-- dump date 20140619_113719 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_002300641.1 210134202 7011339 complement(13..429) 1 NC_011498.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 429 nusB 7011339 nusB Helicobacter pylori P12 transcription antitermination protein NusB YP_002300641.1 13 R 570508 CDS YP_002300642.1 210134203 7010365 complement(431..901) 1 NC_011498.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 901 ribH 7010365 ribH Helicobacter pylori P12 6,7-dimethyl-8-ribityllumazine synthase YP_002300642.1 431 R 570508 CDS YP_002300643.1 210134204 7010366 complement(911..1741) 1 NC_011498.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1741 kdsA 7010366 kdsA Helicobacter pylori P12 2-dehydro-3-deoxyphosphooctonate aldolase YP_002300643.1 911 R 570508 CDS YP_002300644.1 210134205 7010367 complement(1728..2393) 1 NC_011498.1 beta-carbonic anhydrase 2393 7010367 HPP12_0004 Helicobacter pylori P12 beta-carbonic anhydrase YP_002300644.1 1728 R 570508 CDS YP_002300645.1 210134206 7010368 2515..3198 1 NC_011498.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 3198 pyrF 7010368 pyrF Helicobacter pylori P12 orotidine 5'-phosphate decarboxylase YP_002300645.1 2515 D 570508 CDS YP_002300646.1 210134207 7010369 3199..4029 1 NC_011498.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 4029 panC 7010369 panC Helicobacter pylori P12 pantoate--beta-alanine ligase YP_002300646.1 3199 D 570508 CDS YP_002300647.1 210134208 7010375 complement(5068..7167) 1 NC_011498.1 involved in adhesion; outer membrane protein HopZ 7167 hopZ 7010375 hopZ Helicobacter pylori P12 outer membrane protein HopZ YP_002300647.1 5068 R 570508 CDS YP_002300648.1 210134209 7010376 complement(7486..9126) 1 NC_011498.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 9126 groEL 7010376 groEL Helicobacter pylori P12 chaperonin GroEL YP_002300648.1 7486 R 570508 CDS YP_002300649.1 210134210 7010377 complement(9151..9507) 1 NC_011498.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 9507 groES 7010377 groES Helicobacter pylori P12 co-chaperonin GroES YP_002300649.1 9151 R 570508 CDS YP_002300650.1 210134211 7010378 9795..11474 1 NC_011498.1 synthesizes RNA primers at the replication forks; DNA primase 11474 dnaG 7010378 dnaG Helicobacter pylori P12 DNA primase YP_002300650.1 9795 D 570508 CDS YP_002300651.1 210134212 7010379 11471..12523 1 NC_011498.1 argininosuccinate synthase 12523 7010379 HPP12_0011 Helicobacter pylori P12 argininosuccinate synthase YP_002300651.1 11471 D 570508 CDS YP_002300652.1 210134213 7010380 12615..13442 1 NC_011498.1 hypothetical protein 13442 7010380 HPP12_0012 Helicobacter pylori P12 hypothetical protein YP_002300652.1 12615 D 570508 CDS YP_002300653.1 210134214 7010381 13587..13868 1 NC_011498.1 ComB2 competence protein 13868 comB2 7010381 comB2 Helicobacter pylori P12 ComB2 competence protein YP_002300653.1 13587 D 570508 CDS YP_002300654.1 210134215 7010382 13868..14131 1 NC_011498.1 ComB3 competence protein 14131 comB3 7010382 comB3 Helicobacter pylori P12 ComB3 competence protein YP_002300654.1 13868 D 570508 CDS YP_002300655.1 210134216 7010383 14133..16496 1 NC_011498.1 ComB4 competence protein 16496 comB4 7010383 comB4 Helicobacter pylori P12 ComB4 competence protein YP_002300655.1 14133 D 570508 CDS YP_002300656.1 210134217 7010384 16729..18138 1 NC_011498.1 hypothetical protein 18138 7010384 HPP12_0016 Helicobacter pylori P12 hypothetical protein YP_002300656.1 16729 D 570508 CDS YP_002300657.1 210134218 7010385 18238..19203 1 NC_011498.1 chemotaxis signal transduction protein CheV 19203 cheV-1 7010385 cheV-1 Helicobacter pylori P12 chemotaxis signal transduction protein CheV YP_002300657.1 18238 D 570508 CDS YP_002300658.1 210134219 7010386 19200..20417 1 NC_011498.1 carboxynorspermidine decarboxylase 20417 nspC 7010386 nspC Helicobacter pylori P12 carboxynorspermidine decarboxylase YP_002300658.1 19200 D 570508 CDS YP_002300659.1 210134220 7010387 complement(20436..21011) 1 NC_011498.1 inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022; lipid A 1-phosphatase 21011 7010387 HPP12_0019 Helicobacter pylori P12 lipid A 1-phosphatase YP_002300659.1 20436 R 570508 CDS YP_002300660.1 210134221 7010388 complement(21022..22587) 1 NC_011498.1 attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria; lipid A phosphoethanolamine transferase 22587 7010388 HPP12_0020 Helicobacter pylori P12 lipid A phosphoethanolamine transferase YP_002300660.1 21022 R 570508 CDS YP_002300661.1 210134222 7010389 complement(23206..25338) 1 NC_011498.1 outer membrane protein HopD 25338 hopD 7010389 hopD Helicobacter pylori P12 outer membrane protein HopD YP_002300661.1 23206 R 570508 CDS YP_002300662.1 210134223 7010390 complement(25872..27152) 1 NC_011498.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 27152 gltA 7010390 gltA Helicobacter pylori P12 type II citrate synthase YP_002300662.1 25872 R 570508 CDS YP_002300663.1 210134224 7010391 27354..28631 1 NC_011498.1 isocitrate dehydrogenase 28631 icd 7010391 icd Helicobacter pylori P12 isocitrate dehydrogenase YP_002300663.1 27354 D 570508 CDS YP_002300664.1 210134225 7010392 28693..29226 1 NC_011498.1 hypothetical protein 29226 7010392 HPP12_0024 Helicobacter pylori P12 hypothetical protein YP_002300664.1 28693 D 570508 CDS YP_002300665.1 210134226 7010393 complement(29203..29859) 1 NC_011498.1 dethiobiotin synthetase 29859 bioD 7010393 bioD Helicobacter pylori P12 dethiobiotin synthetase YP_002300665.1 29203 R 570508 CDS YP_002300666.1 210134227 7010394 complement(29863..31623) 1 NC_011498.1 hypothetical protein 31623 7010394 HPP12_0026 Helicobacter pylori P12 hypothetical protein YP_002300666.1 29863 R 570508 CDS YP_002300667.1 210134228 7010395 31734..32147 1 NC_011498.1 hypothetical protein 32147 7010395 HPP12_0027 Helicobacter pylori P12 hypothetical protein YP_002300667.1 31734 D 570508 CDS YP_002300668.1 210134229 7010396 32183..32458 1 NC_011498.1 ATP-dependent clp protease adapter protein ClpS 32458 clpS 7010396 clpS Helicobacter pylori P12 ATP-dependent clp protease adapter protein ClpS YP_002300668.1 32183 D 570508 CDS YP_002300669.1 210134230 7010397 32458..34683 1 NC_011498.1 ATP-binding subunit, chaperone protein; ATP-dependent clp protease 34683 clpA 7010397 clpA Helicobacter pylori P12 ATP-dependent clp protease YP_002300669.1 32458 D 570508 CDS YP_002300670.1 210134231 7010398 34673..35023 1 NC_011498.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 35023 panD 7010398 panD Helicobacter pylori P12 aspartate alpha-decarboxylase YP_002300670.1 34673 D 570508 CDS YP_002300671.1 210134232 7010399 35034..35327 1 NC_011498.1 hypothetical protein 35327 7010399 HPP12_0031 Helicobacter pylori P12 hypothetical protein YP_002300671.1 35034 D 570508 CDS YP_002300672.1 210134233 7010400 35327..36331 1 NC_011498.1 hypothetical protein 36331 7010400 HPP12_0032 Helicobacter pylori P12 hypothetical protein YP_002300672.1 35327 D 570508 CDS YP_002300673.1 210134234 7010401 36339..37394 1 NC_011498.1 ComB6 competence protein 37394 comB6 7010401 comB6 Helicobacter pylori P12 ComB6 competence protein YP_002300673.1 36339 D 570508 CDS YP_002300674.1 210134235 7010402 37410..37523 1 NC_011498.1 Comb7 competence protein 37523 comb7 7010402 comb7 Helicobacter pylori P12 Comb7 competence protein YP_002300674.1 37410 D 570508 CDS YP_002300675.1 210134236 7010403 37520..38263 1 NC_011498.1 ComB8 competence protein 38263 comB8 7010403 comB8 Helicobacter pylori P12 ComB8 competence protein YP_002300675.1 37520 D 570508 CDS YP_002300676.1 210134237 7010404 38263..39249 1 NC_011498.1 ComB9 competence protein 39249 comB9 7010404 comB9 Helicobacter pylori P12 ComB9 competence protein YP_002300676.1 38263 D 570508 CDS YP_002300677.1 210134238 7010405 39242..40378 1 NC_011498.1 ComB10 competence protein 40378 comB10 7010405 comB10 Helicobacter pylori P12 ComB10 competence protein YP_002300677.1 39242 D 570508 CDS YP_002300678.1 210134239 7010406 40448..41767 1 NC_011498.1 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase 41767 7010406 HPP12_0038 Helicobacter pylori P12 bifunctional mannose-6-phosphate isomerase / mannose-1-phosphate guanylyltransferase YP_002300678.1 40448 D 570508 CDS YP_002300679.1 210134240 7010407 41888..43033 1 NC_011498.1 GDP-D-mannose dehydratase 43033 gmd 7010407 gmd Helicobacter pylori P12 GDP-D-mannose dehydratase YP_002300679.1 41888 D 570508 CDS YP_002300680.1 210134241 7010408 43026..43958 1 NC_011498.1 GDP-fucose synthetase 43958 7010408 HPP12_0040 Helicobacter pylori P12 GDP-fucose synthetase YP_002300680.1 43026 D 570508 CDS YP_002300681.1 210134242 7010409 complement(44876..45874) 1 NC_011498.1 hydrogenase expression/formation protein 45874 hypE 7010409 hypE Helicobacter pylori P12 hydrogenase expression/formation protein YP_002300681.1 44876 R 570508 CDS YP_002300682.1 210134243 7010410 complement(45877..48150) 1 NC_011498.1 transcriptional regulatory protein HypF 48150 hypF 7010410 hypF Helicobacter pylori P12 transcriptional regulatory protein HypF YP_002300682.1 45877 R 570508 CDS YP_002300683.1 210134244 7010411 complement(48126..49118) 1 NC_011498.1 peptidylarginine deiminase domain-containing protein 49118 7010411 HPP12_0043 Helicobacter pylori P12 peptidylarginine deiminase domain-containing protein YP_002300683.1 48126 R 570508 CDS YP_002300684.1 210134245 7010412 complement(49177..49869) 1 NC_011498.1 adenine specific DNA methyltransferase 49869 dpnA 7010412 dpnA Helicobacter pylori P12 adenine specific DNA methyltransferase YP_002300684.1 49177 R 570508 CDS YP_002300685.1 210134246 7010413 complement(49866..50933) 1 NC_011498.1 cytosine specific DNA methyltransferase 50933 ddeM 7010413 ddeM Helicobacter pylori P12 cytosine specific DNA methyltransferase YP_002300685.1 49866 R 570508 CDS YP_002300686.1 210134247 7010414 complement(50930..52153) 1 NC_011498.1 restriction endonuclease 52153 7010414 HPP12_0046 Helicobacter pylori P12 restriction endonuclease YP_002300686.1 50930 R 570508 CDS YP_002300687.1 210134248 7010415 complement(52297..53568) 1 NC_011498.1 type II R-M system restriction endonuclease 53568 7010415 HPP12_0047 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002300687.1 52297 R 570508 CDS YP_002300688.1 210134249 7010416 complement(53568..56036) 1 NC_011498.1 type II R-M system methyltransferase 56036 7010416 HPP12_0048 Helicobacter pylori P12 type II R-M system methyltransferase YP_002300688.1 53568 R 570508 CDS YP_002300689.1 210134250 7010417 complement(56076..57566) 1 NC_011498.1 sodium/proline symporter 57566 putP 7010417 putP Helicobacter pylori P12 sodium/proline symporter YP_002300689.1 56076 R 570508 CDS YP_002300690.1 210134251 7010418 complement(57593..61150) 1 NC_011498.1 proline/delta 1-pyrroline-5-carboxylate dehydrogenase 61150 putA 7010418 putA Helicobacter pylori P12 proline/delta 1-pyrroline-5-carboxylate dehydrogenase YP_002300690.1 57593 R 570508 CDS YP_002300691.1 210134252 7010419 61472..61681 1 NC_011498.1 hypothetical protein 61681 7010419 HPP12_0051 Helicobacter pylori P12 hypothetical protein YP_002300691.1 61472 D 570508 CDS YP_002300692.1 210134253 7010420 61982..62353 1 NC_011498.1 hypothetical protein 62353 7010420 HPP12_0052 Helicobacter pylori P12 hypothetical protein YP_002300692.1 61982 D 570508 CDS YP_002300693.1 210134254 7010421 62425..62589 1 NC_011498.1 hypothetical protein 62589 7010421 HPP12_0053 Helicobacter pylori P12 hypothetical protein YP_002300693.1 62425 D 570508 CDS YP_002300694.1 210134255 7010422 62547..62735 1 NC_011498.1 hypothetical protein 62735 7010422 HPP12_0054 Helicobacter pylori P12 hypothetical protein YP_002300694.1 62547 D 570508 CDS YP_002300695.1 210134256 7010423 62737..63678 1 NC_011498.1 hypothetical protein 63678 7010423 HPP12_0055 Helicobacter pylori P12 hypothetical protein YP_002300695.1 62737 D 570508 CDS YP_002300696.1 210134257 7010424 63713..64477 1 NC_011498.1 hypothetical protein 64477 7010424 HPP12_0056 Helicobacter pylori P12 hypothetical protein YP_002300696.1 63713 D 570508 CDS YP_002300697.1 210134258 7010425 64478..64630 1 NC_011498.1 hypothetical protein 64630 7010425 HPP12_0057 Helicobacter pylori P12 hypothetical protein YP_002300697.1 64478 D 570508 CDS YP_002300698.1 210134259 7010426 64688..64816 1 NC_011498.1 hypothetical protein 64816 7010426 HPP12_0058 Helicobacter pylori P12 hypothetical protein YP_002300698.1 64688 D 570508 CDS YP_002300699.1 210134260 7010427 64944..65150 1 NC_011498.1 hypothetical protein 65150 7010427 HPP12_0059 Helicobacter pylori P12 hypothetical protein YP_002300699.1 64944 D 570508 CDS YP_002300700.1 210134261 7010428 65194..66138 1 NC_011498.1 hypothetical protein 66138 7010428 HPP12_0060 Helicobacter pylori P12 hypothetical protein YP_002300700.1 65194 D 570508 CDS YP_002300701.1 210134262 7010429 66135..66698 1 NC_011498.1 hypothetical protein 66698 7010429 HPP12_0061 Helicobacter pylori P12 hypothetical protein YP_002300701.1 66135 D 570508 CDS YP_002300702.1 210134263 7010430 66714..66974 1 NC_011498.1 hypothetical protein 66974 7010430 HPP12_0062 Helicobacter pylori P12 hypothetical protein YP_002300702.1 66714 D 570508 CDS YP_002300703.1 210134264 7010431 67070..67612 1 NC_011498.1 hypothetical protein 67612 7010431 HPP12_0063 Helicobacter pylori P12 hypothetical protein YP_002300703.1 67070 D 570508 CDS YP_002300704.1 210134265 7010432 67609..68493 1 NC_011498.1 hypothetical protein 68493 7010432 HPP12_0064 Helicobacter pylori P12 hypothetical protein YP_002300704.1 67609 D 570508 CDS YP_002300705.1 210134266 7010433 68463..68888 1 NC_011498.1 CdrA-like fragment; hypothetical protein 68888 7010433 HPP12_0065 Helicobacter pylori P12 hypothetical protein YP_002300705.1 68463 D 570508 CDS YP_002300706.1 210134267 7010434 68890..69237 1 NC_011498.1 hypothetical protein 69237 7010434 HPP12_0066 Helicobacter pylori P12 hypothetical protein YP_002300706.1 68890 D 570508 CDS YP_002300707.1 210134268 7010435 69230..69658 1 NC_011498.1 ATP-binding protein 69658 7010435 HPP12_0067 Helicobacter pylori P12 ATP-binding protein YP_002300707.1 69230 D 570508 CDS YP_002300708.1 210134269 7010436 69809..70129 1 NC_011498.1 ATP-binding protein 70129 7010436 HPP12_0068 Helicobacter pylori P12 ATP-binding protein YP_002300708.1 69809 D 570508 CDS YP_002300709.1 210134270 7010437 70221..70346 1 NC_011498.1 ATP-binding protein 70346 7010437 HPP12_0069 Helicobacter pylori P12 ATP-binding protein YP_002300709.1 70221 D 570508 CDS YP_002300710.1 210134271 7010438 70353..71651 1 NC_011498.1 ATP-binding protein 71651 7010438 HPP12_0070 Helicobacter pylori P12 ATP-binding protein YP_002300710.1 70353 D 570508 CDS YP_002300711.1 210134272 7010439 complement(71708..72505) 1 NC_011498.1 urease accessory protein UreH 72505 ureH 7010439 ureH Helicobacter pylori P12 urease accessory protein UreH YP_002300711.1 71708 R 570508 CDS YP_002300712.1 210134273 7010440 complement(72505..73104) 1 NC_011498.1 urease accessory protein UreG 73104 ureG 7010440 ureG Helicobacter pylori P12 urease accessory protein UreG YP_002300712.1 72505 R 570508 CDS YP_002300713.1 210134274 7010441 complement(73133..73897) 1 NC_011498.1 urease accessory protein UreF 73897 ureF 7010441 ureF Helicobacter pylori P12 urease accessory protein UreF YP_002300713.1 73133 R 570508 CDS YP_002300714.1 210134275 7010442 complement(73909..74421) 1 NC_011498.1 involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 74421 ureE 7010442 ureE Helicobacter pylori P12 urease accessory protein UreE YP_002300714.1 73909 R 570508 CDS YP_002300715.1 210134276 7010443 complement(74423..75010) 1 NC_011498.1 ph-dependent urea-transporter; urease accessory protein UreI 75010 ureI 7010443 ureI Helicobacter pylori P12 urease accessory protein UreI YP_002300715.1 74423 R 570508 CDS YP_002300716.1 210134277 7010444 complement(75203..76912) 1 NC_011498.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit beta 76912 ureB 7010444 ureB Helicobacter pylori P12 urease subunit beta YP_002300716.1 75203 R 570508 CDS YP_002300717.1 210134278 7010445 complement(76916..77632) 1 NC_011498.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit alpha 77632 ureA 7010445 ureA Helicobacter pylori P12 urease subunit alpha YP_002300717.1 76916 R 570508 CDS YP_002300718.1 210134279 7010447 complement(77977..78450) 1 NC_011498.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 78450 lspA 7010447 lspA Helicobacter pylori P12 lipoprotein signal peptidase YP_002300718.1 77977 R 570508 CDS YP_002300719.1 210134280 7010448 complement(78444..79781) 1 NC_011498.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 79781 glmM 7010448 glmM Helicobacter pylori P12 phosphoglucosamine mutase YP_002300719.1 78444 R 570508 CDS YP_002300720.1 210134281 7010449 79871..80140 1 NC_011498.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 80140 rpsT 7010449 rpsT Helicobacter pylori P12 30S ribosomal protein S20 YP_002300720.1 79871 D 570508 CDS YP_002300721.1 210134282 7010450 80264..81322 1 NC_011498.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 81322 prfA 7010450 prfA Helicobacter pylori P12 peptide chain release factor 1 YP_002300721.1 80264 D 570508 CDS YP_002300722.1 210134283 7010451 81711..81968 1 NC_011498.1 hypothetical protein 81968 7010451 HPP12_0082 Helicobacter pylori P12 hypothetical protein YP_002300722.1 81711 D 570508 CDS YP_002300723.1 210134284 7010452 81979..83373 1 NC_011498.1 outer membrane protein HorA 83373 horA 7010452 horA Helicobacter pylori P12 outer membrane protein HorA YP_002300723.1 81979 D 570508 CDS YP_002300724.1 210134285 7010453 83620..85365 1 NC_011498.1 hypothetical protein 85365 7010453 HPP12_0084 Helicobacter pylori P12 hypothetical protein YP_002300724.1 83620 D 570508 CDS YP_002300725.1 210134286 7010454 complement(85777..87726) 1 NC_011498.1 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) 87726 7010454 HPP12_0085 Helicobacter pylori P12 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) YP_002300725.1 85777 R 570508 CDS YP_002300726.1 210134287 7010455 complement(87954..88343) 1 NC_011498.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 88343 rpsI 7010455 rpsI Helicobacter pylori P12 30S ribosomal protein S9 YP_002300726.1 87954 R 570508 CDS YP_002300727.1 210134288 7010456 complement(88340..88765) 1 NC_011498.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 88765 rplM 7010456 rplM Helicobacter pylori P12 50S ribosomal protein L13 YP_002300727.1 88340 R 570508 CDS YP_002300728.1 210134289 7010457 complement(89077..89265) 1 NC_011498.1 hypothetical protein 89265 7010457 HPP12_0088 Helicobacter pylori P12 hypothetical protein YP_002300728.1 89077 R 570508 CDS YP_002300729.1 210134290 7010458 complement(89272..90624) 1 NC_011498.1 malate:quinone oxidoreductase 90624 7010458 HPP12_0089 Helicobacter pylori P12 malate:quinone oxidoreductase YP_002300729.1 89272 R 570508 CDS YP_002300730.1 210134291 7010459 complement(90678..92051) 1 NC_011498.1 hypothetical protein 92051 7010459 HPP12_0090 Helicobacter pylori P12 hypothetical protein YP_002300730.1 90678 R 570508 CDS YP_002300731.1 210134292 7010460 complement(92072..94114) 1 NC_011498.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 94114 rpoD 7010460 rpoD Helicobacter pylori P12 RNA polymerase sigma factor RpoD YP_002300731.1 92072 R 570508 CDS YP_002300732.1 210134293 7010461 complement(94303..94998) 1 NC_011498.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 94998 7010461 HPP12_0092 Helicobacter pylori P12 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_002300732.1 94303 R 570508 CDS YP_002300733.1 210134294 7010462 complement(95009..95938) 1 NC_011498.1 malonyl coenzyme A-acyl carrier protein transacylase 95938 fabD 7010462 fabD Helicobacter pylori P12 malonyl coenzyme A-acyl carrier protein transacylase YP_002300733.1 95009 R 570508 CDS YP_002300734.1 210134295 7010464 96364..97140 1 NC_011498.1 type II R-M system restriction endonuclease 97140 7010464 HPP12_0094 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002300734.1 96364 D 570508 CDS YP_002300735.1 210134296 7010465 97190..98038 1 NC_011498.1 type II R-M system methyltransferase 98038 7010465 HPP12_0095 Helicobacter pylori P12 type II R-M system methyltransferase YP_002300735.1 97190 D 570508 CDS YP_002300736.1 210134297 7010466 complement(98045..98944) 1 NC_011498.1 alpha-1,2-fucosyltransferase 98944 7010466 HPP12_0096 Helicobacter pylori P12 alpha-1,2-fucosyltransferase YP_002300736.1 98045 R 570508 CDS YP_002300737.1 210134298 7010467 complement(99044..99574) 1 NC_011498.1 hypothetical protein 99574 7010467 HPP12_0097 Helicobacter pylori P12 hypothetical protein YP_002300737.1 99044 R 570508 CDS YP_002300738.1 210134299 7010468 99647..100591 1 NC_011498.1 Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 100591 7010468 HPP12_0098 Helicobacter pylori P12 2-hydroxyacid dehydrogenase YP_002300738.1 99647 D 570508 CDS YP_002300739.1 210134300 7010469 complement(100797..101510) 1 NC_011498.1 hypothetical protein 101510 7010469 HPP12_0099 Helicobacter pylori P12 hypothetical protein YP_002300739.1 100797 R 570508 CDS YP_002300740.1 210134301 7010470 complement(101617..103071) 1 NC_011498.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 103071 thrC 7010470 thrC Helicobacter pylori P12 threonine synthase YP_002300740.1 101617 R 570508 CDS YP_002300741.1 210134302 7010471 103274..105301 1 NC_011498.1 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) 105301 tlpA 7010471 tlpA Helicobacter pylori P12 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) YP_002300741.1 103274 D 570508 CDS YP_002300742.1 210134303 7010472 105301..106407 1 NC_011498.1 hypothetical protein 106407 7010472 HPP12_0102 Helicobacter pylori P12 hypothetical protein YP_002300742.1 105301 D 570508 CDS YP_002300743.1 210134304 7010473 106526..107287 1 NC_011498.1 hypothetical protein 107287 7010473 HPP12_0103 Helicobacter pylori P12 hypothetical protein YP_002300743.1 106526 D 570508 CDS YP_002300744.1 210134305 7010474 complement(107270..108052) 1 NC_011498.1 glycosyl transferase 108052 7010474 HPP12_0104 Helicobacter pylori P12 glycosyl transferase YP_002300744.1 107270 R 570508 CDS YP_002300745.1 210134306 7010475 complement(108084..109769) 1 NC_011498.1 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) 109769 tlpB 7010475 tlpB Helicobacter pylori P12 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) YP_002300745.1 108084 R 570508 CDS YP_002300746.1 210134307 7010476 complement(109981..111726) 1 NC_011498.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase 111726 cpdB 7010476 cpdB Helicobacter pylori P12 2',3'-cyclic-nucleotide 2'-phosphodiesterase YP_002300746.1 109981 R 570508 CDS YP_002300747.1 210134308 7010477 complement(111867..112334) 1 NC_011498.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 112334 7010477 HPP12_0107 Helicobacter pylori P12 S-ribosylhomocysteinase YP_002300747.1 111867 R 570508 CDS YP_002300748.1 210134309 7010478 complement(112372..113514) 1 NC_011498.1 catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine and L-cysteine; or Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine; cystathionine gamma-synthase/cystathionine beta-lyase 113514 metB 7010478 metB Helicobacter pylori P12 cystathionine gamma-synthase/cystathionine beta-lyase YP_002300748.1 112372 R 570508 CDS YP_002300749.1 210134310 7010479 complement(113539..114456) 1 NC_011498.1 cysteine synthetase 114456 cysK 7010479 cysK Helicobacter pylori P12 cysteine synthetase YP_002300749.1 113539 R 570508 CDS YP_002300750.1 210134311 7010480 114571..115056 1 NC_011498.1 hypothetical protein 115056 7010480 HPP12_0110 Helicobacter pylori P12 hypothetical protein YP_002300750.1 114571 D 570508 CDS YP_002300751.1 210134312 7010481 complement(115386..117248) 1 NC_011498.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 117248 dnaK 7010481 dnaK Helicobacter pylori P12 molecular chaperone DnaK YP_002300751.1 115386 R 570508 CDS YP_002300752.1 210134313 7010482 complement(117279..117854) 1 NC_011498.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 117854 grpE 7010482 grpE Helicobacter pylori P12 heat shock protein GrpE YP_002300752.1 117279 R 570508 CDS YP_002300753.1 210134314 7010483 complement(117854..118684) 1 NC_011498.1 Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor 118684 7010483 HPP12_0113 Helicobacter pylori P12 heat-inducible transcription repressor YP_002300753.1 117854 R 570508 CDS YP_002300754.1 210134315 7010484 118895..119533 1 NC_011498.1 hypothetical protein 119533 7010484 HPP12_0114 Helicobacter pylori P12 hypothetical protein YP_002300754.1 118895 D 570508 CDS YP_002300755.1 210134316 7010485 119554..119850 1 NC_011498.1 hypothetical protein 119850 7010485 HPP12_0115 Helicobacter pylori P12 hypothetical protein YP_002300755.1 119554 D 570508 CDS YP_002300756.1 210134317 7010486 complement(119862..121745) 1 NC_011498.1 hypothetical protein 121745 7010486 HPP12_0116 Helicobacter pylori P12 hypothetical protein YP_002300756.1 119862 R 570508 CDS YP_002300757.1 210134318 7010487 complement(121808..123352) 1 NC_011498.1 FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B 123352 flaB 7010487 flaB Helicobacter pylori P12 flagellin B YP_002300757.1 121808 R 570508 CDS YP_002300758.1 210134319 7010488 123518..125728 1 NC_011498.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 125728 topA-1 7010488 topA-1 Helicobacter pylori P12 DNA topoisomerase I YP_002300758.1 123518 D 570508 CDS YP_002300759.1 210134320 7010489 125721..126647 1 NC_011498.1 radical SAM domain-containing protein 126647 7010489 HPP12_0119 Helicobacter pylori P12 radical SAM domain-containing protein YP_002300759.1 125721 D 570508 CDS YP_002300760.1 210134321 7010490 complement(126786..128003) 1 NC_011498.1 hypothetical protein 128003 7010490 HPP12_0120 Helicobacter pylori P12 hypothetical protein YP_002300760.1 126786 R 570508 CDS YP_002300761.1 210134322 7010491 complement(128113..130539) 1 NC_011498.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 130539 ppsA 7010491 ppsA Helicobacter pylori P12 phosphoenolpyruvate synthase YP_002300761.1 128113 R 570508 CDS YP_002300762.1 210134323 7010492 130707..130856 1 NC_011498.1 hypothetical protein 130856 7010492 HPP12_0122 Helicobacter pylori P12 hypothetical protein YP_002300762.1 130707 D 570508 CDS YP_002300763.1 210134324 7010493 130897..132735 1 NC_011498.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 132735 thrS 7010493 thrS Helicobacter pylori P12 threonyl-tRNA synthetase YP_002300763.1 130897 D 570508 CDS YP_002300764.1 210134325 7010494 132732..133343 1 NC_011498.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 133343 infC 7010494 infC Helicobacter pylori P12 translation initiation factor IF-3 YP_002300764.1 132732 D 570508 CDS YP_002300765.1 210134326 7010495 133324..133518 1 NC_011498.1 50S ribosomal protein L35 133518 rpmI 7010495 rpmI Helicobacter pylori P12 50S ribosomal protein L35 YP_002300765.1 133324 D 570508 CDS YP_002300766.1 210134327 7010496 133612..133962 1 NC_011498.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 133962 rplT 7010496 rplT Helicobacter pylori P12 50S ribosomal protein L20 YP_002300766.1 133612 D 570508 CDS YP_002300767.1 210134328 7010497 134162..135022 1 NC_011498.1 outer membrane protein HorB 135022 horB 7010497 horB Helicobacter pylori P12 outer membrane protein HorB YP_002300767.1 134162 D 570508 CDS YP_002300768.1 210134329 7010498 135383..135820 1 NC_011498.1 hypothetical protein 135820 7010498 HPP12_0128 Helicobacter pylori P12 hypothetical protein YP_002300768.1 135383 D 570508 CDS YP_002300769.1 210134330 7010499 136225..137088 1 NC_011498.1 hypothetical protein 137088 7010499 HPP12_0129 Helicobacter pylori P12 hypothetical protein YP_002300769.1 136225 D 570508 CDS YP_002300770.1 210134331 7010500 complement(137728..139095) 1 NC_011498.1 L-serine/L-threonine deaminase 139095 7010500 HPP12_0130 Helicobacter pylori P12 L-serine/L-threonine deaminase YP_002300770.1 137728 R 570508 CDS YP_002300771.1 210134332 7010501 complement(139095..140336) 1 NC_011498.1 L-serine transporter 140336 sdaC 7010501 sdaC Helicobacter pylori P12 L-serine transporter YP_002300771.1 139095 R 570508 CDS YP_002300772.1 210134333 7010502 140630..141979 1 NC_011498.1 tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHP synthase) 141979 7010502 HPP12_0132 Helicobacter pylori P12 tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (DAHP synthase) YP_002300772.1 140630 D 570508 CDS YP_002300773.1 210134334 7010503 142269..142403 1 NC_011498.1 hypothetical protein 142403 7010503 HPP12_0133 Helicobacter pylori P12 hypothetical protein YP_002300773.1 142269 D 570508 CDS YP_002300774.1 210134335 7010504 complement(142646..143104) 1 NC_011498.1 bacterioferritin comigratory protein 143104 bcp 7010504 bcp Helicobacter pylori P12 bacterioferritin comigratory protein YP_002300774.1 142646 R 570508 CDS YP_002300775.1 210134336 7010505 complement(143114..143749) 1 NC_011498.1 hypothetical protein 143749 7010505 HPP12_0135 Helicobacter pylori P12 hypothetical protein YP_002300775.1 143114 R 570508 CDS YP_002300776.1 210134337 7010506 complement(143742..145187) 1 NC_011498.1 iron-sulfur electron transport protein 145187 7010506 HPP12_0136 Helicobacter pylori P12 iron-sulfur electron transport protein YP_002300776.1 143742 R 570508 CDS YP_002300777.1 210134338 7010507 complement(145216..145944) 1 NC_011498.1 Fe-S oxidoreductase 145944 7010507 HPP12_0137 Helicobacter pylori P12 Fe-S oxidoreductase YP_002300777.1 145216 R 570508 CDS YP_002300778.1 210134339 7010508 146167..147816 1 NC_011498.1 L-lactate permease 147816 lldP-1 7010508 lldP-1 Helicobacter pylori P12 L-lactate permease YP_002300778.1 146167 D 570508 CDS YP_002300779.1 210134340 7010509 147873..149528 1 NC_011498.1 L-lactate permease 149528 lldP-2 7010509 lldP-2 Helicobacter pylori P12 L-lactate permease YP_002300779.1 147873 D 570508 CDS YP_002300780.1 210134341 7010510 complement(149479..149784) 1 NC_011498.1 hypothetical protein 149784 7010510 HPP12_0140 Helicobacter pylori P12 hypothetical protein YP_002300780.1 149479 R 570508 CDS YP_002300781.1 210134342 7010511 complement(149774..150643) 1 NC_011498.1 DNA glycosylase MutY 150643 mutY 7010511 mutY Helicobacter pylori P12 DNA glycosylase MutY YP_002300781.1 149774 R 570508 CDS YP_002300782.1 210134343 7010512 complement(150761..152209) 1 NC_011498.1 sodium:sulfate symporter transmembrane region domain-containing protein 152209 7010512 HPP12_0142 Helicobacter pylori P12 sodium:sulfate symporter transmembrane region domain-containing protein YP_002300782.1 150761 R 570508 CDS YP_002300783.1 210134344 7010513 152379..153845 1 NC_011498.1 CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 153845 fixN 7010513 fixN Helicobacter pylori P12 cbb3-type cytochrome c oxidase subunit I YP_002300783.1 152379 D 570508 CDS YP_002300784.1 210134345 7010514 153858..154556 1 NC_011498.1 CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 154556 fixO 7010514 fixO Helicobacter pylori P12 cbb3-type cytochrome c oxidase subunit II YP_002300784.1 153858 D 570508 CDS YP_002300785.1 210134346 7010515 154567..154785 1 NC_011498.1 cytochrome C oxidase subunit Q 154785 fixQ 7010515 fixQ Helicobacter pylori P12 cytochrome C oxidase subunit Q YP_002300785.1 154567 D 570508 CDS YP_002300786.1 210134347 7010516 154787..155665 1 NC_011498.1 cytochrome C oxidase diheme subunit 155665 fixP 7010516 fixP Helicobacter pylori P12 cytochrome C oxidase diheme subunit YP_002300786.1 154787 D 570508 CDS YP_002300787.1 210134348 7010517 155676..155882 1 NC_011498.1 hypothetical protein 155882 7010517 HPP12_0147 Helicobacter pylori P12 hypothetical protein YP_002300787.1 155676 D 570508 CDS YP_002300788.1 210134349 7010518 155983..156570 1 NC_011498.1 hypothetical protein 156570 7010518 HPP12_0148 Helicobacter pylori P12 hypothetical protein YP_002300788.1 155983 D 570508 CDS YP_002300789.1 210134350 7010519 156582..157163 1 NC_011498.1 hypothetical protein 157163 7010519 HPP12_0149 Helicobacter pylori P12 hypothetical protein YP_002300789.1 156582 D 570508 CDS YP_002300790.1 210134351 7010520 157250..158017 1 NC_011498.1 hypothetical protein 158017 7010520 HPP12_0150 Helicobacter pylori P12 hypothetical protein YP_002300790.1 157250 D 570508 CDS YP_002300791.1 210134352 7010521 complement(158014..158877) 1 NC_011498.1 hypothetical protein 158877 7010521 HPP12_0151 Helicobacter pylori P12 hypothetical protein YP_002300791.1 158014 R 570508 CDS YP_002300792.1 210134353 7010522 158975..160018 1 NC_011498.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 160018 recA 7010522 recA Helicobacter pylori P12 recombinase A YP_002300792.1 158975 D 570508 CDS YP_002300793.1 210134354 7010523 160030..161310 1 NC_011498.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 161310 eno 7010523 eno Helicobacter pylori P12 phosphopyruvate hydratase YP_002300793.1 160030 D 570508 CDS YP_002300794.1 210134355 7010524 161303..161578 1 NC_011498.1 hypothetical protein 161578 7010524 HPP12_0154 Helicobacter pylori P12 hypothetical protein YP_002300794.1 161303 D 570508 CDS YP_002300795.1 210134356 7010525 161595..162191 1 NC_011498.1 hypothetical protein 162191 7010525 HPP12_0155 Helicobacter pylori P12 hypothetical protein YP_002300795.1 161595 D 570508 CDS YP_002300796.1 210134357 7010526 162196..162684 1 NC_011498.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 162684 aroK 7010526 aroK Helicobacter pylori P12 shikimate kinase YP_002300796.1 162196 D 570508 CDS YP_002300797.1 210134358 7010527 162706..163662 1 NC_011498.1 general glycosylation pathway protein 163662 7010527 HPP12_0157 Helicobacter pylori P12 general glycosylation pathway protein YP_002300797.1 162706 D 570508 CDS YP_002300798.1 210134359 7010528 complement(163659..164762) 1 NC_011498.1 lipopolysaccharide 1,2-glycosyltransferase 164762 7010528 HPP12_0158 Helicobacter pylori P12 lipopolysaccharide 1,2-glycosyltransferase YP_002300798.1 163659 R 570508 CDS YP_002300799.1 210134360 7010529 164914..165834 1 NC_011498.1 cysteine-rich protein D 165834 hcpD 7010529 hcpD Helicobacter pylori P12 cysteine-rich protein D YP_002300799.1 164914 D 570508 CDS YP_002300800.1 210134361 7010530 complement(166362..167084) 1 NC_011498.1 hypothetical protein 167084 7010530 HPP12_0160 Helicobacter pylori P12 hypothetical protein YP_002300800.1 166362 R 570508 CDS YP_002300801.1 210134362 7010531 complement(167085..168056) 1 NC_011498.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 168056 hemB 7010531 hemB Helicobacter pylori P12 delta-aminolevulinic acid dehydratase YP_002300801.1 167085 R 570508 CDS YP_002300802.1 210134363 7010532 complement(168066..169409) 1 NC_011498.1 histidine kinase sensor protein 169409 7010532 HPP12_0162 Helicobacter pylori P12 histidine kinase sensor protein YP_002300802.1 168066 R 570508 CDS YP_002300803.1 210134364 7010533 complement(169435..170112) 1 NC_011498.1 response regulator 170112 ompR 7010533 ompR Helicobacter pylori P12 response regulator YP_002300803.1 169435 R 570508 CDS YP_002300804.1 210134365 7010534 complement(170348..170824) 1 NC_011498.1 hypothetical protein 170824 7010534 HPP12_0164 Helicobacter pylori P12 hypothetical protein YP_002300804.1 170348 R 570508 CDS YP_002300805.1 210134366 7010535 complement(170803..171066) 1 NC_011498.1 hypothetical protein 171066 7010535 HPP12_0165 Helicobacter pylori P12 hypothetical protein YP_002300805.1 170803 R 570508 CDS YP_002300806.1 210134367 7010536 complement(171096..172376) 1 NC_011498.1 collagenase 172376 7010536 HPP12_0166 Helicobacter pylori P12 collagenase YP_002300806.1 171096 R 570508 CDS YP_002300807.1 210134368 7010537 complement(172379..173086) 1 NC_011498.1 hypothetical protein 173086 7010537 HPP12_0167 Helicobacter pylori P12 hypothetical protein YP_002300807.1 172379 R 570508 CDS YP_002300808.1 210134369 7010538 complement(173156..174247) 1 NC_011498.1 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 174247 prfB 7010538 prfB Helicobacter pylori P12 peptide chain release factor 2 YP_002300808.1 173156 R 570508 CDS YP_002300809.1 210134370 7010539 complement(174308..175483) 1 NC_011498.1 molybdopterin biosynthesis protein 175483 moeA 7010539 moeA Helicobacter pylori P12 molybdopterin biosynthesis protein YP_002300809.1 174308 R 570508 CDS YP_002300810.1 210134371 7010540 complement(175493..176260) 1 NC_011498.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 176260 fliR 7010540 fliR Helicobacter pylori P12 flagellar biosynthesis protein FliR YP_002300810.1 175493 R 570508 CDS YP_002300811.1 210134372 7010541 complement(176254..176982) 1 NC_011498.1 hypothetical protein 176982 7010541 HPP12_0171 Helicobacter pylori P12 hypothetical protein YP_002300811.1 176254 R 570508 CDS YP_002300812.1 210134373 7010542 177456..178355 1 NC_011498.1 peptidyl-prolyl cis-trans isomerase C 178355 7010542 HPP12_0172 Helicobacter pylori P12 peptidyl-prolyl cis-trans isomerase C YP_002300812.1 177456 D 570508 CDS YP_002300813.1 210134374 7010543 178372..179295 1 NC_011498.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 179295 fba 7010543 fba Helicobacter pylori P12 fructose-bisphosphate aldolase YP_002300813.1 178372 D 570508 CDS YP_002300814.1 210134375 7010544 179317..179880 1 NC_011498.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 179880 efp 7010544 efp Helicobacter pylori P12 elongation factor P YP_002300814.1 179317 D 570508 CDS YP_002300815.1 210134376 7010545 complement(180329..180772) 1 NC_011498.1 hypothetical protein 180772 7010545 HPP12_0175 Helicobacter pylori P12 hypothetical protein YP_002300815.1 180329 R 570508 CDS YP_002300816.1 210134377 7010546 180968..181249 1 NC_011498.1 hypothetical protein 181249 7010546 HPP12_0176 Helicobacter pylori P12 hypothetical protein YP_002300816.1 180968 D 570508 CDS YP_002300817.1 210134378 7010547 181258..181527 1 NC_011498.1 hypothetical protein 181527 7010547 HPP12_0177 Helicobacter pylori P12 hypothetical protein YP_002300817.1 181258 D 570508 CDS YP_002300818.1 210134379 7010548 complement(181882..182904) 1 NC_011498.1 sialic acid synthase 182904 7010548 HPP12_0178 Helicobacter pylori P12 sialic acid synthase YP_002300818.1 181882 R 570508 CDS YP_002300819.1 210134380 7010549 complement(182908..183549) 1 NC_011498.1 ABC transporter ATP-binding protein 183549 7010549 HPP12_0179 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002300819.1 182908 R 570508 CDS YP_002300820.1 210134381 7010550 complement(183546..184823) 1 NC_011498.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 184823 7010550 HPP12_0180 Helicobacter pylori P12 apolipoprotein N-acyltransferase YP_002300820.1 183546 R 570508 CDS YP_002300821.1 210134382 7010551 185054..185776 1 NC_011498.1 hypothetical protein 185776 7010551 HPP12_0181 Helicobacter pylori P12 hypothetical protein YP_002300821.1 185054 D 570508 CDS YP_002300822.1 210134383 7010552 185786..187291 1 NC_011498.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 187291 lysS 7010552 lysS Helicobacter pylori P12 lysyl-tRNA synthetase YP_002300822.1 185786 D 570508 CDS YP_002300823.1 210134384 7010553 187291..188541 1 NC_011498.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 188541 glyA 7010553 glyA Helicobacter pylori P12 serine hydroxymethyltransferase YP_002300823.1 187291 D 570508 CDS YP_002300824.1 210134385 7010554 188552..189094 1 NC_011498.1 hypothetical protein 189094 7010554 HPP12_0184 Helicobacter pylori P12 hypothetical protein YP_002300824.1 188552 D 570508 CDS YP_002300825.1 210134386 7010555 189116..189925 1 NC_011498.1 hypothetical protein 189925 7010555 HPP12_0185 Helicobacter pylori P12 hypothetical protein YP_002300825.1 189116 D 570508 CDS YP_002300826.1 210134387 7010556 complement(190314..191033) 1 NC_011498.1 hypothetical protein 191033 7010556 HPP12_0186 Helicobacter pylori P12 hypothetical protein YP_002300826.1 190314 R 570508 CDS YP_002300827.1 210134388 7010557 complement(191073..191534) 1 NC_011498.1 hypothetical protein 191534 7010557 HPP12_0187 Helicobacter pylori P12 hypothetical protein YP_002300827.1 191073 R 570508 CDS YP_002300828.1 210134389 7010558 complement(191535..191867) 1 NC_011498.1 hypothetical protein 191867 7010558 HPP12_0188 Helicobacter pylori P12 hypothetical protein YP_002300828.1 191535 R 570508 CDS YP_002300829.1 210134390 7010559 complement(191854..192030) 1 NC_011498.1 hypothetical protein 192030 7010559 HPP12_0189 Helicobacter pylori P12 hypothetical protein YP_002300829.1 191854 R 570508 CDS YP_002300830.1 210134391 7010560 192189..192722 1 NC_011498.1 hypothetical protein 192722 7010560 HPP12_0190 Helicobacter pylori P12 hypothetical protein YP_002300830.1 192189 D 570508 CDS YP_002300831.1 210134392 7010561 complement(192728..194236) 1 NC_011498.1 phospholipase D-family protein 194236 7010561 HPP12_0191 Helicobacter pylori P12 phospholipase D-family protein YP_002300831.1 192728 R 570508 CDS YP_002300832.1 210134393 7010562 complement(194258..194995) 1 NC_011498.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 194995 frdB 7010562 frdB Helicobacter pylori P12 fumarate reductase iron-sulfur subunit YP_002300832.1 194258 R 570508 CDS YP_002300833.1 210134394 7010563 complement(194988..197132) 1 NC_011498.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 197132 frdA 7010563 frdA Helicobacter pylori P12 fumarate reductase flavoprotein subunit YP_002300833.1 194988 R 570508 CDS YP_002300834.1 210134395 7010564 complement(197142..197909) 1 NC_011498.1 part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit 197909 frdC 7010564 frdC Helicobacter pylori P12 fumarate reductase cytochrome b-556 subunit YP_002300834.1 197142 R 570508 CDS YP_002300835.1 210134396 7010565 198115..198819 1 NC_011498.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 198819 tpiA 7010565 tpiA Helicobacter pylori P12 triosephosphate isomerase YP_002300835.1 198115 D 570508 CDS YP_002300836.1 210134397 7010566 198829..199662 1 NC_011498.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 199662 fabI 7010566 fabI Helicobacter pylori P12 enoyl-(acyl carrier protein) reductase YP_002300836.1 198829 D 570508 CDS YP_002300837.1 210134398 7010567 199662..200672 1 NC_011498.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 200672 lpxD 7010567 lpxD Helicobacter pylori P12 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_002300837.1 199662 D 570508 CDS YP_002300838.1 210134399 7010568 200737..201894 1 NC_011498.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 201894 metK 7010568 metK Helicobacter pylori P12 S-adenosylmethionine synthetase YP_002300838.1 200737 D 570508 CDS YP_002300839.1 210134400 7010569 201961..202374 1 NC_011498.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 202374 ndk 7010569 ndk Helicobacter pylori P12 nucleoside diphosphate kinase YP_002300839.1 201961 D 570508 CDS YP_002300840.1 210134401 7010570 202400..202756 1 NC_011498.1 hypothetical protein 202756 7010570 HPP12_0200 Helicobacter pylori P12 hypothetical protein YP_002300840.1 202400 D 570508 CDS YP_002300841.1 210134402 7010571 202772..202918 1 NC_011498.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 202918 rpmF 7010571 rpmF Helicobacter pylori P12 50S ribosomal protein L32 YP_002300841.1 202772 D 570508 CDS YP_002300842.1 210134403 7010572 202985..204004 1 NC_011498.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 204004 plsX 7010572 plsX Helicobacter pylori P12 putative glycerol-3-phosphate acyltransferase PlsX YP_002300842.1 202985 D 570508 CDS YP_002300843.1 210134404 7010573 204029..205021 1 NC_011498.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 205021 fabH 7010573 fabH Helicobacter pylori P12 3-oxoacyl-(acyl carrier protein) synthase III YP_002300843.1 204029 D 570508 CDS YP_002300844.1 210134405 7010574 205042..205344 1 NC_011498.1 hypothetical protein 205344 7010574 HPP12_0204 Helicobacter pylori P12 hypothetical protein YP_002300844.1 205042 D 570508 CDS YP_002300845.1 210134406 7010575 complement(205634..206017) 1 NC_011498.1 hypothetical protein 206017 7010575 HPP12_0205 Helicobacter pylori P12 hypothetical protein YP_002300845.1 205634 R 570508 CDS YP_002300846.1 210134407 7010576 complement(206033..208924) 1 NC_011498.1 hypothetical protein 208924 7010576 HPP12_0206 Helicobacter pylori P12 hypothetical protein YP_002300846.1 206033 R 570508 CDS YP_002300847.1 210134408 7010577 complement(208897..209211) 1 NC_011498.1 hypothetical protein 209211 7010577 HPP12_0207 Helicobacter pylori P12 hypothetical protein YP_002300847.1 208897 R 570508 CDS YP_002300848.1 210134409 7010578 209308..210414 1 NC_011498.1 ATP/GTP-binding protein; mrp related protein 210414 7010578 HPP12_0208 Helicobacter pylori P12 mrp related protein YP_002300848.1 209308 D 570508 CDS YP_002300849.1 210134410 7010580 211741..213093 1 NC_011498.1 outer membrane protein HofA 213093 hofA 7010580 hofA Helicobacter pylori P12 outer membrane protein HofA YP_002300849.1 211741 D 570508 CDS YP_002300850.1 210134411 7010581 213196..215061 1 NC_011498.1 molecular chaperone; heat shock protein 90 215061 htpG 7010581 htpG Helicobacter pylori P12 heat shock protein 90 YP_002300850.1 213196 D 570508 CDS YP_002300851.1 210134412 7010582 complement(215259..216011) 1 NC_011498.1 cysteine-rich protein A 216011 hcpA 7010582 hcpA Helicobacter pylori P12 cysteine-rich protein A YP_002300851.1 215259 R 570508 CDS YP_002300852.1 210134413 7010583 complement(216092..217243) 1 NC_011498.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 217243 dapE 7010583 dapE Helicobacter pylori P12 succinyl-diaminopimelate desuccinylase YP_002300852.1 216092 R 570508 CDS YP_002300853.1 210134414 7010584 complement(217254..219119) 1 NC_011498.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 219119 gidA 7010584 gidA Helicobacter pylori P12 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_002300853.1 217254 R 570508 CDS YP_002300854.1 210134415 7010585 219215..220861 1 NC_011498.1 sodium-dependent transporter 220861 7010585 HPP12_0215 Helicobacter pylori P12 sodium-dependent transporter YP_002300854.1 219215 D 570508 CDS YP_002300855.1 210134416 7010586 220874..221674 1 NC_011498.1 cdp-diacylglycerol synthetase 221674 cdsA 7010586 cdsA Helicobacter pylori P12 cdp-diacylglycerol synthetase YP_002300855.1 220874 D 570508 CDS YP_002300856.1 210134417 7010587 221675..222781 1 NC_011498.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 222781 7010587 HPP12_0217 Helicobacter pylori P12 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_002300856.1 221675 D 570508 CDS YP_002300857.1 210134418 7010588 join(222832..223119,223121..223960) 1 NC_011498.1 beta-1,4-N-acetylgalactosamyltransferase 223960 7010588 HPP12_0218 Helicobacter pylori P12 beta-1,4-N-acetylgalactosamyltransferase YP_002300857.1 222832 D 570508 CDS YP_002300858.1 210134419 7010589 complement(224028..224579) 1 NC_011498.1 phospholipid-binding protein 224579 7010589 HPP12_0219 Helicobacter pylori P12 phospholipid-binding protein YP_002300858.1 224028 R 570508 CDS YP_002300859.1 210134420 7010590 224725..225186 1 NC_011498.1 hypothetical protein 225186 7010590 HPP12_0220 Helicobacter pylori P12 hypothetical protein YP_002300859.1 224725 D 570508 CDS YP_002300860.1 210134421 7010591 225356..226519 1 NC_011498.1 involved in [Fe-s] cluster synthesis; cysteine desulfurase 226519 7010591 HPP12_0221 Helicobacter pylori P12 cysteine desulfurase YP_002300860.1 225356 D 570508 CDS YP_002300861.1 210134422 7010592 226541..227521 1 NC_011498.1 nifu-like protein 227521 7010592 HPP12_0222 Helicobacter pylori P12 nifu-like protein YP_002300861.1 226541 D 570508 CDS YP_002300862.1 210134423 7010593 227774..227908 1 NC_011498.1 hypothetical protein 227908 7010593 HPP12_0223 Helicobacter pylori P12 hypothetical protein YP_002300862.1 227774 D 570508 CDS YP_002300863.1 210134424 7010594 228020..229366 1 NC_011498.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 229366 radA 7010594 radA Helicobacter pylori P12 DNA repair protein RadA YP_002300863.1 228020 D 570508 CDS YP_002300864.1 210134425 7010595 229490..230569 1 NC_011498.1 peptide methionine sulfoxide reductase 230569 7010595 HPP12_0225 Helicobacter pylori P12 peptide methionine sulfoxide reductase YP_002300864.1 229490 D 570508 CDS YP_002300865.1 210134426 7010596 complement(230920..231753) 1 NC_011498.1 integral membrane protein 231753 7010596 HPP12_0226 Helicobacter pylori P12 integral membrane protein YP_002300865.1 230920 R 570508 CDS YP_002300866.1 210134427 7010597 complement(231966..234053) 1 NC_011498.1 outer membrane protein HopM 234053 hopM 7010597 hopM Helicobacter pylori P12 outer membrane protein HopM YP_002300866.1 231966 R 570508 CDS YP_002300867.1 210134428 7010598 234301..235458 1 NC_011498.1 sulfate permease 235458 7010598 HPP12_0228 Helicobacter pylori P12 sulfate permease YP_002300867.1 234301 D 570508 CDS YP_002300868.1 210134429 7010600 complement(235702..237165) 1 NC_011498.1 outer membrane protein HopA 237165 hopA 7010600 hopA Helicobacter pylori P12 outer membrane protein HopA YP_002300868.1 235702 R 570508 CDS YP_002300869.1 210134430 7010601 complement(237352..238083) 1 NC_011498.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 238083 kdsB 7010601 kdsB Helicobacter pylori P12 3-deoxy-manno-octulosonate cytidylyltransferase YP_002300869.1 237352 R 570508 CDS YP_002300870.1 210134431 7010602 238193..238990 1 NC_011498.1 disulphide isomerase 238990 7010602 HPP12_0231 Helicobacter pylori P12 disulphide isomerase YP_002300870.1 238193 D 570508 CDS YP_002300871.1 210134432 7010603 239006..239659 1 NC_011498.1 hypothetical protein 239659 7010603 HPP12_0232 Helicobacter pylori P12 hypothetical protein YP_002300871.1 239006 D 570508 CDS YP_002300872.1 210134433 7010604 239683..240855 1 NC_011498.1 glutathionespermidine synthetase 240855 7010604 HPP12_0233 Helicobacter pylori P12 glutathionespermidine synthetase YP_002300872.1 239683 D 570508 CDS YP_002300873.1 210134434 7010605 240855..241385 1 NC_011498.1 integral membrane protein 241385 7010605 HPP12_0234 Helicobacter pylori P12 integral membrane protein YP_002300873.1 240855 D 570508 CDS YP_002300874.1 210134435 7010606 complement(242155..243216) 1 NC_011498.1 cysteine-rich protein E 243216 hcpE 7010606 hcpE Helicobacter pylori P12 cysteine-rich protein E YP_002300874.1 242155 R 570508 CDS YP_002300875.1 210134436 7010607 complement(243309..243680) 1 NC_011498.1 hypothetical protein 243680 7010607 HPP12_0236 Helicobacter pylori P12 hypothetical protein YP_002300875.1 243309 R 570508 CDS YP_002300876.1 210134437 7010608 complement(243680..244600) 1 NC_011498.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 244600 hemC 7010608 hemC Helicobacter pylori P12 porphobilinogen deaminase YP_002300876.1 243680 R 570508 CDS YP_002300877.1 210134438 7010609 complement(244611..246344) 1 NC_011498.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 246344 proS 7010609 proS Helicobacter pylori P12 prolyl-tRNA synthetase YP_002300877.1 244611 R 570508 CDS YP_002300878.1 210134439 7010610 complement(246348..247697) 1 NC_011498.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 247697 hemA 7010610 hemA Helicobacter pylori P12 glutamyl-tRNA reductase YP_002300878.1 246348 R 570508 CDS YP_002300879.1 210134440 7010611 complement(247697..248620) 1 NC_011498.1 octaprenyl-diphosphate synthase 248620 ispB 7010611 ispB Helicobacter pylori P12 octaprenyl-diphosphate synthase YP_002300879.1 247697 R 570508 CDS YP_002300880.1 210134441 7010612 complement(248630..249025) 1 NC_011498.1 hypothetical protein 249025 7010612 HPP12_0241 Helicobacter pylori P12 hypothetical protein YP_002300880.1 248630 R 570508 CDS YP_002300881.1 210134442 7010613 complement(249018..249302) 1 NC_011498.1 hypothetical protein 249302 7010613 HPP12_0242 Helicobacter pylori P12 hypothetical protein YP_002300881.1 249018 R 570508 CDS YP_002300882.1 210134443 7010614 complement(249323..249757) 1 NC_011498.1 neutrophil-activating protein A 249757 napA 7010614 napA Helicobacter pylori P12 neutrophil-activating protein A YP_002300882.1 249323 R 570508 CDS YP_002300883.1 210134444 7010615 complement(249963..251108) 1 NC_011498.1 histidine kinase sensor protein 251108 7010615 HPP12_0244 Helicobacter pylori P12 histidine kinase sensor protein YP_002300883.1 249963 R 570508 CDS YP_002300884.1 210134445 7010616 complement(251105..251422) 1 NC_011498.1 hypothetical protein 251422 7010616 HPP12_0245 Helicobacter pylori P12 hypothetical protein YP_002300884.1 251105 R 570508 CDS YP_002300885.1 210134446 7010617 complement(251419..252447) 1 NC_011498.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 252447 flgI 7010617 flgI Helicobacter pylori P12 flagellar basal body P-ring protein YP_002300885.1 251419 R 570508 CDS YP_002300886.1 210134447 7010618 252636..254114 1 NC_011498.1 ATP-dependent RNA helicase 254114 deaD 7010618 deaD Helicobacter pylori P12 ATP-dependent RNA helicase YP_002300886.1 252636 D 570508 CDS YP_002300887.1 210134448 7010619 254135..255223 1 NC_011498.1 spfH domain-containing protein 255223 7010619 HPP12_0248 Helicobacter pylori P12 spfH domain-containing protein YP_002300887.1 254135 D 570508 CDS YP_002300888.1 210134449 7010620 255230..255769 1 NC_011498.1 hypothetical protein 255769 7010620 HPP12_0249 Helicobacter pylori P12 hypothetical protein YP_002300888.1 255230 D 570508 CDS YP_002300889.1 210134450 7010621 complement(255818..257368) 1 NC_011498.1 ATPase protein; oligopeptide permease 257368 7010621 HPP12_0250 Helicobacter pylori P12 oligopeptide permease YP_002300889.1 255818 R 570508 CDS YP_002300890.1 210134451 7010624 258741..260204 1 NC_011498.1 outer membrane protein HopF 260204 hopF 7010624 hopF Helicobacter pylori P12 outer membrane protein HopF YP_002300890.1 258741 D 570508 CDS YP_002300891.1 210134452 7010625 260217..261629 1 NC_011498.1 outer membrane protein HopG 261629 hopG 7010625 hopG Helicobacter pylori P12 outer membrane protein HopG YP_002300891.1 260217 D 570508 CDS YP_002300892.1 210134453 7010626 261727..262962 1 NC_011498.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 262962 purA 7010626 purA Helicobacter pylori P12 adenylosuccinate synthetase YP_002300892.1 261727 D 570508 CDS YP_002300893.1 210134454 7010627 262959..263387 1 NC_011498.1 hypothetical protein 263387 7010627 HPP12_0255 Helicobacter pylori P12 hypothetical protein YP_002300893.1 262959 D 570508 CDS YP_002300894.1 210134455 7010628 263380..264051 1 NC_011498.1 secreted protein 264051 7010628 HPP12_0256 Helicobacter pylori P12 secreted protein YP_002300894.1 263380 D 570508 CDS YP_002300895.1 210134456 7010629 264048..265103 1 NC_011498.1 zinc metalloprotease 265103 7010629 HPP12_0257 Helicobacter pylori P12 zinc metalloprotease YP_002300895.1 264048 D 570508 CDS YP_002300896.1 210134457 7010630 265116..266378 1 NC_011498.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 266378 xseA 7010630 xseA Helicobacter pylori P12 exodeoxyribonuclease VII large subunit YP_002300896.1 265116 D 570508 CDS YP_002300897.1 210134458 7010631 complement(266397..267569) 1 NC_011498.1 type III R-M system methyltransferase 267569 mod-1 7010631 mod-1 Helicobacter pylori P12 type III R-M system methyltransferase YP_002300897.1 266397 R 570508 CDS YP_002300898.1 210134459 7010632 complement(267562..267804) 1 NC_011498.1 hypothetical protein 267804 7010632 HPP12_0260 Helicobacter pylori P12 hypothetical protein YP_002300898.1 267562 R 570508 CDS YP_002300899.1 210134460 7010633 267921..268562 1 NC_011498.1 type II R-M system restriction endonuclease 268562 7010633 HPP12_0261 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002300899.1 267921 D 570508 CDS YP_002300900.1 210134461 7010634 268652..269410 1 NC_011498.1 type II R-M system methyltransferase 269410 hpaim 7010634 hpaim Helicobacter pylori P12 type II R-M system methyltransferase YP_002300900.1 268652 D 570508 CDS YP_002300901.1 210134462 7010635 269483..272053 1 NC_011498.1 heat shock protein; ATP-dependent protease binding subunit 272053 clpB 7010635 clpB Helicobacter pylori P12 ATP-dependent protease binding subunit YP_002300901.1 269483 D 570508 CDS YP_002300902.1 210134463 7010636 272110..272829 1 NC_011498.1 cytochrome C-type biogenesis protein CcdA 272829 ccdA 7010636 ccdA Helicobacter pylori P12 cytochrome C-type biogenesis protein CcdA YP_002300902.1 272110 D 570508 CDS YP_002300903.1 210134464 7010637 272839..273975 1 NC_011498.1 dihydroorotase 273975 pyrC-1 7010637 pyrC-1 Helicobacter pylori P12 dihydroorotase YP_002300903.1 272839 D 570508 CDS YP_002300904.1 210134465 7010638 273960..275189 1 NC_011498.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 275189 7010638 HPP12_0266 Helicobacter pylori P12 chlorohydrolase YP_002300904.1 273960 D 570508 CDS YP_002300905.1 210134466 7010639 275250..275492 1 NC_011498.1 hypothetical protein 275492 7010639 HPP12_0267 Helicobacter pylori P12 hypothetical protein YP_002300905.1 275250 D 570508 CDS YP_002300906.1 210134467 7010640 275502..276815 1 NC_011498.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 276815 7010640 HPP12_0268 Helicobacter pylori P12 (dimethylallyl)adenosine tRNA methylthiotransferase YP_002300906.1 275502 D 570508 CDS YP_002300907.1 210134468 7010641 276854..277507 1 NC_011498.1 hypothetical protein 277507 7010641 HPP12_0269 Helicobacter pylori P12 hypothetical protein YP_002300907.1 276854 D 570508 CDS YP_002300908.1 210134469 7010642 277500..278483 1 NC_011498.1 hypothetical protein 278483 7010642 HPP12_0270 Helicobacter pylori P12 hypothetical protein YP_002300908.1 277500 D 570508 CDS YP_002300909.1 210134470 7010643 278473..279006 1 NC_011498.1 hypothetical protein 279006 7010643 HPP12_0271 Helicobacter pylori P12 hypothetical protein YP_002300909.1 278473 D 570508 CDS YP_002300910.1 210134471 7010644 279003..279542 1 NC_011498.1 hypothetical protein 279542 7010644 HPP12_0272 Helicobacter pylori P12 hypothetical protein YP_002300910.1 279003 D 570508 CDS YP_002300911.1 210134472 7010645 279558..279956 1 NC_011498.1 hypothetical protein 279956 7010645 HPP12_0273 Helicobacter pylori P12 hypothetical protein YP_002300911.1 279558 D 570508 CDS YP_002300912.1 210134473 7010646 279993..281288 1 NC_011498.1 ATP-dependent nuclease 281288 7010646 HPP12_0274 Helicobacter pylori P12 ATP-dependent nuclease YP_002300912.1 279993 D 570508 CDS YP_002300913.1 210134474 7010647 281276..281833 1 NC_011498.1 indole-3-glycerol phosphate synthase 281833 7010647 HPP12_0275 Helicobacter pylori P12 indole-3-glycerol phosphate synthase YP_002300913.1 281276 D 570508 CDS YP_002300914.1 210134475 7010648 281890..282144 1 NC_011498.1 ferredoxin 282144 7010648 HPP12_0276 Helicobacter pylori P12 ferredoxin YP_002300914.1 281890 D 570508 CDS YP_002300915.1 210134476 7010649 282154..283608 1 NC_011498.1 guanosine pentaphosphate phosphohydrolase 283608 7010649 HPP12_0277 Helicobacter pylori P12 guanosine pentaphosphate phosphohydrolase YP_002300915.1 282154 D 570508 CDS YP_002300916.1 210134477 7010650 283605..284627 1 NC_011498.1 lipopolysaccharide heptosyltransferase-1 284627 7010650 HPP12_0278 Helicobacter pylori P12 lipopolysaccharide heptosyltransferase-1 YP_002300916.1 283605 D 570508 CDS YP_002300917.1 210134478 7010651 284624..285610 1 NC_011498.1 acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 285610 7010651 HPP12_0279 Helicobacter pylori P12 lipid A biosynthesis lauroyl acyltransferase YP_002300917.1 284624 D 570508 CDS YP_002300918.1 210134479 7010652 complement(285868..286983) 1 NC_011498.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 286983 tgt 7010652 tgt Helicobacter pylori P12 queuine tRNA-ribosyltransferase YP_002300918.1 285868 R 570508 CDS YP_002300919.1 210134480 7010653 287040..288476 1 NC_011498.1 hypothetical protein 288476 7010653 HPP12_0281 Helicobacter pylori P12 hypothetical protein YP_002300919.1 287040 D 570508 CDS YP_002300920.1 210134481 7010654 288481..289512 1 NC_011498.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 289512 aroB 7010654 aroB Helicobacter pylori P12 3-dehydroquinate synthase YP_002300920.1 288481 D 570508 CDS YP_002300921.1 210134482 7010655 289503..291074 1 NC_011498.1 mechanosensitive ion channel protein 291074 7010655 HPP12_0283 Helicobacter pylori P12 mechanosensitive ion channel protein YP_002300921.1 289503 D 570508 CDS YP_002300922.1 210134483 7010656 291071..292327 1 NC_011498.1 miaB-like tRNA modifying enzyme 292327 7010656 HPP12_0284 Helicobacter pylori P12 miaB-like tRNA modifying enzyme YP_002300922.1 291071 D 570508 CDS YP_002300923.1 210134484 7010657 292314..293966 1 NC_011498.1 metalloprotease; cell division protein FtsH 293966 ftsH-1 7010657 ftsH-1 Helicobacter pylori P12 cell division protein FtsH YP_002300923.1 292314 D 570508 CDS YP_002300924.1 210134485 7010658 293969..294487 1 NC_011498.1 hypothetical protein 294487 7010658 HPP12_0286 Helicobacter pylori P12 hypothetical protein YP_002300924.1 293969 D 570508 CDS YP_002300925.1 210134486 7010659 294500..294973 1 NC_011498.1 hypothetical protein 294973 7010659 HPP12_0287 Helicobacter pylori P12 hypothetical protein YP_002300925.1 294500 D 570508 CDS YP_002300926.1 210134487 7010660 295040..303760 1 NC_011498.1 vacuolating cytotoxin VacA-like protein 303760 7010660 HPP12_0288 Helicobacter pylori P12 vacuolating cytotoxin VacA-like protein YP_002300926.1 295040 D 570508 CDS YP_002300927.1 210134488 7010661 303808..305025 1 NC_011498.1 diaminopimelate decarboxylase 305025 lysA 7010661 lysA Helicobacter pylori P12 diaminopimelate decarboxylase YP_002300927.1 303808 D 570508 CDS YP_002300928.1 210134489 7010662 305030..305320 1 NC_011498.1 chorismate mutase 305320 7010662 HPP12_0290 Helicobacter pylori P12 chorismate mutase YP_002300928.1 305030 D 570508 CDS YP_002300929.1 210134490 7010663 305333..306205 1 NC_011498.1 hypothetical protein 306205 7010663 HPP12_0291 Helicobacter pylori P12 hypothetical protein YP_002300929.1 305333 D 570508 CDS YP_002300930.1 210134491 7010664 306206..307885 1 NC_011498.1 para-aminobenzoate PabA-synthetase 307885 pabB 7010664 pabB Helicobacter pylori P12 para-aminobenzoate PabA-synthetase YP_002300930.1 306206 D 570508 CDS YP_002300931.1 210134492 7010665 308078..309097 1 NC_011498.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 309097 amiE 7010665 amiE Helicobacter pylori P12 acylamide amidohydrolase YP_002300931.1 308078 D 570508 CDS YP_002300932.1 210134493 7010666 complement(309193..311679) 1 NC_011498.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 311679 flgL 7010666 flgL Helicobacter pylori P12 flagellar hook-associated protein FlgL YP_002300932.1 309193 R 570508 CDS YP_002300933.1 210134494 7010667 311923..312237 1 NC_011498.1 50S ribosomal protein L21 312237 rplU 7010667 rplU Helicobacter pylori P12 50S ribosomal protein L21 YP_002300933.1 311923 D 570508 CDS YP_002300934.1 210134495 7010668 312251..312517 1 NC_011498.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 312517 rpmA 7010668 rpmA Helicobacter pylori P12 50S ribosomal protein L27 YP_002300934.1 312251 D 570508 CDS YP_002300935.1 210134496 7010669 312634..314286 1 NC_011498.1 periplasmic dipeptide-binding protein 314286 dppA 7010669 dppA Helicobacter pylori P12 periplasmic dipeptide-binding protein YP_002300935.1 312634 D 570508 CDS YP_002300936.1 210134497 7010670 314297..315301 1 NC_011498.1 dipeptide transport system permease protein 315301 dppB 7010670 dppB Helicobacter pylori P12 dipeptide transport system permease protein YP_002300936.1 314297 D 570508 CDS YP_002300937.1 210134498 7010671 315301..316158 1 NC_011498.1 dipeptide transport system permease protein 316158 dppC 7010671 dppC Helicobacter pylori P12 dipeptide transport system permease protein YP_002300937.1 315301 D 570508 CDS YP_002300938.1 210134499 7010672 316170..317033 1 NC_011498.1 dipeptide ABC transporter 317033 dppD 7010672 dppD Helicobacter pylori P12 dipeptide ABC transporter YP_002300938.1 316170 D 570508 CDS YP_002300939.1 210134500 7010673 317030..317836 1 NC_011498.1 dipeptide ABC transporter 317836 dppF 7010673 dppF Helicobacter pylori P12 dipeptide ABC transporter YP_002300939.1 317030 D 570508 CDS YP_002300940.1 210134501 7010674 317856..318938 1 NC_011498.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 318938 obgE 7010674 obgE Helicobacter pylori P12 GTPase ObgE YP_002300940.1 317856 D 570508 CDS YP_002300941.1 210134502 7010675 319120..320115 1 NC_011498.1 hypothetical protein 320115 7010675 HPP12_0303 Helicobacter pylori P12 hypothetical protein YP_002300941.1 319120 D 570508 CDS YP_002300942.1 210134503 7010676 320355..320909 1 NC_011498.1 hypothetical protein 320909 7010676 HPP12_0304 Helicobacter pylori P12 hypothetical protein YP_002300942.1 320355 D 570508 CDS YP_002300943.1 210134504 7010677 320919..322211 1 NC_011498.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 322211 hemL 7010677 hemL Helicobacter pylori P12 glutamate-1-semialdehyde aminotransferase YP_002300943.1 320919 D 570508 CDS YP_002300944.1 210134505 7010678 322217..322480 1 NC_011498.1 hypothetical protein 322480 7010678 HPP12_0306 Helicobacter pylori P12 hypothetical protein YP_002300944.1 322217 D 570508 CDS YP_002300945.1 210134506 7010679 322496..322900 1 NC_011498.1 hypothetical protein 322900 7010679 HPP12_0307 Helicobacter pylori P12 hypothetical protein YP_002300945.1 322496 D 570508 CDS YP_002300946.1 210134507 7010680 322984..323868 1 NC_011498.1 N-carbamoyl-D-amino acid amidohydrolase 323868 7010680 HPP12_0308 Helicobacter pylori P12 N-carbamoyl-D-amino acid amidohydrolase YP_002300946.1 322984 D 570508 CDS YP_002300947.1 210134508 7010681 323881..324762 1 NC_011498.1 polysaccharide deacetylase 324762 7010681 HPP12_0309 Helicobacter pylori P12 polysaccharide deacetylase YP_002300947.1 323881 D 570508 CDS YP_002300948.1 210134509 7010682 324808..325167 1 NC_011498.1 hypothetical protein 325167 7010682 HPP12_0310 Helicobacter pylori P12 hypothetical protein YP_002300948.1 324808 D 570508 CDS YP_002300949.1 210134510 7010683 325167..326132 1 NC_011498.1 ATP/GTP binding protein 326132 7010683 HPP12_0311 Helicobacter pylori P12 ATP/GTP binding protein YP_002300949.1 325167 D 570508 CDS YP_002300950.1 210134511 7010684 complement(326138..327283) 1 NC_011498.1 nitrite extrusion protein 327283 7010684 HPP12_0312 Helicobacter pylori P12 nitrite extrusion protein YP_002300950.1 326138 R 570508 CDS YP_002300951.1 210134512 7010685 complement(327382..327546) 1 NC_011498.1 hypothetical protein 327546 7010685 HPP12_0313 Helicobacter pylori P12 hypothetical protein YP_002300951.1 327382 R 570508 CDS YP_002300952.1 210134513 7010687 complement(330588..331343) 1 NC_011498.1 heme iron utilization protein 331343 7010687 HPP12_0315 Helicobacter pylori P12 heme iron utilization protein YP_002300952.1 330588 R 570508 CDS YP_002300953.1 210134514 7010688 complement(331404..333029) 1 NC_011498.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 333029 argS 7010688 argS Helicobacter pylori P12 arginyl-tRNA synthetase YP_002300953.1 331404 R 570508 CDS YP_002300954.1 210134515 7010689 complement(333032..333271) 1 NC_011498.1 sec-independent protein translocase protein 333271 tatA 7010689 tatA Helicobacter pylori P12 sec-independent protein translocase protein YP_002300954.1 333032 R 570508 CDS YP_002300955.1 210134516 7010690 complement(333341..333961) 1 NC_011498.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 333961 gmk 7010690 gmk Helicobacter pylori P12 guanylate kinase YP_002300955.1 333341 R 570508 CDS YP_002300956.1 210134517 7010691 complement(333954..335444) 1 NC_011498.1 poly E-rich protein 335444 7010691 HPP12_0319 Helicobacter pylori P12 poly E-rich protein YP_002300956.1 333954 R 570508 CDS YP_002300957.1 210134518 7010692 335587..336129 1 NC_011498.1 membrane-associated cation-independent thermostable nuclease; preferentially cleaves ss-DNA; involved in DNA transformation; nuclease NucT 336129 7010692 HPP12_0320 Helicobacter pylori P12 nuclease NucT YP_002300957.1 335587 D 570508 CDS YP_002300958.1 210134519 7010693 complement(336138..336902) 1 NC_011498.1 outer membrane protein HorC 336902 horC 7010693 horC Helicobacter pylori P12 outer membrane protein HorC YP_002300958.1 336138 R 570508 CDS YP_002300959.1 210134520 7010694 337007..337720 1 NC_011498.1 part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 337720 flgH 7010694 flgH Helicobacter pylori P12 flagellar basal body L-ring protein YP_002300959.1 337007 D 570508 CDS YP_002300960.1 210134521 7010695 337738..338427 1 NC_011498.1 CMP-N-acetylneuraminic acid synthetase 338427 7010695 HPP12_0323 Helicobacter pylori P12 CMP-N-acetylneuraminic acid synthetase YP_002300960.1 337738 D 570508 CDS YP_002300961.1 210134522 7010696 338418..339290 1 NC_011498.1 CMP-N-acetylneuraminic acid synthetase 339290 7010696 HPP12_0324 Helicobacter pylori P12 CMP-N-acetylneuraminic acid synthetase YP_002300961.1 338418 D 570508 CDS YP_002300962.1 210134523 7010697 339287..339829 1 NC_011498.1 flagellar biosynthesis protein G 339829 flaG-1 7010697 flaG-1 Helicobacter pylori P12 flagellar biosynthesis protein G YP_002300962.1 339287 D 570508 CDS YP_002300963.1 210134524 7010698 complement(339762..340700) 1 NC_011498.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 340700 lpxK 7010698 lpxK Helicobacter pylori P12 tetraacyldisaccharide 4'-kinase YP_002300963.1 339762 R 570508 CDS YP_002300964.1 210134525 7010699 complement(340697..341479) 1 NC_011498.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 341479 nadE 7010699 nadE Helicobacter pylori P12 NAD synthetase YP_002300964.1 340697 R 570508 CDS YP_002723858.1 225581509 7565104 341728..342720 1 NC_011498.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 342720 ilvC 7565104 ilvC Helicobacter pylori P12 ketol-acid reductoisomerase YP_002723858.1 341728 D 570508 CDS YP_002300965.1 210134526 7010701 342744..343550 1 NC_011498.1 MinD cell division inhibitor protein 343550 minD 7010701 minD Helicobacter pylori P12 MinD cell division inhibitor protein YP_002300965.1 342744 D 570508 CDS YP_002300966.1 210134527 7010702 343547..343780 1 NC_011498.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 343780 minE 7010702 minE Helicobacter pylori P12 cell division topological specificity factor MinE YP_002300966.1 343547 D 570508 CDS YP_002300967.1 210134528 7010703 343787..344587 1 NC_011498.1 DNA processing protein 344587 dprA 7010703 dprA Helicobacter pylori P12 DNA processing protein YP_002300967.1 343787 D 570508 CDS YP_002300968.1 210134529 7010704 344584..344988 1 NC_011498.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 344988 7010704 HPP12_0331 Helicobacter pylori P12 Holliday junction resolvase-like protein YP_002300968.1 344584 D 570508 CDS YP_002300969.1 210134530 7010705 345121..345888 1 NC_011498.1 cysteine-rich protein H 345888 hcpH 7010705 hcpH Helicobacter pylori P12 cysteine-rich protein H YP_002300969.1 345121 D 570508 CDS YP_002300970.1 210134531 7010706 346075..346413 1 NC_011498.1 hypothetical protein 346413 7010706 HPP12_0333 Helicobacter pylori P12 hypothetical protein YP_002300970.1 346075 D 570508 CDS YP_002300971.1 210134532 7010707 346397..346957 1 NC_011498.1 hypothetical protein 346957 7010707 HPP12_0334 Helicobacter pylori P12 hypothetical protein YP_002300971.1 346397 D 570508 CDS YP_002300972.1 210134533 7010708 346987..347388 1 NC_011498.1 lysozyme-like protein 347388 7010708 HPP12_0335 Helicobacter pylori P12 lysozyme-like protein YP_002300972.1 346987 D 570508 CDS YP_002300973.1 210134534 7010709 347376..347642 1 NC_011498.1 hypothetical protein 347642 7010709 HPP12_0336 Helicobacter pylori P12 hypothetical protein YP_002300973.1 347376 D 570508 CDS YP_002300974.1 210134535 7010710 348032..348328 1 NC_011498.1 hypothetical protein 348328 7010710 HPP12_0337 Helicobacter pylori P12 hypothetical protein YP_002300974.1 348032 D 570508 CDS YP_002300975.1 210134536 7010711 348477..349109 1 NC_011498.1 hypothetical protein 349109 7010711 HPP12_0338 Helicobacter pylori P12 hypothetical protein YP_002300975.1 348477 D 570508 CDS YP_002300976.1 210134537 7010712 349093..349287 1 NC_011498.1 hypothetical protein 349287 7010712 HPP12_0339 Helicobacter pylori P12 hypothetical protein YP_002300976.1 349093 D 570508 CDS YP_002300977.1 210134538 7010713 349463..350266 1 NC_011498.1 hypothetical protein 350266 7010713 HPP12_0340 Helicobacter pylori P12 hypothetical protein YP_002300977.1 349463 D 570508 CDS YP_002300978.1 210134539 7010714 complement(350284..351177) 1 NC_011498.1 pseudouridine synthase D 351177 7010714 HPP12_0341 Helicobacter pylori P12 pseudouridine synthase D YP_002300978.1 350284 R 570508 CDS YP_002300979.1 210134540 7010715 complement(351177..352727) 1 NC_011498.1 single-stranded-DNA-specific exonuclease 352727 recJ 7010715 recJ Helicobacter pylori P12 single-stranded-DNA-specific exonuclease YP_002300979.1 351177 R 570508 CDS YP_002300980.1 210134541 7010716 complement(352736..354352) 1 NC_011498.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 354352 pyrG 7010716 pyrG Helicobacter pylori P12 CTP synthetase YP_002300980.1 352736 R 570508 CDS YP_002300981.1 210134542 7010717 354612..355274 1 NC_011498.1 hypothetical protein 355274 7010717 HPP12_0344 Helicobacter pylori P12 hypothetical protein YP_002300981.1 354612 D 570508 CDS YP_002300982.1 210134543 7010718 355318..357021 1 NC_011498.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 357021 fliF 7010718 fliF Helicobacter pylori P12 flagellar MS-ring protein YP_002300982.1 355318 D 570508 CDS YP_002300983.1 210134544 7010719 357039..358070 1 NC_011498.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 358070 fliG 7010719 fliG Helicobacter pylori P12 flagellar motor switch protein G YP_002300983.1 357039 D 570508 CDS YP_002300984.1 210134545 7010720 358057..358833 1 NC_011498.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 358833 fliH 7010720 fliH Helicobacter pylori P12 flagellar assembly protein H YP_002300984.1 358057 D 570508 CDS YP_002300985.1 210134546 7010721 358836..360686 1 NC_011498.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 360686 dxs 7010721 dxs Helicobacter pylori P12 1-deoxy-D-xylulose-5-phosphate synthase YP_002300985.1 358836 D 570508 CDS YP_002300986.1 210134547 7010722 360683..362497 1 NC_011498.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 362497 lepA 7010722 lepA Helicobacter pylori P12 GTP-binding protein LepA YP_002300986.1 360683 D 570508 CDS YP_002300987.1 210134548 7010723 362555..363268 1 NC_011498.1 hypothetical protein 363268 7010723 HPP12_0350 Helicobacter pylori P12 hypothetical protein YP_002300987.1 362555 D 570508 CDS YP_002300988.1 210134549 7010724 363211..363507 1 NC_011498.1 hypothetical protein 363507 7010724 HPP12_0351 Helicobacter pylori P12 hypothetical protein YP_002300988.1 363211 D 570508 CDS YP_002300989.1 210134550 7010725 complement(364187..364996) 1 NC_011498.1 flagellar basal-body rod protein 364996 flgG-1 7010725 flgG-1 Helicobacter pylori P12 flagellar basal-body rod protein YP_002300989.1 364187 R 570508 CDS YP_002300990.1 210134551 7010726 complement(365050..366336) 1 NC_011498.1 alpha-ketoglutarate permease 366336 kgtP 7010726 kgtP Helicobacter pylori P12 alpha-ketoglutarate permease YP_002300990.1 365050 R 570508 CDS YP_002300991.1 210134552 7010727 complement(366596..369187) 1 NC_011498.1 cell division protein FtsK 369187 ftsK 7010727 ftsK Helicobacter pylori P12 cell division protein FtsK YP_002300991.1 366596 R 570508 CDS YP_002300992.1 210134553 7010728 complement(369184..371520) 1 NC_011498.1 hypothetical protein 371520 7010728 HPP12_0355 Helicobacter pylori P12 hypothetical protein YP_002300992.1 369184 R 570508 CDS YP_002300993.1 210134554 7010729 complement(371517..373442) 1 NC_011498.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 373442 tktA 7010729 tktA Helicobacter pylori P12 transketolase YP_002300993.1 371517 R 570508 CDS YP_002300994.1 210134555 7010730 complement(373489..374331) 1 NC_011498.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 374331 7010730 HPP12_0357 Helicobacter pylori P12 bifunctional riboflavin kinase/FMN adenylyltransferase YP_002300994.1 373489 R 570508 CDS YP_002300995.1 210134556 7010731 complement(374297..375004) 1 NC_011498.1 hemolysin 375004 7010731 HPP12_0358 Helicobacter pylori P12 hemolysin YP_002300995.1 374297 R 570508 CDS YP_002300996.1 210134557 7010732 complement(375004..375519) 1 NC_011498.1 hypothetical protein 375519 7010732 HPP12_0359 Helicobacter pylori P12 hypothetical protein YP_002300996.1 375004 R 570508 CDS YP_002300997.1 210134558 7010733 375586..376509 1 NC_011498.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 376509 pyrB 7010733 pyrB Helicobacter pylori P12 aspartate carbamoyltransferase catalytic subunit YP_002300997.1 375586 D 570508 CDS YP_002300998.1 210134559 7010734 376764..378203 1 NC_011498.1 outer membrane protein HofB 378203 hofB 7010734 hofB Helicobacter pylori P12 outer membrane protein HofB YP_002300998.1 376764 D 570508 CDS YP_002300999.1 210134560 7010735 378294..379949 1 NC_011498.1 multidrug resistance protein 379949 msbA 7010735 msbA Helicobacter pylori P12 multidrug resistance protein YP_002300999.1 378294 D 570508 CDS YP_002301000.1 210134561 7010736 379943..380566 1 NC_011498.1 hypothetical protein 380566 7010736 HPP12_0363 Helicobacter pylori P12 hypothetical protein YP_002301000.1 379943 D 570508 CDS YP_002301001.1 210134562 7010737 380570..381139 1 NC_011498.1 integral membrane protein 381139 7010737 HPP12_0364 Helicobacter pylori P12 integral membrane protein YP_002301001.1 380570 D 570508 CDS YP_002301002.1 210134563 7010738 join(381250..381654,381654..382394) 1 NC_011498.1 hypothetical protein 382394 7010738 HPP12_0365 Helicobacter pylori P12 hypothetical protein YP_002301002.1 381250 D 570508 CDS YP_002301003.1 210134564 7010739 382387..383088 1 NC_011498.1 hypothetical protein 383088 7010739 HPP12_0366 Helicobacter pylori P12 hypothetical protein YP_002301003.1 382387 D 570508 CDS YP_002301004.1 210134565 7010740 383146..384141 1 NC_011498.1 high-affinity nickel transport protein 384141 nixA 7010740 nixA Helicobacter pylori P12 high-affinity nickel transport protein YP_002301004.1 383146 D 570508 CDS YP_002301005.1 210134566 7010741 complement(384145..384660) 1 NC_011498.1 hypothetical protein 384660 7010741 HPP12_0368 Helicobacter pylori P12 hypothetical protein YP_002301005.1 384145 R 570508 CDS YP_002301006.1 210134567 7010742 384797..386113 1 NC_011498.1 secreted protein 386113 7010742 HPP12_0369 Helicobacter pylori P12 secreted protein YP_002301006.1 384797 D 570508 CDS YP_002301007.1 210134568 7010743 complement(386321..386536) 1 NC_011498.1 hypothetical protein 386536 7010743 HPP12_0370 Helicobacter pylori P12 hypothetical protein YP_002301007.1 386321 R 570508 CDS YP_002301008.1 210134569 7010744 complement(386770..386970) 1 NC_011498.1 copper ion binding protein 386970 copP 7010744 copP Helicobacter pylori P12 copper ion binding protein YP_002301008.1 386770 R 570508 CDS YP_002301009.1 210134570 7010745 complement(386971..389196) 1 NC_011498.1 copper-transporting ATPase 389196 copA 7010745 copA Helicobacter pylori P12 copper-transporting ATPase YP_002301009.1 386971 R 570508 CDS YP_002301010.1 210134571 7010746 complement(389193..389906) 1 NC_011498.1 phosphatidylserine synthase 389906 pssA 7010746 pssA Helicobacter pylori P12 phosphatidylserine synthase YP_002301010.1 389193 R 570508 CDS YP_002301011.1 210134572 7010747 complement(389896..390150) 1 NC_011498.1 hypothetical protein 390150 7010747 HPP12_0374 Helicobacter pylori P12 hypothetical protein YP_002301011.1 389896 R 570508 CDS YP_002301012.1 210134573 7010748 complement(390153..392051) 1 NC_011498.1 metalloprotease; cell division protein FtsH 392051 ftsH-2 7010748 ftsH-2 Helicobacter pylori P12 cell division protein FtsH YP_002301012.1 390153 R 570508 CDS YP_002301013.1 210134574 7010749 complement(392069..393058) 1 NC_011498.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 393058 prmA 7010749 prmA Helicobacter pylori P12 ribosomal protein L11 methyltransferase YP_002301013.1 392069 R 570508 CDS YP_002301014.1 210134575 7010750 complement(393059..393433) 1 NC_011498.1 chemotaxis protein 393433 cheY 7010750 cheY Helicobacter pylori P12 chemotaxis protein YP_002301014.1 393059 R 570508 CDS YP_002301015.1 210134576 7010751 393723..394325 1 NC_011498.1 outer membrane protein HorD 394325 horD 7010751 horD Helicobacter pylori P12 outer membrane protein HorD YP_002301015.1 393723 D 570508 CDS YP_002301016.1 210134577 7010753 complement(394489..394896) 1 NC_011498.1 hypothetical protein 394896 7010753 HPP12_0379 Helicobacter pylori P12 hypothetical protein YP_002301016.1 394489 R 570508 CDS YP_002301017.1 210134578 7010754 complement(394899..395141) 1 NC_011498.1 hypothetical protein 395141 7010754 HPP12_0380 Helicobacter pylori P12 hypothetical protein YP_002301017.1 394899 R 570508 CDS YP_002301018.1 210134579 7010755 complement(395135..395671) 1 NC_011498.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 395671 gidB 7010755 gidB Helicobacter pylori P12 16S rRNA methyltransferase GidB YP_002301018.1 395135 R 570508 CDS YP_002301019.1 210134580 7010756 complement(395668..396705) 1 NC_011498.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 396705 queA 7010756 queA Helicobacter pylori P12 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_002301019.1 395668 R 570508 CDS YP_002301020.1 210134581 7010757 complement(396706..397467) 1 NC_011498.1 sec-independent protein translocase subunit 397467 tatB 7010757 tatB Helicobacter pylori P12 sec-independent protein translocase subunit YP_002301020.1 396706 R 570508 CDS YP_002301021.1 210134582 7010758 complement(397460..397942) 1 NC_011498.1 mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase 397942 tatC 7010758 tatC Helicobacter pylori P12 sec-independent translocase YP_002301021.1 397460 R 570508 CDS YP_002301022.1 210134583 7010759 complement(398010..399020) 1 NC_011498.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 399020 ruvB 7010759 ruvB Helicobacter pylori P12 Holliday junction DNA helicase RuvB YP_002301022.1 398010 R 570508 CDS YP_002301023.1 210134584 7010760 complement(399021..399833) 1 NC_011498.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 399833 panB 7010760 panB Helicobacter pylori P12 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_002301023.1 399021 R 570508 CDS YP_002301024.1 210134585 7010761 399982..400704 1 NC_011498.1 hypothetical protein 400704 7010761 HPP12_0387 Helicobacter pylori P12 hypothetical protein YP_002301024.1 399982 D 570508 CDS YP_002301025.1 210134586 7010762 400694..401551 1 NC_011498.1 hypothetical protein 401551 7010762 HPP12_0388 Helicobacter pylori P12 hypothetical protein YP_002301025.1 400694 D 570508 CDS YP_002301026.1 210134587 7010763 401560..402504 1 NC_011498.1 hypothetical protein 402504 7010763 HPP12_0389 Helicobacter pylori P12 hypothetical protein YP_002301026.1 401560 D 570508 CDS YP_002301027.1 210134588 7010764 402514..403836 1 NC_011498.1 metalloendopeptidase related membrane protein 403836 7010764 HPP12_0390 Helicobacter pylori P12 metalloendopeptidase related membrane protein YP_002301027.1 402514 D 570508 CDS YP_002301028.1 210134589 7010765 403839..404426 1 NC_011498.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 404426 minC 7010765 minC Helicobacter pylori P12 septum formation inhibitor YP_002301028.1 403839 D 570508 CDS YP_002301029.1 210134590 7010766 404423..405310 1 NC_011498.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 405310 lpxC 7010766 lpxC Helicobacter pylori P12 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_002301029.1 404423 D 570508 CDS YP_002301030.1 210134591 7010767 405332..405805 1 NC_011498.1 hypothetical protein 405805 7010767 HPP12_0393 Helicobacter pylori P12 hypothetical protein YP_002301030.1 405332 D 570508 CDS YP_002301031.1 210134592 7010768 405859..406740 1 NC_011498.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 406740 thrB 7010768 thrB Helicobacter pylori P12 homoserine kinase YP_002301031.1 405859 D 570508 CDS YP_002301032.1 210134593 7010769 406712..406981 1 NC_011498.1 hypothetical protein 406981 7010769 HPP12_0395 Helicobacter pylori P12 hypothetical protein YP_002301032.1 406712 D 570508 CDS YP_002301033.1 210134594 7010770 406978..409821 1 NC_011498.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 409821 infB 7010770 infB Helicobacter pylori P12 translation initiation factor IF-2 YP_002301033.1 406978 D 570508 CDS YP_002301034.1 210134595 7010771 409821..410156 1 NC_011498.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 410156 rbfA 7010771 rbfA Helicobacter pylori P12 ribosome-binding factor A YP_002301034.1 409821 D 570508 CDS YP_002301035.1 210134596 7010772 410149..410589 1 NC_011498.1 hypothetical protein 410589 7010772 HPP12_0398 Helicobacter pylori P12 hypothetical protein YP_002301035.1 410149 D 570508 CDS YP_002301036.1 210134597 7010773 complement(410697..412685) 1 NC_011498.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 412685 7010773 HPP12_0399 Helicobacter pylori P12 acetyl-CoA synthetase YP_002301036.1 410697 R 570508 CDS YP_002301037.1 210134598 7010774 412884..413996 1 NC_011498.1 integral membrane protein; phosphodiesterase domain-containing protein 413996 7010774 HPP12_0400 Helicobacter pylori P12 phosphodiesterase domain-containing protein YP_002301037.1 412884 D 570508 CDS YP_002301038.1 210134599 7010775 414374..415045 1 NC_011498.1 transcriptional regulator 415045 7010775 HPP12_0401 Helicobacter pylori P12 transcriptional regulator YP_002301038.1 414374 D 570508 CDS YP_002301039.1 210134600 7010776 complement(415561..416604) 1 NC_011498.1 hypothetical protein 416604 7010776 HPP12_0402 Helicobacter pylori P12 hypothetical protein YP_002301039.1 415561 R 570508 CDS YP_002301040.1 210134601 7010777 complement(416635..418836) 1 NC_011498.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 418836 flhA 7010777 flhA Helicobacter pylori P12 flagellar biosynthesis protein FlhA YP_002301040.1 416635 R 570508 CDS YP_002301041.1 210134602 7010778 418976..419248 1 NC_011498.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 419248 rpsO 7010778 rpsO Helicobacter pylori P12 30S ribosomal protein S15 YP_002301041.1 418976 D 570508 CDS YP_002301042.1 210134603 7010779 419278..420567 1 NC_011498.1 hypothetical protein 420567 7010779 HPP12_0405 Helicobacter pylori P12 hypothetical protein YP_002301042.1 419278 D 570508 CDS YP_002301043.1 210134604 7010780 420696..421199 1 NC_011498.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 421199 7010780 HPP12_0406 Helicobacter pylori P12 3-dehydroquinate dehydratase YP_002301043.1 420696 D 570508 CDS YP_002301044.1 210134605 7010781 421213..422286 1 NC_011498.1 proline peptidase 422286 7010781 HPP12_0407 Helicobacter pylori P12 proline peptidase YP_002301044.1 421213 D 570508 CDS YP_002301045.1 210134606 7010782 422283..422774 1 NC_011498.1 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokina se 422774 folK 7010782 folK Helicobacter pylori P12 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokina se YP_002301045.1 422283 D 570508 CDS YP_002301046.1 210134607 7010783 422771..424147 1 NC_011498.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 424147 flhF 7010783 flhF Helicobacter pylori P12 flagellar biosynthesis regulator FlhF YP_002301046.1 422771 D 570508 CDS YP_002301047.1 210134608 7010784 424144..425028 1 NC_011498.1 ATP-binding protein 425028 7010784 HPP12_0410 Helicobacter pylori P12 ATP-binding protein YP_002301047.1 424144 D 570508 CDS YP_002301048.1 210134609 7010785 425033..425347 1 NC_011498.1 hypothetical protein 425347 7010785 HPP12_0411 Helicobacter pylori P12 hypothetical protein YP_002301048.1 425033 D 570508 CDS YP_002301049.1 210134610 7010786 425325..426092 1 NC_011498.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 426092 fliA 7010786 fliA Helicobacter pylori P12 flagellar biosynthesis sigma factor YP_002301049.1 425325 D 570508 CDS YP_002301050.1 210134611 7010787 426085..427149 1 NC_011498.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 427149 fliM 7010787 fliM Helicobacter pylori P12 flagellar motor switch protein FliM YP_002301050.1 426085 D 570508 CDS YP_002301051.1 210134612 7010788 427153..428016 1 NC_011498.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 428016 fliY 7010788 fliY Helicobacter pylori P12 flagellar motor switch protein FliY YP_002301051.1 427153 D 570508 CDS YP_002301052.1 210134613 7010789 428045..428581 1 NC_011498.1 hypothetical protein 428581 7010789 HPP12_0415 Helicobacter pylori P12 hypothetical protein YP_002301052.1 428045 D 570508 CDS YP_002301053.1 210134614 7010790 428578..429075 1 NC_011498.1 hypothetical protein 429075 7010790 HPP12_0416 Helicobacter pylori P12 hypothetical protein YP_002301053.1 428578 D 570508 CDS YP_002301054.1 210134615 7010791 complement(429095..429547) 1 NC_011498.1 ferric uptake regulation protein 429547 fur 7010791 fur Helicobacter pylori P12 ferric uptake regulation protein YP_002301054.1 429095 R 570508 CDS YP_002301055.1 210134616 7010792 complement(429707..430882) 1 NC_011498.1 recombination factor protein RarA 430882 rarA 7010792 rarA Helicobacter pylori P12 recombination factor protein RarA YP_002301055.1 429707 R 570508 CDS YP_002301056.1 210134617 7010793 complement(430879..431250) 1 NC_011498.1 transcriptional activator of heat-shock proteins 431250 hspR 7010793 hspR Helicobacter pylori P12 transcriptional activator of heat-shock proteins YP_002301056.1 430879 R 570508 CDS YP_002301057.1 210134618 7010794 complement(431260..432126) 1 NC_011498.1 CO-chaperone-curved DNA binding protein A 432126 7010794 HPP12_0420 Helicobacter pylori P12 CO-chaperone-curved DNA binding protein A YP_002301057.1 431260 R 570508 CDS YP_002301058.1 210134619 7010795 432294..433544 1 NC_011498.1 hypothetical protein 433544 7010795 HPP12_0421 Helicobacter pylori P12 hypothetical protein YP_002301058.1 432294 D 570508 CDS YP_002301059.1 210134620 7010796 complement(433652..434488) 1 NC_011498.1 DNA-polymerase I-like 5'-3' exonuclease 434488 7010796 HPP12_0422 Helicobacter pylori P12 DNA-polymerase I-like 5'-3' exonuclease YP_002301059.1 433652 R 570508 CDS YP_002301060.1 210134621 7010797 complement(434743..435639) 1 NC_011498.1 two component response regulator 435639 7010797 HPP12_0423 Helicobacter pylori P12 two component response regulator YP_002301060.1 434743 R 570508 CDS YP_002301061.1 210134622 7010798 complement(435661..436881) 1 NC_011498.1 bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein 436881 ispDF 7010798 ispDF Helicobacter pylori P12 bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein YP_002301061.1 435661 R 570508 CDS YP_002301062.1 210134623 7010799 complement(436903..438333) 1 NC_011498.1 serine protease 438333 7010799 HPP12_0425 Helicobacter pylori P12 serine protease YP_002301062.1 436903 R 570508 CDS YP_002301063.1 210134624 7010800 complement(438378..439820) 1 NC_011498.1 amino acid permease 439820 7010800 HPP12_0426 Helicobacter pylori P12 amino acid permease YP_002301063.1 438378 R 570508 CDS YP_002301064.1 210134625 7010801 complement(440034..440636) 1 NC_011498.1 phosphatidylglycerophosphate synthase 440636 pgsA 7010801 pgsA Helicobacter pylori P12 phosphatidylglycerophosphate synthase YP_002301064.1 440034 R 570508 CDS YP_002301065.1 210134626 7010802 complement(440570..441178) 1 NC_011498.1 hypothetical protein 441178 7010802 HPP12_0428 Helicobacter pylori P12 hypothetical protein YP_002301065.1 440570 R 570508 CDS YP_002301066.1 210134627 7010803 complement(441188..441976) 1 NC_011498.1 Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase 441976 7010803 HPP12_0429 Helicobacter pylori P12 7-alpha-hydroxysteroid dehydrogenase YP_002301066.1 441188 R 570508 CDS YP_002301067.1 210134628 7010804 complement(441973..442875) 1 NC_011498.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 442875 dapA 7010804 dapA Helicobacter pylori P12 dihydrodipicolinate synthase YP_002301067.1 441973 R 570508 CDS YP_002301068.1 210134629 7010805 complement(442890..444224) 1 NC_011498.1 zinc protease 444224 7010805 HPP12_0431 Helicobacter pylori P12 zinc protease YP_002301068.1 442890 R 570508 CDS YP_002301069.1 210134630 7010806 complement(444221..445276) 1 NC_011498.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 445276 pyrD 7010806 pyrD Helicobacter pylori P12 dihydroorotate dehydrogenase 2 YP_002301069.1 444221 R 570508 CDS YP_002301070.1 210134631 7010807 complement(445315..447342) 1 NC_011498.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 447342 ppk 7010807 ppk Helicobacter pylori P12 polyphosphate kinase YP_002301070.1 445315 R 570508 CDS YP_002301071.1 210134632 7010809 complement(448002..449183) 1 NC_011498.1 type I R-M system S protein 449183 hsdS-1 7010809 hsdS-1 Helicobacter pylori P12 type I R-M system S protein YP_002301071.1 448002 R 570508 CDS YP_002301072.1 210134633 7010810 complement(449176..450807) 1 NC_011498.1 type I R-M system M protein 450807 hsdM-1 7010810 hsdM-1 Helicobacter pylori P12 type I R-M system M protein YP_002301072.1 449176 R 570508 CDS YP_002301073.1 210134634 7010812 452423..453496 1 NC_011498.1 integrase/recombinase XercD family 453496 7010812 HPP12_0437 Helicobacter pylori P12 integrase/recombinase XercD family YP_002301073.1 452423 D 570508 CDS YP_002301074.1 210134635 7010813 complement(453578..454261) 1 NC_011498.1 hypothetical protein 454261 7010813 HPP12_0438 Helicobacter pylori P12 hypothetical protein YP_002301074.1 453578 R 570508 CDS YP_002301075.1 210134636 7010814 complement(454334..455632) 1 NC_011498.1 VirB6 type IV secretion protein 455632 virb6 7010814 virb6 Helicobacter pylori P12 VirB6 type IV secretion protein YP_002301075.1 454334 R 570508 CDS YP_002301076.1 210134637 7010815 complement(455598..455876) 1 NC_011498.1 hypothetical protein 455876 7010815 HPP12_0440 Helicobacter pylori P12 hypothetical protein YP_002301076.1 455598 R 570508 CDS YP_002301077.1 210134638 7010816 complement(455928..457328) 1 NC_011498.1 hypothetical protein 457328 7010816 HPP12_0441 Helicobacter pylori P12 hypothetical protein YP_002301077.1 455928 R 570508 CDS YP_002301078.1 210134639 7010817 complement(457332..457577) 1 NC_011498.1 hypothetical protein 457577 7010817 HPP12_0442 Helicobacter pylori P12 hypothetical protein YP_002301078.1 457332 R 570508 CDS YP_002301079.1 210134640 7010818 complement(457791..459272) 1 NC_011498.1 hypothetical protein 459272 7010818 HPP12_0443 Helicobacter pylori P12 hypothetical protein YP_002301079.1 457791 R 570508 CDS YP_002301080.1 210134641 7010819 complement(459405..460469) 1 NC_011498.1 hypothetical protein 460469 7010819 HPP12_0444 Helicobacter pylori P12 hypothetical protein YP_002301080.1 459405 R 570508 CDS YP_002301081.1 210134642 7010820 complement(460312..460803) 1 NC_011498.1 hypothetical protein 460803 7010820 HPP12_0445 Helicobacter pylori P12 hypothetical protein YP_002301081.1 460312 R 570508 CDS YP_002301082.1 210134643 7010821 complement(460810..461832) 1 NC_011498.1 hypothetical protein 461832 7010821 HPP12_0446 Helicobacter pylori P12 hypothetical protein YP_002301082.1 460810 R 570508 CDS YP_002301083.1 210134644 7010822 462096..470522 1 NC_011498.1 DNA methylase 470522 7010822 HPP12_0447 Helicobacter pylori P12 DNA methylase YP_002301083.1 462096 D 570508 CDS YP_002301084.1 210134645 7010823 470785..471441 1 NC_011498.1 chromosome partitioning protein 471441 parA 7010823 parA Helicobacter pylori P12 chromosome partitioning protein YP_002301084.1 470785 D 570508 CDS YP_002301085.1 210134646 7010824 471523..471807 1 NC_011498.1 hypothetical protein 471807 7010824 HPP12_0449 Helicobacter pylori P12 hypothetical protein YP_002301085.1 471523 D 570508 CDS YP_002301086.1 210134647 7010825 471839..473017 1 NC_011498.1 hypothetical protein 473017 7010825 HPP12_0450 Helicobacter pylori P12 hypothetical protein YP_002301086.1 471839 D 570508 CDS YP_002301087.1 210134648 7010826 complement(473042..474955) 1 NC_011498.1 relaxase 474955 virD2-1 7010826 virD2-1 Helicobacter pylori P12 relaxase YP_002301087.1 473042 R 570508 CDS YP_002301088.1 210134649 7010827 475253..475567 1 NC_011498.1 hypothetical protein 475567 7010827 HPP12_0452 Helicobacter pylori P12 hypothetical protein YP_002301088.1 475253 D 570508 CDS YP_002301089.1 210134650 7010828 475560..475841 1 NC_011498.1 hypothetical protein 475841 7010828 HPP12_0453 Helicobacter pylori P12 hypothetical protein YP_002301089.1 475560 D 570508 CDS YP_002301090.1 210134651 7010829 complement(476105..477832) 1 NC_011498.1 VirD4 coupling protein 477832 virD4-1 7010829 virD4-1 Helicobacter pylori P12 VirD4 coupling protein YP_002301090.1 476105 R 570508 CDS YP_002301091.1 210134652 7010830 complement(477879..478391) 1 NC_011498.1 hypothetical protein 478391 7010830 HPP12_0455 Helicobacter pylori P12 hypothetical protein YP_002301091.1 477879 R 570508 CDS YP_002301092.1 210134653 7010831 complement(478392..478682) 1 NC_011498.1 hypothetical protein 478682 7010831 HPP12_0456 Helicobacter pylori P12 hypothetical protein YP_002301092.1 478392 R 570508 CDS YP_002301093.1 210134654 7010832 complement(478679..479134) 1 NC_011498.1 hypothetical protein 479134 7010832 HPP12_0457 Helicobacter pylori P12 hypothetical protein YP_002301093.1 478679 R 570508 CDS YP_002301094.1 210134655 7010833 complement(479131..480072) 1 NC_011498.1 VirB11 type IV secretion ATPase 480072 virB11-1 7010833 virB11-1 Helicobacter pylori P12 VirB11 type IV secretion ATPase YP_002301094.1 479131 R 570508 CDS YP_002301095.1 210134656 7010834 complement(480072..480371) 1 NC_011498.1 hypothetical protein 480371 7010834 HPP12_0459 Helicobacter pylori P12 hypothetical protein YP_002301095.1 480072 R 570508 CDS YP_002301096.1 210134657 7010835 complement(480368..480631) 1 NC_011498.1 hypothetical protein 480631 7010835 HPP12_0460 Helicobacter pylori P12 hypothetical protein YP_002301096.1 480368 R 570508 CDS YP_002301097.1 210134658 7010836 complement(480624..480917) 1 NC_011498.1 hypothetical protein 480917 7010836 HPP12_0461 Helicobacter pylori P12 hypothetical protein YP_002301097.1 480624 R 570508 CDS YP_002301098.1 210134659 7010837 complement(480987..482252) 1 NC_011498.1 VirB10 type IV secretion protein 482252 virB10-1 7010837 virB10-1 Helicobacter pylori P12 VirB10 type IV secretion protein YP_002301098.1 480987 R 570508 CDS YP_002301099.1 210134660 7010838 complement(482252..483784) 1 NC_011498.1 VirB9 type IV secretion protein 483784 virB9-1 7010838 virB9-1 Helicobacter pylori P12 VirB9 type IV secretion protein YP_002301099.1 482252 R 570508 CDS YP_002301100.1 210134661 7010839 complement(483784..484953) 1 NC_011498.1 VirB8 type IV secretion protein 484953 virB8-1 7010839 virB8-1 Helicobacter pylori P12 VirB8 type IV secretion protein YP_002301100.1 483784 R 570508 CDS YP_002301101.1 210134662 7010840 complement(484957..485073) 1 NC_011498.1 VirB7 type IV secretion protein 485073 virB7-1 7010840 virB7-1 Helicobacter pylori P12 VirB7 type IV secretion protein YP_002301101.1 484957 R 570508 CDS YP_002301102.1 210134663 7010843 complement(489522..489788) 1 NC_011498.1 VirB3 type IV secretion protein 489788 virB3-1 7010843 virB3-1 Helicobacter pylori P12 VirB3 type IV secretion protein YP_002301102.1 489522 R 570508 CDS YP_002301103.1 210134664 7010844 complement(489789..490091) 1 NC_011498.1 VirB2 type IV secretion protein 490091 virB2-1 7010844 virB2-1 Helicobacter pylori P12 VirB2 type IV secretion protein YP_002301103.1 489789 R 570508 CDS YP_002301104.1 210134665 7010845 complement(490088..490372) 1 NC_011498.1 hypothetical protein 490372 7010845 HPP12_0470 Helicobacter pylori P12 hypothetical protein YP_002301104.1 490088 R 570508 CDS YP_002301105.1 210134666 7010846 complement(490433..491611) 1 NC_011498.1 hypothetical protein 491611 7010846 HPP12_0471 Helicobacter pylori P12 hypothetical protein YP_002301105.1 490433 R 570508 CDS YP_002301106.1 210134667 7010847 complement(491618..491911) 1 NC_011498.1 hypothetical protein 491911 7010847 HPP12_0472 Helicobacter pylori P12 hypothetical protein YP_002301106.1 491618 R 570508 CDS YP_002301107.1 210134668 7010848 complement(491931..492710) 1 NC_011498.1 hypothetical protein 492710 7010848 HPP12_0473 Helicobacter pylori P12 hypothetical protein YP_002301107.1 491931 R 570508 CDS YP_002301108.1 210134669 7010849 complement(494743..496638) 1 NC_011498.1 hypothetical protein 496638 7010849 HPP12_0474 Helicobacter pylori P12 hypothetical protein YP_002301108.1 494743 R 570508 CDS YP_002301109.1 210134670 7010850 complement(496664..497431) 1 NC_011498.1 hypothetical protein 497431 7010850 HPP12_0475 Helicobacter pylori P12 hypothetical protein YP_002301109.1 496664 R 570508 CDS YP_002301110.1 210134671 7010851 complement(497441..497791) 1 NC_011498.1 integral membrane protein 497791 7010851 HPP12_0476 Helicobacter pylori P12 integral membrane protein YP_002301110.1 497441 R 570508 CDS YP_002301111.1 210134672 7010852 complement(497757..499244) 1 NC_011498.1 hypothetical protein 499244 7010852 HPP12_0477 Helicobacter pylori P12 hypothetical protein YP_002301111.1 497757 R 570508 CDS YP_002301112.1 210134673 7010853 complement(499256..499744) 1 NC_011498.1 hypothetical protein 499744 7010853 HPP12_0478 Helicobacter pylori P12 hypothetical protein YP_002301112.1 499256 R 570508 CDS YP_002301113.1 210134674 7010854 complement(499729..501465) 1 NC_011498.1 oligoendopeptidase F 501465 pepF 7010854 pepF Helicobacter pylori P12 oligoendopeptidase F YP_002301113.1 499729 R 570508 CDS YP_002301114.1 210134675 7010855 complement(501563..502813) 1 NC_011498.1 glutathione-regulated potassium-efflux system protein 502813 kefB 7010855 kefB Helicobacter pylori P12 glutathione-regulated potassium-efflux system protein YP_002301114.1 501563 R 570508 CDS YP_002301115.1 210134676 7010856 complement(503132..503692) 1 NC_011498.1 outer membrane protein HorE 503692 horE 7010856 horE Helicobacter pylori P12 outer membrane protein HorE YP_002301115.1 503132 R 570508 CDS YP_002301116.1 210134677 7010857 complement(503736..503897) 1 NC_011498.1 hypothetical protein 503897 7010857 HPP12_0482 Helicobacter pylori P12 hypothetical protein YP_002301116.1 503736 R 570508 CDS YP_002301117.1 210134678 7010858 503916..504656 1 NC_011498.1 molybdenum ABC transporter ModA 504656 modA 7010858 modA Helicobacter pylori P12 molybdenum ABC transporter ModA YP_002301117.1 503916 D 570508 CDS YP_002301118.1 210134679 7010859 504678..505352 1 NC_011498.1 molybdenum ABC transporter ModB 505352 modB 7010859 modB Helicobacter pylori P12 molybdenum ABC transporter ModB YP_002301118.1 504678 D 570508 CDS YP_002301119.1 210134680 7010860 505349..506146 1 NC_011498.1 molybdenum ABC transporter ModD 506146 modD 7010860 modD Helicobacter pylori P12 molybdenum ABC transporter ModD YP_002301119.1 505349 D 570508 CDS YP_002301120.1 210134681 7010861 complement(506265..507656) 1 NC_011498.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 507656 gltX 7010861 gltX Helicobacter pylori P12 glutamyl-tRNA synthetase YP_002301120.1 506265 R 570508 CDS YP_002301121.1 210134682 7010862 507773..508882 1 NC_011498.1 outer membrane protein HopJ 508882 hopJ 7010862 hopJ Helicobacter pylori P12 outer membrane protein HopJ YP_002301121.1 507773 D 570508 CDS YP_002301122.1 210134683 7010863 508891..510528 1 NC_011498.1 type II R-M system methyltransferase 510528 7010863 HPP12_0488 Helicobacter pylori P12 type II R-M system methyltransferase YP_002301122.1 508891 D 570508 CDS YP_002301123.1 210134684 7010864 510494..511336 1 NC_011498.1 DD-heptosyltransferase 511336 7010864 HPP12_0489 Helicobacter pylori P12 DD-heptosyltransferase YP_002301123.1 510494 D 570508 CDS YP_002301124.1 210134685 7010865 511382..513181 1 NC_011498.1 GTP-binding protein of the TypA subfamily 513181 typA 7010865 typA Helicobacter pylori P12 GTP-binding protein of the TypA subfamily YP_002301124.1 511382 D 570508 CDS YP_002301125.1 210134686 7010866 513187..513669 1 NC_011498.1 type II R-M system methyltransferase 513669 7010866 HPP12_0491 Helicobacter pylori P12 type II R-M system methyltransferase YP_002301125.1 513187 D 570508 CDS YP_002301126.1 210134687 7010867 complement(513767..514711) 1 NC_011498.1 catalase like protein 514711 7010867 HPP12_0492 Helicobacter pylori P12 catalase like protein YP_002301126.1 513767 R 570508 CDS YP_002301127.1 210134688 7010868 514988..516574 1 NC_011498.1 outer membrane protein HofC 516574 hofC 7010868 hofC Helicobacter pylori P12 outer membrane protein HofC YP_002301127.1 514988 D 570508 CDS YP_002301128.1 210134689 7010869 516601..518046 1 NC_011498.1 outer membrane protein HofD 518046 hofD 7010869 hofD Helicobacter pylori P12 outer membrane protein HofD YP_002301128.1 516601 D 570508 CDS YP_002301129.1 210134690 7010870 518445..521207 1 NC_011498.1 hypothetical protein 521207 7010870 HPP12_0495 Helicobacter pylori P12 hypothetical protein YP_002301129.1 518445 D 570508 CDS YP_002301130.1 210134691 7010871 521220..521837 1 NC_011498.1 hypothetical protein 521837 7010871 HPP12_0496 Helicobacter pylori P12 hypothetical protein YP_002301130.1 521220 D 570508 CDS YP_002301131.1 210134692 7010872 521843..521977 1 NC_011498.1 hypothetical protein 521977 7010872 HPP12_0497 Helicobacter pylori P12 hypothetical protein YP_002301131.1 521843 D 570508 CDS YP_002301132.1 210134693 7010873 complement(522350..523486) 1 NC_011498.1 potassium channel protein 523486 7010873 HPP12_0498 Helicobacter pylori P12 potassium channel protein YP_002301132.1 522350 R 570508 CDS YP_002301133.1 210134694 7010874 complement(523669..523857) 1 NC_011498.1 required for 70S ribosome assembly; 50S ribosomal protein L28 523857 rpmB 7010874 rpmB Helicobacter pylori P12 50S ribosomal protein L28 YP_002301133.1 523669 R 570508 CDS YP_002301134.1 210134695 7010875 complement(523957..524793) 1 NC_011498.1 flagellar sheath adhesin 524793 7010875 HPP12_0500 Helicobacter pylori P12 flagellar sheath adhesin YP_002301134.1 523957 R 570508 CDS YP_002301135.1 210134696 7010876 524923..525984 1 NC_011498.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 525984 mraY 7010876 mraY Helicobacter pylori P12 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_002301135.1 524923 D 570508 CDS YP_002301136.1 210134697 7010877 525986..527254 1 NC_011498.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 527254 murD 7010877 murD Helicobacter pylori P12 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_002301136.1 525986 D 570508 CDS YP_002301137.1 210134698 7010878 complement(527251..527511) 1 NC_011498.1 hypothetical protein 527511 7010878 HPP12_0503 Helicobacter pylori P12 hypothetical protein YP_002301137.1 527251 R 570508 CDS YP_002301138.1 210134699 7010879 complement(527501..527902) 1 NC_011498.1 thioesterase family protein 527902 ybgC 7010879 ybgC Helicobacter pylori P12 thioesterase family protein YP_002301138.1 527501 R 570508 CDS YP_002301139.1 210134700 7010880 528133..529461 1 NC_011498.1 sodium-and chloride-dependent transporter 529461 7010880 HPP12_0505 Helicobacter pylori P12 sodium-and chloride-dependent transporter YP_002301139.1 528133 D 570508 CDS YP_002301140.1 210134701 7010881 529472..530800 1 NC_011498.1 sodium-and chloride-dependent transporter 530800 7010881 HPP12_0506 Helicobacter pylori P12 sodium-and chloride-dependent transporter YP_002301140.1 529472 D 570508 CDS YP_002301141.1 210134702 7010882 530815..531882 1 NC_011498.1 outer membrane phospholipase A1 precursor 531882 pldA 7010882 pldA Helicobacter pylori P12 outer membrane phospholipase A1 precursor YP_002301141.1 530815 D 570508 CDS YP_002301142.1 210134703 7010883 531938..533062 1 NC_011498.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 533062 dnaN 7010883 dnaN Helicobacter pylori P12 DNA polymerase III subunit beta YP_002301142.1 531938 D 570508 CDS YP_002301143.1 210134704 7010884 533075..535396 1 NC_011498.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 535396 gyrB 7010884 gyrB Helicobacter pylori P12 DNA gyrase subunit B YP_002301143.1 533075 D 570508 CDS YP_002301144.1 210134705 7010885 535442..536434 1 NC_011498.1 hypothetical protein 536434 7010885 HPP12_0510 Helicobacter pylori P12 hypothetical protein YP_002301144.1 535442 D 570508 CDS YP_002301145.1 210134706 7010886 536421..537176 1 NC_011498.1 hypothetical protein 537176 7010886 HPP12_0511 Helicobacter pylori P12 hypothetical protein YP_002301145.1 536421 D 570508 CDS YP_002301146.1 210134707 7010887 537385..538596 1 NC_011498.1 outer membrane protein 538596 7010887 HPP12_0512 Helicobacter pylori P12 outer membrane protein YP_002301146.1 537385 D 570508 CDS YP_002301147.1 210134708 7010888 538596..539234 1 NC_011498.1 UDP-sugar diphosphatase 539234 7010888 HPP12_0513 Helicobacter pylori P12 UDP-sugar diphosphatase YP_002301147.1 538596 D 570508 CDS YP_002301148.1 210134709 7010889 539245..540594 1 NC_011498.1 plasminogen binding protein 540594 7010889 HPP12_0514 Helicobacter pylori P12 plasminogen binding protein YP_002301148.1 539245 D 570508 CDS YP_002301149.1 210134710 7010890 540596..541975 1 NC_011498.1 glycolate oxidase subunit 541975 glcD 7010890 glcD Helicobacter pylori P12 glycolate oxidase subunit YP_002301149.1 540596 D 570508 CDS YP_002301150.1 210134711 7010891 541997..542761 1 NC_011498.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 542761 dapB 7010891 dapB Helicobacter pylori P12 dihydrodipicolinate reductase YP_002301150.1 541997 D 570508 CDS YP_002301151.1 210134712 7010892 543095..543211 1 NC_011498.1 urease-enhancing factor 543211 lpp 7010892 lpp Helicobacter pylori P12 urease-enhancing factor YP_002301151.1 543095 D 570508 CDS YP_002301152.1 210134713 7010893 complement(543478..544923) 1 NC_011498.1 glutamine synthetase 544923 glnA 7010893 glnA Helicobacter pylori P12 glutamine synthetase YP_002301152.1 543478 R 570508 CDS YP_002301153.1 210134714 7010894 545061..547148 1 NC_011498.1 hypothetical protein 547148 7010894 HPP12_0519 Helicobacter pylori P12 hypothetical protein YP_002301153.1 545061 D 570508 CDS YP_002301154.1 210134715 7010895 547211..547660 1 NC_011498.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 547660 rplI 7010895 rplI Helicobacter pylori P12 50S ribosomal protein L9 YP_002301154.1 547211 D 570508 CDS YP_002301155.1 210134716 7010896 547664..548206 1 NC_011498.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 548206 hslV 7010896 hslV Helicobacter pylori P12 ATP-dependent protease peptidase subunit YP_002301155.1 547664 D 570508 CDS YP_002301156.1 210134717 7010897 548206..549537 1 NC_011498.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 549537 hslU 7010897 hslU Helicobacter pylori P12 ATP-dependent protease ATP-binding subunit HslU YP_002301156.1 548206 D 570508 CDS YP_002301157.1 210134718 7010898 549537..550442 1 NC_011498.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 550442 era 7010898 era Helicobacter pylori P12 GTP-binding protein Era YP_002301157.1 549537 D 570508 CDS YP_002301158.1 210134719 7010899 550439..551431 1 NC_011498.1 hypothetical protein 551431 7010899 HPP12_0524 Helicobacter pylori P12 hypothetical protein YP_002301158.1 550439 D 570508 CDS YP_002301159.1 210134720 7010900 complement(551520..552374) 1 NC_011498.1 hypothetical protein 552374 7010900 HPP12_0525 Helicobacter pylori P12 hypothetical protein YP_002301159.1 551520 R 570508 CDS YP_002301160.1 210134721 7010901 552393..552584 1 NC_011498.1 IS606 transposase B-like fragment; hypothetical protein 552584 7010901 HPP12_0526 Helicobacter pylori P12 hypothetical protein YP_002301160.1 552393 D 570508 CDS YP_002301161.1 210134722 7010902 552705..553052 1 NC_011498.1 cagZeta; cag pathogenicity island protein Zeta 553052 cag1 7010902 cag1 Helicobacter pylori P12 cag pathogenicity island protein Zeta YP_002301161.1 552705 D 570508 CDS YP_002301162.1 210134723 7010903 553160..553525 1 NC_011498.1 cagEpsilon; cag pathogenicity island protein Epsilon 553525 cag2 7010903 cag2 Helicobacter pylori P12 cag pathogenicity island protein Epsilon YP_002301162.1 553160 D 570508 CDS YP_002301163.1 210134724 7010904 553525..554970 1 NC_011498.1 cagDelta; cag pathogenicity island protein Delta 554970 cag3 7010904 cag3 Helicobacter pylori P12 cag pathogenicity island protein Delta YP_002301163.1 553525 D 570508 CDS YP_002301164.1 210134725 7010905 554980..555489 1 NC_011498.1 cagGamma; cag pathogenicity island protein Gamma 555489 cag4 7010905 cag4 Helicobacter pylori P12 cag pathogenicity island protein Gamma YP_002301164.1 554980 D 570508 CDS YP_002301165.1 210134726 7010906 complement(555963..558209) 1 NC_011498.1 VirD4-like, cagBeta; cag pathogenicity island protein Beta 558209 cag5 7010906 cag5 Helicobacter pylori P12 cag pathogenicity island protein Beta YP_002301165.1 555963 R 570508 CDS YP_002301166.1 210134727 7010907 complement(558218..559210) 1 NC_011498.1 VirB11-like, cagAlpha; cag pathogenicity island protein Alpha 559210 virB11-2 7010907 virB11-2 Helicobacter pylori P12 cag pathogenicity island protein Alpha YP_002301166.1 558218 R 570508 CDS YP_002301167.1 210134728 7010908 complement(559215..559814) 1 NC_011498.1 cag pathogenicity island protein Z 559814 cagZ 7010908 cagZ Helicobacter pylori P12 cag pathogenicity island protein Z YP_002301167.1 559215 R 570508 CDS YP_002301168.1 210134729 7010909 complement(559964..565669) 1 NC_011498.1 cag pathogenicity island protein Y VirB10-like protein 565669 cagY 7010909 cagY Helicobacter pylori P12 cag pathogenicity island protein Y VirB10-like protein YP_002301168.1 559964 R 570508 CDS YP_002301169.1 210134730 7010910 complement(565684..567252) 1 NC_011498.1 cag pathogenicity island protein X VirB9-like protein 567252 cagX 7010910 cagX Helicobacter pylori P12 cag pathogenicity island protein X VirB9-like protein YP_002301169.1 565684 R 570508 CDS YP_002301170.1 210134731 7010911 complement(567305..568912) 1 NC_011498.1 cag pathogenicity island protein W 568912 cagW 7010911 cagW Helicobacter pylori P12 cag pathogenicity island protein W YP_002301170.1 567305 R 570508 CDS YP_002301171.1 210134732 7010912 complement(568917..569675) 1 NC_011498.1 cag pathogenicity island protein V 569675 cagV 7010912 cagV Helicobacter pylori P12 cag pathogenicity island protein V YP_002301171.1 568917 R 570508 CDS YP_002301172.1 210134733 7010913 570070..570720 1 NC_011498.1 cag pathogenicity island protein U 570720 cagU 7010913 cagU Helicobacter pylori P12 cag pathogenicity island protein U YP_002301172.1 570070 D 570508 CDS YP_002301173.1 210134734 7010914 570733..571575 1 NC_011498.1 cag pathogenicity island protein T 571575 cagT 7010914 cagT Helicobacter pylori P12 cag pathogenicity island protein T YP_002301173.1 570733 D 570508 CDS YP_002301174.1 210134735 7010915 complement(571777..572376) 1 NC_011498.1 cag pathogenicity island protein S 572376 cagS 7010915 cagS Helicobacter pylori P12 cag pathogenicity island protein S YP_002301174.1 571777 R 570508 CDS YP_002301175.1 210134736 7010916 complement(572815..573195) 1 NC_011498.1 cag pathogenicity island protein Q 573195 cagQ 7010916 cagQ Helicobacter pylori P12 cag pathogenicity island protein Q YP_002301175.1 572815 R 570508 CDS YP_002301176.1 210134737 7010917 572903..573205 1 NC_011498.1 cag pathogenicity island protein R 573205 cagR 7010917 cagR Helicobacter pylori P12 cag pathogenicity island protein R YP_002301176.1 572903 D 570508 CDS YP_002301177.1 210134738 7010918 complement(573621..573974) 1 NC_011498.1 cag pathogenicity island protein P 573974 cagP 7010918 cagP Helicobacter pylori P12 cag pathogenicity island protein P YP_002301177.1 573621 R 570508 CDS YP_002301178.1 210134739 7010919 574409..575539 1 NC_011498.1 cag pathogenicity island protein M 575539 cagM 7010919 cagM Helicobacter pylori P12 cag pathogenicity island protein M YP_002301178.1 574409 D 570508 CDS YP_002301179.1 210134740 7010920 575554..576474 1 NC_011498.1 cag pathogenicity island protein N 576474 cagN 7010920 cagN Helicobacter pylori P12 cag pathogenicity island protein N YP_002301179.1 575554 D 570508 CDS YP_002301180.1 210134741 7010921 complement(576555..577268) 1 NC_011498.1 cag pathogenicity island protein L 577268 cagL 7010921 cagL Helicobacter pylori P12 cag pathogenicity island protein L YP_002301180.1 576555 R 570508 CDS YP_002301181.1 210134742 7010922 complement(577265..578410) 1 NC_011498.1 cag pathogenicity island protein I 578410 cagI 7010922 cagI Helicobacter pylori P12 cag pathogenicity island protein I YP_002301181.1 577265 R 570508 CDS YP_002301182.1 210134743 7010923 complement(578421..579533) 1 NC_011498.1 cag pathogenicity island protein H 579533 cagH 7010923 cagH Helicobacter pylori P12 cag pathogenicity island protein H YP_002301182.1 578421 R 570508 CDS YP_002301183.1 210134744 7010924 complement(579550..579978) 1 NC_011498.1 cag pathogenicity island protein G 579978 cagG 7010924 cagG Helicobacter pylori P12 cag pathogenicity island protein G YP_002301183.1 579550 R 570508 CDS YP_002301184.1 210134745 7010925 complement(580037..580843) 1 NC_011498.1 cag pathogenicity island protein F 580843 cagF 7010925 cagF Helicobacter pylori P12 cag pathogenicity island protein F YP_002301184.1 580037 R 570508 CDS YP_002301185.1 210134746 7010926 complement(580845..583796) 1 NC_011498.1 cag pathogenicity island protein E VirB4-like protein 583796 cagE 7010926 cagE Helicobacter pylori P12 cag pathogenicity island protein E VirB4-like protein YP_002301185.1 580845 R 570508 CDS YP_002301186.1 210134747 7010927 complement(583805..584428) 1 NC_011498.1 cag pathogenicity island protein D 584428 cagD 7010927 cagD Helicobacter pylori P12 cag pathogenicity island protein D YP_002301186.1 583805 R 570508 CDS YP_002301187.1 210134748 7010928 complement(584430..584777) 1 NC_011498.1 cag pathogenicity island protein C 584777 cagC 7010928 cagC Helicobacter pylori P12 cag pathogenicity island protein C YP_002301187.1 584430 R 570508 CDS YP_002301188.1 210134749 7010929 complement(584923..585150) 1 NC_011498.1 cag pathogenicity island protein B 585150 cagB 7010929 cagB Helicobacter pylori P12 cag pathogenicity island protein B YP_002301188.1 584923 R 570508 CDS YP_002301189.1 210134750 7010930 585581..589225 1 NC_011498.1 cytotoxin-associated protein A 589225 cagA 7010930 cagA Helicobacter pylori P12 cytotoxin-associated protein A YP_002301189.1 585581 D 570508 CDS YP_002301190.1 210134751 7010931 complement(589771..590538) 1 NC_011498.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 590538 7010931 HPP12_0556 Helicobacter pylori P12 glutamate racemase YP_002301190.1 589771 R 570508 CDS YP_002301191.1 210134752 7010932 complement(590577..591893) 1 NC_011498.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 591893 rho 7010932 rho Helicobacter pylori P12 transcription termination factor Rho YP_002301191.1 590577 R 570508 CDS YP_002301192.1 210134753 7010933 592159..592362 1 NC_011498.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 592362 rpmE 7010933 rpmE Helicobacter pylori P12 50S ribosomal protein L31 YP_002301192.1 592159 D 570508 CDS YP_002301193.1 210134754 7010934 592387..593250 1 NC_011498.1 methylase 593250 7010934 HPP12_0559 Helicobacter pylori P12 methylase YP_002301193.1 592387 D 570508 CDS YP_002301194.1 210134755 7010935 593263..593946 1 NC_011498.1 23S rRNA methyltransferase 593946 7010935 HPP12_0560 Helicobacter pylori P12 23S rRNA methyltransferase YP_002301194.1 593263 D 570508 CDS YP_002301195.1 210134756 7010936 593959..594924 1 NC_011498.1 hypothetical protein 594924 7010936 HPP12_0561 Helicobacter pylori P12 hypothetical protein YP_002301195.1 593959 D 570508 CDS YP_002301196.1 210134757 7010937 594921..595742 1 NC_011498.1 hypothetical protein 595742 7010937 HPP12_0562 Helicobacter pylori P12 hypothetical protein YP_002301196.1 594921 D 570508 CDS YP_002301197.1 210134758 7010938 complement(595811..596275) 1 NC_011498.1 hypothetical protein 596275 7010938 HPP12_0563 Helicobacter pylori P12 hypothetical protein YP_002301197.1 595811 R 570508 CDS YP_002301198.1 210134759 7010939 complement(596710..597648) 1 NC_011498.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 597648 accA 7010939 accA Helicobacter pylori P12 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_002301198.1 596710 R 570508 CDS YP_002301199.1 210134760 7010940 complement(597671..598909) 1 NC_011498.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 598909 7010940 HPP12_0565 Helicobacter pylori P12 3-oxoacyl-(acyl carrier protein) synthase II YP_002301199.1 597671 R 570508 CDS YP_002301200.1 210134761 7010941 complement(599012..599248) 1 NC_011498.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 599248 acpP 7010941 acpP Helicobacter pylori P12 acyl carrier protein YP_002301200.1 599012 R 570508 CDS YP_002301201.1 210134762 7010942 complement(599479..600222) 1 NC_011498.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 600222 fabG 7010942 fabG Helicobacter pylori P12 3-ketoacyl-(acyl-carrier-protein) reductase YP_002301201.1 599479 R 570508 CDS YP_002301202.1 210134763 7010943 complement(600261..600473) 1 NC_011498.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 600473 rpsU 7010943 rpsU Helicobacter pylori P12 30S ribosomal protein S21 YP_002301202.1 600261 R 570508 CDS YP_002301203.1 210134764 7010944 complement(600574..601824) 1 NC_011498.1 hypothetical protein 601824 7010944 HPP12_0569 Helicobacter pylori P12 hypothetical protein YP_002301203.1 600574 R 570508 CDS YP_002301204.1 210134765 7010945 601996..602241 1 NC_011498.1 hypothetical protein 602241 7010945 HPP12_0570 Helicobacter pylori P12 hypothetical protein YP_002301204.1 601996 D 570508 CDS YP_002301205.1 210134766 7010946 complement(602265..602912) 1 NC_011498.1 hypothetical protein 602912 7010946 HPP12_0571 Helicobacter pylori P12 hypothetical protein YP_002301205.1 602265 R 570508 CDS YP_002301206.1 210134767 7010947 complement(603019..603837) 1 NC_011498.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 603837 dapF 7010947 dapF Helicobacter pylori P12 diaminopimelate epimerase YP_002301206.1 603019 R 570508 CDS YP_002301207.1 210134768 7010948 603952..604998 1 NC_011498.1 outer membrane protein 604998 7010948 HPP12_0573 Helicobacter pylori P12 outer membrane protein YP_002301207.1 603952 D 570508 CDS YP_002301208.1 210134769 7010949 complement(605133..605900) 1 NC_011498.1 radical SAM domain-containing protein 605900 7010949 HPP12_0574 Helicobacter pylori P12 radical SAM domain-containing protein YP_002301208.1 605133 R 570508 CDS YP_002301209.1 210134770 7010950 complement(606035..607135) 1 NC_011498.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 607135 7010950 HPP12_0575 Helicobacter pylori P12 GTP-dependent nucleic acid-binding protein EngD YP_002301209.1 606035 R 570508 CDS YP_002301210.1 210134771 7010951 complement(607137..608627) 1 NC_011498.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 608627 pepA 7010951 pepA Helicobacter pylori P12 leucyl aminopeptidase YP_002301210.1 607137 R 570508 CDS YP_002301211.1 210134772 7010952 complement(608675..609253) 1 NC_011498.1 integral membrane protein 609253 7010952 HPP12_0577 Helicobacter pylori P12 integral membrane protein YP_002301211.1 608675 R 570508 CDS YP_002301212.1 210134773 7010953 complement(609268..609807) 1 NC_011498.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 609807 apt 7010953 apt Helicobacter pylori P12 adenine phosphoribosyltransferase YP_002301212.1 609268 R 570508 CDS YP_002301213.1 210134774 7010954 complement(609865..610197) 1 NC_011498.1 hypothetical protein 610197 7010954 HPP12_0579 Helicobacter pylori P12 hypothetical protein YP_002301213.1 609865 R 570508 CDS YP_002301214.1 210134775 7010955 complement(610251..610706) 1 NC_011498.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 610706 rpiB 7010955 rpiB Helicobacter pylori P12 ribose-5-phosphate isomerase B YP_002301214.1 610251 R 570508 CDS YP_002301215.1 210134776 7010956 complement(610727..611425) 1 NC_011498.1 membrane protein 611425 7010956 HPP12_0581 Helicobacter pylori P12 membrane protein YP_002301215.1 610727 R 570508 CDS YP_002301216.1 210134777 7010957 complement(611434..612306) 1 NC_011498.1 signal peptidase I 612306 lepB 7010957 lepB Helicobacter pylori P12 signal peptidase I YP_002301216.1 611434 R 570508 CDS YP_002301217.1 210134778 7009717 complement(612307..613179) 1 NC_011498.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 613179 folD 7009717 folD Helicobacter pylori P12 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_002301217.1 612307 R 570508 CDS YP_002301218.1 210134779 7009718 complement(613259..615289) 1 NC_011498.1 hypothetical protein 615289 7009718 HPP12_0584 Helicobacter pylori P12 hypothetical protein YP_002301218.1 613259 R 570508 CDS YP_002301219.1 210134780 7009719 complement(615295..615849) 1 NC_011498.1 hypothetical protein 615849 7009719 HPP12_0585 Helicobacter pylori P12 hypothetical protein YP_002301219.1 615295 R 570508 CDS YP_002301220.1 210134781 7009720 complement(615856..616974) 1 NC_011498.1 sialidase; neuraminidase 616974 7009720 HPP12_0586 Helicobacter pylori P12 neuraminidase YP_002301220.1 615856 R 570508 CDS YP_002301221.1 210134782 7009721 complement(616950..617969) 1 NC_011498.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 617969 pyrC-2 7009721 pyrC-2 Helicobacter pylori P12 dihydroorotase YP_002301221.1 616950 R 570508 CDS YP_002301222.1 210134783 7009722 complement(617973..618947) 1 NC_011498.1 siderophore-mediated iron transport protein 618947 7009722 HPP12_0588 Helicobacter pylori P12 siderophore-mediated iron transport protein YP_002301222.1 617973 R 570508 CDS YP_002301223.1 210134784 7009723 complement(618931..619812) 1 NC_011498.1 hypothetical protein 619812 7009723 HPP12_0589 Helicobacter pylori P12 hypothetical protein YP_002301223.1 618931 R 570508 CDS YP_002301224.1 210134785 7009724 complement(619809..620180) 1 NC_011498.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 620180 fliN 7009724 fliN Helicobacter pylori P12 flagellar motor switch protein YP_002301224.1 619809 R 570508 CDS YP_002301225.1 210134786 7009725 complement(620262..620918) 1 NC_011498.1 endonuclease III 620918 nth 7009725 nth Helicobacter pylori P12 endonuclease III YP_002301225.1 620262 R 570508 CDS YP_002301226.1 210134787 7009726 complement(620915..621145) 1 NC_011498.1 ferrous iron transport protein A 621145 7009726 HPP12_0592 Helicobacter pylori P12 ferrous iron transport protein A YP_002301226.1 620915 R 570508 CDS YP_002301227.1 210134788 7009727 complement(621142..624078) 1 NC_011498.1 hypothetical protein 624078 7009727 HPP12_0593 Helicobacter pylori P12 hypothetical protein YP_002301227.1 621142 R 570508 CDS YP_002301228.1 210134789 7009728 623996..624985 1 NC_011498.1 aminodeoxychorismate lyase 624985 pabC 7009728 pabC Helicobacter pylori P12 aminodeoxychorismate lyase YP_002301228.1 623996 D 570508 CDS YP_002301229.1 210134790 7009729 625170..625511 1 NC_011498.1 2-oxoglutarate-acceptor oxidoreductase subunit OorD 625511 oorD 7009729 oorD Helicobacter pylori P12 2-oxoglutarate-acceptor oxidoreductase subunit OorD YP_002301229.1 625170 D 570508 CDS YP_002301230.1 210134791 7009730 625511..626638 1 NC_011498.1 2-oxoglutarate-acceptor oxidoreductase subunit OorA 626638 oorA 7009730 oorA Helicobacter pylori P12 2-oxoglutarate-acceptor oxidoreductase subunit OorA YP_002301230.1 625511 D 570508 CDS YP_002301231.1 210134792 7009731 626640..627461 1 NC_011498.1 2-oxoglutarate-acceptor oxidoreductase subunit OorB 627461 oorB 7009731 oorB Helicobacter pylori P12 2-oxoglutarate-acceptor oxidoreductase subunit OorB YP_002301231.1 626640 D 570508 CDS YP_002301232.1 210134793 7009732 627461..628024 1 NC_011498.1 2-oxoglutarate-acceptor oxidoreductase subunit OorC 628024 oorC 7009732 oorC Helicobacter pylori P12 2-oxoglutarate-acceptor oxidoreductase subunit OorC YP_002301232.1 627461 D 570508 CDS YP_002301233.1 210134794 7009733 628179..631121 1 NC_011498.1 type III R-M system restriction enzyme 631121 res-1 7009733 res-1 Helicobacter pylori P12 type III R-M system restriction enzyme YP_002301233.1 628179 D 570508 CDS YP_002301234.1 210134795 7009735 633095..633259 1 NC_011498.1 hypothetical protein 633259 7009735 HPP12_0601 Helicobacter pylori P12 hypothetical protein YP_002301234.1 633095 D 570508 CDS YP_002301235.1 210134796 7009736 633269..634741 1 NC_011498.1 dsbb-like protein 634741 7009736 HPP12_0602 Helicobacter pylori P12 dsbb-like protein YP_002301235.1 633269 D 570508 CDS YP_002301236.1 210134797 7009737 635217..635795 1 NC_011498.1 Tip-alpha; forms a dimer; found in culture supernatant; induces TNF-alpha and NF-kappa-B in cell cultures of mouse cells; tumor necrosis factor alpha-inducing protein 635795 7009737 HPP12_0603 Helicobacter pylori P12 tumor necrosis factor alpha-inducing protein YP_002301236.1 635217 D 570508 CDS YP_002301237.1 210134798 7009738 complement(635798..637777) 1 NC_011498.1 penicillin-binding protein 1A 637777 pbp-1a 7009738 pbp-1a Helicobacter pylori P12 penicillin-binding protein 1A YP_002301237.1 635798 R 570508 CDS YP_002301238.1 210134799 7009739 complement(637778..638899) 1 NC_011498.1 8-amino-7-oxononanoate synthase 638899 bioF 7009739 bioF Helicobacter pylori P12 8-amino-7-oxononanoate synthase YP_002301238.1 637778 R 570508 CDS YP_002301239.1 210134800 7009740 complement(638922..640223) 1 NC_011498.1 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) 640223 7009740 HPP12_0606 Helicobacter pylori P12 methyl-accepting chemotaxis transmembrane sensory protein (MCP-like protein) YP_002301239.1 638922 R 570508 CDS YP_002301240.1 210134801 7009741 complement(640295..641209) 1 NC_011498.1 multidrug resistance protein 641209 spab 7009741 spab Helicobacter pylori P12 multidrug resistance protein YP_002301240.1 640295 R 570508 CDS YP_002301241.1 210134802 7009742 complement(641175..642074) 1 NC_011498.1 multidrug resistance protein 642074 7009742 HPP12_0608 Helicobacter pylori P12 multidrug resistance protein YP_002301241.1 641175 R 570508 CDS YP_002301242.1 210134803 7009743 642238..643770 1 NC_011498.1 FlaA; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin A 643770 flaA 7009743 flaA Helicobacter pylori P12 flagellin A YP_002301242.1 642238 D 570508 CDS YP_002301243.1 210134804 7009744 643912..644568 1 NC_011498.1 3-methyladenine DNA glycosylase 644568 7009744 HPP12_0610 Helicobacter pylori P12 3-methyladenine DNA glycosylase YP_002301243.1 643912 D 570508 CDS YP_002301244.1 210134805 7009745 644565..645182 1 NC_011498.1 hypothetical protein 645182 7009745 HPP12_0611 Helicobacter pylori P12 hypothetical protein YP_002301244.1 644565 D 570508 CDS YP_002301245.1 210134806 7009746 645251..646270 1 NC_011498.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 646270 hemE 7009746 hemE Helicobacter pylori P12 uroporphyrinogen decarboxylase YP_002301245.1 645251 D 570508 CDS YP_002301246.1 210134807 7009747 646279..647712 1 NC_011498.1 outer-membrane protein of the HefABC efflux system HefA 647712 hefA 7009747 hefA Helicobacter pylori P12 outer-membrane protein of the HefABC efflux system HefA YP_002301246.1 646279 D 570508 CDS YP_002301247.1 210134808 7009748 647723..648427 1 NC_011498.1 membrane fusion protein of the HefABC efflux system HefB 648427 hefB 7009748 hefB Helicobacter pylori P12 membrane fusion protein of the HefABC efflux system HefB YP_002301247.1 647723 D 570508 CDS YP_002301248.1 210134809 7009749 648440..651526 1 NC_011498.1 cytoplasmic pump protein of the HefABC efflux system HefC 651526 hefC 7009749 hefC Helicobacter pylori P12 cytoplasmic pump protein of the HefABC efflux system HefC YP_002301248.1 648440 D 570508 CDS YP_002301249.1 210134810 7009750 651523..652092 1 NC_011498.1 hypothetical protein 652092 7009750 HPP12_0616 Helicobacter pylori P12 hypothetical protein YP_002301249.1 651523 D 570508 CDS YP_002301250.1 210134811 7009751 652243..660750 1 NC_011498.1 vacuolating cytotoxin VacA-like protein 660750 7009751 HPP12_0617 Helicobacter pylori P12 vacuolating cytotoxin VacA-like protein YP_002301250.1 652243 D 570508 CDS YP_002301251.1 210134812 7009752 660696..661814 1 NC_011498.1 vacuolating cytotoxin VacA-like protein 661814 7009752 HPP12_0618 Helicobacter pylori P12 vacuolating cytotoxin VacA-like protein YP_002301251.1 660696 D 570508 CDS YP_002301252.1 210134813 7009753 complement(661873..662382) 1 NC_011498.1 ABC transporter permease 662382 7009753 HPP12_0619 Helicobacter pylori P12 ABC transporter permease YP_002301252.1 661873 R 570508 CDS YP_002301253.1 210134814 7009754 complement(662390..662629) 1 NC_011498.1 ABC transporter permease 662629 7009754 HPP12_0620 Helicobacter pylori P12 ABC transporter permease YP_002301253.1 662390 R 570508 CDS YP_002301254.1 210134815 7009755 complement(662629..663105) 1 NC_011498.1 ABC transporter ATP-binding protein 663105 7009755 HPP12_0621 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002301254.1 662629 R 570508 CDS YP_002301255.1 210134816 7009756 complement(663089..663331) 1 NC_011498.1 ABC transporter ATP-binding protein 663331 7009756 HPP12_0622 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002301255.1 663089 R 570508 CDS YP_002301256.1 210134817 7009757 complement(663640..663972) 1 NC_011498.1 hypothetical protein 663972 7009757 HPP12_0623 Helicobacter pylori P12 hypothetical protein YP_002301256.1 663640 R 570508 CDS YP_002301257.1 210134818 7009758 complement(664126..666096) 1 NC_011498.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 666096 ligA 7009758 ligA Helicobacter pylori P12 NAD-dependent DNA ligase LigA YP_002301257.1 664126 R 570508 CDS YP_002301258.1 210134819 7009759 666174..667115 1 NC_011498.1 CheA-MCP interaction modulator; chemotaxis protein 667115 cheV-2 7009759 cheV-2 Helicobacter pylori P12 chemotaxis protein YP_002301258.1 666174 D 570508 CDS YP_002301259.1 210134820 7009760 667150..668883 1 NC_011498.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 668883 aspS 7009760 aspS Helicobacter pylori P12 aspartyl-tRNA synthetase YP_002301259.1 667150 D 570508 CDS YP_002301260.1 210134821 7009761 668900..669475 1 NC_011498.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 669475 adk 7009761 adk Helicobacter pylori P12 adenylate kinase YP_002301260.1 668900 D 570508 CDS YP_002301261.1 210134822 7009762 669500..670717 1 NC_011498.1 lipopolysaccharide biosynthesis protein 670717 7009762 HPP12_0628 Helicobacter pylori P12 lipopolysaccharide biosynthesis protein YP_002301261.1 669500 D 570508 CDS YP_002301262.1 210134823 7009763 670773..671294 1 NC_011498.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 671294 ppa 7009763 ppa Helicobacter pylori P12 inorganic pyrophosphatase YP_002301262.1 670773 D 570508 CDS YP_002301263.1 210134824 7009764 671370..671933 1 NC_011498.1 hypothetical protein 671933 7009764 HPP12_0630 Helicobacter pylori P12 hypothetical protein YP_002301263.1 671370 D 570508 CDS YP_002301264.1 210134825 7009765 671950..672867 1 NC_011498.1 hypothetical protein 672867 7009765 HPP12_0631 Helicobacter pylori P12 hypothetical protein YP_002301264.1 671950 D 570508 CDS YP_002301265.1 210134826 7009766 672946..673329 1 NC_011498.1 hypothetical protein 673329 7009766 HPP12_0632 Helicobacter pylori P12 hypothetical protein YP_002301265.1 672946 D 570508 CDS YP_002301266.1 210134827 7009767 673284..673793 1 NC_011498.1 hypothetical protein 673793 7009767 HPP12_0633 Helicobacter pylori P12 hypothetical protein YP_002301266.1 673284 D 570508 CDS YP_002301267.1 210134828 7009768 complement(673939..676191) 1 NC_011498.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 676191 mutS 7009768 mutS Helicobacter pylori P12 recombination and DNA strand exchange inhibitor protein YP_002301267.1 673939 R 570508 CDS YP_002301268.1 210134829 7009769 complement(676188..676565) 1 NC_011498.1 hypothetical protein 676565 7009769 HPP12_0635 Helicobacter pylori P12 hypothetical protein YP_002301268.1 676188 R 570508 CDS YP_002301269.1 210134830 7009770 complement(676565..677914) 1 NC_011498.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 677914 murC 7009770 murC Helicobacter pylori P12 UDP-N-acetylmuramate--L-alanine ligase YP_002301269.1 676565 R 570508 CDS YP_002301270.1 210134831 7009771 complement(677907..679034) 1 NC_011498.1 hypothetical protein 679034 7009771 HPP12_0637 Helicobacter pylori P12 hypothetical protein YP_002301270.1 677907 R 570508 CDS YP_002301271.1 210134832 7009772 679154..680233 1 NC_011498.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 680233 ispG 7009772 ispG Helicobacter pylori P12 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_002301271.1 679154 D 570508 CDS YP_002301272.1 210134833 7009773 680236..681441 1 NC_011498.1 tetrahydrodipicolinate (THDP) N-succinyltransferase 681441 dapD 7009773 dapD Helicobacter pylori P12 tetrahydrodipicolinate (THDP) N-succinyltransferase YP_002301272.1 680236 D 570508 CDS YP_002301273.1 210134834 7009774 681453..682511 1 NC_011498.1 cysteine-rich protein F 682511 hcpF 7009774 hcpF Helicobacter pylori P12 cysteine-rich protein F YP_002301273.1 681453 D 570508 CDS YP_002301274.1 210134835 7009775 682744..684792 1 NC_011498.1 hypothetical protein 684792 7009775 HPP12_0641 Helicobacter pylori P12 hypothetical protein YP_002301274.1 682744 D 570508 CDS YP_002301275.1 210134836 7009776 complement(684837..685421) 1 NC_011498.1 modulator of drug activity B 685421 7009776 HPP12_0642 Helicobacter pylori P12 modulator of drug activity B YP_002301275.1 684837 R 570508 CDS YP_002301276.1 210134837 7009777 685582..686736 1 NC_011498.1 quinone-reactive Ni/Fe hydrogenase HydA 686736 hydA 7009777 hydA Helicobacter pylori P12 quinone-reactive Ni/Fe hydrogenase HydA YP_002301276.1 685582 D 570508 CDS YP_002301277.1 210134838 7009778 686746..688482 1 NC_011498.1 quinone-reactive Ni/Fe hydrogenase HydB 688482 hydB 7009778 hydB Helicobacter pylori P12 quinone-reactive Ni/Fe hydrogenase HydB YP_002301277.1 686746 D 570508 CDS YP_002301278.1 210134839 7009779 688495..689169 1 NC_011498.1 quinone-reactive Ni/Fe hydrogenase HydC 689169 hydC 7009779 hydC Helicobacter pylori P12 quinone-reactive Ni/Fe hydrogenase HydC YP_002301278.1 688495 D 570508 CDS YP_002301279.1 210134840 7009780 689166..689702 1 NC_011498.1 quinone-reactive Ni/fe hydrogenase HydD 689702 hydD 7009780 hydD Helicobacter pylori P12 quinone-reactive Ni/fe hydrogenase HydD YP_002301279.1 689166 D 570508 CDS YP_002301280.1 210134841 7009781 689704..691242 1 NC_011498.1 hypothetical protein 691242 7009781 HPP12_0647 Helicobacter pylori P12 hypothetical protein YP_002301280.1 689704 D 570508 CDS YP_002301281.1 210134842 7009782 complement(691247..691660) 1 NC_011498.1 hypothetical protein 691660 7009782 HPP12_0648 Helicobacter pylori P12 hypothetical protein YP_002301281.1 691247 R 570508 CDS YP_002301282.1 210134843 7009783 complement(691797..692249) 1 NC_011498.1 hypothetical protein 692249 7009783 HPP12_0649 Helicobacter pylori P12 hypothetical protein YP_002301282.1 691797 R 570508 CDS YP_002301283.1 210134844 7009784 692433..693353 1 NC_011498.1 outer membrane protein HopH 693353 hopH 7009784 hopH Helicobacter pylori P12 outer membrane protein HopH YP_002301283.1 692433 D 570508 CDS YP_002301284.1 210134845 7009785 complement(693420..694106) 1 NC_011498.1 trans-regulatory protein ExsB 694106 exsB 7009785 exsB Helicobacter pylori P12 trans-regulatory protein ExsB YP_002301284.1 693420 R 570508 CDS YP_002301285.1 210134846 7009786 694169..695377 1 NC_011498.1 poly(A) polymerase 695377 7009786 HPP12_0652 Helicobacter pylori P12 poly(A) polymerase YP_002301285.1 694169 D 570508 CDS YP_002301286.1 210134847 7009787 695391..695894 1 NC_011498.1 hypothetical protein 695894 7009787 HPP12_0653 Helicobacter pylori P12 hypothetical protein YP_002301286.1 695391 D 570508 CDS YP_002301287.1 210134848 7009788 695911..696753 1 NC_011498.1 3-hydroxyacid dehydrogenase 696753 7009788 HPP12_0654 Helicobacter pylori P12 3-hydroxyacid dehydrogenase YP_002301287.1 695911 D 570508 CDS YP_002301288.1 210134849 7009789 696772..697425 1 NC_011498.1 NAD(P)H-flavin oxidoreductase 697425 7009789 HPP12_0655 Helicobacter pylori P12 NAD(P)H-flavin oxidoreductase YP_002301288.1 696772 D 570508 CDS YP_002301289.1 210134850 7009790 697590..698909 1 NC_011498.1 charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 698909 gltX 7009790 gltX Helicobacter pylori P12 glutamylglutaminyl-tRNA synthetase YP_002301289.1 697590 D 570508 CDS YP_002301290.1 210134851 7009791 698906..699199 1 NC_011498.1 integral membrane protein 699199 7009791 HPP12_0657 Helicobacter pylori P12 integral membrane protein YP_002301290.1 698906 D 570508 CDS YP_002301291.1 210134852 7009792 699208..700890 1 NC_011498.1 soluble lytic murein transglycosylase 700890 7009792 HPP12_0658 Helicobacter pylori P12 soluble lytic murein transglycosylase YP_002301291.1 699208 D 570508 CDS YP_002301292.1 210134853 7009793 700887..701708 1 NC_011498.1 UDP-glucose pyrophosphorylase 701708 galU 7009793 galU Helicobacter pylori P12 UDP-glucose pyrophosphorylase YP_002301292.1 700887 D 570508 CDS YP_002301293.1 210134854 7009794 701720..702127 1 NC_011498.1 hypothetical protein 702127 7009794 HPP12_0660 Helicobacter pylori P12 hypothetical protein YP_002301293.1 701720 D 570508 CDS YP_002301294.1 210134855 7009795 702130..703398 1 NC_011498.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 703398 7009795 HPP12_0661 Helicobacter pylori P12 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_002301294.1 702130 D 570508 CDS YP_002301295.1 210134856 7009796 703456..704862 1 NC_011498.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 704862 aspA 7009796 aspA Helicobacter pylori P12 aspartate ammonia-lyase YP_002301295.1 703456 D 570508 CDS YP_002301296.1 210134857 7009797 704868..705497 1 NC_011498.1 hypothetical protein 705497 7009797 HPP12_0663 Helicobacter pylori P12 hypothetical protein YP_002301296.1 704868 D 570508 CDS YP_002301297.1 210134858 7009798 complement(705506..706891) 1 NC_011498.1 alpha1,3-fucosyltransferase 706891 fucT 7009798 fucT Helicobacter pylori P12 alpha1,3-fucosyltransferase YP_002301297.1 705506 R 570508 CDS YP_002301298.1 210134859 7009799 complement(706931..707554) 1 NC_011498.1 phosphoserine phosphatase 707554 serB 7009799 serB Helicobacter pylori P12 phosphoserine phosphatase YP_002301298.1 706931 R 570508 CDS YP_002301299.1 210134860 7009800 complement(707570..708073) 1 NC_011498.1 nonheme iron-containing ferritin 708073 pfr 7009800 pfr Helicobacter pylori P12 nonheme iron-containing ferritin YP_002301299.1 707570 R 570508 CDS YP_002301300.1 210134861 7009801 708375..709457 1 NC_011498.1 hypothetical protein 709457 7009801 HPP12_0667 Helicobacter pylori P12 hypothetical protein YP_002301300.1 708375 D 570508 CDS YP_002301301.1 210134862 7009802 709540..712281 1 NC_011498.1 protective surface antigen D15 712281 7009802 HPP12_0668 Helicobacter pylori P12 protective surface antigen D15 YP_002301301.1 709540 D 570508 CDS YP_002301302.1 210134863 7009803 712283..713344 1 NC_011498.1 hypothetical protein 713344 7009803 HPP12_0669 Helicobacter pylori P12 hypothetical protein YP_002301302.1 712283 D 570508 CDS YP_002301303.1 210134864 7009804 713350..714651 1 NC_011498.1 processing zinc-metalloprotease 714651 7009804 HPP12_0670 Helicobacter pylori P12 processing zinc-metalloprotease YP_002301303.1 713350 D 570508 CDS YP_002301304.1 210134865 7009805 714651..716075 1 NC_011498.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 716075 gatB 7009805 gatB Helicobacter pylori P12 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_002301304.1 714651 D 570508 CDS YP_002301305.1 210134866 7009806 716075..717319 1 NC_011498.1 hypothetical protein 717319 7009806 HPP12_0672 Helicobacter pylori P12 hypothetical protein YP_002301305.1 716075 D 570508 CDS YP_002301306.1 210134867 7009807 717330..718340 1 NC_011498.1 hypothetical protein 718340 7009807 HPP12_0673 Helicobacter pylori P12 hypothetical protein YP_002301306.1 717330 D 570508 CDS YP_002301307.1 210134868 7009808 718207..718773 1 NC_011498.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 718773 rnhA 7009808 rnhA Helicobacter pylori P12 ribonuclease H YP_002301307.1 718207 D 570508 CDS YP_002301308.1 210134869 7009809 718785..719504 1 NC_011498.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 719504 rnc 7009809 rnc Helicobacter pylori P12 ribonuclease III YP_002301308.1 718785 D 570508 CDS YP_002301309.1 210134870 7009810 719501..720598 1 NC_011498.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 720598 aroC 7009810 aroC Helicobacter pylori P12 chorismate synthase YP_002301309.1 719501 D 570508 CDS YP_002301310.1 210134871 7009811 720635..721150 1 NC_011498.1 hypothetical protein 721150 7009811 HPP12_0677 Helicobacter pylori P12 hypothetical protein YP_002301310.1 720635 D 570508 CDS YP_002301311.1 210134872 7009812 721150..722523 1 NC_011498.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 722523 hemN-1 7009812 hemN-1 Helicobacter pylori P12 coproporphyrinogen III oxidase YP_002301311.1 721150 D 570508 CDS YP_002301312.1 210134873 7009813 722520..723821 1 NC_011498.1 anaerobic glycerol-3-phosphate dehydrogenase 723821 glpC 7009813 glpC Helicobacter pylori P12 anaerobic glycerol-3-phosphate dehydrogenase YP_002301312.1 722520 D 570508 CDS YP_002301313.1 210134874 7009814 723896..725884 1 NC_011498.1 type II R-M system protein 725884 7009814 HPP12_0680 Helicobacter pylori P12 type II R-M system protein YP_002301313.1 723896 D 570508 CDS YP_002301314.1 210134875 7009815 725865..726584 1 NC_011498.1 type II R-M system protein 726584 7009815 HPP12_0681 Helicobacter pylori P12 type II R-M system protein YP_002301314.1 725865 D 570508 CDS YP_002301315.1 210134876 7009816 726574..728628 1 NC_011498.1 type II R-M system protein 728628 7009816 HPP12_0682 Helicobacter pylori P12 type II R-M system protein YP_002301315.1 726574 D 570508 CDS YP_002301316.1 210134877 7009817 728625..729974 1 NC_011498.1 hypothetical protein 729974 7009817 HPP12_0683 Helicobacter pylori P12 hypothetical protein YP_002301316.1 728625 D 570508 CDS YP_002301317.1 210134878 7009818 730096..730908 1 NC_011498.1 outer membrane protein HorF 730908 horF 7009818 horF Helicobacter pylori P12 outer membrane protein HorF YP_002301317.1 730096 D 570508 CDS YP_002301318.1 210134879 7009819 731067..732239 1 NC_011498.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 732239 aspB 7009819 aspB Helicobacter pylori P12 aspartate aminotransferase YP_002301318.1 731067 D 570508 CDS YP_002301319.1 210134880 7009820 732395..732673 1 NC_011498.1 hypothetical protein 732673 7009820 HPP12_0686 Helicobacter pylori P12 hypothetical protein YP_002301319.1 732395 D 570508 CDS YP_002301320.1 210134881 7009821 732674..733744 1 NC_011498.1 integrase-recombinase protein 733744 7009821 HPP12_0687 Helicobacter pylori P12 integrase-recombinase protein YP_002301320.1 732674 D 570508 CDS YP_002301321.1 210134882 7009822 complement(733806..734312) 1 NC_011498.1 methylated-DNA-protein-cysteine methyltransferase 734312 ogt 7009822 ogt Helicobacter pylori P12 methylated-DNA-protein-cysteine methyltransferase YP_002301321.1 733806 R 570508 CDS YP_002301322.1 210134883 7009823 complement(734316..735083) 1 NC_011498.1 integral membrane protein 735083 7009823 HPP12_0689 Helicobacter pylori P12 integral membrane protein YP_002301322.1 734316 R 570508 CDS YP_002301323.1 210134884 7009824 complement(735197..736144) 1 NC_011498.1 lipopolysaccharide biosynthesis protein WbpB 736144 wbpB 7009824 wbpB Helicobacter pylori P12 lipopolysaccharide biosynthesis protein WbpB YP_002301323.1 735197 R 570508 CDS YP_002301324.1 210134885 7009825 complement(736206..738572) 1 NC_011498.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 738572 nrdA 7009825 nrdA Helicobacter pylori P12 ribonucleotide-diphosphate reductase subunit alpha YP_002301324.1 736206 R 570508 CDS YP_002301325.1 210134886 7009826 complement(738737..739219) 1 NC_011498.1 hypothetical protein 739219 7009826 HPP12_0692 Helicobacter pylori P12 hypothetical protein YP_002301325.1 738737 R 570508 CDS YP_002301326.1 210134887 7009827 complement(739243..739578) 1 NC_011498.1 hypothetical protein 739578 7009827 HPP12_0693 Helicobacter pylori P12 hypothetical protein YP_002301326.1 739243 R 570508 CDS YP_002301327.1 210134888 7009828 complement(739901..740404) 1 NC_011498.1 hypothetical protein 740404 7009828 HPP12_0694 Helicobacter pylori P12 hypothetical protein YP_002301327.1 739901 R 570508 CDS YP_002301328.1 210134889 7009829 complement(740444..740773) 1 NC_011498.1 hypothetical protein 740773 7009829 HPP12_0695 Helicobacter pylori P12 hypothetical protein YP_002301328.1 740444 R 570508 CDS YP_002301329.1 210134890 7009830 complement(740976..742277) 1 NC_011498.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 742277 glmU 7009830 glmU Helicobacter pylori P12 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_002301329.1 740976 R 570508 CDS YP_002301330.1 210134891 7009831 742323..743105 1 NC_011498.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 743105 fliP 7009831 fliP Helicobacter pylori P12 flagellar biosynthesis protein FliP YP_002301330.1 742323 D 570508 CDS YP_002301331.1 210134892 7009832 complement(743142..745445) 1 NC_011498.1 iron(III) dicitrate transport protein 745445 fecA-1 7009832 fecA-1 Helicobacter pylori P12 iron(III) dicitrate transport protein YP_002301331.1 743142 R 570508 CDS YP_002301332.1 210134893 7009833 complement(745698..747626) 1 NC_011498.1 iron(II) transport protein 747626 feoB 7009833 feoB Helicobacter pylori P12 iron(II) transport protein YP_002301332.1 745698 R 570508 CDS YP_002301333.1 210134894 7009834 747764..748576 1 NC_011498.1 hypothetical protein 748576 7009834 HPP12_0700 Helicobacter pylori P12 hypothetical protein YP_002301333.1 747764 D 570508 CDS YP_002301334.1 210134895 7009835 748858..750033 1 NC_011498.1 acetyl coenzyme A acetyltransferase 750033 7009835 HPP12_0701 Helicobacter pylori P12 acetyl coenzyme A acetyltransferase YP_002301334.1 748858 D 570508 CDS YP_002301335.1 210134896 7009836 750044..750742 1 NC_011498.1 succinyl-coa-transferase subunit A 750742 scoA 7009836 scoA Helicobacter pylori P12 succinyl-coa-transferase subunit A YP_002301335.1 750044 D 570508 CDS YP_002301336.1 210134897 7009837 750739..751362 1 NC_011498.1 succinyl-coa-transferase subunit B 751362 scoB 7009837 scoB Helicobacter pylori P12 succinyl-coa-transferase subunit B YP_002301336.1 750739 D 570508 CDS YP_002301337.1 210134898 7009838 751382..752746 1 NC_011498.1 short-chain fatty acids transporter 752746 atoE 7009838 atoE Helicobacter pylori P12 short-chain fatty acids transporter YP_002301337.1 751382 D 570508 CDS YP_002301338.1 210134899 7009839 752870..753871 1 NC_011498.1 outer membrane protein 753871 7009839 HPP12_0705 Helicobacter pylori P12 outer membrane protein YP_002301338.1 752870 D 570508 CDS YP_002301339.1 210134900 7009841 756270..758567 1 NC_011498.1 N-methylhydantoinase B 758567 7009841 HPP12_0707 Helicobacter pylori P12 N-methylhydantoinase B YP_002301339.1 756270 D 570508 CDS YP_002301340.1 210134901 7009842 758584..759084 1 NC_011498.1 acetone carboxylase gamma subunit 759084 7009842 HPP12_0708 Helicobacter pylori P12 acetone carboxylase gamma subunit YP_002301340.1 758584 D 570508 CDS YP_002301341.1 210134902 7009843 759419..760447 1 NC_011498.1 hypothetical protein 760447 7009843 HPP12_0709 Helicobacter pylori P12 hypothetical protein YP_002301341.1 759419 D 570508 CDS YP_002301342.1 210134903 7009844 760440..760826 1 NC_011498.1 diacylglycerol kinase 760826 dgkA 7009844 dgkA Helicobacter pylori P12 diacylglycerol kinase YP_002301342.1 760440 D 570508 CDS YP_002301343.1 210134904 7009845 760846..763326 1 NC_011498.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 763326 gyrA 7009845 gyrA Helicobacter pylori P12 DNA gyrase subunit A YP_002301343.1 760846 D 570508 CDS YP_002301344.1 210134905 7009846 763326..763799 1 NC_011498.1 hypothetical protein 763799 7009846 HPP12_0712 Helicobacter pylori P12 hypothetical protein YP_002301344.1 763326 D 570508 CDS YP_002301345.1 210134906 7009847 763796..764941 1 NC_011498.1 transcriptional activator of flagella proteins 764941 7009847 HPP12_0713 Helicobacter pylori P12 transcriptional activator of flagella proteins YP_002301345.1 763796 D 570508 CDS YP_002301346.1 210134907 7009848 765015..765323 1 NC_011498.1 hypothetical protein 765323 7009848 HPP12_0714 Helicobacter pylori P12 hypothetical protein YP_002301346.1 765015 D 570508 CDS YP_002301347.1 210134908 7009849 765290..765598 1 NC_011498.1 hypothetical protein 765598 7009849 HPP12_0715 Helicobacter pylori P12 hypothetical protein YP_002301347.1 765290 D 570508 CDS YP_002301348.1 210134909 7009850 complement(765847..768672) 1 NC_011498.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 768672 uvrA 7009850 uvrA Helicobacter pylori P12 excinuclease ABC subunit A YP_002301348.1 765847 R 570508 CDS YP_002301349.1 210134910 7009851 768837..769658 1 NC_011498.1 outer membrane protein HopE 769658 hopE 7009851 hopE Helicobacter pylori P12 outer membrane protein HopE YP_002301349.1 768837 D 570508 CDS YP_002301350.1 210134911 7009852 769839..770765 1 NC_011498.1 S-adenosyl-methyltransferase MraW 770765 mraW 7009852 mraW Helicobacter pylori P12 S-adenosyl-methyltransferase MraW YP_002301350.1 769839 D 570508 CDS YP_002301351.1 210134912 7009853 770786..771130 1 NC_011498.1 hypothetical protein 771130 7009853 HPP12_0719 Helicobacter pylori P12 hypothetical protein YP_002301351.1 770786 D 570508 CDS YP_002301352.1 210134913 7009854 771329..772231 1 NC_011498.1 hypothetical protein 772231 7009854 HPP12_0720 Helicobacter pylori P12 hypothetical protein YP_002301352.1 771329 D 570508 CDS YP_002301353.1 210134914 7009855 772456..774465 1 NC_011498.1 outer membrane protein HomB 774465 homB 7009855 homB Helicobacter pylori P12 outer membrane protein HomB YP_002301353.1 772456 D 570508 CDS YP_002301354.1 210134915 7009856 774653..775873 1 NC_011498.1 hypothetical protein 775873 7009856 HPP12_0722 Helicobacter pylori P12 hypothetical protein YP_002301354.1 774653 D 570508 CDS YP_002301355.1 210134916 7009857 complement(775986..777230) 1 NC_011498.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 777230 rpoN 7009857 rpoN Helicobacter pylori P12 RNA polymerase factor sigma-54 YP_002301355.1 775986 R 570508 CDS YP_002301356.1 210134917 7009858 complement(777233..777955) 1 NC_011498.1 ABC transporter ATP-binding protein 777955 7009858 HPP12_0724 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002301356.1 777233 R 570508 CDS YP_002301357.1 210134918 7009859 complement(777968..778369) 1 NC_011498.1 hypothetical protein 778369 7009859 HPP12_0725 Helicobacter pylori P12 hypothetical protein YP_002301357.1 777968 R 570508 CDS YP_002301358.1 210134919 7009860 complement(778366..780096) 1 NC_011498.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 780096 dnaX 7009860 dnaX Helicobacter pylori P12 DNA polymerase III subunits gamma and tau YP_002301358.1 778366 R 570508 CDS YP_002301359.1 210134920 7009861 complement(780164..780796) 1 NC_011498.1 integral membrane protein 780796 7009861 HPP12_0727 Helicobacter pylori P12 integral membrane protein YP_002301359.1 780164 R 570508 CDS YP_002301360.1 210134921 7009862 781060..781482 1 NC_011498.1 hypothetical protein 781482 7009862 HPP12_0728 Helicobacter pylori P12 hypothetical protein YP_002301360.1 781060 D 570508 CDS YP_002301361.1 210134922 7009863 781511..781972 1 NC_011498.1 hypothetical protein 781972 7009863 HPP12_0729 Helicobacter pylori P12 hypothetical protein YP_002301361.1 781511 D 570508 CDS YP_002301362.1 210134923 7009864 782345..784216 1 NC_011498.1 outer membrane protein SabB/HopO 784216 sabB 7009864 sabB Helicobacter pylori P12 outer membrane protein SabB/HopO YP_002301362.1 782345 D 570508 CDS YP_002301363.1 210134924 7009865 complement(784356..785354) 1 NC_011498.1 L-asparaginase type II 785354 ansB 7009865 ansB Helicobacter pylori P12 L-asparaginase type II YP_002301363.1 784356 R 570508 CDS YP_002301364.1 210134925 7009866 785483..786814 1 NC_011498.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 786814 dcuA 7009866 dcuA Helicobacter pylori P12 anaerobic C4-dicarboxylate transporter YP_002301364.1 785483 D 570508 CDS YP_002301365.1 210134926 7009867 complement(786888..788759) 1 NC_011498.1 outer membrane protein SabB/HopO 788759 sabB_2 7009867 sabB_2 Helicobacter pylori P12 outer membrane protein SabB/HopO YP_002301365.1 786888 R 570508 CDS YP_002301366.1 210134927 7009868 complement(789027..789944) 1 NC_011498.1 outer membrane protein 789944 7009868 HPP12_0734 Helicobacter pylori P12 outer membrane protein YP_002301366.1 789027 R 570508 CDS YP_002301367.1 210134928 7009869 complement(789914..790900) 1 NC_011498.1 transcriptional regulator 790900 7009869 HPP12_0735 Helicobacter pylori P12 transcriptional regulator YP_002301367.1 789914 R 570508 CDS YP_002301368.1 210134929 7009870 complement(790992..792008) 1 NC_011498.1 tRNA(Ile)-lysidine synthetase 792008 7009870 HPP12_0736 Helicobacter pylori P12 tRNA(Ile)-lysidine synthetase YP_002301368.1 790992 R 570508 CDS YP_002301369.1 210134930 7009871 complement(792044..792823) 1 NC_011498.1 ATP/GTP binding protein 792823 7009871 HPP12_0737 Helicobacter pylori P12 ATP/GTP binding protein YP_002301369.1 792044 R 570508 CDS YP_002301370.1 210134931 7009872 complement(792787..793110) 1 NC_011498.1 ATP/GTP binding protein 793110 7009872 HPP12_0738 Helicobacter pylori P12 ATP/GTP binding protein YP_002301370.1 792787 R 570508 CDS YP_002301371.1 210134932 7009873 complement(793119..793424) 1 NC_011498.1 hypothetical protein 793424 7009873 HPP12_0739 Helicobacter pylori P12 hypothetical protein YP_002301371.1 793119 R 570508 CDS YP_002301372.1 210134933 7009874 complement(793538..795229) 1 NC_011498.1 ATP/GTP binding protein 795229 7009874 HPP12_0740 Helicobacter pylori P12 ATP/GTP binding protein YP_002301372.1 793538 R 570508 CDS YP_002301373.1 210134934 7009875 complement(795226..796323) 1 NC_011498.1 hypothetical protein 796323 7009875 HPP12_0741 Helicobacter pylori P12 hypothetical protein YP_002301373.1 795226 R 570508 CDS YP_002301374.1 210134935 7009876 complement(796341..796967) 1 NC_011498.1 hypothetical protein 796967 7009876 HPP12_0742 Helicobacter pylori P12 hypothetical protein YP_002301374.1 796341 R 570508 CDS YP_002301375.1 210134936 7009877 complement(797187..798506) 1 NC_011498.1 2-methylthioadenine synthetase 798506 7009877 HPP12_0743 Helicobacter pylori P12 2-methylthioadenine synthetase YP_002301375.1 797187 R 570508 CDS YP_002301376.1 210134937 7009878 complement(798508..798969) 1 NC_011498.1 xanthine-guanine phosphoribosyl transferase 798969 gpt 7009878 gpt Helicobacter pylori P12 xanthine-guanine phosphoribosyl transferase YP_002301376.1 798508 R 570508 CDS YP_002301377.1 210134938 7009879 complement(798978..800087) 1 NC_011498.1 phosphoserine aminotransferase 800087 7009879 HPP12_0745 Helicobacter pylori P12 phosphoserine aminotransferase YP_002301377.1 798978 R 570508 CDS YP_002301378.1 210134939 7009880 800236..800712 1 NC_011498.1 phosphatidylglycerophosphatase A 800712 pgpA 7009880 pgpA Helicobacter pylori P12 phosphatidylglycerophosphatase A YP_002301378.1 800236 D 570508 CDS YP_002301379.1 210134940 7009881 800789..801832 1 NC_011498.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 801832 ddl 7009881 ddl Helicobacter pylori P12 D-alanyl-alanine synthetase A YP_002301379.1 800789 D 570508 CDS YP_002301380.1 210134941 7009882 801832..802557 1 NC_011498.1 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 802557 7009882 HPP12_0748 Helicobacter pylori P12 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase YP_002301380.1 801832 D 570508 CDS YP_002301381.1 210134942 7009883 802544..804025 1 NC_011498.1 UDP-murnac-pentapeptide presynthetase 804025 murF 7009883 murF Helicobacter pylori P12 UDP-murnac-pentapeptide presynthetase YP_002301381.1 802544 D 570508 CDS YP_002301382.1 210134943 7009884 804035..804520 1 NC_011498.1 histidine triad (HIT) family protein 804520 7009884 HPP12_0750 Helicobacter pylori P12 histidine triad (HIT) family protein YP_002301382.1 804035 D 570508 CDS YP_002301383.1 210134944 7009885 804585..805541 1 NC_011498.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 805541 prsA 7009885 prsA Helicobacter pylori P12 ribose-phosphate pyrophosphokinase YP_002301383.1 804585 D 570508 CDS YP_002301384.1 210134945 7009887 complement(805602..806723) 1 NC_011498.1 rod shape-determining protein 806723 rodA 7009887 rodA Helicobacter pylori P12 rod shape-determining protein YP_002301384.1 805602 R 570508 CDS YP_002301385.1 210134946 7009888 complement(806770..807309) 1 NC_011498.1 hypothetical protein 807309 7009888 HPP12_0753 Helicobacter pylori P12 hypothetical protein YP_002301385.1 806770 R 570508 CDS YP_002301386.1 210134947 7009889 complement(807536..807988) 1 NC_011498.1 hypothetical protein 807988 7009889 HPP12_0754 Helicobacter pylori P12 hypothetical protein YP_002301386.1 807536 R 570508 CDS YP_002301387.1 210134948 7009890 808124..809107 1 NC_011498.1 pseudouridine synthase D 809107 7009890 HPP12_0755 Helicobacter pylori P12 pseudouridine synthase D YP_002301387.1 808124 D 570508 CDS YP_002301388.1 210134949 7009891 809058..810317 1 NC_011498.1 fibronectin domain-containing lipoprotein 810317 7009891 HPP12_0756 Helicobacter pylori P12 fibronectin domain-containing lipoprotein YP_002301388.1 809058 D 570508 CDS YP_002301389.1 210134950 7009892 810328..811509 1 NC_011498.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 811509 trmB 7009892 trmB Helicobacter pylori P12 tRNA (guanine-N(7)-)-methyltransferase YP_002301389.1 810328 D 570508 CDS YP_002301390.1 210134951 7009893 811506..812177 1 NC_011498.1 ABC transporter ATP-binding protein; cell division protein FtsE 812177 ftsE 7009893 ftsE Helicobacter pylori P12 cell division protein FtsE YP_002301390.1 811506 D 570508 CDS YP_002301391.1 210134952 7009894 812164..812970 1 NC_011498.1 cell division protein FtsX 812970 ftsX 7009894 ftsX Helicobacter pylori P12 cell division protein FtsX YP_002301391.1 812164 D 570508 CDS YP_002301392.1 210134953 7009895 812963..814165 1 NC_011498.1 hypothetical protein 814165 7009895 HPP12_0760 Helicobacter pylori P12 hypothetical protein YP_002301392.1 812963 D 570508 CDS YP_002301393.1 210134954 7009896 814258..814617 1 NC_011498.1 possibly involved in flagella export; flagellar protein FlaG 814617 flaG-2 7009896 flaG-2 Helicobacter pylori P12 flagellar protein FlaG YP_002301393.1 814258 D 570508 CDS YP_002301394.1 210134955 7009897 814657..816714 1 NC_011498.1 involved in flagellin assembly; flagellar capping protein 816714 fliD 7009897 fliD Helicobacter pylori P12 flagellar capping protein YP_002301394.1 814657 D 570508 CDS YP_002301395.1 210134956 7009898 816756..817136 1 NC_011498.1 flagellin specific chaperone; flagellar protein FliS 817136 fliS 7009898 fliS Helicobacter pylori P12 flagellar protein FliS YP_002301395.1 816756 D 570508 CDS YP_002301396.1 210134957 7009899 817123..817362 1 NC_011498.1 hypothetical protein 817362 7009899 HPP12_0764 Helicobacter pylori P12 hypothetical protein YP_002301396.1 817123 D 570508 CDS YP_002301397.1 210134958 7009900 817416..818075 1 NC_011498.1 molybdopterin biosynthesis protein 818075 moeB 7009900 moeB Helicobacter pylori P12 molybdopterin biosynthesis protein YP_002301397.1 817416 D 570508 CDS YP_002301398.1 210134959 7009901 818101..818244 1 NC_011498.1 hypothetical protein 818244 7009901 HPP12_0766 Helicobacter pylori P12 hypothetical protein YP_002301398.1 818101 D 570508 CDS YP_002301399.1 210134960 7009902 818248..819126 1 NC_011498.1 carbon-nitrogen hydrolase 819126 7009902 HPP12_0767 Helicobacter pylori P12 carbon-nitrogen hydrolase YP_002301399.1 818248 D 570508 CDS YP_002301400.1 210134961 7009903 819259..820572 1 NC_011498.1 permease/na-h antiporter 820572 7009903 HPP12_0768 Helicobacter pylori P12 permease/na-h antiporter YP_002301400.1 819259 D 570508 CDS YP_002301401.1 210134962 7009904 820635..821888 1 NC_011498.1 DNA-damage induced multidrug efflux protein 821888 7009904 HPP12_0769 Helicobacter pylori P12 DNA-damage induced multidrug efflux protein YP_002301401.1 820635 D 570508 CDS YP_002301402.1 210134963 7009905 complement(821889..823478) 1 NC_011498.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 823478 7009905 HPP12_0770 Helicobacter pylori P12 phosphodiesterase YP_002301402.1 821889 R 570508 CDS YP_002301403.1 210134964 7009906 complement(823378..823980) 1 NC_011498.1 hypothetical protein 823980 7009906 HPP12_0771 Helicobacter pylori P12 hypothetical protein YP_002301403.1 823378 R 570508 CDS YP_002301404.1 210134965 7009907 824144..824701 1 NC_011498.1 hypothetical protein 824701 7009907 HPP12_0772 Helicobacter pylori P12 hypothetical protein YP_002301404.1 824144 D 570508 CDS YP_002301405.1 210134966 7009908 824707..825588 1 NC_011498.1 signal recognition particle receptor; cell division protein FtsY 825588 ftsY 7009908 ftsY Helicobacter pylori P12 cell division protein FtsY YP_002301405.1 824707 D 570508 CDS YP_002301406.1 210134967 7009909 complement(825655..826269) 1 NC_011498.1 hypothetical protein 826269 7009909 HPP12_0774 Helicobacter pylori P12 hypothetical protein YP_002301406.1 825655 R 570508 CDS YP_002301407.1 210134968 7009910 complement(826049..826546) 1 NC_011498.1 hypothetical protein 826546 7009910 HPP12_0775 Helicobacter pylori P12 hypothetical protein YP_002301407.1 826049 R 570508 CDS YP_002301408.1 210134969 7009911 complement(826543..826695) 1 NC_011498.1 hypothetical protein 826695 7009911 HPP12_0776 Helicobacter pylori P12 hypothetical protein YP_002301408.1 826543 R 570508 CDS YP_002301409.1 210134970 7009912 complement(826795..827760) 1 NC_011498.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 827760 moaA 7009912 moaA Helicobacter pylori P12 molybdenum cofactor biosynthesis protein A YP_002301409.1 826795 R 570508 CDS YP_002301410.1 210134971 7009913 827847..828452 1 NC_011498.1 MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein A 828452 7009913 HPP12_0778 Helicobacter pylori P12 molybdopterin-guanine dinucleotide biosynthesis protein A YP_002301410.1 827847 D 570508 CDS YP_002301411.1 210134972 7009914 828445..829521 1 NC_011498.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 829521 flhB 7009914 flhB Helicobacter pylori P12 flagellar biosynthesis protein FlhB YP_002301411.1 828445 D 570508 CDS YP_002301412.1 210134973 7009915 complement(829616..830353) 1 NC_011498.1 hypothetical protein 830353 7009915 HPP12_0780 Helicobacter pylori P12 hypothetical protein YP_002301412.1 829616 R 570508 CDS YP_002301413.1 210134974 7009916 complement(830372..831703) 1 NC_011498.1 N-acetylmuramoyl-L-alanine amidase 831703 amiA 7009916 amiA Helicobacter pylori P12 N-acetylmuramoyl-L-alanine amidase YP_002301413.1 830372 R 570508 CDS YP_002301414.1 210134975 7009917 complement(831710..832801) 1 NC_011498.1 flavin-containing oxidoreductase 832801 7009917 HPP12_0782 Helicobacter pylori P12 flavin-containing oxidoreductase YP_002301414.1 831710 R 570508 CDS YP_002301415.1 210134976 7009918 complement(832818..834026) 1 NC_011498.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 834026 tyrS 7009918 tyrS Helicobacter pylori P12 tyrosyl-tRNA synthetase YP_002301415.1 832818 R 570508 CDS YP_002301416.1 210134977 7009919 complement(834050..836377) 1 NC_011498.1 penta-phosphate guanosine-3'-pyrophosphohydrolase 836377 spoT 7009919 spoT Helicobacter pylori P12 penta-phosphate guanosine-3'-pyrophosphohydrolase YP_002301416.1 834050 R 570508 CDS YP_002301417.1 210134978 7009920 complement(836364..836588) 1 NC_011498.1 Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 836588 7009920 HPP12_0785 Helicobacter pylori P12 DNA-directed RNA polymerase subunit omega YP_002301417.1 836364 R 570508 CDS YP_002301418.1 210134979 7009921 complement(836630..837352) 1 NC_011498.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 837352 pyrH 7009921 pyrH Helicobacter pylori P12 uridylate kinase YP_002301418.1 836630 R 570508 CDS YP_002301419.1 210134980 7009922 complement(837455..838138) 1 NC_011498.1 hypothetical protein 838138 7009922 HPP12_0787 Helicobacter pylori P12 hypothetical protein YP_002301419.1 837455 R 570508 CDS YP_002301420.1 210134981 7009923 838269..840827 1 NC_011498.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 840827 acnB 7009923 acnB Helicobacter pylori P12 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_002301420.1 838269 D 570508 CDS YP_002301421.1 210134982 7009924 840908..841174 1 NC_011498.1 hypothetical protein 841174 7009924 HPP12_0789 Helicobacter pylori P12 hypothetical protein YP_002301421.1 840908 D 570508 CDS YP_002301422.1 210134983 7009925 841441..842730 1 NC_011498.1 hypothetical protein 842730 7009925 HPP12_0790 Helicobacter pylori P12 hypothetical protein YP_002301422.1 841441 D 570508 CDS YP_002301423.1 210134984 7009926 842824..844191 1 NC_011498.1 outermembrane protein HofE 844191 hofE 7009926 hofE Helicobacter pylori P12 outermembrane protein HofE YP_002301423.1 842824 D 570508 CDS YP_002301424.1 210134985 7009927 complement(844198..844725) 1 NC_011498.1 hypothetical protein 844725 7009927 HPP12_0792 Helicobacter pylori P12 hypothetical protein YP_002301424.1 844198 R 570508 CDS YP_002301425.1 210134986 7009928 complement(845208..845762) 1 NC_011498.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 845762 lolA 7009928 lolA Helicobacter pylori P12 outer-membrane lipoprotein carrier protein YP_002301425.1 845208 R 570508 CDS YP_002301426.1 210134987 7009929 845910..848507 1 NC_011498.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 848507 secA 7009929 secA Helicobacter pylori P12 preprotein translocase subunit SecA YP_002301426.1 845910 D 570508 CDS YP_002301427.1 210134988 7009930 848497..849729 1 NC_011498.1 lipoprotein release system transmembrane protein LolE 849729 lolE 7009930 lolE Helicobacter pylori P12 lipoprotein release system transmembrane protein LolE YP_002301427.1 848497 D 570508 CDS YP_002301428.1 210134989 7009931 850011..851510 1 NC_011498.1 outer membrane protein HofF 851510 hofF 7009931 hofF Helicobacter pylori P12 outer membrane protein HofF YP_002301428.1 850011 D 570508 CDS YP_002301429.1 210134990 7009932 complement(851843..853141) 1 NC_011498.1 type I R-M system S protein 853141 hsdS-2 7009932 hsdS-2 Helicobacter pylori P12 type I R-M system S protein YP_002301429.1 851843 R 570508 CDS YP_002301430.1 210134991 7009933 complement(853182..855242) 1 NC_011498.1 p-type transporting ATPase involved in transition metal resistance; cadmium-transporting ATPase 855242 7009933 HPP12_0798 Helicobacter pylori P12 cadmium-transporting ATPase YP_002301430.1 853182 R 570508 CDS YP_002301431.1 210134992 7009934 complement(855267..856787) 1 NC_011498.1 sigma-54 interacting protein 856787 7009934 HPP12_0799 Helicobacter pylori P12 sigma-54 interacting protein YP_002301431.1 855267 R 570508 CDS YP_002301432.1 210134993 7009935 complement(856793..857317) 1 NC_011498.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 857317 def 7009935 def Helicobacter pylori P12 peptide deformylase YP_002301432.1 856793 R 570508 CDS YP_002301433.1 210134994 7009936 complement(857322..857909) 1 NC_011498.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 857909 clpP 7009936 clpP Helicobacter pylori P12 ATP-dependent Clp protease proteolytic subunit YP_002301433.1 857322 R 570508 CDS YP_002301434.1 210134995 7009937 complement(857930..859285) 1 NC_011498.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 859285 tig 7009937 tig Helicobacter pylori P12 trigger factor YP_002301434.1 857930 R 570508 CDS YP_002301435.1 210134996 7009938 complement(859397..860233) 1 NC_011498.1 outer membrane protein HorG 860233 horG 7009938 horG Helicobacter pylori P12 outer membrane protein HorG YP_002301435.1 859397 R 570508 CDS YP_002301436.1 210134997 7009939 complement(860262..861044) 1 NC_011498.1 flagellar sheath adhesin HpaA 861044 hpaA 7009939 hpaA Helicobacter pylori P12 flagellar sheath adhesin HpaA YP_002301436.1 860262 R 570508 CDS YP_002301437.1 210134998 7009940 complement(861163..861639) 1 NC_011498.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 861639 moaC 7009940 moaC Helicobacter pylori P12 molybdenum cofactor biosynthesis protein MoaC YP_002301437.1 861163 R 570508 CDS YP_002301438.1 210134999 7009941 complement(861648..862178) 1 NC_011498.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 862178 mogA 7009941 mogA Helicobacter pylori P12 molybdenum cofactor biosynthesis protein MogA YP_002301438.1 861648 R 570508 CDS YP_002301439.1 210135000 7009942 complement(862191..862628) 1 NC_011498.1 molybdopterin converting factor subunit 2 862628 moaE 7009942 moaE Helicobacter pylori P12 molybdopterin converting factor subunit 2 YP_002301439.1 862191 R 570508 CDS YP_002301440.1 210135001 7009943 complement(862931..863509) 1 NC_011498.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 863509 ribA 7009943 ribA Helicobacter pylori P12 GTP cyclohydrolase II YP_002301440.1 862931 R 570508 CDS YP_002301441.1 210135002 7009944 complement(863599..864438) 1 NC_011498.1 hypothetical protein 864438 7009944 HPP12_0809 Helicobacter pylori P12 hypothetical protein YP_002301441.1 863599 R 570508 CDS YP_002301442.1 210135003 7009945 complement(864525..865559) 1 NC_011498.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 865559 7009945 HPP12_0810 Helicobacter pylori P12 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein YP_002301442.1 864525 R 570508 CDS YP_002301443.1 210135004 7009946 complement(865642..866478) 1 NC_011498.1 lipopolysaccharide biosynthesis protein 866478 7009946 HPP12_0811 Helicobacter pylori P12 lipopolysaccharide biosynthesis protein YP_002301443.1 865642 R 570508 CDS YP_002301444.1 210135005 7009947 866560..867180 1 NC_011498.1 metalloprotease 867180 7009947 HPP12_0812 Helicobacter pylori P12 metalloprotease YP_002301444.1 866560 D 570508 CDS YP_002301445.1 210135006 7009948 complement(867192..869570) 1 NC_011498.1 iron(III) dicitrate transport protein 869570 7009948 HPP12_0813 Helicobacter pylori P12 iron(III) dicitrate transport protein YP_002301445.1 867192 R 570508 CDS YP_002301446.1 210135007 7009949 complement(869773..870129) 1 NC_011498.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 870129 acpS 7009949 acpS Helicobacter pylori P12 4'-phosphopantetheinyl transferase YP_002301446.1 869773 R 570508 CDS YP_002301447.1 210135008 7009950 complement(870136..870687) 1 NC_011498.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 870687 fliL 7009950 fliL Helicobacter pylori P12 flagellar basal body-associated protein FliL YP_002301447.1 870136 R 570508 CDS YP_002301448.1 210135009 7009951 complement(870696..871298) 1 NC_011498.1 N-6 adenine methyltransferase 871298 7009951 HPP12_0816 Helicobacter pylori P12 N-6 adenine methyltransferase YP_002301448.1 870696 R 570508 CDS YP_002301449.1 210135010 7009952 complement(871277..871603) 1 NC_011498.1 hypothetical protein 871603 7009952 HPP12_0817 Helicobacter pylori P12 hypothetical protein YP_002301449.1 871277 R 570508 CDS YP_002301450.1 210135011 7009953 complement(871958..872962) 1 NC_011498.1 hypothetical protein 872962 7009953 HPP12_0818 Helicobacter pylori P12 hypothetical protein YP_002301450.1 871958 R 570508 CDS YP_002301451.1 210135012 7009954 873096..873713 1 NC_011498.1 hypothetical protein 873713 7009954 HPP12_0819 Helicobacter pylori P12 hypothetical protein YP_002301451.1 873096 D 570508 CDS YP_002301452.1 210135013 7009955 873714..874481 1 NC_011498.1 thiamine biosynthesis protein 874481 7009955 HPP12_0820 Helicobacter pylori P12 thiamine biosynthesis protein YP_002301452.1 873714 D 570508 CDS YP_002301453.1 210135014 7009956 874497..875270 1 NC_011498.1 With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 875270 motA 7009956 motA Helicobacter pylori P12 flagellar motor protein MotA YP_002301453.1 874497 D 570508 CDS YP_002301454.1 210135015 7009957 875273..876046 1 NC_011498.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 876046 motB 7009957 motB Helicobacter pylori P12 flagellar motor protein MotB YP_002301454.1 875273 D 570508 CDS YP_002301455.1 210135016 7009958 876043..876489 1 NC_011498.1 hypothetical protein 876489 7009958 HPP12_0823 Helicobacter pylori P12 hypothetical protein YP_002301455.1 876043 D 570508 CDS YP_002301456.1 210135017 7009959 876548..876694 1 NC_011498.1 osmoprotection protein 876694 7009959 HPP12_0824 Helicobacter pylori P12 osmoprotection protein YP_002301456.1 876548 D 570508 CDS YP_002301457.1 210135018 7009960 876936..878486 1 NC_011498.1 osmoprotection protein 878486 proWX 7009960 proWX Helicobacter pylori P12 osmoprotection protein YP_002301457.1 876936 D 570508 CDS YP_002301458.1 210135019 7009961 878490..879131 1 NC_011498.1 ATP-binding protein; osmoprotection ABC transporter 879131 proV 7009961 proV Helicobacter pylori P12 osmoprotection ABC transporter YP_002301458.1 878490 D 570508 CDS YP_002301459.1 210135020 7009962 879314..879775 1 NC_011498.1 hypothetical protein 879775 7009962 HPP12_0827 Helicobacter pylori P12 hypothetical protein YP_002301459.1 879314 D 570508 CDS YP_002301460.1 210135021 7009963 879776..881560 1 NC_011498.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 881560 uvrC 7009963 uvrC Helicobacter pylori P12 excinuclease ABC subunit C YP_002301460.1 879776 D 570508 CDS YP_002301461.1 210135022 7009964 881571..882836 1 NC_011498.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 882836 hom 7009964 hom Helicobacter pylori P12 homoserine dehydrogenase YP_002301461.1 881571 D 570508 CDS YP_002301462.1 210135023 7009965 882837..883181 1 NC_011498.1 hypothetical protein 883181 7009965 HPP12_0830 Helicobacter pylori P12 hypothetical protein YP_002301462.1 882837 D 570508 CDS YP_002301463.1 210135024 7009966 883270..883590 1 NC_011498.1 thioredoxin 883590 trxA 7009966 trxA Helicobacter pylori P12 thioredoxin YP_002301463.1 883270 D 570508 CDS YP_002301464.1 210135025 7009967 883595..884530 1 NC_011498.1 thioredoxin reductase 884530 trxB-1 7009967 trxB-1 Helicobacter pylori P12 thioredoxin reductase YP_002301464.1 883595 D 570508 CDS YP_002301465.1 210135026 7009968 884741..885562 1 NC_011498.1 beta-1,4-galactosyltransferase 885562 7009968 HPP12_0833 Helicobacter pylori P12 beta-1,4-galactosyltransferase YP_002301465.1 884741 D 570508 CDS YP_002301466.1 210135027 7009969 complement(885783..886031) 1 NC_011498.1 RNA-binding protein 886031 7009969 HPP12_0834 Helicobacter pylori P12 RNA-binding protein YP_002301466.1 885783 R 570508 CDS YP_002301467.1 210135028 7009970 complement(886354..887034) 1 NC_011498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 887034 atpB 7009970 atpB Helicobacter pylori P12 F0F1 ATP synthase subunit A YP_002301467.1 886354 R 570508 CDS YP_002301468.1 210135029 7009971 complement(887156..888601) 1 NC_011498.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 888601 guaB 7009971 guaB Helicobacter pylori P12 inosine 5'-monophosphate dehydrogenase YP_002301468.1 887156 R 570508 CDS YP_002301469.1 210135030 7009972 complement(888611..889972) 1 NC_011498.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 889972 gatA 7009972 gatA Helicobacter pylori P12 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_002301469.1 888611 R 570508 CDS YP_002301470.1 210135031 7009973 complement(890031..890621) 1 NC_011498.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 890621 coaE 7009973 coaE Helicobacter pylori P12 dephospho-CoA kinase YP_002301470.1 890031 R 570508 CDS YP_002301471.1 210135032 7009974 complement(890623..891411) 1 NC_011498.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 891411 speE 7009974 speE Helicobacter pylori P12 spermidine synthase YP_002301471.1 890623 R 570508 CDS YP_002301472.1 210135033 7009975 complement(891503..892381) 1 NC_011498.1 hypothetical protein 892381 7009975 HPP12_0840 Helicobacter pylori P12 hypothetical protein YP_002301472.1 891503 R 570508 CDS YP_002301473.1 210135034 7009976 892458..893846 1 NC_011498.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 893846 engA 7009976 engA Helicobacter pylori P12 GTP-binding protein EngA YP_002301473.1 892458 D 570508 CDS YP_002301474.1 210135035 7009977 893987..894271 1 NC_011498.1 histone-like DNA-binding protein hu 894271 7009977 HPP12_0842 Helicobacter pylori P12 histone-like DNA-binding protein hu YP_002301474.1 893987 D 570508 CDS YP_002301475.1 210135036 7009979 894873..895478 1 NC_011498.1 hypothetical protein 895478 7009979 HPP12_0843 Helicobacter pylori P12 hypothetical protein YP_002301475.1 894873 D 570508 CDS YP_002301476.1 210135037 7009980 895508..896125 1 NC_011498.1 hypothetical protein 896125 7009980 HPP12_0844 Helicobacter pylori P12 hypothetical protein YP_002301476.1 895508 D 570508 CDS YP_002301477.1 210135038 7009981 896122..897885 1 NC_011498.1 outer membrane transport protein P1 897885 ompP1 7009981 ompP1 Helicobacter pylori P12 outer membrane transport protein P1 YP_002301477.1 896122 D 570508 CDS YP_002301478.1 210135039 7009982 897889..898890 1 NC_011498.1 bifunctional UDP-glcnac C6 dehydratase / C5 epimerase 898890 7009982 HPP12_0846 Helicobacter pylori P12 bifunctional UDP-glcnac C6 dehydratase / C5 epimerase YP_002301478.1 897889 D 570508 CDS YP_002301479.1 210135040 7009983 898887..900164 1 NC_011498.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 900164 dfp 7009983 dfp Helicobacter pylori P12 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_002301479.1 898887 D 570508 CDS YP_002301480.1 210135041 7009984 900164..900901 1 NC_011498.1 hypothetical protein 900901 7009984 HPP12_0848 Helicobacter pylori P12 hypothetical protein YP_002301480.1 900164 D 570508 CDS YP_002301481.1 210135042 7009985 complement(900914..901447) 1 NC_011498.1 type I R-M system S protein 901447 hsdS-3 7009985 hsdS-3 Helicobacter pylori P12 type I R-M system S protein YP_002301481.1 900914 R 570508 CDS YP_002301482.1 210135043 7009986 complement(901440..903023) 1 NC_011498.1 type I R-M system M protein 903023 hsdM-2 7009986 hsdM-2 Helicobacter pylori P12 type I R-M system M protein YP_002301482.1 901440 R 570508 CDS YP_002301483.1 210135044 7009987 903199..903885 1 NC_011498.1 integral membrane protein 903885 7009987 HPP12_0851 Helicobacter pylori P12 integral membrane protein YP_002301483.1 903199 D 570508 CDS YP_002301484.1 210135045 7009988 complement(903909..904277) 1 NC_011498.1 hypothetical protein 904277 7009988 HPP12_0852 Helicobacter pylori P12 hypothetical protein YP_002301484.1 903909 R 570508 CDS YP_002301485.1 210135046 7009989 complement(904214..904852) 1 NC_011498.1 hypothetical protein 904852 7009989 HPP12_0853 Helicobacter pylori P12 hypothetical protein YP_002301485.1 904214 R 570508 CDS YP_002301486.1 210135047 7009990 complement(904849..906450) 1 NC_011498.1 ABC transporter ATP-binding protein 906450 7009990 HPP12_0854 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002301486.1 904849 R 570508 CDS YP_002301487.1 210135048 7009991 906619..907626 1 NC_011498.1 guanosine 5'-monophosphate oxidoreductase 907626 7009991 HPP12_0855 Helicobacter pylori P12 guanosine 5'-monophosphate oxidoreductase YP_002301487.1 906619 D 570508 CDS YP_002301488.1 210135049 7009992 complement(907623..907772) 1 NC_011498.1 hypothetical protein 907772 7009992 HPP12_0856 Helicobacter pylori P12 hypothetical protein YP_002301488.1 907623 R 570508 CDS YP_002301489.1 210135050 7009993 complement(907744..908322) 1 NC_011498.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 908322 gmhA 7009993 gmhA Helicobacter pylori P12 phosphoheptose isomerase YP_002301489.1 907744 R 570508 CDS YP_002301490.1 210135051 7009994 complement(908315..909700) 1 NC_011498.1 ADP-heptose synthase 909700 waaE 7009994 waaE Helicobacter pylori P12 ADP-heptose synthase YP_002301490.1 908315 R 570508 CDS YP_002301491.1 210135052 7009995 complement(909697..910689) 1 NC_011498.1 ADP-L-glycero-D-mannoheptose-6-epimerase 910689 7009995 HPP12_0859 Helicobacter pylori P12 ADP-L-glycero-D-mannoheptose-6-epimerase YP_002301491.1 909697 R 570508 CDS YP_002301492.1 210135053 7009996 complement(910699..911220) 1 NC_011498.1 histidinol phosphatase 911220 7009996 HPP12_0860 Helicobacter pylori P12 histidinol phosphatase YP_002301492.1 910699 R 570508 CDS YP_002301493.1 210135054 7009997 complement(911210..911950) 1 NC_011498.1 hypothetical protein 911950 7009997 HPP12_0861 Helicobacter pylori P12 hypothetical protein YP_002301493.1 911210 R 570508 CDS YP_002301494.1 210135055 7009998 complement(911941..912612) 1 NC_011498.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 912612 7009998 HPP12_0862 Helicobacter pylori P12 pantothenate kinase YP_002301494.1 911941 R 570508 CDS YP_002301495.1 210135056 7009999 complement(912617..914242) 1 NC_011498.1 hypothetical protein 914242 7009999 HPP12_0863 Helicobacter pylori P12 hypothetical protein YP_002301495.1 912617 R 570508 CDS YP_002301496.1 210135057 7010000 complement(914247..914903) 1 NC_011498.1 hypothetical protein 914903 7010000 HPP12_0864 Helicobacter pylori P12 hypothetical protein YP_002301496.1 914247 R 570508 CDS YP_002301497.1 210135058 7010001 complement(914900..915337) 1 NC_011498.1 catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 915337 dut 7010001 dut Helicobacter pylori P12 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_002301497.1 914900 R 570508 CDS YP_002301498.1 210135059 7010002 complement(915327..915821) 1 NC_011498.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 915821 greA 7010002 greA Helicobacter pylori P12 transcription elongation factor GreA YP_002301498.1 915327 R 570508 CDS YP_002301499.1 210135060 7010003 complement(915862..916944) 1 NC_011498.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase 916944 lpxB 7010003 lpxB Helicobacter pylori P12 ipid-A-disaccharide synthase YP_002301499.1 915862 R 570508 CDS YP_002301500.1 210135061 7010004 complement(916944..917405) 1 NC_011498.1 hypothetical protein 917405 7010004 HPP12_0868 Helicobacter pylori P12 hypothetical protein YP_002301500.1 916944 R 570508 CDS YP_002301501.1 210135062 7010005 complement(917412..917765) 1 NC_011498.1 plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein 917765 hypA 7010005 hypA Helicobacter pylori P12 hydrogenase nickel incorporation protein YP_002301501.1 917412 R 570508 CDS YP_002301502.1 210135063 7010006 complement(917824..919980) 1 NC_011498.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 919980 flgE 7010006 flgE Helicobacter pylori P12 flagellar hook protein FlgE YP_002301502.1 917824 R 570508 CDS YP_002301503.1 210135064 7010007 complement(920187..920921) 1 NC_011498.1 CDP-diacylglycerol pyrophosphatase 920921 cdh 7010007 cdh Helicobacter pylori P12 CDP-diacylglycerol pyrophosphatase YP_002301503.1 920187 R 570508 CDS YP_002301504.1 210135065 7010008 921273..921602 1 NC_011498.1 alkylphosphonate uptake protein 921602 phnA 7010008 phnA Helicobacter pylori P12 alkylphosphonate uptake protein YP_002301504.1 921273 D 570508 CDS YP_002301505.1 210135066 7010009 complement(921659..921874) 1 NC_011498.1 hypothetical protein 921874 7010009 HPP12_0873 Helicobacter pylori P12 hypothetical protein YP_002301505.1 921659 R 570508 CDS YP_002301506.1 210135067 7010010 complement(921959..922834) 1 NC_011498.1 hypothetical protein 922834 7010010 HPP12_0874 Helicobacter pylori P12 hypothetical protein YP_002301506.1 921959 R 570508 CDS YP_002301507.1 210135068 7010011 complement(922979..924496) 1 NC_011498.1 catalase 924496 katA 7010011 katA Helicobacter pylori P12 catalase YP_002301507.1 922979 R 570508 CDS YP_002301508.1 210135069 7010012 924819..927194 1 NC_011498.1 iron-regulated outer membrane protein 927194 frpB-1 7010012 frpB-1 Helicobacter pylori P12 iron-regulated outer membrane protein YP_002301508.1 924819 D 570508 CDS YP_002301509.1 210135070 7010013 complement(927195..927668) 1 NC_011498.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 927668 ruvC 7010013 ruvC Helicobacter pylori P12 Holliday junction resolvase YP_002301509.1 927195 R 570508 CDS YP_002301510.1 210135071 7010014 927800..928525 1 NC_011498.1 hypothetical protein 928525 7010014 HPP12_0878 Helicobacter pylori P12 hypothetical protein YP_002301510.1 927800 D 570508 CDS YP_002301511.1 210135072 7010015 complement(929714..930559) 1 NC_011498.1 hypothetical protein 930559 7010015 HPP12_0879 Helicobacter pylori P12 hypothetical protein YP_002301511.1 929714 R 570508 CDS YP_002301512.1 210135073 7010016 complement(930589..931140) 1 NC_011498.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 931140 ruvA 7010016 ruvA Helicobacter pylori P12 Holliday junction DNA helicase RuvA YP_002301512.1 930589 R 570508 CDS YP_002301513.1 210135074 7010017 complement(931166..933010) 1 NC_011498.1 hypothetical protein 933010 7010017 HPP12_0881 Helicobacter pylori P12 hypothetical protein YP_002301513.1 931166 R 570508 CDS YP_002301514.1 210135075 7010018 933103..934563 1 NC_011498.1 virulence factor MviN protein 934563 mviN 7010018 mviN Helicobacter pylori P12 virulence factor MviN protein YP_002301514.1 933103 D 570508 CDS YP_002301515.1 210135076 7010019 934564..935961 1 NC_011498.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 935961 cysS 7010019 cysS Helicobacter pylori P12 cysteinyl-tRNA synthetase YP_002301515.1 934564 D 570508 CDS YP_002301516.1 210135077 7010020 936186..940076 1 NC_011498.1 vacuolating cytotoxin VacA 940076 vacA 7010020 vacA Helicobacter pylori P12 vacuolating cytotoxin VacA YP_002301516.1 936186 D 570508 CDS YP_002301517.1 210135078 7010021 complement(940142..940909) 1 NC_011498.1 ATP-binding protein; iron(III) dicitrate ABC transporter FecE 940909 fecE 7010021 fecE Helicobacter pylori P12 iron(III) dicitrate ABC transporter FecE YP_002301517.1 940142 R 570508 CDS YP_002301518.1 210135079 7010022 complement(940909..941889) 1 NC_011498.1 permease protein; iron(III) dicitrate ABC transporter FecD 941889 fecD 7010022 fecD Helicobacter pylori P12 iron(III) dicitrate ABC transporter FecD YP_002301518.1 940909 R 570508 CDS YP_002301519.1 210135080 7010023 complement(941882..942736) 1 NC_011498.1 short-chain oxidoreductase 942736 7010023 HPP12_0887 Helicobacter pylori P12 short-chain oxidoreductase YP_002301519.1 941882 R 570508 CDS YP_002301520.1 210135081 7010024 942876..943400 1 NC_011498.1 acyl coenzyme A thioesterase 943400 7010024 HPP12_0888 Helicobacter pylori P12 acyl coenzyme A thioesterase YP_002301520.1 942876 D 570508 CDS YP_002301521.1 210135082 7010025 complement(943567..943830) 1 NC_011498.1 hypothetical protein 943830 7010025 HPP12_0889 Helicobacter pylori P12 hypothetical protein YP_002301521.1 943567 R 570508 CDS YP_002301522.1 210135083 7010026 complement(943763..944137) 1 NC_011498.1 hypothetical protein 944137 7010026 HPP12_0890 Helicobacter pylori P12 hypothetical protein YP_002301522.1 943763 R 570508 CDS YP_002301523.1 210135084 7010027 complement(944495..946729) 1 NC_011498.1 outer membrane protein BabA 946729 babA 7010027 babA Helicobacter pylori P12 outer membrane protein BabA YP_002301523.1 944495 R 570508 CDS YP_002301524.1 210135085 7010029 947152..947823 1 NC_011498.1 hypothetical protein 947823 7010029 HPP12_0892 Helicobacter pylori P12 hypothetical protein YP_002301524.1 947152 D 570508 CDS YP_002301525.1 210135086 7010031 complement(947676..947948) 1 NC_011498.1 hypothetical protein 947948 7010031 HPP12_0893 Helicobacter pylori P12 hypothetical protein YP_002301525.1 947676 R 570508 CDS YP_002301526.1 210135087 7010032 complement(947915..949027) 1 NC_011498.1 hydrogenase expression/formation protein HypD 949027 hypD 7010032 hypD Helicobacter pylori P12 hydrogenase expression/formation protein HypD YP_002301526.1 947915 R 570508 CDS YP_002301527.1 210135088 7010033 complement(949045..949281) 1 NC_011498.1 hydrogenase expression/formation protein HypC 949281 hypC 7010033 hypC Helicobacter pylori P12 hydrogenase expression/formation protein HypC YP_002301527.1 949045 R 570508 CDS YP_002301528.1 210135089 7010034 complement(949281..950009) 1 NC_011498.1 hydrogenase expression/formation protein HypB 950009 hypB 7010034 hypB Helicobacter pylori P12 hydrogenase expression/formation protein HypB YP_002301528.1 949281 R 570508 CDS YP_002301529.1 210135090 7010035 complement(950124..950252) 1 NC_011498.1 hypothetical protein 950252 7010035 HPP12_0897 Helicobacter pylori P12 hypothetical protein YP_002301529.1 950124 R 570508 CDS YP_002301530.1 210135091 7010036 complement(950263..950562) 1 NC_011498.1 hypothetical protein 950562 7010036 HPP12_0898 Helicobacter pylori P12 hypothetical protein YP_002301530.1 950263 R 570508 CDS YP_002301531.1 210135092 7010037 complement(950660..951016) 1 NC_011498.1 acetate kinase 951016 ackA-3 7010037 ackA-3 Helicobacter pylori P12 acetate kinase YP_002301531.1 950660 R 570508 CDS YP_002301532.1 210135093 7010038 complement(950979..951587) 1 NC_011498.1 acetate kinase 951587 ackA-2 7010038 ackA-2 Helicobacter pylori P12 acetate kinase YP_002301532.1 950979 R 570508 CDS YP_002301533.1 210135094 7010039 complement(951565..951861) 1 NC_011498.1 acetate kinase 951861 ackA-1 7010039 ackA-1 Helicobacter pylori P12 acetate kinase YP_002301533.1 951565 R 570508 CDS YP_002301534.1 210135095 7010040 complement(951879..952418) 1 NC_011498.1 phosphotransacetylase 952418 pta-2 7010040 pta-2 Helicobacter pylori P12 phosphotransacetylase YP_002301534.1 951879 R 570508 CDS YP_002301535.1 210135096 7010041 complement(952453..953424) 1 NC_011498.1 phosphotransacetylase 953424 pta-1 7010041 pta-1 Helicobacter pylori P12 phosphotransacetylase YP_002301535.1 952453 R 570508 CDS YP_002301536.1 210135097 7010042 953673..955193 1 NC_011498.1 hypothetical protein 955193 7010042 HPP12_0904 Helicobacter pylori P12 hypothetical protein YP_002301536.1 953673 D 570508 CDS YP_002301537.1 210135098 7010043 955244..956263 1 NC_011498.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 956263 flgD 7010043 flgD Helicobacter pylori P12 flagellar basal body rod modification protein YP_002301537.1 955244 D 570508 CDS YP_002301538.1 210135099 7010044 956260..958077 1 NC_011498.1 the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 958077 flgE 7010044 flgE Helicobacter pylori P12 flagellar hook protein FlgE YP_002301538.1 956260 D 570508 CDS YP_002301539.1 210135100 7010045 958129..958707 1 NC_011498.1 type II R-M system restriction endonuclease 958707 7010045 HPP12_0907 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002301539.1 958129 D 570508 CDS YP_002301540.1 210135101 7010046 958717..959868 1 NC_011498.1 adenine specific DNA methyltransferase 959868 7010046 HPP12_0908 Helicobacter pylori P12 adenine specific DNA methyltransferase YP_002301540.1 958717 D 570508 CDS YP_002301541.1 210135102 7010047 959872..961899 1 NC_011498.1 single-stranded DNA-dependent ATPase; Rep helicase 961899 rep 7010047 rep Helicobacter pylori P12 Rep helicase YP_002301541.1 959872 D 570508 CDS YP_002301542.1 210135103 7010048 962720..964276 1 NC_011498.1 outer membrane protein HopC/AlpA 964276 alpA 7010048 alpA Helicobacter pylori P12 outer membrane protein HopC/AlpA YP_002301542.1 962720 D 570508 CDS YP_002301543.1 210135104 7010049 964298..965887 1 NC_011498.1 outer membrane protein HopB/AlpB 965887 alpB 7010049 alpB Helicobacter pylori P12 outer membrane protein HopB/AlpB YP_002301543.1 964298 D 570508 CDS YP_002301544.1 210135105 7010050 complement(966562..968106) 1 NC_011498.1 outer membrane protein HofG 968106 hofG 7010050 hofG Helicobacter pylori P12 outer membrane protein HofG YP_002301544.1 966562 R 570508 CDS YP_002301545.1 210135106 7010051 complement(968351..968794) 1 NC_011498.1 iron-regulated outer membrane protein 968794 frpB-3 7010051 frpB-3 Helicobacter pylori P12 iron-regulated outer membrane protein YP_002301545.1 968351 R 570508 CDS YP_002301546.1 210135107 7010052 complement(968819..970792) 1 NC_011498.1 iron-regulated outer membrane protein 970792 frpB-2 7010052 frpB-2 Helicobacter pylori P12 iron-regulated outer membrane protein YP_002301546.1 968819 R 570508 CDS YP_002301547.1 210135108 7010053 complement(971052..971483) 1 NC_011498.1 hypothetical protein 971483 7010053 HPP12_0915 Helicobacter pylori P12 hypothetical protein YP_002301547.1 971052 R 570508 CDS YP_002301548.1 210135109 7010054 complement(971488..974745) 1 NC_011498.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 974745 carB 7010054 carB Helicobacter pylori P12 carbamoyl phosphate synthase large subunit YP_002301548.1 971488 R 570508 CDS YP_002301549.1 210135110 7010055 complement(974845..975537) 1 NC_011498.1 integral membrane protein 975537 7010055 HPP12_0917 Helicobacter pylori P12 integral membrane protein YP_002301549.1 974845 R 570508 CDS YP_002301550.1 210135111 7010056 975681..976679 1 NC_011498.1 glyceraldehyde-3-phosphate dehydrogenase 976679 7010056 HPP12_0918 Helicobacter pylori P12 glyceraldehyde-3-phosphate dehydrogenase YP_002301550.1 975681 D 570508 CDS YP_002301551.1 210135112 7010057 976759..983877 1 NC_011498.1 vacuolating cytotoxin VacA-like protein 983877 7010057 HPP12_0919 Helicobacter pylori P12 vacuolating cytotoxin VacA-like protein YP_002301551.1 976759 D 570508 CDS YP_002301552.1 210135113 7010058 983929..985038 1 NC_011498.1 outer membrane protein HopK 985038 hopK 7010058 hopK Helicobacter pylori P12 outer membrane protein HopK YP_002301552.1 983929 D 570508 CDS YP_002301553.1 210135114 7010059 complement(985100..985306) 1 NC_011498.1 4-oxalocrotonate tautomerase 985306 7010059 HPP12_0921 Helicobacter pylori P12 4-oxalocrotonate tautomerase YP_002301553.1 985100 R 570508 CDS YP_002301554.1 210135115 7010060 985468..986049 1 NC_011498.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 986049 recR 7010060 recR Helicobacter pylori P12 recombination protein RecR YP_002301554.1 985468 D 570508 CDS YP_002301555.1 210135116 7010061 986046..987191 1 NC_011498.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 987191 truD 7010061 truD Helicobacter pylori P12 tRNA pseudouridine synthase D YP_002301555.1 986046 D 570508 CDS YP_002301556.1 210135117 7010062 987178..988110 1 NC_011498.1 putative metalloprotease; heat shock protein HtpX 988110 htpX 7010062 htpX Helicobacter pylori P12 heat shock protein HtpX YP_002301556.1 987178 D 570508 CDS YP_002301557.1 210135118 7010063 988111..988653 1 NC_011498.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 988653 folE 7010063 folE Helicobacter pylori P12 GTP cyclohydrolase I YP_002301557.1 988111 D 570508 CDS YP_002301558.1 210135119 7010064 988669..989580 1 NC_011498.1 trans-isoprenyl diphosphate synthase 989580 ispA 7010064 ispA Helicobacter pylori P12 trans-isoprenyl diphosphate synthase YP_002301558.1 988669 D 570508 CDS YP_002301559.1 210135120 7010065 989577..990380 1 NC_011498.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 990380 surE 7010065 surE Helicobacter pylori P12 stationary phase survival protein SurE YP_002301559.1 989577 D 570508 CDS YP_002301560.1 210135121 7010066 990377..991036 1 NC_011498.1 hypothetical protein 991036 7010066 HPP12_0928 Helicobacter pylori P12 hypothetical protein YP_002301560.1 990377 D 570508 CDS YP_002301561.1 210135122 7010067 991040..991642 1 NC_011498.1 hypothetical protein 991642 7010067 HPP12_0929 Helicobacter pylori P12 hypothetical protein YP_002301561.1 991040 D 570508 CDS YP_002301562.1 210135123 7010068 991645..992400 1 NC_011498.1 radical SAM domain-containing protein 992400 7010068 HPP12_0930 Helicobacter pylori P12 radical SAM domain-containing protein YP_002301562.1 991645 D 570508 CDS YP_002301563.1 210135124 7010069 992411..992896 1 NC_011498.1 hypothetical protein 992896 7010069 HPP12_0931 Helicobacter pylori P12 hypothetical protein YP_002301563.1 992411 D 570508 CDS YP_002301564.1 210135125 7010070 992995..993336 1 NC_011498.1 outer membrane protein HomA-like fragment; hypothetical protein 993336 7010070 HPP12_0932 Helicobacter pylori P12 hypothetical protein YP_002301564.1 992995 D 570508 CDS YP_002301565.1 210135126 7010071 complement(993361..994533) 1 NC_011498.1 proline and betaine transporter 994533 proP 7010071 proP Helicobacter pylori P12 proline and betaine transporter YP_002301565.1 993361 R 570508 CDS YP_002301566.1 210135127 7010072 complement(995005..995391) 1 NC_011498.1 hypothetical protein 995391 7010072 HPP12_0934 Helicobacter pylori P12 hypothetical protein YP_002301566.1 995005 R 570508 CDS YP_002301567.1 210135128 7010073 complement(995339..996337) 1 NC_011498.1 hypothetical protein 996337 7010073 HPP12_0935 Helicobacter pylori P12 hypothetical protein YP_002301567.1 995339 R 570508 CDS YP_002301568.1 210135129 7010074 complement(996760..997473) 1 NC_011498.1 permease protein; amino acid ABC transporter 997473 7010074 HPP12_0936 Helicobacter pylori P12 amino acid ABC transporter YP_002301568.1 996760 R 570508 CDS YP_002301569.1 210135130 7010075 complement(997457..998161) 1 NC_011498.1 periplasmic binding protein; amino acid ABC transporter 998161 7010075 HPP12_0937 Helicobacter pylori P12 amino acid ABC transporter YP_002301569.1 997457 R 570508 CDS YP_002301570.1 210135131 7010076 complement(998296..999429) 1 NC_011498.1 alanine racemase 999429 alr 7010076 alr Helicobacter pylori P12 alanine racemase YP_002301570.1 998296 R 570508 CDS YP_002301571.1 210135132 7010077 complement(999436..1000788) 1 NC_011498.1 D-alanine glycine permease 1000788 7010077 HPP12_0939 Helicobacter pylori P12 D-alanine glycine permease YP_002301571.1 999436 R 570508 CDS YP_002301572.1 210135133 7010078 complement(1000829..1002061) 1 NC_011498.1 D-amino acid dehydrogenase subunit 1002061 dadA 7010078 dadA Helicobacter pylori P12 D-amino acid dehydrogenase subunit YP_002301572.1 1000829 R 570508 CDS YP_002301573.1 210135134 7010079 complement(1002084..1002461) 1 NC_011498.1 translation initiation inhibitor 1002461 7010079 HPP12_0941 Helicobacter pylori P12 translation initiation inhibitor YP_002301573.1 1002084 R 570508 CDS YP_002301574.1 210135135 7010084 1003389..1004879 1 NC_011498.1 integral membrane protein 1004879 7010084 HPP12_0942 Helicobacter pylori P12 integral membrane protein YP_002301574.1 1003389 D 570508 CDS YP_002301575.1 210135136 7010085 1005195..1005557 1 NC_011498.1 hypothetical protein 1005557 7010085 HPP12_0943 Helicobacter pylori P12 hypothetical protein YP_002301575.1 1005195 D 570508 CDS YP_002301576.1 210135137 7010086 complement(1005929..1006942) 1 NC_011498.1 hypothetical protein 1006942 7010086 HPP12_0944 Helicobacter pylori P12 hypothetical protein YP_002301576.1 1005929 R 570508 CDS YP_002301577.1 210135138 7010087 complement(1006952..1007404) 1 NC_011498.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 1007404 7010087 HPP12_0945 Helicobacter pylori P12 rRNA large subunit methyltransferase YP_002301577.1 1006952 R 570508 CDS YP_002301578.1 210135139 7010088 complement(1007418..1008287) 1 NC_011498.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1008287 accD 7010088 accD Helicobacter pylori P12 acetyl-CoA carboxylase subunit beta YP_002301578.1 1007418 R 570508 CDS YP_002301579.1 210135140 7010089 1008368..1008982 1 NC_011498.1 putative recombination protein RecO 1008982 7010089 HPP12_0947 Helicobacter pylori P12 putative recombination protein RecO YP_002301579.1 1008368 D 570508 CDS YP_002301580.1 210135141 7010090 1008993..1009649 1 NC_011498.1 integral membrane protein 1009649 7010090 HPP12_0948 Helicobacter pylori P12 integral membrane protein YP_002301580.1 1008993 D 570508 CDS YP_002301581.1 210135142 7010091 complement(1009652..1010218) 1 NC_011498.1 hypothetical protein 1010218 7010091 HPP12_0949 Helicobacter pylori P12 hypothetical protein YP_002301581.1 1009652 R 570508 CDS YP_002301582.1 210135143 7010092 complement(1010283..1010915) 1 NC_011498.1 oxygen-insensitive NADPH nitroreductase 1010915 7010092 HPP12_0950 Helicobacter pylori P12 oxygen-insensitive NADPH nitroreductase YP_002301582.1 1010283 R 570508 CDS YP_002301583.1 210135144 7010093 complement(1010912..1011766) 1 NC_011498.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1011766 lgt 7010093 lgt Helicobacter pylori P12 prolipoprotein diacylglyceryl transferase YP_002301583.1 1010912 R 570508 CDS YP_002301584.1 210135145 7010094 complement(1011776..1012504) 1 NC_011498.1 ribosomal large subunit pseudouridine synthase C 1012504 7010094 HPP12_0952 Helicobacter pylori P12 ribosomal large subunit pseudouridine synthase C YP_002301584.1 1011776 R 570508 CDS YP_002301585.1 210135146 7010095 complement(1012523..1013704) 1 NC_011498.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1013704 7010095 HPP12_0953 Helicobacter pylori P12 3-deoxy-D-manno-octulosonic-acid transferase YP_002301585.1 1012523 R 570508 CDS YP_002301586.1 210135147 7010096 complement(1013705..1014484) 1 NC_011498.1 hypothetical protein 1014484 7010096 HPP12_0954 Helicobacter pylori P12 hypothetical protein YP_002301586.1 1013705 R 570508 CDS YP_002301587.1 210135148 7010097 complement(1014494..1015225) 1 NC_011498.1 hypothetical protein 1015225 7010097 HPP12_0955 Helicobacter pylori P12 hypothetical protein YP_002301587.1 1014494 R 570508 CDS YP_002301588.1 210135149 7010098 complement(1015227..1016123) 1 NC_011498.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1016123 glyQ 7010098 glyQ Helicobacter pylori P12 glycyl-tRNA synthetase subunit alpha YP_002301588.1 1015227 R 570508 CDS YP_002301589.1 210135150 7010099 complement(1016137..1017075) 1 NC_011498.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1017075 gpsA 7010099 gpsA Helicobacter pylori P12 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_002301589.1 1016137 R 570508 CDS YP_002301590.1 210135151 7010100 complement(1017216..1018976) 1 NC_011498.1 hypothetical protein 1018976 7010100 HPP12_0958 Helicobacter pylori P12 hypothetical protein YP_002301590.1 1017216 R 570508 CDS YP_002301591.1 210135152 7010101 complement(1018976..1019368) 1 NC_011498.1 ATP/GTP-binding protein 1019368 7010101 HPP12_0959 Helicobacter pylori P12 ATP/GTP-binding protein YP_002301591.1 1018976 R 570508 CDS YP_002301592.1 210135153 7010102 complement(1019341..1021305) 1 NC_011498.1 ATP/GTP-binding protein 1021305 7010102 HPP12_0960 Helicobacter pylori P12 ATP/GTP-binding protein YP_002301592.1 1019341 R 570508 CDS YP_002301593.1 210135154 7010103 complement(1021307..1022623) 1 NC_011498.1 hypothetical protein 1022623 7010103 HPP12_0961 Helicobacter pylori P12 hypothetical protein YP_002301593.1 1021307 R 570508 CDS YP_002301594.1 210135155 7010104 complement(1022703..1022954) 1 NC_011498.1 hypothetical protein 1022954 7010104 HPP12_0962 Helicobacter pylori P12 hypothetical protein YP_002301594.1 1022703 R 570508 CDS YP_002301595.1 210135156 7010105 complement(1023165..1023452) 1 NC_011498.1 virulence associated protein D 1023452 vapD 7010105 vapD Helicobacter pylori P12 virulence associated protein D YP_002301595.1 1023165 R 570508 CDS YP_002301596.1 210135157 7010106 complement(1023522..1023803) 1 NC_011498.1 hypothetical protein 1023803 7010106 HPP12_0964 Helicobacter pylori P12 hypothetical protein YP_002301596.1 1023522 R 570508 CDS YP_002301597.1 210135158 7010107 complement(1023819..1026878) 1 NC_011498.1 cation efflux system protein; cobalt-zinc-cadmium resistance protein 1026878 7010107 HPP12_0965 Helicobacter pylori P12 cobalt-zinc-cadmium resistance protein YP_002301597.1 1023819 R 570508 CDS YP_002301598.1 210135159 7010108 complement(1026878..1027957) 1 NC_011498.1 cation efflux system protein; cobalt-zinc-cadmium resistance protein 1027957 7010108 HPP12_0966 Helicobacter pylori P12 cobalt-zinc-cadmium resistance protein YP_002301598.1 1026878 R 570508 CDS YP_002301599.1 210135160 7010109 complement(1027954..1029249) 1 NC_011498.1 nickel cobalt outer membrane efflux protein 1029249 7010109 HPP12_0967 Helicobacter pylori P12 nickel cobalt outer membrane efflux protein YP_002301599.1 1027954 R 570508 CDS YP_002301600.1 210135161 7010110 complement(1029239..1031344) 1 NC_011498.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 1031344 glyS 7010110 glyS Helicobacter pylori P12 glycyl-tRNA synthetase subunit beta YP_002301600.1 1029239 R 570508 CDS YP_002301601.1 210135162 7010111 1031457..1032530 1 NC_011498.1 hypothetical protein 1032530 7010111 HPP12_0969 Helicobacter pylori P12 hypothetical protein YP_002301601.1 1031457 D 570508 CDS YP_002301602.1 210135163 7010112 1032543..1034018 1 NC_011498.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1034018 pgm 7010112 pgm Helicobacter pylori P12 phosphoglyceromutase YP_002301602.1 1032543 D 570508 CDS YP_002301603.1 210135164 7010113 1034033..1034314 1 NC_011498.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1034314 gatC 7010113 gatC Helicobacter pylori P12 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_002301603.1 1034033 D 570508 CDS YP_002301604.1 210135165 7010114 complement(1034434..1035744) 1 NC_011498.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase 1035744 bioA 7010114 bioA Helicobacter pylori P12 adenosylmethionine--8-amino-7-oxononanoate transaminase YP_002301604.1 1034434 R 570508 CDS YP_002301605.1 210135166 7010115 1035874..1037337 1 NC_011498.1 peptidyl-prolyl cis-trans isomerase D 1037337 7010115 HPP12_0973 Helicobacter pylori P12 peptidyl-prolyl cis-trans isomerase D YP_002301605.1 1035874 D 570508 CDS YP_002301606.1 210135167 7010116 1037353..1038831 1 NC_011498.1 cell division protein FtsA 1038831 ftsA 7010116 ftsA Helicobacter pylori P12 cell division protein FtsA YP_002301606.1 1037353 D 570508 CDS YP_002301607.1 210135168 7010117 1038962..1040119 1 NC_011498.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1040119 ftsZ 7010117 ftsZ Helicobacter pylori P12 cell division protein FtsZ YP_002301607.1 1038962 D 570508 CDS YP_002301608.1 210135169 7010118 complement(1040198..1040341) 1 NC_011498.1 hypothetical protein 1040341 7010118 HPP12_0976 Helicobacter pylori P12 hypothetical protein YP_002301608.1 1040198 R 570508 CDS YP_002301609.1 210135170 7010119 complement(1040472..1041137) 1 NC_011498.1 hypothetical protein 1041137 7010119 HPP12_0977 Helicobacter pylori P12 hypothetical protein YP_002301609.1 1040472 R 570508 CDS YP_002301610.1 210135171 7010120 complement(1041309..1041845) 1 NC_011498.1 hypothetical protein 1041845 7010120 HPP12_0978 Helicobacter pylori P12 hypothetical protein YP_002301610.1 1041309 R 570508 CDS YP_002301611.1 210135172 7010121 complement(1042008..1042832) 1 NC_011498.1 mechanosensitive ion channel domain-containing protein 1042832 7010121 HPP12_0979 Helicobacter pylori P12 mechanosensitive ion channel domain-containing protein YP_002301611.1 1042008 R 570508 CDS YP_002301612.1 210135173 7010122 complement(1043356..1044480) 1 NC_011498.1 hypothetical protein 1044480 7010122 HPP12_0980 Helicobacter pylori P12 hypothetical protein YP_002301612.1 1043356 R 570508 CDS YP_002301613.1 210135174 7010123 complement(1044484..1044765) 1 NC_011498.1 hypothetical protein 1044765 7010123 HPP12_0981 Helicobacter pylori P12 hypothetical protein YP_002301613.1 1044484 R 570508 CDS YP_002301614.1 210135175 7010124 complement(1045061..1046974) 1 NC_011498.1 hypothetical protein 1046974 7010124 HPP12_0982 Helicobacter pylori P12 hypothetical protein YP_002301614.1 1045061 R 570508 CDS YP_002301615.1 210135176 7010125 complement(1047017..1047751) 1 NC_011498.1 hypothetical protein 1047751 7010125 HPP12_0983 Helicobacter pylori P12 hypothetical protein YP_002301615.1 1047017 R 570508 CDS YP_002301616.1 210135177 7010126 complement(1047885..1049291) 1 NC_011498.1 hypothetical protein 1049291 7010126 HPP12_0984 Helicobacter pylori P12 hypothetical protein YP_002301616.1 1047885 R 570508 CDS YP_002301617.1 210135178 7010127 complement(1049357..1049623) 1 NC_011498.1 hypothetical protein 1049623 7010127 HPP12_0985 Helicobacter pylori P12 hypothetical protein YP_002301617.1 1049357 R 570508 CDS YP_002301618.1 210135179 7010128 complement(1049671..1049991) 1 NC_011498.1 hypothetical protein 1049991 7010128 HPP12_0986 Helicobacter pylori P12 hypothetical protein YP_002301618.1 1049671 R 570508 CDS YP_002301619.1 210135180 7010129 complement(1050030..1050701) 1 NC_011498.1 hypothetical protein 1050701 7010129 HPP12_0987 Helicobacter pylori P12 hypothetical protein YP_002301619.1 1050030 R 570508 CDS YP_002301620.1 210135181 7010130 complement(1050711..1050881) 1 NC_011498.1 hypothetical protein 1050881 7010130 HPP12_0988 Helicobacter pylori P12 hypothetical protein YP_002301620.1 1050711 R 570508 CDS YP_002301621.1 210135182 7010131 complement(1050977..1051564) 1 NC_011498.1 serine/threonine kinase C-like protein 1051564 7010131 HPP12_0989 Helicobacter pylori P12 serine/threonine kinase C-like protein YP_002301621.1 1050977 R 570508 CDS YP_002301622.1 210135183 7010132 complement(1051604..1052053) 1 NC_011498.1 serine/threonine kinase C-like protein 1052053 7010132 HPP12_0990 Helicobacter pylori P12 serine/threonine kinase C-like protein YP_002301622.1 1051604 R 570508 CDS YP_002301623.1 210135184 7010133 complement(1052213..1052728) 1 NC_011498.1 serine/threonine phosphatase 2C-like protein 1052728 7010133 HPP12_0991 Helicobacter pylori P12 serine/threonine phosphatase 2C-like protein YP_002301623.1 1052213 R 570508 CDS YP_002301624.1 210135185 7010134 complement(1052725..1052973) 1 NC_011498.1 hypothetical protein 1052973 7010134 HPP12_0992 Helicobacter pylori P12 hypothetical protein YP_002301624.1 1052725 R 570508 CDS YP_002301625.1 210135186 7010135 complement(1053140..1053784) 1 NC_011498.1 phage/colicin/tellurite resistance cluster protein TerY 1053784 terY 7010135 terY Helicobacter pylori P12 phage/colicin/tellurite resistance cluster protein TerY YP_002301625.1 1053140 R 570508 CDS YP_002301626.1 210135187 7010136 complement(1053794..1053949) 1 NC_011498.1 hypothetical protein 1053949 7010136 HPP12_0994 Helicobacter pylori P12 hypothetical protein YP_002301626.1 1053794 R 570508 CDS YP_002301627.1 210135188 7010139 1058077..1058427 1 NC_011498.1 hypothetical protein 1058427 7010139 HPP12_0995 Helicobacter pylori P12 hypothetical protein YP_002301627.1 1058077 D 570508 CDS YP_002301628.1 210135189 7010140 1058480..1060213 1 NC_011498.1 hypothetical protein 1060213 7010140 HPP12_0996 Helicobacter pylori P12 hypothetical protein YP_002301628.1 1058480 D 570508 CDS YP_002301629.1 210135190 7010141 1060255..1061508 1 NC_011498.1 hypothetical protein 1061508 7010141 HPP12_0997 Helicobacter pylori P12 hypothetical protein YP_002301629.1 1060255 D 570508 CDS YP_002301630.1 210135191 7010142 1061552..1061683 1 NC_011498.1 hypothetical protein 1061683 7010142 HPP12_0998 Helicobacter pylori P12 hypothetical protein YP_002301630.1 1061552 D 570508 CDS YP_002301631.1 210135192 7010143 1061807..1063411 1 NC_011498.1 hypothetical protein 1063411 7010143 HPP12_0999 Helicobacter pylori P12 hypothetical protein YP_002301631.1 1061807 D 570508 CDS YP_002301632.1 210135193 7010144 1063516..1064145 1 NC_011498.1 hypothetical protein 1064145 7010144 HPP12_1000 Helicobacter pylori P12 hypothetical protein YP_002301632.1 1063516 D 570508 CDS YP_002301633.1 210135194 7010145 1064130..1064426 1 NC_011498.1 hypothetical protein 1064426 7010145 HPP12_1001 Helicobacter pylori P12 hypothetical protein YP_002301633.1 1064130 D 570508 CDS YP_002301634.1 210135195 7010146 complement(1064516..1066363) 1 NC_011498.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1066363 speA 7010146 speA Helicobacter pylori P12 arginine decarboxylase YP_002301634.1 1064516 R 570508 CDS YP_002301635.1 210135196 7010147 complement(1066377..1067546) 1 NC_011498.1 type 1 capsular polysaccharide biosynthesis protein J 1067546 capJ 7010147 capJ Helicobacter pylori P12 type 1 capsular polysaccharide biosynthesis protein J YP_002301635.1 1066377 R 570508 CDS YP_002301636.1 210135197 7010148 complement(1067551..1067979) 1 NC_011498.1 hypothetical protein 1067979 7010148 HPP12_1004 Helicobacter pylori P12 hypothetical protein YP_002301636.1 1067551 R 570508 CDS YP_002301637.1 210135198 7010149 complement(1068000..1068785) 1 NC_011498.1 S-adenosylmethionine-dependent methyltransferase 1068785 7010149 HPP12_1005 Helicobacter pylori P12 S-adenosylmethionine-dependent methyltransferase YP_002301637.1 1068000 R 570508 CDS YP_002301638.1 210135199 7010150 complement(1068789..1069808) 1 NC_011498.1 hypothetical protein 1069808 7010150 HPP12_1006 Helicobacter pylori P12 hypothetical protein YP_002301638.1 1068789 R 570508 CDS YP_002301639.1 210135200 7010151 complement(1069809..1071761) 1 NC_011498.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1071761 metG 7010151 metG Helicobacter pylori P12 methionyl-tRNA synthetase YP_002301639.1 1069809 R 570508 CDS YP_002301640.1 210135201 7010152 1071930..1073099 1 NC_011498.1 cyclopropane fatty acid synthase 1073099 cfa 7010152 cfa Helicobacter pylori P12 cyclopropane fatty acid synthase YP_002301640.1 1071930 D 570508 CDS YP_002301641.1 210135202 7010153 complement(1073102..1074973) 1 NC_011498.1 mechanosensitive ion channel family protein 1074973 7010153 HPP12_1009 Helicobacter pylori P12 mechanosensitive ion channel family protein YP_002301641.1 1073102 R 570508 CDS YP_002301642.1 210135203 7010158 complement(1076208..1076960) 1 NC_011498.1 flagellar sheath adhesin 1076960 7010158 HPP12_1010 Helicobacter pylori P12 flagellar sheath adhesin YP_002301642.1 1076208 R 570508 CDS YP_002301643.1 210135204 7010159 complement(1077045..1078571) 1 NC_011498.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1078571 guaA 7010159 guaA Helicobacter pylori P12 GMP synthase YP_002301643.1 1077045 R 570508 CDS YP_002301644.1 210135205 7010160 complement(1078582..1079070) 1 NC_011498.1 hypothetical protein 1079070 7010160 HPP12_1012 Helicobacter pylori P12 hypothetical protein YP_002301644.1 1078582 R 570508 CDS YP_002301645.1 210135206 7010161 complement(1079237..1081627) 1 NC_011498.1 biotin sulfoxide reductase 1081627 7010161 HPP12_1013 Helicobacter pylori P12 biotin sulfoxide reductase YP_002301645.1 1079237 R 570508 CDS YP_002301646.1 210135207 7010162 complement(1081731..1082321) 1 NC_011498.1 hypothetical protein 1082321 7010162 HPP12_1014 Helicobacter pylori P12 hypothetical protein YP_002301646.1 1081731 R 570508 CDS YP_002301647.1 210135208 7010163 complement(1082347..1083669) 1 NC_011498.1 nifs-like protein 1083669 7010163 HPP12_1015 Helicobacter pylori P12 nifs-like protein YP_002301647.1 1082347 R 570508 CDS YP_002301648.1 210135209 7010164 complement(1083688..1084002) 1 NC_011498.1 ADP hydrolase of the hit protein family 1084002 7010164 HPP12_1016 Helicobacter pylori P12 ADP hydrolase of the hit protein family YP_002301648.1 1083688 R 570508 CDS YP_002301649.1 210135210 7010165 1084083..1085069 1 NC_011498.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1085069 pheS 7010165 pheS Helicobacter pylori P12 phenylalanyl-tRNA synthetase subunit alpha YP_002301649.1 1084083 D 570508 CDS YP_002301650.1 210135211 7010166 1085069..1087363 1 NC_011498.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1087363 pheT 7010166 pheT Helicobacter pylori P12 phenylalanyl-tRNA synthetase subunit beta YP_002301650.1 1085069 D 570508 CDS YP_002301651.1 210135212 7010167 1087379..1088668 1 NC_011498.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1088668 aroA 7010167 aroA Helicobacter pylori P12 3-phosphoshikimate 1-carboxyvinyltransferase YP_002301651.1 1087379 D 570508 CDS YP_002301652.1 210135213 7010168 1088658..1089482 1 NC_011498.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1089482 ispH 7010168 ispH Helicobacter pylori P12 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_002301652.1 1088658 D 570508 CDS YP_002301653.1 210135214 7010169 1089603..1091273 1 NC_011498.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1091273 rpsA 7010169 rpsA Helicobacter pylori P12 30S ribosomal protein S1 YP_002301653.1 1089603 D 570508 CDS YP_002301654.1 210135215 7010170 1091302..1091832 1 NC_011498.1 hypothetical protein 1091832 7010170 HPP12_1022 Helicobacter pylori P12 hypothetical protein YP_002301654.1 1091302 D 570508 CDS YP_002301655.1 210135216 7010171 1091848..1093422 1 NC_011498.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1093422 serA 7010171 serA Helicobacter pylori P12 D-3-phosphoglycerate dehydrogenase YP_002301655.1 1091848 D 570508 CDS YP_002301656.1 210135217 7010172 1093432..1095282 1 NC_011498.1 3-octaprenyl-4-hydroxybenzoate carboxylyase 1095282 7010172 HPP12_1024 Helicobacter pylori P12 3-octaprenyl-4-hydroxybenzoate carboxylyase YP_002301656.1 1093432 D 570508 CDS YP_002301657.1 210135218 7010173 1095305..1095973 1 NC_011498.1 hypothetical protein 1095973 7010173 HPP12_1025 Helicobacter pylori P12 hypothetical protein YP_002301657.1 1095305 D 570508 CDS YP_002301658.1 210135219 7010174 1095975..1096733 1 NC_011498.1 hypothetical protein 1096733 7010174 HPP12_1026 Helicobacter pylori P12 hypothetical protein YP_002301658.1 1095975 D 570508 CDS YP_002301659.1 210135220 7010175 1096737..1097672 1 NC_011498.1 CheA-MCP interaction modulator; chemotaxis protein 1097672 cheV-3 7010175 cheV-3 Helicobacter pylori P12 chemotaxis protein YP_002301659.1 1096737 D 570508 CDS YP_002301660.1 210135221 7010176 1097729..1100146 1 NC_011498.1 autophosphorylating histidine kinase 1100146 cheA 7010176 cheA Helicobacter pylori P12 autophosphorylating histidine kinase YP_002301660.1 1097729 D 570508 CDS YP_002301661.1 210135222 7010177 1100143..1100640 1 NC_011498.1 purine-binding chemotaxis protein/Chea-MCP coupling protein 1100640 cheW 7010177 cheW Helicobacter pylori P12 purine-binding chemotaxis protein/Chea-MCP coupling protein YP_002301661.1 1100143 D 570508 CDS YP_002301662.1 210135223 7010178 complement(1100894..1101394) 1 NC_011498.1 thiol peroxidase 1101394 7010178 HPP12_1030 Helicobacter pylori P12 thiol peroxidase YP_002301662.1 1100894 R 570508 CDS YP_002301663.1 210135224 7010179 1101618..1102259 1 NC_011498.1 iron-dependent superoxide dismutase 1102259 7010179 HPP12_1031 Helicobacter pylori P12 iron-dependent superoxide dismutase YP_002301663.1 1101618 D 570508 CDS YP_002301664.1 210135225 7010180 1102314..1103045 1 NC_011498.1 methyltransferase 1103045 7010180 HPP12_1032 Helicobacter pylori P12 methyltransferase YP_002301664.1 1102314 D 570508 CDS YP_002301665.1 210135226 7010181 complement(1103107..1104966) 1 NC_011498.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1104966 priA 7010181 priA Helicobacter pylori P12 primosome assembly protein PriA YP_002301665.1 1103107 R 570508 CDS YP_002301666.1 210135227 7010182 complement(1104951..1105187) 1 NC_011498.1 hypothetical protein 1105187 7010182 HPP12_1034 Helicobacter pylori P12 hypothetical protein YP_002301666.1 1104951 R 570508 CDS YP_002301667.1 210135228 7010183 complement(1105200..1105427) 1 NC_011498.1 hypothetical protein 1105427 7010183 HPP12_1035 Helicobacter pylori P12 hypothetical protein YP_002301667.1 1105200 R 570508 CDS YP_002301668.1 210135229 7010184 1105630..1106376 1 NC_011498.1 hypothetical protein 1106376 7010184 HPP12_1036 Helicobacter pylori P12 hypothetical protein YP_002301668.1 1105630 D 570508 CDS YP_002301669.1 210135230 7010185 complement(1106384..1106914) 1 NC_011498.1 hypothetical protein 1106914 7010185 HPP12_1037 Helicobacter pylori P12 hypothetical protein YP_002301669.1 1106384 R 570508 CDS YP_002301670.1 210135231 7010186 1106880..1107014 1 NC_011498.1 hypothetical protein 1107014 7010186 HPP12_1038 Helicobacter pylori P12 hypothetical protein YP_002301670.1 1106880 D 570508 CDS YP_002301671.1 210135232 7010187 1107093..1108223 1 NC_011498.1 zinc-metalloprotease 1108223 7010187 HPP12_1039 Helicobacter pylori P12 zinc-metalloprotease YP_002301671.1 1107093 D 570508 CDS YP_002301672.1 210135233 7010188 1108220..1109050 1 NC_011498.1 S-adenosylmethionine-dependent methyltransferase 1109050 hemK 7010188 hemK Helicobacter pylori P12 S-adenosylmethionine-dependent methyltransferase YP_002301672.1 1108220 D 570508 CDS YP_002301673.1 210135234 7010189 1109117..1110463 1 NC_011498.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1110463 gdhA 7010189 gdhA Helicobacter pylori P12 glutamate dehydrogenase YP_002301673.1 1109117 D 570508 CDS YP_002301674.1 210135235 7010190 complement(1110477..1111781) 1 NC_011498.1 alpha-1,3-fucosyltransferase 1111781 7010190 HPP12_1042 Helicobacter pylori P12 alpha-1,3-fucosyltransferase YP_002301674.1 1110477 R 570508 CDS YP_002301675.1 210135236 7010191 complement(1111791..1114601) 1 NC_011498.1 cytochrome C-type biogenesis protein 1114601 7010191 HPP12_1043 Helicobacter pylori P12 cytochrome C-type biogenesis protein YP_002301675.1 1111791 R 570508 CDS YP_002301676.1 210135237 7010192 complement(1114610..1115281) 1 NC_011498.1 thiol:disulfide interchange protein 1115281 7010192 HPP12_1044 Helicobacter pylori P12 thiol:disulfide interchange protein YP_002301676.1 1114610 R 570508 CDS YP_002301677.1 210135238 7010193 complement(1115358..1116362) 1 NC_011498.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1116362 hemH 7010193 hemH Helicobacter pylori P12 ferrochelatase YP_002301677.1 1115358 R 570508 CDS YP_002301678.1 210135239 7010194 1116418..1116849 1 NC_011498.1 hypothetical protein 1116849 7010194 HPP12_1046 Helicobacter pylori P12 hypothetical protein YP_002301678.1 1116418 D 570508 CDS YP_002301679.1 210135240 7010195 1116850..1117530 1 NC_011498.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1117530 7010195 HPP12_1047 Helicobacter pylori P12 16S ribosomal RNA methyltransferase RsmE YP_002301679.1 1116850 D 570508 CDS YP_002301680.1 210135241 7010196 complement(1117554..1119662) 1 NC_011498.1 outer membrane protein HomC 1119662 homC 7010196 homC Helicobacter pylori P12 outer membrane protein HomC YP_002301680.1 1117554 R 570508 CDS YP_002301681.1 210135242 7010197 complement(1119823..1120389) 1 NC_011498.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1120389 dcd 7010197 dcd Helicobacter pylori P12 deoxycytidine triphosphate deaminase YP_002301681.1 1119823 R 570508 CDS YP_002301682.1 210135243 7010198 1120520..1120990 1 NC_011498.1 biotin carboxyl carrier protein 1120990 7010198 HPP12_1050 Helicobacter pylori P12 biotin carboxyl carrier protein YP_002301682.1 1120520 D 570508 CDS YP_002301683.1 210135244 7010199 1120996..1122375 1 NC_011498.1 biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1122375 7010199 HPP12_1051 Helicobacter pylori P12 biotin carboxylase YP_002301683.1 1120996 D 570508 CDS YP_002301684.1 210135245 7010200 1122468..1123430 1 NC_011498.1 type II R-M system methyltransferase 1123430 7010200 HPP12_1052 Helicobacter pylori P12 type II R-M system methyltransferase YP_002301684.1 1122468 D 570508 CDS YP_002301685.1 210135246 7010201 1123430..1123978 1 NC_011498.1 type II R-M system restriction endonuclease 1123978 7010201 HPP12_1053 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002301685.1 1123430 D 570508 CDS YP_002301686.1 210135247 7010202 1124071..1124670 1 NC_011498.1 hypothetical protein 1124670 7010202 HPP12_1054 Helicobacter pylori P12 hypothetical protein YP_002301686.1 1124071 D 570508 CDS YP_002301687.1 210135248 7010203 1124667..1125794 1 NC_011498.1 involved in pseudaminic acid biosynthesis; aminotransferase 1125794 7010203 HPP12_1055 Helicobacter pylori P12 aminotransferase YP_002301687.1 1124667 D 570508 CDS YP_002301688.1 210135249 7010205 1126116..1127141 1 NC_011498.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1127141 nrdF 7010205 nrdF Helicobacter pylori P12 ribonucleotide-diphosphate reductase subunit beta YP_002301688.1 1126116 D 570508 CDS YP_002301689.1 210135250 7010206 1127151..1127780 1 NC_011498.1 catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1127780 pcm 7010206 pcm Helicobacter pylori P12 protein-L-isoaspartate O-methyltransferase YP_002301689.1 1127151 D 570508 CDS YP_002301690.1 210135251 7010207 1127791..1128828 1 NC_011498.1 integral membrane protein 1128828 7010207 HPP12_1058 Helicobacter pylori P12 integral membrane protein YP_002301690.1 1127791 D 570508 CDS YP_002301691.1 210135252 7010208 1128830..1129558 1 NC_011498.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1129558 truA 7010208 truA Helicobacter pylori P12 tRNA pseudouridine synthase A YP_002301691.1 1128830 D 570508 CDS YP_002301692.1 210135253 7010209 complement(1129552..1130586) 1 NC_011498.1 UDP-glucose 4-epimerase 1130586 galE 7010209 galE Helicobacter pylori P12 UDP-glucose 4-epimerase YP_002301692.1 1129552 R 570508 CDS YP_002301693.1 210135254 7010212 1131284..1132819 1 NC_011498.1 outer membrane protein 1132819 7010212 HPP12_1061 Helicobacter pylori P12 outer membrane protein YP_002301693.1 1131284 D 570508 CDS YP_002301694.1 210135255 7010213 1132837..1133589 1 NC_011498.1 short chain alcohol dehydrogenase 1133589 7010213 HPP12_1062 Helicobacter pylori P12 short chain alcohol dehydrogenase YP_002301694.1 1132837 D 570508 CDS YP_002301695.1 210135256 7010214 complement(1133806..1134678) 1 NC_011498.1 cysteine-rich protein C 1134678 hcpC 7010214 hcpC Helicobacter pylori P12 cysteine-rich protein C YP_002301695.1 1133806 R 570508 CDS YP_002301696.1 210135257 7010215 complement(1134753..1135373) 1 NC_011498.1 2-keto-3-deoxy-6-phosphogluconate aldolase 1135373 eda 7010215 eda Helicobacter pylori P12 2-keto-3-deoxy-6-phosphogluconate aldolase YP_002301696.1 1134753 R 570508 CDS YP_002301697.1 210135258 7010216 complement(1135392..1137218) 1 NC_011498.1 catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 1137218 edd 7010216 edd Helicobacter pylori P12 phosphogluconate dehydratase YP_002301697.1 1135392 R 570508 CDS YP_002301698.1 210135259 7010217 1137284..1138561 1 NC_011498.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1138561 7010217 HPP12_1066 Helicobacter pylori P12 glucose-6-phosphate 1-dehydrogenase YP_002301698.1 1137284 D 570508 CDS YP_002301699.1 210135260 7010218 1138572..1139255 1 NC_011498.1 glucose-6-phosphate 1-dehydrogenase 1139255 7010218 HPP12_1067 Helicobacter pylori P12 glucose-6-phosphate 1-dehydrogenase YP_002301699.1 1138572 D 570508 CDS YP_002301700.1 210135261 7010219 1139242..1140252 1 NC_011498.1 catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1140252 glk 7010219 glk Helicobacter pylori P12 glucokinase YP_002301700.1 1139242 D 570508 CDS YP_002301701.1 210135262 7010220 1140422..1141468 1 NC_011498.1 mannitol dehydrogenase 1141468 7010220 HPP12_1069 Helicobacter pylori P12 mannitol dehydrogenase YP_002301701.1 1140422 D 570508 CDS YP_002301702.1 210135263 7010221 complement(1141478..1142674) 1 NC_011498.1 lipopolysaccharide biosynthesis protein 1142674 7010221 HPP12_1070 Helicobacter pylori P12 lipopolysaccharide biosynthesis protein YP_002301702.1 1141478 R 570508 CDS YP_002301703.1 210135264 7010222 1142848..1144155 1 NC_011498.1 hypothetical protein 1144155 7010222 HPP12_1071 Helicobacter pylori P12 hypothetical protein YP_002301703.1 1142848 D 570508 CDS YP_002301704.1 210135265 7010223 complement(1144162..1144824) 1 NC_011498.1 outer membrane protein HorH 1144824 horH 7010223 horH Helicobacter pylori P12 outer membrane protein HorH YP_002301704.1 1144162 R 570508 CDS YP_002301705.1 210135266 7010224 1145115..1145675 1 NC_011498.1 pyruvate flavodoxin oxidoreductase subunit gamma 1145675 porG 7010224 porG Helicobacter pylori P12 pyruvate flavodoxin oxidoreductase subunit gamma YP_002301705.1 1145115 D 570508 CDS YP_002301706.1 210135267 7010225 1145691..1146083 1 NC_011498.1 pyruvate flavodoxin oxidoreductase subunit delta 1146083 porD 7010225 porD Helicobacter pylori P12 pyruvate flavodoxin oxidoreductase subunit delta YP_002301706.1 1145691 D 570508 CDS YP_002301707.1 210135268 7010226 1146093..1147316 1 NC_011498.1 pyruvate flavodoxin oxidoreductase subunit alpha 1147316 porA 7010226 porA Helicobacter pylori P12 pyruvate flavodoxin oxidoreductase subunit alpha YP_002301707.1 1146093 D 570508 CDS YP_002301708.1 210135269 7010227 1147329..1148273 1 NC_011498.1 pyruvate ferredoxin oxidoreductase beta subunit 1148273 porB 7010227 porB Helicobacter pylori P12 pyruvate ferredoxin oxidoreductase beta subunit YP_002301708.1 1147329 D 570508 CDS YP_002301709.1 210135270 7010228 1148381..1149703 1 NC_011498.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1149703 purB 7010228 purB Helicobacter pylori P12 adenylosuccinate lyase YP_002301709.1 1148381 D 570508 CDS YP_002301710.1 210135271 7010229 1149774..1150607 1 NC_011498.1 outer membrane protein HorI 1150607 horI 7010229 horI Helicobacter pylori P12 outer membrane protein HorI YP_002301710.1 1149774 D 570508 CDS YP_002301711.1 210135272 7010230 complement(1150604..1152580) 1 NC_011498.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1152580 uvrB 7010230 uvrB Helicobacter pylori P12 excinuclease ABC subunit B YP_002301711.1 1150604 R 570508 CDS YP_002301712.1 210135273 7010231 complement(1152621..1153301) 1 NC_011498.1 hypothetical protein 1153301 7010231 HPP12_1080 Helicobacter pylori P12 hypothetical protein YP_002301712.1 1152621 R 570508 CDS YP_002301713.1 210135274 7010232 complement(1153314..1156076) 1 NC_011498.1 hypothetical protein 1156076 7010232 HPP12_1081 Helicobacter pylori P12 hypothetical protein YP_002301713.1 1153314 R 570508 CDS YP_002301714.1 210135275 7010233 complement(1156483..1157253) 1 NC_011498.1 cysteine-rich protein X 1157253 hcpX 7010233 hcpX Helicobacter pylori P12 cysteine-rich protein X YP_002301714.1 1156483 R 570508 CDS YP_002301715.1 210135276 7010234 complement(1157491..1159194) 1 NC_011498.1 gamma-glutamyltranspeptidase 1159194 ggt 7010234 ggt Helicobacter pylori P12 gamma-glutamyltranspeptidase YP_002301715.1 1157491 R 570508 CDS YP_002301716.1 210135277 7010235 complement(1159371..1161191) 1 NC_011498.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 1161191 flgK 7010235 flgK Helicobacter pylori P12 flagellar hook-associated protein FlgK YP_002301716.1 1159371 R 570508 CDS YP_002301717.1 210135278 7010236 complement(1161193..1161627) 1 NC_011498.1 hypothetical protein 1161627 7010236 HPP12_1085 Helicobacter pylori P12 hypothetical protein YP_002301717.1 1161193 R 570508 CDS YP_002301718.1 210135279 7010237 complement(1161706..1162458) 1 NC_011498.1 type II R-M system restriction endonuclease 1162458 7010237 HPP12_1086 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002301718.1 1161706 R 570508 CDS YP_002301719.1 210135280 7010238 complement(1162451..1163398) 1 NC_011498.1 type II R-M system methyltransferase 1163398 7010238 HPP12_1087 Helicobacter pylori P12 type II R-M system methyltransferase YP_002301719.1 1162451 R 570508 CDS YP_002301720.1 210135281 7010239 complement(1163561..1163764) 1 NC_011498.1 FlgM protein 1163764 flgM 7010239 flgM Helicobacter pylori P12 FlgM protein YP_002301720.1 1163561 R 570508 CDS YP_002301721.1 210135282 7010240 complement(1163828..1164034) 1 NC_011498.1 hypothetical protein 1164034 7010240 HPP12_1089 Helicobacter pylori P12 hypothetical protein YP_002301721.1 1163828 R 570508 CDS YP_002301722.1 210135283 7010241 complement(1164066..1164623) 1 NC_011498.1 fkbp-type peptidyl-prolyl cis-trans isomerase 1164623 slyD 7010241 slyD Helicobacter pylori P12 fkbp-type peptidyl-prolyl cis-trans isomerase YP_002301722.1 1164066 R 570508 CDS YP_002301723.1 210135284 7010242 complement(1164610..1165605) 1 NC_011498.1 hypothetical protein 1165605 7010242 HPP12_1091 Helicobacter pylori P12 hypothetical protein YP_002301723.1 1164610 R 570508 CDS YP_002301724.1 210135285 7010243 complement(1165613..1166152) 1 NC_011498.1 peptidoglycan-associated lipoprotein precursor 1166152 7010243 HPP12_1092 Helicobacter pylori P12 peptidoglycan-associated lipoprotein precursor YP_002301724.1 1165613 R 570508 CDS YP_002301725.1 210135286 7010244 complement(1166219..1167472) 1 NC_011498.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 1167472 tolB 7010244 tolB Helicobacter pylori P12 translocation protein TolB YP_002301725.1 1166219 R 570508 CDS YP_002301726.1 210135287 7010245 complement(1167469..1168305) 1 NC_011498.1 hypothetical protein 1168305 7010245 HPP12_1094 Helicobacter pylori P12 hypothetical protein YP_002301726.1 1167469 R 570508 CDS YP_002301727.1 210135288 7010246 complement(1168324..1168725) 1 NC_011498.1 biopolymer transport accessory protein ExbD 1168725 exbD-1 7010246 exbD-1 Helicobacter pylori P12 biopolymer transport accessory protein ExbD YP_002301727.1 1168324 R 570508 CDS YP_002301728.1 210135289 7010247 complement(1168778..1169347) 1 NC_011498.1 biopolymer transport accessory protein ExbB 1169347 exbB-1 7010247 exbB-1 Helicobacter pylori P12 biopolymer transport accessory protein ExbB YP_002301728.1 1168778 R 570508 CDS YP_002301729.1 210135290 7010248 complement(1169358..1169729) 1 NC_011498.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1169729 atpC 7010248 atpC Helicobacter pylori P12 F0F1 ATP synthase subunit epsilon YP_002301729.1 1169358 R 570508 CDS YP_002301730.1 210135291 7010249 complement(1169740..1171149) 1 NC_011498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1171149 7010249 HPP12_1098 Helicobacter pylori P12 F0F1 ATP synthase subunit beta YP_002301730.1 1169740 R 570508 CDS YP_002301731.1 210135292 7010250 complement(1171173..1172078) 1 NC_011498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1172078 7010250 HPP12_1099 Helicobacter pylori P12 F0F1 ATP synthase subunit gamma YP_002301731.1 1171173 R 570508 CDS YP_002301732.1 210135293 7010251 complement(1172093..1173604) 1 NC_011498.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1173604 7010251 HPP12_1100 Helicobacter pylori P12 F0F1 ATP synthase subunit alpha YP_002301732.1 1172093 R 570508 CDS YP_002301733.1 210135294 7010252 complement(1173627..1174169) 1 NC_011498.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1174169 7010252 HPP12_1101 Helicobacter pylori P12 F0F1 ATP synthase subunit delta YP_002301733.1 1173627 R 570508 CDS YP_002301734.1 210135295 7010253 complement(1174170..1174685) 1 NC_011498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1174685 7010253 HPP12_1102 Helicobacter pylori P12 F0F1 ATP synthase subunit B YP_002301734.1 1174170 R 570508 CDS YP_002301735.1 210135296 7010254 complement(1174689..1175123) 1 NC_011498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' 1175123 7010254 HPP12_1103 Helicobacter pylori P12 F0F1 ATP synthase subunit B' YP_002301735.1 1174689 R 570508 CDS YP_002301736.1 210135297 7010255 complement(1175233..1176105) 1 NC_011498.1 chromosome partitioning protein 1176105 spo0J 7010255 spo0J Helicobacter pylori P12 chromosome partitioning protein YP_002301736.1 1175233 R 570508 CDS YP_002301737.1 210135298 7010256 complement(1176109..1176903) 1 NC_011498.1 chromosome partitioning protein 1176903 soj 7010256 soj Helicobacter pylori P12 chromosome partitioning protein YP_002301737.1 1176109 R 570508 CDS YP_002301738.1 210135299 7010257 complement(1176906..1177544) 1 NC_011498.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 1177544 7010257 HPP12_1106 Helicobacter pylori P12 biotin--protein ligase YP_002301738.1 1176906 R 570508 CDS YP_002301739.1 210135300 7010258 complement(1177541..1178458) 1 NC_011498.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 1178458 fmt 7010258 fmt Helicobacter pylori P12 methionyl-tRNA formyltransferase YP_002301739.1 1177541 R 570508 CDS YP_002301740.1 210135301 7010259 complement(1178460..1181081) 1 NC_011498.1 involved in DNA repair; ATPase 1181081 7010259 HPP12_1108 Helicobacter pylori P12 ATPase YP_002301740.1 1178460 R 570508 CDS YP_002301741.1 210135302 7010260 complement(1181126..1182427) 1 NC_011498.1 hypothetical protein 1182427 7010260 HPP12_1109 Helicobacter pylori P12 hypothetical protein YP_002301741.1 1181126 R 570508 CDS YP_002301742.1 210135303 7010261 1182635..1183066 1 NC_011498.1 hypothetical protein 1183066 7010261 HPP12_1110 Helicobacter pylori P12 hypothetical protein YP_002301742.1 1182635 D 570508 CDS YP_002301743.1 210135304 7010263 complement(1185649..1186536) 1 NC_011498.1 hypothetical protein 1186536 7010263 HPP12_1111 Helicobacter pylori P12 hypothetical protein YP_002301743.1 1185649 R 570508 CDS YP_002301744.1 210135305 7010264 1186680..1186829 1 NC_011498.1 hypothetical protein 1186829 7010264 HPP12_1112 Helicobacter pylori P12 hypothetical protein YP_002301744.1 1186680 D 570508 CDS YP_002301745.1 210135306 7010265 complement(1186826..1187182) 1 NC_011498.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1187182 rplS 7010265 rplS Helicobacter pylori P12 50S ribosomal protein L19 YP_002301745.1 1186826 R 570508 CDS YP_002301746.1 210135307 7010266 complement(1187204..1187893) 1 NC_011498.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1187893 trmD 7010266 trmD Helicobacter pylori P12 tRNA (guanine-N(1)-)-methyltransferase YP_002301746.1 1187204 R 570508 CDS YP_002301747.1 210135308 7010267 complement(1187894..1188448) 1 NC_011498.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1188448 rimM 7010267 rimM Helicobacter pylori P12 16S rRNA-processing protein RimM YP_002301747.1 1187894 R 570508 CDS YP_002301748.1 210135309 7010268 complement(1188449..1188796) 1 NC_011498.1 hypothetical protein 1188796 7010268 HPP12_1116 Helicobacter pylori P12 hypothetical protein YP_002301748.1 1188449 R 570508 CDS YP_002301749.1 210135310 7010269 complement(1188813..1189043) 1 NC_011498.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1189043 rpsP 7010269 rpsP Helicobacter pylori P12 30S ribosomal protein S16 YP_002301749.1 1188813 R 570508 CDS YP_002301750.1 210135311 7010270 complement(1189117..1190463) 1 NC_011498.1 signal recognition particle protein 1190463 ffh 7010270 ffh Helicobacter pylori P12 signal recognition particle protein YP_002301750.1 1189117 R 570508 CDS YP_002301751.1 210135312 7010271 complement(1190478..1193096) 1 NC_011498.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1193096 valS 7010271 valS Helicobacter pylori P12 valyl-tRNA synthetase YP_002301751.1 1190478 R 570508 CDS YP_002301752.1 210135313 7010272 1193233..1193640 1 NC_011498.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1193640 fliW-1 7010272 fliW-1 Helicobacter pylori P12 flagellar assembly protein FliW YP_002301752.1 1193233 D 570508 CDS YP_002301753.1 210135314 7010273 1193652..1194713 1 NC_011498.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1194713 murG 7010273 murG Helicobacter pylori P12 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_002301753.1 1193652 D 570508 CDS YP_002301754.1 210135315 7010274 1194821..1196911 1 NC_011498.1 outer membrane protein HopI 1196911 hopI 7010274 hopI Helicobacter pylori P12 outer membrane protein HopI YP_002301754.1 1194821 D 570508 CDS YP_002301755.1 210135316 7010275 1196934..1200635 1 NC_011498.1 outer membrane protein HopL 1200635 hopL 7010275 hopL Helicobacter pylori P12 outer membrane protein HopL YP_002301755.1 1196934 D 570508 CDS YP_002301756.1 210135317 7010276 1200649..1201422 1 NC_011498.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1201422 proC 7010276 proC Helicobacter pylori P12 pyrroline-5-carboxylate reductase YP_002301756.1 1200649 D 570508 CDS YP_002301757.1 210135318 7010277 1201450..1201983 1 NC_011498.1 cell filamentation protein Fic 1201983 fic 7010277 fic Helicobacter pylori P12 cell filamentation protein Fic YP_002301757.1 1201450 D 570508 CDS YP_002301758.1 210135319 7010278 complement(1202074..1202496) 1 NC_011498.1 putative metalloprotease 1202496 7010278 HPP12_1126 Helicobacter pylori P12 putative metalloprotease YP_002301758.1 1202074 R 570508 CDS YP_002301759.1 210135320 7010279 complement(1202550..1203044) 1 NC_011498.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1203044 fldA 7010279 fldA Helicobacter pylori P12 flavodoxin FldA YP_002301759.1 1202550 R 570508 CDS YP_002301760.1 210135321 7010280 complement(1203136..1203717) 1 NC_011498.1 integral membrane protein 1203717 7010280 HPP12_1128 Helicobacter pylori P12 integral membrane protein YP_002301760.1 1203136 R 570508 CDS YP_002301761.1 210135322 7010281 1203841..1204032 1 NC_011498.1 cation transport subunit for cbb3-type oxidase 1204032 7010281 HPP12_1129 Helicobacter pylori P12 cation transport subunit for cbb3-type oxidase YP_002301761.1 1203841 D 570508 CDS YP_002301762.1 210135323 7010282 1204058..1205026 1 NC_011498.1 thioredoxin reductase family protein 1205026 trxB-2 7010282 trxB-2 Helicobacter pylori P12 thioredoxin reductase family protein YP_002301762.1 1204058 D 570508 CDS YP_002301763.1 210135324 7010283 complement(1205224..1206384) 1 NC_011498.1 major facilitator superfamily permease 1206384 7010283 HPP12_1131 Helicobacter pylori P12 major facilitator superfamily permease YP_002301763.1 1205224 R 570508 CDS YP_002301764.1 210135325 7010284 1206447..1208084 1 NC_011498.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1208084 pgi 7010284 pgi Helicobacter pylori P12 glucose-6-phosphate isomerase YP_002301764.1 1206447 D 570508 CDS YP_002301765.1 210135326 7010285 1208392..1209807 1 NC_011498.1 outer membrane protein HofH 1209807 hofH 7010285 hofH Helicobacter pylori P12 outer membrane protein HofH YP_002301765.1 1208392 D 570508 CDS YP_002301766.1 210135327 7010286 complement(1210204..1212258) 1 NC_011498.1 carbon starvation protein A 1212258 7010286 HPP12_1134 Helicobacter pylori P12 carbon starvation protein A YP_002301766.1 1210204 R 570508 CDS YP_002301767.1 210135328 7010287 1212467..1213120 1 NC_011498.1 glutamine ABC transporter permease protein 1213120 7010287 HPP12_1135 Helicobacter pylori P12 glutamine ABC transporter permease protein YP_002301767.1 1212467 D 570508 CDS YP_002301768.1 210135329 7010288 1213123..1213794 1 NC_011498.1 glutamine ABC transporter permease protein 1213794 glnP 7010288 glnP Helicobacter pylori P12 glutamine ABC transporter permease protein YP_002301768.1 1213123 D 570508 CDS YP_002301769.1 210135330 7010289 1213796..1214542 1 NC_011498.1 glutamine ABC transporter ATP-binding protein 1214542 glnQ 7010289 glnQ Helicobacter pylori P12 glutamine ABC transporter ATP-binding protein YP_002301769.1 1213796 D 570508 CDS YP_002301770.1 210135331 7010290 1214591..1215424 1 NC_011498.1 glutamine ABC transporter periplasmic glutamine-binding protein 1215424 7010290 HPP12_1138 Helicobacter pylori P12 glutamine ABC transporter periplasmic glutamine-binding protein YP_002301770.1 1214591 D 570508 CDS YP_002301771.1 210135332 7010291 1215546..1216097 1 NC_011498.1 hypothetical protein 1216097 7010291 HPP12_1139 Helicobacter pylori P12 hypothetical protein YP_002301771.1 1215546 D 570508 CDS YP_002301772.1 210135333 7010292 complement(1216402..1217625) 1 NC_011498.1 glucose/galactose transporter 1217625 7010292 HPP12_1140 Helicobacter pylori P12 glucose/galactose transporter YP_002301772.1 1216402 R 570508 CDS YP_002301773.1 210135334 7010293 complement(1217754..1219061) 1 NC_011498.1 integral membrane protein 1219061 7010293 HPP12_1141 Helicobacter pylori P12 integral membrane protein YP_002301773.1 1217754 R 570508 CDS YP_002301774.1 210135335 7010294 complement(1219541..1221469) 1 NC_011498.1 outer membrane protein HopQ 1221469 hopQ 7010294 hopQ Helicobacter pylori P12 outer membrane protein HopQ YP_002301774.1 1219541 R 570508 CDS YP_002301775.1 210135336 7010295 complement(1221931..1222632) 1 NC_011498.1 purine-nucleoside phosphorylase 1222632 deoD 7010295 deoD Helicobacter pylori P12 purine-nucleoside phosphorylase YP_002301775.1 1221931 R 570508 CDS YP_002301776.1 210135337 7010296 complement(1222629..1223870) 1 NC_011498.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1223870 deoB 7010296 deoB Helicobacter pylori P12 phosphopentomutase YP_002301776.1 1222629 R 570508 CDS YP_002301777.1 210135338 7010297 complement(1223882..1225138) 1 NC_011498.1 pyrimidine nucleoside transport protein 1225138 nupC 7010297 nupC Helicobacter pylori P12 pyrimidine nucleoside transport protein YP_002301777.1 1223882 R 570508 CDS YP_002301778.1 210135339 7010299 1225451..1226782 1 NC_011498.1 multidrug-efflux transporter 1226782 7010299 HPP12_1146 Helicobacter pylori P12 multidrug-efflux transporter YP_002301778.1 1225451 D 570508 CDS YP_002301779.1 210135340 7010300 1226801..1227562 1 NC_011498.1 PP-loop family protein 1227562 7010300 HPP12_1147 Helicobacter pylori P12 PP-loop family protein YP_002301779.1 1226801 D 570508 CDS YP_002301780.1 210135341 7010301 complement(1227559..1228710) 1 NC_011498.1 na+/h+ antiporter 1228710 7010301 HPP12_1148 Helicobacter pylori P12 na+/h+ antiporter YP_002301780.1 1227559 R 570508 CDS YP_002301781.1 210135342 7010302 complement(1228736..1230115) 1 NC_011498.1 integral membrane protein 1230115 7010302 HPP12_1149 Helicobacter pylori P12 integral membrane protein YP_002301781.1 1228736 R 570508 CDS YP_002301782.1 210135343 7010303 1230089..1230223 1 NC_011498.1 hypothetical protein 1230223 7010303 HPP12_1150 Helicobacter pylori P12 hypothetical protein YP_002301782.1 1230089 D 570508 CDS YP_002301783.1 210135344 7010304 complement(1230282..1231457) 1 NC_011498.1 sugar efflux transporter 1231457 7010304 HPP12_1151 Helicobacter pylori P12 sugar efflux transporter YP_002301783.1 1230282 R 570508 CDS YP_002301784.1 210135345 7010305 1231729..1232472 1 NC_011498.1 alpha-carbonic anhydrase 1232472 7010305 HPP12_1152 Helicobacter pylori P12 alpha-carbonic anhydrase YP_002301784.1 1231729 D 570508 CDS YP_002301785.1 210135346 7010306 complement(1232713..1233948) 1 NC_011498.1 hypothetical protein 1233948 7010306 HPP12_1153 Helicobacter pylori P12 hypothetical protein YP_002301785.1 1232713 R 570508 CDS YP_002301786.1 210135347 7010307 complement(1234228..1235298) 1 NC_011498.1 hypothetical protein 1235298 7010307 HPP12_1154 Helicobacter pylori P12 hypothetical protein YP_002301786.1 1234228 R 570508 CDS YP_002301787.1 210135348 7010308 complement(1235711..1236751) 1 NC_011498.1 aspartate-semialdehyde dehydrogenase 1236751 asd 7010308 asd Helicobacter pylori P12 aspartate-semialdehyde dehydrogenase YP_002301787.1 1235711 R 570508 CDS YP_002301788.1 210135349 7010309 complement(1236738..1238066) 1 NC_011498.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1238066 hisS 7010309 hisS Helicobacter pylori P12 histidyl-tRNA synthetase YP_002301788.1 1236738 R 570508 CDS YP_002301789.1 210135350 7010310 1238128..1239177 1 NC_011498.1 ADP-heptose-lps-heptosyltransferase II 1239177 7010310 HPP12_1157 Helicobacter pylori P12 ADP-heptose-lps-heptosyltransferase II YP_002301789.1 1238128 D 570508 CDS YP_002301790.1 210135351 7010311 complement(1239368..1239697) 1 NC_011498.1 hypothetical protein 1239697 7010311 HPP12_1158 Helicobacter pylori P12 hypothetical protein YP_002301790.1 1239368 R 570508 CDS YP_002301791.1 210135352 7010312 1239975..1240904 1 NC_011498.1 aldo-keto reductase 1240904 7010312 HPP12_1159 Helicobacter pylori P12 aldo-keto reductase YP_002301791.1 1239975 D 570508 CDS YP_002301792.1 210135353 7010313 complement(1241421..1243499) 1 NC_011498.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1243499 fusA 7010313 fusA Helicobacter pylori P12 elongation factor G YP_002301792.1 1241421 R 570508 CDS YP_002301793.1 210135354 7010314 complement(1243511..1243978) 1 NC_011498.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1243978 rpsG 7010314 rpsG Helicobacter pylori P12 30S ribosomal protein S7 YP_002301793.1 1243511 R 570508 CDS YP_002301794.1 210135355 7010315 complement(1243994..1244401) 1 NC_011498.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1244401 rpsL 7010315 rpsL Helicobacter pylori P12 30S ribosomal protein S12 YP_002301794.1 1243994 R 570508 CDS YP_002301795.1 210135356 7010316 complement(1244539..1253163) 1 NC_011498.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; fusion of rpoB and rpoC; beta and beta' subunits are part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta/beta' 1253163 rpoB 7010316 rpoB Helicobacter pylori P12 DNA-directed RNA polymerase subunit beta/beta' YP_002301795.1 1244539 R 570508 CDS YP_002301796.1 210135357 7010317 complement(1253385..1253762) 1 NC_011498.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1253762 rplL 7010317 rplL Helicobacter pylori P12 50S ribosomal protein L7/L12 YP_002301796.1 1253385 R 570508 CDS YP_002301797.1 210135358 7010318 complement(1253807..1254301) 1 NC_011498.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1254301 rplJ 7010318 rplJ Helicobacter pylori P12 50S ribosomal protein L10 YP_002301797.1 1253807 R 570508 CDS YP_002301798.1 210135359 7010319 complement(1254410..1255114) 1 NC_011498.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1255114 rplA 7010319 rplA Helicobacter pylori P12 50S ribosomal protein L1 YP_002301798.1 1254410 R 570508 CDS YP_002301799.1 210135360 7010320 complement(1255159..1255584) 1 NC_011498.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1255584 rplK 7010320 rplK Helicobacter pylori P12 50S ribosomal protein L11 YP_002301799.1 1255159 R 570508 CDS YP_002301800.1 210135361 7010321 complement(1255602..1256132) 1 NC_011498.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1256132 nusG 7010321 nusG Helicobacter pylori P12 transcription antitermination protein NusG YP_002301800.1 1255602 R 570508 CDS YP_002301801.1 210135362 7010322 complement(1256159..1256338) 1 NC_011498.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1256338 secE 7010322 secE Helicobacter pylori P12 preprotein translocase subunit SecE YP_002301801.1 1256159 R 570508 CDS YP_002301802.1 210135363 7010324 complement(1256786..1257985) 1 NC_011498.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1257985 7010324 HPP12_1170 Helicobacter pylori P12 elongation factor Tu YP_002301802.1 1256786 R 570508 CDS YP_002301803.1 210135364 7010329 1258683..1260419 1 NC_011498.1 ABC transporter ATP-binding protein 1260419 7010329 HPP12_1171 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002301803.1 1258683 D 570508 CDS YP_002301804.1 210135365 7010330 complement(1260430..1261098) 1 NC_011498.1 hypothetical protein 1261098 7010330 HPP12_1172 Helicobacter pylori P12 hypothetical protein YP_002301804.1 1260430 R 570508 CDS YP_002301805.1 210135366 7010331 complement(1261299..1262288) 1 NC_011498.1 type II R-M system methyltransferase 1262288 7010331 HPP12_1173 Helicobacter pylori P12 type II R-M system methyltransferase YP_002301805.1 1261299 R 570508 CDS YP_002301806.1 210135367 7010332 complement(1262297..1262683) 1 NC_011498.1 type II R-M system restriction endonuclease 1262683 7010332 HPP12_1174 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002301806.1 1262297 R 570508 CDS YP_002301807.1 210135368 7010333 complement(1262641..1262991) 1 NC_011498.1 type II R-M system restriction endonuclease 1262991 7010333 HPP12_1175 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002301807.1 1262641 R 570508 CDS YP_002301808.1 210135369 7010334 complement(1263079..1263594) 1 NC_011498.1 serine acetyltransferase 1263594 cysE 7010334 cysE Helicobacter pylori P12 serine acetyltransferase YP_002301808.1 1263079 R 570508 CDS YP_002301809.1 210135370 7010337 complement(1264193..1264510) 1 NC_011498.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1264510 7010337 HPP12_1177 Helicobacter pylori P12 F0F1 ATP synthase subunit C YP_002301809.1 1264193 R 570508 CDS YP_002301810.1 210135371 7010338 1264806..1265912 1 NC_011498.1 hypothetical protein 1265912 7010338 HPP12_1178 Helicobacter pylori P12 hypothetical protein YP_002301810.1 1264806 D 570508 CDS YP_002301811.1 210135372 7010339 complement(1265965..1268031) 1 NC_011498.1 polynucleotide phosphorylase/polyadenylase 1268031 pnp 7010339 pnp Helicobacter pylori P12 polynucleotide phosphorylase/polyadenylase YP_002301811.1 1265965 R 570508 CDS YP_002301812.1 210135373 7010340 complement(1268034..1268738) 1 NC_011498.1 hypothetical protein 1268738 7010340 HPP12_1180 Helicobacter pylori P12 hypothetical protein YP_002301812.1 1268034 R 570508 CDS YP_002301813.1 210135374 7010341 complement(1268753..1271014) 1 NC_011498.1 organic solvent tolerance protein 1271014 7010341 HPP12_1181 Helicobacter pylori P12 organic solvent tolerance protein YP_002301813.1 1268753 R 570508 CDS YP_002301814.1 210135375 7010342 complement(1271017..1271496) 1 NC_011498.1 hypothetical protein 1271496 7010342 HPP12_1182 Helicobacter pylori P12 hypothetical protein YP_002301814.1 1271017 R 570508 CDS YP_002301815.1 210135376 7010343 complement(1271545..1272819) 1 NC_011498.1 glycinamide ribonucleotide synthetase 1272819 purD 7010343 purD Helicobacter pylori P12 glycinamide ribonucleotide synthetase YP_002301815.1 1271545 R 570508 CDS YP_002301816.1 210135377 7010344 complement(1273203..1273583) 1 NC_011498.1 hypothetical protein 1273583 7010344 HPP12_1184 Helicobacter pylori P12 hypothetical protein YP_002301816.1 1273203 R 570508 CDS YP_002301817.1 210135378 7010345 complement(1273549..1273998) 1 NC_011498.1 hypothetical protein 1273998 7010345 HPP12_1185 Helicobacter pylori P12 hypothetical protein YP_002301817.1 1273549 R 570508 CDS YP_002301818.1 210135379 7010346 complement(1274441..1275127) 1 NC_011498.1 ABC transporter ATP-binding protein 1275127 7010346 HPP12_1186 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002301818.1 1274441 R 570508 CDS YP_002301819.1 210135380 7010347 complement(1275121..1275825) 1 NC_011498.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1275825 7010347 HPP12_1187 Helicobacter pylori P12 undecaprenyl pyrophosphate synthase YP_002301819.1 1275121 R 570508 CDS YP_002301820.1 210135381 7010348 complement(1275866..1278706) 1 NC_011498.1 D-lactate dehydrogenase 1278706 dld 7010348 dld Helicobacter pylori P12 D-lactate dehydrogenase YP_002301820.1 1275866 R 570508 CDS YP_002301821.1 210135382 7010349 1278778..1279125 1 NC_011498.1 hypothetical protein 1279125 7010349 HPP12_1189 Helicobacter pylori P12 hypothetical protein YP_002301821.1 1278778 D 570508 CDS YP_002301822.1 210135383 7010350 1279128..1279808 1 NC_011498.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1279808 hemD 7010350 hemD Helicobacter pylori P12 uroporphyrinogen-III synthase YP_002301822.1 1279128 D 570508 CDS YP_002301823.1 210135384 7010351 1279855..1280247 1 NC_011498.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1280247 crcB 7010351 crcB Helicobacter pylori P12 camphor resistance protein CrcB YP_002301823.1 1279855 D 570508 CDS YP_002301824.1 210135385 7010352 complement(1280299..1281336) 1 NC_011498.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1281336 hemN-2 7010352 hemN-2 Helicobacter pylori P12 coproporphyrinogen III oxidase YP_002301824.1 1280299 R 570508 CDS YP_002301825.1 210135386 7010353 1281432..1281722 1 NC_011498.1 cytochrome C553 1281722 7010353 HPP12_1193 Helicobacter pylori P12 cytochrome C553 YP_002301825.1 1281432 D 570508 CDS YP_002301826.1 210135387 7010354 1281883..1282350 1 NC_011498.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1282350 mutT 7010354 mutT Helicobacter pylori P12 dinucleoside polyphosphate hydrolase YP_002301826.1 1281883 D 570508 CDS YP_002301827.1 210135388 7010355 1282352..1283569 1 NC_011498.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1283569 lysC 7010355 lysC Helicobacter pylori P12 aspartate kinase YP_002301827.1 1282352 D 570508 CDS YP_002301828.1 210135389 7010356 1283566..1284108 1 NC_011498.1 hypothetical protein 1284108 7010356 HPP12_1196 Helicobacter pylori P12 hypothetical protein YP_002301828.1 1283566 D 570508 CDS YP_002301829.1 210135390 7010357 1284105..1284761 1 NC_011498.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1284761 holB 7010357 holB Helicobacter pylori P12 DNA polymerase III subunit delta' YP_002301829.1 1284105 D 570508 CDS YP_002301830.1 210135391 7010358 1284758..1285900 1 NC_011498.1 dihydropteroate synthase 1285900 folP 7010358 folP Helicobacter pylori P12 dihydropteroate synthase YP_002301830.1 1284758 D 570508 CDS YP_002301831.1 210135392 7010359 complement(1285988..1286449) 1 NC_011498.1 hypothetical protein 1286449 7010359 HPP12_1199 Helicobacter pylori P12 hypothetical protein YP_002301831.1 1285988 R 570508 CDS YP_002301832.1 210135393 7010360 1286819..1287715 1 NC_011498.1 membrane transport protein 1287715 7010360 HPP12_1200 Helicobacter pylori P12 membrane transport protein YP_002301832.1 1286819 D 570508 CDS YP_002301833.1 210135394 7010361 1287719..1288966 1 NC_011498.1 integral membrane protein 1288966 7010361 HPP12_1201 Helicobacter pylori P12 integral membrane protein YP_002301833.1 1287719 D 570508 CDS YP_002301834.1 210135395 7010362 1289045..1289596 1 NC_011498.1 hypothetical protein 1289596 7010362 HPP12_1202 Helicobacter pylori P12 hypothetical protein YP_002301834.1 1289045 D 570508 CDS YP_002301835.1 210135396 7010363 1289596..1290723 1 NC_011498.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1290723 carA 7010363 carA Helicobacter pylori P12 carbamoyl phosphate synthase small subunit YP_002301835.1 1289596 D 570508 CDS YP_002301836.1 210135397 7010364 1290890..1291894 1 NC_011498.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 1291894 amiF 7010364 amiF Helicobacter pylori P12 formamidase YP_002301836.1 1290890 D 570508 CDS YP_002301837.1 210135398 7010958 complement(1292380..1292916) 1 NC_011498.1 hypothetical protein 1292916 7010958 HPP12_1205 Helicobacter pylori P12 hypothetical protein YP_002301837.1 1292380 R 570508 CDS YP_002301838.1 210135399 7010959 complement(1292969..1293541) 1 NC_011498.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1293541 7010959 HPP12_1206 Helicobacter pylori P12 Maf-like protein YP_002301838.1 1292969 R 570508 CDS YP_002301839.1 210135400 7010960 complement(1293543..1296086) 1 NC_011498.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1296086 alaS 7010960 alaS Helicobacter pylori P12 alanyl-tRNA synthetase YP_002301839.1 1293543 R 570508 CDS YP_002301840.1 210135401 7010961 1296206..1296436 1 NC_011498.1 hypothetical protein 1296436 7010961 HPP12_1208 Helicobacter pylori P12 hypothetical protein YP_002301840.1 1296206 D 570508 CDS YP_002301841.1 210135402 7010962 complement(1297039..1299120) 1 NC_011498.1 outer membrane protein HopT/BabB 1299120 babB 7010962 babB Helicobacter pylori P12 outer membrane protein HopT/BabB YP_002301841.1 1297039 R 570508 CDS YP_002301842.1 210135403 7010963 complement(1299704..1299961) 1 NC_011498.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1299961 rpsR 7010963 rpsR Helicobacter pylori P12 30S ribosomal protein S18 YP_002301842.1 1299704 R 570508 CDS YP_002301843.1 210135404 7010964 complement(1299984..1300529) 1 NC_011498.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1300529 ssb 7010964 ssb Helicobacter pylori P12 single-stranded DNA-binding protein YP_002301843.1 1299984 R 570508 CDS YP_002301844.1 210135405 7010965 complement(1300539..1300967) 1 NC_011498.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1300967 rpsF 7010965 rpsF Helicobacter pylori P12 30S ribosomal protein S6 YP_002301844.1 1300539 R 570508 CDS YP_002301845.1 210135406 7010966 complement(1301120..1302142) 1 NC_011498.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1302142 7010966 HPP12_1213 Helicobacter pylori P12 DNA polymerase III subunit delta YP_002301845.1 1301120 R 570508 CDS YP_002301846.1 210135407 7010967 complement(1302132..1304066) 1 NC_011498.1 3'-5' exoribonuclease R 1304066 vacB 7010967 vacB Helicobacter pylori P12 3'-5' exoribonuclease R YP_002301846.1 1302132 R 570508 CDS YP_002301847.1 210135408 7010968 complement(1304066..1304857) 1 NC_011498.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1304857 aroE 7010968 aroE Helicobacter pylori P12 shikimate 5-dehydrogenase YP_002301847.1 1304066 R 570508 CDS YP_002301848.1 210135409 7010969 complement(1304865..1305455) 1 NC_011498.1 hypothetical protein 1305455 7010969 HPP12_1216 Helicobacter pylori P12 hypothetical protein YP_002301848.1 1304865 R 570508 CDS YP_002301849.1 210135410 7010970 complement(1305464..1306510) 1 NC_011498.1 oligopeptide ABC transporter permease protein 1306510 7010970 HPP12_1217 Helicobacter pylori P12 oligopeptide ABC transporter permease protein YP_002301849.1 1305464 R 570508 CDS YP_002301850.1 210135411 7010971 complement(1306507..1308291) 1 NC_011498.1 oligopeptide ABC transporter periplasmic oligopeptide-binding protein 1308291 7010971 HPP12_1218 Helicobacter pylori P12 oligopeptide ABC transporter periplasmic oligopeptide-binding protein YP_002301850.1 1306507 R 570508 CDS YP_002301851.1 210135412 7010972 complement(1308292..1309272) 1 NC_011498.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1309272 trpS 7010972 trpS Helicobacter pylori P12 tryptophanyl-tRNA synthetase YP_002301851.1 1308292 R 570508 CDS YP_002301852.1 210135413 7010973 complement(1309343..1310080) 1 NC_011498.1 biotin synthesis protein BioC 1310080 bioC 7010973 bioC Helicobacter pylori P12 biotin synthesis protein BioC YP_002301852.1 1309343 R 570508 CDS YP_002301853.1 210135414 7010974 1310204..1310809 1 NC_011498.1 preprotein translocase subunit SecG 1310809 secG 7010974 secG Helicobacter pylori P12 preprotein translocase subunit SecG YP_002301853.1 1310204 D 570508 CDS YP_002301854.1 210135415 7010975 1310809..1311366 1 NC_011498.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1311366 frr 7010975 frr Helicobacter pylori P12 ribosome recycling factor YP_002301854.1 1310809 D 570508 CDS YP_002301855.1 210135416 7010976 1311370..1311975 1 NC_011498.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1311975 pyrE 7010976 pyrE Helicobacter pylori P12 orotate phosphoribosyltransferase YP_002301855.1 1311370 D 570508 CDS YP_002301856.1 210135417 7010977 1311965..1312429 1 NC_011498.1 hypothetical protein 1312429 7010977 HPP12_1224 Helicobacter pylori P12 hypothetical protein YP_002301856.1 1311965 D 570508 CDS YP_002301857.1 210135418 7010978 1312426..1313115 1 NC_011498.1 NAD-dependent deacetylase 1313115 7010978 HPP12_1225 Helicobacter pylori P12 NAD-dependent deacetylase YP_002301857.1 1312426 D 570508 CDS YP_002301858.1 210135419 7010979 1313223..1313624 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 1313624 nuoA 7010979 nuoA Helicobacter pylori P12 NADH dehydrogenase subunit A YP_002301858.1 1313223 D 570508 CDS YP_002301859.1 210135420 7010980 1313624..1314103 1 NC_011498.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1314103 nuoB 7010980 nuoB Helicobacter pylori P12 NADH dehydrogenase subunit B YP_002301859.1 1313624 D 570508 CDS YP_002301860.1 210135421 7010981 1314103..1314900 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C 1314900 nuoC 7010981 nuoC Helicobacter pylori P12 NADH dehydrogenase subunit C YP_002301860.1 1314103 D 570508 CDS YP_002301861.1 210135422 7010982 1314902..1316131 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1316131 nuoD 7010982 nuoD Helicobacter pylori P12 NADH dehydrogenase subunit D YP_002301861.1 1314902 D 570508 CDS YP_002301862.1 210135423 7010983 1316128..1316358 1 NC_011498.1 NADH-ubiquinone oxidoreductase chain E 1316358 nuoE 7010983 nuoE Helicobacter pylori P12 NADH-ubiquinone oxidoreductase chain E YP_002301862.1 1316128 D 570508 CDS YP_002301863.1 210135424 7010984 1316361..1317341 1 NC_011498.1 NADH-ubiquinone oxidoreductase chain F 1317341 nuoF 7010984 nuoF Helicobacter pylori P12 NADH-ubiquinone oxidoreductase chain F YP_002301863.1 1316361 D 570508 CDS YP_002301864.1 210135425 7010985 1317338..1319872 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1319872 nuoG 7010985 nuoG Helicobacter pylori P12 NADH dehydrogenase subunit G YP_002301864.1 1317338 D 570508 CDS YP_002301865.1 210135426 7010986 1319869..1320858 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1320858 nuoH 7010986 nuoH Helicobacter pylori P12 NADH dehydrogenase subunit H YP_002301865.1 1319869 D 570508 CDS YP_002301866.1 210135427 7010987 1320869..1321531 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1321531 nuoI 7010987 nuoI Helicobacter pylori P12 NADH dehydrogenase subunit I YP_002301866.1 1320869 D 570508 CDS YP_002301867.1 210135428 7010988 1321524..1322072 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1322072 nuoJ 7010988 nuoJ Helicobacter pylori P12 NADH dehydrogenase subunit J YP_002301867.1 1321524 D 570508 CDS YP_002301868.1 210135429 7010989 1322069..1322371 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1322371 nuoK 7010989 nuoK Helicobacter pylori P12 NADH dehydrogenase subunit K YP_002301868.1 1322069 D 570508 CDS YP_002301869.1 210135430 7010990 1322374..1324212 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1324212 nuoL 7010990 nuoL Helicobacter pylori P12 NADH dehydrogenase subunit L YP_002301869.1 1322374 D 570508 CDS YP_002301870.1 210135431 7010991 1324216..1325754 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1325754 nuoM 7010991 nuoM Helicobacter pylori P12 NADH dehydrogenase subunit M YP_002301870.1 1324216 D 570508 CDS YP_002301871.1 210135432 7010992 1325741..1327219 1 NC_011498.1 Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1327219 nuoN 7010992 nuoN Helicobacter pylori P12 NADH dehydrogenase subunit N YP_002301871.1 1325741 D 570508 CDS YP_002301872.1 210135433 7010993 1327209..1329614 1 NC_011498.1 paralysed flagella protein 1329614 pflA 7010993 pflA Helicobacter pylori P12 paralysed flagella protein YP_002301872.1 1327209 D 570508 CDS YP_002301873.1 210135434 7010994 1329617..1330993 1 NC_011498.1 phosphomannomutase 1330993 7010994 HPP12_1241 Helicobacter pylori P12 phosphomannomutase YP_002301873.1 1329617 D 570508 CDS YP_002301874.1 210135435 7010995 1331291..1331578 1 NC_011498.1 hypothetical protein 1331578 7010995 HPP12_1242 Helicobacter pylori P12 hypothetical protein YP_002301874.1 1331291 D 570508 CDS YP_002301875.1 210135436 7010996 complement(1331809..1332597) 1 NC_011498.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1332597 trpA 7010996 trpA Helicobacter pylori P12 tryptophan synthase subunit alpha YP_002301875.1 1331809 R 570508 CDS YP_002301876.1 210135437 7010997 complement(1332594..1333775) 1 NC_011498.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1333775 trpB 7010997 trpB Helicobacter pylori P12 tryptophan synthase subunit beta YP_002301876.1 1332594 R 570508 CDS YP_002301877.1 210135438 7010998 complement(1333776..1335134) 1 NC_011498.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1335134 trpC 7010998 trpC Helicobacter pylori P12 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase YP_002301877.1 1333776 R 570508 CDS YP_002301878.1 210135439 7010999 complement(1335127..1336134) 1 NC_011498.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1336134 trpD 7010999 trpD Helicobacter pylori P12 anthranilate phosphoribosyltransferase YP_002301878.1 1335127 R 570508 CDS YP_002301879.1 210135440 7011000 complement(1336131..1336715) 1 NC_011498.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1336715 trpG 7011000 trpG Helicobacter pylori P12 anthranilate synthase component II YP_002301879.1 1336131 R 570508 CDS YP_002301880.1 210135441 7011001 complement(1336712..1338214) 1 NC_011498.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1338214 trpE 7011001 trpE Helicobacter pylori P12 anthranilate synthase component I YP_002301880.1 1336712 R 570508 CDS YP_002301881.1 210135442 7011002 complement(1338437..1339894) 1 NC_011498.1 hypothetical protein 1339894 7011002 HPP12_1249 Helicobacter pylori P12 hypothetical protein YP_002301881.1 1338437 R 570508 CDS YP_002301882.1 210135443 7011003 complement(1339990..1341030) 1 NC_011498.1 hypothetical protein 1341030 7011003 HPP12_1250 Helicobacter pylori P12 hypothetical protein YP_002301882.1 1339990 R 570508 CDS YP_002301883.1 210135444 7011004 complement(1341100..1341837) 1 NC_011498.1 acid phosphatase lipoprotein 1341837 7011004 HPP12_1251 Helicobacter pylori P12 acid phosphatase lipoprotein YP_002301883.1 1341100 R 570508 CDS YP_002301884.1 210135445 7011005 1341961..1342623 1 NC_011498.1 hypothetical protein 1342623 7011005 HPP12_1252 Helicobacter pylori P12 hypothetical protein YP_002301884.1 1341961 D 570508 CDS YP_002301885.1 210135446 7011006 complement(1342574..1343065) 1 NC_011498.1 transcriptional regulator 1343065 7011006 HPP12_1253 Helicobacter pylori P12 transcriptional regulator YP_002301885.1 1342574 R 570508 CDS YP_002301886.1 210135447 7011007 1343908..1344279 1 NC_011498.1 hypothetical protein 1344279 7011007 HPP12_1254 Helicobacter pylori P12 hypothetical protein YP_002301886.1 1343908 D 570508 CDS YP_002301887.1 210135448 7011008 1344303..1344788 1 NC_011498.1 hypothetical protein 1344788 7011008 HPP12_1255 Helicobacter pylori P12 hypothetical protein YP_002301887.1 1344303 D 570508 CDS YP_002301888.1 210135449 7011009 1344973..1345635 1 NC_011498.1 nicotinamide mononucleotide transporter 1345635 pnuC 7011009 pnuC Helicobacter pylori P12 nicotinamide mononucleotide transporter YP_002301888.1 1344973 D 570508 CDS YP_002301889.1 210135450 7011010 1345623..1346237 1 NC_011498.1 hypothetical protein 1346237 7011010 HPP12_1257 Helicobacter pylori P12 hypothetical protein YP_002301889.1 1345623 D 570508 CDS YP_002301890.1 210135451 7011011 complement(1346874..1347224) 1 NC_011498.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1347224 rplQ 7011011 rplQ Helicobacter pylori P12 50S ribosomal protein L17 YP_002301890.1 1346874 R 570508 CDS YP_002301891.1 210135452 7011012 complement(1347224..1348258) 1 NC_011498.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1348258 rpoA 7011012 rpoA Helicobacter pylori P12 DNA-directed RNA polymerase subunit alpha YP_002301891.1 1347224 R 570508 CDS YP_002301892.1 210135453 7011013 complement(1348270..1348896) 1 NC_011498.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1348896 rpsD 7011013 rpsD Helicobacter pylori P12 30S ribosomal protein S4 YP_002301892.1 1348270 R 570508 CDS YP_002301893.1 210135454 7011014 complement(1348906..1349301) 1 NC_011498.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1349301 rpsK 7011014 rpsK Helicobacter pylori P12 30S ribosomal protein S11 YP_002301893.1 1348906 R 570508 CDS YP_002301894.1 210135455 7011015 complement(1349324..1349686) 1 NC_011498.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1349686 rpsM 7011015 rpsM Helicobacter pylori P12 30S ribosomal protein S13 YP_002301894.1 1349324 R 570508 CDS YP_002301895.1 210135456 7011016 complement(1349882..1350100) 1 NC_011498.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 1350100 infA 7011016 infA Helicobacter pylori P12 translation initiation factor IF-1 YP_002301895.1 1349882 R 570508 CDS YP_002301896.1 210135457 7011017 complement(1350100..1350861) 1 NC_011498.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 1350861 map 7011017 map Helicobacter pylori P12 methionine aminopeptidase YP_002301896.1 1350100 R 570508 CDS YP_002301897.1 210135458 7011018 complement(1350861..1352123) 1 NC_011498.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1352123 secY 7011018 secY Helicobacter pylori P12 preprotein translocase subunit SecY YP_002301897.1 1350861 R 570508 CDS YP_002301898.1 210135459 7011019 complement(1352166..1352567) 1 NC_011498.1 late assembly protein; 50S ribosomal protein L15 1352567 rplO 7011019 rplO Helicobacter pylori P12 50S ribosomal protein L15 YP_002301898.1 1352166 R 570508 CDS YP_002301899.1 210135460 7011020 complement(1352585..1353046) 1 NC_011498.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1353046 rpsE 7011020 rpsE Helicobacter pylori P12 30S ribosomal protein S5 YP_002301899.1 1352585 R 570508 CDS YP_002301900.1 210135461 7011021 complement(1353043..1353399) 1 NC_011498.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1353399 rplR 7011021 rplR Helicobacter pylori P12 50S ribosomal protein L18 YP_002301900.1 1353043 R 570508 CDS YP_002301901.1 210135462 7011022 complement(1353413..1353949) 1 NC_011498.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1353949 rplF 7011022 rplF Helicobacter pylori P12 50S ribosomal protein L6 YP_002301901.1 1353413 R 570508 CDS YP_002301902.1 210135463 7011023 complement(1353960..1354355) 1 NC_011498.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1354355 rpsH 7011023 rpsH Helicobacter pylori P12 30S ribosomal protein S8 YP_002301902.1 1353960 R 570508 CDS YP_002301903.1 210135464 7011024 complement(1354562..1355107) 1 NC_011498.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1355107 rplE 7011024 rplE Helicobacter pylori P12 50S ribosomal protein L5 YP_002301903.1 1354562 R 570508 CDS YP_002301904.1 210135465 7011025 complement(1355120..1355341) 1 NC_011498.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1355341 rplX 7011025 rplX Helicobacter pylori P12 50S ribosomal protein L24 YP_002301904.1 1355120 R 570508 CDS YP_002301905.1 210135466 7011026 complement(1355316..1355708) 1 NC_011498.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1355708 rplN 7011026 rplN Helicobacter pylori P12 50S ribosomal protein L14 YP_002301905.1 1355316 R 570508 CDS YP_002301906.1 210135467 7011027 complement(1355711..1355971) 1 NC_011498.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1355971 rpsQ 7011027 rpsQ Helicobacter pylori P12 30S ribosomal protein S17 YP_002301906.1 1355711 R 570508 CDS YP_002301907.1 210135468 7011028 complement(1355985..1356185) 1 NC_011498.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1356185 rpmC 7011028 rpmC Helicobacter pylori P12 50S ribosomal protein L29 YP_002301907.1 1355985 R 570508 CDS YP_002301908.1 210135469 7011029 complement(1356172..1356597) 1 NC_011498.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1356597 rplP 7011029 rplP Helicobacter pylori P12 50S ribosomal protein L16 YP_002301908.1 1356172 R 570508 CDS YP_002301909.1 210135470 7011030 complement(1356600..1357304) 1 NC_011498.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 1357304 rpsC 7011030 rpsC Helicobacter pylori P12 30S ribosomal protein S3 YP_002301909.1 1356600 R 570508 CDS YP_002301910.1 210135471 7011031 complement(1357308..1357676) 1 NC_011498.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1357676 rplV 7011031 rplV Helicobacter pylori P12 50S ribosomal protein L22 YP_002301910.1 1357308 R 570508 CDS YP_002301911.1 210135472 7011032 complement(1357686..1357967) 1 NC_011498.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1357967 rpsS 7011032 rpsS Helicobacter pylori P12 30S ribosomal protein S19 YP_002301911.1 1357686 R 570508 CDS YP_002301912.1 210135473 7011033 complement(1357978..1358808) 1 NC_011498.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1358808 rplB 7011033 rplB Helicobacter pylori P12 50S ribosomal protein L2 YP_002301912.1 1357978 R 570508 CDS YP_002301913.1 210135474 7011034 complement(1358825..1359106) 1 NC_011498.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1359106 rplW 7011034 rplW Helicobacter pylori P12 50S ribosomal protein L23 YP_002301913.1 1358825 R 570508 CDS YP_002301914.1 210135475 7011035 complement(1359110..1359757) 1 NC_011498.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1359757 rplD 7011035 rplD Helicobacter pylori P12 50S ribosomal protein L4 YP_002301914.1 1359110 R 570508 CDS YP_002301915.1 210135476 7011036 complement(1359792..1360367) 1 NC_011498.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1360367 rplC 7011036 rplC Helicobacter pylori P12 50S ribosomal protein L3 YP_002301915.1 1359792 R 570508 CDS YP_002301916.1 210135477 7011037 complement(1360404..1360718) 1 NC_011498.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1360718 rpsJ 7011037 rpsJ Helicobacter pylori P12 30S ribosomal protein S10 YP_002301916.1 1360404 R 570508 CDS YP_002301917.1 210135478 7011038 1360928..1362016 1 NC_011498.1 hypothetical protein 1362016 7011038 HPP12_1285 Helicobacter pylori P12 hypothetical protein YP_002301917.1 1360928 D 570508 CDS YP_002301918.1 210135479 7011039 1362205..1362783 1 NC_011498.1 hypothetical protein 1362783 7011039 HPP12_1286 Helicobacter pylori P12 hypothetical protein YP_002301918.1 1362205 D 570508 CDS YP_002301919.1 210135480 7011040 complement(1362757..1363371) 1 NC_011498.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1363371 rnhB 7011040 rnhB Helicobacter pylori P12 ribonuclease HII YP_002301919.1 1362757 R 570508 CDS YP_002301920.1 210135481 7011041 complement(1363479..1363652) 1 NC_011498.1 hypothetical protein 1363652 7011041 HPP12_1288 Helicobacter pylori P12 hypothetical protein YP_002301920.1 1363479 R 570508 CDS YP_002301921.1 210135482 7011042 complement(1363674..1365065) 1 NC_011498.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1365065 fumC 7011042 fumC Helicobacter pylori P12 fumarate hydratase YP_002301921.1 1363674 R 570508 CDS YP_002301922.1 210135483 7011043 1365240..1365617 1 NC_011498.1 hypothetical protein 1365617 7011043 HPP12_1290 Helicobacter pylori P12 hypothetical protein YP_002301922.1 1365240 D 570508 CDS YP_002301923.1 210135484 7011044 1365622..1366860 1 NC_011498.1 hypothetical protein 1366860 7011044 HPP12_1291 Helicobacter pylori P12 hypothetical protein YP_002301923.1 1365622 D 570508 CDS YP_002301924.1 210135485 7011045 1366857..1367873 1 NC_011498.1 cation efflux system protein; cobalt-zinc-cadmium resistance protein 1367873 czcB 7011045 czcB Helicobacter pylori P12 cobalt-zinc-cadmium resistance protein YP_002301924.1 1366857 D 570508 CDS YP_002301925.1 210135486 7011046 1367874..1370981 1 NC_011498.1 cation efflux system protein; cobalt-zinc-cadmium resistance protein 1370981 czcA 7011046 czcA Helicobacter pylori P12 cobalt-zinc-cadmium resistance protein YP_002301925.1 1367874 D 570508 CDS YP_002301926.1 210135487 7011047 complement(1370962..1371318) 1 NC_011498.1 branched-chain amino acid transport protein 1371318 7011047 HPP12_1294 Helicobacter pylori P12 branched-chain amino acid transport protein YP_002301926.1 1370962 R 570508 CDS YP_002301927.1 210135488 7011048 complement(1371312..1371998) 1 NC_011498.1 branched-chain amino acid transport protein 1371998 7011048 HPP12_1295 Helicobacter pylori P12 branched-chain amino acid transport protein YP_002301927.1 1371312 R 570508 CDS YP_002301928.1 210135489 7011049 complement(1372009..1373118) 1 NC_011498.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1373118 dnaJ 7011049 dnaJ Helicobacter pylori P12 chaperone protein DnaJ YP_002301928.1 1372009 R 570508 CDS YP_002301929.1 210135490 7011050 1373243..1374379 1 NC_011498.1 hypothetical protein 1374379 7011050 HPP12_1297 Helicobacter pylori P12 hypothetical protein YP_002301929.1 1373243 D 570508 CDS YP_002301930.1 210135491 7011051 complement(1374423..1375511) 1 NC_011498.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1375511 mnmA 7011051 mnmA Helicobacter pylori P12 tRNA-specific 2-thiouridylase MnmA YP_002301930.1 1374423 R 570508 CDS YP_002301931.1 210135492 7011052 1375591..1376352 1 NC_011498.1 hypothetical protein 1376352 7011052 HPP12_1299 Helicobacter pylori P12 hypothetical protein YP_002301931.1 1375591 D 570508 CDS YP_002301932.1 210135493 7011053 complement(1376349..1376873) 1 NC_011498.1 nicotinate-nucleotide adenyltransferase 1376873 7011053 HPP12_1300 Helicobacter pylori P12 nicotinate-nucleotide adenyltransferase YP_002301932.1 1376349 R 570508 CDS YP_002301933.1 210135494 7011054 complement(1376857..1377303) 1 NC_011498.1 Inhibits transcription at high concentrations of nickel; nickel responsive regulator 1377303 7011054 HPP12_1301 Helicobacter pylori P12 nickel responsive regulator YP_002301933.1 1376857 R 570508 CDS YP_002301934.1 210135495 7011055 1377628..1378065 1 NC_011498.1 biopolymer transport protein ExbB 1378065 exbB-2 7011055 exbB-2 Helicobacter pylori P12 biopolymer transport protein ExbB YP_002301934.1 1377628 D 570508 CDS YP_002301935.1 210135496 7011056 1378062..1378451 1 NC_011498.1 biopolymer transport protein ExbD 1378451 exbD-2 7011056 exbD-2 Helicobacter pylori P12 biopolymer transport protein ExbD YP_002301935.1 1378062 D 570508 CDS YP_002301936.1 210135497 7011057 1378417..1379277 1 NC_011498.1 siderophore-mediated iron transport protein 1379277 tonB 7011057 tonB Helicobacter pylori P12 siderophore-mediated iron transport protein YP_002301936.1 1378417 D 570508 CDS YP_002301937.1 210135498 7011058 1379460..1381547 1 NC_011498.1 outer membrane protein HopN 1381547 hopN 7011058 hopN Helicobacter pylori P12 outer membrane protein HopN YP_002301937.1 1379460 D 570508 CDS YP_002301938.1 210135499 7011059 complement(1381686..1382414) 1 NC_011498.1 integral membrane protein 1382414 7011059 HPP12_1306 Helicobacter pylori P12 integral membrane protein YP_002301938.1 1381686 R 570508 CDS YP_002301939.1 210135500 7011060 complement(1382421..1383377) 1 NC_011498.1 magnesium and cobalt transport protein 1383377 corA 7011060 corA Helicobacter pylori P12 magnesium and cobalt transport protein YP_002301939.1 1382421 R 570508 CDS YP_002301940.1 210135501 7011061 complement(1383393..1384601) 1 NC_011498.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1384601 pgk 7011061 pgk Helicobacter pylori P12 phosphoglycerate kinase YP_002301940.1 1383393 R 570508 CDS YP_002301941.1 210135502 7011062 complement(1384617..1385609) 1 NC_011498.1 glyceraldehyde-3-phosphate dehydrogenase 1385609 gap 7011062 gap Helicobacter pylori P12 glyceraldehyde-3-phosphate dehydrogenase YP_002301941.1 1384617 R 570508 CDS YP_002301942.1 210135503 7011063 complement(1385698..1386399) 1 NC_011498.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 1386399 ung 7011063 ung Helicobacter pylori P12 uracil-DNA glycosylase YP_002301942.1 1385698 R 570508 CDS YP_002301943.1 210135504 7011064 complement(1386396..1387112) 1 NC_011498.1 1-acyl-SN-glycerol-3-phosphate acyltransferase 1387112 plsC 7011064 plsC Helicobacter pylori P12 1-acyl-SN-glycerol-3-phosphate acyltransferase YP_002301943.1 1386396 R 570508 CDS YP_002301944.1 210135505 7011065 complement(1387099..1388262) 1 NC_011498.1 hypothetical protein 1388262 7011065 HPP12_1312 Helicobacter pylori P12 hypothetical protein YP_002301944.1 1387099 R 570508 CDS YP_002301945.1 210135506 7011066 complement(1388269..1389633) 1 NC_011498.1 carboxyl-terminal protease 1389633 7011066 HPP12_1313 Helicobacter pylori P12 carboxyl-terminal protease YP_002301945.1 1388269 R 570508 CDS YP_002301946.1 210135507 7011067 complement(1389854..1390261) 1 NC_011498.1 type II R-M system restriction endonuclease 1390261 7011067 HPP12_1314 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002301946.1 1389854 R 570508 CDS YP_002301947.1 210135508 7011068 complement(1390306..1390851) 1 NC_011498.1 hypothetical protein 1390851 7011068 HPP12_1315 Helicobacter pylori P12 hypothetical protein YP_002301947.1 1390306 R 570508 CDS YP_002301948.1 210135509 7011069 complement(1390860..1390988) 1 NC_011498.1 hypothetical protein 1390988 7011069 HPP12_1316 Helicobacter pylori P12 hypothetical protein YP_002301948.1 1390860 R 570508 CDS YP_002301949.1 210135510 7011070 complement(1391041..1391214) 1 NC_011498.1 hypothetical protein 1391214 7011070 HPP12_1317 Helicobacter pylori P12 hypothetical protein YP_002301949.1 1391041 R 570508 CDS YP_002301950.1 210135511 7011071 complement(1391189..1391668) 1 NC_011498.1 adenine specific DNA methyltransferase-like fragment; hypothetical protein 1391668 7011071 HPP12_1318 Helicobacter pylori P12 hypothetical protein YP_002301950.1 1391189 R 570508 CDS YP_002301951.1 210135512 7011073 1394833..1395621 1 NC_011498.1 hypothetical protein 1395621 7011073 HPP12_1320 Helicobacter pylori P12 hypothetical protein YP_002301951.1 1394833 D 570508 CDS YP_002301952.1 210135513 7011074 1395624..1395854 1 NC_011498.1 hypothetical protein 1395854 7011074 HPP12_1321 Helicobacter pylori P12 hypothetical protein YP_002301952.1 1395624 D 570508 CDS YP_002301953.1 210135514 7011075 1395847..1396335 1 NC_011498.1 hypothetical protein 1396335 7011075 HPP12_1322 Helicobacter pylori P12 hypothetical protein YP_002301953.1 1395847 D 570508 CDS YP_002301954.1 210135515 7011076 1396323..1396607 1 NC_011498.1 VirB2 type IV secretion protein 1396607 virB2-2 7011076 virB2-2 Helicobacter pylori P12 VirB2 type IV secretion protein YP_002301954.1 1396323 D 570508 CDS YP_002301955.1 210135516 7011077 1396619..1396882 1 NC_011498.1 VirB3 type IV secretion protein 1396882 virB3-2 7011077 virB3-2 Helicobacter pylori P12 VirB3 type IV secretion protein YP_002301955.1 1396619 D 570508 CDS YP_002301956.1 210135517 7011078 1396894..1397130 1 NC_011498.1 hypothetical protein 1397130 7011078 HPP12_1325 Helicobacter pylori P12 hypothetical protein YP_002301956.1 1396894 D 570508 CDS YP_002301957.1 210135518 7011079 1397130..1399706 1 NC_011498.1 VirB4 type IV secretion ATPase 1399706 virB4-2 7011079 virB4-2 Helicobacter pylori P12 VirB4 type IV secretion ATPase YP_002301957.1 1397130 D 570508 CDS YP_002301958.1 210135519 7011080 1399703..1399843 1 NC_011498.1 VirB7 type IV secretion protein 1399843 virB7-2 7011080 virB7-2 Helicobacter pylori P12 VirB7 type IV secretion protein YP_002301958.1 1399703 D 570508 CDS YP_002301959.1 210135520 7011081 1399836..1400972 1 NC_011498.1 VirB8 type IV secretion protein 1400972 virB8-2 7011081 virB8-2 Helicobacter pylori P12 VirB8 type IV secretion protein YP_002301959.1 1399836 D 570508 CDS YP_002301960.1 210135521 7011082 1400969..1402624 1 NC_011498.1 VirB9 type IV secretion protein 1402624 virB9-2 7011082 virB9-2 Helicobacter pylori P12 VirB9 type IV secretion protein YP_002301960.1 1400969 D 570508 CDS YP_002301961.1 210135522 7011083 1402591..1403829 1 NC_011498.1 VirB10 type IV secretion protein 1403829 virB10-2 7011083 virB10-2 Helicobacter pylori P12 VirB10 type IV secretion protein YP_002301961.1 1402591 D 570508 CDS YP_002301962.1 210135523 7011084 1403813..1405597 1 NC_011498.1 hypothetical protein 1405597 7011084 HPP12_1331 Helicobacter pylori P12 hypothetical protein YP_002301962.1 1403813 D 570508 CDS YP_002301963.1 210135524 7011085 1405501..1406055 1 NC_011498.1 hypothetical protein 1406055 7011085 HPP12_1332 Helicobacter pylori P12 hypothetical protein YP_002301963.1 1405501 D 570508 CDS YP_002301964.1 210135525 7011086 1406068..1407030 1 NC_011498.1 hypothetical protein 1407030 7011086 HPP12_1333 Helicobacter pylori P12 hypothetical protein YP_002301964.1 1406068 D 570508 CDS YP_002301965.1 210135526 7011087 1407047..1407322 1 NC_011498.1 hypothetical protein 1407322 7011087 HPP12_1334 Helicobacter pylori P12 hypothetical protein YP_002301965.1 1407047 D 570508 CDS YP_002301966.1 210135527 7011088 1407327..1408271 1 NC_011498.1 VirB11 type IV secretion ATPase 1408271 virB11-3 7011088 virB11-3 Helicobacter pylori P12 VirB11 type IV secretion ATPase YP_002301966.1 1407327 D 570508 CDS YP_002301967.1 210135528 7011089 1408268..1408786 1 NC_011498.1 hypothetical protein 1408786 7011089 HPP12_1336 Helicobacter pylori P12 hypothetical protein YP_002301967.1 1408268 D 570508 CDS YP_002301968.1 210135529 7011090 1408783..1411026 1 NC_011498.1 VirD4 coupling protein 1411026 virD4-2 7011090 virD4-2 Helicobacter pylori P12 VirD4 coupling protein YP_002301968.1 1408783 D 570508 CDS YP_002301969.1 210135530 7011092 1413163..1413633 1 NC_011498.1 hypothetical protein 1413633 7011092 HPP12_1339 Helicobacter pylori P12 hypothetical protein YP_002301969.1 1413163 D 570508 CDS YP_002301970.1 210135531 7011093 1413603..1414406 1 NC_011498.1 hypothetical protein 1414406 7011093 HPP12_1340 Helicobacter pylori P12 hypothetical protein YP_002301970.1 1413603 D 570508 CDS YP_002301971.1 210135532 7011094 complement(1414480..1415145) 1 NC_011498.1 hypothetical protein 1415145 7011094 HPP12_1341 Helicobacter pylori P12 hypothetical protein YP_002301971.1 1414480 R 570508 CDS YP_002301972.1 210135533 7011095 complement(1415123..1415401) 1 NC_011498.1 hypothetical protein 1415401 7011095 HPP12_1342 Helicobacter pylori P12 hypothetical protein YP_002301972.1 1415123 R 570508 CDS YP_002301973.1 210135534 7011096 complement(1415334..1415765) 1 NC_011498.1 hypothetical protein 1415765 7011096 HPP12_1343 Helicobacter pylori P12 hypothetical protein YP_002301973.1 1415334 R 570508 CDS YP_002301974.1 210135535 7011097 1415750..1416160 1 NC_011498.1 hypothetical protein 1416160 7011097 HPP12_1344 Helicobacter pylori P12 hypothetical protein YP_002301974.1 1415750 D 570508 CDS YP_002301975.1 210135536 7011098 complement(1416165..1416794) 1 NC_011498.1 hypothetical protein 1416794 7011098 HPP12_1345 Helicobacter pylori P12 hypothetical protein YP_002301975.1 1416165 R 570508 CDS YP_002301976.1 210135537 7011099 complement(1416897..1417178) 1 NC_011498.1 hypothetical protein 1417178 7011099 HPP12_1346 Helicobacter pylori P12 hypothetical protein YP_002301976.1 1416897 R 570508 CDS YP_002301977.1 210135538 7011100 1417399..1417788 1 NC_011498.1 hypothetical protein 1417788 7011100 HPP12_1347 Helicobacter pylori P12 hypothetical protein YP_002301977.1 1417399 D 570508 CDS YP_002301978.1 210135539 7011101 1417796..1418086 1 NC_011498.1 hypothetical protein 1418086 7011101 HPP12_1348 Helicobacter pylori P12 hypothetical protein YP_002301978.1 1417796 D 570508 CDS YP_002301979.1 210135540 7011102 1418215..1418466 1 NC_011498.1 hypothetical protein 1418466 7011102 HPP12_1349 Helicobacter pylori P12 hypothetical protein YP_002301979.1 1418215 D 570508 CDS YP_002301980.1 210135541 7011103 1418394..1419248 1 NC_011498.1 hypothetical protein 1419248 7011103 HPP12_1350 Helicobacter pylori P12 hypothetical protein YP_002301980.1 1418394 D 570508 CDS YP_002301981.1 210135542 7011105 1421131..1421259 1 NC_011498.1 hypothetical protein 1421259 7011105 HPP12_1352 Helicobacter pylori P12 hypothetical protein YP_002301981.1 1421131 D 570508 CDS YP_002301982.1 210135543 7011106 complement(1421785..1423818) 1 NC_011498.1 relaxase 1423818 virD2-2 7011106 virD2-2 Helicobacter pylori P12 relaxase YP_002301982.1 1421785 R 570508 CDS YP_002301983.1 210135544 7011107 complement(1425436..1426257) 1 NC_011498.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1426257 nadC 7011107 nadC Helicobacter pylori P12 nicotinate-nucleotide pyrophosphorylase YP_002301983.1 1425436 R 570508 CDS YP_002301984.1 210135545 7011108 complement(1426257..1427267) 1 NC_011498.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1427267 nadA 7011108 nadA Helicobacter pylori P12 quinolinate synthetase YP_002301984.1 1426257 R 570508 CDS YP_002301985.1 210135546 7011109 complement(1427257..1428060) 1 NC_011498.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 1428060 psd 7011109 psd Helicobacter pylori P12 phosphatidylserine decarboxylase YP_002301985.1 1427257 R 570508 CDS YP_002301986.1 210135547 7011110 complement(1428054..1428560) 1 NC_011498.1 hypothetical protein 1428560 7011110 HPP12_1357 Helicobacter pylori P12 hypothetical protein YP_002301986.1 1428054 R 570508 CDS YP_002301987.1 210135548 7011111 complement(1428573..1429124) 1 NC_011498.1 hypothetical protein 1429124 7011111 HPP12_1358 Helicobacter pylori P12 hypothetical protein YP_002301987.1 1428573 R 570508 CDS YP_002301988.1 210135549 7011112 complement(1429060..1429944) 1 NC_011498.1 UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 1429944 ubiA 7011112 ubiA Helicobacter pylori P12 prenyltransferase YP_002301988.1 1429060 R 570508 CDS YP_002301989.1 210135550 7011113 complement(1429971..1431284) 1 NC_011498.1 competence locus E ComE3 1431284 comE 7011113 comE Helicobacter pylori P12 competence locus E ComE3 YP_002301989.1 1429971 R 570508 CDS YP_002301990.1 210135551 7011114 complement(1431281..1432741) 1 NC_011498.1 unwinds double stranded DNA; replicative DNA helicase 1432741 dnaB 7011114 dnaB Helicobacter pylori P12 replicative DNA helicase YP_002301990.1 1431281 R 570508 CDS YP_002301991.1 210135552 7011115 complement(1432752..1434146) 1 NC_011498.1 integral membrane protein 1434146 7011115 HPP12_1362 Helicobacter pylori P12 integral membrane protein YP_002301991.1 1432752 R 570508 CDS YP_002301992.1 210135553 7011116 complement(1434149..1435261) 1 NC_011498.1 histidine kinase sensor protein 1435261 7011116 HPP12_1363 Helicobacter pylori P12 histidine kinase sensor protein YP_002301992.1 1434149 R 570508 CDS YP_002301993.1 210135554 7011117 complement(1435317..1435958) 1 NC_011498.1 response regulator 1435958 7011117 HPP12_1364 Helicobacter pylori P12 response regulator YP_002301993.1 1435317 R 570508 CDS YP_002301994.1 210135555 7011118 1436023..1438488 1 NC_011498.1 type III R-M system methyltransferase 1438488 mod-3 7011118 mod-3 Helicobacter pylori P12 type III R-M system methyltransferase YP_002301994.1 1436023 D 570508 CDS YP_002301995.1 210135556 7011119 1438499..1441306 1 NC_011498.1 type III R-M system restriction enzyme 1441306 res-2 7011119 res-2 Helicobacter pylori P12 type III R-M system restriction enzyme YP_002301995.1 1438499 D 570508 CDS YP_002301996.1 210135557 7011120 complement(1441460..1442206) 1 NC_011498.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1442206 mreC 7011120 mreC Helicobacter pylori P12 rod shape-determining protein MreC YP_002301996.1 1441460 R 570508 CDS YP_002301997.1 210135558 7011121 complement(1442210..1443253) 1 NC_011498.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1443253 mreB 7011121 mreB Helicobacter pylori P12 rod shape-determining protein MreB YP_002301997.1 1442210 R 570508 CDS YP_002301998.1 210135559 7011122 complement(1443296..1444642) 1 NC_011498.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1444642 clpX 7011122 clpX Helicobacter pylori P12 ATP-dependent protease ATP-binding subunit ClpX YP_002301998.1 1443296 R 570508 CDS YP_002301999.1 210135560 7011123 complement(1444644..1445456) 1 NC_011498.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1445456 lpxA 7011123 lpxA Helicobacter pylori P12 UDP-N-acetylglucosamine acyltransferase YP_002301999.1 1444644 R 570508 CDS YP_002302000.1 210135561 7011124 complement(1445459..1445938) 1 NC_011498.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1445938 fabZ 7011124 fabZ Helicobacter pylori P12 (3R)-hydroxymyristoyl-ACP dehydratase YP_002302000.1 1445459 R 570508 CDS YP_002302001.1 210135562 7011125 complement(1446119..1446508) 1 NC_011498.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1446508 fliW-2 7011125 fliW-2 Helicobacter pylori P12 flagellar assembly protein FliW YP_002302001.1 1446119 R 570508 CDS YP_002302002.1 210135563 7011126 1446917..1447579 1 NC_011498.1 competence lipoprotein ComL 1447579 comL 7011126 comL Helicobacter pylori P12 competence lipoprotein ComL YP_002302002.1 1446917 D 570508 CDS YP_002302003.1 210135564 7011127 1447621..1450125 1 NC_011498.1 ATP-dependent protease Lon 1450125 lon 7011127 lon Helicobacter pylori P12 ATP-dependent protease Lon YP_002302003.1 1447621 D 570508 CDS YP_002302004.1 210135565 7011128 1450134..1450961 1 NC_011498.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1450961 tyrA 7011128 tyrA Helicobacter pylori P12 prephenate dehydrogenase YP_002302004.1 1450134 D 570508 CDS YP_002302005.1 210135566 7011129 complement(1451282..1452145) 1 NC_011498.1 endonuclease G 1452145 7011129 HPP12_1376 Helicobacter pylori P12 endonuclease G YP_002302005.1 1451282 R 570508 CDS YP_002302006.1 210135567 7011130 complement(1452411..1454288) 1 NC_011498.1 type III R-M system methyltransferase 1454288 mod-4 7011130 mod-4 Helicobacter pylori P12 type III R-M system methyltransferase YP_002302006.1 1452411 R 570508 CDS YP_002302007.1 210135568 7011132 1457029..1457877 1 NC_011498.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1457877 bioB 7011132 bioB Helicobacter pylori P12 biotin synthase YP_002302007.1 1457029 D 570508 CDS YP_002302008.1 210135569 7011133 1457877..1458755 1 NC_011498.1 ribonuclease N 1458755 rbn 7011133 rbn Helicobacter pylori P12 ribonuclease N YP_002302008.1 1457877 D 570508 CDS YP_002302009.1 210135570 7011136 1463709..1464203 1 NC_011498.1 hypothetical protein 1464203 7011136 HPP12_1381 Helicobacter pylori P12 hypothetical protein YP_002302009.1 1463709 D 570508 CDS YP_002302010.1 210135571 7011137 1464203..1465996 1 NC_011498.1 hypothetical protein 1465996 7011137 HPP12_1382 Helicobacter pylori P12 hypothetical protein YP_002302010.1 1464203 D 570508 CDS YP_002302011.1 210135572 7011138 1466136..1466765 1 NC_011498.1 hypothetical protein 1466765 7011138 HPP12_1383 Helicobacter pylori P12 hypothetical protein YP_002302011.1 1466136 D 570508 CDS YP_002302012.1 210135573 7011139 1466750..1467046 1 NC_011498.1 hypothetical protein 1467046 7011139 HPP12_1384 Helicobacter pylori P12 hypothetical protein YP_002302012.1 1466750 D 570508 CDS YP_002302013.1 210135574 7011140 complement(1467164..1467610) 1 NC_011498.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1467610 7011140 HPP12_1385 Helicobacter pylori P12 7-cyano-7-deazaguanine reductase YP_002302013.1 1467164 R 570508 CDS YP_002302014.1 210135575 7011141 1467670..1468011 1 NC_011498.1 hypothetical protein 1468011 7011141 HPP12_1386 Helicobacter pylori P12 hypothetical protein YP_002302014.1 1467670 D 570508 CDS YP_002302015.1 210135576 7011142 1468082..1468906 1 NC_011498.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1468906 miaA 7011142 miaA Helicobacter pylori P12 tRNA delta(2)-isopentenylpyrophosphate transferase YP_002302015.1 1468082 D 570508 CDS YP_002302016.1 210135577 7011143 1468918..1470027 1 NC_011498.1 lipopolysaccharide 1,2-glucosyltransferase 1470027 7011143 HPP12_1388 Helicobacter pylori P12 lipopolysaccharide 1,2-glucosyltransferase YP_002302016.1 1468918 D 570508 CDS YP_002302017.1 210135578 7011144 complement(1470038..1471000) 1 NC_011498.1 type II R-M system restriction endonuclease 1471000 7011144 HPP12_1389 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002302017.1 1470038 R 570508 CDS YP_002302018.1 210135579 7011145 complement(1470981..1471751) 1 NC_011498.1 type II R-M system restriction endonuclease 1471751 7011145 HPP12_1390 Helicobacter pylori P12 type II R-M system restriction endonuclease YP_002302018.1 1470981 R 570508 CDS YP_002302019.1 210135580 7011146 complement(1471841..1472620) 1 NC_011498.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1472620 murB 7011146 murB Helicobacter pylori P12 UDP-N-acetylenolpyruvoylglucosamine reductase YP_002302019.1 1471841 R 570508 CDS YP_002302020.1 210135581 7011147 complement(1472624..1472890) 1 NC_011498.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1472890 fliQ 7011147 fliQ Helicobacter pylori P12 flagellar biosynthesis protein FliQ YP_002302020.1 1472624 R 570508 CDS YP_002302021.1 210135582 7011148 complement(1472901..1474205) 1 NC_011498.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1474205 fliI 7011148 fliI Helicobacter pylori P12 flagellum-specific ATP synthase YP_002302021.1 1472901 R 570508 CDS YP_002302022.1 210135583 7011149 complement(1474206..1475120) 1 NC_011498.1 type IV secretion system ATPase 1475120 virB11-4 7011149 virB11-4 Helicobacter pylori P12 type IV secretion system ATPase YP_002302022.1 1474206 R 570508 CDS YP_002302023.1 210135584 7011150 complement(1475137..1477899) 1 NC_011498.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1477899 ileS 7011150 ileS Helicobacter pylori P12 isoleucyl-tRNA synthetase YP_002302023.1 1475137 R 570508 CDS YP_002302024.1 210135585 7011151 complement(1477924..1478178) 1 NC_011498.1 hypothetical protein 1478178 7011151 HPP12_1396 Helicobacter pylori P12 hypothetical protein YP_002302024.1 1477924 R 570508 CDS YP_002302025.1 210135586 7011152 1478280..1478900 1 NC_011498.1 hypothetical protein 1478900 7011152 HPP12_1397 Helicobacter pylori P12 hypothetical protein YP_002302025.1 1478280 D 570508 CDS YP_002302026.1 210135587 7011153 complement(1479129..1479917) 1 NC_011498.1 hypothetical protein 1479917 7011153 HPP12_1398 Helicobacter pylori P12 hypothetical protein YP_002302026.1 1479129 R 570508 CDS YP_002302027.1 210135588 7011154 complement(1480154..1480375) 1 NC_011498.1 hypothetical protein 1480375 7011154 HPP12_1399 Helicobacter pylori P12 hypothetical protein YP_002302027.1 1480154 R 570508 CDS YP_002302028.1 210135589 7011155 complement(1480562..1481635) 1 NC_011498.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1481635 7011155 HPP12_1400 Helicobacter pylori P12 ribosomal RNA large subunit methyltransferase N YP_002302028.1 1480562 R 570508 CDS YP_002302029.1 210135590 7011156 complement(1481632..1482621) 1 NC_011498.1 polysialic acid capsule expression protein 1482621 7011156 HPP12_1401 Helicobacter pylori P12 polysialic acid capsule expression protein YP_002302029.1 1481632 R 570508 CDS YP_002302030.1 210135591 7011157 complement(1482605..1484680) 1 NC_011498.1 ATP/GTP binding protein 1484680 7011157 HPP12_1402 Helicobacter pylori P12 ATP/GTP binding protein YP_002302030.1 1482605 R 570508 CDS YP_002302031.1 210135592 7011158 complement(1484718..1485533) 1 NC_011498.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1485533 ksgA 7011158 ksgA Helicobacter pylori P12 dimethyladenosine transferase YP_002302031.1 1484718 R 570508 CDS YP_002302032.1 210135593 7011159 1485796..1486032 1 NC_011498.1 histidine and glutamine-rich metal binding protein 1486032 7011159 HPP12_1404 Helicobacter pylori P12 histidine and glutamine-rich metal binding protein YP_002302032.1 1485796 D 570508 CDS YP_002302033.1 210135594 7011160 1485806..1486078 1 NC_011498.1 hypothetical protein 1486078 7011160 HPP12_1405 Helicobacter pylori P12 hypothetical protein YP_002302033.1 1485806 D 570508 CDS YP_002302034.1 210135595 7011161 1486320..1486451 1 NC_011498.1 hypothetical protein 1486451 7011161 HPP12_1406 Helicobacter pylori P12 hypothetical protein YP_002302034.1 1486320 D 570508 CDS YP_002302035.1 210135596 7011162 complement(1486667..1487452) 1 NC_011498.1 hypothetical protein 1487452 7011162 HPP12_1407 Helicobacter pylori P12 hypothetical protein YP_002302035.1 1486667 R 570508 CDS YP_002302036.1 210135597 7011163 complement(1487452..1489119) 1 NC_011498.1 hypothetical protein 1489119 7011163 HPP12_1408 Helicobacter pylori P12 hypothetical protein YP_002302036.1 1487452 R 570508 CDS YP_002302037.1 210135598 7011164 complement(1489120..1490001) 1 NC_011498.1 formyltetrahydrofolate hydrolase 1490001 purU 7011164 purU Helicobacter pylori P12 formyltetrahydrofolate hydrolase YP_002302037.1 1489120 R 570508 CDS YP_002302038.1 210135599 7011165 complement(1490004..1490882) 1 NC_011498.1 signal peptide protease IV 1490882 sppA 7011165 sppA Helicobacter pylori P12 signal peptide protease IV YP_002302038.1 1490004 R 570508 CDS YP_002302039.1 210135600 7011166 1490953..1491225 1 NC_011498.1 hypothetical protein 1491225 7011166 HPP12_1411 Helicobacter pylori P12 hypothetical protein YP_002302039.1 1490953 D 570508 CDS YP_002302040.1 210135601 7011167 1491430..1491636 1 NC_011498.1 hypothetical protein 1491636 7011167 HPP12_1412 Helicobacter pylori P12 hypothetical protein YP_002302040.1 1491430 D 570508 CDS YP_002302041.1 210135602 7011168 1491623..1492150 1 NC_011498.1 hypothetical protein 1492150 7011168 HPP12_1413 Helicobacter pylori P12 hypothetical protein YP_002302041.1 1491623 D 570508 CDS YP_002302042.1 210135603 7011169 1492159..1492494 1 NC_011498.1 hypothetical protein 1492494 7011169 HPP12_1414 Helicobacter pylori P12 hypothetical protein YP_002302042.1 1492159 D 570508 CDS YP_002302043.1 210135604 7011170 1492527..1492652 1 NC_011498.1 hypothetical protein 1492652 7011170 HPP12_1415 Helicobacter pylori P12 hypothetical protein YP_002302043.1 1492527 D 570508 CDS YP_002302044.1 210135605 7011171 1492663..1492809 1 NC_011498.1 hypothetical protein 1492809 7011171 HPP12_1416 Helicobacter pylori P12 hypothetical protein YP_002302044.1 1492663 D 570508 CDS YP_002302045.1 210135606 7011172 1492790..1493122 1 NC_011498.1 hypothetical protein 1493122 7011172 HPP12_1417 Helicobacter pylori P12 hypothetical protein YP_002302045.1 1492790 D 570508 CDS YP_002302046.1 210135607 7011174 complement(1496425..1497060) 1 NC_011498.1 hypothetical protein 1497060 7011174 HPP12_1418 Helicobacter pylori P12 hypothetical protein YP_002302046.1 1496425 R 570508 CDS YP_002302047.1 210135608 7011175 1497329..1497817 1 NC_011498.1 peptidyl-prolyl cis-trans isomerase B 1497817 ppiA 7011175 ppiA Helicobacter pylori P12 peptidyl-prolyl cis-trans isomerase B YP_002302047.1 1497329 D 570508 CDS YP_002302048.1 210135609 7011176 1497836..1498066 1 NC_011498.1 affects carbohydrate metabolism, has regulatory role in many processes; carbon storage regulator 1498066 csrA 7011176 csrA Helicobacter pylori P12 carbon storage regulator YP_002302048.1 1497836 D 570508 CDS YP_002302049.1 210135610 7011177 1498067..1498870 1 NC_011498.1 catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1498870 7011177 HPP12_1421 Helicobacter pylori P12 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_002302049.1 1498067 D 570508 CDS YP_002302050.1 210135611 7011178 1498867..1499325 1 NC_011498.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1499325 smpB 7011178 smpB Helicobacter pylori P12 SsrA-binding protein YP_002302050.1 1498867 D 570508 CDS YP_002302051.1 210135612 7011179 1499328..1499780 1 NC_011498.1 biopolymer transport protein ExbB 1499780 exbB-3 7011179 exbB-3 Helicobacter pylori P12 biopolymer transport protein ExbB YP_002302051.1 1499328 D 570508 CDS YP_002302052.1 210135613 7011180 1499791..1500192 1 NC_011498.1 biopolymer transport protein ExbD 1500192 exbD-3 7011180 exbD-3 Helicobacter pylori P12 biopolymer transport protein ExbD YP_002302052.1 1499791 D 570508 CDS YP_002302053.1 210135614 7011181 1500358..1500843 1 NC_011498.1 ribonuclease P protein component 1500843 rnpA 7011181 rnpA Helicobacter pylori P12 ribonuclease P protein component YP_002302053.1 1500358 D 570508 CDS YP_002302054.1 210135615 7011182 1500830..1501186 1 NC_011498.1 hypothetical protein 1501186 7011182 HPP12_1426 Helicobacter pylori P12 hypothetical protein YP_002302054.1 1500830 D 570508 CDS YP_002302055.1 210135616 7011183 1501192..1502832 1 NC_011498.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 1502832 yidC 7011183 yidC Helicobacter pylori P12 putative inner membrane protein translocase component YidC YP_002302055.1 1501192 D 570508 CDS YP_002302056.1 210135617 7011184 1502832..1503626 1 NC_011498.1 VirB11-interacting protein 1503626 7011184 HPP12_1428 Helicobacter pylori P12 VirB11-interacting protein YP_002302056.1 1502832 D 570508 CDS YP_002302057.1 210135618 7011185 1503586..1504971 1 NC_011498.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1504971 trmE 7011185 trmE Helicobacter pylori P12 tRNA modification GTPase TrmE YP_002302057.1 1503586 D 570508 CDS YP_002302058.1 210135619 7011186 1505177..1507417 1 NC_011498.1 outer membrane protein HomD 1507417 homD 7011186 homD Helicobacter pylori P12 outer membrane protein HomD YP_002302058.1 1505177 D 570508 CDS YP_002302059.1 210135620 7011187 complement(1507434..1507625) 1 NC_011498.1 hypothetical protein 1507625 7011187 HPP12_1431 Helicobacter pylori P12 hypothetical protein YP_002302059.1 1507434 R 570508 CDS YP_002302060.1 210135621 7011188 complement(1508237..1509148) 1 NC_011498.1 hypothetical protein 1509148 7011188 HPP12_1432 Helicobacter pylori P12 hypothetical protein YP_002302060.1 1508237 R 570508 CDS YP_002302061.1 210135622 7011189 complement(1509158..1509499) 1 NC_011498.1 hypothetical protein 1509499 7011189 HPP12_1433 Helicobacter pylori P12 hypothetical protein YP_002302061.1 1509158 R 570508 CDS YP_002302062.1 210135623 7011190 complement(1509507..1510034) 1 NC_011498.1 membrane-associated lipoprotein 1510034 7011190 HPP12_1434 Helicobacter pylori P12 membrane-associated lipoprotein YP_002302062.1 1509507 R 570508 CDS YP_002302063.1 210135624 7011191 complement(1510058..1510690) 1 NC_011498.1 hypothetical protein 1510690 7011191 HPP12_1435 Helicobacter pylori P12 hypothetical protein YP_002302063.1 1510058 R 570508 CDS YP_002302064.1 210135625 7011192 complement(1511106..1511420) 1 NC_011498.1 thioredoxin 1511420 7011192 HPP12_1436 Helicobacter pylori P12 thioredoxin YP_002302064.1 1511106 R 570508 CDS YP_002302065.1 210135626 7011193 complement(1511475..1512263) 1 NC_011498.1 ribosomal large subunit pseudouridine synthase B 1512263 7011193 HPP12_1437 Helicobacter pylori P12 ribosomal large subunit pseudouridine synthase B YP_002302065.1 1511475 R 570508 CDS YP_002302066.1 210135627 7011194 complement(1512245..1515880) 1 NC_011498.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1515880 dnaE 7011194 dnaE Helicobacter pylori P12 DNA polymerase III subunit alpha YP_002302066.1 1512245 R 570508 CDS YP_002302067.1 210135628 7011195 1516028..1517080 1 NC_011498.1 cytochrome C551 peroxidase 1517080 7011195 HPP12_1439 Helicobacter pylori P12 cytochrome C551 peroxidase YP_002302067.1 1516028 D 570508 CDS YP_002302068.1 210135629 7011196 complement(1517259..1517846) 1 NC_011498.1 secreted motility protein 1517846 7011196 HPP12_1440 Helicobacter pylori P12 secreted motility protein YP_002302068.1 1517259 R 570508 CDS YP_002302069.1 210135630 7011197 complement(1517863..1518540) 1 NC_011498.1 hypothetical protein 1518540 7011197 HPP12_1441 Helicobacter pylori P12 hypothetical protein YP_002302069.1 1517863 R 570508 CDS YP_002302070.1 210135631 7011198 complement(1518543..1519358) 1 NC_011498.1 ABC transporter substrate binding protein 1519358 7011198 HPP12_1442 Helicobacter pylori P12 ABC transporter substrate binding protein YP_002302070.1 1518543 R 570508 CDS YP_002302071.1 210135632 7011199 complement(1519343..1520128) 1 NC_011498.1 ABC transporter ATP-binding protein 1520128 7011199 HPP12_1443 Helicobacter pylori P12 ABC transporter ATP-binding protein YP_002302071.1 1519343 R 570508 CDS YP_002302072.1 210135633 7011200 complement(1520128..1521261) 1 NC_011498.1 ABC transporter permease protein 1521261 7011200 HPP12_1444 Helicobacter pylori P12 ABC transporter permease protein YP_002302072.1 1520128 R 570508 CDS YP_002302073.1 210135634 7011201 1521395..1522090 1 NC_011498.1 outer membrane protein 1522090 7011201 HPP12_1445 Helicobacter pylori P12 outer membrane protein YP_002302073.1 1521395 D 570508 CDS YP_002302074.1 210135635 7011202 complement(1522095..1523117) 1 NC_011498.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1523117 ilvE 7011202 ilvE Helicobacter pylori P12 branched-chain amino acid aminotransferase YP_002302074.1 1522095 R 570508 CDS YP_002302075.1 210135636 7011203 complement(1523166..1523912) 1 NC_011498.1 outer membrane protein HorJ 1523912 horJ 7011203 horJ Helicobacter pylori P12 outer membrane protein HorJ YP_002302075.1 1523166 R 570508 CDS YP_002302076.1 210135637 7011204 complement(1524027..1526738) 1 NC_011498.1 DNA polymerase I 1526738 polA 7011204 polA Helicobacter pylori P12 DNA polymerase I YP_002302076.1 1524027 R 570508 CDS YP_002302077.1 210135638 7011205 complement(1526804..1528045) 1 NC_011498.1 type IIS R-M system restriction enzyme 1528045 7011205 HPP12_1449 Helicobacter pylori P12 type IIS R-M system restriction enzyme YP_002302077.1 1526804 R 570508 CDS YP_002302078.1 210135639 7011206 complement(1528042..1530078) 1 NC_011498.1 type IIS R-M system methyltransferase 1530078 7011206 HPP12_1450 Helicobacter pylori P12 type IIS R-M system methyltransferase YP_002302078.1 1528042 R 570508 CDS YP_002302079.1 210135640 7011207 complement(1530112..1530687) 1 NC_011498.1 amidophosphoribosyltransferase 1530687 7011207 HPP12_1451 Helicobacter pylori P12 amidophosphoribosyltransferase YP_002302079.1 1530112 R 570508 CDS YP_002302080.1 210135641 7011208 complement(1530675..1531250) 1 NC_011498.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1531250 tmk 7011208 tmk Helicobacter pylori P12 thymidylate kinase YP_002302080.1 1530675 R 570508 CDS YP_002302081.1 210135642 7011209 complement(1531252..1531725) 1 NC_011498.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1531725 coaD 7011209 coaD Helicobacter pylori P12 phosphopantetheine adenylyltransferase YP_002302081.1 1531252 R 570508 CDS YP_002302082.1 210135643 7011210 complement(1531725..1532288) 1 NC_011498.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1532288 ubiD 7011210 ubiD Helicobacter pylori P12 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_002302082.1 1531725 R 570508 CDS YP_002302083.1 210135644 7011211 complement(1532298..1532954) 1 NC_011498.1 required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1532954 flgA 7011211 flgA Helicobacter pylori P12 flagellar basal body P-ring biosynthesis protein FlgA YP_002302083.1 1532298 R 570508 CDS YP_002302084.1 210135645 7011212 complement(1532951..1534996) 1 NC_011498.1 DNA helicase II 1534996 7011212 HPP12_1456 Helicobacter pylori P12 DNA helicase II YP_002302084.1 1532951 R 570508 CDS YP_002302085.1 210135646 7011213 complement(1534996..1537530) 1 NC_011498.1 hypothetical protein 1537530 7011213 HPP12_1457 Helicobacter pylori P12 hypothetical protein YP_002302085.1 1534996 R 570508 CDS YP_002302086.1 210135647 7011214 complement(1537540..1538787) 1 NC_011498.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1538787 serS 7011214 serS Helicobacter pylori P12 seryl-tRNA synthetase YP_002302086.1 1537540 R 570508 CDS YP_002302087.1 210135648 7011215 complement(1538788..1539585) 1 NC_011498.1 hypothetical protein 1539585 7011215 HPP12_1459 Helicobacter pylori P12 hypothetical protein YP_002302087.1 1538788 R 570508 CDS YP_002302088.1 210135649 7011216 complement(1539589..1539840) 1 NC_011498.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1539840 7011216 HPP12_1460 Helicobacter pylori P12 exodeoxyribonuclease VII small subunit YP_002302088.1 1539589 R 570508 CDS YP_002302089.1 210135650 7011217 complement(1539850..1540590) 1 NC_011498.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1540590 ubiE 7011217 ubiE Helicobacter pylori P12 ubiquinone/menaquinone biosynthesis methyltransferase YP_002302089.1 1539850 R 570508 CDS YP_002302090.1 210135651 7011218 complement(1540617..1541063) 1 NC_011498.1 integral membrane protein 1541063 7011218 HPP12_1462 Helicobacter pylori P12 integral membrane protein YP_002302090.1 1540617 R 570508 CDS YP_002302091.1 210135652 7011219 complement(1541074..1541646) 1 NC_011498.1 hypothetical protein 1541646 7011219 HPP12_1463 Helicobacter pylori P12 hypothetical protein YP_002302091.1 1541074 R 570508 CDS YP_002302092.1 210135653 7011220 complement(1541633..1542763) 1 NC_011498.1 ABC-2 type transport system permease protein 1542763 7011220 HPP12_1464 Helicobacter pylori P12 ABC-2 type transport system permease protein YP_002302092.1 1541633 R 570508 CDS YP_002302093.1 210135654 7011221 complement(1542760..1543857) 1 NC_011498.1 ABC-2 type transport system permease protein 1543857 7011221 HPP12_1465 Helicobacter pylori P12 ABC-2 type transport system permease protein YP_002302093.1 1542760 R 570508 CDS YP_002302094.1 210135655 7011222 complement(1543869..1544858) 1 NC_011498.1 secreted protein 1544858 7011222 HPP12_1466 Helicobacter pylori P12 secreted protein YP_002302094.1 1543869 R 570508 CDS YP_002302095.1 210135656 7011223 complement(1544870..1546402) 1 NC_011498.1 outer membrane efflux protein 1546402 7011223 HPP12_1467 Helicobacter pylori P12 outer membrane efflux protein YP_002302095.1 1544870 R 570508 CDS YP_002302096.1 210135657 7011224 complement(1546418..1547755) 1 NC_011498.1 integral membrane protein; hemolysin domain-containing protein 1547755 7011224 HPP12_1468 Helicobacter pylori P12 hemolysin domain-containing protein YP_002302096.1 1546418 R 570508 CDS YP_002302097.1 210135658 7011225 complement(1547858..1549459) 1 NC_011498.1 phosphate permease 1549459 7011225 HPP12_1469 Helicobacter pylori P12 phosphate permease YP_002302097.1 1547858 R 570508 CDS YP_002302098.1 210135659 7011226 1549600..1549869 1 NC_011498.1 nifu-like protein 1549869 7011226 HPP12_1470 Helicobacter pylori P12 nifu-like protein YP_002302098.1 1549600 D 570508 CDS YP_002302099.1 210135660 7011227 1549881..1550492 1 NC_011498.1 hypothetical protein 1550492 7011227 HPP12_1471 Helicobacter pylori P12 hypothetical protein YP_002302099.1 1549881 D 570508 CDS YP_002302100.1 210135661 7011228 1550496..1551839 1 NC_011498.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1551839 murE 7011228 murE Helicobacter pylori P12 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_002302100.1 1550496 D 570508 CDS YP_002302101.1 210135662 7011229 1551842..1552792 1 NC_011498.1 Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase 1552792 tal 7011229 tal Helicobacter pylori P12 transaldolase YP_002302101.1 1551842 D 570508 CDS YP_002302102.1 210135663 7011230 1552847..1553383 1 NC_011498.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1553383 rplY 7011230 rplY Helicobacter pylori P12 50S ribosomal protein L25/general stress protein Ctc YP_002302102.1 1552847 D 570508 CDS YP_002302103.1 210135664 7011231 1553393..1553953 1 NC_011498.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1553953 pth 7011231 pth Helicobacter pylori P12 peptidyl-tRNA hydrolase YP_002302103.1 1553393 D 570508 CDS YP_002302104.1 210135665 7011232 1553963..1555030 1 NC_011498.1 hypothetical protein 1555030 7011232 HPP12_1476 Helicobacter pylori P12 hypothetical protein YP_002302104.1 1553963 D 570508 CDS YP_002302105.1 210135666 7011233 1555145..1556065 1 NC_011498.1 hypothetical protein 1556065 7011233 HPP12_1477 Helicobacter pylori P12 hypothetical protein YP_002302105.1 1555145 D 570508 CDS YP_002302106.1 210135667 7011234 1556142..1557437 1 NC_011498.1 restriction endonuclease 1557437 7011234 HPP12_1478 Helicobacter pylori P12 restriction endonuclease YP_002302106.1 1556142 D 570508 CDS YP_002302107.1 210135668 7011235 complement(1557615..1558781) 1 NC_011498.1 outer membrane protein HorK 1558781 horK 7011235 horK Helicobacter pylori P12 outer membrane protein HorK YP_002302107.1 1557615 R 570508 CDS YP_002302108.1 210135669 7011236 1558961..1559398 1 NC_011498.1 hypothetical protein 1559398 7011236 HPP12_1480 Helicobacter pylori P12 hypothetical protein YP_002302108.1 1558961 D 570508 CDS YP_002302109.1 210135670 7011237 complement(1559395..1561746) 1 NC_011498.1 cation transporting P-type ATPase 1561746 fixI 7011237 fixI Helicobacter pylori P12 cation transporting P-type ATPase YP_002302109.1 1559395 R 570508 CDS YP_002302110.1 210135671 7011238 complement(1561771..1562487) 1 NC_011498.1 hypothetical protein 1562487 7011238 HPP12_1482 Helicobacter pylori P12 hypothetical protein YP_002302110.1 1561771 R 570508 CDS YP_002302111.1 210135672 7011239 complement(1562469..1563503) 1 NC_011498.1 riboflavin biosynthesis protein 1563503 7011239 HPP12_1483 Helicobacter pylori P12 riboflavin biosynthesis protein YP_002302111.1 1562469 R 570508 CDS YP_002302112.1 210135673 7011240 complement(1563500..1564726) 1 NC_011498.1 sodium/glutamate symport carrier protein 1564726 gltS 7011240 gltS Helicobacter pylori P12 sodium/glutamate symport carrier protein YP_002302112.1 1563500 R 570508 CDS YP_002302113.1 210135674 7011241 1564812..1566011 1 NC_011498.1 saccharopine dehydrogenase 1566011 7011241 HPP12_1485 Helicobacter pylori P12 saccharopine dehydrogenase YP_002302113.1 1564812 D 570508 CDS YP_002302114.1 210135675 7011242 complement(1566021..1567397) 1 NC_011498.1 ferredoxin-like protein 1567397 7011242 HPP12_1486 Helicobacter pylori P12 ferredoxin-like protein YP_002302114.1 1566021 R 570508 CDS YP_002302115.1 210135676 7011243 1567377..1568165 1 NC_011498.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1568165 7011243 HPP12_1487 Helicobacter pylori P12 putative glycerol-3-phosphate acyltransferase PlsY YP_002302115.1 1567377 D 570508 CDS YP_002302116.1 210135677 7011244 1568162..1568515 1 NC_011498.1 dihydroneopterin aldolase 1568515 folB 7011244 folB Helicobacter pylori P12 dihydroneopterin aldolase YP_002302116.1 1568162 D 570508 CDS YP_002302117.1 210135678 7011245 1568499..1568825 1 NC_011498.1 frpb-like protein 1568825 7011245 HPP12_1489 Helicobacter pylori P12 frpb-like protein YP_002302117.1 1568499 D 570508 CDS YP_002302118.1 210135679 7011246 1568979..1571612 1 NC_011498.1 iron-regulated outer membrane protein 1571612 frpB-4 7011246 frpB-4 Helicobacter pylori P12 iron-regulated outer membrane protein YP_002302118.1 1568979 D 570508 CDS YP_002302119.1 210135680 7011247 1571840..1573012 1 NC_011498.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1573012 selA 7011247 selA Helicobacter pylori P12 selenocysteine synthase YP_002302119.1 1571840 D 570508 CDS YP_002302120.1 210135681 7011248 1573109..1574296 1 NC_011498.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1574296 nusA 7011248 nusA Helicobacter pylori P12 transcription elongation factor NusA YP_002302120.1 1573109 D 570508 CDS YP_002302121.1 210135682 7011249 1574353..1574847 1 NC_011498.1 hypothetical protein 1574847 7011249 HPP12_1493 Helicobacter pylori P12 hypothetical protein YP_002302121.1 1574353 D 570508 CDS YP_002302122.1 210135683 7011250 complement(1575820..1579728) 1 NC_011498.1 type IIS R-M system restriction/modification enzyme 1579728 7011250 HPP12_1494 Helicobacter pylori P12 type IIS R-M system restriction/modification enzyme YP_002302122.1 1575820 R 570508 CDS YP_002302123.1 210135684 7011251 complement(1580020..1582023) 1 NC_011498.1 hypothetical protein 1582023 7011251 HPP12_1495 Helicobacter pylori P12 hypothetical protein YP_002302123.1 1580020 R 570508 CDS YP_002302124.1 210135685 7011252 complement(1582157..1585066) 1 NC_011498.1 type III R-M system restriction enzyme 1585066 res-4 7011252 res-4 Helicobacter pylori P12 type III R-M system restriction enzyme YP_002302124.1 1582157 R 570508 CDS YP_002302125.1 210135686 7011253 complement(1585069..1587111) 1 NC_011498.1 type III R-M system methyltransferase 1587111 mod-5 7011253 mod-5 Helicobacter pylori P12 type III R-M system methyltransferase YP_002302125.1 1585069 R 570508 CDS YP_002302126.1 210135687 7011254 complement(1587160..1589031) 1 NC_011498.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1589031 recG 7011254 recG Helicobacter pylori P12 ATP-dependent DNA helicase RecG YP_002302126.1 1587160 R 570508 CDS YP_002302127.1 210135688 7011255 1589113..1589460 1 NC_011498.1 hypothetical protein 1589460 7011255 HPP12_1499 Helicobacter pylori P12 hypothetical protein YP_002302127.1 1589113 D 570508 CDS YP_002302128.1 210135689 7011256 1589464..1590099 1 NC_011498.1 hypothetical protein 1590099 7011256 HPP12_1500 Helicobacter pylori P12 hypothetical protein YP_002302128.1 1589464 D 570508 CDS YP_002302129.1 210135690 7011257 complement(1590096..1590848) 1 NC_011498.1 AP endonuclease xth family; multifunctional DNA repair protein; has AP endonuclease, 3'-5' exonuclease, ribonuclease H, and 3'-phosphomonoesterase activities.; exodeoxyribonuclease III 1590848 exoA 7011257 exoA Helicobacter pylori P12 exodeoxyribonuclease III YP_002302129.1 1590096 R 570508 CDS YP_002302130.1 210135691 7011259 complement(1591028..1592458) 1 NC_011498.1 periplasmic competence protein comh 1592458 7011259 HPP12_1502 Helicobacter pylori P12 periplasmic competence protein comh YP_002302130.1 1591028 R 570508 CDS YP_002302131.1 210135692 7011260 complement(1592687..1594054) 1 NC_011498.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1594054 dnaA 7011260 dnaA Helicobacter pylori P12 chromosomal replication initiation protein YP_002302131.1 1592687 R 570508 CDS YP_002302132.1 210135693 7011261 1594207..1594749 1 NC_011498.1 purine nucleoside phosphorylase 1594749 7011261 HPP12_1504 Helicobacter pylori P12 purine nucleoside phosphorylase YP_002302132.1 1594207 D 570508 CDS YP_002302133.1 210135694 7011262 1594792..1595031 1 NC_011498.1 hypothetical protein 1595031 7011262 HPP12_1505 Helicobacter pylori P12 hypothetical protein YP_002302133.1 1594792 D 570508 CDS YP_002302134.1 210135695 7011263 1595032..1596825 1 NC_011498.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1596825 glmS 7011263 glmS Helicobacter pylori P12 glucosamine--fructose-6-phosphate aminotransferase YP_002302134.1 1595032 D 570508 CDS YP_002302135.1 210135696 7011264 1596847..1597479 1 NC_011498.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 1597479 thyX 7011264 thyX Helicobacter pylori P12 FAD-dependent thymidylate synthase YP_002302135.1 1596847 D 570508 CDS YP_002302136.1 210135697 7011265 complement(1598131..1599339) 1 NC_011498.1 type I R-M system S protein 1599339 hsdS-4 7011265 hsdS-4 Helicobacter pylori P12 type I R-M system S protein YP_002302136.1 1598131 R 570508 CDS YP_002302137.1 210135698 7011266 complement(1599336..1601786) 1 NC_011498.1 type I R-M system M protein 1601786 hsdM-3 7011266 hsdM-3 Helicobacter pylori P12 type I R-M system M protein YP_002302137.1 1599336 R 570508 CDS YP_002302138.1 210135699 7011268 1604830..1605537 1 NC_011498.1 hypothetical protein 1605537 7011268 HPP12_1511 Helicobacter pylori P12 hypothetical protein YP_002302138.1 1604830 D 570508 CDS YP_002302139.1 210135700 7011270 complement(1608504..1609472) 1 NC_011498.1 arginase 1609472 rocF 7011270 rocF Helicobacter pylori P12 arginase YP_002302139.1 1608504 R 570508 CDS YP_002302140.1 210135701 7011271 1609676..1610818 1 NC_011498.1 alanine dehydrogenase 1610818 ald 7011271 ald Helicobacter pylori P12 alanine dehydrogenase YP_002302140.1 1609676 D 570508 CDS YP_002302141.1 210135702 7011272 1610933..1611604 1 NC_011498.1 hypothetical protein 1611604 7011272 HPP12_1515 Helicobacter pylori P12 hypothetical protein YP_002302141.1 1610933 D 570508 CDS YP_002302142.1 210135703 7011273 1611582..1612331 1 NC_011498.1 hypothetical protein 1612331 7011273 HPP12_1516 Helicobacter pylori P12 hypothetical protein YP_002302142.1 1611582 D 570508 CDS YP_002302143.1 210135704 7011274 1612482..1612661 1 NC_011498.1 hypothetical protein 1612661 7011274 HPP12_1517 Helicobacter pylori P12 hypothetical protein YP_002302143.1 1612482 D 570508 CDS YP_002302144.1 210135705 7011275 complement(1612672..1613400) 1 NC_011498.1 outer membrane protein HorL 1613400 horL 7011275 horL Helicobacter pylori P12 outer membrane protein HorL YP_002302144.1 1612672 R 570508 CDS YP_002302145.1 210135706 7011276 1613587..1614441 1 NC_011498.1 inorganic polyphosphate/ATP-NAD kinase 1614441 7011276 HPP12_1519 Helicobacter pylori P12 inorganic polyphosphate/ATP-NAD kinase YP_002302145.1 1613587 D 570508 CDS YP_002302146.1 210135707 7011277 1614458..1616032 1 NC_011498.1 DNA repair protein RecN 1616032 recN 7011277 recN Helicobacter pylori P12 DNA repair protein RecN YP_002302146.1 1614458 D 570508 CDS YP_002302147.1 210135708 7011278 1616029..1617336 1 NC_011498.1 fibronectin/fibrinogen-binding protein 1617336 7011278 HPP12_1521 Helicobacter pylori P12 fibronectin/fibrinogen-binding protein YP_002302147.1 1616029 D 570508 CDS YP_002302148.1 210135709 7011279 1617355..1617651 1 NC_011498.1 hypothetical protein 1617651 7011279 HPP12_1522 Helicobacter pylori P12 hypothetical protein YP_002302148.1 1617355 D 570508 CDS YP_002302149.1 210135710 7011280 complement(1617938..1618852) 1 NC_011498.1 type II R-M system methyltransferase 1618852 7011280 HPP12_1523 Helicobacter pylori P12 type II R-M system methyltransferase YP_002302149.1 1617938 R 570508 CDS YP_002302150.1 210135711 7011281 complement(1618865..1619068) 1 NC_011498.1 hypothetical protein 1619068 7011281 HPP12_1524 Helicobacter pylori P12 hypothetical protein YP_002302150.1 1618865 R 570508 CDS YP_002302151.1 210135712 7011282 complement(1619068..1619940) 1 NC_011498.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1619940 fbp 7011282 fbp Helicobacter pylori P12 fructose-1,6-bisphosphatase YP_002302151.1 1619068 R 570508 CDS YP_002302152.1 210135713 7011283 1620011..1620664 1 NC_011498.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1620664 rpe 7011283 rpe Helicobacter pylori P12 ribulose-phosphate 3-epimerase YP_002302152.1 1620011 D 570508 CDS YP_002302153.1 210135714 7011284 1620534..1621505 1 NC_011498.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1621505 7011284 HPP12_1527 Helicobacter pylori P12 DNA polymerase III subunit epsilon YP_002302153.1 1620534 D 570508 CDS YP_002302154.1 210135715 7011285 complement(1621688..1622248) 1 NC_011498.1 hypothetical protein 1622248 7011285 HPP12_1528 Helicobacter pylori P12 hypothetical protein YP_002302154.1 1621688 R 570508 CDS YP_002302155.1 210135716 7011286 complement(1622491..1623558) 1 NC_011498.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1623558 tsf 7011286 tsf Helicobacter pylori P12 elongation factor Ts YP_002302155.1 1622491 R 570508 CDS YP_002302156.1 210135717 7011287 complement(1623558..1624352) 1 NC_011498.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1624352 rpsB 7011287 rpsB Helicobacter pylori P12 30S ribosomal protein S2 YP_002302156.1 1623558 R 570508 CDS YP_002302157.1 210135718 7011288 1624603..1627443 1 NC_011498.1 putative recombination protein RecB 1627443 pcrA 7011288 pcrA Helicobacter pylori P12 putative recombination protein RecB YP_002302157.1 1624603 D 570508 CDS YP_002302158.1 210135719 7011289 1627467..1628783 1 NC_011498.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1628783 nhaA 7011289 nhaA Helicobacter pylori P12 pH-dependent sodium/proton antiporter YP_002302158.1 1627467 D 570508 CDS YP_002302159.1 210135720 7011290 1628831..1629214 1 NC_011498.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1629214 yajC 7011290 yajC Helicobacter pylori P12 preprotein translocase subunit YajC YP_002302159.1 1628831 D 570508 CDS YP_002302160.1 210135721 7011291 1629211..1630788 1 NC_011498.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1630788 secD 7011291 secD Helicobacter pylori P12 preprotein translocase subunit SecD YP_002302160.1 1629211 D 570508 CDS YP_002302161.1 210135722 7011292 1630797..1631768 1 NC_011498.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1631768 secF 7011292 secF Helicobacter pylori P12 preprotein translocase subunit SecF YP_002302161.1 1630797 D 570508 CDS YP_002302162.1 210135723 7011293 1631778..1632116 1 NC_011498.1 integral membrane protein 1632116 7011293 HPP12_1536 Helicobacter pylori P12 integral membrane protein YP_002302162.1 1631778 D 570508 CDS YP_002302163.1 210135724 7011294 1632126..1634546 1 NC_011498.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1634546 leuS 7011294 leuS Helicobacter pylori P12 leucyl-tRNA synthetase YP_002302163.1 1632126 D 570508 CDS YP_002302164.1 210135725 7011295 1634543..1635055 1 NC_011498.1 hypothetical protein 1635055 7011295 HPP12_1538 Helicobacter pylori P12 hypothetical protein YP_002302164.1 1634543 D 570508 CDS YP_002302165.1 210135726 7011296 1635045..1636214 1 NC_011498.1 bifunctional folylpolyglutamate synthase / dihydrofolate synthase 1636214 folC 7011296 folC Helicobacter pylori P12 bifunctional folylpolyglutamate synthase / dihydrofolate synthase YP_002302165.1 1635045 D 570508 CDS YP_002302166.1 210135727 7011297 1636214..1637140 1 NC_011498.1 membrane-bound metallopeptidase 1637140 7011297 HPP12_1540 Helicobacter pylori P12 membrane-bound metallopeptidase YP_002302166.1 1636214 D 570508 CDS YP_002302167.1 210135728 7011298 1637149..1638084 1 NC_011498.1 membrane-bound metallopeptidase 1638084 7011298 HPP12_1541 Helicobacter pylori P12 membrane-bound metallopeptidase YP_002302167.1 1637149 D 570508 CDS YP_002302168.1 210135729 7011299 1638003..1638413 1 NC_011498.1 hypothetical protein 1638413 7011299 HPP12_1542 Helicobacter pylori P12 hypothetical protein YP_002302168.1 1638003 D 570508 CDS YP_002302169.1 210135730 7011300 1638417..1641416 1 NC_011498.1 transcription-repair coupling factor 1641416 mfd 7011300 mfd Helicobacter pylori P12 transcription-repair coupling factor YP_002302169.1 1638417 D 570508 CDS YP_002302170.1 210135731 7011301 1641542..1642045 1 NC_011498.1 ubiquinol cytochrome C oxidoreductase rieske 2Fe-2S subunit 1642045 petA 7011301 petA Helicobacter pylori P12 ubiquinol cytochrome C oxidoreductase rieske 2Fe-2S subunit YP_002302170.1 1641542 D 570508 CDS YP_002302171.1 210135732 7011302 1642056..1643294 1 NC_011498.1 ubiquinol cytochrome C oxidoreductase cytochrome B subunit 1643294 7011302 HPP12_1545 Helicobacter pylori P12 ubiquinol cytochrome C oxidoreductase cytochrome B subunit YP_002302171.1 1642056 D 570508 CDS YP_002302172.1 210135733 7011303 1643291..1644148 1 NC_011498.1 ubiquinol cytochrome C oxidoreductase cytochrome C1 1644148 7011303 HPP12_1546 Helicobacter pylori P12 ubiquinol cytochrome C oxidoreductase cytochrome C1 YP_002302172.1 1643291 D 570508 CDS YP_002302173.1 210135734 7011304 complement(1644558..1645658) 1 NC_011498.1 hypothetical protein 1645658 7011304 HPP12_1547 Helicobacter pylori P12 hypothetical protein YP_002302173.1 1644558 R 570508 CDS YP_002302174.1 210135735 7011305 complement(1645987..1647834) 1 NC_011498.1 penicillin-binding protein; cell division protein FtsI 1647834 ftsI 7011305 ftsI Helicobacter pylori P12 cell division protein FtsI YP_002302174.1 1645987 R 570508 CDS YP_002302175.1 210135736 7011306 complement(1647990..1648319) 1 NC_011498.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1648319 fliE 7011306 fliE Helicobacter pylori P12 flagellar hook-basal body protein FliE YP_002302175.1 1647990 R 570508 CDS YP_002302176.1 210135737 7011307 complement(1648447..1648932) 1 NC_011498.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1648932 flgC 7011307 flgC Helicobacter pylori P12 flagellar basal body rod protein FlgC YP_002302176.1 1648447 R 570508 CDS YP_002302177.1 210135738 7011308 complement(1648945..1649367) 1 NC_011498.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1649367 flgB 7011308 flgB Helicobacter pylori P12 flagellar basal body rod protein FlgB YP_002302177.1 1648945 R 570508 CDS YP_002302178.1 210135739 7011309 1649576..1650742 1 NC_011498.1 cell division protein FtsW 1650742 ftsW 7011309 ftsW Helicobacter pylori P12 cell division protein FtsW YP_002302178.1 1649576 D 570508 CDS YP_002302179.1 210135740 7011310 complement(1650766..1651767) 1 NC_011498.1 iron(III) ABC transporter periplasmic iron-binding protein 1651767 7011310 HPP12_1553 Helicobacter pylori P12 iron(III) ABC transporter periplasmic iron-binding protein YP_002302179.1 1650766 R 570508 CDS YP_002302180.1 210135741 7011311 1652007..1652603 1 NC_011498.1 alkyl hydroperoxide reductase 1652603 7011311 HPP12_1554 Helicobacter pylori P12 alkyl hydroperoxide reductase YP_002302180.1 1652007 D 570508 CDS YP_002302181.1 210135742 7011312 1652751..1653566 1 NC_011498.1 outer membrane lipoprotein 1653566 7011312 HPP12_1555 Helicobacter pylori P12 outer membrane lipoprotein YP_002302181.1 1652751 D 570508 CDS YP_002302182.1 210135743 7011313 complement(1654038..1655804) 1 NC_011498.1 penicillin-binding protein 2 1655804 pbp2 7011313 pbp2 Helicobacter pylori P12 penicillin-binding protein 2 YP_002302182.1 1654038 R 570508 CDS YP_002302183.1 210135744 7011314 complement(1655801..1656229) 1 NC_011498.1 hypothetical protein 1656229 7011314 HPP12_1557 Helicobacter pylori P12 hypothetical protein YP_002302183.1 1655801 R 570508 CDS YP_002302184.1 210135745 7011315 complement(1656241..1656867) 1 NC_011498.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1656867 engB 7011315 engB Helicobacter pylori P12 ribosome biogenesis GTP-binding protein YsxC YP_002302184.1 1656241 R 570508 CDS YP_002302185.1 210135746 7011316 complement(1656864..1657421) 1 NC_011498.1 hypothetical protein 1657421 7011316 HPP12_1559 Helicobacter pylori P12 hypothetical protein YP_002302185.1 1656864 R 570508 CDS YP_002302186.1 210135747 7011317 complement(1657421..1658014) 1 NC_011498.1 hypothetical protein 1658014 7011317 HPP12_1560 Helicobacter pylori P12 hypothetical protein YP_002302186.1 1657421 R 570508 CDS YP_002302187.1 210135748 7011318 complement(1657989..1658483) 1 NC_011498.1 ABC transporter inner membrane protein 1658483 7011318 HPP12_1561 Helicobacter pylori P12 ABC transporter inner membrane protein YP_002302187.1 1657989 R 570508 CDS YP_002302188.1 210135749 7011319 complement(1658480..1659424) 1 NC_011498.1 rare lipoprotein A 1659424 rlpA 7011319 rlpA Helicobacter pylori P12 rare lipoprotein A YP_002302188.1 1658480 R 570508 CDS YP_002302189.1 210135750 7011320 complement(1659424..1660542) 1 NC_011498.1 regulatory protein DniR 1660542 dniR 7011320 dniR Helicobacter pylori P12 regulatory protein DniR YP_002302189.1 1659424 R 570508 CDS YP_002302190.1 210135751 7011321 complement(1660630..1661394) 1 NC_011498.1 DNAse of the TatD family 1661394 7011321 HPP12_1564 Helicobacter pylori P12 DNAse of the TatD family YP_002302190.1 1660630 R 570508 CDS YP_002302191.1 210135752 7011322 1661469..1662089 1 NC_011498.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1662089 ribC 7011322 ribC Helicobacter pylori P12 riboflavin synthase subunit alpha YP_002302191.1 1661469 D 570508 CDS YP_002302192.1 210135753 7011323 1662090..1662362 1 NC_011498.1 FlhB-related flagellar biosynthesis protein 1662362 flhB-2 7011323 flhB-2 Helicobacter pylori P12 FlhB-related flagellar biosynthesis protein YP_002302192.1 1662090 D 570508 CDS YP_002302193.1 210135754 7011324 1662384..1663367 1 NC_011498.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1663367 metN 7011324 metN Helicobacter pylori P12 DL-methionine transporter ATP-binding subunit YP_002302193.1 1662384 D 570508 CDS YP_002302194.1 210135755 7011325 1663369..1664016 1 NC_011498.1 ABC transporter permease protein 1664016 7011325 HPP12_1568 Helicobacter pylori P12 ABC transporter permease protein YP_002302194.1 1663369 D 570508 CDS YP_002302195.1 210135756 7011326 complement(1664048..1665166) 1 NC_011498.1 lps biosynthesis protein 1665166 7011326 HPP12_1569 Helicobacter pylori P12 lps biosynthesis protein YP_002302195.1 1664048 R 570508 CDS YP_002302196.1 210135757 7011327 complement(1665215..1665643) 1 NC_011498.1 hypothetical protein 1665643 7011327 HPP12_1570 Helicobacter pylori P12 hypothetical protein YP_002302196.1 1665215 R 570508 CDS YP_002302197.1 210135758 7011328 complement(1665653..1666315) 1 NC_011498.1 hypothetical protein 1666315 7011328 HPP12_1571 Helicobacter pylori P12 hypothetical protein YP_002302197.1 1665653 R 570508 CDS YP_002302198.1 210135759 7011329 complement(1666246..1667256) 1 NC_011498.1 undecaprenyl phosphate N-acetylglucosaminyltransferase 1667256 7011329 HPP12_1572 Helicobacter pylori P12 undecaprenyl phosphate N-acetylglucosaminyltransferase YP_002302198.1 1666246 R 570508 CDS YP_002302199.1 210135760 7011330 1667383..1668171 1 NC_011498.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1668171 pdxJ 7011330 pdxJ Helicobacter pylori P12 pyridoxine 5'-phosphate synthase YP_002302199.1 1667383 D 570508 CDS YP_002302200.1 210135761 7011331 1668173..1669096 1 NC_011498.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1669096 pdxA 7011331 pdxA Helicobacter pylori P12 4-hydroxythreonine-4-phosphate dehydrogenase YP_002302200.1 1668173 D 570508 CDS YP_002302201.1 210135762 7011332 1669161..1670183 1 NC_011498.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1670183 ydiE 7011332 ydiE Helicobacter pylori P12 putative DNA-binding/iron metalloprotein/AP endonuclease YP_002302201.1 1669161 D 570508 CDS YP_002302202.1 210135763 7011333 1670362..1671150 1 NC_011498.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1671150 flgG 7011333 flgG Helicobacter pylori P12 flagellar basal body rod protein FlgG YP_002302202.1 1670362 D 570508 CDS YP_002302203.1 210135764 7011334 complement(1671249..1671395) 1 NC_011498.1 hypothetical protein 1671395 7011334 HPP12_1577 Helicobacter pylori P12 hypothetical protein YP_002302203.1 1671249 R 570508 CDS YP_002302204.1 210135765 7011335 complement(1671626..1671973) 1 NC_011498.1 hypothetical protein 1671973 7011335 HPP12_1578 Helicobacter pylori P12 hypothetical protein YP_002302204.1 1671626 R 570508 CDS YP_002302205.1 210135766 7011336 complement(1671942..1672175) 1 NC_011498.1 hypothetical protein 1672175 7011336 HPP12_1579 Helicobacter pylori P12 hypothetical protein YP_002302205.1 1671942 R 570508 CDS YP_002302206.1 210135767 7011337 complement(1672526..1672666) 1 NC_011498.1 hypothetical protein 1672666 7011337 HPP12_1580 Helicobacter pylori P12 hypothetical protein YP_002302206.1 1672526 R 570508 CDS YP_002302207.1 210135768 7011338 complement(1672752..1673513) 1 NC_011498.1 hypothetical protein 1673513 7011338 HPP12_1581 Helicobacter pylori P12 hypothetical protein YP_002302207.1 1672752 R 570508 CDS YP_002302208.1 210135771 7011351 complement(8..1171) 1 NC_011499.1 MccC 1171 7011351 HPP12_p01 Helicobacter pylori P12 MccC YP_002302208.1 8 R 570508 CDS YP_002302209.1 210135772 7011341 complement(1183..2235) 1 NC_011499.1 MccB 2235 7011341 HPP12_p02 Helicobacter pylori P12 MccB YP_002302209.1 1183 R 570508 CDS YP_002302211.1 210135774 7011343 complement(2515..4497) 1 NC_011499.1 relaxase 4497 7011343 HPP12_p04 Helicobacter pylori P12 relaxase YP_002302211.1 2515 R 570508 CDS YP_002302212.1 210135775 7011344 complement(2553..3254) 1 NC_011499.1 MobD 3254 7011344 HPP12_p05 Helicobacter pylori P12 MobD YP_002302212.1 2553 R 570508 CDS YP_002302213.1 210135776 7011345 complement(3264..3794) 1 NC_011499.1 MobB 3794 7011345 HPP12_p06 Helicobacter pylori P12 MobB YP_002302213.1 3264 R 570508 CDS YP_002302214.1 210135777 7011346 complement(4487..4831) 1 NC_011499.1 MobC 4831 7011346 HPP12_p07 Helicobacter pylori P12 MobC YP_002302214.1 4487 R 570508 CDS YP_002302215.1 210135778 7011347 5026..5307 1 NC_011499.1 hypothetical protein 5307 7011347 HPP12_p08 Helicobacter pylori P12 hypothetical protein YP_002302215.1 5026 D 570508 CDS YP_002302216.1 210135779 7011348 5316..5585 1 NC_011499.1 hypothetical protein 5585 7011348 HPP12_p09 Helicobacter pylori P12 hypothetical protein YP_002302216.1 5316 D 570508 CDS YP_002302217.1 210135780 7011349 7531..9129 1 NC_011499.1 RepA 9129 7011349 HPP12_p10 Helicobacter pylori P12 RepA YP_002302217.1 7531 D 570508 CDS YP_002302218.1 210135781 7011350 9171..9908 1 NC_011499.1 Fic family protein 9908 7011350 HPP12_p11 Helicobacter pylori P12 Fic family protein YP_002302218.1 9171 D 570508 CDS