory protein UreE 72638 ureE 12350231 ureE Helicobacter pylori SouthAfrica7 urease accessory protein UreE YP_005770705.1 72126 R 907239 CDS YP_005770706.1 385221573 12350232 complement(72640..73227) 1 NC_017361.1 COG1138 Cytochrome c biogenesis factor; Urease accessory protein ureI 73227 12350232 HPSA_00365 Helicobacter pylori SouthAfrica7 Urease accessory protein ureI YP_005770706.1 72640 R 907239 CDS YP_005770707.1 385221574 12350233 complement(73419..75128) 1 NC_017361.1 COG0804 Urea amidohydrolase (urease) alpha subunit; urease subunit beta 75128 ureB 12350233 ureB Helicobacter pylori SouthAfrica7 urease subunit beta YP_005770707.1 73419 R 907239 CDS YP_005770708.1 385221575 12350234 complement(75132..75848) 1 NC_017361.1 COG0831 Urea amidohydrolase (urease) gamma subunit; urease subunit alpha 75848 12350234 HPSA_00375 Helicobacter pylori SouthAfrica7 urease subunit alpha YP_005770708.1 75132 R 907239 CDS YP_005770709.1 385221576 12350236 complement(76190..76663) 1 NC_017361.1 COG0597 Lipoprotein signal peptidase; lipoprotein signal peptidase 76663 lspA 12350236 lspA Helicobacter pylori SouthAfrica7 lipoprotein signal peptidase YP_005770709.1 76190 R 907239 CDS YP_005770710.1 385221577 12350237 complement(76657..77994) 1 NC_017361.1 COG1109 Phosphomannomutase; phosphoglucosamine mutase 77994 glmM 12350237 glmM Helicobacter pylori SouthAfrica7 phosphoglucosamine mutase YP_005770710.1 76657 R 907239 CDS YP_005770711.1 385221578 12350238 78084..78353 1 NC_017361.1 COG0268 Ribosomal protein S20; 30S ribosomal protein S20 78353 rpsT 12350238 rpsT Helicobacter pylori SouthAfrica7 30S ribosomal protein S20 YP_005770711.1 78084 D 907239 CDS YP_005770712.1 385221579 12350239 78478..79536 1 NC_017361.1 COG0216 Protein chain release factor A; peptide chain release factor 1 79536 prfA 12350239 prfA Helicobacter pylori SouthAfrica7 peptide chain release factor 1 YP_005770712.1 78478 D 907239 CDS YP_005770713.1 385221580 12350240 80119..80373 1 NC_017361.1 hypothetical protein 80373 12350240 HPSA_00405 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770713.1 80119 D 907239 CDS YP_005770714.1 385221581 12350241 80385..82154 1 NC_017361.1 outer membrane protein HorA 82154 12350241 HPSA_00410 Helicobacter pylori SouthAfrica7 outer membrane protein HorA YP_005770714.1 80385 D 907239 CDS YP_005770715.1 385221582 12350242 82396..84195 1 NC_017361.1 hypothetical protein 84195 12350242 HPSA_00415 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770715.1 82396 D 907239 CDS YP_005770716.1 385221583 12350243 complement(84518..86539) 1 NC_017361.1 COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 86539 12350243 HPSA_00420 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770716.1 84518 R 907239 CDS YP_005770717.1 385221584 12350244 complement(86685..87074) 1 NC_017361.1 COG0103 Ribosomal protein S9; 30S ribosomal protein S9 87074 rpsI 12350244 rpsI Helicobacter pylori SouthAfrica7 30S ribosomal protein S9 YP_005770717.1 86685 R 907239 CDS YP_005770718.1 385221585 12350245 complement(87071..87496) 1 NC_017361.1 COG0102 Ribosomal protein L13; 50S ribosomal protein L13 87496 rplM 12350245 rplM Helicobacter pylori SouthAfrica7 50S ribosomal protein L13 YP_005770718.1 87071 R 907239 CDS YP_005770719.1 385221586 12350246 complement(87831..88019) 1 NC_017361.1 hypothetical protein 88019 12350246 HPSA_00435 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770719.1 87831 R 907239 CDS YP_005770720.1 385221587 12350247 complement(88026..89378) 1 NC_017361.1 COG0579 Predicted dehydrogenase; hypothetical protein 89378 12350247 HPSA_00440 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770720.1 88026 R 907239 CDS YP_005770721.1 385221588 12350248 complement(89432..90811) 1 NC_017361.1 COG0791 Cell wall-associated hydrolases (invasion-associated proteins); hypothetical protein 90811 12350248 HPSA_00445 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770721.1 89432 R 907239 CDS YP_005770722.1 385221589 12350249 complement(90824..92881) 1 NC_017361.1 COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); RNA polymerase sigma factor RpoD 92881 12350249 HPSA_00450 Helicobacter pylori SouthAfrica7 RNA polymerase sigma factor RpoD YP_005770722.1 90824 R 907239 CDS YP_005770723.1 385221590 12350250 93115..93249 1 NC_017361.1 hypothetical protein 93249 12350250 HPSA_00455 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770723.1 93115 D 907239 CDS YP_005770724.1 385221591 12350251 complement(93276..93971) 1 NC_017361.1 COG0775 Nucleoside phosphorylase; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 93971 12350251 HPSA_00460 Helicobacter pylori SouthAfrica7 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_005770724.1 93276 R 907239 CDS YP_005770725.1 385221592 12350252 complement(93982..94911) 1 NC_017361.1 COG0331 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 94911 12350252 HPSA_00465 Helicobacter pylori SouthAfrica7 malonyl CoA-acyl carrier protein transacylase YP_005770725.1 93982 R 907239 CDS YP_005770726.1 385221593 12350254 95299..96189 1 NC_017361.1 type II restriction enzyme R protein (hsdR) 96189 12350254 HPSA_00475 Helicobacter pylori SouthAfrica7 type II restriction enzyme R protein (hsdR) YP_005770726.1 95299 D 907239 CDS YP_005770727.1 385221594 12350255 96170..97024 1 NC_017361.1 COG0863 DNA modification methylase; typeII adenine methyltransferase 97024 12350255 HPSA_00480 Helicobacter pylori SouthAfrica7 typeII adenine methyltransferase YP_005770727.1 96170 D 907239 CDS YP_005770728.1 385221595 12350256 complement(97021..97920) 1 NC_017361.1 putative alpha(1,2)fucosyltransferase 97920 12350256 HPSA_00485 Helicobacter pylori SouthAfrica7 putative alpha(1,2)fucosyltransferase YP_005770728.1 97021 R 907239 CDS YP_005770729.1 385221596 12350257 complement(98020..98550) 1 NC_017361.1 hypothetical protein 98550 12350257 HPSA_00490 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770729.1 98020 R 907239 CDS YP_005770730.1 385221597 12350258 98623..99567 1 NC_017361.1 COG1052 Lactate dehydrogenase and related dehydrogenases; 2-hydroxyacid dehydrogenase 99567 12350258 HPSA_00495 Helicobacter pylori SouthAfrica7 2-hydroxyacid dehydrogenase YP_005770730.1 98623 D 907239 CDS YP_005770731.1 385221598 12350259 99619..99750 1 NC_017361.1 hypothetical protein 99750 12350259 HPSA_00500 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770731.1 99619 D 907239 CDS YP_005770732.1 385221599 12350260 complement(99802..100515) 1 NC_017361.1 hypothetical protein 100515 12350260 HPSA_00505 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770732.1 99802 R 907239 CDS YP_005770733.1 385221600 12350261 complement(100600..102054) 1 NC_017361.1 COG0498 Threonine synthase; threonine synthase 102054 12350261 HPSA_00510 Helicobacter pylori SouthAfrica7 threonine synthase YP_005770733.1 100600 R 907239 CDS YP_005770734.1 385221601 12350262 102256..104283 1 NC_017361.1 COG0840 Methyl-accepting chemotaxis protein; putative methyl-accepting chemotaxis protein 104283 12350262 HPSA_00515 Helicobacter pylori SouthAfrica7 putative methyl-accepting chemotaxis protein YP_005770734.1 102256 D 907239 CDS YP_005770735.1 385221602 12350263 104283..105389 1 NC_017361.1 COG1636 Uncharacterized protein conserved in bacteria; hypothetical protein 105389 12350263 HPSA_00520 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770735.1 104283 D 907239 CDS YP_005770736.1 385221603 12350264 105789..106550 1 NC_017361.1 hypothetical protein 106550 12350264 HPSA_00525 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770736.1 105789 D 907239 CDS YP_005770737.1 385221604 12350265 complement(106522..107292) 1 NC_017361.1 COG0463 Glycosyltransferases involved in cell wall biogenesis; glycosyl transferase family protein 107292 12350265 HPSA_00530 Helicobacter pylori SouthAfrica7 glycosyl transferase family protein YP_005770737.1 106522 R 907239 CDS YP_005770738.1 385221605 12350266 complement(107329..109026) 1 NC_017361.1 COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 109026 12350266 HPSA_00535 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770738.1 107329 R 907239 CDS YP_005770739.1 385221606 12350267 complement(109603..110070) 1 NC_017361.1 COG1854 LuxS protein involved in autoinducer AI2 synthesis; S-ribosylhomocysteinase 110070 12350267 HPSA_00540 Helicobacter pylori SouthAfrica7 S-ribosylhomocysteinase YP_005770739.1 109603 R 907239 CDS YP_005770740.1 385221607 12350268 complement(110107..111249) 1 NC_017361.1 COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases; cystathionine gamma-synthase 111249 12350268 HPSA_00545 Helicobacter pylori SouthAfrica7 cystathionine gamma-synthase YP_005770740.1 110107 R 907239 CDS YP_005770741.1 385221608 12350269 complement(111274..112188) 1 NC_017361.1 COG0031 Cysteine synthase; cysteine synthetase 112188 12350269 HPSA_00550 Helicobacter pylori SouthAfrica7 cysteine synthetase YP_005770741.1 111274 R 907239 CDS YP_005770742.1 385221609 12350270 112303..112905 1 NC_017361.1 COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase; hypothetical protein 112905 12350270 HPSA_00555 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770742.1 112303 D 907239 CDS YP_005770743.1 385221610 12350271 complement(113067..114929) 1 NC_017361.1 COG0443 Molecular chaperone; molecular chaperone DnaK 114929 dnaK 12350271 dnaK Helicobacter pylori SouthAfrica7 molecular chaperone DnaK YP_005770743.1 113067 R 907239 CDS YP_005770744.1 385221611 12350272 complement(114957..115511) 1 NC_017361.1 COG0576 Molecular chaperone GrpE (heat shock protein); heat shock protein GrpE 115511 12350272 HPSA_00565 Helicobacter pylori SouthAfrica7 heat shock protein GrpE YP_005770744.1 114957 R 907239 CDS YP_005770745.1 385221612 12350273 complement(115508..116278) 1 NC_017361.1 COG1420 Transcriptional regulator of heat shock gene; heat-inducible transcription repressor 116278 12350273 HPSA_00570 Helicobacter pylori SouthAfrica7 heat-inducible transcription repressor YP_005770745.1 115508 R 907239 CDS YP_005770746.1 385221613 12350274 116552..117190 1 NC_017361.1 COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases; hypothetical protein 117190 12350274 HPSA_00575 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770746.1 116552 D 907239 CDS YP_005770747.1 385221614 12350275 117210..117506 1 NC_017361.1 hypothetical protein 117506 12350275 HPSA_00580 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770747.1 117210 D 907239 CDS YP_005770748.1 385221615 12350276 complement(117516..119399) 1 NC_017361.1 COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein 119399 12350276 HPSA_00585 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770748.1 117516 R 907239 CDS YP_005770749.1 385221616 12350277 complement(119460..121004) 1 NC_017361.1 COG1344 Flagellin and related hook-associated proteins; flagellin B 121004 12350277 HPSA_00590 Helicobacter pylori SouthAfrica7 flagellin B YP_005770749.1 119460 R 907239 CDS YP_005770750.1 385221617 12350278 121169..123379 1 NC_017361.1 COG0550 Topoisomerase IA; DNA topoisomerase I 123379 12350278 HPSA_00595 Helicobacter pylori SouthAfrica7 DNA topoisomerase I YP_005770750.1 121169 D 907239 CDS YP_005770751.1 385221618 12350279 123372..124298 1 NC_017361.1 COG0731 Fe-S oxidoreductases; hypothetical protein 124298 12350279 HPSA_00600 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770751.1 123372 D 907239 CDS YP_005770752.1 385221619 12350280 complement(124441..125658) 1 NC_017361.1 hypothetical protein 125658 12350280 HPSA_00605 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770752.1 124441 R 907239 CDS YP_005770753.1 385221620 12350281 complement(125755..128193) 1 NC_017361.1 COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase; phosphoenolpyruvate synthase 128193 12350281 HPSA_00610 Helicobacter pylori SouthAfrica7 phosphoenolpyruvate synthase YP_005770753.1 125755 R 907239 CDS YP_005770754.1 385221621 12350282 128397..128510 1 NC_017361.1 hypothetical protein 128510 12350282 HPSA_00615 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770754.1 128397 D 907239 CDS YP_005770755.1 385221622 12350283 128550..130388 1 NC_017361.1 COG0441 Threonyl-tRNA synthetase; threonyl-tRNA synthetase 130388 thrS 12350283 thrS Helicobacter pylori SouthAfrica7 threonyl-tRNA synthetase YP_005770755.1 128550 D 907239 CDS YP_005770756.1 385221623 12350284 130385..130996 1 NC_017361.1 COG0290 Translation initiation factor 3 (IF-3); translation initiation factor IF-3 130996 infC 12350284 infC Helicobacter pylori SouthAfrica7 translation initiation factor IF-3 YP_005770756.1 130385 D 907239 CDS YP_005770757.1 385221624 12350285 130977..131171 1 NC_017361.1 COG0291 Ribosomal protein L35; 50S ribosomal protein L35 131171 rpmI 12350285 rpmI Helicobacter pylori SouthAfrica7 50S ribosomal protein L35 YP_005770757.1 130977 D 907239 CDS YP_005770758.1 385221625 12350286 131266..131616 1 NC_017361.1 COG0292 Ribosomal protein L20; 50S ribosomal protein L20 131616 rplT 12350286 rplT Helicobacter pylori SouthAfrica7 50S ribosomal protein L20 YP_005770758.1 131266 D 907239 CDS YP_005770759.1 385221626 12350287 131818..132681 1 NC_017361.1 Outer membrane protein HorB; putative signal peptide 132681 12350287 HPSA_00640 Helicobacter pylori SouthAfrica7 Outer membrane protein HorB; putative signal peptide YP_005770759.1 131818 D 907239 CDS YP_005770760.1 385221627 12350288 133031..133468 1 NC_017361.1 hypothetical protein 133468 12350288 HPSA_00645 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770760.1 133031 D 907239 CDS YP_005770761.1 385221628 12350289 133704..134567 1 NC_017361.1 hypothetical protein 134567 12350289 HPSA_00650 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770761.1 133704 D 907239 CDS YP_005770762.1 385221629 12350290 complement(135232..135330) 1 NC_017361.1 hypothetical protein 135330 12350290 HPSA_00655 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770762.1 135232 R 907239 CDS YP_005770763.1 385221630 12350291 135329..135445 1 NC_017361.1 hypothetical protein 135445 12350291 HPSA_00660 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770763.1 135329 D 907239 CDS YP_005770764.1 385221631 12350292 complement(135630..136997) 1 NC_017361.1 COG1760 L-serine deaminase; L-serine dehydratase 136997 12350292 HPSA_00665 Helicobacter pylori SouthAfrica7 L-serine dehydratase YP_005770764.1 135630 R 907239 CDS YP_005770765.1 385221632 12350293 complement(136997..138238) 1 NC_017361.1 COG0814 Amino acid permeases; L-serine transporter 138238 12350293 HPSA_00670 Helicobacter pylori SouthAfrica7 L-serine transporter YP_005770765.1 136997 R 907239 CDS YP_005770766.1 385221633 12350294 138419..139768 1 NC_017361.1 COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; phospho-2-dehydro-3-deoxyheptonate aldolase 139768 12350294 HPSA_00675 Helicobacter pylori SouthAfrica7 phospho-2-dehydro-3-deoxyheptonate aldolase YP_005770766.1 138419 D 907239 CDS YP_005770767.1 385221634 12350295 140057..140191 1 NC_017361.1 hypothetical protein 140191 12350295 HPSA_00680 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770767.1 140057 D 907239 CDS YP_005770768.1 385221635 12350296 complement(140414..140872) 1 NC_017361.1 COG1225 Peroxiredoxin; bacterioferritin comigratory protein 140872 12350296 HPSA_00685 Helicobacter pylori SouthAfrica7 bacterioferritin comigratory protein YP_005770768.1 140414 R 907239 CDS YP_005770769.1 385221636 12350297 complement(140882..141517) 1 NC_017361.1 COG1556 Uncharacterized conserved protein; hypothetical protein 141517 12350297 HPSA_00690 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770769.1 140882 R 907239 CDS YP_005770770.1 385221637 12350298 complement(141510..142955) 1 NC_017361.1 COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain; iron-sulfur cluster binding protein 142955 12350298 HPSA_00695 Helicobacter pylori SouthAfrica7 iron-sulfur cluster binding protein YP_005770770.1 141510 R 907239 CDS YP_005770771.1 385221638 12350299 complement(142984..143712) 1 NC_017361.1 COG0247 Fe-S oxidoreductase; Fe-S oxidoreductase 143712 12350299 HPSA_00700 Helicobacter pylori SouthAfrica7 Fe-S oxidoreductase YP_005770771.1 142984 R 907239 CDS YP_005770772.1 385221639 12350300 143933..145582 1 NC_017361.1 COG1620 L-lactate permease; L-lactate permease 145582 12350300 HPSA_00705 Helicobacter pylori SouthAfrica7 L-lactate permease YP_005770772.1 143933 D 907239 CDS YP_005770773.1 385221640 12350301 145631..147286 1 NC_017361.1 COG1620 L-lactate permease; L-lactate permease 147286 12350301 HPSA_00710 Helicobacter pylori SouthAfrica7 L-lactate permease YP_005770773.1 145631 D 907239 CDS YP_005770774.1 385221641 12350302 complement(147310..148296) 1 NC_017361.1 COG1194 A/G-specific DNA glycosylase; DNA glycosylase MutY 148296 12350302 HPSA_00715 Helicobacter pylori SouthAfrica7 DNA glycosylase MutY YP_005770774.1 147310 R 907239 CDS YP_005770775.1 385221642 12350303 complement(148297..149745) 1 NC_017361.1 COG0471 Di- and tricarboxylate transporters; hypothetical protein 149745 12350303 HPSA_00720 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770775.1 148297 R 907239 CDS YP_005770776.1 385221643 12350304 149915..151381 1 NC_017361.1 COG3278 Cbb3-type cytochrome oxidase, subunit 1; cbb3-type cytochrome c oxidase subunit I 151381 12350304 HPSA_00725 Helicobacter pylori SouthAfrica7 cbb3-type cytochrome c oxidase subunit I YP_005770776.1 149915 D 907239 CDS YP_005770777.1 385221644 12350305 151393..152091 1 NC_017361.1 COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; cbb3-type cytochrome c oxidase subunit II 152091 12350305 HPSA_00730 Helicobacter pylori SouthAfrica7 cbb3-type cytochrome c oxidase subunit II YP_005770777.1 151393 D 907239 CDS YP_005770778.1 385221645 12350306 152102..152320 1 NC_017361.1 cytochrome c oxidase subunit Q 152320 12350306 HPSA_00735 Helicobacter pylori SouthAfrica7 cytochrome c oxidase subunit Q YP_005770778.1 152102 D 907239 CDS YP_005770779.1 385221646 12350307 152322..153200 1 NC_017361.1 COG2010 Cytochrome c, mono- and diheme variants; cytochrome c oxidase, cbb3-type subunit III 153200 12350307 HPSA_00740 Helicobacter pylori SouthAfrica7 cytochrome c oxidase, cbb3-type subunit III YP_005770779.1 152322 D 907239 CDS YP_005770780.1 385221647 12350308 153211..153417 1 NC_017361.1 hypothetical protein 153417 12350308 HPSA_00745 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770780.1 153211 D 907239 CDS YP_005770781.1 385221648 12350309 153414..153521 1 NC_017361.1 hypothetical protein 153521 12350309 HPSA_00750 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770781.1 153414 D 907239 CDS YP_005770782.1 385221649 12350310 153518..154105 1 NC_017361.1 COG0443 Molecular chaperone; hypothetical protein 154105 12350310 HPSA_00755 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770782.1 153518 D 907239 CDS YP_005770783.1 385221650 12350311 154117..154698 1 NC_017361.1 hypothetical protein 154698 12350311 HPSA_00760 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770783.1 154117 D 907239 CDS YP_005770784.1 385221651 12350312 155065..155832 1 NC_017361.1 hypothetical protein 155832 12350312 HPSA_00765 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770784.1 155065 D 907239 CDS YP_005770785.1 385221652 12350313 complement(155829..156692) 1 NC_017361.1 COG2107 Predicted periplasmic solute-binding protein; hypothetical protein 156692 12350313 HPSA_00770 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770785.1 155829 R 907239 CDS YP_005770786.1 385221653 12350314 156792..157835 1 NC_017361.1 COG0468 RecA/RadA recombinase; recombinase A 157835 recA 12350314 recA Helicobacter pylori SouthAfrica7 recombinase A YP_005770786.1 156792 D 907239 CDS YP_005770787.1 385221654 12350315 157846..159126 1 NC_017361.1 COG0148 Enolase; phosphopyruvate hydratase 159126 eno 12350315 eno Helicobacter pylori SouthAfrica7 phosphopyruvate hydratase YP_005770787.1 157846 D 907239 CDS YP_005770788.1 385221655 12350316 159119..159394 1 NC_017361.1 hypothetical protein 159394 12350316 HPSA_00785 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770788.1 159119 D 907239 CDS YP_005770789.1 385221656 12350317 159411..160007 1 NC_017361.1 hypothetical protein 160007 12350317 HPSA_00790 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770789.1 159411 D 907239 CDS YP_005770790.1 385221657 12350318 160012..160500 1 NC_017361.1 COG0703 Shikimate kinase; shikimate kinase 160500 aroK 12350318 aroK Helicobacter pylori SouthAfrica7 shikimate kinase YP_005770790.1 160012 D 907239 CDS YP_005770791.1 385221658 12350319 160522..161478 1 NC_017361.1 COG0840 Methyl-accepting chemotaxis protein; hypothetical protein 161478 12350319 HPSA_00800 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770791.1 160522 D 907239 CDS YP_005770792.1 385221659 12350320 complement(161475..162581) 1 NC_017361.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide1, 2-glycosyltransferase 162581 12350320 HPSA_00805 Helicobacter pylori SouthAfrica7 lipopolysaccharide1, 2-glycosyltransferase YP_005770792.1 161475 R 907239 CDS YP_005770793.1 385221660 12350321 162734..163648 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 163648 12350321 HPSA_00810 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770793.1 162734 D 907239 CDS YP_005770794.1 385221661 12350322 164368..164529 1 NC_017361.1 hypothetical protein 164529 12350322 HPSA_00815 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770794.1 164368 D 907239 CDS YP_005770795.1 385221662 12350323 164702..164842 1 NC_017361.1 cag pathogenicity island protein beta 164842 12350323 HPSA_00820 Helicobacter pylori SouthAfrica7 cag pathogenicity island protein beta YP_005770795.1 164702 D 907239 CDS YP_005770796.1 385221663 12350324 complement(164850..165572) 1 NC_017361.1 COG0217 Uncharacterized conserved protein; hypothetical protein 165572 12350324 HPSA_00825 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770796.1 164850 R 907239 CDS YP_005770797.1 385221664 12350325 complement(165573..166544) 1 NC_017361.1 COG0113 Delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 166544 12350325 HPSA_00830 Helicobacter pylori SouthAfrica7 delta-aminolevulinic acid dehydratase YP_005770797.1 165573 R 907239 CDS YP_005770798.1 385221665 12350326 complement(166615..167898) 1 NC_017361.1 COG0642 Signal transduction histidine kinase; putative histidine kinase sensor protein 167898 12350326 HPSA_00835 Helicobacter pylori SouthAfrica7 putative histidine kinase sensor protein YP_005770798.1 166615 R 907239 CDS YP_005770799.1 385221666 12350327 complement(167922..168599) 1 NC_017361.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; response regulator (ompR) 168599 12350327 HPSA_00840 Helicobacter pylori SouthAfrica7 response regulator (ompR) YP_005770799.1 167922 R 907239 CDS YP_005770800.1 385221667 12350328 complement(169269..169742) 1 NC_017361.1 hypothetical protein 169742 12350328 HPSA_00845 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770800.1 169269 R 907239 CDS YP_005770801.1 385221668 12350329 complement(169733..169996) 1 NC_017361.1 COG0457 FOG: TPR repeat; hypothetical protein 169996 12350329 HPSA_00850 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770801.1 169733 R 907239 CDS YP_005770802.1 385221669 12350330 complement(170015..171280) 1 NC_017361.1 COG0826 Collagenase and related proteases; collagenase 171280 12350330 HPSA_00855 Helicobacter pylori SouthAfrica7 collagenase YP_005770802.1 170015 R 907239 CDS YP_005770803.1 385221670 12350331 complement(171283..172020) 1 NC_017361.1 hypothetical protein 172020 12350331 HPSA_00860 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770803.1 171283 R 907239 CDS YP_005770804.1 385221671 12350332 complement(172090..173181) 1 NC_017361.1 COG1186 Protein chain release factor B; peptide chain release factor 2 173181 prfB 12350332 prfB Helicobacter pylori SouthAfrica7 peptide chain release factor 2 YP_005770804.1 172090 R 907239 CDS YP_005770805.1 385221672 12350333 complement(173242..174417) 1 NC_017361.1 COG0303 Molybdopterin biosynthesis enzyme; molybdopterin biosynthesis protein 174417 12350333 HPSA_00870 Helicobacter pylori SouthAfrica7 molybdopterin biosynthesis protein YP_005770805.1 173242 R 907239 CDS YP_005770806.1 385221673 12350334 complement(174427..175194) 1 NC_017361.1 COG1684 Flagellar biosynthesis pathway, component FliR; flagellar biosynthesis protein FliR 175194 fliR 12350334 fliR Helicobacter pylori SouthAfrica7 flagellar biosynthesis protein FliR YP_005770806.1 174427 R 907239 CDS YP_005770807.1 385221674 12350335 complement(175169..175906) 1 NC_017361.1 hypothetical protein 175906 12350335 HPSA_00880 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770807.1 175169 R 907239 CDS YP_005770808.1 385221675 12350336 complement(176029..176247) 1 NC_017361.1 hypothetical protein 176247 12350336 HPSA_00885 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770808.1 176029 R 907239 CDS YP_005770809.1 385221676 12350337 176367..177266 1 NC_017361.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; putative peptidyl-prolyl cis-trans isomerase 177266 12350337 HPSA_00890 Helicobacter pylori SouthAfrica7 putative peptidyl-prolyl cis-trans isomerase YP_005770809.1 176367 D 907239 CDS YP_005770810.1 385221677 12350338 177279..178202 1 NC_017361.1 COG0191 Fructose/tagatose bisphosphate aldolase; fructose-bisphosphate aldolase 178202 12350338 HPSA_00895 Helicobacter pylori SouthAfrica7 fructose-bisphosphate aldolase YP_005770810.1 177279 D 907239 CDS YP_005770811.1 385221678 12350339 178224..178787 1 NC_017361.1 COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A); elongation factor P 178787 12350339 HPSA_00900 Helicobacter pylori SouthAfrica7 elongation factor P YP_005770811.1 178224 D 907239 CDS YP_005770812.1 385221679 12350340 complement(179176..180198) 1 NC_017361.1 COG2089 Sialic acid synthase; sialic acid synthase 180198 12350340 HPSA_00905 Helicobacter pylori SouthAfrica7 sialic acid synthase YP_005770812.1 179176 R 907239 CDS YP_005770813.1 385221680 12350341 complement(180201..180842) 1 NC_017361.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; ABC transporter ATP-binding protein 180842 12350341 HPSA_00910 Helicobacter pylori SouthAfrica7 ABC transporter ATP-binding protein YP_005770813.1 180201 R 907239 CDS YP_005770814.1 385221681 12350342 complement(180839..182116) 1 NC_017361.1 COG0815 Apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 182116 12350342 HPSA_00915 Helicobacter pylori SouthAfrica7 apolipoprotein N-acyltransferase YP_005770814.1 180839 R 907239 CDS YP_005770815.1 385221682 12350343 182335..183042 1 NC_017361.1 COG1286 Uncharacterized membrane protein, required for colicin V production; hypothetical protein 183042 12350343 HPSA_00920 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770815.1 182335 D 907239 CDS YP_005770816.1 385221683 12350344 183052..184557 1 NC_017361.1 COG1190 Lysyl-tRNA synthetase (class II); lysyl-tRNA synthetase 184557 lysS 12350344 lysS Helicobacter pylori SouthAfrica7 lysyl-tRNA synthetase YP_005770816.1 183052 D 907239 CDS YP_005770817.1 385221684 12350345 184557..185807 1 NC_017361.1 COG0112 Glycine/serine hydroxymethyltransferase; serine hydroxymethyltransferase 185807 12350345 HPSA_00930 Helicobacter pylori SouthAfrica7 serine hydroxymethyltransferase YP_005770817.1 184557 D 907239 CDS YP_005770818.1 385221685 12350346 185819..186361 1 NC_017361.1 hypothetical protein 186361 12350346 HPSA_00935 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770818.1 185819 D 907239 CDS YP_005770819.1 385221686 12350347 186383..187195 1 NC_017361.1 hypothetical protein 187195 12350347 HPSA_00940 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770819.1 186383 D 907239 CDS YP_005770820.1 385221687 12350348 187363..188016 1 NC_017361.1 COG0162 Tyrosyl-tRNA synthetase; hypothetical protein 188016 12350348 HPSA_00945 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770820.1 187363 D 907239 CDS YP_005770821.1 385221688 12350349 188603..189136 1 NC_017361.1 COG2862 Predicted membrane protein; hypothetical protein 189136 12350349 HPSA_00950 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770821.1 188603 D 907239 CDS YP_005770822.1 385221689 12350350 complement(189143..190651) 1 NC_017361.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; putative cardiolipin synthase 190651 12350350 HPSA_00955 Helicobacter pylori SouthAfrica7 putative cardiolipin synthase YP_005770822.1 189143 R 907239 CDS YP_005770823.1 385221690 12350351 complement(190672..191409) 1 NC_017361.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; fumarate reductase iron-sulfur subunit 191409 frdB 12350351 frdB Helicobacter pylori SouthAfrica7 fumarate reductase iron-sulfur subunit YP_005770823.1 190672 R 907239 CDS YP_005770824.1 385221691 12350352 complement(191402..193546) 1 NC_017361.1 COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; fumarate reductase flavoprotein subunit 193546 12350352 HPSA_00965 Helicobacter pylori SouthAfrica7 fumarate reductase flavoprotein subunit YP_005770824.1 191402 R 907239 CDS YP_005770825.1 385221692 12350353 complement(193556..194323) 1 NC_017361.1 COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit; fumarate reductase cytochrome b-556 subunit 194323 12350353 HPSA_00970 Helicobacter pylori SouthAfrica7 fumarate reductase cytochrome b-556 subunit YP_005770825.1 193556 R 907239 CDS YP_005770826.1 385221693 12350354 194539..195243 1 NC_017361.1 COG0149 Triosephosphate isomerase; triosephosphate isomerase 195243 tpiA 12350354 tpiA Helicobacter pylori SouthAfrica7 triosephosphate isomerase YP_005770826.1 194539 D 907239 CDS YP_005770827.1 385221694 12350355 195253..196080 1 NC_017361.1 COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); enoyl-ACP reductase 196080 12350355 HPSA_00980 Helicobacter pylori SouthAfrica7 enoyl-ACP reductase YP_005770827.1 195253 D 907239 CDS YP_005770828.1 385221695 12350356 196091..197101 1 NC_017361.1 COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 197101 lpxD 12350356 lpxD Helicobacter pylori SouthAfrica7 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_005770828.1 196091 D 907239 CDS YP_005770829.1 385221696 12350357 197165..198322 1 NC_017361.1 COG0192 S-adenosylmethionine synthetase; S-adenosylmethionine synthetase 198322 12350357 HPSA_00990 Helicobacter pylori SouthAfrica7 S-adenosylmethionine synthetase YP_005770829.1 197165 D 907239 CDS YP_005770830.1 385221697 12350358 198389..198802 1 NC_017361.1 COG0105 Nucleoside diphosphate kinase; nucleoside diphosphate kinase 198802 ndk 12350358 ndk Helicobacter pylori SouthAfrica7 nucleoside diphosphate kinase YP_005770830.1 198389 D 907239 CDS YP_005770831.1 385221698 12350359 198827..199183 1 NC_017361.1 hypothetical protein 199183 12350359 HPSA_01000 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770831.1 198827 D 907239 CDS YP_005770832.1 385221699 12350360 199206..199352 1 NC_017361.1 COG0333 Ribosomal protein L32; 50S ribosomal protein L32 199352 rpmF 12350360 rpmF Helicobacter pylori SouthAfrica7 50S ribosomal protein L32 YP_005770832.1 199206 D 907239 CDS YP_005770833.1 385221700 12350361 199438..200457 1 NC_017361.1 COG0416 Fatty acid/phospholipid biosynthesis enzyme; putative glycerol-3-phosphate acyltransferase PlsX 200457 12350361 HPSA_01010 Helicobacter pylori SouthAfrica7 putative glycerol-3-phosphate acyltransferase PlsX YP_005770833.1 199438 D 907239 CDS YP_005770834.1 385221701 12350362 200482..201474 1 NC_017361.1 COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III; 3-oxoacyl-ACP synthase 201474 12350362 HPSA_01015 Helicobacter pylori SouthAfrica7 3-oxoacyl-ACP synthase YP_005770834.1 200482 D 907239 CDS YP_005770835.1 385221702 12350363 201495..201797 1 NC_017361.1 hypothetical protein 201797 12350363 HPSA_01020 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770835.1 201495 D 907239 CDS YP_005770836.1 385221703 12350364 complement(202465..202848) 1 NC_017361.1 hypothetical protein 202848 12350364 HPSA_01025 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770836.1 202465 R 907239 CDS YP_005770837.1 385221704 12350365 complement(202926..206063) 1 NC_017361.1 COG1131 ABC-type multidrug transport system, ATPase component; hypothetical protein 206063 12350365 HPSA_01030 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770837.1 202926 R 907239 CDS YP_005770838.1 385221705 12350366 206206..207312 1 NC_017361.1 COG0489 ATPases involved in chromosome partitioning; ATP-binding protein 207312 12350366 HPSA_01035 Helicobacter pylori SouthAfrica7 ATP-binding protein YP_005770838.1 206206 D 907239 CDS YP_005770839.1 385221706 12350367 complement(207364..208404) 1 NC_017361.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; LPS 1,2-glycosyltransferase 208404 12350367 HPSA_01040 Helicobacter pylori SouthAfrica7 LPS 1,2-glycosyltransferase YP_005770839.1 207364 R 907239 CDS YP_005770840.1 385221707 12350368 complement(208418..208558) 1 NC_017361.1 lipopolysaccharide biosynthesis protein 208558 12350368 HPSA_01045 Helicobacter pylori SouthAfrica7 lipopolysaccharide biosynthesis protein YP_005770840.1 208418 R 907239 CDS YP_005770841.1 385221708 12350369 208705..210057 1 NC_017361.1 outer membrane protein 210057 12350369 HPSA_01050 Helicobacter pylori SouthAfrica7 outer membrane protein YP_005770841.1 208705 D 907239 CDS YP_005770842.1 385221709 12350370 210160..212025 1 NC_017361.1 COG0326 Molecular chaperone, HSP90 family; heat shock protein 90 212025 12350370 HPSA_01055 Helicobacter pylori SouthAfrica7 heat shock protein 90 YP_005770842.1 210160 D 907239 CDS YP_005770843.1 385221710 12350371 complement(212195..212947) 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 212947 12350371 HPSA_01060 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770843.1 212195 R 907239 CDS YP_005770844.1 385221711 12350372 complement(213388..214554) 1 NC_017361.1 COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases; succinyl-diaminopimelate desuccinylase 214554 12350372 HPSA_01065 Helicobacter pylori SouthAfrica7 succinyl-diaminopimelate desuccinylase YP_005770844.1 213388 R 907239 CDS YP_005770845.1 385221712 12350373 complement(214565..216430) 1 NC_017361.1 COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 216430 12350373 HPSA_01070 Helicobacter pylori SouthAfrica7 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_005770845.1 214565 R 907239 CDS YP_005770846.1 385221713 12350374 216526..218172 1 NC_017361.1 COG0471 Di- and tricarboxylate transporters; putative transporter 218172 12350374 HPSA_01075 Helicobacter pylori SouthAfrica7 putative transporter YP_005770846.1 216526 D 907239 CDS YP_005770847.1 385221714 12350375 218185..218985 1 NC_017361.1 COG0575 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 218985 12350375 HPSA_01080 Helicobacter pylori SouthAfrica7 phosphatidate cytidylyltransferase YP_005770847.1 218185 D 907239 CDS YP_005770848.1 385221715 12350376 218986..220077 1 NC_017361.1 COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 220077 12350376 HPSA_01085 Helicobacter pylori SouthAfrica7 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_005770848.1 218986 D 907239 CDS YP_005770849.1 385221716 12350377 220143..220454 1 NC_017361.1 hypothetical protein 220454 12350377 HPSA_01090 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770849.1 220143 D 907239 CDS YP_005770850.1 385221717 12350378 complement(220522..220617) 1 NC_017361.1 hypothetical protein 220617 12350378 HPSA_01095 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770850.1 220522 R 907239 CDS YP_005770851.1 385221718 12350379 220616..221290 1 NC_017361.1 hypothetical protein 221290 12350379 HPSA_01100 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770851.1 220616 D 907239 CDS YP_005770852.1 385221719 12350380 complement(221353..221904) 1 NC_017361.1 COG1881 Phospholipid-binding protein; hypothetical protein 221904 12350380 HPSA_01105 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770852.1 221353 R 907239 CDS YP_005770853.1 385221720 12350381 222049..222513 1 NC_017361.1 hypothetical protein 222513 12350381 HPSA_01110 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770853.1 222049 D 907239 CDS YP_005770854.1 385221721 12350382 222681..223844 1 NC_017361.1 COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; cysteine desulfurase 223844 12350382 HPSA_01115 Helicobacter pylori SouthAfrica7 cysteine desulfurase YP_005770854.1 222681 D 907239 CDS YP_005770855.1 385221722 12350383 223866..224846 1 NC_017361.1 COG0822 NifU homolog involved in Fe-S cluster formation; nifU-like protein 224846 12350383 HPSA_01120 Helicobacter pylori SouthAfrica7 nifU-like protein YP_005770855.1 223866 D 907239 CDS YP_005770856.1 385221723 12350384 225005..225238 1 NC_017361.1 hypothetical protein 225238 12350384 HPSA_01125 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770856.1 225005 D 907239 CDS YP_005770857.1 385221724 12350385 225341..226687 1 NC_017361.1 COG1066 Predicted ATP-dependent serine protease; DNA repair protein RadA 226687 12350385 HPSA_01130 Helicobacter pylori SouthAfrica7 DNA repair protein RadA YP_005770857.1 225341 D 907239 CDS YP_005770858.1 385221725 12350386 226959..228038 1 NC_017361.1 COG0225 Peptide methionine sulfoxide reductase; bifunctional methionine sulfoxide reductase A/B 228038 12350386 HPSA_01135 Helicobacter pylori SouthAfrica7 bifunctional methionine sulfoxide reductase A/B YP_005770858.1 226959 D 907239 CDS YP_005770859.1 385221726 12350387 complement(228035..228130) 1 NC_017361.1 hypothetical protein 228130 12350387 HPSA_01140 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770859.1 228035 R 907239 CDS YP_005770860.1 385221727 12350388 complement(228723..229556) 1 NC_017361.1 COG0730 Predicted permeases; hypothetical protein 229556 12350388 HPSA_01145 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770860.1 228723 R 907239 CDS YP_005770861.1 385221728 12350389 complement(229773..231854) 1 NC_017361.1 outer membrane protein 231854 12350389 HPSA_01150 Helicobacter pylori SouthAfrica7 outer membrane protein YP_005770861.1 229773 R 907239 CDS YP_005770862.1 385221729 12350390 232109..233266 1 NC_017361.1 COG0659 Sulfate permease and related transporters (MFS superfamily); putative sulfate permease 233266 12350390 HPSA_01155 Helicobacter pylori SouthAfrica7 putative sulfate permease YP_005770862.1 232109 D 907239 CDS YP_005770863.1 385221730 12350392 complement(233504..234955) 1 NC_017361.1 outer membrane protein (omp6) 234955 12350392 HPSA_01160 Helicobacter pylori SouthAfrica7 outer membrane protein (omp6) YP_005770863.1 233504 R 907239 CDS YP_005770864.1 385221731 12350393 complement(235148..235879) 1 NC_017361.1 COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase; 3-deoxy-manno-octulosonate cytidylyltransferase 235879 12350393 HPSA_01165 Helicobacter pylori SouthAfrica7 3-deoxy-manno-octulosonate cytidylyltransferase YP_005770864.1 235148 R 907239 CDS YP_005770865.1 385221732 12350394 235985..236776 1 NC_017361.1 COG1651 Protein-disulfide isomerase; hypothetical protein 236776 12350394 HPSA_01170 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770865.1 235985 D 907239 CDS YP_005770866.1 385221733 12350395 236792..237442 1 NC_017361.1 hypothetical protein 237442 12350395 HPSA_01175 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770866.1 236792 D 907239 CDS YP_005770867.1 385221734 12350396 237467..238639 1 NC_017361.1 COG0754 Glutathionylspermidine synthase; hypothetical protein 238639 12350396 HPSA_01180 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770867.1 237467 D 907239 CDS YP_005770868.1 385221735 12350397 238636..239157 1 NC_017361.1 integral membrane protein 239157 12350397 HPSA_01185 Helicobacter pylori SouthAfrica7 integral membrane protein YP_005770868.1 238636 D 907239 CDS YP_005770869.1 385221736 12350398 complement(239672..239785) 1 NC_017361.1 hypothetical protein 239785 12350398 HPSA_01190 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770869.1 239672 R 907239 CDS YP_005770870.1 385221737 12350399 complement(239782..240849) 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 240849 12350399 HPSA_01195 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770870.1 239782 R 907239 CDS YP_005770871.1 385221738 12350400 complement(240960..241328) 1 NC_017361.1 hypothetical protein 241328 12350400 HPSA_01200 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770871.1 240960 R 907239 CDS YP_005770872.1 385221739 12350401 complement(241328..242248) 1 NC_017361.1 COG0181 Porphobilinogen deaminase; porphobilinogen deaminase 242248 hemC 12350401 hemC Helicobacter pylori SouthAfrica7 porphobilinogen deaminase YP_005770872.1 241328 R 907239 CDS YP_005770873.1 385221740 12350402 complement(242258..243991) 1 NC_017361.1 COG0442 Prolyl-tRNA synthetase; prolyl-tRNA synthetase 243991 12350402 HPSA_01210 Helicobacter pylori SouthAfrica7 prolyl-tRNA synthetase YP_005770873.1 242258 R 907239 CDS YP_005770874.1 385221741 12350403 complement(243995..245338) 1 NC_017361.1 COG0373 Glutamyl-tRNA reductase; glutamyl-tRNA reductase 245338 hemA 12350403 hemA Helicobacter pylori SouthAfrica7 glutamyl-tRNA reductase YP_005770874.1 243995 R 907239 CDS YP_005770875.1 385221742 12350404 complement(245338..246261) 1 NC_017361.1 COG0142 Geranylgeranyl pyrophosphate synthase; putative octaprenyl-diphosphate synthase 246261 12350404 HPSA_01220 Helicobacter pylori SouthAfrica7 putative octaprenyl-diphosphate synthase YP_005770875.1 245338 R 907239 CDS YP_005770876.1 385221743 12350405 complement(246270..246665) 1 NC_017361.1 hypothetical protein 246665 12350405 HPSA_01225 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770876.1 246270 R 907239 CDS YP_005770877.1 385221744 12350406 complement(246658..246942) 1 NC_017361.1 hypothetical protein 246942 12350406 HPSA_01230 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770877.1 246658 R 907239 CDS YP_005770878.1 385221745 12350407 complement(246963..247397) 1 NC_017361.1 COG0783 DNA-binding ferritin-like protein (oxidative damage protectant); neutrophil activating protein 247397 12350407 HPSA_01235 Helicobacter pylori SouthAfrica7 neutrophil activating protein YP_005770878.1 246963 R 907239 CDS YP_005770879.1 385221746 12350408 complement(247619..248764) 1 NC_017361.1 COG0642 Signal transduction histidine kinase; putative histidine kinase sensor protein 248764 12350408 HPSA_01240 Helicobacter pylori SouthAfrica7 putative histidine kinase sensor protein YP_005770879.1 247619 R 907239 CDS YP_005770880.1 385221747 12350409 complement(248761..249078) 1 NC_017361.1 hypothetical protein 249078 12350409 HPSA_01245 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770880.1 248761 R 907239 CDS YP_005770881.1 385221748 12350410 complement(249075..250100) 1 NC_017361.1 COG1706 Flagellar basal-body P-ring protein; flagellar basal body P-ring protein 250100 flgI 12350410 flgI Helicobacter pylori SouthAfrica7 flagellar basal body P-ring protein YP_005770881.1 249075 R 907239 CDS YP_005770882.1 385221749 12350411 250270..251754 1 NC_017361.1 COG0513 Superfamily II DNA and RNA helicases; ATP-dependent RNA helicase 251754 12350411 HPSA_01255 Helicobacter pylori SouthAfrica7 ATP-dependent RNA helicase YP_005770882.1 250270 D 907239 CDS YP_005770883.1 385221750 12350412 251775..252869 1 NC_017361.1 COG0330 Membrane protease subunits, stomatin/prohibitin homologs; hypothetical protein 252869 12350412 HPSA_01260 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770883.1 251775 D 907239 CDS YP_005770884.1 385221751 12350413 252876..253415 1 NC_017361.1 hypothetical protein 253415 12350413 HPSA_01265 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770884.1 252876 D 907239 CDS YP_005770885.1 385221752 12350414 complement(253690..255240) 1 NC_017361.1 COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; oligopeptide permease ATPase protein 255240 12350414 HPSA_01270 Helicobacter pylori SouthAfrica7 oligopeptide permease ATPase protein YP_005770885.1 253690 R 907239 CDS YP_005770886.1 385221753 12350415 complement(255250..256266) 1 NC_017361.1 COG4239 ABC-type uncharacterized transport system, permease component; oligopeptide permease integral membrane protein 256266 12350415 HPSA_01275 Helicobacter pylori SouthAfrica7 oligopeptide permease integral membrane protein YP_005770886.1 255250 R 907239 CDS YP_005770887.1 385221754 12350417 256725..258179 1 NC_017361.1 Outer membrane protein HopF; putative signal peptide 258179 12350417 HPSA_01280 Helicobacter pylori SouthAfrica7 Outer membrane protein HopF; putative signal peptide YP_005770887.1 256725 D 907239 CDS YP_005770888.1 385221755 12350418 258192..259613 1 NC_017361.1 outer membrane protein HopG 259613 12350418 HPSA_01285 Helicobacter pylori SouthAfrica7 outer membrane protein HopG YP_005770888.1 258192 D 907239 CDS YP_005770889.1 385221756 12350419 259720..260955 1 NC_017361.1 COG0104 Adenylosuccinate synthase; adenylosuccinate synthetase 260955 12350419 HPSA_01290 Helicobacter pylori SouthAfrica7 adenylosuccinate synthetase YP_005770889.1 259720 D 907239 CDS YP_005770890.1 385221757 12350420 260952..261329 1 NC_017361.1 hypothetical protein 261329 12350420 HPSA_01295 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770890.1 260952 D 907239 CDS YP_005770891.1 385221758 12350421 261372..262046 1 NC_017361.1 COG3334 Uncharacterized conserved protein; hypothetical protein 262046 12350421 HPSA_01300 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770891.1 261372 D 907239 CDS YP_005770892.1 385221759 12350422 262046..263113 1 NC_017361.1 COG0750 Predicted membrane-associated Zn-dependent proteases 1; zinc metalloprotease 263113 12350422 HPSA_01305 Helicobacter pylori SouthAfrica7 zinc metalloprotease YP_005770892.1 262046 D 907239 CDS YP_005770893.1 385221760 12350423 263126..264388 1 NC_017361.1 COG1570 Exonuclease VII, large subunit; exodeoxyribonuclease VII large subunit 264388 xseA 12350423 xseA Helicobacter pylori SouthAfrica7 exodeoxyribonuclease VII large subunit YP_005770893.1 263126 D 907239 CDS YP_005770894.1 385221761 12350424 complement(264421..265584) 1 NC_017361.1 COG2189 Adenine specific DNA methylase Mod; TCGA site-specific m6A methyltransferase 265584 12350424 HPSA_01315 Helicobacter pylori SouthAfrica7 TCGA site-specific m6A methyltransferase YP_005770894.1 264421 R 907239 CDS YP_005770895.1 385221762 12350425 complement(265577..266191) 1 NC_017361.1 hypothetical protein 266191 12350425 HPSA_01320 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770895.1 265577 R 907239 CDS YP_005770896.1 385221763 12350426 266305..266820 1 NC_017361.1 hypothetical protein 266820 12350426 HPSA_01325 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770896.1 266305 D 907239 CDS YP_005770897.1 385221764 12350427 266828..266908 1 NC_017361.1 endonuclease MjaVIP 266908 12350427 HPSA_01330 Helicobacter pylori SouthAfrica7 endonuclease MjaVIP YP_005770897.1 266828 D 907239 CDS YP_005770898.1 385221765 12350428 266998..267756 1 NC_017361.1 COG0863 DNA modification methylase; type II DNA modification enzyme 267756 12350428 HPSA_01335 Helicobacter pylori SouthAfrica7 type II DNA modification enzyme YP_005770898.1 266998 D 907239 CDS YP_005770899.1 385221766 12350429 267830..270400 1 NC_017361.1 COG0542 ATPases with chaperone activity, ATP-binding subunit; ATP-dependent Clp protease, ATP-binding subunit ClpB 270400 12350429 HPSA_01340 Helicobacter pylori SouthAfrica7 ATP-dependent Clp protease, ATP-binding subunit ClpB YP_005770899.1 267830 D 907239 CDS YP_005770900.1 385221767 12350430 270455..271174 1 NC_017361.1 COG0785 Cytochrome c biogenesis protein; cytochrome c biogenesis protein 271174 12350430 HPSA_01345 Helicobacter pylori SouthAfrica7 cytochrome c biogenesis protein YP_005770900.1 270455 D 907239 CDS YP_005770901.1 385221768 12350431 271184..272317 1 NC_017361.1 COG0044 Dihydroorotase and related cyclic amidohydrolases; dihydroorotase 272317 12350431 HPSA_01350 Helicobacter pylori SouthAfrica7 dihydroorotase YP_005770901.1 271184 D 907239 CDS YP_005770902.1 385221769 12350432 272305..273531 1 NC_017361.1 COG0402 Cytosine deaminase and related metal-dependent hydrolases; chlorohydrolase 273531 12350432 HPSA_01355 Helicobacter pylori SouthAfrica7 chlorohydrolase YP_005770902.1 272305 D 907239 CDS YP_005770903.1 385221770 12350433 273786..274028 1 NC_017361.1 hypothetical protein 274028 12350433 HPSA_01360 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770903.1 273786 D 907239 CDS YP_005770904.1 385221771 12350434 274038..275354 1 NC_017361.1 COG0621 2-methylthioadenine synthetase; (dimethylallyl)adenosine tRNA methylthiotransferase 275354 12350434 HPSA_01365 Helicobacter pylori SouthAfrica7 (dimethylallyl)adenosine tRNA methylthiotransferase YP_005770904.1 274038 D 907239 CDS YP_005770905.1 385221772 12350435 275389..276036 1 NC_017361.1 COG2121 Uncharacterized protein conserved in bacteria; hypothetical protein 276036 12350435 HPSA_01370 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770905.1 275389 D 907239 CDS YP_005770906.1 385221773 12350436 276029..277012 1 NC_017361.1 hypothetical protein 277012 12350436 HPSA_01375 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770906.1 276029 D 907239 CDS YP_005770907.1 385221774 12350437 277002..277535 1 NC_017361.1 hypothetical protein 277535 12350437 HPSA_01380 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770907.1 277002 D 907239 CDS YP_005770908.1 385221775 12350438 277532..278071 1 NC_017361.1 hypothetical protein 278071 12350438 HPSA_01385 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770908.1 277532 D 907239 CDS YP_005770909.1 385221776 12350439 278088..278486 1 NC_017361.1 COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 278486 12350439 HPSA_01390 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770909.1 278088 D 907239 CDS YP_005770910.1 385221777 12350440 278523..279818 1 NC_017361.1 COG0457 FOG: TPR repeat; ATP-dependent nuclease 279818 12350440 HPSA_01395 Helicobacter pylori SouthAfrica7 ATP-dependent nuclease YP_005770910.1 278523 D 907239 CDS YP_005770911.1 385221778 12350441 279806..280363 1 NC_017361.1 COG0134 Indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase 280363 12350441 HPSA_01400 Helicobacter pylori SouthAfrica7 indole-3-glycerol phosphate synthase YP_005770911.1 279806 D 907239 CDS YP_005770912.1 385221779 12350442 280419..280670 1 NC_017361.1 COG1145 Ferredoxin; ferrodoxin 280670 12350442 HPSA_01405 Helicobacter pylori SouthAfrica7 ferrodoxin YP_005770912.1 280419 D 907239 CDS YP_005770913.1 385221780 12350443 280683..282137 1 NC_017361.1 COG0248 Exopolyphosphatase; guanosine pentaphosphate phosphohydrolase 282137 12350443 HPSA_01410 Helicobacter pylori SouthAfrica7 guanosine pentaphosphate phosphohydrolase YP_005770913.1 280683 D 907239 CDS YP_005770914.1 385221781 12350444 282134..283144 1 NC_017361.1 COG0859 ADP-heptose:LPS heptosyltransferase; lipopolysaccharide heptosyltransferase-1 283144 12350444 HPSA_01415 Helicobacter pylori SouthAfrica7 lipopolysaccharide heptosyltransferase-1 YP_005770914.1 282134 D 907239 CDS YP_005770915.1 385221782 12350445 283141..284127 1 NC_017361.1 COG1560 Lauroyl/myristoyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 284127 12350445 HPSA_01420 Helicobacter pylori SouthAfrica7 lipid A biosynthesis lauroyl acyltransferase YP_005770915.1 283141 D 907239 CDS YP_005770916.1 385221783 12350446 complement(284388..285503) 1 NC_017361.1 COG0343 Queuine/archaeosine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 285503 tgt 12350446 tgt Helicobacter pylori SouthAfrica7 queuine tRNA-ribosyltransferase YP_005770916.1 284388 R 907239 CDS YP_005770917.1 385221784 12350447 285560..286996 1 NC_017361.1 COG3400 Uncharacterized protein conserved in bacteria; hypothetical protein 286996 12350447 HPSA_01430 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770917.1 285560 D 907239 CDS YP_005770918.1 385221785 12350448 287001..288032 1 NC_017361.1 COG0337 3-dehydroquinate synthetase; 3-dehydroquinate synthase 288032 aroB 12350448 aroB Helicobacter pylori SouthAfrica7 3-dehydroquinate synthase YP_005770918.1 287001 D 907239 CDS YP_005770919.1 385221786 12350449 288023..289606 1 NC_017361.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 289606 12350449 HPSA_01440 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770919.1 288023 D 907239 CDS YP_005770920.1 385221787 12350450 289603..290859 1 NC_017361.1 COG0621 2-methylthioadenine synthetase; hypothetical protein 290859 12350450 HPSA_01445 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770920.1 289603 D 907239 CDS YP_005770921.1 385221788 12350451 290846..292498 1 NC_017361.1 COG0465 ATP-dependent Zn proteases; cell division protein FtsH3 292498 12350451 HPSA_01450 Helicobacter pylori SouthAfrica7 cell division protein FtsH3 YP_005770921.1 290846 D 907239 CDS YP_005770922.1 385221789 12350452 292501..293019 1 NC_017361.1 hypothetical protein 293019 12350452 HPSA_01455 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770922.1 292501 D 907239 CDS YP_005770923.1 385221790 12350453 293032..293505 1 NC_017361.1 hypothetical protein 293505 12350453 HPSA_01460 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770923.1 293032 D 907239 CDS YP_005770924.1 385221791 12350454 293557..302256 1 NC_017361.1 toxin-like outer membrane protein 302256 12350454 HPSA_01465 Helicobacter pylori SouthAfrica7 toxin-like outer membrane protein YP_005770924.1 293557 D 907239 CDS YP_005770925.1 385221792 12350455 302304..303521 1 NC_017361.1 COG0019 Diaminopimelate decarboxylase; diaminopimelate decarboxylase 303521 12350455 HPSA_01470 Helicobacter pylori SouthAfrica7 diaminopimelate decarboxylase YP_005770925.1 302304 D 907239 CDS YP_005770926.1 385221793 12350456 303526..303816 1 NC_017361.1 COG1605 Chorismate mutase; hypothetical protein 303816 12350456 HPSA_01475 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770926.1 303526 D 907239 CDS YP_005770927.1 385221794 12350457 304701..306386 1 NC_017361.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; para-aminobenzoate synthetase component I 306386 12350457 HPSA_01490 Helicobacter pylori SouthAfrica7 para-aminobenzoate synthetase component I YP_005770927.1 304701 D 907239 CDS YP_005770928.1 385221795 12350458 306573..307592 1 NC_017361.1 COG0388 Predicted amidohydrolase; acylamide amidohydrolase 307592 amiE 12350458 amiE Helicobacter pylori SouthAfrica7 acylamide amidohydrolase YP_005770928.1 306573 D 907239 CDS YP_005770929.1 385221796 12350459 complement(307716..310199) 1 NC_017361.1 COG1344 Flagellin and related hook-associated proteins; flagellar hook-associated protein FlgL 310199 flgL 12350459 flgL Helicobacter pylori SouthAfrica7 flagellar hook-associated protein FlgL YP_005770929.1 307716 R 907239 CDS YP_005770930.1 385221797 12350460 310262..310363 1 NC_017361.1 hypothetical protein 310363 12350460 HPSA_01505 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770930.1 310262 D 907239 CDS YP_005770931.1 385221798 12350461 310444..310758 1 NC_017361.1 COG0261 Ribosomal protein L21; 50S ribosomal protein L21 310758 rplU 12350461 rplU Helicobacter pylori SouthAfrica7 50S ribosomal protein L21 YP_005770931.1 310444 D 907239 CDS YP_005770932.1 385221799 12350462 310772..311038 1 NC_017361.1 COG0211 Ribosomal protein L27; 50S ribosomal protein L27 311038 rpmA 12350462 rpmA Helicobacter pylori SouthAfrica7 50S ribosomal protein L27 YP_005770932.1 310772 D 907239 CDS YP_005770933.1 385221800 12350463 311156..312805 1 NC_017361.1 COG0747 ABC-type dipeptide transport system, periplasmic component; periplasmic dipeptide-binding protein 312805 12350463 HPSA_01520 Helicobacter pylori SouthAfrica7 periplasmic dipeptide-binding protein YP_005770933.1 311156 D 907239 CDS YP_005770934.1 385221801 12350464 312816..313820 1 NC_017361.1 COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide permease protein 313820 12350464 HPSA_01525 Helicobacter pylori SouthAfrica7 dipeptide permease protein YP_005770934.1 312816 D 907239 CDS YP_005770935.1 385221802 12350465 313820..314677 1 NC_017361.1 COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components; dipeptide transport system permease 314677 12350465 HPSA_01530 Helicobacter pylori SouthAfrica7 dipeptide transport system permease YP_005770935.1 313820 D 907239 CDS YP_005770936.1 385221803 12350466 314688..315551 1 NC_017361.1 COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; ABC-type transport system, ATP-binding protein; putative dipeptide transporter protein 4 315551 12350466 HPSA_01535 Helicobacter pylori SouthAfrica7 ABC-type transport system, ATP-binding protein; putative dipeptide transporter protein 4 YP_005770936.1 314688 D 907239 CDS YP_005770937.1 385221804 12350467 315548..316354 1 NC_017361.1 COG4608 ABC-type oligopeptide transport system, ATPase component; dipeptide transport system ATP-binding protein 316354 12350467 HPSA_01540 Helicobacter pylori SouthAfrica7 dipeptide transport system ATP-binding protein YP_005770937.1 315548 D 907239 CDS YP_005770938.1 385221805 12350468 316373..317455 1 NC_017361.1 COG0536 Predicted GTPase; GTPase ObgE 317455 obgE 12350468 obgE Helicobacter pylori SouthAfrica7 GTPase ObgE YP_005770938.1 316373 D 907239 CDS YP_005770939.1 385221806 12350469 317620..318603 1 NC_017361.1 hypothetical protein 318603 12350469 HPSA_01550 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770939.1 317620 D 907239 CDS YP_005770940.1 385221807 12350470 318886..319440 1 NC_017361.1 hypothetical protein 319440 12350470 HPSA_01555 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770940.1 318886 D 907239 CDS YP_005770941.1 385221808 12350471 319449..320741 1 NC_017361.1 COG0001 Glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde aminotransferase 320741 12350471 HPSA_01560 Helicobacter pylori SouthAfrica7 glutamate-1-semialdehyde aminotransferase YP_005770941.1 319449 D 907239 CDS YP_005770942.1 385221809 12350472 320746..321006 1 NC_017361.1 hypothetical protein 321006 12350472 HPSA_01565 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770942.1 320746 D 907239 CDS YP_005770943.1 385221810 12350473 321019..321411 1 NC_017361.1 hypothetical protein 321411 12350473 HPSA_01570 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770943.1 321019 D 907239 CDS YP_005770944.1 385221811 12350474 321520..322404 1 NC_017361.1 COG0388 Predicted amidohydrolase; N-carbamoyl-D-amino acid amidohydrolase 322404 12350474 HPSA_01575 Helicobacter pylori SouthAfrica7 N-carbamoyl-D-amino acid amidohydrolase YP_005770944.1 321520 D 907239 CDS YP_005770945.1 385221812 12350475 322417..323298 1 NC_017361.1 COG0726 Predicted xylanase/chitin deacetylase; hypothetical protein 323298 12350475 HPSA_01580 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770945.1 322417 D 907239 CDS YP_005770946.1 385221813 12350476 323345..323698 1 NC_017361.1 hypothetical protein 323698 12350476 HPSA_01585 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770946.1 323345 D 907239 CDS YP_005770947.1 385221814 12350477 323698..324675 1 NC_017361.1 COG0523 Putative GTPases (G3E family); putative cobalamin synthesis protein 324675 12350477 HPSA_01590 Helicobacter pylori SouthAfrica7 putative cobalamin synthesis protein YP_005770947.1 323698 D 907239 CDS YP_005770948.1 385221815 12350478 complement(324834..325979) 1 NC_017361.1 COG0477 Permeases of the major facilitator superfamily; nitrite extrusion protein (narK) 325979 12350478 HPSA_01595 Helicobacter pylori SouthAfrica7 nitrite extrusion protein (narK) YP_005770948.1 324834 R 907239 CDS YP_005770949.1 385221816 12350479 326362..326463 1 NC_017361.1 hypothetical protein 326463 12350479 HPSA_01600 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770949.1 326362 D 907239 CDS YP_005770950.1 385221817 12350480 complement(327060..329123) 1 NC_017361.1 outer membrane protein HopD 329123 12350480 HPSA_01605 Helicobacter pylori SouthAfrica7 outer membrane protein HopD YP_005770950.1 327060 R 907239 CDS YP_005770951.1 385221818 12350481 329526..329663 1 NC_017361.1 hypothetical protein 329663 12350481 HPSA_01610 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770951.1 329526 D 907239 CDS YP_005770952.1 385221819 12350482 complement(329805..330560) 1 NC_017361.1 COG0748 Putative heme iron utilization protein; putative heme iron utilization protein 330560 12350482 HPSA_01615 Helicobacter pylori SouthAfrica7 putative heme iron utilization protein YP_005770952.1 329805 R 907239 CDS YP_005770953.1 385221820 12350483 complement(330621..332246) 1 NC_017361.1 COG0018 Arginyl-tRNA synthetase; arginyl-tRNA synthetase 332246 argS 12350483 argS Helicobacter pylori SouthAfrica7 arginyl-tRNA synthetase YP_005770953.1 330621 R 907239 CDS YP_005770954.1 385221821 12350484 complement(332249..332494) 1 NC_017361.1 COG1826 Sec-independent protein secretion pathway components; Sec-independent protein translocase protein tatA/E-like protein 332494 12350484 HPSA_01625 Helicobacter pylori SouthAfrica7 Sec-independent protein translocase protein tatA/E-like protein YP_005770954.1 332249 R 907239 CDS YP_005770955.1 385221822 12350485 complement(332565..333185) 1 NC_017361.1 COG0194 Guanylate kinase; guanylate kinase 333185 gmk 12350485 gmk Helicobacter pylori SouthAfrica7 guanylate kinase YP_005770955.1 332565 R 907239 CDS YP_005770956.1 385221823 12350486 complement(333178..334617) 1 NC_017361.1 hypothetical protein 334617 12350486 HPSA_01635 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770956.1 333178 R 907239 CDS YP_005770957.1 385221824 12350487 334760..335302 1 NC_017361.1 COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes; nuclease NucT 335302 12350487 HPSA_01640 Helicobacter pylori SouthAfrica7 nuclease NucT YP_005770957.1 334760 D 907239 CDS YP_005770958.1 385221825 12350488 complement(335356..336093) 1 NC_017361.1 Outer membrane protein HorC; putative signal peptide 336093 12350488 HPSA_01645 Helicobacter pylori SouthAfrica7 Outer membrane protein HorC; putative signal peptide YP_005770958.1 335356 R 907239 CDS YP_005770959.1 385221826 12350489 336224..336937 1 NC_017361.1 COG2063 Flagellar basal body L-ring protein; flagellar basal body L-ring protein 336937 flgH 12350489 flgH Helicobacter pylori SouthAfrica7 flagellar basal body L-ring protein YP_005770959.1 336224 D 907239 CDS YP_005770960.1 385221827 12350490 336958..337647 1 NC_017361.1 COG1083 CMP-N-acetylneuraminic acid synthetase; CMP-N-acetylneuraminic acid synthetase 337647 12350490 HPSA_01655 Helicobacter pylori SouthAfrica7 CMP-N-acetylneuraminic acid synthetase YP_005770960.1 336958 D 907239 CDS YP_005770961.1 385221828 12350491 337638..338504 1 NC_017361.1 COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase; CMP-N-acetylneuraminic acid synthetase protein 2 338504 12350491 HPSA_01660 Helicobacter pylori SouthAfrica7 CMP-N-acetylneuraminic acid synthetase protein 2 YP_005770961.1 337638 D 907239 CDS YP_005770962.1 385221829 12350492 338501..339043 1 NC_017361.1 COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins; putative flagellar biosynthesis protein 339043 12350492 HPSA_01665 Helicobacter pylori SouthAfrica7 putative flagellar biosynthesis protein YP_005770962.1 338501 D 907239 CDS YP_005770963.1 385221830 12350493 complement(338976..339914) 1 NC_017361.1 COG1663 Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase 339914 lpxK 12350493 lpxK Helicobacter pylori SouthAfrica7 tetraacyldisaccharide 4'-kinase YP_005770963.1 338976 R 907239 CDS YP_005770964.1 385221831 12350494 complement(339911..340693) 1 NC_017361.1 COG0171 NAD synthase; NAD synthetase 340693 12350494 HPSA_01675 Helicobacter pylori SouthAfrica7 NAD synthetase YP_005770964.1 339911 R 907239 CDS YP_005770965.1 385221832 12350496 340950..341942 1 NC_017361.1 COG0059 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 341942 12350496 HPSA_01685 Helicobacter pylori SouthAfrica7 ketol-acid reductoisomerase YP_005770965.1 340950 D 907239 CDS YP_005770966.1 385221833 12350497 341965..342771 1 NC_017361.1 COG2894 Septum formation inhibitor-activating ATPase; cell division inhibitor 342771 12350497 HPSA_01690 Helicobacter pylori SouthAfrica7 cell division inhibitor YP_005770966.1 341965 D 907239 CDS YP_005770967.1 385221834 12350498 342768..343001 1 NC_017361.1 COG0851 Septum formation topological specificity factor; cell division topological specificity factor MinE 343001 minE 12350498 minE Helicobacter pylori SouthAfrica7 cell division topological specificity factor MinE YP_005770967.1 342768 D 907239 CDS YP_005770968.1 385221835 12350499 343008..343808 1 NC_017361.1 COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; DNA processing protein DprA 343808 12350499 HPSA_01700 Helicobacter pylori SouthAfrica7 DNA processing protein DprA YP_005770968.1 343008 D 907239 CDS YP_005770969.1 385221836 12350500 343954..344208 1 NC_017361.1 COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis); Holliday junction resolvase-like protein 344208 12350500 HPSA_01705 Helicobacter pylori SouthAfrica7 Holliday junction resolvase-like protein YP_005770969.1 343954 D 907239 CDS YP_005770970.1 385221837 12350501 344514..345122 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 345122 12350501 HPSA_01710 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770970.1 344514 D 907239 CDS YP_005770971.1 385221838 12350502 345237..345575 1 NC_017361.1 hypothetical protein 345575 12350502 HPSA_01715 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770971.1 345237 D 907239 CDS YP_005770972.1 385221839 12350503 345559..346119 1 NC_017361.1 hypothetical protein 346119 12350503 HPSA_01720 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770972.1 345559 D 907239 CDS YP_005770973.1 385221840 12350504 complement(346205..347086) 1 NC_017361.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; putative ribosomal pseudouridine synthase 347086 12350504 HPSA_01725 Helicobacter pylori SouthAfrica7 putative ribosomal pseudouridine synthase YP_005770973.1 346205 R 907239 CDS YP_005770974.1 385221841 12350505 complement(347086..348636) 1 NC_017361.1 COG0608 Single-stranded DNA-specific exonuclease; ssDNA-specific exonuclease RecJ 348636 12350505 HPSA_01730 Helicobacter pylori SouthAfrica7 ssDNA-specific exonuclease RecJ YP_005770974.1 347086 R 907239 CDS YP_005770975.1 385221842 12350506 complement(348640..350256) 1 NC_017361.1 COG0504 CTP synthase (UTP-ammonia lyase); CTP synthetase 350256 pyrG 12350506 pyrG Helicobacter pylori SouthAfrica7 CTP synthetase YP_005770975.1 348640 R 907239 CDS YP_005770976.1 385221843 12350507 350514..351188 1 NC_017361.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 351188 12350507 HPSA_01740 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770976.1 350514 D 907239 CDS YP_005770977.1 385221844 12350508 351234..352937 1 NC_017361.1 COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar MS-ring protein 352937 fliF 12350508 fliF Helicobacter pylori SouthAfrica7 flagellar MS-ring protein YP_005770977.1 351234 D 907239 CDS YP_005770978.1 385221845 12350509 352956..353987 1 NC_017361.1 COG1536 Flagellar motor switch protein; flagellar motor switch protein G 353987 fliG 12350509 fliG Helicobacter pylori SouthAfrica7 flagellar motor switch protein G YP_005770978.1 352956 D 907239 CDS YP_005770979.1 385221846 12350510 353980..354750 1 NC_017361.1 COG1317 Flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein H 354750 fliH 12350510 fliH Helicobacter pylori SouthAfrica7 flagellar assembly protein H YP_005770979.1 353980 D 907239 CDS YP_005770980.1 385221847 12350511 354753..356603 1 NC_017361.1 COG1154 Deoxyxylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase 356603 12350511 HPSA_01760 Helicobacter pylori SouthAfrica7 1-deoxy-D-xylulose-5-phosphate synthase YP_005770980.1 354753 D 907239 CDS YP_005770981.1 385221848 12350512 356600..358414 1 NC_017361.1 COG0481 Membrane GTPase LepA; GTP-binding protein LepA 358414 12350512 HPSA_01765 Helicobacter pylori SouthAfrica7 GTP-binding protein LepA YP_005770981.1 356600 D 907239 CDS YP_005770982.1 385221849 12350513 358429..359187 1 NC_017361.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; hypothetical protein 359187 12350513 HPSA_01770 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770982.1 358429 D 907239 CDS YP_005770983.1 385221850 12350514 359286..359432 1 NC_017361.1 hypothetical protein 359432 12350514 HPSA_01775 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770983.1 359286 D 907239 CDS YP_005770984.1 385221851 12350515 complement(359458..359592) 1 NC_017361.1 hypothetical protein 359592 12350515 HPSA_01780 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770984.1 359458 R 907239 CDS YP_005770985.1 385221852 12350516 359629..359763 1 NC_017361.1 hypothetical protein 359763 12350516 HPSA_01785 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770985.1 359629 D 907239 CDS YP_005770986.1 385221853 12350517 complement(360220..361029) 1 NC_017361.1 COG4786 Flagellar basal body rod protein; flagellar basal-body rod protein 361029 12350517 HPSA_01790 Helicobacter pylori SouthAfrica7 flagellar basal-body rod protein YP_005770986.1 360220 R 907239 CDS YP_005770987.1 385221854 12350518 complement(361083..362363) 1 NC_017361.1 COG0477 Permeases of the major facilitator superfamily; General substrate transporter, MFS superfamily; putative alpha-ketoglutarate permease; putative membrane protein 362363 12350518 HPSA_01795 Helicobacter pylori SouthAfrica7 General substrate transporter, MFS superfamily; putative alpha-ketoglutarate permease; putative membrane protein YP_005770987.1 361083 R 907239 CDS YP_005770988.1 385221855 12350519 complement(362562..364304) 1 NC_017361.1 COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; 2',3'-cyclic-nucleotide 2'-phosphodiesterase 364304 12350519 HPSA_01800 Helicobacter pylori SouthAfrica7 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_005770988.1 362562 R 907239 CDS YP_005770989.1 385221856 12350520 complement(364458..367055) 1 NC_017361.1 COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins; septum formation protein 367055 12350520 HPSA_01805 Helicobacter pylori SouthAfrica7 septum formation protein YP_005770989.1 364458 R 907239 CDS YP_005770990.1 385221857 12350521 complement(367052..369388) 1 NC_017361.1 COG3893 Inactivated superfamily I helicase; hypothetical protein 369388 12350521 HPSA_01810 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770990.1 367052 R 907239 CDS YP_005770991.1 385221858 12350522 complement(369379..371310) 1 NC_017361.1 COG0021 Transketolase; transketolase 371310 12350522 HPSA_01815 Helicobacter pylori SouthAfrica7 transketolase YP_005770991.1 369379 R 907239 CDS YP_005770992.1 385221859 12350523 complement(371357..372199) 1 NC_017361.1 COG0196 FAD synthase; bifunctional riboflavin kinase/FMN adenylyltransferase 372199 12350523 HPSA_01820 Helicobacter pylori SouthAfrica7 bifunctional riboflavin kinase/FMN adenylyltransferase YP_005770992.1 371357 R 907239 CDS YP_005770993.1 385221860 12350524 complement(372165..372872) 1 NC_017361.1 COG1189 Predicted rRNA methylase; hemolysin 372872 12350524 HPSA_01825 Helicobacter pylori SouthAfrica7 hemolysin YP_005770993.1 372165 R 907239 CDS YP_005770994.1 385221861 12350525 complement(372872..373387) 1 NC_017361.1 hypothetical protein 373387 12350525 HPSA_01830 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770994.1 372872 R 907239 CDS YP_005770995.1 385221862 12350526 373454..374377 1 NC_017361.1 COG0540 Aspartate carbamoyltransferase, catalytic chain; aspartate carbamoyltransferase catalytic subunit 374377 pyrB 12350526 pyrB Helicobacter pylori SouthAfrica7 aspartate carbamoyltransferase catalytic subunit YP_005770995.1 373454 D 907239 CDS YP_005770996.1 385221863 12350527 374882..376321 1 NC_017361.1 outer membrane protein HofB 376321 12350527 HPSA_01840 Helicobacter pylori SouthAfrica7 outer membrane protein HofB YP_005770996.1 374882 D 907239 CDS YP_005770997.1 385221864 12350528 376412..378067 1 NC_017361.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; multidrug resistance protein (msbA) 378067 12350528 HPSA_01845 Helicobacter pylori SouthAfrica7 multidrug resistance protein (msbA) YP_005770997.1 376412 D 907239 CDS YP_005770998.1 385221865 12350529 378061..378678 1 NC_017361.1 hypothetical protein 378678 12350529 HPSA_01850 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005770998.1 378061 D 907239 CDS YP_005770999.1 385221866 12350530 378682..379251 1 NC_017361.1 COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes; Holliday junction resolvase and Mrr protein 379251 12350530 HPSA_01855 Helicobacter pylori SouthAfrica7 Holliday junction resolvase and Mrr protein YP_005770999.1 378682 D 907239 CDS YP_005771000.1 385221867 12350531 380510..381196 1 NC_017361.1 hypothetical protein 381196 12350531 HPSA_01870 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771000.1 380510 D 907239 CDS YP_005771001.1 385221868 12350532 381270..382265 1 NC_017361.1 COG3376 High-affinity nickel permease; high affinity nickel transport protein 382265 12350532 HPSA_01875 Helicobacter pylori SouthAfrica7 high affinity nickel transport protein YP_005771001.1 381270 D 907239 CDS YP_005771002.1 385221869 12350533 complement(382270..382791) 1 NC_017361.1 hypothetical protein 382791 12350533 HPSA_01880 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771002.1 382270 R 907239 CDS YP_005771003.1 385221870 12350534 382927..384243 1 NC_017361.1 hypothetical protein 384243 12350534 HPSA_01885 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771003.1 382927 D 907239 CDS YP_005771004.1 385221871 12350535 complement(384266..385078) 1 NC_017361.1 hypothetical protein 385078 12350535 HPSA_01890 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771004.1 384266 R 907239 CDS YP_005771005.1 385221872 12350536 complement(385253..385453) 1 NC_017361.1 COG2608 Copper chaperone; copper ion binding protein 385453 12350536 HPSA_01895 Helicobacter pylori SouthAfrica7 copper ion binding protein YP_005771005.1 385253 R 907239 CDS YP_005771006.1 385221873 12350537 complement(385454..387679) 1 NC_017361.1 COG2217 Cation transport ATPase; Copper-transporting ATPase/P-type transporting ATPase; putative membrane protein 387679 12350537 HPSA_01900 Helicobacter pylori SouthAfrica7 Copper-transporting ATPase/P-type transporting ATPase; putative membrane protein YP_005771006.1 385454 R 907239 CDS YP_005771007.1 385221874 12350538 complement(387676..388389) 1 NC_017361.1 COG1183 Phosphatidylserine synthase; CDP-diacylglycerol--serine O-phosphatidyltransferase (Phosphatidylserine synthase); putative membrane 388389 12350538 HPSA_01905 Helicobacter pylori SouthAfrica7 CDP-diacylglycerol--serine O-phosphatidyltransferase (Phosphatidylserine synthase); putative membrane YP_005771007.1 387676 R 907239 CDS YP_005771008.1 385221875 12350539 complement(388634..390532) 1 NC_017361.1 COG0465 ATP-dependent Zn proteases; cell division protein 390532 12350539 HPSA_01910 Helicobacter pylori SouthAfrica7 cell division protein YP_005771008.1 388634 R 907239 CDS YP_005771009.1 385221876 12350540 complement(390541..391542) 1 NC_017361.1 COG2264 Ribosomal protein L11 methylase; 50S ribosomal protein L11 methyltransferase 391542 prmA 12350540 prmA Helicobacter pylori SouthAfrica7 50S ribosomal protein L11 methyltransferase YP_005771009.1 390541 R 907239 CDS YP_005771010.1 385221877 12350541 complement(391543..391917) 1 NC_017361.1 COG0784 FOG: CheY-like receiver; response regulator 391917 12350541 HPSA_01920 Helicobacter pylori SouthAfrica7 response regulator YP_005771010.1 391543 R 907239 CDS YP_005771011.1 385221878 12350542 392202..392804 1 NC_017361.1 outer membrane protein HorD 392804 12350542 HPSA_01925 Helicobacter pylori SouthAfrica7 outer membrane protein HorD YP_005771011.1 392202 D 907239 CDS YP_005771012.1 385221879 12350544 complement(392936..393343) 1 NC_017361.1 hypothetical protein 393343 12350544 HPSA_01930 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771012.1 392936 R 907239 CDS YP_005771013.1 385221880 12350545 complement(393346..393588) 1 NC_017361.1 hypothetical protein 393588 12350545 HPSA_01935 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771013.1 393346 R 907239 CDS YP_005771014.1 385221881 12350546 complement(393582..394118) 1 NC_017361.1 COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; 16S rRNA methyltransferase GidB 394118 gidB 12350546 gidB Helicobacter pylori SouthAfrica7 16S rRNA methyltransferase GidB YP_005771014.1 393582 R 907239 CDS YP_005771015.1 385221882 12350547 complement(394115..395152) 1 NC_017361.1 COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase); S-adenosylmethionine--tRNA ribosyltransferase-isomerase 395152 queA 12350547 queA Helicobacter pylori SouthAfrica7 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_005771015.1 394115 R 907239 CDS YP_005771016.1 385221883 12350548 complement(395153..395890) 1 NC_017361.1 COG0805 Sec-independent protein secretion pathway component TatC; twin arginine-targeting protein translocase TatC 395890 12350548 HPSA_01950 Helicobacter pylori SouthAfrica7 twin arginine-targeting protein translocase TatC YP_005771016.1 395153 R 907239 CDS YP_005771017.1 385221884 12350549 complement(395883..396380) 1 NC_017361.1 COG1826 Sec-independent protein secretion pathway components; sec-independent translocase 396380 12350549 HPSA_01955 Helicobacter pylori SouthAfrica7 sec-independent translocase YP_005771017.1 395883 R 907239 CDS YP_005771018.1 385221885 12350550 complement(396509..397519) 1 NC_017361.1 COG2255 Holliday junction resolvasome, helicase subunit; Holliday junction DNA helicase RuvB 397519 ruvB 12350550 ruvB Helicobacter pylori SouthAfrica7 Holliday junction DNA helicase RuvB YP_005771018.1 396509 R 907239 CDS YP_005771019.1 385221886 12350551 complement(397519..398331) 1 NC_017361.1 COG0413 Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 398331 panB 12350551 panB Helicobacter pylori SouthAfrica7 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_005771019.1 397519 R 907239 CDS YP_005771020.1 385221887 12350552 398478..399200 1 NC_017361.1 hypothetical protein 399200 12350552 HPSA_01970 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771020.1 398478 D 907239 CDS YP_005771021.1 385221888 12350553 399190..400029 1 NC_017361.1 hypothetical protein 400029 12350553 HPSA_01975 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771021.1 399190 D 907239 CDS YP_005771022.1 385221889 12350554 400041..400982 1 NC_017361.1 hypothetical protein 400982 12350554 HPSA_01980 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771022.1 400041 D 907239 CDS YP_005771023.1 385221890 12350555 400992..402314 1 NC_017361.1 COG0739 Membrane proteins related to metalloendopeptidases; metalloendopeptidase related membrane protein 402314 12350555 HPSA_01985 Helicobacter pylori SouthAfrica7 metalloendopeptidase related membrane protein YP_005771023.1 400992 D 907239 CDS YP_005771024.1 385221891 12350556 402317..402904 1 NC_017361.1 COG0850 Septum formation inhibitor; septum formation inhibitor 402904 minC 12350556 minC Helicobacter pylori SouthAfrica7 septum formation inhibitor YP_005771024.1 402317 D 907239 CDS YP_005771025.1 385221892 12350557 402901..403788 1 NC_017361.1 COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 403788 lpxC 12350557 lpxC Helicobacter pylori SouthAfrica7 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_005771025.1 402901 D 907239 CDS YP_005771026.1 385221893 12350558 403810..404289 1 NC_017361.1 COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone; hypothetical protein 404289 12350558 HPSA_02000 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771026.1 403810 D 907239 CDS YP_005771027.1 385221894 12350559 404344..405225 1 NC_017361.1 COG0083 Homoserine kinase; homoserine kinase 405225 12350559 HPSA_02005 Helicobacter pylori SouthAfrica7 homoserine kinase YP_005771027.1 404344 D 907239 CDS YP_005771028.1 385221895 12350560 405212..405466 1 NC_017361.1 COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 405466 12350560 HPSA_02010 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771028.1 405212 D 907239 CDS YP_005771029.1 385221896 12350561 405463..408324 1 NC_017361.1 COG0532 Translation initiation factor 2 (IF-2; GTPase); translation initiation factor IF-2 408324 infB 12350561 infB Helicobacter pylori SouthAfrica7 translation initiation factor IF-2 YP_005771029.1 405463 D 907239 CDS YP_005771030.1 385221897 12350562 408324..408659 1 NC_017361.1 COG0858 Ribosome-binding factor A; ribosome-binding factor A 408659 rbfA 12350562 rbfA Helicobacter pylori SouthAfrica7 ribosome-binding factor A YP_005771030.1 408324 D 907239 CDS YP_005771031.1 385221898 12350563 408652..409092 1 NC_017361.1 COG0779 Uncharacterized protein conserved in bacteria; Ribosome maturation factor rimP 409092 12350563 HPSA_02025 Helicobacter pylori SouthAfrica7 Ribosome maturation factor rimP YP_005771031.1 408652 D 907239 CDS YP_005771032.1 385221899 12350564 409245..410357 1 NC_017361.1 COG1408 Predicted phosphohydrolases; hypothetical protein 410357 12350564 HPSA_02030 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771032.1 409245 D 907239 CDS YP_005771033.1 385221900 12350565 410710..411381 1 NC_017361.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; OmpR family two-component system response regulator 411381 12350565 HPSA_02035 Helicobacter pylori SouthAfrica7 OmpR family two-component system response regulator YP_005771033.1 410710 D 907239 CDS YP_005771034.1 385221901 12350566 complement(411834..412877) 1 NC_017361.1 COG2404 Predicted phosphohydrolase (DHH superfamily); hypothetical protein 412877 12350566 HPSA_02040 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771034.1 411834 R 907239 CDS YP_005771035.1 385221902 12350567 complement(412896..415097) 1 NC_017361.1 COG1298 Flagellar biosynthesis pathway, component FlhA; flagellar biosynthesis protein FlhA 415097 flhA 12350567 flhA Helicobacter pylori SouthAfrica7 flagellar biosynthesis protein FlhA YP_005771035.1 412896 R 907239 CDS YP_005771036.1 385221903 12350568 415242..415514 1 NC_017361.1 COG0184 Ribosomal protein S15P/S13E; 30S ribosomal protein S15 415514 rpsO 12350568 rpsO Helicobacter pylori SouthAfrica7 30S ribosomal protein S15 YP_005771036.1 415242 D 907239 CDS YP_005771037.1 385221904 12350569 complement(415706..415828) 1 NC_017361.1 hypothetical protein 415828 12350569 HPSA_02060 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771037.1 415706 R 907239 CDS YP_005771038.1 385221905 12350570 416979..417482 1 NC_017361.1 COG0757 3-dehydroquinate dehydratase II; 3-dehydroquinate dehydratase 417482 12350570 HPSA_02070 Helicobacter pylori SouthAfrica7 3-dehydroquinate dehydratase YP_005771038.1 416979 D 907239 CDS YP_005771039.1 385221906 12350571 417494..418567 1 NC_017361.1 COG0006 Xaa-Pro aminopeptidase; X-Pro aminopeptidase 418567 12350571 HPSA_02075 Helicobacter pylori SouthAfrica7 X-Pro aminopeptidase YP_005771039.1 417494 D 907239 CDS YP_005771040.1 385221907 12350572 418564..419055 1 NC_017361.1 COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 419055 12350572 HPSA_02080 Helicobacter pylori SouthAfrica7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_005771040.1 418564 D 907239 CDS YP_005771041.1 385221908 12350573 419052..420425 1 NC_017361.1 COG1419 Flagellar GTP-binding protein; flagellar biosynthesis regulator FlhF 420425 flhF 12350573 flhF Helicobacter pylori SouthAfrica7 flagellar biosynthesis regulator FlhF YP_005771041.1 419052 D 907239 CDS YP_005771042.1 385221909 12350574 420422..421306 1 NC_017361.1 COG0455 ATPases involved in chromosome partitioning; hypothetical protein 421306 12350574 HPSA_02090 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771042.1 420422 D 907239 CDS YP_005771043.1 385221910 12350575 421603..422370 1 NC_017361.1 COG1191 DNA-directed RNA polymerase specialized sigma subunit; flagellar biosynthesis sigma factor 422370 fliA 12350575 fliA Helicobacter pylori SouthAfrica7 flagellar biosynthesis sigma factor YP_005771043.1 421603 D 907239 CDS YP_005771044.1 385221911 12350576 422363..423427 1 NC_017361.1 COG1868 Flagellar motor switch protein; flagellar motor switch protein FliM 423427 fliM 12350576 fliM Helicobacter pylori SouthAfrica7 flagellar motor switch protein FliM YP_005771044.1 422363 D 907239 CDS YP_005771045.1 385221912 12350577 423432..424280 1 NC_017361.1 COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation; flagellar motor switch protein FliY 424280 12350577 HPSA_02105 Helicobacter pylori SouthAfrica7 flagellar motor switch protein FliY YP_005771045.1 423432 D 907239 CDS YP_005771046.1 385221913 12350578 424311..424847 1 NC_017361.1 COG2731 Beta-galactosidase, beta subunit; hypothetical protein 424847 12350578 HPSA_02110 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771046.1 424311 D 907239 CDS YP_005771047.1 385221914 12350579 424844..425347 1 NC_017361.1 COG4731 Uncharacterized protein conserved in bacteria; hypothetical protein 425347 12350579 HPSA_02115 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771047.1 424844 D 907239 CDS YP_005771048.1 385221915 12350580 complement(425370..425822) 1 NC_017361.1 COG0735 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulation protein 425822 12350580 HPSA_02120 Helicobacter pylori SouthAfrica7 ferric uptake regulation protein YP_005771048.1 425370 R 907239 CDS YP_005771049.1 385221916 12350581 complement(425984..427159) 1 NC_017361.1 COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase; recombination factor protein RarA 427159 12350581 HPSA_02125 Helicobacter pylori SouthAfrica7 recombination factor protein RarA YP_005771049.1 425984 R 907239 CDS YP_005771050.1 385221917 12350582 complement(427156..427527) 1 NC_017361.1 COG0789 Predicted transcriptional regulators; heat shock transcriptional regulator 427527 12350582 HPSA_02130 Helicobacter pylori SouthAfrica7 heat shock transcriptional regulator YP_005771050.1 427156 R 907239 CDS YP_005771051.1 385221918 12350583 complement(427537..428403) 1 NC_017361.1 COG2214 DnaJ-class molecular chaperone; co-chaperone-curved DNA binding protein A 428403 12350583 HPSA_02135 Helicobacter pylori SouthAfrica7 co-chaperone-curved DNA binding protein A YP_005771051.1 427537 R 907239 CDS YP_005771052.1 385221919 12350584 428570..429820 1 NC_017361.1 hypothetical protein 429820 12350584 HPSA_02140 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771052.1 428570 D 907239 CDS YP_005771053.1 385221920 12350585 complement(430064..430870) 1 NC_017361.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); hypothetical protein 430870 12350585 HPSA_02145 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771053.1 430064 R 907239 CDS YP_005771054.1 385221921 12350586 complement(431171..432067) 1 NC_017361.1 COG0784 FOG: CheY-like receiver; response regulator 432067 12350586 HPSA_02150 Helicobacter pylori SouthAfrica7 response regulator YP_005771054.1 431171 R 907239 CDS YP_005771055.1 385221922 12350587 complement(432088..433308) 1 NC_017361.1 COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 433308 ispDF 12350587 ispDF Helicobacter pylori SouthAfrica7 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_005771055.1 432088 R 907239 CDS YP_005771056.1 385221923 12350588 complement(433332..434762) 1 NC_017361.1 COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; putative serine protease, peptidase S1C HrtA/DegP2/Q/S family; putative signal peptide 434762 12350588 HPSA_02160 Helicobacter pylori SouthAfrica7 putative serine protease, peptidase S1C HrtA/DegP2/Q/S family; putative signal peptide YP_005771056.1 433332 R 907239 CDS YP_005771057.1 385221924 12350589 complement(434807..436234) 1 NC_017361.1 COG0833 Amino acid transporters; amino acid permease 436234 12350589 HPSA_02165 Helicobacter pylori SouthAfrica7 amino acid permease YP_005771057.1 434807 R 907239 CDS YP_005771058.1 385221925 12350590 complement(436501..437040) 1 NC_017361.1 COG0558 Phosphatidylglycerophosphate synthase; phosphatidylglycerophosphate synthase 437040 12350590 HPSA_02170 Helicobacter pylori SouthAfrica7 phosphatidylglycerophosphate synthase YP_005771058.1 436501 R 907239 CDS YP_005771059.1 385221926 12350591 complement(437037..437645) 1 NC_017361.1 hypothetical protein 437645 12350591 HPSA_02175 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771059.1 437037 R 907239 CDS YP_005771060.1 385221927 12350592 complement(437655..438443) 1 NC_017361.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 7-alpha-hydroxysteroid dehydrogenase 438443 12350592 HPSA_02180 Helicobacter pylori SouthAfrica7 7-alpha-hydroxysteroid dehydrogenase YP_005771060.1 437655 R 907239 CDS YP_005771061.1 385221928 12350593 complement(438440..439342) 1 NC_017361.1 COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; dihydrodipicolinate synthase 439342 12350593 HPSA_02185 Helicobacter pylori SouthAfrica7 dihydrodipicolinate synthase YP_005771061.1 438440 R 907239 CDS YP_005771062.1 385221929 12350594 complement(439357..440691) 1 NC_017361.1 COG0612 Predicted Zn-dependent peptidases; putative zinc protease 440691 12350594 HPSA_02190 Helicobacter pylori SouthAfrica7 putative zinc protease YP_005771062.1 439357 R 907239 CDS YP_005771063.1 385221930 12350595 complement(440688..441743) 1 NC_017361.1 COG0167 Dihydroorotate dehydrogenase; dihydroorotate dehydrogenase 2 441743 12350595 HPSA_02195 Helicobacter pylori SouthAfrica7 dihydroorotate dehydrogenase 2 YP_005771063.1 440688 R 907239 CDS YP_005771064.1 385221931 12350596 complement(441788..443815) 1 NC_017361.1 COG0855 Polyphosphate kinase; polyphosphate kinase 443815 12350596 HPSA_02200 Helicobacter pylori SouthAfrica7 polyphosphate kinase YP_005771064.1 441788 R 907239 CDS YP_005771065.1 385221932 12350598 complement(444030..445157) 1 NC_017361.1 COG0732 Restriction endonuclease S subunits; type I restriction enzyme S protein 445157 12350598 HPSA_02205 Helicobacter pylori SouthAfrica7 type I restriction enzyme S protein YP_005771065.1 444030 R 907239 CDS YP_005771066.1 385221933 12350599 complement(446775..449096) 1 NC_017361.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein (hsdR) 449096 12350599 HPSA_02220 Helicobacter pylori SouthAfrica7 type I restriction enzyme R protein (hsdR) YP_005771066.1 446775 R 907239 CDS YP_005771067.1 385221934 12350600 complement(449323..449955) 1 NC_017361.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; type I restriction enzyme R protein (hsdR) 449955 12350600 HPSA_02225 Helicobacter pylori SouthAfrica7 type I restriction enzyme R protein (hsdR) YP_005771067.1 449323 R 907239 CDS YP_005771068.1 385221935 12350601 complement(450024..451898) 1 NC_017361.1 COG2604 Uncharacterized protein conserved in bacteria; hypothetical protein 451898 12350601 HPSA_02230 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771068.1 450024 R 907239 CDS YP_005771069.1 385221936 12350602 complement(451924..452691) 1 NC_017361.1 hypothetical protein 452691 12350602 HPSA_02235 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771069.1 451924 R 907239 CDS YP_005771070.1 385221937 12350603 complement(452701..453015) 1 NC_017361.1 hypothetical protein 453015 12350603 HPSA_02240 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771070.1 452701 R 907239 CDS YP_005771071.1 385221938 12350604 complement(453017..454504) 1 NC_017361.1 COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; hypothetical protein 454504 12350604 HPSA_02245 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771071.1 453017 R 907239 CDS YP_005771072.1 385221939 12350605 complement(454516..455004) 1 NC_017361.1 hypothetical protein 455004 12350605 HPSA_02250 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771072.1 454516 R 907239 CDS YP_005771073.1 385221940 12350606 complement(454989..456725) 1 NC_017361.1 COG1164 Oligoendopeptidase F; oligoendopeptidase F 456725 12350606 HPSA_02255 Helicobacter pylori SouthAfrica7 oligoendopeptidase F YP_005771073.1 454989 R 907239 CDS YP_005771074.1 385221941 12350607 complement(456816..458066) 1 NC_017361.1 COG0475 Kef-type K+ transport systems, membrane components; glutathione-regulated potassium-efflux system protein (kefB) 458066 12350607 HPSA_02260 Helicobacter pylori SouthAfrica7 glutathione-regulated potassium-efflux system protein (kefB) YP_005771074.1 456816 R 907239 CDS YP_005771075.1 385221942 12350608 complement(458402..458962) 1 NC_017361.1 Outer membrane protein HorE; putative signal peptide 458962 12350608 HPSA_02265 Helicobacter pylori SouthAfrica7 Outer membrane protein HorE; putative signal peptide YP_005771075.1 458402 R 907239 CDS YP_005771076.1 385221943 12350609 459394..460134 1 NC_017361.1 COG0725 ABC-type molybdate transport system, periplasmic component; molybdenum ABC transporter ModA 460134 12350609 HPSA_02270 Helicobacter pylori SouthAfrica7 molybdenum ABC transporter ModA YP_005771076.1 459394 D 907239 CDS YP_005771077.1 385221944 12350610 460156..460830 1 NC_017361.1 COG4149 ABC-type molybdate transport system, permease component; molybdenum ABC transporter ModB 460830 12350610 HPSA_02275 Helicobacter pylori SouthAfrica7 molybdenum ABC transporter ModB YP_005771077.1 460156 D 907239 CDS YP_005771078.1 385221945 12350611 460827..461624 1 NC_017361.1 COG1118 ABC-type sulfate/molybdate transport systems, ATPase component; molybdate transport system ATP-binding protein 461624 12350611 HPSA_02280 Helicobacter pylori SouthAfrica7 molybdate transport system ATP-binding protein YP_005771078.1 460827 D 907239 CDS YP_005771079.1 385221946 12350612 complement(461871..463262) 1 NC_017361.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamyl-tRNA synthetase 463262 gltX 12350612 gltX Helicobacter pylori SouthAfrica7 glutamyl-tRNA synthetase YP_005771079.1 461871 R 907239 CDS YP_005771080.1 385221947 12350613 463381..464496 1 NC_017361.1 hypothetical protein 464496 12350613 HPSA_02290 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771080.1 463381 D 907239 CDS YP_005771081.1 385221948 12350614 464505..466142 1 NC_017361.1 COG0286 Type I restriction-modification system methyltransferase subunit; type II adenine specific methyltransferase 466142 12350614 HPSA_02295 Helicobacter pylori SouthAfrica7 type II adenine specific methyltransferase YP_005771081.1 464505 D 907239 CDS YP_005771082.1 385221949 12350615 466108..466956 1 NC_017361.1 COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein 466956 12350615 HPSA_02300 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771082.1 466108 D 907239 CDS YP_005771083.1 385221950 12350616 467002..468801 1 NC_017361.1 COG1217 Predicted membrane GTPase involved in stress response; GTP-binding elongation factor protein, TypA subfamily 468801 12350616 HPSA_02305 Helicobacter pylori SouthAfrica7 GTP-binding elongation factor protein, TypA subfamily YP_005771083.1 467002 D 907239 CDS YP_005771084.1 385221951 12350617 469185..470510 1 NC_017361.1 COG0477 Permeases of the major facilitator superfamily; proline/betaine transporter 470510 12350617 HPSA_02310 Helicobacter pylori SouthAfrica7 proline/betaine transporter YP_005771084.1 469185 D 907239 CDS YP_005771085.1 385221952 12350618 470507..470767 1 NC_017361.1 COG1217 Predicted membrane GTPase involved in stress response; GTP-binding protein 470767 12350618 HPSA_02315 Helicobacter pylori SouthAfrica7 GTP-binding protein YP_005771085.1 470507 D 907239 CDS YP_005771086.1 385221953 12350619 470769..471815 1 NC_017361.1 COG0270 Site-specific DNA methylase; type II DNA modification (methyltransferase) 471815 12350619 HPSA_02320 Helicobacter pylori SouthAfrica7 type II DNA modification (methyltransferase) YP_005771086.1 470769 D 907239 CDS YP_005771087.1 385221954 12350620 472706..472831 1 NC_017361.1 hypothetical protein 472831 12350620 HPSA_02335 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771087.1 472706 D 907239 CDS YP_005771088.1 385221955 12350621 complement(472815..473759) 1 NC_017361.1 COG0753 Catalase; catalase-like protein 473759 12350621 HPSA_02340 Helicobacter pylori SouthAfrica7 catalase-like protein YP_005771088.1 472815 R 907239 CDS YP_005771089.1 385221956 12350622 474104..475690 1 NC_017361.1 Outer membrane protein HofC; putative signal peptide 475690 12350622 HPSA_02345 Helicobacter pylori SouthAfrica7 Outer membrane protein HofC; putative signal peptide YP_005771089.1 474104 D 907239 CDS YP_005771090.1 385221957 12350623 475760..477157 1 NC_017361.1 hypothetical protein 477157 12350623 HPSA_02350 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771090.1 475760 D 907239 CDS YP_005771091.1 385221958 12350624 477315..480407 1 NC_017361.1 hypothetical protein 480407 12350624 HPSA_02355 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771091.1 477315 D 907239 CDS YP_005771092.1 385221959 12350625 480420..481394 1 NC_017361.1 hypothetical protein 481394 12350625 HPSA_02360 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771092.1 480420 D 907239 CDS YP_005771093.1 385221960 12350626 complement(481513..482649) 1 NC_017361.1 COG1226 Kef-type K+ transport systems, predicted NAD-binding component; putative potassium channel protein 482649 12350626 HPSA_02365 Helicobacter pylori SouthAfrica7 putative potassium channel protein YP_005771093.1 481513 R 907239 CDS YP_005771094.1 385221961 12350627 complement(482843..483031) 1 NC_017361.1 COG0227 Ribosomal protein L28; 50S ribosomal protein L28 483031 rpmB 12350627 rpmB Helicobacter pylori SouthAfrica7 50S ribosomal protein L28 YP_005771094.1 482843 R 907239 CDS YP_005771095.1 385221962 12350628 complement(483131..483985) 1 NC_017361.1 putative HpaA-like protein 483985 12350628 HPSA_02375 Helicobacter pylori SouthAfrica7 putative HpaA-like protein YP_005771095.1 483131 R 907239 CDS YP_005771096.1 385221963 12350629 484123..485184 1 NC_017361.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase 485184 mraY 12350629 mraY Helicobacter pylori SouthAfrica7 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_005771096.1 484123 D 907239 CDS YP_005771097.1 385221964 12350630 485185..486453 1 NC_017361.1 COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 486453 murD 12350630 murD Helicobacter pylori SouthAfrica7 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_005771097.1 485185 D 907239 CDS YP_005771098.1 385221965 12350631 complement(486465..486725) 1 NC_017361.1 hypothetical protein 486725 12350631 HPSA_02390 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771098.1 486465 R 907239 CDS YP_005771099.1 385221966 12350632 complement(486715..487116) 1 NC_017361.1 COG0824 Predicted thioesterase; hypothetical protein 487116 12350632 HPSA_02395 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771099.1 486715 R 907239 CDS YP_005771100.1 385221967 12350633 487347..488672 1 NC_017361.1 COG0733 Na+-dependent transporters of the SNF family; sodium- and chloride-dependent transporter 488672 12350633 HPSA_02400 Helicobacter pylori SouthAfrica7 sodium- and chloride-dependent transporter YP_005771100.1 487347 D 907239 CDS YP_005771101.1 385221968 12350634 488686..490014 1 NC_017361.1 COG0733 Na+-dependent transporters of the SNF family; hypothetical protein 490014 12350634 HPSA_02405 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771101.1 488686 D 907239 CDS YP_005771102.1 385221969 12350635 490029..491099 1 NC_017361.1 COG2829 Outer membrane phospholipase A; phospholipase A1 491099 12350635 HPSA_02410 Helicobacter pylori SouthAfrica7 phospholipase A1 YP_005771102.1 490029 D 907239 CDS YP_005771103.1 385221970 12350636 491155..492279 1 NC_017361.1 COG0592 DNA polymerase sliding clamp subunit (PCNA homolog); DNA polymerase III subunit beta 492279 12350636 HPSA_02415 Helicobacter pylori SouthAfrica7 DNA polymerase III subunit beta YP_005771103.1 491155 D 907239 CDS YP_005771104.1 385221971 12350637 492291..494612 1 NC_017361.1 COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; DNA gyrase subunit B 494612 gyrB 12350637 gyrB Helicobacter pylori SouthAfrica7 DNA gyrase subunit B YP_005771104.1 492291 D 907239 CDS YP_005771105.1 385221972 12350638 494657..495649 1 NC_017361.1 hypothetical protein 495649 12350638 HPSA_02425 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771105.1 494657 D 907239 CDS YP_005771106.1 385221973 12350639 496600..497817 1 NC_017361.1 COG0739 Membrane proteins related to metalloendopeptidases; putative outer membrane protein 497817 12350639 HPSA_02440 Helicobacter pylori SouthAfrica7 putative outer membrane protein YP_005771106.1 496600 D 907239 CDS YP_005771107.1 385221974 12350640 497817..498464 1 NC_017361.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; hypothetical protein 498464 12350640 HPSA_02445 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771107.1 497817 D 907239 CDS YP_005771108.1 385221975 12350641 498475..499836 1 NC_017361.1 hypothetical protein 499836 12350641 HPSA_02450 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771108.1 498475 D 907239 CDS YP_005771109.1 385221976 12350642 499840..501219 1 NC_017361.1 COG0277 FAD/FMN-containing dehydrogenases; glycolate oxidase subunit GlcD 501219 12350642 HPSA_02455 Helicobacter pylori SouthAfrica7 glycolate oxidase subunit GlcD YP_005771109.1 499840 D 907239 CDS YP_005771110.1 385221977 12350643 501242..502006 1 NC_017361.1 COG0289 Dihydrodipicolinate reductase; dihydrodipicolinate reductase 502006 12350643 HPSA_02460 Helicobacter pylori SouthAfrica7 dihydrodipicolinate reductase YP_005771110.1 501242 D 907239 CDS YP_005771111.1 385221978 12350644 complement(502638..505289) 1 NC_017361.1 COG1112 Superfamily I DNA and RNA helicases and helicase subunits; AAA ATPase 505289 12350644 HPSA_02465 Helicobacter pylori SouthAfrica7 AAA ATPase YP_005771111.1 502638 R 907239 CDS YP_005771112.1 385221979 12350645 complement(505433..506017) 1 NC_017361.1 hypothetical protein 506017 12350645 HPSA_02470 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771112.1 505433 R 907239 CDS YP_005771113.1 385221980 12350646 complement(506017..506304) 1 NC_017361.1 hypothetical protein 506304 12350646 HPSA_02475 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771113.1 506017 R 907239 CDS YP_005771114.1 385221981 12350647 complement(506499..507032) 1 NC_017361.1 hypothetical protein 507032 12350647 HPSA_02480 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771114.1 506499 R 907239 CDS YP_005771115.1 385221982 12350648 complement(507029..507703) 1 NC_017361.1 hypothetical protein 507703 12350648 HPSA_02485 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771115.1 507029 R 907239 CDS YP_005771116.1 385221983 12350649 complement(507883..508875) 1 NC_017361.1 COG3034 Uncharacterized protein conserved in bacteria; hypothetical protein 508875 12350649 HPSA_02490 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771116.1 507883 R 907239 CDS YP_005771117.1 385221984 12350650 complement(508872..509777) 1 NC_017361.1 COG1159 GTPase; GTP-binding protein Era 509777 era 12350650 era Helicobacter pylori SouthAfrica7 GTP-binding protein Era YP_005771117.1 508872 R 907239 CDS YP_005771118.1 385221985 12350651 complement(509777..511108) 1 NC_017361.1 COG1220 ATP-dependent protease HslVU (ClpYQ), ATPase subunit; ATP-dependent protease ATP-binding subunit HslU 511108 hslU 12350651 hslU Helicobacter pylori SouthAfrica7 ATP-dependent protease ATP-binding subunit HslU YP_005771118.1 509777 R 907239 CDS YP_005771119.1 385221986 12350652 complement(511108..511650) 1 NC_017361.1 COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit; ATP-dependent protease peptidase subunit 511650 12350652 HPSA_02505 Helicobacter pylori SouthAfrica7 ATP-dependent protease peptidase subunit YP_005771119.1 511108 R 907239 CDS YP_005771120.1 385221987 12350653 complement(511654..512103) 1 NC_017361.1 COG0359 Ribosomal protein L9; 50S ribosomal protein L9 512103 rplI 12350653 rplI Helicobacter pylori SouthAfrica7 50S ribosomal protein L9 YP_005771120.1 511654 R 907239 CDS YP_005771121.1 385221988 12350654 514357..515802 1 NC_017361.1 COG0174 Glutamine synthetase; glutamine synthetase 515802 12350654 HPSA_02525 Helicobacter pylori SouthAfrica7 glutamine synthetase YP_005771121.1 514357 D 907239 CDS YP_005771122.1 385221989 12350655 complement(516030..516854) 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 516854 12350655 HPSA_02530 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771122.1 516030 R 907239 CDS YP_005771123.1 385221990 12350656 complement(516864..517631) 1 NC_017361.1 COG0796 Glutamate racemase; glutamate racemase 517631 12350656 HPSA_02535 Helicobacter pylori SouthAfrica7 glutamate racemase YP_005771123.1 516864 R 907239 CDS YP_005771124.1 385221991 12350657 complement(517651..518967) 1 NC_017361.1 COG1158 Transcription termination factor; transcription termination factor Rho 518967 rho 12350657 rho Helicobacter pylori SouthAfrica7 transcription termination factor Rho YP_005771124.1 517651 R 907239 CDS YP_005771125.1 385221992 12350658 519230..519433 1 NC_017361.1 COG0254 Ribosomal protein L31; 50S ribosomal protein L31 519433 rpmE 12350658 rpmE Helicobacter pylori SouthAfrica7 50S ribosomal protein L31 YP_005771125.1 519230 D 907239 CDS YP_005771126.1 385221993 12350659 519458..520321 1 NC_017361.1 COG0313 Predicted methyltransferases; putative methylase 520321 12350659 HPSA_02550 Helicobacter pylori SouthAfrica7 putative methylase YP_005771126.1 519458 D 907239 CDS YP_005771127.1 385221994 12350660 520334..521017 1 NC_017361.1 COG0566 rRNA methylases; RNA methyltransferase 521017 12350660 HPSA_02555 Helicobacter pylori SouthAfrica7 RNA methyltransferase YP_005771127.1 520334 D 907239 CDS YP_005771128.1 385221995 12350661 521029..521994 1 NC_017361.1 hypothetical protein 521994 12350661 HPSA_02560 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771128.1 521029 D 907239 CDS YP_005771129.1 385221996 12350662 521991..522815 1 NC_017361.1 COG1217 Predicted membrane GTPase involved in stress response; hypothetical protein 522815 12350662 HPSA_02565 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771129.1 521991 D 907239 CDS YP_005771130.1 385221997 12350663 complement(522879..523322) 1 NC_017361.1 hypothetical protein 523322 12350663 HPSA_02570 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771130.1 522879 R 907239 CDS YP_005771131.1 385221998 12350664 complement(523562..524503) 1 NC_017361.1 COG0825 Acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase carboxyltransferase subunit alpha 524503 12350664 HPSA_02575 Helicobacter pylori SouthAfrica7 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_005771131.1 523562 R 907239 CDS YP_005771132.1 385221999 12350665 complement(524526..525764) 1 NC_017361.1 COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; 3-oxoacyl-(acyl carrier protein) synthase II 525764 12350665 HPSA_02580 Helicobacter pylori SouthAfrica7 3-oxoacyl-(acyl carrier protein) synthase II YP_005771132.1 524526 R 907239 CDS YP_005771133.1 385222000 12350666 complement(525867..526103) 1 NC_017361.1 COG0236 Acyl carrier protein; acyl carrier protein 526103 acpP 12350666 acpP Helicobacter pylori SouthAfrica7 acyl carrier protein YP_005771133.1 525867 R 907239 CDS YP_005771134.1 385222001 12350667 complement(526329..527072) 1 NC_017361.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); 3-ketoacyl-ACP reductase 527072 fabG 12350667 fabG Helicobacter pylori SouthAfrica7 3-ketoacyl-ACP reductase YP_005771134.1 526329 R 907239 CDS YP_005771135.1 385222002 12350668 complement(527111..527323) 1 NC_017361.1 COG0828 Ribosomal protein S21; 30S ribosomal protein S21 527323 rpsU 12350668 rpsU Helicobacter pylori SouthAfrica7 30S ribosomal protein S21 YP_005771135.1 527111 R 907239 CDS YP_005771136.1 385222003 12350669 complement(527424..528674) 1 NC_017361.1 hypothetical protein 528674 12350669 HPSA_02600 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771136.1 527424 R 907239 CDS YP_005771137.1 385222004 12350670 528847..529050 1 NC_017361.1 hypothetical protein 529050 12350670 HPSA_02605 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771137.1 528847 D 907239 CDS YP_005771138.1 385222005 12350671 complement(529102..529749) 1 NC_017361.1 COG3059 Predicted membrane protein; hypothetical protein 529749 12350671 HPSA_02610 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771138.1 529102 R 907239 CDS YP_005771139.1 385222006 12350672 complement(529861..530682) 1 NC_017361.1 COG0253 Diaminopimelate epimerase; diaminopimelate epimerase 530682 dapF 12350672 dapF Helicobacter pylori SouthAfrica7 diaminopimelate epimerase YP_005771139.1 529861 R 907239 CDS YP_005771140.1 385222007 12350673 530799..531881 1 NC_017361.1 COG0628 Predicted permease; hypothetical protein 531881 12350673 HPSA_02620 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771140.1 530799 D 907239 CDS YP_005771141.1 385222008 12350674 complement(532819..533586) 1 NC_017361.1 hypothetical protein 533586 12350674 HPSA_02625 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771141.1 532819 R 907239 CDS YP_005771142.1 385222009 12350675 complement(533728..534828) 1 NC_017361.1 COG0012 Predicted GTPase, probable translation factor; GTP-dependent nucleic acid-binding protein EngD 534828 12350675 HPSA_02630 Helicobacter pylori SouthAfrica7 GTP-dependent nucleic acid-binding protein EngD YP_005771142.1 533728 R 907239 CDS YP_005771143.1 385222010 12350676 complement(534830..536320) 1 NC_017361.1 COG0260 Leucyl aminopeptidase; leucyl aminopeptidase 536320 12350676 HPSA_02635 Helicobacter pylori SouthAfrica7 leucyl aminopeptidase YP_005771143.1 534830 R 907239 CDS YP_005771144.1 385222011 12350677 complement(536371..536949) 1 NC_017361.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 536949 12350677 HPSA_02640 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771144.1 536371 R 907239 CDS YP_005771145.1 385222012 12350678 complement(536961..537500) 1 NC_017361.1 COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins; adenine phosphoribosyltransferase 537500 12350678 HPSA_02645 Helicobacter pylori SouthAfrica7 adenine phosphoribosyltransferase YP_005771145.1 536961 R 907239 CDS YP_005771146.1 385222013 12350679 complement(537560..537892) 1 NC_017361.1 hypothetical protein 537892 12350679 HPSA_02650 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771146.1 537560 R 907239 CDS YP_005771147.1 385222014 12350680 complement(537938..538399) 1 NC_017361.1 COG0698 Ribose 5-phosphate isomerase RpiB; ribose-5-phosphate isomerase B 538399 12350680 HPSA_02655 Helicobacter pylori SouthAfrica7 ribose-5-phosphate isomerase B YP_005771147.1 537938 R 907239 CDS YP_005771148.1 385222015 12350681 complement(538420..539118) 1 NC_017361.1 COG1994 Zn-dependent proteases; hypothetical protein 539118 12350681 HPSA_02660 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771148.1 538420 R 907239 CDS YP_005771149.1 385222016 12350682 complement(539127..539999) 1 NC_017361.1 COG0681 Signal peptidase I; signal peptidase I (lepB) 539999 12350682 HPSA_02665 Helicobacter pylori SouthAfrica7 signal peptidase I (lepB) YP_005771149.1 539127 R 907239 CDS YP_005771150.1 385222017 12350683 complement(540000..540872) 1 NC_017361.1 COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 540872 12350683 HPSA_02670 Helicobacter pylori SouthAfrica7 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_005771150.1 540000 R 907239 CDS YP_005771151.1 385222018 12350684 complement(541186..543216) 1 NC_017361.1 COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily; hypothetical protein 543216 12350684 HPSA_02675 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771151.1 541186 R 907239 CDS YP_005771152.1 385222019 12350685 complement(543213..543773) 1 NC_017361.1 hypothetical protein 543773 12350685 HPSA_02680 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771152.1 543213 R 907239 CDS YP_005771153.1 385222020 12350686 complement(543779..544777) 1 NC_017361.1 COG4692 Predicted neuraminidase (sialidase); neuraminidase (sialidase) 544777 12350686 HPSA_02685 Helicobacter pylori SouthAfrica7 neuraminidase (sialidase) YP_005771153.1 543779 R 907239 CDS YP_005771154.1 385222021 12350687 complement(544874..545893) 1 NC_017361.1 COG0418 Dihydroorotase; dihydroorotase 545893 12350687 HPSA_02690 Helicobacter pylori SouthAfrica7 dihydroorotase YP_005771154.1 544874 R 907239 CDS YP_005771155.1 385222022 12350688 complement(545903..546856) 1 NC_017361.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; hypothetical protein 546856 12350688 HPSA_02695 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771155.1 545903 R 907239 CDS YP_005771156.1 385222023 12350689 complement(547711..548082) 1 NC_017361.1 COG1886 Flagellar motor switch/type III secretory pathway protein; flagellar motor switch protein 548082 12350689 HPSA_02710 Helicobacter pylori SouthAfrica7 flagellar motor switch protein YP_005771156.1 547711 R 907239 CDS YP_005771157.1 385222024 12350690 complement(548164..548814) 1 NC_017361.1 COG0177 Predicted EndoIII-related endonuclease; endonuclease III 548814 12350690 HPSA_02715 Helicobacter pylori SouthAfrica7 endonuclease III YP_005771157.1 548164 R 907239 CDS YP_005771158.1 385222025 12350691 complement(548816..549046) 1 NC_017361.1 COG1918 Fe2+ transport system protein A; ferrous iron transport protein A 549046 12350691 HPSA_02720 Helicobacter pylori SouthAfrica7 ferrous iron transport protein A YP_005771158.1 548816 R 907239 CDS YP_005771159.1 385222026 12350692 complement(549048..551978) 1 NC_017361.1 hypothetical protein 551978 12350692 HPSA_02725 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771159.1 549048 R 907239 CDS YP_005771160.1 385222027 12350693 551896..552891 1 NC_017361.1 COG1559 Predicted periplasmic solute-binding protein; aminodeoxychorismate lyase 552891 12350693 HPSA_02730 Helicobacter pylori SouthAfrica7 aminodeoxychorismate lyase YP_005771160.1 551896 D 907239 CDS YP_005771161.1 385222028 12350694 553070..553411 1 NC_017361.1 COG1146 Ferredoxin; 2-oxoglutarate-acceptor oxidoreductase subunit OorD 553411 oorD 12350694 oorD Helicobacter pylori SouthAfrica7 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_005771161.1 553070 D 907239 CDS YP_005771162.1 385222029 12350695 553411..554538 1 NC_017361.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorA 554538 oorA 12350695 oorA Helicobacter pylori SouthAfrica7 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_005771162.1 553411 D 907239 CDS YP_005771163.1 385222030 12350696 554540..555361 1 NC_017361.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorB 555361 oorB 12350696 oorB Helicobacter pylori SouthAfrica7 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_005771163.1 554540 D 907239 CDS YP_005771164.1 385222031 12350697 555361..555915 1 NC_017361.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; 2-oxoglutarate-acceptor oxidoreductase subunit OorC 555915 oorC 12350697 oorC Helicobacter pylori SouthAfrica7 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_005771164.1 555361 D 907239 CDS YP_005771165.1 385222032 12350698 556024..557361 1 NC_017361.1 COG5610 Predicted hydrolase (HAD superfamily); hypothetical protein 557361 12350698 HPSA_02755 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771165.1 556024 D 907239 CDS YP_005771166.1 385222033 12350699 complement(557462..557878) 1 NC_017361.1 COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 557878 12350699 HPSA_02760 Helicobacter pylori SouthAfrica7 IS200 insertion sequence from SARA17 YP_005771166.1 557462 R 907239 CDS YP_005771167.1 385222034 12350700 557915..559243 1 NC_017361.1 COG0675 Transposase and inactivated derivatives; IS606 transposase 559243 12350700 HPSA_02765 Helicobacter pylori SouthAfrica7 IS606 transposase YP_005771167.1 557915 D 907239 CDS YP_005771168.1 385222035 12350701 559319..559771 1 NC_017361.1 hypothetical protein 559771 12350701 HPSA_02770 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771168.1 559319 D 907239 CDS YP_005771169.1 385222036 12350702 559931..560095 1 NC_017361.1 hypothetical protein 560095 12350702 HPSA_02775 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771169.1 559931 D 907239 CDS YP_005771170.1 385222037 12350703 560104..561576 1 NC_017361.1 COG1495 Disulfide bond formation protein DsbB; hypothetical protein 561576 12350703 HPSA_02780 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771170.1 560104 D 907239 CDS YP_005771171.1 385222038 12350704 complement(561774..561893) 1 NC_017361.1 hypothetical protein 561893 12350704 HPSA_02785 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771171.1 561774 R 907239 CDS YP_005771172.1 385222039 12350705 562056..562634 1 NC_017361.1 tumor necrosis factor alpha-inducing protein 562634 12350705 HPSA_02790 Helicobacter pylori SouthAfrica7 tumor necrosis factor alpha-inducing protein YP_005771172.1 562056 D 907239 CDS YP_005771173.1 385222040 12350706 complement(562637..564616) 1 NC_017361.1 COG0744 Membrane carboxypeptidase (penicillin-binding protein); penicillin-binding protein 1A 564616 12350706 HPSA_02795 Helicobacter pylori SouthAfrica7 penicillin-binding protein 1A YP_005771173.1 562637 R 907239 CDS YP_005771174.1 385222041 12350707 complement(564617..565738) 1 NC_017361.1 COG0156 7-keto-8-aminopelargonate synthetase and related enzymes; 8-amino-7-oxononanoate synthase 565738 12350707 HPSA_02800 Helicobacter pylori SouthAfrica7 8-amino-7-oxononanoate synthase YP_005771174.1 564617 R 907239 CDS YP_005771175.1 385222042 12350708 complement(565761..567062) 1 NC_017361.1 COG0840 Methyl-accepting chemotaxis protein; hemolysin secretion protein 567062 12350708 HPSA_02805 Helicobacter pylori SouthAfrica7 hemolysin secretion protein YP_005771175.1 565761 R 907239 CDS YP_005771176.1 385222043 12350709 complement(567779..568429) 1 NC_017361.1 hypothetical protein 568429 12350709 HPSA_02820 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771176.1 567779 R 907239 CDS YP_005771177.1 385222044 12350710 complement(568432..568563) 1 NC_017361.1 hypothetical protein 568563 12350710 HPSA_02825 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771177.1 568432 R 907239 CDS YP_005771178.1 385222045 12350711 568865..570397 1 NC_017361.1 COG1344 Flagellin and related hook-associated proteins; flagellin A 570397 12350711 HPSA_02830 Helicobacter pylori SouthAfrica7 flagellin A YP_005771178.1 568865 D 907239 CDS YP_005771179.1 385222046 12350712 570526..571182 1 NC_017361.1 COG2231 Uncharacterized protein related to Endonuclease III; 3-methyladenine DNA glycosylase 571182 12350712 HPSA_02835 Helicobacter pylori SouthAfrica7 3-methyladenine DNA glycosylase YP_005771179.1 570526 D 907239 CDS YP_005771180.1 385222047 12350713 571179..571796 1 NC_017361.1 hypothetical protein 571796 12350713 HPSA_02840 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771180.1 571179 D 907239 CDS YP_005771181.1 385222048 12350714 571865..572884 1 NC_017361.1 COG0407 Uroporphyrinogen-III decarboxylase; uroporphyrinogen decarboxylase 572884 hemE 12350714 hemE Helicobacter pylori SouthAfrica7 uroporphyrinogen decarboxylase YP_005771181.1 571865 D 907239 CDS YP_005771182.1 385222049 12350715 572894..574342 1 NC_017361.1 COG1538 Outer membrane protein; outer-membrane protein of the hefABC efflux system 574342 12350715 HPSA_02850 Helicobacter pylori SouthAfrica7 outer-membrane protein of the hefABC efflux system YP_005771182.1 572894 D 907239 CDS YP_005771183.1 385222050 12350716 574353..575057 1 NC_017361.1 COG0845 Membrane-fusion protein; putative efflux transporter 575057 12350716 HPSA_02855 Helicobacter pylori SouthAfrica7 putative efflux transporter YP_005771183.1 574353 D 907239 CDS YP_005771184.1 385222051 12350717 575070..578156 1 NC_017361.1 COG0841 Cation/multidrug efflux pump; acriflavine resistance protein AcrB 578156 12350717 HPSA_02860 Helicobacter pylori SouthAfrica7 acriflavine resistance protein AcrB YP_005771184.1 575070 D 907239 CDS YP_005771185.1 385222052 12350718 578153..578722 1 NC_017361.1 COG0015 Adenylosuccinate lyase; hypothetical protein 578722 12350718 HPSA_02865 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771185.1 578153 D 907239 CDS YP_005771186.1 385222053 12350719 578885..588457 1 NC_017361.1 putative vacuolating cytotoxin VacA 588457 12350719 HPSA_02870 Helicobacter pylori SouthAfrica7 putative vacuolating cytotoxin VacA YP_005771186.1 578885 D 907239 CDS YP_005771187.1 385222054 12350720 complement(588513..588866) 1 NC_017361.1 COG0842 ABC-type multidrug transport system, permease component; multidrug ABC transporter permease 588866 12350720 HPSA_02875 Helicobacter pylori SouthAfrica7 multidrug ABC transporter permease YP_005771187.1 588513 R 907239 CDS YP_005771188.1 385222055 12350721 complement(590229..590561) 1 NC_017361.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; hypothetical protein 590561 12350721 HPSA_02880 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771188.1 590229 R 907239 CDS YP_005771189.1 385222056 12350722 complement(590743..592716) 1 NC_017361.1 COG0272 NAD-dependent DNA ligase (contains BRCT domain type II); NAD-dependent DNA ligase LigA 592716 ligA 12350722 ligA Helicobacter pylori SouthAfrica7 NAD-dependent DNA ligase LigA YP_005771189.1 590743 R 907239 CDS YP_005771190.1 385222057 12350723 592793..593734 1 NC_017361.1 COG0835 Chemotaxis signal transduction protein; chemotaxis protein 593734 12350723 HPSA_02890 Helicobacter pylori SouthAfrica7 chemotaxis protein YP_005771190.1 592793 D 907239 CDS YP_005771191.1 385222058 12350724 593770..595503 1 NC_017361.1 COG0173 Aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 595503 aspS 12350724 aspS Helicobacter pylori SouthAfrica7 aspartyl-tRNA synthetase YP_005771191.1 593770 D 907239 CDS YP_005771192.1 385222059 12350725 595520..596095 1 NC_017361.1 COG0563 Adenylate kinase and related kinases; adenylate kinase 596095 adk 12350725 adk Helicobacter pylori SouthAfrica7 adenylate kinase YP_005771192.1 595520 D 907239 CDS YP_005771193.1 385222060 12350726 597164..597766 1 NC_017361.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; putative lipopolysaccharide biosynthesis protein 597766 12350726 HPSA_02915 Helicobacter pylori SouthAfrica7 putative lipopolysaccharide biosynthesis protein YP_005771193.1 597164 D 907239 CDS YP_005771194.1 385222061 12350727 598003..598449 1 NC_017361.1 putative lipopolysaccharide biosynthesis protein 598449 12350727 HPSA_02920 Helicobacter pylori SouthAfrica7 putative lipopolysaccharide biosynthesis protein YP_005771194.1 598003 D 907239 CDS YP_005771195.1 385222062 12350728 598509..599030 1 NC_017361.1 COG0221 Inorganic pyrophosphatase; inorganic pyrophosphatase 599030 12350728 HPSA_02925 Helicobacter pylori SouthAfrica7 inorganic pyrophosphatase YP_005771195.1 598509 D 907239 CDS YP_005771196.1 385222063 12350729 complement(599182..601422) 1 NC_017361.1 COG1193 Mismatch repair ATPase (MutS family); recombination and DNA strand exchange inhibitor protein 601422 12350729 HPSA_02930 Helicobacter pylori SouthAfrica7 recombination and DNA strand exchange inhibitor protein YP_005771196.1 599182 R 907239 CDS YP_005771197.1 385222064 12350730 complement(601438..601800) 1 NC_017361.1 hypothetical protein 601800 12350730 HPSA_02935 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771197.1 601438 R 907239 CDS YP_005771198.1 385222065 12350731 complement(601800..603149) 1 NC_017361.1 COG0773 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase 603149 murC 12350731 murC Helicobacter pylori SouthAfrica7 UDP-N-acetylmuramate--L-alanine ligase YP_005771198.1 601800 R 907239 CDS YP_005771199.1 385222066 12350732 complement(603142..604269) 1 NC_017361.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; hypothetical protein 604269 12350732 HPSA_02945 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771199.1 603142 R 907239 CDS YP_005771200.1 385222067 12350733 604409..605485 1 NC_017361.1 COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 605485 ispG 12350733 ispG Helicobacter pylori SouthAfrica7 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_005771200.1 604409 D 907239 CDS YP_005771201.1 385222068 12350734 605499..606701 1 NC_017361.1 COG2171 Tetrahydrodipicolinate N-succinyltransferase; hypothetical protein 606701 12350734 HPSA_02955 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771201.1 605499 D 907239 CDS YP_005771202.1 385222069 12350735 606713..607771 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 607771 12350735 HPSA_02960 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771202.1 606713 D 907239 CDS YP_005771203.1 385222070 12350736 608158..610209 1 NC_017361.1 COG1479 Uncharacterized conserved protein; hypothetical protein 610209 12350736 HPSA_02965 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771203.1 608158 D 907239 CDS YP_005771204.1 385222071 12350737 complement(610347..610931) 1 NC_017361.1 COG2249 Putative NADPH-quinone reductase (modulator of drug activity B); modulator of drug activity (mda66) 610931 12350737 HPSA_02970 Helicobacter pylori SouthAfrica7 modulator of drug activity (mda66) YP_005771204.1 610347 R 907239 CDS YP_005771205.1 385222072 12350738 611091..612248 1 NC_017361.1 COG1740 Ni,Fe-hydrogenase I small subunit; Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive Ni/Fe-hydrogenase small chain precursor)(Membrane-bound) 612248 12350738 HPSA_02975 Helicobacter pylori SouthAfrica7 Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive Ni/Fe-hydrogenase small chain precursor)(Membrane-bound) YP_005771205.1 611091 D 907239 CDS YP_005771206.1 385222073 12350739 612258..613994 1 NC_017361.1 COG0374 Ni,Fe-hydrogenase I large subunit; nickel-dependent hydrogenase, large subunit 613994 12350739 HPSA_02980 Helicobacter pylori SouthAfrica7 nickel-dependent hydrogenase, large subunit YP_005771206.1 612258 D 907239 CDS YP_005771207.1 385222074 12350740 614007..614681 1 NC_017361.1 COG1969 Ni,Fe-hydrogenase I cytochrome b subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit 614681 12350740 HPSA_02985 Helicobacter pylori SouthAfrica7 Ni/Fe-hydrogenase, b-type cytochrome subunit YP_005771207.1 614007 D 907239 CDS YP_005771208.1 385222075 12350741 614678..615214 1 NC_017361.1 COG0680 Ni,Fe-hydrogenase maturation factor; hydrogenase expression/formation protein 615214 12350741 HPSA_02990 Helicobacter pylori SouthAfrica7 hydrogenase expression/formation protein YP_005771208.1 614678 D 907239 CDS YP_005771209.1 385222076 12349520 615216..616769 1 NC_017361.1 COG0218 Predicted GTPase; hypothetical protein 616769 12349520 HPSA_02995 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771209.1 615216 D 907239 CDS YP_005771210.1 385222077 12349521 complement(616775..617188) 1 NC_017361.1 hypothetical protein 617188 12349521 HPSA_03000 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771210.1 616775 R 907239 CDS YP_005771211.1 385222078 12349522 complement(617332..617784) 1 NC_017361.1 hypothetical protein 617784 12349522 HPSA_03005 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771211.1 617332 R 907239 CDS YP_005771212.1 385222079 12349523 complement(618076..618177) 1 NC_017361.1 hypothetical protein 618177 12349523 HPSA_03010 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771212.1 618076 R 907239 CDS YP_005771213.1 385222080 12349524 618206..618892 1 NC_017361.1 outer membrane protein HopH 618892 12349524 HPSA_03015 Helicobacter pylori SouthAfrica7 outer membrane protein HopH YP_005771213.1 618206 D 907239 CDS YP_005771214.1 385222081 12349525 complement(619130..619807) 1 NC_017361.1 COG0603 Predicted PP-loop superfamily ATPase; hypothetical protein 619807 12349525 HPSA_03020 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771214.1 619130 R 907239 CDS YP_005771215.1 385222082 12349526 619869..621599 1 NC_017361.1 COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; putative polynucleotide adenylyltransferase; putative poly(A) polymerase 621599 12349526 HPSA_03025 Helicobacter pylori SouthAfrica7 putative polynucleotide adenylyltransferase; putative poly(A) polymerase YP_005771215.1 619869 D 907239 CDS YP_005771216.1 385222083 12349527 621615..622472 1 NC_017361.1 COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; putative 3-hydroxyacid dehydrogenase 622472 12349527 HPSA_03030 Helicobacter pylori SouthAfrica7 putative 3-hydroxyacid dehydrogenase YP_005771216.1 621615 D 907239 CDS YP_005771217.1 385222084 12349528 622474..623127 1 NC_017361.1 COG0778 Nitroreductase; NAD(P)H-flavin oxidoreductase 623127 12349528 HPSA_03035 Helicobacter pylori SouthAfrica7 NAD(P)H-flavin oxidoreductase YP_005771217.1 622474 D 907239 CDS YP_005771218.1 385222085 12349529 623289..624608 1 NC_017361.1 COG0008 Glutamyl- and glutaminyl-tRNA synthetases; glutamylglutaminyl-tRNA synthetase 624608 12349529 HPSA_03040 Helicobacter pylori SouthAfrica7 glutamylglutaminyl-tRNA synthetase YP_005771218.1 623289 D 907239 CDS YP_005771219.1 385222086 12349530 624605..624898 1 NC_017361.1 COG0762 Predicted integral membrane protein; hypothetical protein 624898 12349530 HPSA_03045 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771219.1 624605 D 907239 CDS YP_005771220.1 385222087 12349531 624907..626583 1 NC_017361.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); lytic murein transglycosylase 626583 12349531 HPSA_03050 Helicobacter pylori SouthAfrica7 lytic murein transglycosylase YP_005771220.1 624907 D 907239 CDS YP_005771221.1 385222088 12349532 626583..627404 1 NC_017361.1 COG1210 UDP-glucose pyrophosphorylase; UTP-glucose-1-phosphate uridylyltransferase 627404 12349532 HPSA_03055 Helicobacter pylori SouthAfrica7 UTP-glucose-1-phosphate uridylyltransferase YP_005771221.1 626583 D 907239 CDS YP_005771222.1 385222089 12349533 627416..627820 1 NC_017361.1 hypothetical protein 627820 12349533 HPSA_03060 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771222.1 627416 D 907239 CDS YP_005771223.1 385222090 12349534 627823..629091 1 NC_017361.1 COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 629091 12349534 HPSA_03065 Helicobacter pylori SouthAfrica7 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_005771223.1 627823 D 907239 CDS YP_005771224.1 385222091 12349535 629149..630555 1 NC_017361.1 COG1027 Aspartate ammonia-lyase; aspartate ammonia-lyase 630555 aspA 12349535 aspA Helicobacter pylori SouthAfrica7 aspartate ammonia-lyase YP_005771224.1 629149 D 907239 CDS YP_005771225.1 385222092 12349536 630600..631190 1 NC_017361.1 COG1573 Uracil-DNA glycosylase; hypothetical protein 631190 12349536 HPSA_03075 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771225.1 630600 D 907239 CDS YP_005771226.1 385222093 12349537 complement(631200..632543) 1 NC_017361.1 alpha (1,3)-fucosyltransferase 632543 12349537 HPSA_03080 Helicobacter pylori SouthAfrica7 alpha (1,3)-fucosyltransferase YP_005771226.1 631200 R 907239 CDS YP_005771227.1 385222094 12349538 complement(632588..633211) 1 NC_017361.1 COG0560 Phosphoserine phosphatase; phosphoserine phosphatase SerB 633211 12349538 HPSA_03085 Helicobacter pylori SouthAfrica7 phosphoserine phosphatase SerB YP_005771227.1 632588 R 907239 CDS YP_005771228.1 385222095 12349539 complement(633226..633729) 1 NC_017361.1 COG1528 Ferritin-like protein; ferritin 633729 12349539 HPSA_03090 Helicobacter pylori SouthAfrica7 ferritin YP_005771228.1 633226 R 907239 CDS YP_005771229.1 385222096 12349540 634035..635117 1 NC_017361.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 635117 12349540 HPSA_03095 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771229.1 634035 D 907239 CDS YP_005771230.1 385222097 12349541 637917..638978 1 NC_017361.1 COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes; hypothetical protein 638978 12349541 HPSA_03110 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771230.1 637917 D 907239 CDS YP_005771231.1 385222098 12349542 638984..640282 1 NC_017361.1 COG0612 Predicted Zn-dependent peptidases; processing zinc-metalloprotease 640282 12349542 HPSA_03115 Helicobacter pylori SouthAfrica7 processing zinc-metalloprotease YP_005771231.1 638984 D 907239 CDS YP_005771232.1 385222099 12349543 640282..641706 1 NC_017361.1 COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog); aspartyl/glutamyl-tRNA amidotransferase subunit B 641706 gatB 12349543 gatB Helicobacter pylori SouthAfrica7 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_005771232.1 640282 D 907239 CDS YP_005771233.1 385222100 12349544 641706..642950 1 NC_017361.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 642950 12349544 HPSA_03125 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771233.1 641706 D 907239 CDS YP_005771234.1 385222101 12349545 642961..643971 1 NC_017361.1 COG2956 Predicted N-acetylglucosaminyl transferase; hypothetical protein 643971 12349545 HPSA_03130 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771234.1 642961 D 907239 CDS YP_005771235.1 385222102 12349546 643972..644403 1 NC_017361.1 COG0328 Ribonuclease HI; ribonuclease H 644403 rnhA 12349546 rnhA Helicobacter pylori SouthAfrica7 ribonuclease H YP_005771235.1 643972 D 907239 CDS YP_005771236.1 385222103 12349547 644414..645118 1 NC_017361.1 COG0571 dsRNA-specific ribonuclease; ribonuclease III 645118 rnc 12349547 rnc Helicobacter pylori SouthAfrica7 ribonuclease III YP_005771236.1 644414 D 907239 CDS YP_005771237.1 385222104 12349548 645115..646212 1 NC_017361.1 COG0082 Chorismate synthase; chorismate synthase 646212 12349548 HPSA_03145 Helicobacter pylori SouthAfrica7 chorismate synthase YP_005771237.1 645115 D 907239 CDS YP_005771238.1 385222105 12349549 646249..646764 1 NC_017361.1 hypothetical protein 646764 12349549 HPSA_03150 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771238.1 646249 D 907239 CDS YP_005771239.1 385222106 12349550 646764..648137 1 NC_017361.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 648137 12349550 HPSA_03155 Helicobacter pylori SouthAfrica7 coproporphyrinogen III oxidase YP_005771239.1 646764 D 907239 CDS YP_005771240.1 385222107 12349551 648134..649423 1 NC_017361.1 COG0247 Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase 649423 12349551 HPSA_03160 Helicobacter pylori SouthAfrica7 glycerol-3-phosphate dehydrogenase YP_005771240.1 648134 D 907239 CDS YP_005771241.1 385222108 12349552 649499..650200 1 NC_017361.1 COG4889 Predicted helicase; hypothetical protein 650200 12349552 HPSA_03165 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771241.1 649499 D 907239 CDS YP_005771242.1 385222109 12349553 650223..650351 1 NC_017361.1 COG4889 Predicted helicase; hypothetical protein 650351 12349553 HPSA_03170 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771242.1 650223 D 907239 CDS YP_005771243.1 385222110 12349554 650348..652822 1 NC_017361.1 COG0846 NAD-dependent protein deacetylases, SIR2 family; hypothetical protein 652822 12349554 HPSA_03175 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771243.1 650348 D 907239 CDS YP_005771244.1 385222111 12349555 652797..652988 1 NC_017361.1 hypothetical protein 652988 12349555 HPSA_03180 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771244.1 652797 D 907239 CDS YP_005771245.1 385222112 12349556 653042..653854 1 NC_017361.1 hypothetical protein 653854 12349556 HPSA_03185 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771245.1 653042 D 907239 CDS YP_005771246.1 385222113 12349557 653857..653979 1 NC_017361.1 hypothetical protein 653979 12349557 HPSA_03190 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771246.1 653857 D 907239 CDS YP_005771247.1 385222114 12349558 654008..655180 1 NC_017361.1 COG0436 Aspartate/tyrosine/aromatic aminotransferase; aspartate aminotransferase 655180 12349558 HPSA_03195 Helicobacter pylori SouthAfrica7 aspartate aminotransferase YP_005771247.1 654008 D 907239 CDS YP_005771248.1 385222115 12349559 656667..657734 1 NC_017361.1 COG0582 Integrase; XerCD family integrase/recombinase 657734 12349559 HPSA_03210 Helicobacter pylori SouthAfrica7 XerCD family integrase/recombinase YP_005771248.1 656667 D 907239 CDS YP_005771249.1 385222116 12349560 complement(657798..658298) 1 NC_017361.1 COG0350 Methylated DNA-protein cysteine methyltransferase; methylated-DNA--protein-cysteine methyltransferase 658298 12349560 HPSA_03215 Helicobacter pylori SouthAfrica7 methylated-DNA--protein-cysteine methyltransferase YP_005771249.1 657798 R 907239 CDS YP_005771250.1 385222117 12349561 complement(658302..659069) 1 NC_017361.1 COG0730 Predicted permeases; hypothetical protein 659069 12349561 HPSA_03220 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771250.1 658302 R 907239 CDS YP_005771251.1 385222118 12349562 complement(659183..660130) 1 NC_017361.1 COG0673 Predicted dehydrogenases and related proteins; putative lipopolysaccharide biosynthesis protein 660130 12349562 HPSA_03225 Helicobacter pylori SouthAfrica7 putative lipopolysaccharide biosynthesis protein YP_005771251.1 659183 R 907239 CDS YP_005771252.1 385222119 12349563 complement(660192..662558) 1 NC_017361.1 COG0209 Ribonucleotide reductase, alpha subunit; ribonucleotide-diphosphate reductase subunit alpha 662558 12349563 HPSA_03230 Helicobacter pylori SouthAfrica7 ribonucleotide-diphosphate reductase subunit alpha YP_005771252.1 660192 R 907239 CDS YP_005771253.1 385222120 12349564 complement(662740..663246) 1 NC_017361.1 hypothetical protein 663246 12349564 HPSA_03235 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771253.1 662740 R 907239 CDS YP_005771254.1 385222121 12349565 complement(663286..663606) 1 NC_017361.1 hypothetical protein 663606 12349565 HPSA_03240 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771254.1 663286 R 907239 CDS YP_005771255.1 385222122 12349566 complement(663893..665194) 1 NC_017361.1 COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 665194 glmU 12349566 glmU Helicobacter pylori SouthAfrica7 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_005771255.1 663893 R 907239 CDS YP_005771256.1 385222123 12349567 665291..666037 1 NC_017361.1 COG1338 Flagellar biosynthesis pathway, component FliP; flagellar biosynthesis protein FliP 666037 fliP 12349567 fliP Helicobacter pylori SouthAfrica7 flagellar biosynthesis protein FliP YP_005771256.1 665291 D 907239 CDS YP_005771257.1 385222124 12349568 complement(666080..668383) 1 NC_017361.1 COG4772 Outer membrane receptor for Fe3+-dicitrate; Iron(III) dicitrate transport protein FecA; putative signal peptide 668383 12349568 HPSA_03255 Helicobacter pylori SouthAfrica7 Iron(III) dicitrate transport protein FecA; putative signal peptide YP_005771257.1 666080 R 907239 CDS YP_005771258.1 385222125 12349569 complement(668642..670570) 1 NC_017361.1 COG0370 Fe2+ transport system protein B; iron(II) transport protein (feoB) 670570 12349569 HPSA_03260 Helicobacter pylori SouthAfrica7 iron(II) transport protein (feoB) YP_005771258.1 668642 R 907239 CDS YP_005771259.1 385222126 12349570 670705..671517 1 NC_017361.1 COG3298 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; hypothetical protein 671517 12349570 HPSA_03265 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771259.1 670705 D 907239 CDS YP_005771260.1 385222127 12349571 671819..672994 1 NC_017361.1 COG0183 Acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 672994 12349571 HPSA_03270 Helicobacter pylori SouthAfrica7 acetyl-CoA acetyltransferase YP_005771260.1 671819 D 907239 CDS YP_005771261.1 385222128 12349572 673005..673703 1 NC_017361.1 COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit; succinyl-CoA-transferase subunit A 673703 12349572 HPSA_03275 Helicobacter pylori SouthAfrica7 succinyl-CoA-transferase subunit A YP_005771261.1 673005 D 907239 CDS YP_005771262.1 385222129 12349573 673700..674323 1 NC_017361.1 COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit; succinyl-CoA-transferase subunit B 674323 12349573 HPSA_03280 Helicobacter pylori SouthAfrica7 succinyl-CoA-transferase subunit B YP_005771262.1 673700 D 907239 CDS YP_005771263.1 385222130 12349574 674342..675706 1 NC_017361.1 COG2031 Short chain fatty acids transporter; short-chain fatty acids transporter 675706 12349574 HPSA_03285 Helicobacter pylori SouthAfrica7 short-chain fatty acids transporter YP_005771263.1 674342 D 907239 CDS YP_005771264.1 385222131 12349575 675835..676836 1 NC_017361.1 COG3528 Uncharacterized protein conserved in bacteria; outer membrane protein 676836 12349575 HPSA_03290 Helicobacter pylori SouthAfrica7 outer membrane protein YP_005771264.1 675835 D 907239 CDS YP_005771265.1 385222132 12349576 677069..679210 1 NC_017361.1 COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit; hydantoin utilization protein A 679210 12349576 HPSA_03295 Helicobacter pylori SouthAfrica7 hydantoin utilization protein A YP_005771265.1 677069 D 907239 CDS YP_005771266.1 385222133 12349577 679222..681519 1 NC_017361.1 COG0146 N-methylhydantoinase B/acetone carboxylase, alpha subunit; N-methyl hydantoinase 681519 12349577 HPSA_03300 Helicobacter pylori SouthAfrica7 N-methyl hydantoinase YP_005771266.1 679222 D 907239 CDS YP_005771267.1 385222134 12349578 681548..682048 1 NC_017361.1 COG4647 Acetone carboxylase, gamma subunit; hypothetical protein 682048 12349578 HPSA_03305 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771267.1 681548 D 907239 CDS YP_005771268.1 385222135 12349579 682251..682439 1 NC_017361.1 hypothetical protein 682439 12349579 HPSA_03310 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771268.1 682251 D 907239 CDS YP_005771269.1 385222136 12349580 682454..683482 1 NC_017361.1 hypothetical protein 683482 12349580 HPSA_03315 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771269.1 682454 D 907239 CDS YP_005771270.1 385222137 12349581 683475..683861 1 NC_017361.1 COG0818 Diacylglycerol kinase; diacylglycerol kinase 683861 12349581 HPSA_03320 Helicobacter pylori SouthAfrica7 diacylglycerol kinase YP_005771270.1 683475 D 907239 CDS YP_005771271.1 385222138 12349582 683881..686373 1 NC_017361.1 COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; DNA gyrase subunit A 686373 12349582 HPSA_03325 Helicobacter pylori SouthAfrica7 DNA gyrase subunit A YP_005771271.1 683881 D 907239 CDS YP_005771272.1 385222139 12349583 686373..686846 1 NC_017361.1 hypothetical protein 686846 12349583 HPSA_03330 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771272.1 686373 D 907239 CDS YP_005771273.1 385222140 12349584 686843..687988 1 NC_017361.1 COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; response regulator 687988 12349584 HPSA_03335 Helicobacter pylori SouthAfrica7 response regulator YP_005771273.1 686843 D 907239 CDS YP_005771274.1 385222141 12349585 688108..688383 1 NC_017361.1 hypothetical protein 688383 12349585 HPSA_03340 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771274.1 688108 D 907239 CDS YP_005771275.1 385222142 12349586 688466..688930 1 NC_017361.1 hypothetical protein 688930 12349586 HPSA_03345 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771275.1 688466 D 907239 CDS YP_005771276.1 385222143 12349587 688935..689054 1 NC_017361.1 hypothetical protein 689054 12349587 HPSA_03350 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771276.1 688935 D 907239 CDS YP_005771277.1 385222144 12349588 complement(689253..689417) 1 NC_017361.1 hypothetical protein 689417 12349588 HPSA_03355 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771277.1 689253 R 907239 CDS YP_005771278.1 385222145 12349589 complement(689544..692369) 1 NC_017361.1 COG0178 Excinuclease ATPase subunit; excinuclease ABC subunit A 692369 uvrA 12349589 uvrA Helicobacter pylori SouthAfrica7 excinuclease ABC subunit A YP_005771278.1 689544 R 907239 CDS YP_005771279.1 385222146 12349590 692534..693355 1 NC_017361.1 outer membrane protein (omp15) 693355 12349590 HPSA_03365 Helicobacter pylori SouthAfrica7 outer membrane protein (omp15) YP_005771279.1 692534 D 907239 CDS YP_005771280.1 385222147 12349591 complement(693419..693574) 1 NC_017361.1 hypothetical protein 693574 12349591 HPSA_03370 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771280.1 693419 R 907239 CDS YP_005771281.1 385222148 12349592 693533..694459 1 NC_017361.1 COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; S-adenosyl-methyltransferase MraW 694459 mraW 12349592 mraW Helicobacter pylori SouthAfrica7 S-adenosyl-methyltransferase MraW YP_005771281.1 693533 D 907239 CDS YP_005771282.1 385222149 12349593 694467..694811 1 NC_017361.1 hypothetical protein 694811 12349593 HPSA_03380 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771282.1 694467 D 907239 CDS YP_005771283.1 385222150 12349594 694801..694977 1 NC_017361.1 hypothetical protein 694977 12349594 HPSA_03385 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771283.1 694801 D 907239 CDS YP_005771284.1 385222151 12349595 695159..696055 1 NC_017361.1 COG1912 Uncharacterized conserved protein; hypothetical protein 696055 12349595 HPSA_03390 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771284.1 695159 D 907239 CDS YP_005771285.1 385222152 12349596 696336..698312 1 NC_017361.1 putative outer membrane protein 698312 12349596 HPSA_03395 Helicobacter pylori SouthAfrica7 putative outer membrane protein YP_005771285.1 696336 D 907239 CDS YP_005771286.1 385222153 12349597 complement(698439..698531) 1 NC_017361.1 hypothetical protein 698531 12349597 HPSA_03400 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771286.1 698439 R 907239 CDS YP_005771287.1 385222154 12349598 698517..699737 1 NC_017361.1 COG1896 Predicted hydrolases of HD superfamily; hypothetical protein 699737 12349598 HPSA_03405 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771287.1 698517 D 907239 CDS YP_005771288.1 385222155 12349599 699877..700596 1 NC_017361.1 COG3177 Uncharacterized conserved protein; Fic family protein 700596 12349599 HPSA_03410 Helicobacter pylori SouthAfrica7 Fic family protein YP_005771288.1 699877 D 907239 CDS YP_005771289.1 385222156 12349600 complement(700610..701854) 1 NC_017361.1 COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase factor sigma-54 701854 12349600 HPSA_03415 Helicobacter pylori SouthAfrica7 RNA polymerase factor sigma-54 YP_005771289.1 700610 R 907239 CDS YP_005771290.1 385222157 12349601 complement(701857..702579) 1 NC_017361.1 COG1137 ABC-type (unclassified) transport system, ATPase component; ABC transporter ATP-binding protein 702579 12349601 HPSA_03420 Helicobacter pylori SouthAfrica7 ABC transporter ATP-binding protein YP_005771290.1 701857 R 907239 CDS YP_005771291.1 385222158 12349602 complement(702672..702992) 1 NC_017361.1 COG0802 Predicted ATPase or kinase; hypothetical protein 702992 12349602 HPSA_03425 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771291.1 702672 R 907239 CDS YP_005771292.1 385222159 12349603 complement(702989..704773) 1 NC_017361.1 COG2812 DNA polymerase III, gamma/tau subunits; DNA polymerase III subunits gamma and tau 704773 12349603 HPSA_03430 Helicobacter pylori SouthAfrica7 DNA polymerase III subunits gamma and tau YP_005771292.1 702989 R 907239 CDS YP_005771293.1 385222160 12349604 complement(704843..705475) 1 NC_017361.1 COG1279 Lysine efflux permease; hypothetical protein 705475 12349604 HPSA_03435 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771293.1 704843 R 907239 CDS YP_005771294.1 385222161 12349605 705724..706146 1 NC_017361.1 hypothetical protein 706146 12349605 HPSA_03440 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771294.1 705724 D 907239 CDS YP_005771295.1 385222162 12349606 706175..706633 1 NC_017361.1 hypothetical protein 706633 12349606 HPSA_03445 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771295.1 706175 D 907239 CDS YP_005771296.1 385222163 12349607 706825..707268 1 NC_017361.1 hypothetical protein 707268 12349607 HPSA_03450 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771296.1 706825 D 907239 CDS YP_005771297.1 385222164 12349608 complement(707313..708308) 1 NC_017361.1 COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D; L-asparaginase II 708308 12349608 HPSA_03455 Helicobacter pylori SouthAfrica7 L-asparaginase II YP_005771297.1 707313 R 907239 CDS YP_005771298.1 385222165 12349609 708396..709724 1 NC_017361.1 COG2704 Anaerobic C4-dicarboxylate transporter; anaerobic C4-dicarboxylate transporter 709724 12349609 HPSA_03460 Helicobacter pylori SouthAfrica7 anaerobic C4-dicarboxylate transporter YP_005771298.1 708396 D 907239 CDS YP_005771299.1 385222166 12349610 complement(709801..711756) 1 NC_017361.1 Outer membrane protein HopP 711756 12349610 HPSA_03465 Helicobacter pylori SouthAfrica7 Outer membrane protein HopP YP_005771299.1 709801 R 907239 CDS YP_005771300.1 385222167 12349611 complement(712003..712920) 1 NC_017361.1 putative Outer membrane protein 712920 12349611 HPSA_03470 Helicobacter pylori SouthAfrica7 putative Outer membrane protein YP_005771300.1 712003 R 907239 CDS YP_005771301.1 385222168 12349612 complement(712890..713876) 1 NC_017361.1 COG0042 tRNA-dihydrouridine synthase; putative transcriptional regulator 713876 12349612 HPSA_03475 Helicobacter pylori SouthAfrica7 putative transcriptional regulator YP_005771301.1 712890 R 907239 CDS YP_005771302.1 385222169 12349613 complement(713967..714983) 1 NC_017361.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthase 714983 12349613 HPSA_03480 Helicobacter pylori SouthAfrica7 tRNA(Ile)-lysidine synthase YP_005771302.1 713967 R 907239 CDS YP_005771303.1 385222170 12349614 complement(715020..716087) 1 NC_017361.1 hypothetical protein 716087 12349614 HPSA_03485 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771303.1 715020 R 907239 CDS YP_005771304.1 385222171 12349615 complement(716096..716401) 1 NC_017361.1 hypothetical protein 716401 12349615 HPSA_03490 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771304.1 716096 R 907239 CDS YP_005771305.1 385222172 12349616 complement(716493..718205) 1 NC_017361.1 COG1160 Predicted GTPases; hypothetical protein 718205 12349616 HPSA_03495 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771305.1 716493 R 907239 CDS YP_005771306.1 385222173 12349617 complement(718198..720291) 1 NC_017361.1 COG2262 GTPases; hypothetical protein 720291 12349617 HPSA_03500 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771306.1 718198 R 907239 CDS YP_005771307.1 385222174 12349618 complement(720267..720365) 1 NC_017361.1 hypothetical protein 720365 12349618 HPSA_03505 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771307.1 720267 R 907239 CDS YP_005771308.1 385222175 12349619 complement(720401..721717) 1 NC_017361.1 COG0621 2-methylthioadenine synthetase; putative 2-methylthioadenine synthetase 721717 12349619 HPSA_03510 Helicobacter pylori SouthAfrica7 putative 2-methylthioadenine synthetase YP_005771308.1 720401 R 907239 CDS YP_005771309.1 385222176 12349620 complement(721719..722180) 1 NC_017361.1 COG2236 Predicted phosphoribosyltransferases; putative nucleotide phosphoribosyltransferase 722180 12349620 HPSA_03515 Helicobacter pylori SouthAfrica7 putative nucleotide phosphoribosyltransferase YP_005771309.1 721719 R 907239 CDS YP_005771310.1 385222177 12349621 complement(722189..723298) 1 NC_017361.1 COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; putative aminotransferase 723298 12349621 HPSA_03520 Helicobacter pylori SouthAfrica7 putative aminotransferase YP_005771310.1 722189 R 907239 CDS YP_005771311.1 385222178 12349622 723445..723921 1 NC_017361.1 COG1267 Phosphatidylglycerophosphatase A and related proteins; hypothetical protein 723921 12349622 HPSA_03525 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771311.1 723445 D 907239 CDS YP_005771312.1 385222179 12349623 723998..725041 1 NC_017361.1 COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes; D-alanyl-alanine synthetase A 725041 ddl 12349623 ddl Helicobacter pylori SouthAfrica7 D-alanyl-alanine synthetase A YP_005771312.1 723998 D 907239 CDS YP_005771313.1 385222180 12349624 725041..725766 1 NC_017361.1 COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 725766 12349624 HPSA_03535 Helicobacter pylori SouthAfrica7 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase YP_005771313.1 725041 D 907239 CDS YP_005771314.1 385222181 12349625 725753..727234 1 NC_017361.1 COG0770 UDP-N-acetylmuramyl pentapeptide synthase; D-alanyl-D-alanine-adding enzyme 727234 12349625 HPSA_03540 Helicobacter pylori SouthAfrica7 D-alanyl-D-alanine-adding enzyme YP_005771314.1 725753 D 907239 CDS YP_005771315.1 385222182 12349626 727244..727729 1 NC_017361.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; histidine triad (HIT) family protein 727729 12349626 HPSA_03545 Helicobacter pylori SouthAfrica7 histidine triad (HIT) family protein YP_005771315.1 727244 D 907239 CDS YP_005771316.1 385222183 12349627 727821..728750 1 NC_017361.1 COG0462 Phosphoribosylpyrophosphate synthetase; ribose-phosphate pyrophosphokinase 728750 12349627 HPSA_03550 Helicobacter pylori SouthAfrica7 ribose-phosphate pyrophosphokinase YP_005771316.1 727821 D 907239 CDS YP_005771317.1 385222184 12349629 complement(728811..729953) 1 NC_017361.1 COG0772 Bacterial cell division membrane protein; rod shape-determining protein RodA 729953 12349629 HPSA_03555 Helicobacter pylori SouthAfrica7 rod shape-determining protein RodA YP_005771317.1 728811 R 907239 CDS YP_005771318.1 385222185 12349630 731322..732302 1 NC_017361.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; pseudouridine synthase 732302 12349630 HPSA_03575 Helicobacter pylori SouthAfrica7 pseudouridine synthase YP_005771318.1 731322 D 907239 CDS YP_005771319.1 385222186 12349631 732265..733512 1 NC_017361.1 COG3401 Fibronectin type 3 domain-containing protein; hypothetical protein 733512 12349631 HPSA_03580 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771319.1 732265 D 907239 CDS YP_005771320.1 385222187 12349632 733524..734720 1 NC_017361.1 COG0220 Predicted S-adenosylmethionine-dependent methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 734720 12349632 HPSA_03585 Helicobacter pylori SouthAfrica7 tRNA (guanine-N(7)-)-methyltransferase YP_005771320.1 733524 D 907239 CDS YP_005771321.1 385222188 12349633 734695..735366 1 NC_017361.1 COG1136 ABC-type antimicrobial peptide transport system, ATPase component; cell division protein FtsE 735366 12349633 HPSA_03590 Helicobacter pylori SouthAfrica7 cell division protein FtsE YP_005771321.1 734695 D 907239 CDS YP_005771322.1 385222189 12349634 736151..737353 1 NC_017361.1 COG4942 Membrane-bound metallopeptidase; hypothetical protein 737353 12349634 HPSA_03605 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771322.1 736151 D 907239 CDS YP_005771323.1 385222190 12349635 737439..737816 1 NC_017361.1 COG1334 Uncharacterized flagellar protein FlaG; flagellar protein FlaG 737816 12349635 HPSA_03610 Helicobacter pylori SouthAfrica7 flagellar protein FlaG YP_005771323.1 737439 D 907239 CDS YP_005771324.1 385222191 12349636 737833..739890 1 NC_017361.1 COG1345 Flagellar capping protein; flagellar capping protein 739890 fliD 12349636 fliD Helicobacter pylori SouthAfrica7 flagellar capping protein YP_005771324.1 737833 D 907239 CDS YP_005771325.1 385222192 12349637 739935..740315 1 NC_017361.1 COG1516 Flagellin-specific chaperone FliS; flagellar protein FliS 740315 fliS 12349637 fliS Helicobacter pylori SouthAfrica7 flagellar protein FliS YP_005771325.1 739935 D 907239 CDS YP_005771326.1 385222193 12349638 740302..740541 1 NC_017361.1 hypothetical protein 740541 12349638 HPSA_03625 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771326.1 740302 D 907239 CDS YP_005771327.1 385222194 12349639 740594..741265 1 NC_017361.1 COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1; hypothetical protein 741265 12349639 HPSA_03630 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771327.1 740594 D 907239 CDS YP_005771328.1 385222195 12349640 741267..741413 1 NC_017361.1 hypothetical protein 741413 12349640 HPSA_03635 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771328.1 741267 D 907239 CDS YP_005771329.1 385222196 12349641 741417..742295 1 NC_017361.1 COG0388 Predicted amidohydrolase; carbon-nitrogen hydrolase 742295 12349641 HPSA_03640 Helicobacter pylori SouthAfrica7 carbon-nitrogen hydrolase YP_005771329.1 741417 D 907239 CDS YP_005771330.1 385222197 12349642 742419..743732 1 NC_017361.1 COG2056 Predicted permease; hypothetical protein 743732 12349642 HPSA_03645 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771330.1 742419 D 907239 CDS YP_005771331.1 385222198 12349643 743795..745048 1 NC_017361.1 COG0534 Na+-driven multidrug efflux pump; hypothetical protein 745048 12349643 HPSA_03650 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771331.1 743795 D 907239 CDS YP_005771332.1 385222199 12349644 complement(745055..746566) 1 NC_017361.1 COG1418 Predicted HD superfamily hydrolase; phosphodiesterase 746566 12349644 HPSA_03655 Helicobacter pylori SouthAfrica7 phosphodiesterase YP_005771332.1 745055 R 907239 CDS YP_005771333.1 385222200 12349645 complement(746544..747185) 1 NC_017361.1 COG0212 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein 747185 12349645 HPSA_03660 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771333.1 746544 R 907239 CDS YP_005771334.1 385222201 12349646 747310..747861 1 NC_017361.1 hypothetical protein 747861 12349646 HPSA_03665 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771334.1 747310 D 907239 CDS YP_005771335.1 385222202 12349647 747867..748748 1 NC_017361.1 COG0552 Signal recognition particle GTPase; signal recognition particle receptor 748748 12349647 HPSA_03670 Helicobacter pylori SouthAfrica7 signal recognition particle receptor YP_005771335.1 747867 D 907239 CDS YP_005771336.1 385222203 12349648 complement(748841..749161) 1 NC_017361.1 COG0727 Predicted Fe-S-cluster oxidoreductase; hypothetical protein 749161 12349648 HPSA_03675 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771336.1 748841 R 907239 CDS YP_005771337.1 385222204 12349649 complement(749202..750194) 1 NC_017361.1 hypothetical protein 750194 12349649 HPSA_03680 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771337.1 749202 R 907239 CDS YP_005771338.1 385222205 12349650 complement(750205..751749) 1 NC_017361.1 hypothetical protein 751749 12349650 HPSA_03685 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771338.1 750205 R 907239 CDS YP_005771339.1 385222206 12349651 complement(751991..752956) 1 NC_017361.1 COG2896 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein A 752956 moaA 12349651 moaA Helicobacter pylori SouthAfrica7 molybdenum cofactor biosynthesis protein A YP_005771339.1 751991 R 907239 CDS YP_005771340.1 385222207 12349652 753044..753649 1 NC_017361.1 COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 753649 12349652 HPSA_03695 Helicobacter pylori SouthAfrica7 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_005771340.1 753044 D 907239 CDS YP_005771341.1 385222208 12349653 753642..754718 1 NC_017361.1 COG1377 Flagellar biosynthesis pathway, component FlhB; flagellar biosynthesis protein FlhB 754718 flhB 12349653 flhB Helicobacter pylori SouthAfrica7 flagellar biosynthesis protein FlhB YP_005771341.1 753642 D 907239 CDS YP_005771342.1 385222209 12349654 complement(754807..755544) 1 NC_017361.1 hypothetical protein 755544 12349654 HPSA_03705 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771342.1 754807 R 907239 CDS YP_005771343.1 385222210 12349655 complement(755563..756912) 1 NC_017361.1 COG0860 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 756912 12349655 HPSA_03710 Helicobacter pylori SouthAfrica7 N-acetylmuramoyl-L-alanine amidase YP_005771343.1 755563 R 907239 CDS YP_005771344.1 385222211 12349656 complement(756919..758010) 1 NC_017361.1 COG2070 Dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 758010 12349656 HPSA_03715 Helicobacter pylori SouthAfrica7 2-nitropropane dioxygenase YP_005771344.1 756919 R 907239 CDS YP_005771345.1 385222212 12349657 complement(758027..759235) 1 NC_017361.1 COG0162 Tyrosyl-tRNA synthetase; tyrosyl-tRNA synthetase 759235 12349657 HPSA_03720 Helicobacter pylori SouthAfrica7 tyrosyl-tRNA synthetase YP_005771345.1 758027 R 907239 CDS YP_005771346.1 385222213 12349658 complement(759258..761585) 1 NC_017361.1 COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 761585 12349658 HPSA_03725 Helicobacter pylori SouthAfrica7 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase YP_005771346.1 759258 R 907239 CDS YP_005771347.1 385222214 12349659 complement(761572..761796) 1 NC_017361.1 COG1758 DNA-directed RNA polymerase, subunit K/omega; DNA-directed RNA polymerase subunit omega 761796 12349659 HPSA_03730 Helicobacter pylori SouthAfrica7 DNA-directed RNA polymerase subunit omega YP_005771347.1 761572 R 907239 CDS YP_005771348.1 385222215 12349660 complement(762051..762773) 1 NC_017361.1 COG0528 Uridylate kinase; uridylate kinase 762773 pyrH 12349660 pyrH Helicobacter pylori SouthAfrica7 uridylate kinase YP_005771348.1 762051 R 907239 CDS YP_005771349.1 385222216 12349661 complement(762872..763555) 1 NC_017361.1 COG1427 Predicted periplasmic solute-binding protein; hypothetical protein 763555 12349661 HPSA_03740 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771349.1 762872 R 907239 CDS YP_005771350.1 385222217 12349662 763687..766245 1 NC_017361.1 COG1049 Aconitase B; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 766245 12349662 HPSA_03745 Helicobacter pylori SouthAfrica7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_005771350.1 763687 D 907239 CDS YP_005771351.1 385222218 12349663 766316..766582 1 NC_017361.1 hypothetical protein 766582 12349663 HPSA_03750 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771351.1 766316 D 907239 CDS YP_005771352.1 385222219 12349664 766832..768130 1 NC_017361.1 hypothetical protein 768130 12349664 HPSA_03755 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771352.1 766832 D 907239 CDS YP_005771353.1 385222220 12349665 768224..769591 1 NC_017361.1 hypothetical protein 769591 12349665 HPSA_03760 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771353.1 768224 D 907239 CDS YP_005771354.1 385222221 12349666 complement(769599..770126) 1 NC_017361.1 COG5022 Myosin heavy chain; hypothetical protein 770126 12349666 HPSA_03765 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771354.1 769599 R 907239 CDS YP_005771355.1 385222222 12349667 complement(770611..771165) 1 NC_017361.1 COG2834 Outer membrane lipoprotein-sorting protein; outer-membrane lipoprotein carrier protein 771165 lolA 12349667 lolA Helicobacter pylori SouthAfrica7 outer-membrane lipoprotein carrier protein YP_005771355.1 770611 R 907239 CDS YP_005771356.1 385222223 12349668 771312..773909 1 NC_017361.1 COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase); preprotein translocase subunit SecA 773909 12349668 HPSA_03775 Helicobacter pylori SouthAfrica7 preprotein translocase subunit SecA YP_005771356.1 771312 D 907239 CDS YP_005771357.1 385222224 12349669 773899..775131 1 NC_017361.1 COG4591 ABC-type transport system, involved in lipoprotein release, permease component; lipoprotein release system transmembrane protein 775131 12349669 HPSA_03780 Helicobacter pylori SouthAfrica7 lipoprotein release system transmembrane protein YP_005771357.1 773899 D 907239 CDS YP_005771358.1 385222225 12349670 775411..776910 1 NC_017361.1 outer membrane protein HofF 776910 12349670 HPSA_03785 Helicobacter pylori SouthAfrica7 outer membrane protein HofF YP_005771358.1 775411 D 907239 CDS YP_005771359.1 385222226 12349671 complement(777094..777258) 1 NC_017361.1 hypothetical protein 777258 12349671 HPSA_03790 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771359.1 777094 R 907239 CDS YP_005771360.1 385222227 12349672 complement(778153..780213) 1 NC_017361.1 COG2217 Cation transport ATPase; putative heavy-metal cation-transporting P-type ATPase 780213 12349672 HPSA_03805 Helicobacter pylori SouthAfrica7 putative heavy-metal cation-transporting P-type ATPase YP_005771360.1 778153 R 907239 CDS YP_005771361.1 385222228 12349673 complement(780237..781757) 1 NC_017361.1 COG0606 Predicted ATPase with chaperone activity; sigma-54 interacting protein 781757 12349673 HPSA_03810 Helicobacter pylori SouthAfrica7 sigma-54 interacting protein YP_005771361.1 780237 R 907239 CDS YP_005771362.1 385222229 12349674 complement(781763..782287) 1 NC_017361.1 COG0242 N-formylmethionyl-tRNA deformylase; peptide deformylase 782287 def 12349674 def Helicobacter pylori SouthAfrica7 peptide deformylase YP_005771362.1 781763 R 907239 CDS YP_005771363.1 385222230 12349675 complement(782292..782879) 1 NC_017361.1 COG0740 Protease subunit of ATP-dependent Clp proteases; ATP-dependent Clp protease proteolytic subunit 782879 clpP 12349675 clpP Helicobacter pylori SouthAfrica7 ATP-dependent Clp protease proteolytic subunit YP_005771363.1 782292 R 907239 CDS YP_005771364.1 385222231 12349676 complement(782899..784254) 1 NC_017361.1 COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); trigger factor 784254 tig 12349676 tig Helicobacter pylori SouthAfrica7 trigger factor YP_005771364.1 782899 R 907239 CDS YP_005771365.1 385222232 12349677 complement(784367..785203) 1 NC_017361.1 outer membrane protein (omp18) 785203 12349677 HPSA_03830 Helicobacter pylori SouthAfrica7 outer membrane protein (omp18) YP_005771365.1 784367 R 907239 CDS YP_005771366.1 385222233 12349678 complement(785225..786007) 1 NC_017361.1 flagellar sheath adhesin 786007 12349678 HPSA_03835 Helicobacter pylori SouthAfrica7 flagellar sheath adhesin YP_005771366.1 785225 R 907239 CDS YP_005771367.1 385222234 12349679 complement(786128..786604) 1 NC_017361.1 COG0315 Molybdenum cofactor biosynthesis enzyme; molybdenum cofactor biosynthesis protein MoaC 786604 moaC 12349679 moaC Helicobacter pylori SouthAfrica7 molybdenum cofactor biosynthesis protein MoaC YP_005771367.1 786128 R 907239 CDS YP_005771368.1 385222235 12349680 complement(786615..787145) 1 NC_017361.1 COG0521 Molybdopterin biosynthesis enzymes; molybdenum cofactor biosynthesis protein MogA 787145 mogA 12349680 mogA Helicobacter pylori SouthAfrica7 molybdenum cofactor biosynthesis protein MogA YP_005771368.1 786615 R 907239 CDS YP_005771369.1 385222236 12349681 complement(787157..787594) 1 NC_017361.1 COG0314 Molybdopterin converting factor, large subunit; molybdopterin converting factor subunit 2 787594 12349681 HPSA_03850 Helicobacter pylori SouthAfrica7 molybdopterin converting factor subunit 2 YP_005771369.1 787157 R 907239 CDS YP_005771370.1 385222237 12349682 complement(787595..787816) 1 NC_017361.1 COG1977 Molybdopterin converting factor, small subunit; molybdopterin converting factor subunit 1 787816 12349682 HPSA_03855 Helicobacter pylori SouthAfrica7 molybdopterin converting factor subunit 1 YP_005771370.1 787595 R 907239 CDS YP_005771371.1 385222238 12349683 complement(787892..788470) 1 NC_017361.1 COG0807 GTP cyclohydrolase II; GTP cyclohydrolase II 788470 ribA 12349683 ribA Helicobacter pylori SouthAfrica7 GTP cyclohydrolase II YP_005771371.1 787892 R 907239 CDS YP_005771372.1 385222239 12349684 complement(788573..788854) 1 NC_017361.1 hypothetical protein 788854 12349684 HPSA_03865 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771372.1 788573 R 907239 CDS YP_005771373.1 385222240 12349685 789811..790056 1 NC_017361.1 hypothetical protein 790056 12349685 HPSA_03870 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771373.1 789811 D 907239 CDS YP_005771374.1 385222241 12349686 complement(790046..791080) 1 NC_017361.1 COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 791080 12349686 HPSA_03875 Helicobacter pylori SouthAfrica7 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_005771374.1 790046 R 907239 CDS YP_005771375.1 385222242 12349687 complement(791291..792142) 1 NC_017361.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; lipooligosaccharide 5G8 epitope biosynthesis-associated protein 792142 12349687 HPSA_03880 Helicobacter pylori SouthAfrica7 lipooligosaccharide 5G8 epitope biosynthesis-associated protein YP_005771375.1 791291 R 907239 CDS YP_005771376.1 385222243 12349688 792224..792844 1 NC_017361.1 COG1451 Predicted metal-dependent hydrolase; metalloprotease 792844 12349688 HPSA_03885 Helicobacter pylori SouthAfrica7 metalloprotease YP_005771376.1 792224 D 907239 CDS YP_005771377.1 385222244 12349689 complement(792855..795227) 1 NC_017361.1 COG4772 Outer membrane receptor for Fe3+-dicitrate; iron complex outermembrane recepter protein 795227 12349689 HPSA_03890 Helicobacter pylori SouthAfrica7 iron complex outermembrane recepter protein YP_005771377.1 792855 R 907239 CDS YP_005771378.1 385222245 12349690 complement(795422..795781) 1 NC_017361.1 COG0736 Phosphopantetheinyl transferase (holo-ACP synthase); 4'-phosphopantetheinyl transferase 795781 acpS 12349690 acpS Helicobacter pylori SouthAfrica7 4'-phosphopantetheinyl transferase YP_005771378.1 795422 R 907239 CDS YP_005771379.1 385222246 12349691 complement(795788..796339) 1 NC_017361.1 COG1580 Flagellar basal body-associated protein; flagellar basal body-associated protein FliL 796339 fliL 12349691 fliL Helicobacter pylori SouthAfrica7 flagellar basal body-associated protein FliL YP_005771379.1 795788 R 907239 CDS YP_005771380.1 385222247 12349692 complement(796348..796950) 1 NC_017361.1 COG0742 N6-adenine-specific methylase; putative N-6 adenine methyltransferase 796950 12349692 HPSA_03905 Helicobacter pylori SouthAfrica7 putative N-6 adenine methyltransferase YP_005771380.1 796348 R 907239 CDS YP_005771381.1 385222248 12349693 complement(796929..797264) 1 NC_017361.1 hypothetical protein 797264 12349693 HPSA_03910 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771381.1 796929 R 907239 CDS YP_005771382.1 385222249 12349694 complement(797401..797508) 1 NC_017361.1 hypothetical protein 797508 12349694 HPSA_03915 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771382.1 797401 R 907239 CDS YP_005771383.1 385222250 12349695 complement(797725..798726) 1 NC_017361.1 COG1565 Uncharacterized conserved protein; hypothetical protein 798726 12349695 HPSA_03920 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771383.1 797725 R 907239 CDS YP_005771384.1 385222251 12349696 798853..799470 1 NC_017361.1 COG0491 Zn-dependent hydrolases, including glyoxylases; hypothetical protein 799470 12349696 HPSA_03925 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771384.1 798853 D 907239 CDS YP_005771385.1 385222252 12349697 799471..800238 1 NC_017361.1 COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2; thiamine biosynthesis protein 800238 12349697 HPSA_03930 Helicobacter pylori SouthAfrica7 thiamine biosynthesis protein YP_005771385.1 799471 D 907239 CDS YP_005771386.1 385222253 12349698 800254..801027 1 NC_017361.1 COG1291 Flagellar motor component; flagellar motor protein MotA 801027 12349698 HPSA_03935 Helicobacter pylori SouthAfrica7 flagellar motor protein MotA YP_005771386.1 800254 D 907239 CDS YP_005771387.1 385222254 12349699 801030..801803 1 NC_017361.1 COG1360 Flagellar motor protein; flagellar motor protein MotB 801803 motB 12349699 motB Helicobacter pylori SouthAfrica7 flagellar motor protein MotB YP_005771387.1 801030 D 907239 CDS YP_005771388.1 385222255 12349700 801809..802246 1 NC_017361.1 hypothetical protein 802246 12349700 HPSA_03945 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771388.1 801809 D 907239 CDS YP_005771389.1 385222256 12349701 802316..803971 1 NC_017361.1 COG1174 ABC-type proline/glycine betaine transport systems, permease component; osmoprotection protein 803971 12349701 HPSA_03950 Helicobacter pylori SouthAfrica7 osmoprotection protein YP_005771389.1 802316 D 907239 CDS YP_005771390.1 385222257 12349702 803974..804624 1 NC_017361.1 COG1125 ABC-type proline/glycine betaine transport systems, ATPase components; osmoprotection ATP-binding protein 804624 12349702 HPSA_03955 Helicobacter pylori SouthAfrica7 osmoprotection ATP-binding protein YP_005771390.1 803974 D 907239 CDS YP_005771391.1 385222258 12349703 complement(804630..804809) 1 NC_017361.1 hypothetical protein 804809 12349703 HPSA_03960 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771391.1 804630 R 907239 CDS YP_005771392.1 385222259 12349704 804864..805262 1 NC_017361.1 hypothetical protein 805262 12349704 HPSA_03965 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771392.1 804864 D 907239 CDS YP_005771393.1 385222260 12349705 805263..807047 1 NC_017361.1 COG0322 Nuclease subunit of the excinuclease complex; excinuclease ABC subunit C 807047 uvrC 12349705 uvrC Helicobacter pylori SouthAfrica7 excinuclease ABC subunit C YP_005771393.1 805263 D 907239 CDS YP_005771394.1 385222261 12349706 807058..808323 1 NC_017361.1 COG0460 Homoserine dehydrogenase; homoserine dehydrogenase 808323 12349706 HPSA_03975 Helicobacter pylori SouthAfrica7 homoserine dehydrogenase YP_005771394.1 807058 D 907239 CDS YP_005771395.1 385222262 12349707 808324..808668 1 NC_017361.1 COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 808668 12349707 HPSA_03980 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771395.1 808324 D 907239 CDS YP_005771396.1 385222263 12349708 808760..809080 1 NC_017361.1 COG0526 Thiol-disulfide isomerase and thioredoxins; thioredoxin 809080 12349708 HPSA_03985 Helicobacter pylori SouthAfrica7 thioredoxin YP_005771396.1 808760 D 907239 CDS YP_005771397.1 385222264 12349709 809086..810021 1 NC_017361.1 COG0492 Thioredoxin reductase; thioredoxin reductase 810021 12349709 HPSA_03990 Helicobacter pylori SouthAfrica7 thioredoxin reductase YP_005771397.1 809086 D 907239 CDS YP_005771398.1 385222265 12349710 810276..810368 1 NC_017361.1 hypothetical protein 810368 12349710 HPSA_03995 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771398.1 810276 D 907239 CDS YP_005771399.1 385222266 12349711 810387..811208 1 NC_017361.1 COG3306 Glycosyltransferase involved in LPS biosynthesis; pbeta-1,4-galactosyltransferase 811208 12349711 HPSA_04000 Helicobacter pylori SouthAfrica7 pbeta-1,4-galactosyltransferase YP_005771399.1 810387 D 907239 CDS YP_005771400.1 385222267 12349712 complement(811427..811675) 1 NC_017361.1 COG0724 RNA-binding proteins (RRM domain); Nucleotide binding protein 811675 12349712 HPSA_04005 Helicobacter pylori SouthAfrica7 Nucleotide binding protein YP_005771400.1 811427 R 907239 CDS YP_005771401.1 385222268 12349713 811829..811984 1 NC_017361.1 hypothetical protein 811984 12349713 HPSA_04010 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771401.1 811829 D 907239 CDS YP_005771402.1 385222269 12349714 complement(811981..812094) 1 NC_017361.1 hypothetical protein 812094 12349714 HPSA_04015 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771402.1 811981 R 907239 CDS YP_005771403.1 385222270 12349715 complement(812389..813069) 1 NC_017361.1 COG0356 F0F1-type ATP synthase, subunit a; F0F1 ATP synthase subunit A 813069 12349715 HPSA_04020 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit A YP_005771403.1 812389 R 907239 CDS YP_005771404.1 385222271 12349716 complement(813191..814636) 1 NC_017361.1 COG0516 IMP dehydrogenase/GMP reductase; inosine 5'-monophosphate dehydrogenase 814636 12349716 HPSA_04025 Helicobacter pylori SouthAfrica7 inosine 5'-monophosphate dehydrogenase YP_005771404.1 813191 R 907239 CDS YP_005771405.1 385222272 12349717 complement(814646..816007) 1 NC_017361.1 COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases; aspartyl/glutamyl-tRNA amidotransferase subunit A 816007 gatA 12349717 gatA Helicobacter pylori SouthAfrica7 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_005771405.1 814646 R 907239 CDS YP_005771406.1 385222273 12349718 complement(816065..816655) 1 NC_017361.1 COG0237 Dephospho-CoA kinase; dephospho-CoA kinase 816655 coaE 12349718 coaE Helicobacter pylori SouthAfrica7 dephospho-CoA kinase YP_005771406.1 816065 R 907239 CDS YP_005771407.1 385222274 12349719 complement(816657..817445) 1 NC_017361.1 COG0421 Spermidine synthase; spermidine synthase 817445 speE 12349719 speE Helicobacter pylori SouthAfrica7 spermidine synthase YP_005771407.1 816657 R 907239 CDS YP_005771408.1 385222275 12349720 complement(817520..818395) 1 NC_017361.1 hypothetical protein 818395 12349720 HPSA_04045 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771408.1 817520 R 907239 CDS YP_005771409.1 385222276 12349721 818472..819854 1 NC_017361.1 COG1160 Predicted GTPases; GTP-binding protein EngA 819854 engA 12349721 engA Helicobacter pylori SouthAfrica7 GTP-binding protein EngA YP_005771409.1 818472 D 907239 CDS YP_005771410.1 385222277 12349722 819996..820280 1 NC_017361.1 COG0776 Bacterial nucleoid DNA-binding protein; DNA-binding protein HU 820280 12349722 HPSA_04055 Helicobacter pylori SouthAfrica7 DNA-binding protein HU YP_005771410.1 819996 D 907239 CDS YP_005771411.1 385222278 12349724 820982..821587 1 NC_017361.1 COG3018 Uncharacterized protein conserved in bacteria; hypothetical protein 821587 12349724 HPSA_04065 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771411.1 820982 D 907239 CDS YP_005771412.1 385222279 12349725 821606..822223 1 NC_017361.1 hypothetical protein 822223 12349725 HPSA_04070 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771412.1 821606 D 907239 CDS YP_005771413.1 385222280 12349726 824004..824987 1 NC_017361.1 COG1086 Predicted nucleoside-diphosphate sugar epimerases; flaA1 protein 824987 12349726 HPSA_04085 Helicobacter pylori SouthAfrica7 flaA1 protein YP_005771413.1 824004 D 907239 CDS YP_005771414.1 385222281 12349727 824984..826261 1 NC_017361.1 COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 826261 12349727 HPSA_04090 Helicobacter pylori SouthAfrica7 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_005771414.1 824984 D 907239 CDS YP_005771415.1 385222282 12349728 826261..826998 1 NC_017361.1 hypothetical protein 826998 12349728 HPSA_04095 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771415.1 826261 D 907239 CDS YP_005771416.1 385222283 12349729 complement(827379..828041) 1 NC_017361.1 COG0352 Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 828041 thiE 12349729 thiE Helicobacter pylori SouthAfrica7 thiamine-phosphate pyrophosphorylase YP_005771416.1 827379 R 907239 CDS YP_005771417.1 385222284 12349730 complement(828034..828843) 1 NC_017361.1 COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; thiamine biosynthesis protein 828843 12349730 HPSA_04105 Helicobacter pylori SouthAfrica7 thiamine biosynthesis protein YP_005771417.1 828034 R 907239 CDS YP_005771418.1 385222285 12349731 complement(828840..829619) 1 NC_017361.1 COG2145 Hydroxyethylthiazole kinase, sugar kinase family; hydroxyethylthiazole kinase 829619 12349731 HPSA_04110 Helicobacter pylori SouthAfrica7 hydroxyethylthiazole kinase YP_005771418.1 828840 R 907239 CDS YP_005771419.1 385222286 12349732 830684..831559 1 NC_017361.1 type II restriction endonuclease 831559 12349732 HPSA_04125 Helicobacter pylori SouthAfrica7 type II restriction endonuclease YP_005771419.1 830684 D 907239 CDS YP_005771420.1 385222287 12349733 831730..832416 1 NC_017361.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 832416 12349733 HPSA_04130 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771420.1 831730 D 907239 CDS YP_005771421.1 385222288 12349734 complement(832439..833401) 1 NC_017361.1 COG2958 Uncharacterized protein conserved in bacteria; Excinuclease ATPase subunit 833401 12349734 HPSA_04135 Helicobacter pylori SouthAfrica7 Excinuclease ATPase subunit YP_005771421.1 832439 R 907239 CDS YP_005771422.1 385222289 12349735 complement(833398..834999) 1 NC_017361.1 COG0488 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter ATP-binding protein 834999 12349735 HPSA_04140 Helicobacter pylori SouthAfrica7 ABC transporter ATP-binding protein YP_005771422.1 833398 R 907239 CDS YP_005771423.1 385222290 12349736 835253..836230 1 NC_017361.1 COG0516 IMP dehydrogenase/GMP reductase; guanosine 5'-monophosphate oxidoreductase 836230 12349736 HPSA_04145 Helicobacter pylori SouthAfrica7 guanosine 5'-monophosphate oxidoreductase YP_005771423.1 835253 D 907239 CDS YP_005771424.1 385222291 12349737 complement(836387..836965) 1 NC_017361.1 COG0279 Phosphoheptose isomerase; phosphoheptose isomerase 836965 12349737 HPSA_04150 Helicobacter pylori SouthAfrica7 phosphoheptose isomerase YP_005771424.1 836387 R 907239 CDS YP_005771425.1 385222292 12349738 complement(836958..838349) 1 NC_017361.1 COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase; ADP-heptose synthase 838349 12349738 HPSA_04155 Helicobacter pylori SouthAfrica7 ADP-heptose synthase YP_005771425.1 836958 R 907239 CDS YP_005771426.1 385222293 12349739 complement(838346..839338) 1 NC_017361.1 COG0451 Nucleoside-diphosphate-sugar epimerases; ADP-glyceromanno-heptose 6-epimerase 839338 12349739 HPSA_04160 Helicobacter pylori SouthAfrica7 ADP-glyceromanno-heptose 6-epimerase YP_005771426.1 838346 R 907239 CDS YP_005771427.1 385222294 12349740 complement(839347..839868) 1 NC_017361.1 COG0241 Histidinol phosphatase and related phosphatases; putative histinol phosphatase 839868 12349740 HPSA_04165 Helicobacter pylori SouthAfrica7 putative histinol phosphatase YP_005771427.1 839347 R 907239 CDS YP_005771428.1 385222295 12349741 complement(839858..840610) 1 NC_017361.1 COG2836 Uncharacterized conserved protein; hypothetical protein 840610 12349741 HPSA_04170 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771428.1 839858 R 907239 CDS YP_005771429.1 385222296 12349742 complement(840601..841272) 1 NC_017361.1 COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor; pantothenate kinase 841272 12349742 HPSA_04175 Helicobacter pylori SouthAfrica7 pantothenate kinase YP_005771429.1 840601 R 907239 CDS YP_005771430.1 385222297 12349743 complement(841277..842863) 1 NC_017361.1 hypothetical protein 842863 12349743 HPSA_04180 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771430.1 841277 R 907239 CDS YP_005771431.1 385222298 12349744 complement(842868..843524) 1 NC_017361.1 hypothetical protein 843524 12349744 HPSA_04185 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771431.1 842868 R 907239 CDS YP_005771432.1 385222299 12349745 complement(843521..843958) 1 NC_017361.1 COG0756 dUTPase; deoxyuridine 5'-triphosphate nucleotidohydrolase 843958 dut 12349745 dut Helicobacter pylori SouthAfrica7 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_005771432.1 843521 R 907239 CDS YP_005771433.1 385222300 12349746 complement(843948..844442) 1 NC_017361.1 COG0782 Transcription elongation factor; transcription elongation factor GreA 844442 greA 12349746 greA Helicobacter pylori SouthAfrica7 transcription elongation factor GreA YP_005771433.1 843948 R 907239 CDS YP_005771434.1 385222301 12349747 complement(844483..845565) 1 NC_017361.1 COG0763 Lipid A disaccharide synthetase; ipid-A-disaccharide synthase 845565 12349747 HPSA_04200 Helicobacter pylori SouthAfrica7 ipid-A-disaccharide synthase YP_005771434.1 844483 R 907239 CDS YP_005771435.1 385222302 12349748 complement(845565..846023) 1 NC_017361.1 hypothetical protein 846023 12349748 HPSA_04205 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771435.1 845565 R 907239 CDS YP_005771436.1 385222303 12349749 complement(846030..846383) 1 NC_017361.1 COG0375 Zn finger protein HypA/HybF (possibly regulating hydrogenase expression); hydrogenase nickel incorporation protein 846383 hypA 12349749 hypA Helicobacter pylori SouthAfrica7 hydrogenase nickel incorporation protein YP_005771436.1 846030 R 907239 CDS YP_005771437.1 385222304 12349750 complement(846441..848597) 1 NC_017361.1 COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 848597 flgE 12349750 flgE Helicobacter pylori SouthAfrica7 flagellar hook protein FlgE YP_005771437.1 846441 R 907239 CDS YP_005771438.1 385222305 12349751 848629..848799 1 NC_017361.1 hypothetical protein 848799 12349751 HPSA_04220 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771438.1 848629 D 907239 CDS YP_005771439.1 385222306 12349752 complement(848814..849548) 1 NC_017361.1 COG2134 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol pyrophosphatase 849548 12349752 HPSA_04225 Helicobacter pylori SouthAfrica7 CDP-diacylglycerol pyrophosphatase YP_005771439.1 848814 R 907239 CDS YP_005771440.1 385222307 12349753 849875..850204 1 NC_017361.1 COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism; alkylphosphonate uptake protein 850204 12349753 HPSA_04230 Helicobacter pylori SouthAfrica7 alkylphosphonate uptake protein YP_005771440.1 849875 D 907239 CDS YP_005771441.1 385222308 12349754 complement(850244..850459) 1 NC_017361.1 hypothetical protein 850459 12349754 HPSA_04235 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771441.1 850244 R 907239 CDS YP_005771442.1 385222309 12349755 complement(850543..851418) 1 NC_017361.1 hypothetical protein 851418 12349755 HPSA_04240 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771442.1 850543 R 907239 CDS YP_005771443.1 385222310 12349756 complement(851564..853081) 1 NC_017361.1 COG0753 Catalase; catalase 853081 12349756 HPSA_04245 Helicobacter pylori SouthAfrica7 catalase YP_005771443.1 851564 R 907239 CDS YP_005771444.1 385222311 12349757 853401..855776 1 NC_017361.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 855776 12349757 HPSA_04250 Helicobacter pylori SouthAfrica7 iron-regulated outer membrane protein YP_005771444.1 853401 D 907239 CDS YP_005771445.1 385222312 12349758 complement(855777..856250) 1 NC_017361.1 COG0817 Holliday junction resolvasome, endonuclease subunit; Holliday junction resolvase 856250 ruvC 12349758 ruvC Helicobacter pylori SouthAfrica7 Holliday junction resolvase YP_005771445.1 855777 R 907239 CDS YP_005771446.1 385222313 12349759 856374..857099 1 NC_017361.1 COG1432 Uncharacterized conserved protein; hypothetical protein 857099 12349759 HPSA_04260 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771446.1 856374 D 907239 CDS YP_005771447.1 385222314 12349760 complement(857246..857392) 1 NC_017361.1 hypothetical protein 857392 12349760 HPSA_04265 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771447.1 857246 R 907239 CDS YP_005771448.1 385222315 12349761 complement(857911..858462) 1 NC_017361.1 COG0632 Holliday junction resolvasome, DNA-binding subunit; Holliday junction DNA helicase RuvA 858462 ruvA 12349761 ruvA Helicobacter pylori SouthAfrica7 Holliday junction DNA helicase RuvA YP_005771448.1 857911 R 907239 CDS YP_005771449.1 385222316 12349762 complement(858492..860327) 1 NC_017361.1 hypothetical protein 860327 12349762 HPSA_04275 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771449.1 858492 R 907239 CDS YP_005771450.1 385222317 12349763 860421..861881 1 NC_017361.1 COG0728 Uncharacterized membrane protein, putative virulence factor; virulence factor MviN 861881 12349763 HPSA_04280 Helicobacter pylori SouthAfrica7 virulence factor MviN YP_005771450.1 860421 D 907239 CDS YP_005771451.1 385222318 12349764 861882..863279 1 NC_017361.1 COG0215 Cysteinyl-tRNA synthetase; cysteinyl-tRNA synthetase 863279 cysS 12349764 cysS Helicobacter pylori SouthAfrica7 cysteinyl-tRNA synthetase YP_005771451.1 861882 D 907239 CDS YP_005771452.1 385222319 12349765 complement(867621..868682) 1 NC_017361.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein 868682 12349765 HPSA_04300 Helicobacter pylori SouthAfrica7 putative lipopolysaccharide biosynthesis protein YP_005771452.1 867621 R 907239 CDS YP_005771453.1 385222320 12349766 complement(868800..869567) 1 NC_017361.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; iron(III) dicitrate transporter, ATP-binding protein 869567 12349766 HPSA_04305 Helicobacter pylori SouthAfrica7 iron(III) dicitrate transporter, ATP-binding protein YP_005771453.1 868800 R 907239 CDS YP_005771454.1 385222321 12349767 complement(869567..870547) 1 NC_017361.1 COG0609 ABC-type Fe3+-siderophore transport system, permease component; iron(III) ABC transporter permease 870547 12349767 HPSA_04310 Helicobacter pylori SouthAfrica7 iron(III) ABC transporter permease YP_005771454.1 869567 R 907239 CDS YP_005771455.1 385222322 12349768 complement(870540..871394) 1 NC_017361.1 COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); short-chain oxidoreductase 871394 12349768 HPSA_04315 Helicobacter pylori SouthAfrica7 short-chain oxidoreductase YP_005771455.1 870540 R 907239 CDS YP_005771456.1 385222323 12349769 871534..872058 1 NC_017361.1 COG1607 Acyl-CoA hydrolase; hypothetical protein 872058 12349769 HPSA_04320 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771456.1 871534 D 907239 CDS YP_005771457.1 385222324 12349770 complement(872254..872538) 1 NC_017361.1 COG3309 Uncharacterized virulence-associated protein D; virulence associated protein D (vapD) 872538 12349770 HPSA_04325 Helicobacter pylori SouthAfrica7 virulence associated protein D (vapD) YP_005771457.1 872254 R 907239 CDS YP_005771458.1 385222325 12349771 complement(872519..872899) 1 NC_017361.1 hypothetical protein 872899 12349771 HPSA_04330 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771458.1 872519 R 907239 CDS YP_005771459.1 385222326 12349772 complement(873157..873345) 1 NC_017361.1 hypothetical protein 873345 12349772 HPSA_04335 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771459.1 873157 R 907239 CDS YP_005771460.1 385222327 12349773 complement(873602..875827) 1 NC_017361.1 outer membrane protein BabA 875827 12349773 HPSA_04340 Helicobacter pylori SouthAfrica7 outer membrane protein BabA YP_005771460.1 873602 R 907239 CDS YP_005771461.1 385222328 12349774 875826..875924 1 NC_017361.1 hypothetical protein 875924 12349774 HPSA_04345 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771461.1 875826 D 907239 CDS YP_005771462.1 385222329 12349775 875938..876120 1 NC_017361.1 hypothetical protein 876120 12349775 HPSA_04350 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771462.1 875938 D 907239 CDS YP_005771463.1 385222330 12349778 complement(877039..878151) 1 NC_017361.1 COG0409 Hydrogenase maturation factor; hydrogenase expression/formation protein HypD 878151 12349778 HPSA_04360 Helicobacter pylori SouthAfrica7 hydrogenase expression/formation protein HypD YP_005771463.1 877039 R 907239 CDS YP_005771464.1 385222331 12349779 complement(878166..878402) 1 NC_017361.1 COG0298 Hydrogenase maturation factor; hydrogenase expression/formation protein 878402 12349779 HPSA_04365 Helicobacter pylori SouthAfrica7 hydrogenase expression/formation protein YP_005771464.1 878166 R 907239 CDS YP_005771465.1 385222332 12349780 complement(878402..879130) 1 NC_017361.1 COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase; hydrogenase/urease nickel incorporation protein hypB 879130 12349780 HPSA_04370 Helicobacter pylori SouthAfrica7 hydrogenase/urease nickel incorporation protein hypB YP_005771465.1 878402 R 907239 CDS YP_005771466.1 385222333 12349781 complement(879242..879364) 1 NC_017361.1 hypothetical protein 879364 12349781 HPSA_04375 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771466.1 879242 R 907239 CDS YP_005771467.1 385222334 12349782 complement(879375..879674) 1 NC_017361.1 COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain; hypothetical protein 879674 12349782 HPSA_04380 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771467.1 879375 R 907239 CDS YP_005771468.1 385222335 12349783 complement(879661..880884) 1 NC_017361.1 COG0282 Acetate kinase; acetate kinase 880884 12349783 HPSA_04385 Helicobacter pylori SouthAfrica7 acetate kinase YP_005771468.1 879661 R 907239 CDS YP_005771469.1 385222336 12349784 complement(880901..882451) 1 NC_017361.1 COG0857 BioD-like N-terminal domain of phosphotransacetylase; phosphotransacetylase 882451 12349784 HPSA_04390 Helicobacter pylori SouthAfrica7 phosphotransacetylase YP_005771469.1 880901 R 907239 CDS YP_005771470.1 385222337 12349785 882630..884177 1 NC_017361.1 hypothetical protein 884177 12349785 HPSA_04395 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771470.1 882630 D 907239 CDS YP_005771471.1 385222338 12349786 884228..885376 1 NC_017361.1 COG1843 Flagellar hook capping protein; flagellar basal body rod modification protein 885376 flgD 12349786 flgD Helicobacter pylori SouthAfrica7 flagellar basal body rod modification protein YP_005771471.1 884228 D 907239 CDS YP_005771472.1 385222339 12349787 885373..887190 1 NC_017361.1 COG1749 Flagellar hook protein FlgE; flagellar hook protein FlgE 887190 flgE 12349787 flgE Helicobacter pylori SouthAfrica7 flagellar hook protein FlgE YP_005771472.1 885373 D 907239 CDS YP_005771473.1 385222340 12349788 887242..887823 1 NC_017361.1 restriction endonuclease 887823 12349788 HPSA_04410 Helicobacter pylori SouthAfrica7 restriction endonuclease YP_005771473.1 887242 D 907239 CDS YP_005771474.1 385222341 12349789 887833..888972 1 NC_017361.1 COG0827 Adenine-specific DNA methylase; site specific DNA-methyltransferase 888972 12349789 HPSA_04415 Helicobacter pylori SouthAfrica7 site specific DNA-methyltransferase YP_005771474.1 887833 D 907239 CDS YP_005771475.1 385222342 12349790 888982..891000 1 NC_017361.1 COG0210 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase 891000 12349790 HPSA_04420 Helicobacter pylori SouthAfrica7 ATP-dependent DNA helicase YP_005771475.1 888982 D 907239 CDS YP_005771476.1 385222343 12349791 892157..893710 1 NC_017361.1 outer membrane protein HopC 893710 12349791 HPSA_04425 Helicobacter pylori SouthAfrica7 outer membrane protein HopC YP_005771476.1 892157 D 907239 CDS YP_005771477.1 385222344 12349792 893732..895333 1 NC_017361.1 Outer membrane protein/porin 895333 12349792 HPSA_04430 Helicobacter pylori SouthAfrica7 Outer membrane protein/porin YP_005771477.1 893732 D 907239 CDS YP_005771478.1 385222345 12349793 complement(896512..898056) 1 NC_017361.1 outer membrane protein HopG 898056 12349793 HPSA_04435 Helicobacter pylori SouthAfrica7 outer membrane protein HopG YP_005771478.1 896512 R 907239 CDS YP_005771479.1 385222346 12349794 complement(898370..900811) 1 NC_017361.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 900811 12349794 HPSA_04440 Helicobacter pylori SouthAfrica7 iron-regulated outer membrane protein YP_005771479.1 898370 R 907239 CDS YP_005771480.1 385222347 12349795 complement(900998..901429) 1 NC_017361.1 COG0009 Putative translation factor (SUA5); hypothetical protein 901429 12349795 HPSA_04445 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771480.1 900998 R 907239 CDS YP_005771481.1 385222348 12349796 complement(901434..904691) 1 NC_017361.1 COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl phosphate synthase large subunit 904691 carB 12349796 carB Helicobacter pylori SouthAfrica7 carbamoyl phosphate synthase large subunit YP_005771481.1 901434 R 907239 CDS YP_005771482.1 385222349 12349797 complement(904790..905482) 1 NC_017361.1 COG0670 Integral membrane protein, interacts with FtsH; hypothetical protein 905482 12349797 HPSA_04455 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771482.1 904790 R 907239 CDS YP_005771483.1 385222350 12349798 905629..906627 1 NC_017361.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 906627 12349798 HPSA_04460 Helicobacter pylori SouthAfrica7 glyceraldehyde-3-phosphate dehydrogenase YP_005771483.1 905629 D 907239 CDS YP_005771484.1 385222351 12349799 906707..913870 1 NC_017361.1 hypothetical protein 913870 12349799 HPSA_04465 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771484.1 906707 D 907239 CDS YP_005771485.1 385222352 12349800 913860..915035 1 NC_017361.1 hypothetical protein 915035 12349800 HPSA_04470 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771485.1 913860 D 907239 CDS YP_005771486.1 385222353 12349801 complement(915095..915301) 1 NC_017361.1 COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog; 4-oxalocrotonate tautomerase 915301 12349801 HPSA_04475 Helicobacter pylori SouthAfrica7 4-oxalocrotonate tautomerase YP_005771486.1 915095 R 907239 CDS YP_005771487.1 385222354 12349802 915417..915998 1 NC_017361.1 COG0353 Recombinational DNA repair protein (RecF pathway); recombination protein RecR 915998 recR 12349802 recR Helicobacter pylori SouthAfrica7 recombination protein RecR YP_005771487.1 915417 D 907239 CDS YP_005771488.1 385222355 12349803 915995..917140 1 NC_017361.1 COG0585 Uncharacterized conserved protein; tRNA pseudouridine synthase D 917140 truD 12349803 truD Helicobacter pylori SouthAfrica7 tRNA pseudouridine synthase D YP_005771488.1 915995 D 907239 CDS YP_005771489.1 385222356 12349804 917130..918059 1 NC_017361.1 COG0501 Zn-dependent protease with chaperone function; heat shock protein HtpX 918059 12349804 HPSA_04490 Helicobacter pylori SouthAfrica7 heat shock protein HtpX YP_005771489.1 917130 D 907239 CDS YP_005771490.1 385222357 12349805 918060..918602 1 NC_017361.1 COG0302 GTP cyclohydrolase I; GTP cyclohydrolase I 918602 folE 12349805 folE Helicobacter pylori SouthAfrica7 GTP cyclohydrolase I YP_005771490.1 918060 D 907239 CDS YP_005771491.1 385222358 12349806 918618..919529 1 NC_017361.1 COG0142 Geranylgeranyl pyrophosphate synthase; geranyltranstransferase 919529 12349806 HPSA_04500 Helicobacter pylori SouthAfrica7 geranyltranstransferase YP_005771491.1 918618 D 907239 CDS YP_005771492.1 385222359 12349807 919526..920329 1 NC_017361.1 COG0496 Predicted acid phosphatase; stationary phase survival protein SurE 920329 surE 12349807 surE Helicobacter pylori SouthAfrica7 stationary phase survival protein SurE YP_005771492.1 919526 D 907239 CDS YP_005771493.1 385222360 12349808 920326..920985 1 NC_017361.1 hypothetical protein 920985 12349808 HPSA_04510 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771493.1 920326 D 907239 CDS YP_005771494.1 385222361 12349809 920989..921591 1 NC_017361.1 COG0720 6-pyruvoyl-tetrahydropterin synthase; putative 6-pyruvoyl tetrahydrobiopterin synthase 921591 12349809 HPSA_04515 Helicobacter pylori SouthAfrica7 putative 6-pyruvoyl tetrahydrobiopterin synthase YP_005771494.1 920989 D 907239 CDS YP_005771495.1 385222362 12349810 921591..922346 1 NC_017361.1 COG0602 Organic radical activating enzymes; hypothetical protein 922346 12349810 HPSA_04520 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771495.1 921591 D 907239 CDS YP_005771496.1 385222363 12349811 922449..922934 1 NC_017361.1 COG0454 Histone acetyltransferase HPA2 and related acetyltransferases; hypothetical protein 922934 12349811 HPSA_04525 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771496.1 922449 D 907239 CDS YP_005771497.1 385222364 12349812 complement(923188..924567) 1 NC_017361.1 COG1479 Uncharacterized conserved protein; hypothetical protein 924567 12349812 HPSA_04530 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771497.1 923188 R 907239 CDS YP_005771498.1 385222365 12349813 complement(924755..924889) 1 NC_017361.1 hypothetical protein 924889 12349813 HPSA_04535 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771498.1 924755 R 907239 CDS YP_005771499.1 385222366 12349814 complement(924961..925674) 1 NC_017361.1 COG0765 ABC-type amino acid transport system, permease component; amino acid ABC transporter permease 925674 12349814 HPSA_04540 Helicobacter pylori SouthAfrica7 amino acid ABC transporter permease YP_005771499.1 924961 R 907239 CDS YP_005771500.1 385222367 12349815 complement(925658..926425) 1 NC_017361.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; putative polar amino acid transport system substrate-binding protein 926425 12349815 HPSA_04545 Helicobacter pylori SouthAfrica7 putative polar amino acid transport system substrate-binding protein YP_005771500.1 925658 R 907239 CDS YP_005771501.1 385222368 12349816 complement(926491..927624) 1 NC_017361.1 COG0787 Alanine racemase; alanine racemase 927624 12349816 HPSA_04550 Helicobacter pylori SouthAfrica7 alanine racemase YP_005771501.1 926491 R 907239 CDS YP_005771502.1 385222369 12349817 complement(927631..928983) 1 NC_017361.1 COG1115 Na+/alanine symporter; putative amino acid transporter; putative membrane protein 928983 12349817 HPSA_04555 Helicobacter pylori SouthAfrica7 putative amino acid transporter; putative membrane protein YP_005771502.1 927631 R 907239 CDS YP_005771503.1 385222370 12349818 complement(929022..930254) 1 NC_017361.1 COG0665 Glycine/D-amino acid oxidases (deaminating); D-amino acid dehydrogenase 930254 12349818 HPSA_04560 Helicobacter pylori SouthAfrica7 D-amino acid dehydrogenase YP_005771503.1 929022 R 907239 CDS YP_005771504.1 385222371 12349819 complement(930280..930657) 1 NC_017361.1 COG0251 Putative translation initiation inhibitor, yjgF family; translation initiation inhibitor 930657 12349819 HPSA_04565 Helicobacter pylori SouthAfrica7 translation initiation inhibitor YP_005771504.1 930280 R 907239 CDS YP_005771505.1 385222372 12349820 930727..930891 1 NC_017361.1 hypothetical protein 930891 12349820 HPSA_04570 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771505.1 930727 D 907239 CDS YP_005771506.1 385222373 12349822 931266..931568 1 NC_017361.1 protein tRNA-associated locus protein 931568 12349822 HPSA_04575 Helicobacter pylori SouthAfrica7 protein tRNA-associated locus protein YP_005771506.1 931266 D 907239 CDS YP_005771507.1 385222374 12349826 932103..933593 1 NC_017361.1 COG1757 Na+/H+ antiporter; hypothetical protein 933593 12349826 HPSA_04580 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771507.1 932103 D 907239 CDS YP_005771508.1 385222375 12349827 933868..934230 1 NC_017361.1 hypothetical protein 934230 12349827 HPSA_04585 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771508.1 933868 D 907239 CDS YP_005771509.1 385222376 12349828 934790..935866 1 NC_017361.1 COG0582 Integrase; integrase-recombinase protein 935866 12349828 HPSA_04590 Helicobacter pylori SouthAfrica7 integrase-recombinase protein YP_005771509.1 934790 D 907239 CDS YP_005771510.1 385222377 12349829 complement(935930..937132) 1 NC_017361.1 hypothetical protein 937132 12349829 HPSA_04595 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771510.1 935930 R 907239 CDS YP_005771511.1 385222378 12349830 complement(937132..938517) 1 NC_017361.1 hypothetical protein 938517 12349830 HPSA_04600 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771511.1 937132 R 907239 CDS YP_005771512.1 385222379 12349831 complement(938527..940722) 1 NC_017361.1 hypothetical protein 940722 12349831 HPSA_04605 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771512.1 938527 R 907239 CDS YP_005771513.1 385222380 12349832 complement(942095..943102) 1 NC_017361.1 hypothetical protein 943102 12349832 HPSA_04620 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771513.1 942095 R 907239 CDS YP_005771514.1 385222381 12349833 943299..951707 1 NC_017361.1 COG0827 Adenine-specific DNA methylase; hypothetical protein 951707 12349833 HPSA_04625 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771514.1 943299 D 907239 CDS YP_005771515.1 385222382 12349834 951974..952630 1 NC_017361.1 COG1192 ATPases involved in chromosome partitioning; PARA protein 952630 12349834 HPSA_04630 Helicobacter pylori SouthAfrica7 PARA protein YP_005771515.1 951974 D 907239 CDS YP_005771516.1 385222383 12349835 952709..952993 1 NC_017361.1 hypothetical protein 952993 12349835 HPSA_04635 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771516.1 952709 D 907239 CDS YP_005771517.1 385222384 12349836 953020..954192 1 NC_017361.1 hypothetical protein 954192 12349836 HPSA_04640 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771517.1 953020 D 907239 CDS YP_005771518.1 385222385 12349837 complement(954212..956122) 1 NC_017361.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase); hypothetical protein 956122 12349837 HPSA_04645 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771518.1 954212 R 907239 CDS YP_005771519.1 385222386 12349838 956537..956851 1 NC_017361.1 hypothetical protein 956851 12349838 HPSA_04650 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771519.1 956537 D 907239 CDS YP_005771520.1 385222387 12349839 956844..957125 1 NC_017361.1 COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein 957125 12349839 HPSA_04655 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771520.1 956844 D 907239 CDS YP_005771521.1 385222388 12349840 complement(957262..959007) 1 NC_017361.1 COG3505 Type IV secretory pathway, VirD4 components; VirD4 coupling protein 959007 12349840 HPSA_04660 Helicobacter pylori SouthAfrica7 VirD4 coupling protein YP_005771521.1 957262 R 907239 CDS YP_005771522.1 385222389 12349841 complement(959008..959565) 1 NC_017361.1 hypothetical protein 959565 12349841 HPSA_04665 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771522.1 959008 R 907239 CDS YP_005771523.1 385222390 12349842 complement(959566..959856) 1 NC_017361.1 hypothetical protein 959856 12349842 HPSA_04670 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771523.1 959566 R 907239 CDS YP_005771524.1 385222391 12349843 complement(959853..960308) 1 NC_017361.1 hypothetical protein 960308 12349843 HPSA_04675 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771524.1 959853 R 907239 CDS YP_005771525.1 385222392 12349844 complement(960305..961246) 1 NC_017361.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; VirB11 type IV secretion ATPase 961246 12349844 HPSA_04680 Helicobacter pylori SouthAfrica7 VirB11 type IV secretion ATPase YP_005771525.1 960305 R 907239 CDS YP_005771526.1 385222393 12349845 complement(961246..961545) 1 NC_017361.1 hypothetical protein 961545 12349845 HPSA_04685 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771526.1 961246 R 907239 CDS YP_005771527.1 385222394 12349846 complement(961542..961805) 1 NC_017361.1 hypothetical protein 961805 12349846 HPSA_04690 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771527.1 961542 R 907239 CDS YP_005771528.1 385222395 12349847 complement(961795..962091) 1 NC_017361.1 hypothetical protein 962091 12349847 HPSA_04695 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771528.1 961795 R 907239 CDS YP_005771529.1 385222396 12349848 complement(962161..963396) 1 NC_017361.1 COG2948 Type IV secretory pathway, VirB10 components; competence protein 963396 12349848 HPSA_04700 Helicobacter pylori SouthAfrica7 competence protein YP_005771529.1 962161 R 907239 CDS YP_005771530.1 385222397 12349849 complement(963393..964934) 1 NC_017361.1 COG3504 Type IV secretory pathway, VirB9 components; comB9-like competence protein 964934 12349849 HPSA_04705 Helicobacter pylori SouthAfrica7 comB9-like competence protein YP_005771530.1 963393 R 907239 CDS YP_005771531.1 385222398 12349850 complement(964934..965920) 1 NC_017361.1 COG3736 Type IV secretory pathway, component VirB8; hypothetical protein 965920 12349850 HPSA_04710 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771531.1 964934 R 907239 CDS YP_005771532.1 385222399 12349851 complement(965922..966050) 1 NC_017361.1 hypothetical protein 966050 12349851 HPSA_04715 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771532.1 965922 R 907239 CDS YP_005771533.1 385222400 12349852 complement(966050..967993) 1 NC_017361.1 COG0550 Topoisomerase IA; topoisomerase I 967993 12349852 HPSA_04720 Helicobacter pylori SouthAfrica7 topoisomerase I YP_005771533.1 966050 R 907239 CDS YP_005771534.1 385222401 12349853 complement(967977..970475) 1 NC_017361.1 COG3451 Type IV secretory pathway, VirB4 components; DNA transfer protein 970475 12349853 HPSA_04725 Helicobacter pylori SouthAfrica7 DNA transfer protein YP_005771534.1 967977 R 907239 CDS YP_005771535.1 385222402 12349854 complement(970488..970748) 1 NC_017361.1 hypothetical protein 970748 12349854 HPSA_04730 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771535.1 970488 R 907239 CDS YP_005771536.1 385222403 12349855 complement(970749..971051) 1 NC_017361.1 hypothetical protein 971051 12349855 HPSA_04735 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771536.1 970749 R 907239 CDS YP_005771537.1 385222404 12349856 complement(971041..972975) 1 NC_017361.1 hypothetical protein 972975 12349856 HPSA_04740 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771537.1 971041 R 907239 CDS YP_005771538.1 385222405 12349857 973800..973988 1 NC_017361.1 cagY like protein 973988 12349857 HPSA_04755 Helicobacter pylori SouthAfrica7 cagY like protein YP_005771538.1 973800 D 907239 CDS YP_005771539.1 385222406 12349858 complement(974421..975434) 1 NC_017361.1 hypothetical protein 975434 12349858 HPSA_04760 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771539.1 974421 R 907239 CDS YP_005771540.1 385222407 12349859 complement(975444..975896) 1 NC_017361.1 COG1576 Uncharacterized conserved protein; rRNA large subunit methyltransferase 975896 12349859 HPSA_04765 Helicobacter pylori SouthAfrica7 rRNA large subunit methyltransferase YP_005771540.1 975444 R 907239 CDS YP_005771541.1 385222408 12349860 complement(975911..976780) 1 NC_017361.1 COG0777 Acetyl-CoA carboxylase beta subunit; acetyl-CoA carboxylase subunit beta 976780 12349860 HPSA_04770 Helicobacter pylori SouthAfrica7 acetyl-CoA carboxylase subunit beta YP_005771541.1 975911 R 907239 CDS YP_005771542.1 385222409 12349861 976862..977476 1 NC_017361.1 putative recombination protein RecO 977476 12349861 HPSA_04775 Helicobacter pylori SouthAfrica7 putative recombination protein RecO YP_005771542.1 976862 D 907239 CDS YP_005771543.1 385222410 12349862 977487..978143 1 NC_017361.1 COG1546 Uncharacterized protein (competence- and mitomycin-induced); hypothetical protein 978143 12349862 HPSA_04780 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771543.1 977487 D 907239 CDS YP_005771544.1 385222411 12349863 complement(978144..978710) 1 NC_017361.1 hypothetical protein 978710 12349863 HPSA_04785 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771544.1 978144 R 907239 CDS YP_005771545.1 385222412 12349864 complement(978775..979407) 1 NC_017361.1 COG0778 Nitroreductase; oxygen-insensitive NADPH nitroreductase 979407 12349864 HPSA_04790 Helicobacter pylori SouthAfrica7 oxygen-insensitive NADPH nitroreductase YP_005771545.1 978775 R 907239 CDS YP_005771546.1 385222413 12349865 complement(979404..980258) 1 NC_017361.1 COG0682 Prolipoprotein diacylglyceryltransferase; prolipoprotein diacylglyceryl transferase 980258 12349865 HPSA_04795 Helicobacter pylori SouthAfrica7 prolipoprotein diacylglyceryl transferase YP_005771546.1 979404 R 907239 CDS YP_005771547.1 385222414 12349866 complement(980267..980995) 1 NC_017361.1 COG0564 Pseudouridylate synthases, 23S RNA-specific; hypothetical protein 980995 12349866 HPSA_04800 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771547.1 980267 R 907239 CDS YP_005771548.1 385222415 12349867 complement(981013..982194) 1 NC_017361.1 COG1519 3-deoxy-D-manno-octulosonic-acid transferase; 3-deoxy-D-manno-octulosonic-acid transferase 982194 12349867 HPSA_04805 Helicobacter pylori SouthAfrica7 3-deoxy-D-manno-octulosonic-acid transferase YP_005771548.1 981013 R 907239 CDS YP_005771549.1 385222416 12349868 complement(982195..982953) 1 NC_017361.1 COG1579 Zn-ribbon protein, possibly nucleic acid-binding; hypothetical protein 982953 12349868 HPSA_04810 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771549.1 982195 R 907239 CDS YP_005771550.1 385222417 12349869 complement(982963..983694) 1 NC_017361.1 COG0327 Uncharacterized conserved protein; hypothetical protein 983694 12349869 HPSA_04815 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771550.1 982963 R 907239 CDS YP_005771551.1 385222418 12349870 complement(983696..984592) 1 NC_017361.1 COG0752 Glycyl-tRNA synthetase, alpha subunit; glycyl-tRNA synthetase subunit alpha 984592 glyQ 12349870 glyQ Helicobacter pylori SouthAfrica7 glycyl-tRNA synthetase subunit alpha YP_005771551.1 983696 R 907239 CDS YP_005771552.1 385222419 12349871 complement(984603..985541) 1 NC_017361.1 COG0240 Glycerol-3-phosphate dehydrogenase; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 985541 gpsA 12349871 gpsA Helicobacter pylori SouthAfrica7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_005771552.1 984603 R 907239 CDS YP_005771553.1 385222420 12349872 complement(985732..986250) 1 NC_017361.1 hypothetical protein 986250 12349872 HPSA_04830 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771553.1 985732 R 907239 CDS YP_005771554.1 385222421 12349873 complement(986308..987594) 1 NC_017361.1 COG0699 Predicted GTPases (dynamin-related); hypothetical protein 987594 12349873 HPSA_04835 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771554.1 986308 R 907239 CDS YP_005771555.1 385222422 12349874 complement(987591..989939) 1 NC_017361.1 COG0699 Predicted GTPases (dynamin-related); putative tRNA modification GTPase TrmE 989939 12349874 HPSA_04840 Helicobacter pylori SouthAfrica7 putative tRNA modification GTPase TrmE YP_005771555.1 987591 R 907239 CDS YP_005771556.1 385222423 12349875 complement(991826..992113) 1 NC_017361.1 COG3309 Uncharacterized virulence-associated protein D; virulence associated protein D (vapD) 992113 12349875 HPSA_04860 Helicobacter pylori SouthAfrica7 virulence associated protein D (vapD) YP_005771556.1 991826 R 907239 CDS YP_005771557.1 385222424 12349876 complement(992184..992465) 1 NC_017361.1 hypothetical protein 992465 12349876 HPSA_04865 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771557.1 992184 R 907239 CDS YP_005771558.1 385222425 12349877 complement(992481..995540) 1 NC_017361.1 COG3696 Putative silver efflux pump; cobalt-zinc-cadmium resistance protein 995540 12349877 HPSA_04870 Helicobacter pylori SouthAfrica7 cobalt-zinc-cadmium resistance protein YP_005771558.1 992481 R 907239 CDS YP_005771559.1 385222426 12349878 complement(995540..996604) 1 NC_017361.1 COG0845 Membrane-fusion protein; putative cobalt-zinc-cadmium resistance protein, CzcB family; putative signal peptide 996604 12349878 HPSA_04875 Helicobacter pylori SouthAfrica7 putative cobalt-zinc-cadmium resistance protein, CzcB family; putative signal peptide YP_005771559.1 995540 R 907239 CDS YP_005771560.1 385222427 12349879 complement(996601..997899) 1 NC_017361.1 hypothetical protein 997899 12349879 HPSA_04880 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771560.1 996601 R 907239 CDS YP_005771561.1 385222428 12349880 complement(997889..1000018) 1 NC_017361.1 COG0751 Glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 1000018 glyS 12349880 glyS Helicobacter pylori SouthAfrica7 glycyl-tRNA synthetase subunit beta YP_005771561.1 997889 R 907239 CDS YP_005771562.1 385222429 12349881 1001205..1002683 1 NC_017361.1 COG0696 Phosphoglyceromutase; phosphoglyceromutase 1002683 12349881 HPSA_04890 Helicobacter pylori SouthAfrica7 phosphoglyceromutase YP_005771562.1 1001205 D 907239 CDS YP_005771563.1 385222430 12349882 1002698..1002976 1 NC_017361.1 COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; aspartyl/glutamyl-tRNA amidotransferase subunit C 1002976 gatC 12349882 gatC Helicobacter pylori SouthAfrica7 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_005771563.1 1002698 D 907239 CDS YP_005771564.1 385222431 12349883 complement(1003087..1004397) 1 NC_017361.1 COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1004397 12349883 HPSA_04900 Helicobacter pylori SouthAfrica7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_005771564.1 1003087 R 907239 CDS YP_005771565.1 385222432 12349884 1004519..1005982 1 NC_017361.1 COG0760 Parvulin-like peptidyl-prolyl isomerase; hypothetical protein 1005982 12349884 HPSA_04905 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771565.1 1004519 D 907239 CDS YP_005771566.1 385222433 12349885 1005998..1007479 1 NC_017361.1 COG0849 Actin-like ATPase involved in cell division; cell division protein FtsA 1007479 12349885 HPSA_04910 Helicobacter pylori SouthAfrica7 cell division protein FtsA YP_005771566.1 1005998 D 907239 CDS YP_005771567.1 385222434 12349886 1007608..1008765 1 NC_017361.1 COG0206 Cell division GTPase; cell division protein FtsZ 1008765 12349886 HPSA_04915 Helicobacter pylori SouthAfrica7 cell division protein FtsZ YP_005771567.1 1007608 D 907239 CDS YP_005771568.1 385222435 12349887 complement(1009055..1009270) 1 NC_017361.1 hypothetical protein 1009270 12349887 HPSA_04920 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771568.1 1009055 R 907239 CDS YP_005771569.1 385222436 12349888 complement(1009457..1009567) 1 NC_017361.1 hypothetical protein 1009567 12349888 HPSA_04925 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771569.1 1009457 R 907239 CDS YP_005771570.1 385222437 12349889 complement(1009962..1010135) 1 NC_017361.1 hypothetical protein 1010135 12349889 HPSA_04930 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771570.1 1009962 R 907239 CDS YP_005771571.1 385222438 12349890 complement(1010185..1011915) 1 NC_017361.1 COG1479 Uncharacterized conserved protein; hypothetical protein 1011915 12349890 HPSA_04935 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771571.1 1010185 R 907239 CDS YP_005771572.1 385222439 12349891 complement(1012193..1013017) 1 NC_017361.1 COG0668 Small-conductance mechanosensitive channel; mechanosensitive channel MscS 1013017 12349891 HPSA_04940 Helicobacter pylori SouthAfrica7 mechanosensitive channel MscS YP_005771572.1 1012193 R 907239 CDS YP_005771573.1 385222440 12349892 1013086..1013187 1 NC_017361.1 hypothetical protein 1013187 12349892 HPSA_04945 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771573.1 1013086 D 907239 CDS YP_005771574.1 385222441 12349893 complement(1013115..1013330) 1 NC_017361.1 hypothetical protein 1013330 12349893 HPSA_04950 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771574.1 1013115 R 907239 CDS YP_005771575.1 385222442 12349894 1013463..1013648 1 NC_017361.1 hypothetical protein 1013648 12349894 HPSA_04955 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771575.1 1013463 D 907239 CDS YP_005771576.1 385222443 12349897 1017799..1017963 1 NC_017361.1 hypothetical protein 1017963 12349897 HPSA_04960 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771576.1 1017799 D 907239 CDS YP_005771577.1 385222444 12349898 1018016..1018354 1 NC_017361.1 COG0439 Biotin carboxylase; hypothetical protein 1018354 12349898 HPSA_04965 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771577.1 1018016 D 907239 CDS YP_005771578.1 385222445 12349899 1018523..1020349 1 NC_017361.1 COG1479 Uncharacterized conserved protein; hypothetical protein 1020349 12349899 HPSA_04970 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771578.1 1018523 D 907239 CDS YP_005771579.1 385222446 12349900 1020504..1021385 1 NC_017361.1 hypothetical protein 1021385 12349900 HPSA_04975 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771579.1 1020504 D 907239 CDS YP_005771580.1 385222447 12349901 1021739..1021906 1 NC_017361.1 hypothetical protein 1021906 12349901 HPSA_04980 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771580.1 1021739 D 907239 CDS YP_005771581.1 385222448 12349902 complement(1022071..1023918) 1 NC_017361.1 COG1166 Arginine decarboxylase (spermidine biosynthesis); arginine decarboxylase 1023918 12349902 HPSA_04985 Helicobacter pylori SouthAfrica7 arginine decarboxylase YP_005771581.1 1022071 R 907239 CDS YP_005771582.1 385222449 12349903 complement(1023933..1025102) 1 NC_017361.1 COG0438 Glycosyltransferase; type 1 capsular polysaccharide biosynthesis protein J 1025102 12349903 HPSA_04990 Helicobacter pylori SouthAfrica7 type 1 capsular polysaccharide biosynthesis protein J YP_005771582.1 1023933 R 907239 CDS YP_005771583.1 385222450 12349904 complement(1025107..1025535) 1 NC_017361.1 COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 1025535 12349904 HPSA_04995 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771583.1 1025107 R 907239 CDS YP_005771584.1 385222451 12349905 complement(1025557..1026345) 1 NC_017361.1 COG0500 SAM-dependent methyltransferases; methyltransferase 1026345 12349905 HPSA_05000 Helicobacter pylori SouthAfrica7 methyltransferase YP_005771584.1 1025557 R 907239 CDS YP_005771585.1 385222452 12349906 complement(1026349..1027356) 1 NC_017361.1 hypothetical protein 1027356 12349906 HPSA_05005 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771585.1 1026349 R 907239 CDS YP_005771586.1 385222453 12349907 complement(1027357..1029285) 1 NC_017361.1 COG0143 Methionyl-tRNA synthetase; methionyl-tRNA synthetase 1029285 12349907 HPSA_05010 Helicobacter pylori SouthAfrica7 methionyl-tRNA synthetase YP_005771586.1 1027357 R 907239 CDS YP_005771587.1 385222454 12349908 1029470..1030639 1 NC_017361.1 COG2230 Cyclopropane fatty acid synthase and related methyltransferases; cyclopropane fatty acid synthase 1030639 12349908 HPSA_05015 Helicobacter pylori SouthAfrica7 cyclopropane fatty acid synthase YP_005771587.1 1029470 D 907239 CDS YP_005771588.1 385222455 12349909 complement(1030642..1032474) 1 NC_017361.1 COG0668 Small-conductance mechanosensitive channel; hypothetical protein 1032474 12349909 HPSA_05020 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771588.1 1030642 R 907239 CDS YP_005771589.1 385222456 12349910 1032474..1032575 1 NC_017361.1 hypothetical protein 1032575 12349910 HPSA_05025 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771589.1 1032474 D 907239 CDS YP_005771590.1 385222457 12349911 complement(1033416..1033514) 1 NC_017361.1 hypothetical protein 1033514 12349911 HPSA_05030 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771590.1 1033416 R 907239 CDS YP_005771591.1 385222458 12349916 complement(1033978..1034079) 1 NC_017361.1 hypothetical protein 1034079 12349916 HPSA_05035 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771591.1 1033978 R 907239 CDS YP_005771592.1 385222459 12349917 complement(1034164..1035003) 1 NC_017361.1 putative neuraminyllactose-binding hemagglutinin-like protein 1035003 12349917 HPSA_05040 Helicobacter pylori SouthAfrica7 putative neuraminyllactose-binding hemagglutinin-like protein YP_005771592.1 1034164 R 907239 CDS YP_005771593.1 385222460 12349918 complement(1034990..1036516) 1 NC_017361.1 COG0518 GMP synthase - Glutamine amidotransferase domain; GMP synthase 1036516 guaA 12349918 guaA Helicobacter pylori SouthAfrica7 GMP synthase YP_005771593.1 1034990 R 907239 CDS YP_005771594.1 385222461 12349919 complement(1036527..1037012) 1 NC_017361.1 hypothetical protein 1037012 12349919 HPSA_05050 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771594.1 1036527 R 907239 CDS YP_005771595.1 385222462 12349920 complement(1037009..1037155) 1 NC_017361.1 hypothetical protein 1037155 12349920 HPSA_05055 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771595.1 1037009 R 907239 CDS YP_005771596.1 385222463 12349921 complement(1037180..1039570) 1 NC_017361.1 COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; biotin sulfoxide reductase 1039570 12349921 HPSA_05060 Helicobacter pylori SouthAfrica7 biotin sulfoxide reductase YP_005771596.1 1037180 R 907239 CDS YP_005771597.1 385222464 12349922 complement(1039674..1040264) 1 NC_017361.1 hypothetical protein 1040264 12349922 HPSA_05065 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771597.1 1039674 R 907239 CDS YP_005771598.1 385222465 12349923 complement(1040291..1041613) 1 NC_017361.1 COG0520 Selenocysteine lyase; nifS-like protein 1041613 12349923 HPSA_05070 Helicobacter pylori SouthAfrica7 nifS-like protein YP_005771598.1 1040291 R 907239 CDS YP_005771599.1 385222466 12349924 complement(1041632..1041946) 1 NC_017361.1 COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; HIT-family protein 1041946 12349924 HPSA_05075 Helicobacter pylori SouthAfrica7 HIT-family protein YP_005771599.1 1041632 R 907239 CDS YP_005771600.1 385222467 12349925 1042027..1043013 1 NC_017361.1 COG0016 Phenylalanyl-tRNA synthetase alpha subunit; phenylalanyl-tRNA synthetase subunit alpha 1043013 pheS 12349925 pheS Helicobacter pylori SouthAfrica7 phenylalanyl-tRNA synthetase subunit alpha YP_005771600.1 1042027 D 907239 CDS YP_005771601.1 385222468 12349926 1043013..1045304 1 NC_017361.1 COG0073 EMAP domain; phenylalanyl-tRNA synthetase subunit beta 1045304 pheT 12349926 pheT Helicobacter pylori SouthAfrica7 phenylalanyl-tRNA synthetase subunit beta YP_005771601.1 1043013 D 907239 CDS YP_005771602.1 385222469 12349927 1045329..1046618 1 NC_017361.1 COG0128 5-enolpyruvylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1046618 12349927 HPSA_05090 Helicobacter pylori SouthAfrica7 3-phosphoshikimate 1-carboxyvinyltransferase YP_005771602.1 1045329 D 907239 CDS YP_005771603.1 385222470 12349928 1046608..1047432 1 NC_017361.1 COG0761 Penicillin tolerance protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1047432 ispH 12349928 ispH Helicobacter pylori SouthAfrica7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_005771603.1 1046608 D 907239 CDS YP_005771604.1 385222471 12349929 1047554..1049215 1 NC_017361.1 COG0539 Ribosomal protein S1; 30S ribosomal protein S1 1049215 rpsA 12349929 rpsA Helicobacter pylori SouthAfrica7 30S ribosomal protein S1 YP_005771604.1 1047554 D 907239 CDS YP_005771605.1 385222472 12349930 1049244..1049762 1 NC_017361.1 COG0480 Translation elongation factors (GTPases); hypothetical protein 1049762 12349930 HPSA_05105 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771605.1 1049244 D 907239 CDS YP_005771606.1 385222473 12349931 1049778..1051352 1 NC_017361.1 COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; D-3-phosphoglycerate dehydrogenase 1051352 12349931 HPSA_05110 Helicobacter pylori SouthAfrica7 D-3-phosphoglycerate dehydrogenase YP_005771606.1 1049778 D 907239 CDS YP_005771607.1 385222474 12349932 1051322..1051873 1 NC_017361.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1051873 12349932 HPSA_05115 Helicobacter pylori SouthAfrica7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005771607.1 1051322 D 907239 CDS YP_005771608.1 385222475 12349933 1051876..1053204 1 NC_017361.1 COG0043 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases; hypothetical protein 1053204 12349933 HPSA_05120 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771608.1 1051876 D 907239 CDS YP_005771609.1 385222476 12349934 1053214..1053882 1 NC_017361.1 COG0325 Predicted enzyme with a TIM-barrel fold; hypothetical protein 1053882 12349934 HPSA_05125 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771609.1 1053214 D 907239 CDS YP_005771610.1 385222477 12349935 1053884..1054657 1 NC_017361.1 COG2908 Uncharacterized protein conserved in bacteria; UDP-2,3-diacylglucosamine hydrolase 1054657 12349935 HPSA_05130 Helicobacter pylori SouthAfrica7 UDP-2,3-diacylglucosamine hydrolase YP_005771610.1 1053884 D 907239 CDS YP_005771611.1 385222478 12349936 1054661..1055599 1 NC_017361.1 COG0835 Chemotaxis signal transduction protein; chemotaxis protein CheV 1055599 12349936 HPSA_05135 Helicobacter pylori SouthAfrica7 chemotaxis protein CheV YP_005771611.1 1054661 D 907239 CDS YP_005771612.1 385222479 12349937 1055653..1058085 1 NC_017361.1 COG0643 Chemotaxis protein histidine kinase and related kinases; auto phosphorylating histidine kinase 1058085 12349937 HPSA_05140 Helicobacter pylori SouthAfrica7 auto phosphorylating histidine kinase YP_005771612.1 1055653 D 907239 CDS YP_005771613.1 385222480 12349938 1058082..1058579 1 NC_017361.1 COG0835 Chemotaxis signal transduction protein; CheA-MCP coupling protein 1058579 12349938 HPSA_05145 Helicobacter pylori SouthAfrica7 CheA-MCP coupling protein YP_005771613.1 1058082 D 907239 CDS YP_005771614.1 385222481 12349939 complement(1058832..1059332) 1 NC_017361.1 COG2077 Peroxiredoxin; thiol peroxidase 1059332 12349939 HPSA_05150 Helicobacter pylori SouthAfrica7 thiol peroxidase YP_005771614.1 1058832 R 907239 CDS YP_005771615.1 385222482 12349940 1059556..1060197 1 NC_017361.1 COG0605 Superoxide dismutase; superoxide dismutase 1060197 12349940 HPSA_05155 Helicobacter pylori SouthAfrica7 superoxide dismutase YP_005771615.1 1059556 D 907239 CDS YP_005771616.1 385222483 12349941 1060249..1060968 1 NC_017361.1 COG0500 SAM-dependent methyltransferases; hypothetical protein 1060968 12349941 HPSA_05160 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771616.1 1060249 D 907239 CDS YP_005771617.1 385222484 12349942 complement(1061002..1062861) 1 NC_017361.1 COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase; primosome assembly protein PriA 1062861 12349942 HPSA_05165 Helicobacter pylori SouthAfrica7 primosome assembly protein PriA YP_005771617.1 1061002 R 907239 CDS YP_005771618.1 385222485 12349943 complement(1062846..1063082) 1 NC_017361.1 hypothetical protein 1063082 12349943 HPSA_05170 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771618.1 1062846 R 907239 CDS YP_005771619.1 385222486 12349944 complement(1063095..1063322) 1 NC_017361.1 COG0055 F0F1-type ATP synthase, beta subunit; hypothetical protein 1063322 12349944 HPSA_05175 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771619.1 1063095 R 907239 CDS YP_005771620.1 385222487 12349945 1063802..1064554 1 NC_017361.1 hypothetical protein 1064554 12349945 HPSA_05180 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771620.1 1063802 D 907239 CDS YP_005771621.1 385222488 12349946 complement(1064679..1065209) 1 NC_017361.1 hypothetical protein 1065209 12349946 HPSA_05185 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771621.1 1064679 R 907239 CDS YP_005771622.1 385222489 12349947 1065375..1066598 1 NC_017361.1 COG0501 Zn-dependent protease with chaperone function; zinc-metalloprotease 1066598 12349947 HPSA_05190 Helicobacter pylori SouthAfrica7 zinc-metalloprotease YP_005771622.1 1065375 D 907239 CDS YP_005771623.1 385222490 12349948 1066595..1067431 1 NC_017361.1 COG2890 Methylase of polypeptide chain release factors; protoporphyrinogen oxidase 1067431 12349948 HPSA_05195 Helicobacter pylori SouthAfrica7 protoporphyrinogen oxidase YP_005771623.1 1066595 D 907239 CDS YP_005771624.1 385222491 12349949 1067492..1068838 1 NC_017361.1 COG0334 Glutamate dehydrogenase/leucine dehydrogenase; glutamate dehydrogenase 1068838 12349949 HPSA_05200 Helicobacter pylori SouthAfrica7 glutamate dehydrogenase YP_005771624.1 1067492 D 907239 CDS YP_005771625.1 385222492 12349950 complement(1068861..1070027) 1 NC_017361.1 Alpha-(1,3)-fucosyltransferase 1070027 12349950 HPSA_05205 Helicobacter pylori SouthAfrica7 Alpha-(1,3)-fucosyltransferase YP_005771625.1 1068861 R 907239 CDS YP_005771626.1 385222493 12349951 complement(1070002..1070118) 1 NC_017361.1 hypothetical protein 1070118 12349951 HPSA_05210 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771626.1 1070002 R 907239 CDS YP_005771627.1 385222494 12349952 complement(1070128..1072938) 1 NC_017361.1 COG1333 ResB protein required for cytochrome c biosynthesis; cytochrome c biogenesis protein 1072938 12349952 HPSA_05215 Helicobacter pylori SouthAfrica7 cytochrome c biogenesis protein YP_005771627.1 1070128 R 907239 CDS YP_005771628.1 385222495 12349953 complement(1072948..1073613) 1 NC_017361.1 COG2143 Thioredoxin-related protein; thiol:disulfide interchange protein DsbC 1073613 12349953 HPSA_05220 Helicobacter pylori SouthAfrica7 thiol:disulfide interchange protein DsbC YP_005771628.1 1072948 R 907239 CDS YP_005771629.1 385222496 12349954 complement(1073687..1074694) 1 NC_017361.1 COG0276 Protoheme ferro-lyase (ferrochelatase); ferrochelatase 1074694 hemH 12349954 hemH Helicobacter pylori SouthAfrica7 ferrochelatase YP_005771629.1 1073687 R 907239 CDS YP_005771630.1 385222497 12349955 1074750..1075181 1 NC_017361.1 hypothetical protein 1075181 12349955 HPSA_05230 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771630.1 1074750 D 907239 CDS YP_005771631.1 385222498 12349956 1075182..1075862 1 NC_017361.1 COG1385 Uncharacterized protein conserved in bacteria; 16S ribosomal RNA methyltransferase RsmE 1075862 12349956 HPSA_05235 Helicobacter pylori SouthAfrica7 16S ribosomal RNA methyltransferase RsmE YP_005771631.1 1075182 D 907239 CDS YP_005771632.1 385222499 12349957 complement(1075958..1078036) 1 NC_017361.1 hypothetical protein 1078036 12349957 HPSA_05240 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771632.1 1075958 R 907239 CDS YP_005771633.1 385222500 12349958 complement(1078186..1078752) 1 NC_017361.1 COG0717 Deoxycytidine deaminase; deoxycytidine triphosphate deaminase 1078752 dcd 12349958 dcd Helicobacter pylori SouthAfrica7 deoxycytidine triphosphate deaminase YP_005771633.1 1078186 R 907239 CDS YP_005771634.1 385222501 12349959 1078877..1079362 1 NC_017361.1 COG0511 Biotin carboxyl carrier protein; biotin carboxyl carrier protein 1079362 12349959 HPSA_05250 Helicobacter pylori SouthAfrica7 biotin carboxyl carrier protein YP_005771634.1 1078877 D 907239 CDS YP_005771635.1 385222502 12349960 1079368..1080735 1 NC_017361.1 COG0439 Biotin carboxylase; biotin carboxylase 1080735 12349960 HPSA_05255 Helicobacter pylori SouthAfrica7 biotin carboxylase YP_005771635.1 1079368 D 907239 CDS YP_005771636.1 385222503 12349961 1081795..1082343 1 NC_017361.1 putative type II restriction endonuclease 1082343 12349961 HPSA_05270 Helicobacter pylori SouthAfrica7 putative type II restriction endonuclease YP_005771636.1 1081795 D 907239 CDS YP_005771637.1 385222504 12349962 1082437..1083042 1 NC_017361.1 hypothetical protein 1083042 12349962 HPSA_05275 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771637.1 1082437 D 907239 CDS YP_005771638.1 385222505 12349963 1083039..1084169 1 NC_017361.1 COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; sugar nucleotide biosynthesis 1084169 12349963 HPSA_05280 Helicobacter pylori SouthAfrica7 sugar nucleotide biosynthesis YP_005771638.1 1083039 D 907239 CDS YP_005771639.1 385222506 12349965 1084471..1085496 1 NC_017361.1 COG0208 Ribonucleotide reductase, beta subunit; ribonucleotide-diphosphate reductase subunit beta 1085496 nrdF 12349965 nrdF Helicobacter pylori SouthAfrica7 ribonucleotide-diphosphate reductase subunit beta YP_005771639.1 1084471 D 907239 CDS YP_005771640.1 385222507 12349966 1085506..1086135 1 NC_017361.1 COG2518 Protein-L-isoaspartate carboxylmethyltransferase; protein-L-isoaspartate O-methyltransferase 1086135 pcm 12349966 pcm Helicobacter pylori SouthAfrica7 protein-L-isoaspartate O-methyltransferase YP_005771640.1 1085506 D 907239 CDS YP_005771641.1 385222508 12349967 1086155..1087192 1 NC_017361.1 COG0795 Predicted permeases; hypothetical protein 1087192 12349967 HPSA_05295 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771641.1 1086155 D 907239 CDS YP_005771642.1 385222509 12349968 1087193..1087921 1 NC_017361.1 COG0101 Pseudouridylate synthase; tRNA pseudouridine synthase A 1087921 truA 12349968 truA Helicobacter pylori SouthAfrica7 tRNA pseudouridine synthase A YP_005771642.1 1087193 D 907239 CDS YP_005771643.1 385222510 12349969 complement(1087915..1088949) 1 NC_017361.1 COG1087 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 1088949 12349969 HPSA_05305 Helicobacter pylori SouthAfrica7 UDP-glucose 4-epimerase YP_005771643.1 1087915 R 907239 CDS YP_005771644.1 385222511 12349972 complement(1089345..1089629) 1 NC_017361.1 hypothetical protein 1089629 12349972 HPSA_05315 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771644.1 1089345 R 907239 CDS YP_005771645.1 385222512 12349973 1089996..1091531 1 NC_017361.1 putative outer membrane protein 1091531 12349973 HPSA_05320 Helicobacter pylori SouthAfrica7 putative outer membrane protein YP_005771645.1 1089996 D 907239 CDS YP_005771646.1 385222513 12349974 1091553..1092305 1 NC_017361.1 COG4221 Short-chain alcohol dehydrogenase of unknown specificity; short chain alcohol dehydrogenase 1092305 12349974 HPSA_05325 Helicobacter pylori SouthAfrica7 short chain alcohol dehydrogenase YP_005771646.1 1091553 D 907239 CDS YP_005771647.1 385222514 12349975 complement(1092368..1092481) 1 NC_017361.1 hypothetical protein 1092481 12349975 HPSA_05330 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771647.1 1092368 R 907239 CDS YP_005771648.1 385222515 12349976 complement(1092517..1093389) 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1093389 12349976 HPSA_05335 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771648.1 1092517 R 907239 CDS YP_005771649.1 385222516 12349977 complement(1093481..1094113) 1 NC_017361.1 COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase 1094113 12349977 HPSA_05340 Helicobacter pylori SouthAfrica7 2-keto-3-deoxy-6-phosphogluconate aldolase YP_005771649.1 1093481 R 907239 CDS YP_005771650.1 385222517 12349978 complement(1094132..1095958) 1 NC_017361.1 COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase; phosphogluconate dehydratase 1095958 12349978 HPSA_05345 Helicobacter pylori SouthAfrica7 phosphogluconate dehydratase YP_005771650.1 1094132 R 907239 CDS YP_005771651.1 385222518 12349979 1096024..1097301 1 NC_017361.1 COG0364 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1097301 12349979 HPSA_05350 Helicobacter pylori SouthAfrica7 glucose-6-phosphate 1-dehydrogenase YP_005771651.1 1096024 D 907239 CDS YP_005771652.1 385222519 12349980 1097312..1097995 1 NC_017361.1 COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase; 6-phosphogluconolactonase 1097995 12349980 HPSA_05355 Helicobacter pylori SouthAfrica7 6-phosphogluconolactonase YP_005771652.1 1097312 D 907239 CDS YP_005771653.1 385222520 12349981 1097982..1098992 1 NC_017361.1 COG0837 Glucokinase; glucokinase 1098992 glk 12349981 glk Helicobacter pylori SouthAfrica7 glucokinase YP_005771653.1 1097982 D 907239 CDS YP_005771654.1 385222521 12349982 1099157..1100203 1 NC_017361.1 COG1064 Zn-dependent alcohol dehydrogenases; NADP-dependent alcohol dehydrogenase 1100203 12349982 HPSA_05365 Helicobacter pylori SouthAfrica7 NADP-dependent alcohol dehydrogenase YP_005771654.1 1099157 D 907239 CDS YP_005771655.1 385222522 12349983 complement(1100216..1101382) 1 NC_017361.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; putative lipopolysaccharide biosynthesis protein 1101382 12349983 HPSA_05370 Helicobacter pylori SouthAfrica7 putative lipopolysaccharide biosynthesis protein YP_005771655.1 1100216 R 907239 CDS YP_005771656.1 385222523 12349984 complement(1101516..1102712) 1 NC_017361.1 COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases; lipopolysaccharide biosynthesis protein 1102712 12349984 HPSA_05375 Helicobacter pylori SouthAfrica7 lipopolysaccharide biosynthesis protein YP_005771656.1 1101516 R 907239 CDS YP_005771657.1 385222524 12349985 1102883..1104190 1 NC_017361.1 hypothetical protein 1104190 12349985 HPSA_05380 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771657.1 1102883 D 907239 CDS YP_005771658.1 385222525 12349986 complement(1104197..1104859) 1 NC_017361.1 putative outer membrane protein HorH; putative signal peptide 1104859 12349986 HPSA_05385 Helicobacter pylori SouthAfrica7 putative outer membrane protein HorH; putative signal peptide YP_005771658.1 1104197 R 907239 CDS YP_005771659.1 385222526 12349987 1105186..1105746 1 NC_017361.1 COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate flavodoxin oxidoreductase subunit gamma 1105746 12349987 HPSA_05390 Helicobacter pylori SouthAfrica7 pyruvate flavodoxin oxidoreductase subunit gamma YP_005771659.1 1105186 D 907239 CDS YP_005771660.1 385222527 12349988 1105762..1106154 1 NC_017361.1 COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit; pyruvate flavodoxin oxidoreductase subunit delta 1106154 porD 12349988 porD Helicobacter pylori SouthAfrica7 pyruvate flavodoxin oxidoreductase subunit delta YP_005771660.1 1105762 D 907239 CDS YP_005771661.1 385222528 12349989 1106164..1107387 1 NC_017361.1 COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin oxidoreductase subunit alpha 1107387 porA 12349989 porA Helicobacter pylori SouthAfrica7 pyruvate flavodoxin oxidoreductase subunit alpha YP_005771661.1 1106164 D 907239 CDS YP_005771662.1 385222529 12349990 1107400..1108344 1 NC_017361.1 COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; pyruvate ferredoxin oxidoreductase subunit beta 1108344 12349990 HPSA_05405 Helicobacter pylori SouthAfrica7 pyruvate ferredoxin oxidoreductase subunit beta YP_005771662.1 1107400 D 907239 CDS YP_005771663.1 385222530 12349991 1108437..1109759 1 NC_017361.1 COG0015 Adenylosuccinate lyase; adenylosuccinate lyase 1109759 12349991 HPSA_05410 Helicobacter pylori SouthAfrica7 adenylosuccinate lyase YP_005771663.1 1108437 D 907239 CDS YP_005771664.1 385222531 12349992 1109860..1110693 1 NC_017361.1 outer membrane protein 3 1110693 12349992 HPSA_05415 Helicobacter pylori SouthAfrica7 outer membrane protein 3 YP_005771664.1 1109860 D 907239 CDS YP_005771665.1 385222532 12349993 complement(1110717..1112693) 1 NC_017361.1 COG0556 Helicase subunit of the DNA excision repair complex; excinuclease ABC subunit B 1112693 12349993 HPSA_05420 Helicobacter pylori SouthAfrica7 excinuclease ABC subunit B YP_005771665.1 1110717 R 907239 CDS YP_005771666.1 385222533 12349994 complement(1112733..1113413) 1 NC_017361.1 hypothetical protein 1113413 12349994 HPSA_05425 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771666.1 1112733 R 907239 CDS YP_005771667.1 385222534 12349995 complement(1113426..1116326) 1 NC_017361.1 hypothetical protein 1116326 12349995 HPSA_05430 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771667.1 1113426 R 907239 CDS YP_005771668.1 385222535 12349996 complement(1116707..1117477) 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1117477 12349996 HPSA_05435 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771668.1 1116707 R 907239 CDS YP_005771669.1 385222536 12349997 complement(1117751..1119454) 1 NC_017361.1 COG0405 Gamma-glutamyltransferase; gamma-glutamyltranspeptidase 1119454 12349997 HPSA_05440 Helicobacter pylori SouthAfrica7 gamma-glutamyltranspeptidase YP_005771669.1 1117751 R 907239 CDS YP_005771670.1 385222537 12349998 complement(1119789..1121609) 1 NC_017361.1 COG1256 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 1121609 flgK 12349998 flgK Helicobacter pylori SouthAfrica7 flagellar hook-associated protein FlgK YP_005771670.1 1119789 R 907239 CDS YP_005771671.1 385222538 12349999 complement(1121611..1122045) 1 NC_017361.1 hypothetical protein 1122045 12349999 HPSA_05450 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771671.1 1121611 R 907239 CDS YP_005771672.1 385222539 12350000 complement(1122124..1122849) 1 NC_017361.1 hypothetical protein 1122849 12350000 HPSA_05455 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771672.1 1122124 R 907239 CDS YP_005771673.1 385222540 12350001 complement(1122867..1123832) 1 NC_017361.1 COG0270 Site-specific DNA methylase; type II DNA modification enzyme 1123832 12350001 HPSA_05460 Helicobacter pylori SouthAfrica7 type II DNA modification enzyme YP_005771673.1 1122867 R 907239 CDS YP_005771674.1 385222541 12350002 complement(1123975..1124187) 1 NC_017361.1 FlgM protein 1124187 12350002 HPSA_05465 Helicobacter pylori SouthAfrica7 FlgM protein YP_005771674.1 1123975 R 907239 CDS YP_005771675.1 385222542 12350003 complement(1124256..1124462) 1 NC_017361.1 hypothetical protein 1124462 12350003 HPSA_05470 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771675.1 1124256 R 907239 CDS YP_005771676.1 385222543 12350004 complement(1124504..1125052) 1 NC_017361.1 COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2; FKBP-type peptidyl-prolyl cis-trans isomerase slyD 1125052 12350004 HPSA_05475 Helicobacter pylori SouthAfrica7 FKBP-type peptidyl-prolyl cis-trans isomerase slyD YP_005771676.1 1124504 R 907239 CDS YP_005771677.1 385222544 12350005 complement(1125039..1126088) 1 NC_017361.1 COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID; hypothetical protein 1126088 12350005 HPSA_05480 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771677.1 1125039 R 907239 CDS YP_005771678.1 385222545 12350006 complement(1126096..1126644) 1 NC_017361.1 COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins; peptidoglycan-associated lipoprotein 1126644 12350006 HPSA_05485 Helicobacter pylori SouthAfrica7 peptidoglycan-associated lipoprotein YP_005771678.1 1126096 R 907239 CDS YP_005771679.1 385222546 12350007 complement(1126710..1127963) 1 NC_017361.1 COG0823 Periplasmic component of the Tol biopolymer transport system; translocation protein TolB 1127963 tolB 12350007 tolB Helicobacter pylori SouthAfrica7 translocation protein TolB YP_005771679.1 1126710 R 907239 CDS YP_005771680.1 385222547 12350008 complement(1127960..1128748) 1 NC_017361.1 hypothetical protein 1128748 12350008 HPSA_05495 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771680.1 1127960 R 907239 CDS YP_005771681.1 385222548 12350009 complement(1128762..1129163) 1 NC_017361.1 COG0848 Biopolymer transport protein; biopolymer transport protein ExbD/TolR 1129163 12350009 HPSA_05500 Helicobacter pylori SouthAfrica7 biopolymer transport protein ExbD/TolR YP_005771681.1 1128762 R 907239 CDS YP_005771682.1 385222549 12350010 complement(1129203..1129781) 1 NC_017361.1 COG0811 Biopolymer transport proteins; biopolymer transport protein 1129781 12350010 HPSA_05505 Helicobacter pylori SouthAfrica7 biopolymer transport protein YP_005771682.1 1129203 R 907239 CDS YP_005771683.1 385222550 12350011 complement(1129792..1130163) 1 NC_017361.1 COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit); F0F1 ATP synthase subunit epsilon 1130163 atpC 12350011 atpC Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit epsilon YP_005771683.1 1129792 R 907239 CDS YP_005771684.1 385222551 12350012 complement(1130173..1131573) 1 NC_017361.1 COG0055 F0F1-type ATP synthase, beta subunit; F0F1 ATP synthase subunit beta 1131573 12350012 HPSA_05515 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit beta YP_005771684.1 1130173 R 907239 CDS YP_005771685.1 385222552 12350013 complement(1131601..1132506) 1 NC_017361.1 COG0224 F0F1-type ATP synthase, gamma subunit; F0F1 ATP synthase subunit gamma 1132506 12350013 HPSA_05520 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit gamma YP_005771685.1 1131601 R 907239 CDS YP_005771686.1 385222553 12350014 complement(1132521..1134032) 1 NC_017361.1 COG0056 F0F1-type ATP synthase, alpha subunit; F0F1 ATP synthase subunit alpha 1134032 12350014 HPSA_05525 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit alpha YP_005771686.1 1132521 R 907239 CDS YP_005771687.1 385222554 12350015 complement(1134055..1134597) 1 NC_017361.1 F0F1 ATP synthase subunit delta 1134597 12350015 HPSA_05530 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit delta YP_005771687.1 1134055 R 907239 CDS YP_005771688.1 385222555 12350016 complement(1134598..1135113) 1 NC_017361.1 COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B 1135113 12350016 HPSA_05535 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit B YP_005771688.1 1134598 R 907239 CDS YP_005771689.1 385222556 12350017 complement(1135117..1135551) 1 NC_017361.1 COG0711 F0F1-type ATP synthase, subunit b; F0F1 ATP synthase subunit B' 1135551 12350017 HPSA_05540 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit B' YP_005771689.1 1135117 R 907239 CDS YP_005771690.1 385222557 12350018 complement(1135666..1136538) 1 NC_017361.1 COG1475 Predicted transcriptional regulators; plasmid replication-partition related protein 1136538 12350018 HPSA_05545 Helicobacter pylori SouthAfrica7 plasmid replication-partition related protein YP_005771690.1 1135666 R 907239 CDS YP_005771691.1 385222558 12350019 complement(1136538..1137338) 1 NC_017361.1 COG1192 ATPases involved in chromosome partitioning; SpoOJ regulator (soj) 1137338 12350019 HPSA_05550 Helicobacter pylori SouthAfrica7 SpoOJ regulator (soj) YP_005771691.1 1136538 R 907239 CDS YP_005771692.1 385222559 12350020 complement(1137341..1137979) 1 NC_017361.1 COG0340 Biotin-(acetyl-CoA carboxylase) ligase; biotin--protein ligase 1137979 12350020 HPSA_05555 Helicobacter pylori SouthAfrica7 biotin--protein ligase YP_005771692.1 1137341 R 907239 CDS YP_005771693.1 385222560 12350021 complement(1137976..1138893) 1 NC_017361.1 COG0223 Methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 1138893 fmt 12350021 fmt Helicobacter pylori SouthAfrica7 methionyl-tRNA formyltransferase YP_005771693.1 1137976 R 907239 CDS YP_005771694.1 385222561 12350022 complement(1138905..1141496) 1 NC_017361.1 COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components; ATPase 1141496 12350022 HPSA_05565 Helicobacter pylori SouthAfrica7 ATPase YP_005771694.1 1138905 R 907239 CDS YP_005771695.1 385222562 12350023 complement(1141550..1142839) 1 NC_017361.1 COG4487 Uncharacterized protein conserved in bacteria; hypothetical protein 1142839 12350023 HPSA_05570 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771695.1 1141550 R 907239 CDS YP_005771696.1 385222563 12350024 1142956..1143504 1 NC_017361.1 hypothetical protein 1143504 12350024 HPSA_05575 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771696.1 1142956 D 907239 CDS YP_005771697.1 385222564 12350026 complement(1147798..1148154) 1 NC_017361.1 COG0335 Ribosomal protein L19; 50S ribosomal protein L19 1148154 rplS 12350026 rplS Helicobacter pylori SouthAfrica7 50S ribosomal protein L19 YP_005771697.1 1147798 R 907239 CDS YP_005771698.1 385222565 12350027 complement(1148175..1148864) 1 NC_017361.1 COG0336 tRNA-(guanine-N1)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 1148864 trmD 12350027 trmD Helicobacter pylori SouthAfrica7 tRNA (guanine-N(1)-)-methyltransferase YP_005771698.1 1148175 R 907239 CDS YP_005771699.1 385222566 12350028 complement(1148865..1149410) 1 NC_017361.1 COG0806 RimM protein, required for 16S rRNA processing; 16S rRNA-processing protein RimM 1149410 rimM 12350028 rimM Helicobacter pylori SouthAfrica7 16S rRNA-processing protein RimM YP_005771699.1 1148865 R 907239 CDS YP_005771700.1 385222567 12350029 complement(1149420..1149773) 1 NC_017361.1 COG1837 Predicted RNA-binding protein (contains KH domain); hypothetical protein 1149773 12350029 HPSA_05605 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771700.1 1149420 R 907239 CDS YP_005771701.1 385222568 12350030 complement(1149789..1150019) 1 NC_017361.1 COG0228 Ribosomal protein S16; 30S ribosomal protein S16 1150019 rpsP 12350030 rpsP Helicobacter pylori SouthAfrica7 30S ribosomal protein S16 YP_005771701.1 1149789 R 907239 CDS YP_005771702.1 385222569 12350031 complement(1150089..1151435) 1 NC_017361.1 COG0541 Signal recognition particle GTPase; signal recognition particle protein 1151435 12350031 HPSA_05615 Helicobacter pylori SouthAfrica7 signal recognition particle protein YP_005771702.1 1150089 R 907239 CDS YP_005771703.1 385222570 12350032 complement(1151450..1154068) 1 NC_017361.1 COG0525 Valyl-tRNA synthetase; valyl-tRNA synthetase 1154068 valS 12350032 valS Helicobacter pylori SouthAfrica7 valyl-tRNA synthetase YP_005771703.1 1151450 R 907239 CDS YP_005771704.1 385222571 12350033 1154193..1154600 1 NC_017361.1 COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1154600 12350033 HPSA_05625 Helicobacter pylori SouthAfrica7 flagellar assembly protein FliW YP_005771704.1 1154193 D 907239 CDS YP_005771705.1 385222572 12350034 1154610..1155671 1 NC_017361.1 COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1155671 murG 12350034 murG Helicobacter pylori SouthAfrica7 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_005771705.1 1154610 D 907239 CDS YP_005771706.1 385222573 12350035 1155781..1157865 1 NC_017361.1 Outer membrane protein HopI; putative signal peptide 1157865 12350035 HPSA_05635 Helicobacter pylori SouthAfrica7 Outer membrane protein HopI; putative signal peptide YP_005771706.1 1155781 D 907239 CDS YP_005771707.1 385222574 12350036 1157889..1161569 1 NC_017361.1 Outer membrane protein HopL; putative signal peptide 1161569 12350036 HPSA_05640 Helicobacter pylori SouthAfrica7 Outer membrane protein HopL; putative signal peptide YP_005771707.1 1157889 D 907239 CDS YP_005771708.1 385222575 12350037 1161589..1162362 1 NC_017361.1 COG0345 Pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 1162362 12350037 HPSA_05645 Helicobacter pylori SouthAfrica7 pyrroline-5-carboxylate reductase YP_005771708.1 1161589 D 907239 CDS YP_005771709.1 385222576 12350038 1162390..1162923 1 NC_017361.1 COG2184 Protein involved in cell division; cell filamentation protein 1162923 12350038 HPSA_05650 Helicobacter pylori SouthAfrica7 cell filamentation protein YP_005771709.1 1162390 D 907239 CDS YP_005771710.1 385222577 12350039 1163095..1163214 1 NC_017361.1 hypothetical protein 1163214 12350039 HPSA_05655 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771710.1 1163095 D 907239 CDS YP_005771711.1 385222578 12350040 complement(1163280..1163702) 1 NC_017361.1 COG0319 Predicted metal-dependent hydrolase; putative metalloprotease 1163702 12350040 HPSA_05660 Helicobacter pylori SouthAfrica7 putative metalloprotease YP_005771711.1 1163280 R 907239 CDS YP_005771712.1 385222579 12350041 complement(1163754..1164248) 1 NC_017361.1 COG0716 Flavodoxins; flavodoxin FldA 1164248 12350041 HPSA_05665 Helicobacter pylori SouthAfrica7 flavodoxin FldA YP_005771712.1 1163754 R 907239 CDS YP_005771713.1 385222580 12350042 complement(1164338..1164919) 1 NC_017361.1 COG0586 Uncharacterized membrane-associated protein; hypothetical protein 1164919 12350042 HPSA_05670 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771713.1 1164338 R 907239 CDS YP_005771714.1 385222581 12350043 1165040..1165231 1 NC_017361.1 COG3197 Uncharacterized protein, possibly involved in nitrogen fixation; cation transport subunit for cbb3-type oxidase 1165231 12350043 HPSA_05675 Helicobacter pylori SouthAfrica7 cation transport subunit for cbb3-type oxidase YP_005771714.1 1165040 D 907239 CDS YP_005771715.1 385222582 12350044 1165250..1166221 1 NC_017361.1 COG0492 Thioredoxin reductase; thioredoxin reductase 1166221 12350044 HPSA_05680 Helicobacter pylori SouthAfrica7 thioredoxin reductase YP_005771715.1 1165250 D 907239 CDS YP_005771716.1 385222583 12350045 complement(1166433..1167545) 1 NC_017361.1 COG0477 Permeases of the major facilitator superfamily; tetracycline resistance protein tetA(P), putative 1167545 12350045 HPSA_05685 Helicobacter pylori SouthAfrica7 tetracycline resistance protein tetA(P), putative YP_005771716.1 1166433 R 907239 CDS YP_005771717.1 385222584 12350046 1167664..1169301 1 NC_017361.1 COG0166 Glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1169301 pgi 12350046 pgi Helicobacter pylori SouthAfrica7 glucose-6-phosphate isomerase YP_005771717.1 1167664 D 907239 CDS YP_005771718.1 385222585 12350047 1169580..1170995 1 NC_017361.1 Outer membrane protein HofH; putative signal peptide 1170995 12350047 HPSA_05695 Helicobacter pylori SouthAfrica7 Outer membrane protein HofH; putative signal peptide YP_005771718.1 1169580 D 907239 CDS YP_005771719.1 385222586 12350048 complement(1171000..1171272) 1 NC_017361.1 hypothetical protein 1171272 12350048 HPSA_05700 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771719.1 1171000 R 907239 CDS YP_005771720.1 385222587 12350049 complement(1171568..1173631) 1 NC_017361.1 COG1966 Carbon starvation protein, predicted membrane protein; carbon starvation protein 1173631 12350049 HPSA_05705 Helicobacter pylori SouthAfrica7 carbon starvation protein YP_005771720.1 1171568 R 907239 CDS YP_005771721.1 385222588 12350050 1173840..1174493 1 NC_017361.1 COG0765 ABC-type amino acid transport system, permease component; glutamine ABC transporter, permease protein 1174493 12350050 HPSA_05710 Helicobacter pylori SouthAfrica7 glutamine ABC transporter, permease protein YP_005771721.1 1173840 D 907239 CDS YP_005771722.1 385222589 12350051 1174495..1175166 1 NC_017361.1 COG0765 ABC-type amino acid transport system, permease component; polar amino acid transport system permease protein 1175166 12350051 HPSA_05715 Helicobacter pylori SouthAfrica7 polar amino acid transport system permease protein YP_005771722.1 1174495 D 907239 CDS YP_005771723.1 385222590 12350052 1175168..1175914 1 NC_017361.1 COG1126 ABC-type polar amino acid transport system, ATPase component; amino acid ABC transporter ATP-binding protein 1175914 12350052 HPSA_05720 Helicobacter pylori SouthAfrica7 amino acid ABC transporter ATP-binding protein YP_005771723.1 1175168 D 907239 CDS YP_005771724.1 385222591 12350053 1175963..1176796 1 NC_017361.1 COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) 1176796 12350053 HPSA_05725 Helicobacter pylori SouthAfrica7 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) YP_005771724.1 1175963 D 907239 CDS YP_005771725.1 385222592 12350054 1176912..1177466 1 NC_017361.1 hypothetical protein 1177466 12350054 HPSA_05730 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771725.1 1176912 D 907239 CDS YP_005771726.1 385222593 12350055 complement(1177870..1179093) 1 NC_017361.1 COG0738 Fucose permease; glucose/galactose transporter 1179093 12350055 HPSA_05735 Helicobacter pylori SouthAfrica7 glucose/galactose transporter YP_005771726.1 1177870 R 907239 CDS YP_005771727.1 385222594 12350056 complement(1179223..1180530) 1 NC_017361.1 COG2252 Permeases; putative permease; putative membrane protein 1180530 12350056 HPSA_05740 Helicobacter pylori SouthAfrica7 putative permease; putative membrane protein YP_005771727.1 1179223 R 907239 CDS YP_005771728.1 385222595 12350057 complement(1180848..1180967) 1 NC_017361.1 hypothetical protein 1180967 12350057 HPSA_05745 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771728.1 1180848 R 907239 CDS YP_005771729.1 385222596 12350058 complement(1180951..1182837) 1 NC_017361.1 Outer membrane protein HopQ; putative signal peptide 1182837 12350058 HPSA_05750 Helicobacter pylori SouthAfrica7 Outer membrane protein HopQ; putative signal peptide YP_005771729.1 1180951 R 907239 CDS YP_005771730.1 385222597 12350059 1182927..1183034 1 NC_017361.1 hypothetical protein 1183034 12350059 HPSA_05755 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771730.1 1182927 D 907239 CDS YP_005771731.1 385222598 12350060 1183090..1183173 1 NC_017361.1 hypothetical protein 1183173 12350060 HPSA_05760 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771731.1 1183090 D 907239 CDS YP_005771732.1 385222599 12350061 1183516..1184814 1 NC_017361.1 COG2890 Methylase of polypeptide chain release factors; hypothetical protein 1184814 12350061 HPSA_05765 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771732.1 1183516 D 907239 CDS YP_005771733.1 385222600 12350062 1184774..1185286 1 NC_017361.1 hypothetical protein 1185286 12350062 HPSA_05770 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771733.1 1184774 D 907239 CDS YP_005771734.1 385222601 12350063 complement(1185368..1186075) 1 NC_017361.1 COG0813 Purine-nucleoside phosphorylase; purine-nucleoside phosphorylase 1186075 12350063 HPSA_05775 Helicobacter pylori SouthAfrica7 purine-nucleoside phosphorylase YP_005771734.1 1185368 R 907239 CDS YP_005771735.1 385222602 12350064 complement(1186072..1187313) 1 NC_017361.1 COG1015 Phosphopentomutase; phosphopentomutase 1187313 12350064 HPSA_05780 Helicobacter pylori SouthAfrica7 phosphopentomutase YP_005771735.1 1186072 R 907239 CDS YP_005771736.1 385222603 12350065 complement(1187325..1188581) 1 NC_017361.1 COG1972 Nucleoside permease; pyrimidine nucleoside transport protein 1188581 12350065 HPSA_05785 Helicobacter pylori SouthAfrica7 pyrimidine nucleoside transport protein YP_005771736.1 1187325 R 907239 CDS YP_005771737.1 385222604 12350067 complement(1188833..1189834) 1 NC_017361.1 COG1076 DnaJ-domain-containing proteins 1; heat shock protein DnaJ-like protein 1189834 12350067 HPSA_05790 Helicobacter pylori SouthAfrica7 heat shock protein DnaJ-like protein YP_005771737.1 1188833 R 907239 CDS YP_005771738.1 385222605 12350068 complement(1189933..1190055) 1 NC_017361.1 hypothetical protein 1190055 12350068 HPSA_05795 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771738.1 1189933 R 907239 CDS YP_005771739.1 385222606 12350069 1189979..1191310 1 NC_017361.1 COG0477 Permeases of the major facilitator superfamily; multidrug-efflux transporter 1191310 12350069 HPSA_05800 Helicobacter pylori SouthAfrica7 multidrug-efflux transporter YP_005771739.1 1189979 D 907239 CDS YP_005771740.1 385222607 12350070 1191326..1192087 1 NC_017361.1 COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control; hypothetical protein 1192087 12350070 HPSA_05805 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771740.1 1191326 D 907239 CDS YP_005771741.1 385222608 12350071 complement(1192092..1193243) 1 NC_017361.1 COG0475 Kef-type K+ transport systems, membrane components; Na+/H+ antiporter 1193243 12350071 HPSA_05810 Helicobacter pylori SouthAfrica7 Na+/H+ antiporter YP_005771741.1 1192092 R 907239 CDS YP_005771742.1 385222609 12350072 complement(1193269..1194648) 1 NC_017361.1 COG0534 Na+-driven multidrug efflux pump; hypothetical protein 1194648 12350072 HPSA_05815 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771742.1 1193269 R 907239 CDS YP_005771743.1 385222610 12350073 complement(1194818..1195993) 1 NC_017361.1 COG2814 Arabinose efflux permease; sugar efflux transporter 1195993 12350073 HPSA_05820 Helicobacter pylori SouthAfrica7 sugar efflux transporter YP_005771743.1 1194818 R 907239 CDS YP_005771744.1 385222611 12350074 1196271..1197014 1 NC_017361.1 COG3338 Carbonic anhydrase; Alpha-carbonic anhydrase; putative signal peptide 1197014 12350074 HPSA_05825 Helicobacter pylori SouthAfrica7 Alpha-carbonic anhydrase; putative signal peptide YP_005771744.1 1196271 D 907239 CDS YP_005771745.1 385222612 12350075 complement(1197242..1198291) 1 NC_017361.1 hypothetical protein 1198291 12350075 HPSA_05830 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771745.1 1197242 R 907239 CDS YP_005771746.1 385222613 12350076 complement(1198709..1199749) 1 NC_017361.1 COG0136 Aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 1199749 12350076 HPSA_05835 Helicobacter pylori SouthAfrica7 aspartate-semialdehyde dehydrogenase YP_005771746.1 1198709 R 907239 CDS YP_005771747.1 385222614 12350077 complement(1199736..1201064) 1 NC_017361.1 COG0124 Histidyl-tRNA synthetase; histidyl-tRNA synthetase 1201064 hisS 12350077 hisS Helicobacter pylori SouthAfrica7 histidyl-tRNA synthetase YP_005771747.1 1199736 R 907239 CDS YP_005771748.1 385222615 12350078 1201126..1202175 1 NC_017361.1 COG0859 ADP-heptose:LPS heptosyltransferase; ADP-heptose--LPS heptosyltransferase II 1202175 12350078 HPSA_05845 Helicobacter pylori SouthAfrica7 ADP-heptose--LPS heptosyltransferase II YP_005771748.1 1201126 D 907239 CDS YP_005771749.1 385222616 12350079 complement(1202309..1202527) 1 NC_017361.1 hypothetical protein 1202527 12350079 HPSA_05850 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771749.1 1202309 R 907239 CDS YP_005771750.1 385222617 12350080 complement(1203806..1203907) 1 NC_017361.1 hypothetical protein 1203907 12350080 HPSA_05870 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771750.1 1203806 R 907239 CDS YP_005771751.1 385222618 12350081 complement(1204217..1206295) 1 NC_017361.1 COG0480 Translation elongation factors (GTPases); elongation factor G 1206295 12350081 HPSA_05875 Helicobacter pylori SouthAfrica7 elongation factor G YP_005771751.1 1204217 R 907239 CDS YP_005771752.1 385222619 12350082 complement(1206307..1206774) 1 NC_017361.1 COG0049 Ribosomal protein S7; 30S ribosomal protein S7 1206774 12350082 HPSA_05880 Helicobacter pylori SouthAfrica7 30S ribosomal protein S7 YP_005771752.1 1206307 R 907239 CDS YP_005771753.1 385222620 12350083 complement(1206790..1207197) 1 NC_017361.1 COG0048 Ribosomal protein S12; 30S ribosomal protein S12 1207197 rpsL 12350083 rpsL Helicobacter pylori SouthAfrica7 30S ribosomal protein S12 YP_005771753.1 1206790 R 907239 CDS YP_005771754.1 385222621 12350084 complement(1207286..1215958) 1 NC_017361.1 COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-directed RNA polymerase subunit beta/beta' 1215958 12350084 HPSA_05890 Helicobacter pylori SouthAfrica7 DNA-directed RNA polymerase subunit beta/beta' YP_005771754.1 1207286 R 907239 CDS YP_005771755.1 385222622 12350085 complement(1216178..1216555) 1 NC_017361.1 COG0222 Ribosomal protein L7/L12; 50S ribosomal protein L7/L12 1216555 rplL 12350085 rplL Helicobacter pylori SouthAfrica7 50S ribosomal protein L7/L12 YP_005771755.1 1216178 R 907239 CDS YP_005771756.1 385222623 12350086 complement(1216598..1217080) 1 NC_017361.1 COG0244 Ribosomal protein L10; 50S ribosomal protein L10 1217080 rplJ 12350086 rplJ Helicobacter pylori SouthAfrica7 50S ribosomal protein L10 YP_005771756.1 1216598 R 907239 CDS YP_005771757.1 385222624 12350087 complement(1217188..1217892) 1 NC_017361.1 COG0081 Ribosomal protein L1; 50S ribosomal protein L1 1217892 rplA 12350087 rplA Helicobacter pylori SouthAfrica7 50S ribosomal protein L1 YP_005771757.1 1217188 R 907239 CDS YP_005771758.1 385222625 12350088 complement(1217942..1218367) 1 NC_017361.1 COG0080 Ribosomal protein L11; 50S ribosomal protein L11 1218367 rplK 12350088 rplK Helicobacter pylori SouthAfrica7 50S ribosomal protein L11 YP_005771758.1 1217942 R 907239 CDS YP_005771759.1 385222626 12350089 complement(1218384..1218911) 1 NC_017361.1 COG0250 Transcription antiterminator; transcription antitermination protein NusG 1218911 nusG 12350089 nusG Helicobacter pylori SouthAfrica7 transcription antitermination protein NusG YP_005771759.1 1218384 R 907239 CDS YP_005771760.1 385222627 12350090 complement(1218941..1219120) 1 NC_017361.1 COG0690 Preprotein translocase subunit SecE; preprotein translocase subunit SecE 1219120 secE 12350090 secE Helicobacter pylori SouthAfrica7 preprotein translocase subunit SecE YP_005771760.1 1218941 R 907239 CDS YP_005771761.1 385222628 12350092 complement(1219377..1219535) 1 NC_017361.1 COG0267 Ribosomal protein L33; 50S ribosomal protein L33 1219535 rpmG 12350092 rpmG Helicobacter pylori SouthAfrica7 50S ribosomal protein L33 YP_005771761.1 1219377 R 907239 CDS YP_005771762.1 385222629 12350093 complement(1219592..1220791) 1 NC_017361.1 COG0050 GTPases - translation elongation factors; elongation factor Tu 1220791 12350093 HPSA_05930 Helicobacter pylori SouthAfrica7 elongation factor Tu YP_005771762.1 1219592 R 907239 CDS YP_005771763.1 385222630 12350098 1221486..1223222 1 NC_017361.1 COG1132 ABC-type multidrug transport system, ATPase and permease components; ABC-transporter, ATP-binding domain 1223222 12350098 HPSA_05935 Helicobacter pylori SouthAfrica7 ABC-transporter, ATP-binding domain YP_005771763.1 1221486 D 907239 CDS YP_005771764.1 385222631 12350099 complement(1223229..1223897) 1 NC_017361.1 COG0546 Predicted phosphatases; hypothetical protein 1223897 12350099 HPSA_05940 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771764.1 1223229 R 907239 CDS YP_005771765.1 385222632 12350102 complement(1224389..1224706) 1 NC_017361.1 COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K; F0F1 ATP synthase subunit C 1224706 12350102 HPSA_05950 Helicobacter pylori SouthAfrica7 F0F1 ATP synthase subunit C YP_005771765.1 1224389 R 907239 CDS YP_005771766.1 385222633 12350104 complement(1224838..1226904) 1 NC_017361.1 COG1185 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 1226904 12350104 HPSA_05955 Helicobacter pylori SouthAfrica7 polynucleotide phosphorylase/polyadenylase YP_005771766.1 1224838 R 907239 CDS YP_005771767.1 385222634 12350106 complement(1226907..1227611) 1 NC_017361.1 COG1926 Predicted phosphoribosyltransferases; hypothetical protein 1227611 12350106 HPSA_05960 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771767.1 1226907 R 907239 CDS YP_005771768.1 385222635 12350108 complement(1227625..1229886) 1 NC_017361.1 COG1452 Organic solvent tolerance protein OstA; organic solvent tolerance protein 1229886 12350108 HPSA_05965 Helicobacter pylori SouthAfrica7 organic solvent tolerance protein YP_005771768.1 1227625 R 907239 CDS YP_005771769.1 385222636 12350110 complement(1229889..1230368) 1 NC_017361.1 hypothetical protein 1230368 12350110 HPSA_05970 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771769.1 1229889 R 907239 CDS YP_005771770.1 385222637 12350111 complement(1230408..1231682) 1 NC_017361.1 COG0151 Phosphoribosylamine-glycine ligase; phosphoribosylamine--glycine ligase 1231682 12350111 HPSA_05975 Helicobacter pylori SouthAfrica7 phosphoribosylamine--glycine ligase YP_005771770.1 1230408 R 907239 CDS YP_005771771.1 385222638 12350112 complement(1232429..1232632) 1 NC_017361.1 hypothetical protein 1232632 12350112 HPSA_05980 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771771.1 1232429 R 907239 CDS YP_005771772.1 385222639 12350114 1232633..1232785 1 NC_017361.1 hypothetical protein 1232785 12350114 HPSA_05985 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771772.1 1232633 D 907239 CDS YP_005771773.1 385222640 12350116 complement(1233049..1233735) 1 NC_017361.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 1233735 12350116 HPSA_05990 Helicobacter pylori SouthAfrica7 ABC transporter ATP-binding protein YP_005771773.1 1233049 R 907239 CDS YP_005771774.1 385222641 12350117 complement(1233729..1234436) 1 NC_017361.1 COG0020 Undecaprenyl pyrophosphate synthase; undecaprenyl pyrophosphate synthase 1234436 12350117 HPSA_05995 Helicobacter pylori SouthAfrica7 undecaprenyl pyrophosphate synthase YP_005771774.1 1233729 R 907239 CDS YP_005771775.1 385222642 12350118 complement(1234477..1237317) 1 NC_017361.1 COG0277 FAD/FMN-containing dehydrogenases; D-lactate dehydrogenase 1237317 12350118 HPSA_06000 Helicobacter pylori SouthAfrica7 D-lactate dehydrogenase YP_005771775.1 1234477 R 907239 CDS YP_005771776.1 385222643 12350119 1237389..1237727 1 NC_017361.1 COG0607 Rhodanese-related sulfurtransferase; hypothetical protein 1237727 12350119 HPSA_06005 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771776.1 1237389 D 907239 CDS YP_005771777.1 385222644 12350120 1237730..1238404 1 NC_017361.1 COG1587 Uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 1238404 hemD 12350120 hemD Helicobacter pylori SouthAfrica7 uroporphyrinogen-III synthase YP_005771777.1 1237730 D 907239 CDS YP_005771778.1 385222645 12350121 1238450..1238842 1 NC_017361.1 COG0239 Integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB 1238842 12350121 HPSA_06015 Helicobacter pylori SouthAfrica7 camphor resistance protein CrcB YP_005771778.1 1238450 D 907239 CDS YP_005771779.1 385222646 12350122 complement(1238901..1239938) 1 NC_017361.1 COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases; coproporphyrinogen III oxidase 1239938 12350122 HPSA_06020 Helicobacter pylori SouthAfrica7 coproporphyrinogen III oxidase YP_005771779.1 1238901 R 907239 CDS YP_005771780.1 385222647 12350123 1240032..1240322 1 NC_017361.1 COG2863 Cytochrome c553; cytochrome c-553 1240322 12350123 HPSA_06025 Helicobacter pylori SouthAfrica7 cytochrome c-553 YP_005771780.1 1240032 D 907239 CDS YP_005771781.1 385222648 12350124 1240482..1240955 1 NC_017361.1 COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; dinucleoside polyphosphate hydrolase 1240955 12350124 HPSA_06030 Helicobacter pylori SouthAfrica7 dinucleoside polyphosphate hydrolase YP_005771781.1 1240482 D 907239 CDS YP_005771782.1 385222649 12350125 1240949..1242166 1 NC_017361.1 COG0527 Aspartokinases; aspartate kinase 1242166 12350125 HPSA_06035 Helicobacter pylori SouthAfrica7 aspartate kinase YP_005771782.1 1240949 D 907239 CDS YP_005771783.1 385222650 12350126 1242163..1242705 1 NC_017361.1 hypothetical protein 1242705 12350126 HPSA_06040 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771783.1 1242163 D 907239 CDS YP_005771784.1 385222651 12350127 1242702..1243358 1 NC_017361.1 COG0470 ATPase involved in DNA replication; DNA polymerase III subunit delta' 1243358 12350127 HPSA_06045 Helicobacter pylori SouthAfrica7 DNA polymerase III subunit delta' YP_005771784.1 1242702 D 907239 CDS YP_005771785.1 385222652 12350128 1243355..1244497 1 NC_017361.1 COG0294 Dihydropteroate synthase and related enzymes; dihydropteroate synthase 1244497 12350128 HPSA_06050 Helicobacter pylori SouthAfrica7 dihydropteroate synthase YP_005771785.1 1243355 D 907239 CDS YP_005771786.1 385222653 12350129 complement(1244811..1245272) 1 NC_017361.1 hypothetical protein 1245272 12350129 HPSA_06055 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771786.1 1244811 R 907239 CDS YP_005771787.1 385222654 12350130 1245677..1246585 1 NC_017361.1 COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily; putative membrane transport protein 1246585 12350130 HPSA_06060 Helicobacter pylori SouthAfrica7 putative membrane transport protein YP_005771787.1 1245677 D 907239 CDS YP_005771788.1 385222655 12350131 1246576..1247820 1 NC_017361.1 hypothetical protein 1247820 12350131 HPSA_06065 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771788.1 1246576 D 907239 CDS YP_005771789.1 385222656 12350132 1247898..1248449 1 NC_017361.1 COG2952 Uncharacterized protein conserved in bacteria; hypothetical protein 1248449 12350132 HPSA_06070 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771789.1 1247898 D 907239 CDS YP_005771790.1 385222657 12350133 1248449..1249576 1 NC_017361.1 COG0505 Carbamoylphosphate synthase small subunit; carbamoyl phosphate synthase small subunit 1249576 12350133 HPSA_06075 Helicobacter pylori SouthAfrica7 carbamoyl phosphate synthase small subunit YP_005771790.1 1248449 D 907239 CDS YP_005771791.1 385222658 12350134 1249742..1250746 1 NC_017361.1 COG0388 Predicted amidohydrolase; formamidase 1250746 amiF 12350134 amiF Helicobacter pylori SouthAfrica7 formamidase YP_005771791.1 1249742 D 907239 CDS YP_005771792.1 385222659 12350135 complement(1251228..1251704) 1 NC_017361.1 hypothetical protein 1251704 12350135 HPSA_06085 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771792.1 1251228 R 907239 CDS YP_005771793.1 385222660 12350136 1251703..1251807 1 NC_017361.1 hypothetical protein 1251807 12350136 HPSA_06090 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771793.1 1251703 D 907239 CDS YP_005771794.1 385222661 12350137 complement(1251828..1252391) 1 NC_017361.1 COG0424 Nucleotide-binding protein implicated in inhibition of septum formation; Maf-like protein 1252391 12350137 HPSA_06095 Helicobacter pylori SouthAfrica7 Maf-like protein YP_005771794.1 1251828 R 907239 CDS YP_005771795.1 385222662 12350138 complement(1252393..1254936) 1 NC_017361.1 COG0013 Alanyl-tRNA synthetase; alanyl-tRNA synthetase 1254936 alaS 12350138 alaS Helicobacter pylori SouthAfrica7 alanyl-tRNA synthetase YP_005771795.1 1252393 R 907239 CDS YP_005771796.1 385222663 12350139 1255055..1255285 1 NC_017361.1 COG2841 Uncharacterized protein conserved in bacteria; hypothetical protein 1255285 12350139 HPSA_06105 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771796.1 1255055 D 907239 CDS YP_005771797.1 385222664 12350140 complement(1256041..1258143) 1 NC_017361.1 outer membrane protein BabA 1258143 12350140 HPSA_06110 Helicobacter pylori SouthAfrica7 outer membrane protein BabA YP_005771797.1 1256041 R 907239 CDS YP_005771798.1 385222665 12350141 complement(1258554..1258811) 1 NC_017361.1 COG0238 Ribosomal protein S18; 30S ribosomal protein S18 1258811 rpsR 12350141 rpsR Helicobacter pylori SouthAfrica7 30S ribosomal protein S18 YP_005771798.1 1258554 R 907239 CDS YP_005771799.1 385222666 12350142 complement(1258835..1259380) 1 NC_017361.1 COG0629 Single-stranded DNA-binding protein; single-stranded DNA-binding protein 1259380 12350142 HPSA_06120 Helicobacter pylori SouthAfrica7 single-stranded DNA-binding protein YP_005771799.1 1258835 R 907239 CDS YP_005771800.1 385222667 12350143 complement(1259397..1259825) 1 NC_017361.1 COG0360 Ribosomal protein S6; 30S ribosomal protein S6 1259825 rpsF 12350143 rpsF Helicobacter pylori SouthAfrica7 30S ribosomal protein S6 YP_005771800.1 1259397 R 907239 CDS YP_005771801.1 385222668 12350144 complement(1259978..1261000) 1 NC_017361.1 COG0593 ATPase involved in DNA replication initiation; DNA polymerase III subunit delta 1261000 12350144 HPSA_06130 Helicobacter pylori SouthAfrica7 DNA polymerase III subunit delta YP_005771801.1 1259978 R 907239 CDS YP_005771802.1 385222669 12350145 complement(1260990..1262924) 1 NC_017361.1 COG0557 Exoribonuclease R; ribonuclease R 1262924 12350145 HPSA_06135 Helicobacter pylori SouthAfrica7 ribonuclease R YP_005771802.1 1260990 R 907239 CDS YP_005771803.1 385222670 12350146 complement(1262909..1263715) 1 NC_017361.1 COG0169 Shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 1263715 aroE 12350146 aroE Helicobacter pylori SouthAfrica7 shikimate 5-dehydrogenase YP_005771803.1 1262909 R 907239 CDS YP_005771804.1 385222671 12350147 complement(1263723..1264307) 1 NC_017361.1 hypothetical protein 1264307 12350147 HPSA_06145 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771804.1 1263723 R 907239 CDS YP_005771805.1 385222672 12350148 complement(1264328..1265374) 1 NC_017361.1 COG4174 ABC-type uncharacterized transport system, permease component; oligopeptide ABC transporter permease 1265374 12350148 HPSA_06150 Helicobacter pylori SouthAfrica7 oligopeptide ABC transporter permease YP_005771805.1 1264328 R 907239 CDS YP_005771806.1 385222673 12350149 complement(1265371..1267161) 1 NC_017361.1 COG4166 ABC-type oligopeptide transport system, periplasmic component; hypothetical protein 1267161 12350149 HPSA_06155 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771806.1 1265371 R 907239 CDS YP_005771807.1 385222674 12350150 complement(1267158..1268138) 1 NC_017361.1 COG0180 Tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase 1268138 12350150 HPSA_06160 Helicobacter pylori SouthAfrica7 tryptophanyl-tRNA synthetase YP_005771807.1 1267158 R 907239 CDS YP_005771808.1 385222675 12350151 complement(1268210..1268929) 1 NC_017361.1 COG0500 SAM-dependent methyltransferases; biotin synthesis protein BioC 1268929 12350151 HPSA_06165 Helicobacter pylori SouthAfrica7 biotin synthesis protein BioC YP_005771808.1 1268210 R 907239 CDS YP_005771809.1 385222676 12350152 1269052..1269633 1 NC_017361.1 COG1314 Preprotein translocase subunit SecG; preprotein translocase subunit SecG 1269633 secG 12350152 secG Helicobacter pylori SouthAfrica7 preprotein translocase subunit SecG YP_005771809.1 1269052 D 907239 CDS YP_005771810.1 385222677 12350153 1269633..1270190 1 NC_017361.1 COG0233 Ribosome recycling factor; ribosome recycling factor 1270190 frr 12350153 frr Helicobacter pylori SouthAfrica7 ribosome recycling factor YP_005771810.1 1269633 D 907239 CDS YP_005771811.1 385222678 12350154 1270195..1270800 1 NC_017361.1 COG0461 Orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 1270800 pyrE 12350154 pyrE Helicobacter pylori SouthAfrica7 orotate phosphoribosyltransferase YP_005771811.1 1270195 D 907239 CDS YP_005771812.1 385222679 12350155 1270899..1271246 1 NC_017361.1 COG1714 Predicted membrane protein/domain; hypothetical protein 1271246 12350155 HPSA_06185 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771812.1 1270899 D 907239 CDS YP_005771813.1 385222680 12350156 1271243..1271932 1 NC_017361.1 COG0846 NAD-dependent protein deacetylases, SIR2 family; NAD-dependent deacetylase 1271932 12350156 HPSA_06190 Helicobacter pylori SouthAfrica7 NAD-dependent deacetylase YP_005771813.1 1271243 D 907239 CDS YP_005771814.1 385222681 12350157 1272295..1272696 1 NC_017361.1 COG0838 NADH:ubiquinone oxidoreductase subunit 3 (chain A); NADH dehydrogenase subunit A 1272696 12350157 HPSA_06195 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit A YP_005771814.1 1272295 D 907239 CDS YP_005771815.1 385222682 12350158 1272696..1273175 1 NC_017361.1 COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases; NADH dehydrogenase subunit B 1273175 12350158 HPSA_06200 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit B YP_005771815.1 1272696 D 907239 CDS YP_005771816.1 385222683 12350159 1273175..1273972 1 NC_017361.1 COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit; NADH dehydrogenase subunit C 1273972 12350159 HPSA_06205 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit C YP_005771816.1 1273175 D 907239 CDS YP_005771817.1 385222684 12350160 1273974..1275203 1 NC_017361.1 COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7; NADH dehydrogenase subunit D 1275203 12350160 HPSA_06210 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit D YP_005771817.1 1273974 D 907239 CDS YP_005771818.1 385222685 12350161 1275200..1275430 1 NC_017361.1 NADH dehydrogenase I subunit E 1275430 12350161 HPSA_06215 Helicobacter pylori SouthAfrica7 NADH dehydrogenase I subunit E YP_005771818.1 1275200 D 907239 CDS YP_005771819.1 385222686 12350162 1275433..1276419 1 NC_017361.1 NADH dehydrogenase I subunit F 1276419 12350162 HPSA_06220 Helicobacter pylori SouthAfrica7 NADH dehydrogenase I subunit F YP_005771819.1 1275433 D 907239 CDS YP_005771820.1 385222687 12350163 1276416..1278965 1 NC_017361.1 COG1034 NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G); NADH dehydrogenase subunit G 1278965 12350163 HPSA_06225 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit G YP_005771820.1 1276416 D 907239 CDS YP_005771821.1 385222688 12350164 1278962..1279951 1 NC_017361.1 COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H); NADH dehydrogenase subunit H 1279951 12350164 HPSA_06230 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit H YP_005771821.1 1278962 D 907239 CDS YP_005771822.1 385222689 12350165 1279961..1280623 1 NC_017361.1 COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I); NADH dehydrogenase subunit I 1280623 12350165 HPSA_06235 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit I YP_005771822.1 1279961 D 907239 CDS YP_005771823.1 385222690 12350166 1280616..1281164 1 NC_017361.1 COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J); NADH dehydrogenase subunit J 1281164 12350166 HPSA_06240 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit J YP_005771823.1 1280616 D 907239 CDS YP_005771824.1 385222691 12350167 1281161..1281463 1 NC_017361.1 COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K); NADH dehydrogenase subunit K 1281463 12350167 HPSA_06245 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit K YP_005771824.1 1281161 D 907239 CDS YP_005771825.1 385222692 12350742 1281466..1283304 1 NC_017361.1 COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit; NADH dehydrogenase subunit L 1283304 12350742 HPSA_06250 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit L YP_005771825.1 1281466 D 907239 CDS YP_005771826.1 385222693 12350743 1283308..1284846 1 NC_017361.1 COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M); NADH dehydrogenase subunit M 1284846 12350743 HPSA_06255 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit M YP_005771826.1 1283308 D 907239 CDS YP_005771827.1 385222694 12350744 1284833..1286311 1 NC_017361.1 COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); NADH dehydrogenase subunit N 1286311 12350744 HPSA_06260 Helicobacter pylori SouthAfrica7 NADH dehydrogenase subunit N YP_005771827.1 1284833 D 907239 CDS YP_005771828.1 385222695 12350745 1286301..1288712 1 NC_017361.1 COG1729 Uncharacterized protein conserved in bacteria; paralysed flagella protein 1288712 12350745 HPSA_06265 Helicobacter pylori SouthAfrica7 paralysed flagella protein YP_005771828.1 1286301 D 907239 CDS YP_005771829.1 385222696 12350746 1288714..1290090 1 NC_017361.1 COG1109 Phosphomannomutase; hypothetical protein 1290090 12350746 HPSA_06270 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771829.1 1288714 D 907239 CDS YP_005771830.1 385222697 12350747 1290657..1291001 1 NC_017361.1 hypothetical protein 1291001 12350747 HPSA_06275 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771830.1 1290657 D 907239 CDS YP_005771831.1 385222698 12350748 complement(1291164..1291952) 1 NC_017361.1 COG0159 Tryptophan synthase alpha chain; tryptophan synthase subunit alpha 1291952 trpA 12350748 trpA Helicobacter pylori SouthAfrica7 tryptophan synthase subunit alpha YP_005771831.1 1291164 R 907239 CDS YP_005771832.1 385222699 12350749 complement(1291949..1293130) 1 NC_017361.1 COG0133 Tryptophan synthase beta chain; tryptophan synthase subunit beta 1293130 12350749 HPSA_06285 Helicobacter pylori SouthAfrica7 tryptophan synthase subunit beta YP_005771832.1 1291949 R 907239 CDS YP_005771833.1 385222700 12350750 complement(1293132..1294490) 1 NC_017361.1 COG0134 Indole-3-glycerol phosphate synthase; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1294490 12350750 HPSA_06290 Helicobacter pylori SouthAfrica7 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_005771833.1 1293132 R 907239 CDS YP_005771834.1 385222701 12350751 complement(1294483..1295490) 1 NC_017361.1 COG0547 Anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase 1295490 trpD 12350751 trpD Helicobacter pylori SouthAfrica7 anthranilate phosphoribosyltransferase YP_005771834.1 1294483 R 907239 CDS YP_005771835.1 385222702 12350752 complement(1295487..1296071) 1 NC_017361.1 COG0512 Anthranilate/para-aminobenzoate synthases component II; anthranilate synthase component II 1296071 12350752 HPSA_06300 Helicobacter pylori SouthAfrica7 anthranilate synthase component II YP_005771835.1 1295487 R 907239 CDS YP_005771836.1 385222703 12350753 complement(1296068..1297570) 1 NC_017361.1 COG0147 Anthranilate/para-aminobenzoate synthases component I; anthranilate synthase component I 1297570 12350753 HPSA_06305 Helicobacter pylori SouthAfrica7 anthranilate synthase component I YP_005771836.1 1296068 R 907239 CDS YP_005771837.1 385222704 12350754 complement(1297811..1298869) 1 NC_017361.1 COG0859 ADP-heptose:LPS heptosyltransferase; hypothetical protein 1298869 12350754 HPSA_06310 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771837.1 1297811 R 907239 CDS YP_005771838.1 385222705 12350755 complement(1298935..1299627) 1 NC_017361.1 COG2503 Predicted secreted acid phosphatase; acid phosphatase lipoprotein 1299627 12350755 HPSA_06315 Helicobacter pylori SouthAfrica7 acid phosphatase lipoprotein YP_005771838.1 1298935 R 907239 CDS YP_005771839.1 385222706 12350756 1299797..1300345 1 NC_017361.1 COG2353 Uncharacterized conserved protein; hypothetical protein 1300345 12350756 HPSA_06320 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771839.1 1299797 D 907239 CDS YP_005771840.1 385222707 12350757 1300964..1301620 1 NC_017361.1 COG0819 Putative transcription activator; putative transcriptional regulator 1301620 12350757 HPSA_06325 Helicobacter pylori SouthAfrica7 putative transcriptional regulator YP_005771840.1 1300964 D 907239 CDS YP_005771841.1 385222708 12350758 1301741..1302403 1 NC_017361.1 COG3201 Nicotinamide mononucleotide transporter; nicotinamide mononucleotide transporter 1302403 12350758 HPSA_06330 Helicobacter pylori SouthAfrica7 nicotinamide mononucleotide transporter YP_005771841.1 1301741 D 907239 CDS YP_005771842.1 385222709 12350759 1302391..1303005 1 NC_017361.1 COG1564 Thiamine pyrophosphokinase; thiamine pyrophosphokinase 1303005 12350759 HPSA_06335 Helicobacter pylori SouthAfrica7 thiamine pyrophosphokinase YP_005771842.1 1302391 D 907239 CDS YP_005771843.1 385222710 12350760 complement(1303207..1303530) 1 NC_017361.1 hypothetical protein 1303530 12350760 HPSA_06340 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771843.1 1303207 R 907239 CDS YP_005771844.1 385222711 12350761 complement(1303553..1304362) 1 NC_017361.1 hypothetical protein 1304362 12350761 HPSA_06345 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771844.1 1303553 R 907239 CDS YP_005771845.1 385222712 12350762 1304646..1304822 1 NC_017361.1 hypothetical protein 1304822 12350762 HPSA_06350 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771845.1 1304646 D 907239 CDS YP_005771846.1 385222713 12350763 complement(1304962..1305312) 1 NC_017361.1 COG0203 Ribosomal protein L17; 50S ribosomal protein L17 1305312 rplQ 12350763 rplQ Helicobacter pylori SouthAfrica7 50S ribosomal protein L17 YP_005771846.1 1304962 R 907239 CDS YP_005771847.1 385222714 12350764 complement(1305312..1306346) 1 NC_017361.1 COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-directed RNA polymerase subunit alpha 1306346 12350764 HPSA_06360 Helicobacter pylori SouthAfrica7 DNA-directed RNA polymerase subunit alpha YP_005771847.1 1305312 R 907239 CDS YP_005771848.1 385222715 12350765 complement(1306358..1306984) 1 NC_017361.1 COG0522 Ribosomal protein S4 and related proteins; 30S ribosomal protein S4 1306984 rpsD 12350765 rpsD Helicobacter pylori SouthAfrica7 30S ribosomal protein S4 YP_005771848.1 1306358 R 907239 CDS YP_005771849.1 385222716 12350766 complement(1306994..1307389) 1 NC_017361.1 COG0100 Ribosomal protein S11; 30S ribosomal protein S11 1307389 12350766 HPSA_06370 Helicobacter pylori SouthAfrica7 30S ribosomal protein S11 YP_005771849.1 1306994 R 907239 CDS YP_005771850.1 385222717 12350767 complement(1307412..1307774) 1 NC_017361.1 COG0099 Ribosomal protein S13; 30S ribosomal protein S13 1307774 rpsM 12350767 rpsM Helicobacter pylori SouthAfrica7 30S ribosomal protein S13 YP_005771850.1 1307412 R 907239 CDS YP_005771851.1 385222718 12350768 complement(1307778..1307891) 1 NC_017361.1 COG0257 Ribosomal protein L36; hypothetical protein 1307891 12350768 HPSA_06380 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771851.1 1307778 R 907239 CDS YP_005771852.1 385222719 12350769 complement(1307970..1308188) 1 NC_017361.1 COG0361 Translation initiation factor 1 (IF-1); translation initiation factor IF-1 1308188 infA 12350769 infA Helicobacter pylori SouthAfrica7 translation initiation factor IF-1 YP_005771852.1 1307970 R 907239 CDS YP_005771853.1 385222720 12350770 complement(1308188..1308949) 1 NC_017361.1 COG0024 Methionine aminopeptidase; methionine aminopeptidase 1308949 12350770 HPSA_06390 Helicobacter pylori SouthAfrica7 methionine aminopeptidase YP_005771853.1 1308188 R 907239 CDS YP_005771854.1 385222721 12350771 complement(1308949..1310211) 1 NC_017361.1 COG0201 Preprotein translocase subunit SecY; preprotein translocase subunit SecY 1310211 secY 12350771 secY Helicobacter pylori SouthAfrica7 preprotein translocase subunit SecY YP_005771854.1 1308949 R 907239 CDS YP_005771855.1 385222722 12350772 complement(1310254..1310655) 1 NC_017361.1 COG0200 Ribosomal protein L15; 50S ribosomal protein L15 1310655 rplO 12350772 rplO Helicobacter pylori SouthAfrica7 50S ribosomal protein L15 YP_005771855.1 1310254 R 907239 CDS YP_005771856.1 385222723 12350773 complement(1310673..1311116) 1 NC_017361.1 COG0098 Ribosomal protein S5; 30S ribosomal protein S5 1311116 rpsE 12350773 rpsE Helicobacter pylori SouthAfrica7 30S ribosomal protein S5 YP_005771856.1 1310673 R 907239 CDS YP_005771857.1 385222724 12350774 complement(1311131..1311487) 1 NC_017361.1 COG0256 Ribosomal protein L18; 50S ribosomal protein L18 1311487 rplR 12350774 rplR Helicobacter pylori SouthAfrica7 50S ribosomal protein L18 YP_005771857.1 1311131 R 907239 CDS YP_005771858.1 385222725 12350775 complement(1311501..1312037) 1 NC_017361.1 COG0097 Ribosomal protein L6P/L9E; 50S ribosomal protein L6 1312037 rplF 12350775 rplF Helicobacter pylori SouthAfrica7 50S ribosomal protein L6 YP_005771858.1 1311501 R 907239 CDS YP_005771859.1 385222726 12350776 complement(1312048..1312443) 1 NC_017361.1 COG0096 Ribosomal protein S8; 30S ribosomal protein S8 1312443 rpsH 12350776 rpsH Helicobacter pylori SouthAfrica7 30S ribosomal protein S8 YP_005771859.1 1312048 R 907239 CDS YP_005771860.1 385222727 12350777 complement(1312453..1312638) 1 NC_017361.1 COG0199 Ribosomal protein S14; 30S ribosomal protein S14 1312638 rpsN 12350777 rpsN Helicobacter pylori SouthAfrica7 30S ribosomal protein S14 YP_005771860.1 1312453 R 907239 CDS YP_005771861.1 385222728 12350778 complement(1312648..1313193) 1 NC_017361.1 COG0094 Ribosomal protein L5; 50S ribosomal protein L5 1313193 rplE 12350778 rplE Helicobacter pylori SouthAfrica7 50S ribosomal protein L5 YP_005771861.1 1312648 R 907239 CDS YP_005771862.1 385222729 12350779 complement(1313205..1313426) 1 NC_017361.1 COG0198 Ribosomal protein L24; 50S ribosomal protein L24 1313426 rplX 12350779 rplX Helicobacter pylori SouthAfrica7 50S ribosomal protein L24 YP_005771862.1 1313205 R 907239 CDS YP_005771863.1 385222730 12350780 complement(1313426..1313794) 1 NC_017361.1 COG0093 Ribosomal protein L14; 50S ribosomal protein L14 1313794 rplN 12350780 rplN Helicobacter pylori SouthAfrica7 50S ribosomal protein L14 YP_005771863.1 1313426 R 907239 CDS YP_005771864.1 385222731 12350781 complement(1313797..1314057) 1 NC_017361.1 COG0186 Ribosomal protein S17; 30S ribosomal protein S17 1314057 rpsQ 12350781 rpsQ Helicobacter pylori SouthAfrica7 30S ribosomal protein S17 YP_005771864.1 1313797 R 907239 CDS YP_005771865.1 385222732 12350782 complement(1314071..1314271) 1 NC_017361.1 COG0255 Ribosomal protein L29; 50S ribosomal protein L29 1314271 12350782 HPSA_06450 Helicobacter pylori SouthAfrica7 50S ribosomal protein L29 YP_005771865.1 1314071 R 907239 CDS YP_005771866.1 385222733 12350783 complement(1314258..1314683) 1 NC_017361.1 COG0197 Ribosomal protein L16/L10E; 50S ribosomal protein L16 1314683 rplP 12350783 rplP Helicobacter pylori SouthAfrica7 50S ribosomal protein L16 YP_005771866.1 1314258 R 907239 CDS YP_005771867.1 385222734 12350784 complement(1314686..1315390) 1 NC_017361.1 COG0092 Ribosomal protein S3; 30S ribosomal protein S3 1315390 rpsC 12350784 rpsC Helicobacter pylori SouthAfrica7 30S ribosomal protein S3 YP_005771867.1 1314686 R 907239 CDS YP_005771868.1 385222735 12350785 complement(1315394..1315762) 1 NC_017361.1 COG0091 Ribosomal protein L22; 50S ribosomal protein L22 1315762 rplV 12350785 rplV Helicobacter pylori SouthAfrica7 50S ribosomal protein L22 YP_005771868.1 1315394 R 907239 CDS YP_005771869.1 385222736 12350786 complement(1315772..1316053) 1 NC_017361.1 COG0185 Ribosomal protein S19; 30S ribosomal protein S19 1316053 rpsS 12350786 rpsS Helicobacter pylori SouthAfrica7 30S ribosomal protein S19 YP_005771869.1 1315772 R 907239 CDS YP_005771870.1 385222737 12350787 complement(1316065..1316895) 1 NC_017361.1 COG0090 Ribosomal protein L2; 50S ribosomal protein L2 1316895 rplB 12350787 rplB Helicobacter pylori SouthAfrica7 50S ribosomal protein L2 YP_005771870.1 1316065 R 907239 CDS YP_005771871.1 385222738 12350788 complement(1316911..1317192) 1 NC_017361.1 COG0089 Ribosomal protein L23; 50S ribosomal protein L23 1317192 rplW 12350788 rplW Helicobacter pylori SouthAfrica7 50S ribosomal protein L23 YP_005771871.1 1316911 R 907239 CDS YP_005771872.1 385222739 12350789 complement(1317196..1317843) 1 NC_017361.1 COG0088 Ribosomal protein L4; 50S ribosomal protein L4 1317843 rplD 12350789 rplD Helicobacter pylori SouthAfrica7 50S ribosomal protein L4 YP_005771872.1 1317196 R 907239 CDS YP_005771873.1 385222740 12350790 complement(1317877..1318452) 1 NC_017361.1 COG0087 Ribosomal protein L3; 50S ribosomal protein L3 1318452 rplC 12350790 rplC Helicobacter pylori SouthAfrica7 50S ribosomal protein L3 YP_005771873.1 1317877 R 907239 CDS YP_005771874.1 385222741 12350791 complement(1318486..1318800) 1 NC_017361.1 COG0051 Ribosomal protein S10; 30S ribosomal protein S10 1318800 rpsJ 12350791 rpsJ Helicobacter pylori SouthAfrica7 30S ribosomal protein S10 YP_005771874.1 1318486 R 907239 CDS YP_005771875.1 385222742 12350792 1319009..1320097 1 NC_017361.1 COG1373 Predicted ATPase (AAA+ superfamily); hypothetical protein 1320097 12350792 HPSA_06500 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771875.1 1319009 D 907239 CDS YP_005771876.1 385222743 12350793 1320312..1320890 1 NC_017361.1 hypothetical protein 1320890 12350793 HPSA_06505 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771876.1 1320312 D 907239 CDS YP_005771877.1 385222744 12350794 complement(1320864..1321478) 1 NC_017361.1 COG0164 Ribonuclease HII; ribonuclease HII 1321478 rnhB 12350794 rnhB Helicobacter pylori SouthAfrica7 ribonuclease HII YP_005771877.1 1320864 R 907239 CDS YP_005771878.1 385222745 12350795 complement(1321509..1321700) 1 NC_017361.1 hypothetical protein 1321700 12350795 HPSA_06515 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771878.1 1321509 R 907239 CDS YP_005771879.1 385222746 12350796 complement(1321784..1323175) 1 NC_017361.1 COG0114 Fumarase; fumarate hydratase 1323175 fumC 12350796 fumC Helicobacter pylori SouthAfrica7 fumarate hydratase YP_005771879.1 1321784 R 907239 CDS YP_005771880.1 385222747 12350797 1323362..1323739 1 NC_017361.1 hypothetical protein 1323739 12350797 HPSA_06525 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771880.1 1323362 D 907239 CDS YP_005771881.1 385222748 12350798 1323750..1324985 1 NC_017361.1 hypothetical protein 1324985 12350798 HPSA_06530 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771881.1 1323750 D 907239 CDS YP_005771882.1 385222749 12350799 1324982..1325977 1 NC_017361.1 COG0845 Membrane-fusion protein; cation efflux system protein 1325977 12350799 HPSA_06535 Helicobacter pylori SouthAfrica7 cation efflux system protein YP_005771882.1 1324982 D 907239 CDS YP_005771883.1 385222750 12350800 1325980..1329078 1 NC_017361.1 COG3696 Putative silver efflux pump; cation efflux system protein 1329078 12350800 HPSA_06540 Helicobacter pylori SouthAfrica7 cation efflux system protein YP_005771883.1 1325980 D 907239 CDS YP_005771884.1 385222751 12350801 complement(1329124..1329465) 1 NC_017361.1 COG1687 Predicted branched-chain amino acid permeases (azaleucine resistance); hypothetical protein 1329465 12350801 HPSA_06545 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771884.1 1329124 R 907239 CDS YP_005771885.1 385222752 12350802 complement(1329459..1330145) 1 NC_017361.1 COG1296 Predicted branched-chain amino acid permease (azaleucine resistance); putative branched-chain amino acid transport protein AzlC; putative membrane protein 1330145 12350802 HPSA_06550 Helicobacter pylori SouthAfrica7 putative branched-chain amino acid transport protein AzlC; putative membrane protein YP_005771885.1 1329459 R 907239 CDS YP_005771886.1 385222753 12350803 complement(1330156..1331265) 1 NC_017361.1 COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain; chaperone protein DnaJ 1331265 12350803 HPSA_06555 Helicobacter pylori SouthAfrica7 chaperone protein DnaJ YP_005771886.1 1330156 R 907239 CDS YP_005771887.1 385222754 12350804 1331392..1332540 1 NC_017361.1 hypothetical protein 1332540 12350804 HPSA_06560 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771887.1 1331392 D 907239 CDS YP_005771888.1 385222755 12350805 complement(1332586..1333614) 1 NC_017361.1 COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain; tRNA-specific 2-thiouridylase MnmA 1333614 mnmA 12350805 mnmA Helicobacter pylori SouthAfrica7 tRNA-specific 2-thiouridylase MnmA YP_005771888.1 1332586 R 907239 CDS YP_005771889.1 385222756 12350806 1333753..1334514 1 NC_017361.1 COG2214 DnaJ-class molecular chaperone; hypothetical protein 1334514 12350806 HPSA_06570 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771889.1 1333753 D 907239 CDS YP_005771890.1 385222757 12350807 complement(1334511..1335026) 1 NC_017361.1 COG1057 Nicotinic acid mononucleotide adenylyltransferase; hypothetical protein 1335026 12350807 HPSA_06575 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771890.1 1334511 R 907239 CDS YP_005771891.1 385222758 12350808 complement(1335019..1335465) 1 NC_017361.1 COG0864 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; nickel responsive regulator 1335465 12350808 HPSA_06580 Helicobacter pylori SouthAfrica7 nickel responsive regulator YP_005771891.1 1335019 R 907239 CDS YP_005771892.1 385222759 12350809 1335800..1336237 1 NC_017361.1 COG0811 Biopolymer transport proteins; biopolymer transport protein 1336237 12350809 HPSA_06585 Helicobacter pylori SouthAfrica7 biopolymer transport protein YP_005771892.1 1335800 D 907239 CDS YP_005771893.1 385222760 12350810 1336234..1336623 1 NC_017361.1 COG0848 Biopolymer transport protein; biopolymer transport protein exbD 1336623 12350810 HPSA_06590 Helicobacter pylori SouthAfrica7 biopolymer transport protein exbD YP_005771893.1 1336234 D 907239 CDS YP_005771894.1 385222761 12350811 1336589..1337425 1 NC_017361.1 COG0810 Periplasmic protein TonB, links inner and outer membranes; siderophore-mediated iron transport protein 1337425 12350811 HPSA_06595 Helicobacter pylori SouthAfrica7 siderophore-mediated iron transport protein YP_005771894.1 1336589 D 907239 CDS YP_005771895.1 385222762 12350812 1337601..1339688 1 NC_017361.1 hypothetical protein 1339688 12350812 HPSA_06600 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771895.1 1337601 D 907239 CDS YP_005771896.1 385222763 12350813 complement(1340282..1341271) 1 NC_017361.1 COG3392 Adenine-specific DNA methylase; adenine-specific methyltransferase 1341271 12350813 HPSA_06605 Helicobacter pylori SouthAfrica7 adenine-specific methyltransferase YP_005771896.1 1340282 R 907239 CDS YP_005771897.1 385222764 12350814 complement(1341280..1341966) 1 NC_017361.1 ulcer-associated protein restriction endonuclease (iceA) 1341966 12350814 HPSA_06610 Helicobacter pylori SouthAfrica7 ulcer-associated protein restriction endonuclease (iceA) YP_005771897.1 1341280 R 907239 CDS YP_005771898.1 385222765 12350815 complement(1342049..1342597) 1 NC_017361.1 COG1045 Serine acetyltransferase; serine acetyltransferase 1342597 12350815 HPSA_06615 Helicobacter pylori SouthAfrica7 serine acetyltransferase YP_005771898.1 1342049 R 907239 CDS YP_005771899.1 385222766 12350816 complement(1342594..1342758) 1 NC_017361.1 hypothetical protein 1342758 12350816 HPSA_06620 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771899.1 1342594 R 907239 CDS YP_005771900.1 385222767 12350817 complement(1343001..1343186) 1 NC_017361.1 hypothetical protein 1343186 12350817 HPSA_06625 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771900.1 1343001 R 907239 CDS YP_005771901.1 385222768 12350820 complement(1347604..1347819) 1 NC_017361.1 hypothetical protein 1347819 12350820 HPSA_06630 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771901.1 1347604 R 907239 CDS YP_005771902.1 385222769 12350821 complement(1348037..1348483) 1 NC_017361.1 COG0780 Enzyme related to GTP cyclohydrolase I; 7-cyano-7-deazaguanine reductase 1348483 12350821 HPSA_06635 Helicobacter pylori SouthAfrica7 7-cyano-7-deazaguanine reductase YP_005771902.1 1348037 R 907239 CDS YP_005771903.1 385222770 12350822 1348542..1348883 1 NC_017361.1 COG0799 Uncharacterized homolog of plant Iojap protein; iojap-like protein 1348883 12350822 HPSA_06640 Helicobacter pylori SouthAfrica7 iojap-like protein YP_005771903.1 1348542 D 907239 CDS YP_005771904.1 385222771 12350823 1348975..1349790 1 NC_017361.1 COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase; tRNA delta(2)-isopentenylpyrophosphate transferase 1349790 miaA 12350823 miaA Helicobacter pylori SouthAfrica7 tRNA delta(2)-isopentenylpyrophosphate transferase YP_005771904.1 1348975 D 907239 CDS YP_005771905.1 385222772 12350824 complement(1352766..1353545) 1 NC_017361.1 COG0812 UDP-N-acetylmuramate dehydrogenase; UDP-N-acetylenolpyruvoylglucosamine reductase 1353545 murB 12350824 murB Helicobacter pylori SouthAfrica7 UDP-N-acetylenolpyruvoylglucosamine reductase YP_005771905.1 1352766 R 907239 CDS YP_005771906.1 385222773 12350825 complement(1353549..1353815) 1 NC_017361.1 COG1987 Flagellar biosynthesis pathway, component FliQ; flagellar biosynthesis protein FliQ 1353815 fliQ 12350825 fliQ Helicobacter pylori SouthAfrica7 flagellar biosynthesis protein FliQ YP_005771906.1 1353549 R 907239 CDS YP_005771907.1 385222774 12350826 complement(1353826..1355130) 1 NC_017361.1 COG1157 Flagellar biosynthesis/type III secretory pathway ATPase; flagellum-specific ATP synthase 1355130 fliI 12350826 fliI Helicobacter pylori SouthAfrica7 flagellum-specific ATP synthase YP_005771907.1 1353826 R 907239 CDS YP_005771908.1 385222775 12350828 complement(1355131..1356045) 1 NC_017361.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase 1356045 12350828 HPSA_06685 Helicobacter pylori SouthAfrica7 type IV secretion system ATPase YP_005771908.1 1355131 R 907239 CDS YP_005771909.1 385222776 12350830 complement(1358870..1359127) 1 NC_017361.1 COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); hypothetical protein 1359127 12350830 HPSA_06700 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771909.1 1358870 R 907239 CDS YP_005771910.1 385222777 12350831 1359229..1359849 1 NC_017361.1 hypothetical protein 1359849 12350831 HPSA_06705 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771910.1 1359229 D 907239 CDS YP_005771911.1 385222778 12350832 1359929..1360021 1 NC_017361.1 hypothetical protein 1360021 12350832 HPSA_06710 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771911.1 1359929 D 907239 CDS YP_005771912.1 385222779 12350833 complement(1360009..1360839) 1 NC_017361.1 hypothetical protein 1360839 12350833 HPSA_06715 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771912.1 1360009 R 907239 CDS YP_005771913.1 385222780 12350834 complement(1361105..1361332) 1 NC_017361.1 hypothetical protein 1361332 12350834 HPSA_06720 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771913.1 1361105 R 907239 CDS YP_005771914.1 385222781 12350835 complement(1361494..1362567) 1 NC_017361.1 COG0820 Predicted Fe-S-cluster redox enzyme; ribosomal RNA large subunit methyltransferase N 1362567 12350835 HPSA_06725 Helicobacter pylori SouthAfrica7 ribosomal RNA large subunit methyltransferase N YP_005771914.1 1361494 R 907239 CDS YP_005771915.1 385222782 12350836 complement(1362564..1363553) 1 NC_017361.1 COG0794 Predicted sugar phosphate isomerase involved in capsule formation; hypothetical protein 1363553 12350836 HPSA_06730 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771915.1 1362564 R 907239 CDS YP_005771916.1 385222783 12350837 complement(1363537..1365615) 1 NC_017361.1 COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain; ribonuclease J 1365615 12350837 HPSA_06735 Helicobacter pylori SouthAfrica7 ribonuclease J YP_005771916.1 1363537 R 907239 CDS YP_005771917.1 385222784 12350838 complement(1365652..1366467) 1 NC_017361.1 COG0030 Dimethyladenosine transferase (rRNA methylation); dimethyladenosine transferase 1366467 ksgA 12350838 ksgA Helicobacter pylori SouthAfrica7 dimethyladenosine transferase YP_005771917.1 1365652 R 907239 CDS YP_005771918.1 385222785 12350839 1366527..1366664 1 NC_017361.1 hypothetical protein 1366664 12350839 HPSA_06745 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771918.1 1366527 D 907239 CDS YP_005771919.1 385222786 12350840 1366727..1366975 1 NC_017361.1 hypothetical protein 1366975 12350840 HPSA_06750 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771919.1 1366727 D 907239 CDS YP_005771920.1 385222787 12350841 complement(1369992..1370873) 1 NC_017361.1 COG0788 Formyltetrahydrofolate hydrolase; formyltetrahydrofolate hydrolase 1370873 12350841 HPSA_06765 Helicobacter pylori SouthAfrica7 formyltetrahydrofolate hydrolase YP_005771920.1 1369992 R 907239 CDS YP_005771921.1 385222788 12350842 complement(1370876..1371754) 1 NC_017361.1 COG0616 Periplasmic serine proteases (ClpP class); Signal peptide protease IV (Protease IV) (Endopeptidase IV) 1371754 12350842 HPSA_06770 Helicobacter pylori SouthAfrica7 Signal peptide protease IV (Protease IV) (Endopeptidase IV) YP_005771921.1 1370876 R 907239 CDS YP_005771922.1 385222789 12350843 1371825..1372064 1 NC_017361.1 hypothetical protein 1372064 12350843 HPSA_06775 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771922.1 1371825 D 907239 CDS YP_005771923.1 385222790 12350844 1372273..1372965 1 NC_017361.1 hypothetical protein 1372965 12350844 HPSA_06780 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771923.1 1372273 D 907239 CDS YP_005771924.1 385222791 12350845 1374073..1374501 1 NC_017361.1 hypothetical protein 1374501 12350845 HPSA_06795 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771924.1 1374073 D 907239 CDS YP_005771925.1 385222792 12350847 complement(1377553..1378332) 1 NC_017361.1 hypothetical protein 1378332 12350847 HPSA_06800 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771925.1 1377553 R 907239 CDS YP_005771926.1 385222793 12350848 1378467..1378955 1 NC_017361.1 COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family; peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) 1378955 12350848 HPSA_06805 Helicobacter pylori SouthAfrica7 peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi) YP_005771926.1 1378467 D 907239 CDS YP_005771927.1 385222794 12350849 1378969..1379199 1 NC_017361.1 COG1551 Carbon storage regulator (could also regulate swarming and quorum sensing); carbon storage regulator 1379199 12350849 HPSA_06810 Helicobacter pylori SouthAfrica7 carbon storage regulator YP_005771927.1 1378969 D 907239 CDS YP_005771928.1 385222795 12350850 1379196..1380002 1 NC_017361.1 COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1380002 12350850 HPSA_06815 Helicobacter pylori SouthAfrica7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_005771928.1 1379196 D 907239 CDS YP_005771929.1 385222796 12350851 1379999..1380457 1 NC_017361.1 COG0691 tmRNA-binding protein; SsrA-binding protein 1380457 smpB 12350851 smpB Helicobacter pylori SouthAfrica7 SsrA-binding protein YP_005771929.1 1379999 D 907239 CDS YP_005771930.1 385222797 12350852 1380460..1380912 1 NC_017361.1 COG0811 Biopolymer transport proteins; biopolymer transport protein 1380912 12350852 HPSA_06825 Helicobacter pylori SouthAfrica7 biopolymer transport protein YP_005771930.1 1380460 D 907239 CDS YP_005771931.1 385222798 12350853 1380923..1381324 1 NC_017361.1 COG0848 Biopolymer transport protein; biopolymer transport protein 1381324 12350853 HPSA_06830 Helicobacter pylori SouthAfrica7 biopolymer transport protein YP_005771931.1 1380923 D 907239 CDS YP_005771932.1 385222799 12350854 1381396..1381530 1 NC_017361.1 COG0230 Ribosomal protein L34; 50S ribosomal protein L34 1381530 rpmH 12350854 rpmH Helicobacter pylori SouthAfrica7 50S ribosomal protein L34 YP_005771932.1 1381396 D 907239 CDS YP_005771933.1 385222800 12350856 1381490..1381975 1 NC_017361.1 COG0594 RNase P protein component; ribonuclease P protein component 1381975 12350856 HPSA_06840 Helicobacter pylori SouthAfrica7 ribonuclease P protein component YP_005771933.1 1381490 D 907239 CDS YP_005771934.1 385222801 12350857 1381962..1382303 1 NC_017361.1 COG0759 Uncharacterized conserved protein; hypothetical protein 1382303 12350857 HPSA_06845 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771934.1 1381962 D 907239 CDS YP_005771935.1 385222802 12350858 1382309..1383955 1 NC_017361.1 COG0706 Preprotein translocase subunit YidC; putative inner membrane protein translocase component YidC 1383955 12350858 HPSA_06850 Helicobacter pylori SouthAfrica7 putative inner membrane protein translocase component YidC YP_005771935.1 1382309 D 907239 CDS YP_005771936.1 385222803 12350859 1384723..1386075 1 NC_017361.1 COG0486 Predicted GTPase; tRNA modification GTPase TrmE 1386075 trmE 12350859 trmE Helicobacter pylori SouthAfrica7 tRNA modification GTPase TrmE YP_005771936.1 1384723 D 907239 CDS YP_005771937.1 385222804 12350860 1386281..1388521 1 NC_017361.1 Outer membrane protein HomD; putative signal peptide 1388521 12350860 HPSA_06870 Helicobacter pylori SouthAfrica7 Outer membrane protein HomD; putative signal peptide YP_005771937.1 1386281 D 907239 CDS YP_005771938.1 385222805 12350861 1388813..1390891 1 NC_017361.1 hypothetical protein 1390891 12350861 HPSA_06875 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771938.1 1388813 D 907239 CDS YP_005771939.1 385222806 12350862 complement(1390905..1391000) 1 NC_017361.1 hypothetical protein 1391000 12350862 HPSA_06880 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771939.1 1390905 R 907239 CDS YP_005771940.1 385222807 12350863 complement(1391234..1391458) 1 NC_017361.1 putative endonuclease 1391458 12350863 HPSA_06885 Helicobacter pylori SouthAfrica7 putative endonuclease YP_005771940.1 1391234 R 907239 CDS YP_005771941.1 385222808 12350864 complement(1391733..1392644) 1 NC_017361.1 hypothetical protein 1392644 12350864 HPSA_06890 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771941.1 1391733 R 907239 CDS YP_005771942.1 385222809 12350865 complement(1392654..1392995) 1 NC_017361.1 hypothetical protein 1392995 12350865 HPSA_06895 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771942.1 1392654 R 907239 CDS YP_005771943.1 385222810 12350866 complement(1393003..1393530) 1 NC_017361.1 membrane-associated lipoprotein 1393530 12350866 HPSA_06900 Helicobacter pylori SouthAfrica7 membrane-associated lipoprotein YP_005771943.1 1393003 R 907239 CDS YP_005771944.1 385222811 12350867 complement(1393556..1394188) 1 NC_017361.1 hypothetical protein 1394188 12350867 HPSA_06905 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771944.1 1393556 R 907239 CDS YP_005771945.1 385222812 12350868 complement(1394615..1394929) 1 NC_017361.1 COG0526 Thiol-disulfide isomerase and thioredoxins; hypothetical protein 1394929 12350868 HPSA_06910 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771945.1 1394615 R 907239 CDS YP_005771946.1 385222813 12350869 complement(1394986..1395750) 1 NC_017361.1 COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; hypothetical protein 1395750 12350869 HPSA_06915 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771946.1 1394986 R 907239 CDS YP_005771947.1 385222814 12350870 complement(1395747..1399382) 1 NC_017361.1 COG0587 DNA polymerase III, alpha subunit; DNA polymerase III subunit alpha 1399382 dnaE 12350870 dnaE Helicobacter pylori SouthAfrica7 DNA polymerase III subunit alpha YP_005771947.1 1395747 R 907239 CDS YP_005771948.1 385222815 12350871 1399529..1400581 1 NC_017361.1 COG1858 Cytochrome c peroxidase; cytochrome c551 peroxidase 1400581 12350871 HPSA_06925 Helicobacter pylori SouthAfrica7 cytochrome c551 peroxidase YP_005771948.1 1399529 D 907239 CDS YP_005771949.1 385222816 12350872 complement(1401006..1401593) 1 NC_017361.1 COG3187 Heat shock protein; putative secreted motility protein 1401593 12350872 HPSA_06930 Helicobacter pylori SouthAfrica7 putative secreted motility protein YP_005771949.1 1401006 R 907239 CDS YP_005771950.1 385222817 12350873 complement(1401610..1402287) 1 NC_017361.1 hypothetical protein 1402287 12350873 HPSA_06935 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771950.1 1401610 R 907239 CDS YP_005771951.1 385222818 12350874 complement(1402290..1403105) 1 NC_017361.1 COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component; ABC transport system substrate binding protein 1403105 12350874 HPSA_06940 Helicobacter pylori SouthAfrica7 ABC transport system substrate binding protein YP_005771951.1 1402290 R 907239 CDS YP_005771952.1 385222819 12350875 complement(1403090..1403878) 1 NC_017361.1 COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component; ABC transporter ATP-binding protein 1403878 12350875 HPSA_06945 Helicobacter pylori SouthAfrica7 ABC transporter ATP-binding protein YP_005771952.1 1403090 R 907239 CDS YP_005771953.1 385222820 12350876 complement(1403875..1405008) 1 NC_017361.1 COG0767 ABC-type transport system involved in resistance to organic solvents, permease component; putative ABC transport system permease 1405008 12350876 HPSA_06950 Helicobacter pylori SouthAfrica7 putative ABC transport system permease YP_005771953.1 1403875 R 907239 CDS YP_005771954.1 385222821 12350877 complement(1405030..1405158) 1 NC_017361.1 hypothetical protein 1405158 12350877 HPSA_06955 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771954.1 1405030 R 907239 CDS YP_005771955.1 385222822 12350878 1405142..1405837 1 NC_017361.1 outer membrane protein 1405837 12350878 HPSA_06960 Helicobacter pylori SouthAfrica7 outer membrane protein YP_005771955.1 1405142 D 907239 CDS YP_005771956.1 385222823 12350879 complement(1405927..1406949) 1 NC_017361.1 COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase; branched-chain amino acid aminotransferase 1406949 12350879 HPSA_06965 Helicobacter pylori SouthAfrica7 branched-chain amino acid aminotransferase YP_005771956.1 1405927 R 907239 CDS YP_005771957.1 385222824 12350880 complement(1407242..1408003) 1 NC_017361.1 outer membrane protein (omp31) 1408003 12350880 HPSA_06970 Helicobacter pylori SouthAfrica7 outer membrane protein (omp31) YP_005771957.1 1407242 R 907239 CDS YP_005771958.1 385222825 12350881 complement(1408118..1410619) 1 NC_017361.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 1410619 12350881 HPSA_06975 Helicobacter pylori SouthAfrica7 DNA polymerase I YP_005771958.1 1408118 R 907239 CDS YP_005771959.1 385222826 12350882 complement(1410595..1410798) 1 NC_017361.1 COG0258 5'-3' exonuclease (including N-terminal domain of PolI); DNA polymerase I 1410798 12350882 HPSA_06980 Helicobacter pylori SouthAfrica7 DNA polymerase I YP_005771959.1 1410595 R 907239 CDS YP_005771960.1 385222827 12350883 complement(1412095..1414134) 1 NC_017361.1 COG0286 Type I restriction-modification system methyltransferase subunit; type II restriction modification enzyme methyltransferase 1414134 12350883 HPSA_06995 Helicobacter pylori SouthAfrica7 type II restriction modification enzyme methyltransferase YP_005771960.1 1412095 R 907239 CDS YP_005771961.1 385222828 12350884 complement(1414166..1414741) 1 NC_017361.1 hypothetical protein 1414741 12350884 HPSA_07000 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771961.1 1414166 R 907239 CDS YP_005771962.1 385222829 12350885 complement(1414729..1415304) 1 NC_017361.1 COG0125 Thymidylate kinase; thymidylate kinase 1415304 tmk 12350885 tmk Helicobacter pylori SouthAfrica7 thymidylate kinase YP_005771962.1 1414729 R 907239 CDS YP_005771963.1 385222830 12350886 complement(1415306..1415779) 1 NC_017361.1 COG0669 Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltransferase 1415779 coaD 12350886 coaD Helicobacter pylori SouthAfrica7 phosphopantetheine adenylyltransferase YP_005771963.1 1415306 R 907239 CDS YP_005771964.1 385222831 12350887 complement(1415779..1416342) 1 NC_017361.1 COG0163 3-polyprenyl-4-hydroxybenzoate decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1416342 12350887 HPSA_07015 Helicobacter pylori SouthAfrica7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_005771964.1 1415779 R 907239 CDS YP_005771965.1 385222832 12350888 1416323..1416427 1 NC_017361.1 hypothetical protein 1416427 12350888 HPSA_07020 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771965.1 1416323 D 907239 CDS YP_005771966.1 385222833 12350889 complement(1416352..1417008) 1 NC_017361.1 COG1261 Flagellar basal body P-ring biosynthesis protein; flagellar basal body P-ring biosynthesis protein FlgA 1417008 flgA 12350889 flgA Helicobacter pylori SouthAfrica7 flagellar basal body P-ring biosynthesis protein FlgA YP_005771966.1 1416352 R 907239 CDS YP_005771967.1 385222834 12350890 complement(1417005..1419050) 1 NC_017361.1 COG0210 Superfamily I DNA and RNA helicases; DNA helicase II 1419050 12350890 HPSA_07030 Helicobacter pylori SouthAfrica7 DNA helicase II YP_005771967.1 1417005 R 907239 CDS YP_005771968.1 385222835 12350891 complement(1419050..1421599) 1 NC_017361.1 COG0457 FOG: TPR repeat; hypothetical protein 1421599 12350891 HPSA_07035 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771968.1 1419050 R 907239 CDS YP_005771969.1 385222836 12350892 complement(1421609..1422856) 1 NC_017361.1 COG0172 Seryl-tRNA synthetase; seryl-tRNA synthetase 1422856 12350892 HPSA_07040 Helicobacter pylori SouthAfrica7 seryl-tRNA synthetase YP_005771969.1 1421609 R 907239 CDS YP_005771970.1 385222837 12350893 complement(1422849..1423649) 1 NC_017361.1 COG0388 Predicted amidohydrolase; hypothetical protein 1423649 12350893 HPSA_07045 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771970.1 1422849 R 907239 CDS YP_005771971.1 385222838 12350894 complement(1423653..1423913) 1 NC_017361.1 COG1722 Exonuclease VII small subunit; exodeoxyribonuclease VII small subunit 1423913 12350894 HPSA_07050 Helicobacter pylori SouthAfrica7 exodeoxyribonuclease VII small subunit YP_005771971.1 1423653 R 907239 CDS YP_005771972.1 385222839 12350895 complement(1423925..1424662) 1 NC_017361.1 COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; ubiquinone/menaquinone biosynthesis methyltransferase 1424662 ubiE 12350895 ubiE Helicobacter pylori SouthAfrica7 ubiquinone/menaquinone biosynthesis methyltransferase YP_005771972.1 1423925 R 907239 CDS YP_005771973.1 385222840 12350896 complement(1424672..1425118) 1 NC_017361.1 COG1981 Predicted membrane protein; hypothetical protein 1425118 12350896 HPSA_07060 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771973.1 1424672 R 907239 CDS YP_005771974.1 385222841 12350897 complement(1425130..1425702) 1 NC_017361.1 COG1739 Uncharacterized conserved protein; X-Pro dipeptidase 1425702 12350897 HPSA_07065 Helicobacter pylori SouthAfrica7 X-Pro dipeptidase YP_005771974.1 1425130 R 907239 CDS YP_005771975.1 385222842 12350898 complement(1425689..1426819) 1 NC_017361.1 COG0842 ABC-type multidrug transport system, permease component; antibiotic transport system permease 1426819 12350898 HPSA_07070 Helicobacter pylori SouthAfrica7 antibiotic transport system permease YP_005771975.1 1425689 R 907239 CDS YP_005771976.1 385222843 12350899 complement(1426816..1427913) 1 NC_017361.1 COG0842 ABC-type multidrug transport system, permease component; hypothetical protein 1427913 12350899 HPSA_07075 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771976.1 1426816 R 907239 CDS YP_005771977.1 385222844 12350900 complement(1427923..1428912) 1 NC_017361.1 COG0845 Membrane-fusion protein; secreted protein 1428912 12350900 HPSA_07080 Helicobacter pylori SouthAfrica7 secreted protein YP_005771977.1 1427923 R 907239 CDS YP_005771978.1 385222845 12350901 complement(1428924..1430456) 1 NC_017361.1 COG1538 Outer membrane protein; lipase-like protein 1430456 12350901 HPSA_07085 Helicobacter pylori SouthAfrica7 lipase-like protein YP_005771978.1 1428924 R 907239 CDS YP_005771979.1 385222846 12350902 complement(1430453..1431802) 1 NC_017361.1 COG1253 Hemolysins and related proteins containing CBS domains; hypothetical protein 1431802 12350902 HPSA_07090 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771979.1 1430453 R 907239 CDS YP_005771980.1 385222847 12350903 complement(1431905..1433506) 1 NC_017361.1 COG0306 Phosphate/sulphate permeases; phosphate permease 1433506 12350903 HPSA_07095 Helicobacter pylori SouthAfrica7 phosphate permease YP_005771980.1 1431905 R 907239 CDS YP_005771981.1 385222848 12350904 1433647..1433916 1 NC_017361.1 COG0694 Thioredoxin-like proteins and domains; putative nifU-like protein 1433916 12350904 HPSA_07100 Helicobacter pylori SouthAfrica7 putative nifU-like protein YP_005771981.1 1433647 D 907239 CDS YP_005771982.1 385222849 12350905 1433929..1434540 1 NC_017361.1 hypothetical protein 1434540 12350905 HPSA_07105 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771982.1 1433929 D 907239 CDS YP_005771983.1 385222850 12350906 1434543..1435886 1 NC_017361.1 COG0769 UDP-N-acetylmuramyl tripeptide synthase; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1435886 murE 12350906 murE Helicobacter pylori SouthAfrica7 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_005771983.1 1434543 D 907239 CDS YP_005771984.1 385222851 12350907 1435889..1436839 1 NC_017361.1 COG0176 Transaldolase; transaldolase 1436839 12350907 HPSA_07115 Helicobacter pylori SouthAfrica7 transaldolase YP_005771984.1 1435889 D 907239 CDS YP_005771985.1 385222852 12350908 1436894..1437430 1 NC_017361.1 COG1825 Ribosomal protein L25 (general stress protein Ctc); 50S ribosomal protein L25/general stress protein Ctc 1437430 12350908 HPSA_07120 Helicobacter pylori SouthAfrica7 50S ribosomal protein L25/general stress protein Ctc YP_005771985.1 1436894 D 907239 CDS YP_005771986.1 385222853 12350909 1437440..1438000 1 NC_017361.1 COG0193 Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1438000 12350909 HPSA_07125 Helicobacter pylori SouthAfrica7 peptidyl-tRNA hydrolase YP_005771986.1 1437440 D 907239 CDS YP_005771987.1 385222854 12350910 1438010..1439077 1 NC_017361.1 COG0795 Predicted permeases; putative permease; putative membrane protein 1439077 12350910 HPSA_07130 Helicobacter pylori SouthAfrica7 putative permease; putative membrane protein YP_005771987.1 1438010 D 907239 CDS YP_005771988.1 385222855 12350911 1439215..1440129 1 NC_017361.1 COG3886 Predicted HKD family nuclease; hypothetical protein 1440129 12350911 HPSA_07135 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771988.1 1439215 D 907239 CDS YP_005771989.1 385222856 12350912 complement(1441660..1442898) 1 NC_017361.1 outer membrane protein (omp32) 1442898 12350912 HPSA_07150 Helicobacter pylori SouthAfrica7 outer membrane protein (omp32) YP_005771989.1 1441660 R 907239 CDS YP_005771990.1 385222857 12350913 1443005..1443442 1 NC_017361.1 COG3399 Uncharacterized protein conserved in bacteria; hypothetical protein 1443442 12350913 HPSA_07155 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771990.1 1443005 D 907239 CDS YP_005771991.1 385222858 12350914 complement(1443439..1445778) 1 NC_017361.1 COG2217 Cation transport ATPase; cation transporter E1-E2 family ATPase 1445778 12350914 HPSA_07160 Helicobacter pylori SouthAfrica7 cation transporter E1-E2 family ATPase YP_005771991.1 1443439 R 907239 CDS YP_005771992.1 385222859 12350915 complement(1445788..1446504) 1 NC_017361.1 COG4123 Predicted O-methyltransferase; hypothetical protein 1446504 12350915 HPSA_07165 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771992.1 1445788 R 907239 CDS YP_005771993.1 385222860 12350916 complement(1446486..1447520) 1 NC_017361.1 COG0117 Pyrimidine deaminase; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 1447520 12350916 HPSA_07170 Helicobacter pylori SouthAfrica7 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_005771993.1 1446486 R 907239 CDS YP_005771994.1 385222861 12350917 complement(1447517..1448743) 1 NC_017361.1 COG0786 Na+/glutamate symporter; glutamate permease 1448743 12350917 HPSA_07175 Helicobacter pylori SouthAfrica7 glutamate permease YP_005771994.1 1447517 R 907239 CDS YP_005771995.1 385222862 12350918 1448829..1450028 1 NC_017361.1 COG1748 Saccharopine dehydrogenase and related proteins; hypothetical protein 1450028 12350918 HPSA_07180 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771995.1 1448829 D 907239 CDS YP_005771996.1 385222863 12350919 complement(1450038..1451408) 1 NC_017361.1 COG0348 Polyferredoxin; ferredoxin-like protein 1451408 12350919 HPSA_07185 Helicobacter pylori SouthAfrica7 ferredoxin-like protein YP_005771996.1 1450038 R 907239 CDS YP_005771997.1 385222864 12350920 1451514..1452176 1 NC_017361.1 COG0344 Predicted membrane protein; putative glycerol-3-phosphate acyltransferase PlsY 1452176 12350920 HPSA_07190 Helicobacter pylori SouthAfrica7 putative glycerol-3-phosphate acyltransferase PlsY YP_005771997.1 1451514 D 907239 CDS YP_005771998.1 385222865 12350921 1452173..1452526 1 NC_017361.1 COG1539 Dihydroneopterin aldolase; dihydroneopterin aldolase 1452526 12350921 HPSA_07195 Helicobacter pylori SouthAfrica7 dihydroneopterin aldolase YP_005771998.1 1452173 D 907239 CDS YP_005771999.1 385222866 12350922 1452510..1452836 1 NC_017361.1 hypothetical protein 1452836 12350922 HPSA_07200 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005771999.1 1452510 D 907239 CDS YP_005772000.1 385222867 12350923 1452989..1455625 1 NC_017361.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron-regulated outer membrane protein 1455625 12350923 HPSA_07205 Helicobacter pylori SouthAfrica7 iron-regulated outer membrane protein YP_005772000.1 1452989 D 907239 CDS YP_005772001.1 385222868 12350924 1455839..1457017 1 NC_017361.1 COG1921 Selenocysteine synthase [seryl-tRNASer selenium transferase]; selenocysteine synthase 1457017 12350924 HPSA_07210 Helicobacter pylori SouthAfrica7 selenocysteine synthase YP_005772001.1 1455839 D 907239 CDS YP_005772002.1 385222869 12350925 1457109..1458296 1 NC_017361.1 COG0195 Transcription elongation factor; transcription elongation factor NusA 1458296 nusA 12350925 nusA Helicobacter pylori SouthAfrica7 transcription elongation factor NusA YP_005772002.1 1457109 D 907239 CDS YP_005772003.1 385222870 12350926 1458351..1458818 1 NC_017361.1 hypothetical protein 1458818 12350926 HPSA_07220 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772003.1 1458351 D 907239 CDS YP_005772004.1 385222871 12350927 1458939..1459034 1 NC_017361.1 hypothetical protein 1459034 12350927 HPSA_07225 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772004.1 1458939 D 907239 CDS YP_005772005.1 385222872 12350928 1459364..1459462 1 NC_017361.1 hypothetical protein 1459462 12350928 HPSA_07230 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772005.1 1459364 D 907239 CDS YP_005772006.1 385222873 12350929 complement(1459808..1459954) 1 NC_017361.1 COG1002 Type II restriction enzyme, methylase subunits; type IIS restriction enzyme R and M protein 1459954 12350929 HPSA_07235 Helicobacter pylori SouthAfrica7 type IIS restriction enzyme R and M protein YP_005772006.1 1459808 R 907239 CDS YP_005772007.1 385222874 12350930 complement(1459962..1463558) 1 NC_017361.1 COG1002 Type II restriction enzyme, methylase subunits; putative type IIS restriction-modification protein 1463558 12350930 HPSA_07240 Helicobacter pylori SouthAfrica7 putative type IIS restriction-modification protein YP_005772007.1 1459962 R 907239 CDS YP_005772008.1 385222875 12350931 complement(1463560..1463847) 1 NC_017361.1 hypothetical protein 1463847 12350931 HPSA_07245 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772008.1 1463560 R 907239 CDS YP_005772009.1 385222876 12350932 complement(1466956..1467546) 1 NC_017361.1 COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system methylation subunit protein 2 1467546 12350932 HPSA_07260 Helicobacter pylori SouthAfrica7 type III restriction-modification system methylation subunit protein 2 YP_005772009.1 1466956 R 907239 CDS YP_005772010.1 385222877 12350933 complement(1467543..1468856) 1 NC_017361.1 COG2189 Adenine specific DNA methylase Mod; type III DNA modification enzyme (methyltransferase) 1468856 12350933 HPSA_07265 Helicobacter pylori SouthAfrica7 type III DNA modification enzyme (methyltransferase) YP_005772010.1 1467543 R 907239 CDS YP_005772011.1 385222878 12350934 complement(1468907..1470772) 1 NC_017361.1 COG1200 RecG-like helicase; ATP-dependent DNA helicase RecG 1470772 12350934 HPSA_07270 Helicobacter pylori SouthAfrica7 ATP-dependent DNA helicase RecG YP_005772011.1 1468907 R 907239 CDS YP_005772012.1 385222879 12350935 1470854..1471201 1 NC_017361.1 hypothetical protein 1471201 12350935 HPSA_07275 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772012.1 1470854 D 907239 CDS YP_005772013.1 385222880 12350936 1471205..1471840 1 NC_017361.1 putative outer membrane protein 1471840 12350936 HPSA_07280 Helicobacter pylori SouthAfrica7 putative outer membrane protein YP_005772013.1 1471205 D 907239 CDS YP_005772014.1 385222881 12350937 complement(1471837..1472589) 1 NC_017361.1 COG0708 Exonuclease III; exodeoxyribonuclease III 1472589 12350937 HPSA_07285 Helicobacter pylori SouthAfrica7 exodeoxyribonuclease III YP_005772014.1 1471837 R 907239 CDS YP_005772015.1 385222882 12350939 complement(1472768..1474210) 1 NC_017361.1 hypothetical protein 1474210 12350939 HPSA_07295 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772015.1 1472768 R 907239 CDS YP_005772016.1 385222883 12350940 complement(1474440..1475807) 1 NC_017361.1 COG0593 ATPase involved in DNA replication initiation; chromosomal replication initiation protein 1475807 dnaA 12350940 dnaA Helicobacter pylori SouthAfrica7 chromosomal replication initiation protein YP_005772016.1 1474440 R 907239 CDS YP_005772017.1 385222884 12350941 1475961..1476503 1 NC_017361.1 COG0813 Purine-nucleoside phosphorylase; purine nucleoside phosphorylase 1476503 12350941 HPSA_07305 Helicobacter pylori SouthAfrica7 purine nucleoside phosphorylase YP_005772017.1 1475961 D 907239 CDS YP_005772018.1 385222885 12350942 1476538..1476777 1 NC_017361.1 hypothetical protein 1476777 12350942 HPSA_07310 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772018.1 1476538 D 907239 CDS YP_005772019.1 385222886 12350943 1476778..1478571 1 NC_017361.1 COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains; glucosamine--fructose-6-phosphate aminotransferase 1478571 12350943 HPSA_07315 Helicobacter pylori SouthAfrica7 glucosamine--fructose-6-phosphate aminotransferase YP_005772019.1 1476778 D 907239 CDS YP_005772020.1 385222887 12350944 1478597..1479223 1 NC_017361.1 COG1351 Predicted alternative thymidylate synthase; FAD-dependent thymidylate synthase 1479223 thyX 12350944 thyX Helicobacter pylori SouthAfrica7 FAD-dependent thymidylate synthase YP_005772020.1 1478597 D 907239 CDS YP_005772021.1 385222888 12350945 1479693..1479785 1 NC_017361.1 hypothetical protein 1479785 12350945 HPSA_07325 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772021.1 1479693 D 907239 CDS YP_005772022.1 385222889 12350946 complement(1479818..1481011) 1 NC_017361.1 COG0732 Restriction endonuclease S subunits; restriction modification system DNA specificity domain-containing protein 1481011 12350946 HPSA_07330 Helicobacter pylori SouthAfrica7 restriction modification system DNA specificity domain-containing protein YP_005772022.1 1479818 R 907239 CDS YP_005772023.1 385222890 12350947 complement(1480999..1481775) 1 NC_017361.1 hypothetical protein 1481775 12350947 HPSA_07335 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772023.1 1480999 R 907239 CDS YP_005772024.1 385222891 12350948 complement(1481862..1484315) 1 NC_017361.1 COG0286 Type I restriction-modification system methyltransferase subunit; type I restriction enzyme M protein (hsdM) 1484315 12350948 HPSA_07340 Helicobacter pylori SouthAfrica7 type I restriction enzyme M protein (hsdM) YP_005772024.1 1481862 R 907239 CDS YP_005772025.1 385222892 12350949 1484386..1487361 1 NC_017361.1 COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases; typeI restriction enzyme R protein 1487361 12350949 HPSA_07345 Helicobacter pylori SouthAfrica7 typeI restriction enzyme R protein YP_005772025.1 1484386 D 907239 CDS YP_005772026.1 385222893 12350950 1487362..1488069 1 NC_017361.1 COG1451 Predicted metal-dependent hydrolase; hypothetical protein 1488069 12350950 HPSA_07350 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772026.1 1487362 D 907239 CDS YP_005772027.1 385222894 12350951 complement(1488541..1488708) 1 NC_017361.1 hypothetical protein 1488708 12350951 HPSA_07355 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772027.1 1488541 R 907239 CDS YP_005772028.1 385222895 12350952 complement(1488840..1488977) 1 NC_017361.1 hypothetical protein 1488977 12350952 HPSA_07360 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772028.1 1488840 R 907239 CDS YP_005772029.1 385222896 12350953 complement(1489152..1491677) 1 NC_017361.1 COG1629 Outer membrane receptor proteins, mostly Fe transport; iron(III) dicitrate transport protein (fecA) 1491677 12350953 HPSA_07365 Helicobacter pylori SouthAfrica7 iron(III) dicitrate transport protein (fecA) YP_005772029.1 1489152 R 907239 CDS YP_005772030.1 385222897 12350954 complement(1492018..1492986) 1 NC_017361.1 COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; arginase 1492986 12350954 HPSA_07370 Helicobacter pylori SouthAfrica7 arginase YP_005772030.1 1492018 R 907239 CDS YP_005772031.1 385222898 12350955 1493190..1494332 1 NC_017361.1 COG0686 Alanine dehydrogenase; alanine dehydrogenase 1494332 12350955 HPSA_07375 Helicobacter pylori SouthAfrica7 alanine dehydrogenase YP_005772031.1 1493190 D 907239 CDS YP_005772032.1 385222899 12350956 1494646..1495743 1 NC_017361.1 COG1064 Zn-dependent alcohol dehydrogenases; NADP-dependent alcohol dehydrogenase 1495743 12350956 HPSA_07380 Helicobacter pylori SouthAfrica7 NADP-dependent alcohol dehydrogenase YP_005772032.1 1494646 D 907239 CDS YP_005772033.1 385222900 12350957 1496008..1497627 1 NC_017361.1 COG1479 Uncharacterized conserved protein; hypothetical protein 1497627 12350957 HPSA_07385 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772033.1 1496008 D 907239 CDS YP_005772034.1 385222901 12350958 complement(1497669..1498397) 1 NC_017361.1 putative outer membrane protein 1498397 12350958 HPSA_07390 Helicobacter pylori SouthAfrica7 putative outer membrane protein YP_005772034.1 1497669 R 907239 CDS YP_005772035.1 385222902 12350959 1498583..1499434 1 NC_017361.1 COG0061 Predicted sugar kinase; inorganic polyphosphate/ATP-NAD kinase 1499434 12350959 HPSA_07395 Helicobacter pylori SouthAfrica7 inorganic polyphosphate/ATP-NAD kinase YP_005772035.1 1498583 D 907239 CDS YP_005772036.1 385222903 12350960 1499464..1501038 1 NC_017361.1 COG0497 ATPase involved in DNA repair; DNA repair protein RecN 1501038 12350960 HPSA_07400 Helicobacter pylori SouthAfrica7 DNA repair protein RecN YP_005772036.1 1499464 D 907239 CDS YP_005772037.1 385222904 12350961 1501035..1502342 1 NC_017361.1 COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP; fibronectin/fibrinogen-binding protein 1502342 12350961 HPSA_07405 Helicobacter pylori SouthAfrica7 fibronectin/fibrinogen-binding protein YP_005772037.1 1501035 D 907239 CDS YP_005772038.1 385222905 12350962 1502362..1502658 1 NC_017361.1 hypothetical protein 1502658 12350962 HPSA_07410 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772038.1 1502362 D 907239 CDS YP_005772039.1 385222906 12350963 1502792..1503769 1 NC_017361.1 COG0790 FOG: TPR repeat, SEL1 subfamily; hypothetical protein 1503769 12350963 HPSA_07415 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772039.1 1502792 D 907239 CDS YP_005772040.1 385222907 12350964 complement(1503808..1504671) 1 NC_017361.1 COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases; DNA polymerase III subunit epsilon 1504671 12350964 HPSA_07420 Helicobacter pylori SouthAfrica7 DNA polymerase III subunit epsilon YP_005772040.1 1503808 R 907239 CDS YP_005772041.1 385222908 12350965 complement(1504649..1505302) 1 NC_017361.1 COG0036 Pentose-5-phosphate-3-epimerase; ribulose-phosphate 3-epimerase 1505302 12350965 HPSA_07425 Helicobacter pylori SouthAfrica7 ribulose-phosphate 3-epimerase YP_005772041.1 1504649 R 907239 CDS YP_005772042.1 385222909 12350966 1505374..1506255 1 NC_017361.1 COG0158 Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase 1506255 12350966 HPSA_07430 Helicobacter pylori SouthAfrica7 fructose-1,6-bisphosphatase YP_005772042.1 1505374 D 907239 CDS YP_005772043.1 385222910 12350967 1506245..1506448 1 NC_017361.1 hypothetical protein 1506448 12350967 HPSA_07435 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772043.1 1506245 D 907239 CDS YP_005772044.1 385222911 12350968 1506463..1507359 1 NC_017361.1 COG0232 dGTP triphosphohydrolase; putative type II DNA methylase protein 1507359 12350968 HPSA_07440 Helicobacter pylori SouthAfrica7 putative type II DNA methylase protein YP_005772044.1 1506463 D 907239 CDS YP_005772045.1 385222912 12350969 1507352..1508083 1 NC_017361.1 hypothetical protein 1508083 12350969 HPSA_07445 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772045.1 1507352 D 907239 CDS YP_005772046.1 385222913 12350970 complement(1508112..1508978) 1 NC_017361.1 COG1295 Predicted membrane protein; putative ribonuclease N 1508978 12350970 HPSA_07450 Helicobacter pylori SouthAfrica7 putative ribonuclease N YP_005772046.1 1508112 R 907239 CDS YP_005772047.1 385222914 12350971 complement(1508978..1509826) 1 NC_017361.1 COG0502 Biotin synthase and related enzymes; biotin synthase 1509826 12350971 HPSA_07455 Helicobacter pylori SouthAfrica7 biotin synthase YP_005772047.1 1508978 R 907239 CDS YP_005772048.1 385222915 12350972 complement(1509795..1509962) 1 NC_017361.1 hypothetical protein 1509962 12350972 HPSA_07460 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772048.1 1509795 R 907239 CDS YP_005772049.1 385222916 12350973 1510243..1512603 1 NC_017361.1 COG3421 Uncharacterized protein conserved in bacteria; putative type III restriction enzyme R protein 1512603 12350973 HPSA_07465 Helicobacter pylori SouthAfrica7 putative type III restriction enzyme R protein YP_005772049.1 1510243 D 907239 CDS YP_005772050.1 385222917 12350974 1512597..1514465 1 NC_017361.1 COG2189 Adenine specific DNA methylase Mod; putative type III restriction enzyme M protein 1514465 12350974 HPSA_07470 Helicobacter pylori SouthAfrica7 putative type III restriction enzyme M protein YP_005772050.1 1512597 D 907239 CDS YP_005772051.1 385222918 12350975 complement(1514470..1515318) 1 NC_017361.1 COG1864 DNA/RNA endonuclease G, NUC1; putative endonuclease 1515318 12350975 HPSA_07475 Helicobacter pylori SouthAfrica7 putative endonuclease YP_005772051.1 1514470 R 907239 CDS YP_005772052.1 385222919 12350976 complement(1515475..1516302) 1 NC_017361.1 COG0287 Prephenate dehydrogenase; prephenate dehydrogenase 1516302 12350976 HPSA_07480 Helicobacter pylori SouthAfrica7 prephenate dehydrogenase YP_005772052.1 1515475 R 907239 CDS YP_005772053.1 385222920 12350977 complement(1516304..1518808) 1 NC_017361.1 COG0466 ATP-dependent Lon protease, bacterial type; ATP-dependent protease La 1518808 12350977 HPSA_07485 Helicobacter pylori SouthAfrica7 ATP-dependent protease La YP_005772053.1 1516304 R 907239 CDS YP_005772054.1 385222921 12350978 complement(1518850..1519512) 1 NC_017361.1 COG4105 DNA uptake lipoprotein; competence lipoprotein ComL 1519512 12350978 HPSA_07490 Helicobacter pylori SouthAfrica7 competence lipoprotein ComL YP_005772054.1 1518850 R 907239 CDS YP_005772055.1 385222922 12350979 complement(1519569..1519715) 1 NC_017361.1 hypothetical protein 1519715 12350979 HPSA_07495 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772055.1 1519569 R 907239 CDS YP_005772056.1 385222923 12350980 1519933..1520322 1 NC_017361.1 COG1699 Uncharacterized protein conserved in bacteria; flagellar assembly protein FliW 1520322 12350980 HPSA_07500 Helicobacter pylori SouthAfrica7 flagellar assembly protein FliW YP_005772056.1 1519933 D 907239 CDS YP_005772057.1 385222924 12350981 1520498..1520977 1 NC_017361.1 COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases; (3R)-hydroxymyristoyl-ACP dehydratase 1520977 fabZ 12350981 fabZ Helicobacter pylori SouthAfrica7 (3R)-hydroxymyristoyl-ACP dehydratase YP_005772057.1 1520498 D 907239 CDS YP_005772058.1 385222925 12350982 1520980..1521792 1 NC_017361.1 COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase; UDP-N-acetylglucosamine acyltransferase 1521792 12350982 HPSA_07510 Helicobacter pylori SouthAfrica7 UDP-N-acetylglucosamine acyltransferase YP_005772058.1 1520980 D 907239 CDS YP_005772059.1 385222926 12350983 1521794..1523152 1 NC_017361.1 COG1219 ATP-dependent protease Clp, ATPase subunit; ATP-dependent protease ATP-binding subunit ClpX 1523152 clpX 12350983 clpX Helicobacter pylori SouthAfrica7 ATP-dependent protease ATP-binding subunit ClpX YP_005772059.1 1521794 D 907239 CDS YP_005772060.1 385222927 12350984 1523195..1524238 1 NC_017361.1 COG1077 Actin-like ATPase involved in cell morphogenesis; rod shape-determining protein MreB 1524238 12350984 HPSA_07520 Helicobacter pylori SouthAfrica7 rod shape-determining protein MreB YP_005772060.1 1523195 D 907239 CDS YP_005772061.1 385222928 12350985 1524242..1524994 1 NC_017361.1 COG1792 Cell shape-determining protein; rod shape-determining protein MreC 1524994 12350985 HPSA_07525 Helicobacter pylori SouthAfrica7 rod shape-determining protein MreC YP_005772061.1 1524242 D 907239 CDS YP_005772062.1 385222929 12350986 1527440..1528219 1 NC_017361.1 hypothetical protein 1528219 12350986 HPSA_07540 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772062.1 1527440 D 907239 CDS YP_005772063.1 385222930 12350987 1528239..1528532 1 NC_017361.1 hypothetical protein 1528532 12350987 HPSA_07545 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772063.1 1528239 D 907239 CDS YP_005772064.1 385222931 12350988 1528539..1530065 1 NC_017361.1 hypothetical protein 1530065 12350988 HPSA_07550 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772064.1 1528539 D 907239 CDS YP_005772065.1 385222932 12350989 1530062..1530364 1 NC_017361.1 hypothetical protein 1530364 12350989 HPSA_07555 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772065.1 1530062 D 907239 CDS YP_005772066.1 385222933 12350990 1530365..1530631 1 NC_017361.1 hypothetical protein 1530631 12350990 HPSA_07560 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772066.1 1530365 D 907239 CDS YP_005772067.1 385222934 12350991 1530624..1533047 1 NC_017361.1 COG3451 Type IV secretory pathway, VirB4 components; VirB4-like protein 1533047 12350991 HPSA_07565 Helicobacter pylori SouthAfrica7 VirB4-like protein YP_005772067.1 1530624 D 907239 CDS YP_005772068.1 385222935 12350992 1533050..1533940 1 NC_017361.1 COG0550 Topoisomerase IA; DNA topoisomerase I (topA) 1533940 12350992 HPSA_07570 Helicobacter pylori SouthAfrica7 DNA topoisomerase I (topA) YP_005772068.1 1533050 D 907239 CDS YP_005772069.1 385222936 12350993 complement(1533988..1534404) 1 NC_017361.1 COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 1534404 12350993 HPSA_07575 Helicobacter pylori SouthAfrica7 IS200 insertion sequence from SARA17 YP_005772069.1 1533988 R 907239 CDS YP_005772070.1 385222937 12350994 1534441..1535769 1 NC_017361.1 COG0675 Transposase and inactivated derivatives; IS606 transposase 1535769 12350994 HPSA_07580 Helicobacter pylori SouthAfrica7 IS606 transposase YP_005772070.1 1534441 D 907239 CDS YP_005772071.1 385222938 12350995 1535817..1537052 1 NC_017361.1 COG0550 Topoisomerase IA; DNA topoisomerase I (topA) 1537052 12350995 HPSA_07585 Helicobacter pylori SouthAfrica7 DNA topoisomerase I (topA) YP_005772071.1 1535817 D 907239 CDS YP_005772072.1 385222939 12350996 1537169..1538332 1 NC_017361.1 COG3736 Type IV secretory pathway, component VirB8; VirB8 type IV secretion protein 1538332 12350996 HPSA_07590 Helicobacter pylori SouthAfrica7 VirB8 type IV secretion protein YP_005772072.1 1537169 D 907239 CDS YP_005772073.1 385222940 12350997 1538332..1539864 1 NC_017361.1 COG3504 Type IV secretory pathway, VirB9 components; VirB9 type IV secretion protein 1539864 12350997 HPSA_07595 Helicobacter pylori SouthAfrica7 VirB9 type IV secretion protein YP_005772073.1 1538332 D 907239 CDS YP_005772074.1 385222941 12350998 1539861..1541123 1 NC_017361.1 COG2948 Type IV secretory pathway, VirB10 components; VirB10 type IV secretion protein 1541123 12350998 HPSA_07600 Helicobacter pylori SouthAfrica7 VirB10 type IV secretion protein YP_005772074.1 1539861 D 907239 CDS YP_005772075.1 385222942 12350999 1541193..1541486 1 NC_017361.1 hypothetical protein 1541486 12350999 HPSA_07605 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772075.1 1541193 D 907239 CDS YP_005772076.1 385222943 12351000 1541479..1541799 1 NC_017361.1 COG0457 FOG: TPR repeat; hypothetical protein 1541799 12351000 HPSA_07610 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772076.1 1541479 D 907239 CDS YP_005772077.1 385222944 12351001 1541802..1542104 1 NC_017361.1 COG0612 Predicted Zn-dependent peptidases; hypothetical protein 1542104 12351001 HPSA_07615 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772077.1 1541802 D 907239 CDS YP_005772078.1 385222945 12351002 1542101..1543072 1 NC_017361.1 COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis; type IV secretion system ATPase (virB11-like) protein 1543072 12351002 HPSA_07620 Helicobacter pylori SouthAfrica7 type IV secretion system ATPase (virB11-like) protein YP_005772078.1 1542101 D 907239 CDS YP_005772079.1 385222946 12351003 1543069..1543542 1 NC_017361.1 hypothetical protein 1543542 12351003 HPSA_07625 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772079.1 1543069 D 907239 CDS YP_005772080.1 385222947 12351004 1543544..1543801 1 NC_017361.1 hypothetical protein 1543801 12351004 HPSA_07630 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772080.1 1543544 D 907239 CDS YP_005772081.1 385222948 12351005 1543901..1546033 1 NC_017361.1 COG3505 Type IV secretory pathway, VirD4 components; conjugal transfer protein (traG) 1546033 12351005 HPSA_07635 Helicobacter pylori SouthAfrica7 conjugal transfer protein (traG) YP_005772081.1 1543901 D 907239 CDS YP_005772082.1 385222949 12351006 complement(1546254..1546550) 1 NC_017361.1 hypothetical protein 1546550 12351006 HPSA_07640 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772082.1 1546254 R 907239 CDS YP_005772083.1 385222950 12351007 complement(1546606..1546917) 1 NC_017361.1 hypothetical protein 1546917 12351007 HPSA_07645 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772083.1 1546606 R 907239 CDS YP_005772084.1 385222951 12351008 1546885..1548873 1 NC_017361.1 COG3843 Type IV secretory pathway, VirD2 components (relaxase); hypothetical protein 1548873 12351008 HPSA_07650 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772084.1 1546885 D 907239 CDS YP_005772085.1 385222952 12351009 complement(1548900..1549169) 1 NC_017361.1 hypothetical protein 1549169 12351009 HPSA_07655 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772085.1 1548900 R 907239 CDS YP_005772086.1 385222953 12351010 complement(1549247..1549909) 1 NC_017361.1 COG1192 ATPases involved in chromosome partitioning; PARA protein 1549909 12351010 HPSA_07660 Helicobacter pylori SouthAfrica7 PARA protein YP_005772086.1 1549247 R 907239 CDS YP_005772087.1 385222954 12351011 complement(1550176..1558584) 1 NC_017361.1 COG0827 Adenine-specific DNA methylase; hypothetical protein 1558584 12351011 HPSA_07665 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772087.1 1550176 R 907239 CDS YP_005772088.1 385222955 12351012 1558781..1559788 1 NC_017361.1 hypothetical protein 1559788 12351012 HPSA_07670 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772088.1 1558781 D 907239 CDS YP_005772089.1 385222956 12351013 1561161..1563356 1 NC_017361.1 hypothetical protein 1563356 12351013 HPSA_07685 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772089.1 1561161 D 907239 CDS YP_005772090.1 385222957 12351014 1563366..1564766 1 NC_017361.1 hypothetical protein 1564766 12351014 HPSA_07690 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772090.1 1563366 D 907239 CDS YP_005772091.1 385222958 12351015 1564818..1565096 1 NC_017361.1 hypothetical protein 1565096 12351015 HPSA_07695 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772091.1 1564818 D 907239 CDS YP_005772092.1 385222959 12351016 1565098..1566360 1 NC_017361.1 hypothetical protein 1566360 12351016 HPSA_07700 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772092.1 1565098 D 907239 CDS YP_005772093.1 385222960 12351017 1566433..1567116 1 NC_017361.1 hypothetical protein 1567116 12351017 HPSA_07705 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772093.1 1566433 D 907239 CDS YP_005772094.1 385222961 12351018 complement(1567195..1568187) 1 NC_017361.1 COG0582 Integrase; integrase/recombinase XercD family protein 1568187 12351018 HPSA_07710 Helicobacter pylori SouthAfrica7 integrase/recombinase XercD family protein YP_005772094.1 1567195 R 907239 CDS YP_005772095.1 385222962 12351019 complement(1568573..1569259) 1 NC_017361.1 COG1061 DNA or RNA helicases of superfamily II; putative type III restriction enzyme R protein 1569259 12351019 HPSA_07715 Helicobacter pylori SouthAfrica7 putative type III restriction enzyme R protein YP_005772095.1 1568573 R 907239 CDS YP_005772096.1 385222963 12351020 complement(1569269..1570351) 1 NC_017361.1 COG2189 Adenine specific DNA methylase Mod; modification methylase KpnI 1570351 12351020 HPSA_07720 Helicobacter pylori SouthAfrica7 modification methylase KpnI YP_005772096.1 1569269 R 907239 CDS YP_005772097.1 385222964 12351021 complement(1570323..1571738) 1 NC_017361.1 COG2189 Adenine specific DNA methylase Mod; type III restriction-modification system: methylase 1571738 12351021 HPSA_07725 Helicobacter pylori SouthAfrica7 type III restriction-modification system: methylase YP_005772097.1 1570323 R 907239 CDS YP_005772098.1 385222965 12351022 1571809..1572450 1 NC_017361.1 COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; putative transcriptional regulator 1572450 12351022 HPSA_07730 Helicobacter pylori SouthAfrica7 putative transcriptional regulator YP_005772098.1 1571809 D 907239 CDS YP_005772099.1 385222966 12351023 1572500..1573618 1 NC_017361.1 COG0642 Signal transduction histidine kinase; hypothetical protein 1573618 12351023 HPSA_07735 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772099.1 1572500 D 907239 CDS YP_005772100.1 385222967 12351024 1573621..1575015 1 NC_017361.1 COG0062 Uncharacterized conserved protein; hypothetical protein 1575015 12351024 HPSA_07740 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772100.1 1573621 D 907239 CDS YP_005772101.1 385222968 12351025 1575027..1576487 1 NC_017361.1 COG0305 Replicative DNA helicase; replicative DNA helicase 1576487 12351025 HPSA_07745 Helicobacter pylori SouthAfrica7 replicative DNA helicase YP_005772101.1 1575027 D 907239 CDS YP_005772102.1 385222969 12351026 1576484..1577797 1 NC_017361.1 COG0658 Predicted membrane metal-binding protein; DNA transfer protein ComE 1577797 12351026 HPSA_07750 Helicobacter pylori SouthAfrica7 DNA transfer protein ComE YP_005772102.1 1576484 D 907239 CDS YP_005772103.1 385222970 12351027 1577826..1578710 1 NC_017361.1 COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases; prenyltransferase 1578710 ubiA 12351027 ubiA Helicobacter pylori SouthAfrica7 prenyltransferase YP_005772103.1 1577826 D 907239 CDS YP_005772104.1 385222971 12351028 1578703..1579197 1 NC_017361.1 hypothetical protein 1579197 12351028 HPSA_07760 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772104.1 1578703 D 907239 CDS YP_005772105.1 385222972 12351029 1579210..1579716 1 NC_017361.1 hypothetical protein 1579716 12351029 HPSA_07765 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772105.1 1579210 D 907239 CDS YP_005772106.1 385222973 12351030 1579710..1580513 1 NC_017361.1 COG0688 Phosphatidylserine decarboxylase; phosphatidylserine decarboxylase 1580513 12351030 HPSA_07770 Helicobacter pylori SouthAfrica7 phosphatidylserine decarboxylase YP_005772106.1 1579710 D 907239 CDS YP_005772107.1 385222974 12351031 1580503..1581513 1 NC_017361.1 COG0379 Quinolinate synthase; quinolinate synthetase 1581513 12351031 HPSA_07775 Helicobacter pylori SouthAfrica7 quinolinate synthetase YP_005772107.1 1580503 D 907239 CDS YP_005772108.1 385222975 12351032 1581513..1582334 1 NC_017361.1 COG0157 Nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase 1582334 12351032 HPSA_07780 Helicobacter pylori SouthAfrica7 nicotinate-nucleotide pyrophosphorylase YP_005772108.1 1581513 D 907239 CDS YP_005772109.1 385222976 12351033 1582360..1584798 1 NC_017361.1 COG0286 Type I restriction-modification system methyltransferase subunit; putative adenine specific DNA methyltransferase protein 1 1584798 12351033 HPSA_07785 Helicobacter pylori SouthAfrica7 putative adenine specific DNA methyltransferase protein 1 YP_005772109.1 1582360 D 907239 CDS YP_005772110.1 385222977 12351034 1585032..1585736 1 NC_017361.1 COG4889 Predicted helicase; adenine specific DNA methyltransferase 1585736 12351034 HPSA_07790 Helicobacter pylori SouthAfrica7 adenine specific DNA methyltransferase YP_005772110.1 1585032 D 907239 CDS YP_005772111.1 385222978 12351035 1586438..1586611 1 NC_017361.1 hypothetical protein 1586611 12351035 HPSA_07805 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772111.1 1586438 D 907239 CDS YP_005772112.1 385222979 12351036 1587390..1587797 1 NC_017361.1 hypothetical protein 1587797 12351036 HPSA_07810 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772112.1 1587390 D 907239 CDS YP_005772113.1 385222980 12351037 1588018..1589397 1 NC_017361.1 COG0793 Periplasmic protease; carboxyl-terminal protease 1589397 12351037 HPSA_07815 Helicobacter pylori SouthAfrica7 carboxyl-terminal protease YP_005772113.1 1588018 D 907239 CDS YP_005772114.1 385222981 12351038 1589404..1590579 1 NC_017361.1 hypothetical protein 1590579 12351038 HPSA_07820 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772114.1 1589404 D 907239 CDS YP_005772115.1 385222982 12351039 1590566..1591279 1 NC_017361.1 COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1591279 12351039 HPSA_07825 Helicobacter pylori SouthAfrica7 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_005772115.1 1590566 D 907239 CDS YP_005772116.1 385222983 12351040 1591276..1591977 1 NC_017361.1 COG0692 Uracil DNA glycosylase; uracil-DNA glycosylase 1591977 12351040 HPSA_07830 Helicobacter pylori SouthAfrica7 uracil-DNA glycosylase YP_005772116.1 1591276 D 907239 CDS YP_005772117.1 385222984 12351041 1592063..1593055 1 NC_017361.1 COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 1593055 12351041 HPSA_07835 Helicobacter pylori SouthAfrica7 glyceraldehyde-3-phosphate dehydrogenase YP_005772117.1 1592063 D 907239 CDS YP_005772118.1 385222985 12351042 1593071..1594279 1 NC_017361.1 COG0126 3-phosphoglycerate kinase; phosphoglycerate kinase 1594279 pgk 12351042 pgk Helicobacter pylori SouthAfrica7 phosphoglycerate kinase YP_005772118.1 1593071 D 907239 CDS YP_005772119.1 385222986 12351043 1594295..1595251 1 NC_017361.1 COG0598 Mg2+ and Co2+ transporters; magnesium and cobalt transport protein 1595251 12351043 HPSA_07845 Helicobacter pylori SouthAfrica7 magnesium and cobalt transport protein YP_005772119.1 1594295 D 907239 CDS YP_005772120.1 385222987 12351044 1595258..1595986 1 NC_017361.1 COG0861 Membrane protein TerC, possibly involved in tellurium resistance; integral membrane protein 1595986 12351044 HPSA_07850 Helicobacter pylori SouthAfrica7 integral membrane protein YP_005772120.1 1595258 D 907239 CDS YP_005772121.1 385222988 12351045 1596357..1596452 1 NC_017361.1 hypothetical protein 1596452 12351045 HPSA_07855 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772121.1 1596357 D 907239 CDS YP_005772122.1 385222989 12351046 complement(1596445..1597155) 1 NC_017361.1 COG0270 Site-specific DNA methylase; site-specific DNA-methyltransferase 1597155 12351046 HPSA_07860 Helicobacter pylori SouthAfrica7 site-specific DNA-methyltransferase YP_005772122.1 1596445 R 907239 CDS YP_005772123.1 385222990 12351047 complement(1597202..1597702) 1 NC_017361.1 COG0270 Site-specific DNA methylase; site-specific DNA-methyltransferase 1597702 12351047 HPSA_07865 Helicobacter pylori SouthAfrica7 site-specific DNA-methyltransferase YP_005772123.1 1597202 R 907239 CDS YP_005772124.1 385222991 12351048 complement(1598837..1599904) 1 NC_017361.1 COG0264 Translation elongation factor Ts; elongation factor Ts 1599904 tsf 12351048 tsf Helicobacter pylori SouthAfrica7 elongation factor Ts YP_005772124.1 1598837 R 907239 CDS YP_005772125.1 385222992 12351049 complement(1599904..1600698) 1 NC_017361.1 COG0052 Ribosomal protein S2; 30S ribosomal protein S2 1600698 rpsB 12351049 rpsB Helicobacter pylori SouthAfrica7 30S ribosomal protein S2 YP_005772125.1 1599904 R 907239 CDS YP_005772126.1 385222993 12351050 1600941..1603790 1 NC_017361.1 COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); putative recombination protein RecB 1603790 12351050 HPSA_07890 Helicobacter pylori SouthAfrica7 putative recombination protein RecB YP_005772126.1 1600941 D 907239 CDS YP_005772127.1 385222994 12351051 1603815..1605131 1 NC_017361.1 COG3004 Na+/H+ antiporter; Na(+)/H(+) antiporter NhaA 1605131 12351051 HPSA_07895 Helicobacter pylori SouthAfrica7 Na(+)/H(+) antiporter NhaA YP_005772127.1 1603815 D 907239 CDS YP_005772128.1 385222995 12351052 1605179..1605472 1 NC_017361.1 COG1862 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 1605472 yajC 12351052 yajC Helicobacter pylori SouthAfrica7 preprotein translocase subunit YajC YP_005772128.1 1605179 D 907239 CDS YP_005772129.1 385222996 12351053 1605473..1607053 1 NC_017361.1 COG0342 Preprotein translocase subunit SecD; preprotein translocase subunit SecD 1607053 secD 12351053 secD Helicobacter pylori SouthAfrica7 preprotein translocase subunit SecD YP_005772129.1 1605473 D 907239 CDS YP_005772130.1 385222997 12351054 1607062..1608033 1 NC_017361.1 COG0341 Preprotein translocase subunit SecF; preprotein translocase subunit SecF 1608033 secF 12351054 secF Helicobacter pylori SouthAfrica7 preprotein translocase subunit SecF YP_005772130.1 1607062 D 907239 CDS YP_005772131.1 385222998 12351055 1608043..1608381 1 NC_017361.1 hypothetical protein 1608381 12351055 HPSA_07915 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772131.1 1608043 D 907239 CDS YP_005772132.1 385222999 12351056 1608391..1610811 1 NC_017361.1 COG0495 Leucyl-tRNA synthetase; leucyl-tRNA synthetase 1610811 leuS 12351056 leuS Helicobacter pylori SouthAfrica7 leucyl-tRNA synthetase YP_005772132.1 1608391 D 907239 CDS YP_005772133.1 385223000 12351057 1610808..1611326 1 NC_017361.1 hypothetical protein 1611326 12351057 HPSA_07925 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772133.1 1610808 D 907239 CDS YP_005772134.1 385223001 12351058 1611316..1612491 1 NC_017361.1 COG0285 Folylpolyglutamate synthase; folylpolyglutamate synthase / dihydrofolate synthase 1612491 12351058 HPSA_07930 Helicobacter pylori SouthAfrica7 folylpolyglutamate synthase / dihydrofolate synthase YP_005772134.1 1611316 D 907239 CDS YP_005772135.1 385223002 12351059 1612491..1613417 1 NC_017361.1 COG0739 Membrane proteins related to metalloendopeptidases; toxR-activated protein 1613417 12351059 HPSA_07935 Helicobacter pylori SouthAfrica7 toxR-activated protein YP_005772135.1 1612491 D 907239 CDS YP_005772136.1 385223003 12351060 1613426..1614361 1 NC_017361.1 COG0739 Membrane proteins related to metalloendopeptidases; toxR-activated protein (tagE) 1614361 12351060 HPSA_07940 Helicobacter pylori SouthAfrica7 toxR-activated protein (tagE) YP_005772136.1 1613426 D 907239 CDS YP_005772137.1 385223004 12351061 1614280..1614690 1 NC_017361.1 COG1664 Integral membrane protein CcmA involved in cell shape determination; hypothetical protein 1614690 12351061 HPSA_07945 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772137.1 1614280 D 907239 CDS YP_005772138.1 385223005 12351062 1614694..1617693 1 NC_017361.1 COG1197 Transcription-repair coupling factor (superfamily II helicase); transcription-repair coupling factor 1617693 12351062 HPSA_07950 Helicobacter pylori SouthAfrica7 transcription-repair coupling factor YP_005772138.1 1614694 D 907239 CDS YP_005772139.1 385223006 12351063 1617820..1618323 1 NC_017361.1 COG0723 Rieske Fe-S protein; ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) 1618323 12351063 HPSA_07955 Helicobacter pylori SouthAfrica7 ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (fbcF) YP_005772139.1 1617820 D 907239 CDS YP_005772140.1 385223007 12351064 1618335..1619573 1 NC_017361.1 COG1290 Cytochrome b subunit of the bc complex; ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (fbcH) 1619573 12351064 HPSA_07960 Helicobacter pylori SouthAfrica7 ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (fbcH) YP_005772140.1 1618335 D 907239 CDS YP_005772141.1 385223008 12351065 1619570..1620427 1 NC_017361.1 COG2857 Cytochrome c1; ubiquinol-cytochrome c reductase cytochrome c1 subunit 1620427 12351065 HPSA_07965 Helicobacter pylori SouthAfrica7 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_005772141.1 1619570 D 907239 CDS YP_005772142.1 385223009 12351066 1620642..1621751 1 NC_017361.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; hypothetical protein 1621751 12351066 HPSA_07970 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772142.1 1620642 D 907239 CDS YP_005772143.1 385223010 12351067 1621714..1622316 1 NC_017361.1 COG2194 Predicted membrane-associated, metal-dependent hydrolase; putative metal-dependent hydrolase protein 2 1622316 12351067 HPSA_07975 Helicobacter pylori SouthAfrica7 putative metal-dependent hydrolase protein 2 YP_005772143.1 1621714 D 907239 CDS YP_005772144.1 385223011 12351068 complement(1622324..1623007) 1 NC_017361.1 hypothetical protein 1623007 12351068 HPSA_07980 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772144.1 1622324 R 907239 CDS YP_005772145.1 385223012 12351069 complement(1623007..1624098) 1 NC_017361.1 COG1106 Predicted ATPases; hypothetical protein 1624098 12351069 HPSA_07985 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772145.1 1623007 R 907239 CDS YP_005772146.1 385223013 12351070 complement(1624185..1626032) 1 NC_017361.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; cell division protein FtsI 1626032 12351070 HPSA_07990 Helicobacter pylori SouthAfrica7 cell division protein FtsI YP_005772146.1 1624185 R 907239 CDS YP_005772147.1 385223014 12351071 complement(1626184..1626513) 1 NC_017361.1 COG1677 Flagellar hook-basal body protein; flagellar hook-basal body protein FliE 1626513 fliE 12351071 fliE Helicobacter pylori SouthAfrica7 flagellar hook-basal body protein FliE YP_005772147.1 1626184 R 907239 CDS YP_005772148.1 385223015 12351072 complement(1626641..1627126) 1 NC_017361.1 COG1558 Flagellar basal body rod protein; flagellar basal body rod protein FlgC 1627126 flgC 12351072 flgC Helicobacter pylori SouthAfrica7 flagellar basal body rod protein FlgC YP_005772148.1 1626641 R 907239 CDS YP_005772149.1 385223016 12351073 complement(1627140..1627562) 1 NC_017361.1 COG1815 Flagellar basal body protein; flagellar basal body rod protein FlgB 1627562 flgB 12351073 flgB Helicobacter pylori SouthAfrica7 flagellar basal body rod protein FlgB YP_005772149.1 1627140 R 907239 CDS YP_005772150.1 385223017 12351074 1627750..1628916 1 NC_017361.1 COG0772 Bacterial cell division membrane protein; cell division protein ftsW 1628916 12351074 HPSA_08010 Helicobacter pylori SouthAfrica7 cell division protein ftsW YP_005772150.1 1627750 D 907239 CDS YP_005772151.1 385223018 12351075 complement(1628941..1629948) 1 NC_017361.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; iron(III) ABC transporter, periplasmic iron-binding protein (ceuE) 1629948 12351075 HPSA_08015 Helicobacter pylori SouthAfrica7 iron(III) ABC transporter, periplasmic iron-binding protein (ceuE) YP_005772151.1 1628941 R 907239 CDS YP_005772152.1 385223019 12351076 complement(1630130..1631131) 1 NC_017361.1 COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component; hypothetical protein 1631131 12351076 HPSA_08020 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772152.1 1630130 R 907239 CDS YP_005772153.1 385223020 12351077 1631379..1631975 1 NC_017361.1 COG0450 Peroxiredoxin; alkyl hydroperoxide reductase 1631975 12351077 HPSA_08025 Helicobacter pylori SouthAfrica7 alkyl hydroperoxide reductase YP_005772153.1 1631379 D 907239 CDS YP_005772154.1 385223021 12351078 1632119..1632925 1 NC_017361.1 COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen; putative Outer membrane protein 1632925 12351078 HPSA_08030 Helicobacter pylori SouthAfrica7 putative Outer membrane protein YP_005772154.1 1632119 D 907239 CDS YP_005772155.1 385223022 12351079 1633104..1633205 1 NC_017361.1 hypothetical protein 1633205 12351079 HPSA_08035 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772155.1 1633104 D 907239 CDS YP_005772156.1 385223023 12351080 complement(1633582..1635348) 1 NC_017361.1 COG0768 Cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein 2 1635348 12351080 HPSA_08040 Helicobacter pylori SouthAfrica7 penicillin-binding protein 2 YP_005772156.1 1633582 R 907239 CDS YP_005772157.1 385223024 12351081 complement(1635329..1635772) 1 NC_017361.1 hypothetical protein 1635772 12351081 HPSA_08045 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772157.1 1635329 R 907239 CDS YP_005772158.1 385223025 12351082 complement(1635778..1636404) 1 NC_017361.1 COG0218 Predicted GTPase; ribosome biogenesis GTP-binding protein YsxC 1636404 engB 12351082 engB Helicobacter pylori SouthAfrica7 ribosome biogenesis GTP-binding protein YsxC YP_005772158.1 1635778 R 907239 CDS YP_005772159.1 385223026 12351083 complement(1636401..1636958) 1 NC_017361.1 COG1934 Uncharacterized protein conserved in bacteria; hypothetical protein 1636958 12351083 HPSA_08055 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772159.1 1636401 R 907239 CDS YP_005772160.1 385223027 12351084 complement(1636958..1637551) 1 NC_017361.1 hypothetical protein 1637551 12351084 HPSA_08060 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772160.1 1636958 R 907239 CDS YP_005772161.1 385223028 12351085 complement(1637526..1638020) 1 NC_017361.1 COG1778 Low specificity phosphatase (HAD superfamily); hypothetical protein 1638020 12351085 HPSA_08065 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772161.1 1637526 R 907239 CDS YP_005772162.1 385223029 12351086 complement(1638017..1638964) 1 NC_017361.1 COG0797 Lipoproteins; rare lipoprotein A 1638964 12351086 HPSA_08070 Helicobacter pylori SouthAfrica7 rare lipoprotein A YP_005772162.1 1638017 R 907239 CDS YP_005772163.1 385223030 12351087 complement(1638964..1640076) 1 NC_017361.1 COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains); membrane-bound lytic murein transglycosylase D 1640076 12351087 HPSA_08075 Helicobacter pylori SouthAfrica7 membrane-bound lytic murein transglycosylase D YP_005772163.1 1638964 R 907239 CDS YP_005772164.1 385223031 12351088 complement(1640178..1640942) 1 NC_017361.1 COG0084 Mg-dependent DNase; Deoxyribonuclease 1640942 12351088 HPSA_08080 Helicobacter pylori SouthAfrica7 Deoxyribonuclease YP_005772164.1 1640178 R 907239 CDS YP_005772165.1 385223032 12351089 1641015..1641635 1 NC_017361.1 COG0307 Riboflavin synthase alpha chain; riboflavin synthase subunit alpha 1641635 12351089 HPSA_08085 Helicobacter pylori SouthAfrica7 riboflavin synthase subunit alpha YP_005772165.1 1641015 D 907239 CDS YP_005772166.1 385223033 12351090 1641636..1641908 1 NC_017361.1 COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB; FlhB-related flagellar biosynthesis protein 1641908 12351090 HPSA_08090 Helicobacter pylori SouthAfrica7 FlhB-related flagellar biosynthesis protein YP_005772166.1 1641636 D 907239 CDS YP_005772167.1 385223034 12351091 1641923..1642906 1 NC_017361.1 COG1135 ABC-type metal ion transport system, ATPase component; DL-methionine transporter ATP-binding subunit 1642906 12351091 HPSA_08095 Helicobacter pylori SouthAfrica7 DL-methionine transporter ATP-binding subunit YP_005772167.1 1641923 D 907239 CDS YP_005772168.1 385223035 12351092 1642908..1643555 1 NC_017361.1 COG2011 ABC-type metal ion transport system, permease component; ABC transporter permease 1643555 12351092 HPSA_08100 Helicobacter pylori SouthAfrica7 ABC transporter permease YP_005772168.1 1642908 D 907239 CDS YP_005772169.1 385223036 12351093 complement(1643738..1644172) 1 NC_017361.1 hypothetical protein 1644172 12351093 HPSA_08105 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772169.1 1643738 R 907239 CDS YP_005772170.1 385223037 12351094 complement(1644182..1644778) 1 NC_017361.1 COG0671 Membrane-associated phospholipid phosphatase; hypothetical protein 1644778 12351094 HPSA_08110 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772170.1 1644182 R 907239 CDS YP_005772171.1 385223038 12351095 complement(1644775..1645785) 1 NC_017361.1 COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase; undecaprenyl phosphate N-acetylglucosaminyltransferase 1645785 12351095 HPSA_08115 Helicobacter pylori SouthAfrica7 undecaprenyl phosphate N-acetylglucosaminyltransferase YP_005772171.1 1644775 R 907239 CDS YP_005772172.1 385223039 12351096 1645919..1646707 1 NC_017361.1 COG0854 Pyridoxal phosphate biosynthesis protein; pyridoxine 5'-phosphate synthase 1646707 12351096 HPSA_08120 Helicobacter pylori SouthAfrica7 pyridoxine 5'-phosphate synthase YP_005772172.1 1645919 D 907239 CDS YP_005772173.1 385223040 12351097 1646709..1647632 1 NC_017361.1 COG1995 Pyridoxal phosphate biosynthesis protein; 4-hydroxythreonine-4-phosphate dehydrogenase 1647632 pdxA 12351097 pdxA Helicobacter pylori SouthAfrica7 4-hydroxythreonine-4-phosphate dehydrogenase YP_005772173.1 1646709 D 907239 CDS YP_005772174.1 385223041 12351098 1647793..1648821 1 NC_017361.1 COG0533 Metal-dependent proteases with possible chaperone activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1648821 12351098 HPSA_08130 Helicobacter pylori SouthAfrica7 putative DNA-binding/iron metalloprotein/AP endonuclease YP_005772174.1 1647793 D 907239 CDS YP_005772175.1 385223042 12351099 1649805..1650593 1 NC_017361.1 COG4786 Flagellar basal body rod protein; flagellar basal body rod protein FlgG 1650593 flgG 12351099 flgG Helicobacter pylori SouthAfrica7 flagellar basal body rod protein FlgG YP_005772175.1 1649805 D 907239 CDS YP_005772176.1 385223043 12351100 complement(1650616..1651602) 1 NC_017361.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 1651602 12351100 HPSA_08140 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772176.1 1650616 R 907239 CDS YP_005772177.1 385223044 12351101 complement(1652025..1652165) 1 NC_017361.1 hypothetical protein 1652165 12351101 HPSA_08145 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772177.1 1652025 R 907239 CDS YP_005772178.1 385223045 12351102 complement(1652250..1653011) 1 NC_017361.1 COG4735 Uncharacterized protein conserved in bacteria; hypothetical protein 1653011 12351102 HPSA_08150 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772178.1 1652250 R 907239 CDS YP_005772179.1 385223046 12351103 complement(1653205..1653513) 1 NC_017361.1 hypothetical protein 1653513 12351103 HPSA_08155 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772179.1 1653205 R 907239 CDS YP_005772180.1 385223047 12351104 complement(1653567..1653752) 1 NC_017361.1 hypothetical protein 1653752 12351104 HPSA_08160 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005772180.1 1653567 R 907239 CDS YP_005782946.1 385221475 12363123 91..1698 1 NC_017373.1 COG5527 Protein involved in initiation of plasmid replication; hypothetical protein 1698 12363123 HPSA_08249 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782946.1 91 D 907239 CDS YP_005782947.1 385221476 12363124 complement(1866..2282) 1 NC_017373.1 COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 2282 12363124 HPSA_08254 Helicobacter pylori SouthAfrica7 IS200 insertion sequence from SARA17 YP_005782947.1 1866 R 907239 CDS YP_005782948.1 385221477 12363125 2319..3647 1 NC_017373.1 COG0675 Transposase and inactivated derivatives; IS606 transposase 3647 12363125 HPSA_08259 Helicobacter pylori SouthAfrica7 IS606 transposase YP_005782948.1 2319 D 907239 CDS YP_005782949.1 385221478 12363126 3800..4300 1 NC_017373.1 hypothetical protein 4300 12363126 HPSA_08264 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782949.1 3800 D 907239 CDS YP_005782950.1 385221479 12363127 4300..4632 1 NC_017373.1 hypothetical protein 4632 12363127 HPSA_08269 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782950.1 4300 D 907239 CDS YP_005782951.1 385221480 12363128 4636..5409 1 NC_017373.1 COG3177 Uncharacterized conserved protein; hypothetical protein 5409 12363128 HPSA_08274 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782951.1 4636 D 907239 CDS YP_005782952.1 385221481 12363129 5455..6165 1 NC_017373.1 COG3177 Uncharacterized conserved protein; hypothetical protein 6165 12363129 HPSA_08279 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782952.1 5455 D 907239 CDS YP_005782953.1 385221482 12363130 complement(6290..7453) 1 NC_017373.1 COG0477 Permeases of the major facilitator superfamily; MccC-like protein 7453 12363130 HPSA_08284 Helicobacter pylori SouthAfrica7 MccC-like protein YP_005782953.1 6290 R 907239 CDS YP_005782954.1 385221483 12363131 complement(7652..8980) 1 NC_017373.1 COG0675 Transposase and inactivated derivatives; IS606 transposase 8980 12363131 HPSA_08289 Helicobacter pylori SouthAfrica7 IS606 transposase YP_005782954.1 7652 R 907239 CDS YP_005782955.1 385221484 12363132 9017..9433 1 NC_017373.1 COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 9433 12363132 HPSA_08294 Helicobacter pylori SouthAfrica7 IS200 insertion sequence from SARA17 YP_005782955.1 9017 D 907239 CDS YP_005782956.1 385221485 12363133 9770..9961 1 NC_017373.1 hypothetical protein 9961 12363133 HPSA_08299 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782956.1 9770 D 907239 CDS YP_005782957.1 385221486 12363105 9962..10876 1 NC_017373.1 hypothetical protein 10876 12363105 HPSA_08304 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782957.1 9962 D 907239 CDS YP_005782958.1 385221487 12363106 10876..12198 1 NC_017373.1 COG1944 Uncharacterized conserved protein; hypothetical protein 12198 12363106 HPSA_08309 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782958.1 10876 D 907239 CDS YP_005782959.1 385221488 12363107 12210..13031 1 NC_017373.1 COG0778 Nitroreductase; hypothetical protein 13031 12363107 HPSA_08314 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782959.1 12210 D 907239 CDS YP_005782960.1 385221489 12363108 13015..14157 1 NC_017373.1 hypothetical protein 14157 12363108 HPSA_08319 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782960.1 13015 D 907239 CDS YP_005782961.1 385221490 12363109 14147..14848 1 NC_017373.1 COG1131 ABC-type multidrug transport system, ATPase component; ABC transporter ATP-binding protein 14848 12363109 HPSA_08324 Helicobacter pylori SouthAfrica7 ABC transporter ATP-binding protein YP_005782961.1 14147 D 907239 CDS YP_005782962.1 385221491 12363110 14848..15603 1 NC_017373.1 COG0842 ABC-type multidrug transport system, permease component; multidrug ABC transporter permease 15603 12363110 HPSA_08329 Helicobacter pylori SouthAfrica7 multidrug ABC transporter permease YP_005782962.1 14848 D 907239 CDS YP_005782963.1 385221492 12363111 complement(15608..17023) 1 NC_017373.1 F4; hypothetical protein 17023 12363111 HPSA_08334 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782963.1 15608 R 907239 CDS YP_005782964.1 385221493 12363112 17330..18049 1 NC_017373.1 hypothetical protein 18049 12363112 HPSA_08339 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782964.1 17330 D 907239 CDS YP_005782965.1 385221494 12363113 complement(18142..19470) 1 NC_017373.1 COG0675 Transposase and inactivated derivatives; IS606 transposase 19470 12363113 HPSA_08344 Helicobacter pylori SouthAfrica7 IS606 transposase YP_005782965.1 18142 R 907239 CDS YP_005782966.1 385221495 12363114 19507..19923 1 NC_017373.1 COG1943 Transposase and inactivated derivatives; IS200 insertion sequence from SARA17 19923 12363114 HPSA_08349 Helicobacter pylori SouthAfrica7 IS200 insertion sequence from SARA17 YP_005782966.1 19507 D 907239 CDS YP_005782967.1 385221496 12363115 complement(20077..22059) 1 NC_017373.1 MobA-like protein 22059 12363115 HPSA_08354 Helicobacter pylori SouthAfrica7 MobA-like protein YP_005782967.1 20077 R 907239 CDS YP_005782968.1 385221497 12363116 complement(22049..22384) 1 NC_017373.1 F5; hypothetical protein 22384 12363116 HPSA_08359 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782968.1 22049 R 907239 CDS YP_005782969.1 385221498 12363117 22556..22837 1 NC_017373.1 hypothetical protein 22837 12363117 HPSA_08364 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782969.1 22556 D 907239 CDS YP_005782970.1 385221499 12363118 22846..23115 1 NC_017373.1 COG3041 Uncharacterized protein conserved in bacteria; hypothetical protein 23115 12363118 HPSA_08369 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782970.1 22846 D 907239 CDS YP_005782971.1 385221500 12363119 complement(23462..24043) 1 NC_017373.1 COG1432 Uncharacterized conserved protein; hypothetical protein 24043 12363119 HPSA_08374 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782971.1 23462 R 907239 CDS YP_005782972.1 385221501 12363120 24415..24603 1 NC_017373.1 hypothetical protein 24603 12363120 HPSA_08379 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782972.1 24415 D 907239 CDS YP_005782973.1 385221502 12363121 24606..25025 1 NC_017373.1 hypothetical protein 25025 12363121 HPSA_08384 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782973.1 24606 D 907239 CDS YP_005782974.1 385221503 12363122 25167..25442 1 NC_017373.1 hypothetical protein 25442 12363122 HPSA_08389 Helicobacter pylori SouthAfrica7 hypothetical protein YP_005782974.1 25167 D 907239 CDS