-- dump date 20140619_113420 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 357544000001 SEQ_END SEQ_END NC_008086.1 1596366 1596366 DR NC_008086.1; contig end 1596366..1596366 Helicobacter pylori HPAG1 357544000002 SEQ_END SEQ_END NC_008087.1 9370 9370 DR NC_008087.1; contig end 9370..9370 Helicobacter pylori HPAG1 YP_626741.1 CDS HPAG1_1536 NC_008086.1 513 1274 R hypothetical protein complement(513..1274) Helicobacter pylori HPAG1 4099339 YP_626742.1 CDS nusB NC_008086.1 1529 1945 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(1529..1945) Helicobacter pylori HPAG1 4099340 YP_626743.1 CDS ribH NC_008086.1 1947 2417 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(1947..2417) Helicobacter pylori HPAG1 4099341 YP_626744.1 CDS HPAG1_0003 NC_008086.1 2427 3257 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2427..3257) Helicobacter pylori HPAG1 4099342 YP_626745.1 CDS HPAG1_0004 NC_008086.1 3244 3909 R beta-carbonic anhydrase complement(3244..3909) Helicobacter pylori HPAG1 4099343 YP_626746.1 CDS HPAG1_0005 NC_008086.1 4032 4715 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 4032..4715 Helicobacter pylori HPAG1 4099344 YP_626747.1 CDS panC NC_008086.1 4716 5546 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 4716..5546 Helicobacter pylori HPAG1 4099345 YP_626749.1 CDS HPAG1_0008 NC_008086.1 6138 6332 D hypothetical protein 6138..6332 Helicobacter pylori HPAG1 4099143 YP_626750.1 CDS HPAG1_0009 NC_008086.1 6598 8493 R outer membrane protein HopZ complement(6598..8493) Helicobacter pylori HPAG1 4099144 YP_626751.1 CDS groEL NC_008086.1 8914 10554 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(8914..10554) Helicobacter pylori HPAG1 4099145 YP_626752.1 CDS groES NC_008086.1 10579 10935 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(10579..10935) Helicobacter pylori HPAG1 4099146 YP_626753.1 CDS dnaG NC_008086.1 11222 12901 D synthesizes RNA primers at the replication forks; DNA primase 11222..12901 Helicobacter pylori HPAG1 4099147 YP_626754.1 CDS HPAG1_0013 NC_008086.1 12898 13950 D hypothetical protein 12898..13950 Helicobacter pylori HPAG1 4099148 YP_626755.1 CDS HPAG1_0014 NC_008086.1 14035 14865 D hypothetical protein 14035..14865 Helicobacter pylori HPAG1 4099149 YP_626756.1 CDS HPAG1_0015 NC_008086.1 15010 15291 D hypothetical protein 15010..15291 Helicobacter pylori HPAG1 4099150 YP_626757.1 CDS HPAG1_0016 NC_008086.1 15291 15554 D hypothetical protein 15291..15554 Helicobacter pylori HPAG1 4098334 YP_626758.1 CDS HPAG1_0017 NC_008086.1 15556 17919 D ATPase/DNA transfer protein 15556..17919 Helicobacter pylori HPAG1 4098335 YP_626759.1 CDS HPAG1_0018 NC_008086.1 18152 19561 D hypothetical protein 18152..19561 Helicobacter pylori HPAG1 4098336 YP_626760.1 CDS HPAG1_0019 NC_008086.1 19657 20622 D chemotaxis protein 19657..20622 Helicobacter pylori HPAG1 4098337 YP_626761.1 CDS HPAG1_0020 NC_008086.1 20619 21836 D carboxynorspermidine decarboxylase 20619..21836 Helicobacter pylori HPAG1 4098338 YP_626762.1 CDS HPAG1_0021 NC_008086.1 21846 22412 R inner membrane enzyme; removes 1-phosphate groups from a number of lipid A precursors which provides a point of attachment for to moieties such as phosphoethanolamine which is attached by HP0022; lipid A 1-phosphatase complement(21846..22412) Helicobacter pylori HPAG1 4098339 YP_626763.1 CDS HPAG1_0022 NC_008086.1 22422 23993 R attaches phosphoethanolamine to lipid A at the 1 position of the disaccharide backbone in contrast to other gram-negative bacteria; lipid A phosphoethanolamine transferase complement(22422..23993) Helicobacter pylori HPAG1 4098340 YP_626764.1 CDS HPAG1_0023 NC_008086.1 24612 26678 R outer membrane protein HopD complement(24612..26678) Helicobacter pylori HPAG1 4098341 YP_626765.1 CDS gltA NC_008086.1 27207 28487 R type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase complement(27207..28487) Helicobacter pylori HPAG1 4098342 YP_626766.1 CDS HPAG1_0025 NC_008086.1 28696 29973 D isocitrate dehydrogenase 28696..29973 Helicobacter pylori HPAG1 4098343 YP_626767.1 CDS HPAG1_0026 NC_008086.1 30034 30567 D hypothetical protein 30034..30567 Helicobacter pylori HPAG1 4098344 YP_626768.1 CDS HPAG1_0027 NC_008086.1 30544 31200 R dethiobiotin synthetase complement(30544..31200) Helicobacter pylori HPAG1 4098345 YP_626769.1 CDS HPAG1_0028 NC_008086.1 31204 32937 R hypothetical protein complement(31204..32937) Helicobacter pylori HPAG1 4098346 YP_626770.1 CDS HPAG1_0029 NC_008086.1 33046 33459 D hypothetical protein 33046..33459 Helicobacter pylori HPAG1 4098347 YP_626771.1 CDS HPAG1_0030 NC_008086.1 33474 33749 D hypothetical protein 33474..33749 Helicobacter pylori HPAG1 4098348 YP_626772.1 CDS HPAG1_0031 NC_008086.1 33749 35974 D ATP-dependent C1p protease 33749..35974 Helicobacter pylori HPAG1 4098349 YP_626773.1 CDS HPAG1_0032 NC_008086.1 35964 36314 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 35964..36314 Helicobacter pylori HPAG1 4098350 YP_626774.1 CDS HPAG1_0033 NC_008086.1 36325 36618 D hypothetical protein 36325..36618 Helicobacter pylori HPAG1 4098351 YP_626775.1 CDS HPAG1_0034 NC_008086.1 36615 37613 D hypothetical protein 36615..37613 Helicobacter pylori HPAG1 4098352 YP_626776.1 CDS HPAG1_0035 NC_008086.1 37621 38676 D NADH-ubiquinone oxidoreductase subunit 37621..38676 Helicobacter pylori HPAG1 4098499 YP_626777.1 CDS HPAG1_0036 NC_008086.1 38692 38805 D comB7 putative lipoprotein 38692..38805 Helicobacter pylori HPAG1 4098500 YP_626778.1 CDS HPAG1_0037 NC_008086.1 38802 39545 D comB8 competence protein 38802..39545 Helicobacter pylori HPAG1 4098501 YP_626779.1 CDS HPAG1_0038 NC_008086.1 39542 40522 D comB9 competence protein 39542..40522 Helicobacter pylori HPAG1 4098502 YP_626780.1 CDS HPAG1_0039 NC_008086.1 40515 41645 D comB10 competence protein 40515..41645 Helicobacter pylori HPAG1 4098503 YP_626781.1 CDS HPAG1_0040 NC_008086.1 41715 43127 D mannose-6-phosphate isomerase 41715..43127 Helicobacter pylori HPAG1 4098504 YP_626782.1 CDS HPAG1_0041 NC_008086.1 43157 44302 D GDP-D-mannose dehydratase 43157..44302 Helicobacter pylori HPAG1 4098505 YP_626783.1 CDS HPAG1_0042 NC_008086.1 44295 45227 D GDP-fucose synthetase 44295..45227 Helicobacter pylori HPAG1 4098506 YP_626784.1 CDS HPAG1_0043 NC_008086.1 45541 46539 R hydrogenase expression/formation protein complement(45541..46539) Helicobacter pylori HPAG1 4098507 YP_626785.1 CDS HPAG1_0044 NC_008086.1 46542 48851 R transcriptional regulator complement(46542..48851) Helicobacter pylori HPAG1 4098508 YP_626786.1 CDS HPAG1_0045 NC_008086.1 48791 49783 R hypothetical protein complement(48791..49783) Helicobacter pylori HPAG1 4098509 YP_626787.1 CDS HPAG1_0046 NC_008086.1 49843 50535 R adenine specific DNA methyltransferase complement(49843..50535) Helicobacter pylori HPAG1 4098510 YP_626788.1 CDS HPAG1_0047 NC_008086.1 50532 51599 R cytosine specific DNA methyltransferase complement(50532..51599) Helicobacter pylori HPAG1 4098511 YP_626789.1 CDS HPAG1_0048 NC_008086.1 51621 52652 R type II DNA modification enzyme complement(51621..52652) Helicobacter pylori HPAG1 4098512 YP_626790.1 CDS HPAG1_0049 NC_008086.1 52662 53231 R type II restriction enzyme complement(52662..53231) Helicobacter pylori HPAG1 4098513 YP_626791.1 CDS HPAG1_0050 NC_008086.1 53219 53443 R type II restriction enzyme complement(53219..53443) Helicobacter pylori HPAG1 4098514 YP_626792.1 CDS HPAG1_0051 NC_008086.1 53634 53777 R adenine/cytosine DNA methyltransferase complement(53634..53777) Helicobacter pylori HPAG1 4098515 YP_626793.1 CDS HPAG1_0052 NC_008086.1 53815 55305 R sodium/proline symporter complement(53815..55305) Helicobacter pylori HPAG1 4098516 YP_626794.1 CDS HPAG1_0053 NC_008086.1 55332 58889 R proline/delta 1-pyrroline-5-carboxylate dehydrogenase complement(55332..58889) Helicobacter pylori HPAG1 4098517 YP_626795.1 CDS HPAG1_0054 NC_008086.1 59216 59425 D hypothetical protein 59216..59425 Helicobacter pylori HPAG1 4098518 YP_626796.1 CDS HPAG1_0055 NC_008086.1 59510 59701 D M-protein 59510..59701 Helicobacter pylori HPAG1 4098461 YP_626797.1 CDS HPAG1_0056 NC_008086.1 59932 60528 D hypothetical protein 59932..60528 Helicobacter pylori HPAG1 4098462 YP_626798.1 CDS HPAG1_0057 NC_008086.1 60529 61278 D hypothetical protein 60529..61278 Helicobacter pylori HPAG1 4098463 YP_626799.1 CDS HPAG1_0058 NC_008086.1 61289 62494 D hypothetical protein 61289..62494 Helicobacter pylori HPAG1 4098464 YP_626800.1 CDS HPAG1_0059 NC_008086.1 62404 63639 D hypothetical protein 62404..63639 Helicobacter pylori HPAG1 4098465 YP_626801.1 CDS HPAG1_0060 NC_008086.1 63640 63738 D hypothetical protein 63640..63738 Helicobacter pylori HPAG1 4098466 YP_626802.1 CDS HPAG1_0061 NC_008086.1 63764 64303 D hypothetical protein 63764..64303 Helicobacter pylori HPAG1 4098467 YP_626803.1 CDS HPAG1_0062 NC_008086.1 64319 64579 D hypothetical protein 64319..64579 Helicobacter pylori HPAG1 4098468 YP_626804.1 CDS HPAG1_0063 NC_008086.1 64589 66394 D hypothetical protein 64589..66394 Helicobacter pylori HPAG1 4098469 YP_626805.1 CDS HPAG1_0064 NC_008086.1 66364 66783 D hypothetical protein 66364..66783 Helicobacter pylori HPAG1 4098470 YP_626806.1 CDS HPAG1_0065 NC_008086.1 66785 67138 D hypothetical protein 66785..67138 Helicobacter pylori HPAG1 4098471 YP_626807.1 CDS HPAG1_0066 NC_008086.1 67131 67745 D ATP-binding protein 67131..67745 Helicobacter pylori HPAG1 4098472 YP_626808.1 CDS HPAG1_0067 NC_008086.1 67751 69562 D ATP-binding protein 67751..69562 Helicobacter pylori HPAG1 4098473 YP_626809.1 CDS HPAG1_0068 NC_008086.1 69707 70504 R urease accessory protein UreH complement(69707..70504) Helicobacter pylori HPAG1 4098474 YP_626810.1 CDS HPAG1_0069 NC_008086.1 70504 71103 R urease accessory protein UreG complement(70504..71103) Helicobacter pylori HPAG1 4098475 YP_626811.1 CDS HPAG1_0070 NC_008086.1 71132 71899 R urease accessory protein UreF complement(71132..71899) Helicobacter pylori HPAG1 4098476 YP_626812.1 CDS ureE NC_008086.1 71911 72423 R involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE complement(71911..72423) Helicobacter pylori HPAG1 4098477 YP_626813.1 CDS HPAG1_0072 NC_008086.1 72425 73012 R urease accessory protein/pH-dependent urea-transporter UreI complement(72425..73012) Helicobacter pylori HPAG1 4098478 YP_626814.1 CDS ureB NC_008086.1 73205 74914 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit beta complement(73205..74914) Helicobacter pylori HPAG1 4098479 YP_626815.1 CDS ureA NC_008086.1 74918 75634 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureA(alpha) and 3 ureB (beta) subunits; urease subunit alpha complement(74918..75634) Helicobacter pylori HPAG1 4099022 YP_626816.1 CDS lspA NC_008086.1 75980 76453 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(75980..76453) Helicobacter pylori HPAG1 4099024 YP_626817.1 CDS glmM NC_008086.1 76447 77784 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(76447..77784) Helicobacter pylori HPAG1 4099025 YP_626818.1 CDS rpsT NC_008086.1 77874 78143 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 77874..78143 Helicobacter pylori HPAG1 4099026 YP_626819.1 CDS prfA NC_008086.1 78268 79326 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 78268..79326 Helicobacter pylori HPAG1 4099027 YP_626820.1 CDS HPAG1_0079 NC_008086.1 79739 79996 D reminiscent outer membrane protein HorA 79739..79996 Helicobacter pylori HPAG1 4099028 YP_626821.1 CDS HPAG1_0080 NC_008086.1 80008 81711 D outer membrane protein HorA 80008..81711 Helicobacter pylori HPAG1 4099029 YP_626822.1 CDS HPAG1_0081 NC_008086.1 81957 83693 D hypothetical protein 81957..83693 Helicobacter pylori HPAG1 4099030 YP_626823.1 CDS HPAG1_0082 NC_008086.1 83867 83977 D hypothetical protein 83867..83977 Helicobacter pylori HPAG1 4099031 YP_626824.1 CDS HPAG1_0083 NC_008086.1 84115 86136 R methyl-accepting chemotaxis protein complement(84115..86136) Helicobacter pylori HPAG1 4099032 YP_626825.1 CDS rpsI NC_008086.1 86288 86677 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(86288..86677) Helicobacter pylori HPAG1 4099033 YP_626826.1 CDS rplM NC_008086.1 86674 87099 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(86674..87099) Helicobacter pylori HPAG1 4099034 YP_626827.1 CDS HPAG1_0086 NC_008086.1 87403 87591 R hypothetical protein complement(87403..87591) Helicobacter pylori HPAG1 4099035 YP_626828.1 CDS HPAG1_0087 NC_008086.1 87598 88950 R hypothetical protein complement(87598..88950) Helicobacter pylori HPAG1 4099036 YP_626829.1 CDS HPAG1_0088 NC_008086.1 89004 90377 R hypothetical protein complement(89004..90377) Helicobacter pylori HPAG1 4099037 YP_626830.1 CDS HPAG1_0089 NC_008086.1 90398 92476 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(90398..92476) Helicobacter pylori HPAG1 4099038 YP_626831.1 CDS HPAG1_0090 NC_008086.1 92666 93361 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(92666..93361) Helicobacter pylori HPAG1 4099039 YP_626832.1 CDS HPAG1_0091 NC_008086.1 93372 94301 R acyl-carrier-protein S-malonyltransferase complement(93372..94301) Helicobacter pylori HPAG1 4099040 YP_626833.1 CDS HPAG1_0092 NC_008086.1 94738 95736 D HrgA protein 94738..95736 Helicobacter pylori HPAG1 4099185 YP_626834.1 CDS HPAG1_0093 NC_008086.1 95740 96561 D type II adenine methyltransferase 95740..96561 Helicobacter pylori HPAG1 4099186 YP_626835.1 CDS HPAG1_0094 NC_008086.1 96584 97489 R alpha-1,2-fucosyltransferase complement(96584..97489) Helicobacter pylori HPAG1 4099187 YP_626836.1 CDS HPAG1_0095 NC_008086.1 97585 98115 R hypothetical protein complement(97585..98115) Helicobacter pylori HPAG1 4099188 YP_626837.1 CDS HPAG1_0096 NC_008086.1 98188 99132 D Involved in the metabolism of aromatic amino acids; 2-hydroxyacid dehydrogenase 98188..99132 Helicobacter pylori HPAG1 4099189 YP_626838.1 CDS HPAG1_0097 NC_008086.1 99279 99992 R hypothetical protein complement(99279..99992) Helicobacter pylori HPAG1 4099190 YP_626839.1 CDS HPAG1_0098 NC_008086.1 100097 101557 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(100097..101557) Helicobacter pylori HPAG1 4099191 YP_626840.1 CDS HPAG1_0099 NC_008086.1 101761 103788 D methyl-accepting chemotaxis transmembrane sensory protein 101761..103788 Helicobacter pylori HPAG1 4099192 YP_626841.1 CDS HPAG1_0100 NC_008086.1 103788 104894 D hypothetical protein 103788..104894 Helicobacter pylori HPAG1 4099193 YP_626842.1 CDS HPAG1_0101 NC_008086.1 105008 105769 D hypothetical protein 105008..105769 Helicobacter pylori HPAG1 4099194 YP_626843.1 CDS HPAG1_0102 NC_008086.1 105752 106531 R hypothetical protein complement(105752..106531) Helicobacter pylori HPAG1 4099195 YP_626844.1 CDS HPAG1_0103 NC_008086.1 106562 108259 R methyl-accepting chemotaxis protein complement(106562..108259) Helicobacter pylori HPAG1 4099196 YP_626845.1 CDS HPAG1_0104 NC_008086.1 108461 110206 R 2',3'-cyclic-nucleotide 2'-phosphodiesterase complement(108461..110206) Helicobacter pylori HPAG1 4099197 YP_626846.1 CDS HPAG1_0105 NC_008086.1 110374 110841 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(110374..110841) Helicobacter pylori HPAG1 4099198 YP_626847.1 CDS HPAG1_0106 NC_008086.1 110879 112021 R catalyzes the formation of L-cystathionine from O-succinyl-L-homoserine and L-cysteine; or Cystathionine beta-lyase (CBL) can convert cystathionine to homocysteine; cystathionine gamma-synthase/cystathionine beta-lyase complement(110879..112021) Helicobacter pylori HPAG1 4099199 YP_626848.1 CDS HPAG1_0107 NC_008086.1 112042 112962 R cysteine synthetase complement(112042..112962) Helicobacter pylori HPAG1 4099200 YP_626849.1 CDS HPAG1_0108 NC_008086.1 113121 113642 D hypothetical protein 113121..113642 Helicobacter pylori HPAG1 4099201 YP_626850.1 CDS dnaK NC_008086.1 113876 115738 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(113876..115738) Helicobacter pylori HPAG1 4097903 YP_626851.1 CDS HPAG1_0110 NC_008086.1 115769 116344 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(115769..116344) Helicobacter pylori HPAG1 4097904 YP_626852.1 CDS HPAG1_0111 NC_008086.1 116344 117174 R Acts as a negative regulator of the grpE-dnaK-dnaJ and groELS class I heat shock operons by preventing heat-shock induction; heat-inducible transcription repressor complement(116344..117174) Helicobacter pylori HPAG1 4097905 YP_626853.1 CDS HPAG1_0112 NC_008086.1 117385 118023 D hypothetical protein 117385..118023 Helicobacter pylori HPAG1 4097906 YP_626854.1 CDS HPAG1_0113 NC_008086.1 118044 118340 D hypothetical protein 118044..118340 Helicobacter pylori HPAG1 4097907 YP_626855.1 CDS HPAG1_0114 NC_008086.1 118350 120236 R hypothetical protein complement(118350..120236) Helicobacter pylori HPAG1 4097908 YP_626856.1 CDS HPAG1_0115 NC_008086.1 120296 121840 R FlaB; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin B complement(120296..121840) Helicobacter pylori HPAG1 4097909 YP_626857.1 CDS HPAG1_0116 NC_008086.1 122006 124216 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 122006..124216 Helicobacter pylori HPAG1 4097910 YP_626858.1 CDS HPAG1_0117 NC_008086.1 124209 125135 D hypothetical protein 124209..125135 Helicobacter pylori HPAG1 4097911 YP_626859.1 CDS HPAG1_0118 NC_008086.1 125275 126492 R hypothetical protein complement(125275..126492) Helicobacter pylori HPAG1 4097912 YP_626860.1 CDS HPAG1_0119 NC_008086.1 126777 128009 R hypothetical protein complement(126777..128009) Helicobacter pylori HPAG1 4097913 YP_626861.1 CDS HPAG1_0120 NC_008086.1 128097 130535 R catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase complement(128097..130535) Helicobacter pylori HPAG1 4097914 YP_626862.1 CDS HPAG1_0121 NC_008086.1 130715 130852 D hypothetical protein 130715..130852 Helicobacter pylori HPAG1 4097915 YP_626863.1 CDS thrS NC_008086.1 130909 132747 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 130909..132747 Helicobacter pylori HPAG1 4097916 YP_626864.1 CDS infC NC_008086.1 132744 133355 D IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 132744..133355 Helicobacter pylori HPAG1 4097917 YP_626865.1 CDS rpmI NC_008086.1 133336 133530 D 50S ribosomal protein L35 133336..133530 Helicobacter pylori HPAG1 4097918 YP_626866.1 CDS rplT NC_008086.1 133624 133974 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 133624..133974 Helicobacter pylori HPAG1 4097919 YP_626867.1 CDS HPAG1_0126 NC_008086.1 134174 135034 D outer membrane protein HorB 134174..135034 Helicobacter pylori HPAG1 4097920 YP_626868.1 CDS HPAG1_0127 NC_008086.1 135086 135211 D hypothetical protein 135086..135211 Helicobacter pylori HPAG1 4097921 YP_626869.1 CDS HPAG1_0128 NC_008086.1 135378 135809 D hypothetical protein 135378..135809 Helicobacter pylori HPAG1 4097922 YP_626870.1 CDS HPAG1_0129 NC_008086.1 136221 137081 D hypothetical protein 136221..137081 Helicobacter pylori HPAG1 4099151 YP_626871.1 CDS HPAG1_0130 NC_008086.1 137683 139050 R L-serine deaminase complement(137683..139050) Helicobacter pylori HPAG1 4099152 YP_626872.1 CDS HPAG1_0131 NC_008086.1 139050 140291 R L-serine transporter complement(139050..140291) Helicobacter pylori HPAG1 4099153 YP_626873.1 CDS HPAG1_0132 NC_008086.1 140473 141822 D tyrosine-regulated 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 140473..141822 Helicobacter pylori HPAG1 4099154 YP_626874.1 CDS HPAG1_0133 NC_008086.1 142115 142249 D hypothetical protein 142115..142249 Helicobacter pylori HPAG1 4099155 YP_626875.1 CDS HPAG1_0134 NC_008086.1 142480 142938 R bacterioferritin comigratory protein complement(142480..142938) Helicobacter pylori HPAG1 4099156 YP_626876.1 CDS HPAG1_0135 NC_008086.1 142948 143583 R hypothetical protein complement(142948..143583) Helicobacter pylori HPAG1 4099157 YP_626877.1 CDS HPAG1_0136 NC_008086.1 143576 145021 R putative iron-sulfur protein complement(143576..145021) Helicobacter pylori HPAG1 4099158 YP_626878.1 CDS HPAG1_0137 NC_008086.1 145051 145779 R hypothetical protein complement(145051..145779) Helicobacter pylori HPAG1 4099159 YP_626879.1 CDS HPAG1_0138 NC_008086.1 145999 147648 D L-lactate permease 145999..147648 Helicobacter pylori HPAG1 4099160 YP_626880.1 CDS HPAG1_0139 NC_008086.1 147698 149353 D L-lactate permease 147698..149353 Helicobacter pylori HPAG1 4099161 YP_626881.1 CDS HPAG1_0140 NC_008086.1 149377 150363 R DNA glycosylase MutY complement(149377..150363) Helicobacter pylori HPAG1 4099162 YP_626882.1 CDS HPAG1_0141 NC_008086.1 150364 151812 R C(4)-dicarboxylates and tricarboxylates/succinate antiporter complement(150364..151812) Helicobacter pylori HPAG1 4099163 YP_626883.1 CDS HPAG1_0142 NC_008086.1 151982 153448 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 151982..153448 Helicobacter pylori HPAG1 4099164 YP_626884.1 CDS HPAG1_0143 NC_008086.1 153461 154159 D CcoO; FixO; cbb3-type cytochrome c oxidase subunit II 153461..154159 Helicobacter pylori HPAG1 4099165 YP_626885.1 CDS HPAG1_0144 NC_008086.1 154167 154388 D cytochrome c oxidase subunit Q 154167..154388 Helicobacter pylori HPAG1 4099166 YP_626886.1 CDS HPAG1_0145 NC_008086.1 154390 155268 D cytochrome c oxidase diheme subunit 154390..155268 Helicobacter pylori HPAG1 4099167 YP_626887.1 CDS HPAG1_0146 NC_008086.1 155279 155485 D hypothetical protein 155279..155485 Helicobacter pylori HPAG1 4099168 YP_626888.1 CDS HPAG1_0147 NC_008086.1 155586 156170 D hypothetical protein 155586..156170 Helicobacter pylori HPAG1 4099169 YP_626889.1 CDS HPAG1_0148 NC_008086.1 156183 156773 D hypothetical protein 156183..156773 Helicobacter pylori HPAG1 4098983 YP_626890.1 CDS HPAG1_0149 NC_008086.1 156854 157621 D hypothetical protein 156854..157621 Helicobacter pylori HPAG1 4098984 YP_626891.1 CDS HPAG1_0150 NC_008086.1 157618 158481 R hypothetical protein complement(157618..158481) Helicobacter pylori HPAG1 4098985 YP_626892.1 CDS recA NC_008086.1 158580 159623 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 158580..159623 Helicobacter pylori HPAG1 4098986 YP_626893.1 CDS eno NC_008086.1 159636 160916 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 159636..160916 Helicobacter pylori HPAG1 4098987 YP_626894.1 CDS HPAG1_0153 NC_008086.1 160909 161184 D hypothetical protein 160909..161184 Helicobacter pylori HPAG1 4098988 YP_626895.1 CDS HPAG1_0154 NC_008086.1 161196 161798 D hypothetical protein 161196..161798 Helicobacter pylori HPAG1 4098989 YP_626896.1 CDS aroK NC_008086.1 161803 162291 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 161803..162291 Helicobacter pylori HPAG1 4098990 YP_626897.1 CDS HPAG1_0156 NC_008086.1 162312 163268 D hypothetical protein 162312..163268 Helicobacter pylori HPAG1 4098991 YP_626898.1 CDS HPAG1_0157 NC_008086.1 163265 164383 R lipopolysaccharide 1,2-glycosyltransferase complement(163265..164383) Helicobacter pylori HPAG1 4098992 YP_626899.1 CDS HPAG1_0158 NC_008086.1 164535 165455 D cysteine-rich protein D 164535..165455 Helicobacter pylori HPAG1 4098993 YP_626900.1 CDS HPAG1_0159 NC_008086.1 165996 166718 R hypothetical protein complement(165996..166718) Helicobacter pylori HPAG1 4098994 YP_626901.1 CDS HPAG1_0160 NC_008086.1 166719 167690 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(166719..167690) Helicobacter pylori HPAG1 4098995 YP_626902.1 CDS HPAG1_0161 NC_008086.1 167762 169045 R putative histidine kinase sensor protein complement(167762..169045) Helicobacter pylori HPAG1 4098996 YP_626903.1 CDS HPAG1_0162 NC_008086.1 169071 169748 R response regulator complement(169071..169748) Helicobacter pylori HPAG1 4098997 YP_626904.1 CDS HPAG1_0163 NC_008086.1 169980 170456 R hypothetical protein complement(169980..170456) Helicobacter pylori HPAG1 4098998 YP_626905.1 CDS HPAG1_0164 NC_008086.1 170435 170698 R hypothetical protein complement(170435..170698) Helicobacter pylori HPAG1 4098999 YP_626906.1 CDS HPAG1_0165 NC_008086.1 170745 172013 R collagenase complement(170745..172013) Helicobacter pylori HPAG1 4099000 YP_626907.1 CDS HPAG1_0166 NC_008086.1 172016 172747 R hypothetical protein complement(172016..172747) Helicobacter pylori HPAG1 4099001 YP_626908.1 CDS prfB NC_008086.1 172822 173913 R recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1; peptide chain release factor 2 complement(172822..173913) Helicobacter pylori HPAG1 4099002 YP_626909.1 CDS HPAG1_0168 NC_008086.1 173974 175149 R molybdopterin biosynthesis protein complement(173974..175149) Helicobacter pylori HPAG1 4098056 YP_626910.1 CDS fliR NC_008086.1 175159 175926 R FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR complement(175159..175926) Helicobacter pylori HPAG1 4098057 YP_626911.1 CDS HPAG1_0170 NC_008086.1 175920 176648 R hypothetical protein complement(175920..176648) Helicobacter pylori HPAG1 4098058 YP_626912.1 CDS HPAG1_0171 NC_008086.1 177121 178020 D peptidyl-prolyl cis-trans isomerase C 177121..178020 Helicobacter pylori HPAG1 4098059 YP_626913.1 CDS HPAG1_0172 NC_008086.1 178037 178960 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 178037..178960 Helicobacter pylori HPAG1 4098060 YP_626914.1 CDS HPAG1_0173 NC_008086.1 178982 179545 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 178982..179545 Helicobacter pylori HPAG1 4098061 YP_626915.1 CDS HPAG1_0174 NC_008086.1 180226 180495 D hypothetical protein 180226..180495 Helicobacter pylori HPAG1 4098062 YP_626916.1 CDS HPAG1_0175 NC_008086.1 180487 181509 R sialic acid synthase complement(180487..181509) Helicobacter pylori HPAG1 4098063 YP_626917.1 CDS HPAG1_0176 NC_008086.1 181513 182154 R ABC transporter complement(181513..182154) Helicobacter pylori HPAG1 4098064 YP_626918.1 CDS HPAG1_0177 NC_008086.1 182154 183428 R Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase complement(182154..183428) Helicobacter pylori HPAG1 4098065 YP_626919.1 CDS HPAG1_0178 NC_008086.1 183653 184354 D hypothetical protein 183653..184354 Helicobacter pylori HPAG1 4098066 YP_626920.1 CDS lysS NC_008086.1 184364 185869 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 184364..185869 Helicobacter pylori HPAG1 4098067 YP_626921.1 CDS glyA NC_008086.1 185869 187119 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 185869..187119 Helicobacter pylori HPAG1 4098068 YP_626922.1 CDS HPAG1_0181 NC_008086.1 187130 187672 D hypothetical protein 187130..187672 Helicobacter pylori HPAG1 4098069 YP_626923.1 CDS HPAG1_0182 NC_008086.1 187694 188503 D hypothetical protein 187694..188503 Helicobacter pylori HPAG1 4098070 YP_626924.1 CDS HPAG1_0183 NC_008086.1 189275 189808 D hypothetical protein 189275..189808 Helicobacter pylori HPAG1 4098071 YP_626925.1 CDS HPAG1_0184 NC_008086.1 189814 191322 R phospholipase D-family protein complement(189814..191322) Helicobacter pylori HPAG1 4098072 YP_626926.1 CDS frdB NC_008086.1 191344 192081 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(191344..192081) Helicobacter pylori HPAG1 4098073 YP_626927.1 CDS HPAG1_0186 NC_008086.1 192074 194218 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(192074..194218) Helicobacter pylori HPAG1 4098074 YP_626928.1 CDS HPAG1_0187 NC_008086.1 194228 194995 R part of three member fumarate reductase enzyme complex FrdABC which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdC is the cytochrome b-556 subunit; fumarate reductase cytochrome b-556 subunit complement(194228..194995) Helicobacter pylori HPAG1 4099261 YP_626929.1 CDS tpiA NC_008086.1 195209 195913 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 195209..195913 Helicobacter pylori HPAG1 4099262 YP_626930.1 CDS HPAG1_0189 NC_008086.1 195923 196756 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 195923..196756 Helicobacter pylori HPAG1 4099263 YP_626931.1 CDS lpxD NC_008086.1 196756 197766 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 196756..197766 Helicobacter pylori HPAG1 4099264 YP_626932.1 CDS HPAG1_0191 NC_008086.1 197831 198988 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 197831..198988 Helicobacter pylori HPAG1 4099265 YP_626933.1 CDS ndk NC_008086.1 199054 199467 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 199054..199467 Helicobacter pylori HPAG1 4099266 YP_626934.1 CDS HPAG1_0193 NC_008086.1 199492 199848 D hypothetical protein 199492..199848 Helicobacter pylori HPAG1 4099267 YP_626935.1 CDS rpmF NC_008086.1 199864 200010 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 199864..200010 Helicobacter pylori HPAG1 4099268 YP_626936.1 CDS HPAG1_0195 NC_008086.1 200076 201098 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 200076..201098 Helicobacter pylori HPAG1 4099269 YP_626937.1 CDS HPAG1_0196 NC_008086.1 201123 202115 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 201123..202115 Helicobacter pylori HPAG1 4099270 YP_626938.1 CDS HPAG1_0197 NC_008086.1 202082 202438 D hypothetical protein 202082..202438 Helicobacter pylori HPAG1 4099271 YP_626939.1 CDS HPAG1_0198 NC_008086.1 203064 203447 R hypothetical protein complement(203064..203447) Helicobacter pylori HPAG1 4099272 YP_626940.1 CDS HPAG1_0199 NC_008086.1 203524 205164 R hypothetical protein complement(203524..205164) Helicobacter pylori HPAG1 4099273 YP_626941.1 CDS HPAG1_0200 NC_008086.1 205230 205787 R hypothetical protein complement(205230..205787) Helicobacter pylori HPAG1 4099274 YP_626942.1 CDS HPAG1_0201 NC_008086.1 205999 207228 R putative transposase OrfB complement(205999..207228) Helicobacter pylori HPAG1 4099275 YP_626943.1 CDS HPAG1_0202 NC_008086.1 207215 207847 R putative transposase OrfA complement(207215..207847) Helicobacter pylori HPAG1 4099276 YP_626944.1 CDS HPAG1_0203 NC_008086.1 207844 208038 R hypothetical protein complement(207844..208038) Helicobacter pylori HPAG1 4099277 YP_626945.1 CDS HPAG1_0204 NC_008086.1 208031 208249 R hypothetical protein complement(208031..208249) Helicobacter pylori HPAG1 4099278 YP_626946.1 CDS HPAG1_0205 NC_008086.1 208297 208962 R hypothetical protein complement(208297..208962) Helicobacter pylori HPAG1 4099279 YP_626947.1 CDS HPAG1_0206 NC_008086.1 208950 209054 R hypothetical protein complement(208950..209054) Helicobacter pylori HPAG1 4098299 YP_626948.1 CDS HPAG1_0207 NC_008086.1 209040 210281 D ATP-binding protein 209040..210281 Helicobacter pylori HPAG1 4099280 YP_626949.1 CDS HPAG1_0208 NC_008086.1 210295 211431 R lipopolysaccharide 1,2-glycosyltransferase complement(210295..211431) Helicobacter pylori HPAG1 4098300 YP_626950.1 CDS HPAG1_0209 NC_008086.1 211362 211481 R lipopolysaccharide 1,2-glycosyltransferase complement(211362..211481) Helicobacter pylori HPAG1 4098301 YP_626951.1 CDS HPAG1_0210 NC_008086.1 211636 212988 D outer membrane protein HofA 211636..212988 Helicobacter pylori HPAG1 4098302 YP_626952.1 CDS HPAG1_0211 NC_008086.1 213091 214956 D molecular chaperone; heat shock protein 90 213091..214956 Helicobacter pylori HPAG1 4098303 YP_626953.1 CDS HPAG1_0212 NC_008086.1 215289 216041 R cysteine-rich protein A complement(215289..216041) Helicobacter pylori HPAG1 4098304 YP_626954.1 CDS HPAG1_0213 NC_008086.1 216501 217652 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(216501..217652) Helicobacter pylori HPAG1 4098305 YP_626955.1 CDS HPAG1_0214 NC_008086.1 217662 219527 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(217662..219527) Helicobacter pylori HPAG1 4098306 YP_626956.1 CDS HPAG1_0215 NC_008086.1 219623 221281 D sodium-dependent transporter 219623..221281 Helicobacter pylori HPAG1 4098307 YP_626957.1 CDS HPAG1_0216 NC_008086.1 221294 222094 D CDP-diacylglycerol synthetase 221294..222094 Helicobacter pylori HPAG1 4098308 YP_626958.1 CDS HPAG1_0217 NC_008086.1 222095 223201 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 222095..223201 Helicobacter pylori HPAG1 4098309 YP_626959.1 CDS HPAG1_0218 NC_008086.1 223252 223557 D beta-1,4-N-acetylgalactosamyltransferase 223252..223557 Helicobacter pylori HPAG1 4098310 YP_626960.1 CDS HPAG1_0219 NC_008086.1 223532 224392 D hypothetical protein 223532..224392 Helicobacter pylori HPAG1 4098311 YP_626961.1 CDS HPAG1_0220 NC_008086.1 224408 224959 R hypothetical protein complement(224408..224959) Helicobacter pylori HPAG1 4098312 YP_626962.1 CDS HPAG1_0221 NC_008086.1 225083 225565 D hypothetical protein 225083..225565 Helicobacter pylori HPAG1 4098313 YP_626963.1 CDS HPAG1_0222 NC_008086.1 225733 226902 D cysteine desulfurase 225733..226902 Helicobacter pylori HPAG1 4098314 YP_626964.1 CDS HPAG1_0223 NC_008086.1 226924 227904 D nifU-like protein 226924..227904 Helicobacter pylori HPAG1 4098315 YP_626965.1 CDS HPAG1_0224 NC_008086.1 228065 228298 D hypothetical protein 228065..228298 Helicobacter pylori HPAG1 4098316 YP_626966.1 CDS HPAG1_0225 NC_008086.1 228392 229762 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 228392..229762 Helicobacter pylori HPAG1 4098317 YP_626967.1 CDS HPAG1_0226 NC_008086.1 229886 230965 D bifunctional methionine sulfoxide reductase A/B protein 229886..230965 Helicobacter pylori HPAG1 4097959 YP_626968.1 CDS HPAG1_0227 NC_008086.1 231156 231362 D hypothetical protein 231156..231362 Helicobacter pylori HPAG1 4097960 YP_626969.1 CDS HPAG1_0228 NC_008086.1 231339 232172 R hypothetical protein complement(231339..232172) Helicobacter pylori HPAG1 4097961 YP_626970.1 CDS HPAG1_0229 NC_008086.1 232385 232450 R remnant of HopM complement(232385..232450) Helicobacter pylori HPAG1 4097962 YP_626971.1 CDS HPAG1_0230 NC_008086.1 232492 234468 R outer membrane protein HopM complement(232492..234468) Helicobacter pylori HPAG1 4097963 YP_626972.1 CDS HPAG1_0231 NC_008086.1 234724 235881 D hypothetical protein 234724..235881 Helicobacter pylori HPAG1 4097964 YP_626973.1 CDS HPAG1_0232 NC_008086.1 236130 237590 R outer membrane protein HopA complement(236130..237590) Helicobacter pylori HPAG1 4097966 YP_626974.1 CDS HPAG1_0233 NC_008086.1 237786 238517 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(237786..238517) Helicobacter pylori HPAG1 4097967 YP_626975.1 CDS HPAG1_0234 NC_008086.1 238630 239427 D hypothetical protein 238630..239427 Helicobacter pylori HPAG1 4097968 YP_626976.1 CDS HPAG1_0235 NC_008086.1 239443 240093 D hypothetical protein 239443..240093 Helicobacter pylori HPAG1 4097969 YP_626977.1 CDS HPAG1_0236 NC_008086.1 240115 241287 D hypothetical protein 240115..241287 Helicobacter pylori HPAG1 4097970 YP_626978.1 CDS HPAG1_0237 NC_008086.1 241287 241817 D hypothetical protein 241287..241817 Helicobacter pylori HPAG1 4097971 YP_626979.1 CDS HPAG1_0238 NC_008086.1 242589 243656 R cysteine-rich protein E complement(242589..243656) Helicobacter pylori HPAG1 4097972 YP_626980.1 CDS HPAG1_0239 NC_008086.1 243750 244115 R hypothetical protein complement(243750..244115) Helicobacter pylori HPAG1 4097973 YP_626981.1 CDS hemC NC_008086.1 244115 245035 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(244115..245035) Helicobacter pylori HPAG1 4097974 YP_626982.1 CDS HPAG1_0241 NC_008086.1 245046 246779 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(245046..246779) Helicobacter pylori HPAG1 4097975 YP_626983.1 CDS hemA NC_008086.1 246783 248132 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(246783..248132) Helicobacter pylori HPAG1 4097976 YP_626984.1 CDS HPAG1_0243 NC_008086.1 248132 249055 R putative octaprenyl-diphosphate synthase complement(248132..249055) Helicobacter pylori HPAG1 4097977 YP_626985.1 CDS HPAG1_0244 NC_008086.1 249065 249466 R hypothetical protein complement(249065..249466) Helicobacter pylori HPAG1 4098908 YP_626986.1 CDS HPAG1_0245 NC_008086.1 249453 249785 R hypothetical protein complement(249453..249785) Helicobacter pylori HPAG1 4098909 YP_626987.1 CDS HPAG1_0246 NC_008086.1 249758 250195 R neutrophil activating protein complement(249758..250195) Helicobacter pylori HPAG1 4098910 YP_626988.1 CDS HPAG1_0247 NC_008086.1 250398 251543 R histidine kinase sensor protein complement(250398..251543) Helicobacter pylori HPAG1 4098911 YP_626989.1 CDS HPAG1_0248 NC_008086.1 251540 251857 R hypothetical protein complement(251540..251857) Helicobacter pylori HPAG1 4098912 YP_626990.1 CDS flgI NC_008086.1 251854 252882 R part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein complement(251854..252882) Helicobacter pylori HPAG1 4098913 YP_626991.1 CDS HPAG1_0250 NC_008086.1 253067 254545 D ATP-dependent RNA helicase 253067..254545 Helicobacter pylori HPAG1 4098914 YP_626992.1 CDS HPAG1_0251 NC_008086.1 254566 255654 D hypothetical protein 254566..255654 Helicobacter pylori HPAG1 4098915 YP_626993.1 CDS HPAG1_0252 NC_008086.1 255661 256200 D hypothetical protein 255661..256200 Helicobacter pylori HPAG1 4098916 YP_626994.1 CDS HPAG1_0253 NC_008086.1 256252 257802 R oligopeptide permease ATPase protein complement(256252..257802) Helicobacter pylori HPAG1 4098917 YP_626995.1 CDS HPAG1_0254 NC_008086.1 257812 258834 R oligopeptide permease integral membrane protein complement(257812..258834) Helicobacter pylori HPAG1 4098918 YP_626996.1 CDS HPAG1_0255 NC_008086.1 259164 260621 D outer membrane protein HopF 259164..260621 Helicobacter pylori HPAG1 4098920 YP_626997.1 CDS HPAG1_0256 NC_008086.1 260631 262052 D outer membrane protein HopG 260631..262052 Helicobacter pylori HPAG1 4098921 YP_626998.1 CDS HPAG1_0257 NC_008086.1 262151 263386 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 262151..263386 Helicobacter pylori HPAG1 4098922 YP_626999.1 CDS HPAG1_0258 NC_008086.1 263383 263811 D hypothetical protein 263383..263811 Helicobacter pylori HPAG1 4098923 YP_627000.1 CDS HPAG1_0259 NC_008086.1 263804 264475 D hypothetical protein 263804..264475 Helicobacter pylori HPAG1 4098924 YP_627001.1 CDS HPAG1_0260 NC_008086.1 264472 265527 D hypothetical protein 264472..265527 Helicobacter pylori HPAG1 4098925 YP_627002.1 CDS xseA NC_008086.1 265540 266802 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 265540..266802 Helicobacter pylori HPAG1 4099221 YP_627003.1 CDS HPAG1_0262 NC_008086.1 266821 267993 R type III adenine methyltransferase complement(266821..267993) Helicobacter pylori HPAG1 4099222 YP_627004.1 CDS HPAG1_0263 NC_008086.1 267986 268444 R hypothetical protein complement(267986..268444) Helicobacter pylori HPAG1 4099223 YP_627005.1 CDS HPAG1_0264 NC_008086.1 268586 269185 D hypothetical protein 268586..269185 Helicobacter pylori HPAG1 4099224 YP_627006.1 CDS HPAG1_0265 NC_008086.1 269297 270055 D type II DNA modification enzyme 269297..270055 Helicobacter pylori HPAG1 4099225 YP_627007.1 CDS HPAG1_0266 NC_008086.1 270128 272698 D ATP-dependent protease binding subunit/heat shock protein 270128..272698 Helicobacter pylori HPAG1 4099226 YP_627008.1 CDS HPAG1_0267 NC_008086.1 272753 273475 D cytochrome c biogenesis protein 272753..273475 Helicobacter pylori HPAG1 4099227 YP_627009.1 CDS HPAG1_0268 NC_008086.1 273485 274621 D dihydroorotase 273485..274621 Helicobacter pylori HPAG1 4099228 YP_627010.1 CDS HPAG1_0269 NC_008086.1 274606 275835 D Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; chlorohydrolase 274606..275835 Helicobacter pylori HPAG1 4099229 YP_627011.1 CDS HPAG1_0270 NC_008086.1 275896 276138 D hypothetical protein 275896..276138 Helicobacter pylori HPAG1 4099230 YP_627012.1 CDS HPAG1_0271 NC_008086.1 276148 277461 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 276148..277461 Helicobacter pylori HPAG1 4099231 YP_627013.1 CDS HPAG1_0272 NC_008086.1 277500 278153 D hypothetical protein 277500..278153 Helicobacter pylori HPAG1 4099232 YP_627014.1 CDS HPAG1_0273 NC_008086.1 278146 279129 D hypothetical protein 278146..279129 Helicobacter pylori HPAG1 4099233 YP_627015.1 CDS HPAG1_0274 NC_008086.1 279119 279652 D hypothetical protein 279119..279652 Helicobacter pylori HPAG1 4099234 YP_627016.1 CDS HPAG1_0275 NC_008086.1 279649 280188 D hypothetical protein 279649..280188 Helicobacter pylori HPAG1 4099235 YP_627017.1 CDS HPAG1_0276 NC_008086.1 280201 280602 D hypothetical protein 280201..280602 Helicobacter pylori HPAG1 4099236 YP_627018.1 CDS HPAG1_0277 NC_008086.1 280639 281931 D ATP-dependent nuclease 280639..281931 Helicobacter pylori HPAG1 4099237 YP_627019.1 CDS HPAG1_0278 NC_008086.1 281919 282464 D hypothetical protein 281919..282464 Helicobacter pylori HPAG1 4099238 YP_627020.1 CDS HPAG1_0279 NC_008086.1 282535 282786 D ferrodoxin 282535..282786 Helicobacter pylori HPAG1 4099239 YP_627021.1 CDS HPAG1_0280 NC_008086.1 282796 284250 D guanosine pentaphosphate phosphohydrolase 282796..284250 Helicobacter pylori HPAG1 4099240 YP_627022.1 CDS HPAG1_0281 NC_008086.1 284247 285269 D lipopolysaccharide heptosyltransferase-1 284247..285269 Helicobacter pylori HPAG1 4098869 YP_627023.1 CDS HPAG1_0282 NC_008086.1 285266 286252 D acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; essential for survival; plays a role in cell responses to environmental changes; lipid A biosynthesis lauroyl acyltransferase 285266..286252 Helicobacter pylori HPAG1 4098870 YP_627024.1 CDS tgt NC_008086.1 286351 287466 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(286351..287466) Helicobacter pylori HPAG1 4098871 YP_627025.1 CDS HPAG1_0284 NC_008086.1 287517 288959 D hypothetical protein 287517..288959 Helicobacter pylori HPAG1 4098872 YP_627026.1 CDS aroB NC_008086.1 288964 289995 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 288964..289995 Helicobacter pylori HPAG1 4098873 YP_627027.1 CDS HPAG1_0286 NC_008086.1 289986 291557 D hypothetical protein 289986..291557 Helicobacter pylori HPAG1 4098874 YP_627028.1 CDS HPAG1_0287 NC_008086.1 291554 292810 D hypothetical protein 291554..292810 Helicobacter pylori HPAG1 4098875 YP_627029.1 CDS HPAG1_0288 NC_008086.1 292797 294449 D cell division protein 292797..294449 Helicobacter pylori HPAG1 4098876 YP_627030.1 CDS HPAG1_0289 NC_008086.1 294452 294970 D hypothetical protein 294452..294970 Helicobacter pylori HPAG1 4098877 YP_627031.1 CDS HPAG1_0290 NC_008086.1 294983 295456 D hypothetical protein 294983..295456 Helicobacter pylori HPAG1 4098878 YP_627032.1 CDS HPAG1_0291 NC_008086.1 295524 304220 D putative vacuolating cytotoxin (VacA)-like protein 295524..304220 Helicobacter pylori HPAG1 4098879 YP_627033.1 CDS HPAG1_0292 NC_008086.1 304268 305485 D diaminopimelate decarboxylase 304268..305485 Helicobacter pylori HPAG1 4098880 YP_627034.1 CDS HPAG1_0293 NC_008086.1 305490 305780 D hypothetical protein 305490..305780 Helicobacter pylori HPAG1 4098881 YP_627035.1 CDS HPAG1_0294 NC_008086.1 305793 306665 D hypothetical protein 305793..306665 Helicobacter pylori HPAG1 4098882 YP_627036.1 CDS HPAG1_0295 NC_008086.1 306666 308345 D para-aminobenzoate synthetase 306666..308345 Helicobacter pylori HPAG1 4098883 YP_627037.1 CDS amiE NC_008086.1 308534 309553 D aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 308534..309553 Helicobacter pylori HPAG1 4098884 YP_627038.1 CDS flgL NC_008086.1 309635 312121 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(309635..312121) Helicobacter pylori HPAG1 4098885 YP_627039.1 CDS rplU NC_008086.1 312354 312668 D 50S ribosomal protein L21 312354..312668 Helicobacter pylori HPAG1 4098886 YP_627040.1 CDS rpmA NC_008086.1 312683 312949 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 312683..312949 Helicobacter pylori HPAG1 4098887 YP_627041.1 CDS HPAG1_0300 NC_008086.1 313066 314715 D periplasmic dipeptide-binding protein 313066..314715 Helicobacter pylori HPAG1 4098673 YP_627042.1 CDS HPAG1_0301 NC_008086.1 314726 315730 D dipeptide permease protein 314726..315730 Helicobacter pylori HPAG1 4098674 YP_627043.1 CDS HPAG1_0302 NC_008086.1 315730 316587 D dipeptide permease protein 315730..316587 Helicobacter pylori HPAG1 4098675 YP_627044.1 CDS HPAG1_0303 NC_008086.1 316599 317462 D dipeptide ABC transporter 316599..317462 Helicobacter pylori HPAG1 4098676 YP_627045.1 CDS HPAG1_0304 NC_008086.1 317459 318265 D dipeptide ABC transporter 317459..318265 Helicobacter pylori HPAG1 4098677 YP_627046.1 CDS obgE NC_008086.1 318284 319366 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 318284..319366 Helicobacter pylori HPAG1 4098678 YP_627047.1 CDS HPAG1_0306 NC_008086.1 319408 320403 D hypothetical protein 319408..320403 Helicobacter pylori HPAG1 4098679 YP_627048.1 CDS HPAG1_0307 NC_008086.1 320649 321203 D hypothetical protein 320649..321203 Helicobacter pylori HPAG1 4098680 YP_627049.1 CDS HPAG1_0308 NC_008086.1 321213 322505 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 321213..322505 Helicobacter pylori HPAG1 4098681 YP_627050.1 CDS HPAG1_0309 NC_008086.1 322510 322773 D hypothetical protein 322510..322773 Helicobacter pylori HPAG1 4098682 YP_627051.1 CDS HPAG1_0310 NC_008086.1 322789 323193 D hypothetical protein 322789..323193 Helicobacter pylori HPAG1 4098683 YP_627052.1 CDS HPAG1_0311 NC_008086.1 323277 324155 D hypothetical protein 323277..324155 Helicobacter pylori HPAG1 4098684 YP_627053.1 CDS HPAG1_0312 NC_008086.1 324168 325049 D hypothetical protein 324168..325049 Helicobacter pylori HPAG1 4098685 YP_627054.1 CDS HPAG1_0313 NC_008086.1 325103 325795 R type II restriction enzyme complement(325103..325795) Helicobacter pylori HPAG1 4098686 YP_627055.1 CDS HPAG1_0314 NC_008086.1 325806 326915 R DNA methylase complement(325806..326915) Helicobacter pylori HPAG1 4098687 YP_627056.1 CDS HPAG1_0315 NC_008086.1 327010 327396 D hypothetical protein 327010..327396 Helicobacter pylori HPAG1 4098688 YP_627057.1 CDS HPAG1_0316 NC_008086.1 327396 328361 D ATP/GTP binding protein 327396..328361 Helicobacter pylori HPAG1 4098689 YP_627058.1 CDS HPAG1_0317 NC_008086.1 328367 329512 R nitrite extrusion protein complement(328367..329512) Helicobacter pylori HPAG1 4098690 YP_627059.1 CDS HPAG1_0318 NC_008086.1 330274 330531 R hypothetical protein complement(330274..330531) Helicobacter pylori HPAG1 4098691 YP_627060.1 CDS HPAG1_0319 NC_008086.1 330524 330652 R hypothetical protein complement(330524..330652) Helicobacter pylori HPAG1 4098692 YP_627061.1 CDS HPAG1_0320 NC_008086.1 331459 333582 R outer membrane protein complement(331459..333582) Helicobacter pylori HPAG1 4098519 YP_627062.1 CDS HPAG1_0321 NC_008086.1 333867 334622 R hypothetical protein complement(333867..334622) Helicobacter pylori HPAG1 4098520 YP_627063.1 CDS argS NC_008086.1 334685 336310 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(334685..336310) Helicobacter pylori HPAG1 4098521 YP_627064.1 CDS HPAG1_0323 NC_008086.1 336313 336552 R sec-independent protein translocase protein complement(336313..336552) Helicobacter pylori HPAG1 4098522 YP_627065.1 CDS gmk NC_008086.1 336623 337243 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(336623..337243) Helicobacter pylori HPAG1 4098523 YP_627066.1 CDS HPAG1_0325 NC_008086.1 337236 338660 R poly E-rich protein complement(337236..338660) Helicobacter pylori HPAG1 4098524 YP_627067.1 CDS HPAG1_0326 NC_008086.1 338802 339344 D membrane-associated cation-independent thermostable nuclease; preferentially cleaves ss-DNA; involved in DNA transformation; nuclease NucT 338802..339344 Helicobacter pylori HPAG1 4098525 YP_627068.1 CDS HPAG1_0327 NC_008086.1 339353 340117 R outer membrane protein HorC complement(339353..340117) Helicobacter pylori HPAG1 4098526 YP_627069.1 CDS flgH NC_008086.1 340220 340933 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 340220..340933 Helicobacter pylori HPAG1 4098527 YP_627070.1 CDS HPAG1_0329 NC_008086.1 340952 341641 D CMP-N-acetylneuraminic acid synthetase 340952..341641 Helicobacter pylori HPAG1 4098528 YP_627071.1 CDS HPAG1_0330 NC_008086.1 341632 342507 D CMP-N-acetylneuraminic acid synthetase 341632..342507 Helicobacter pylori HPAG1 4098529 YP_627072.1 CDS HPAG1_0331 NC_008086.1 342504 343046 D flagellar biosynthesis protein G 342504..343046 Helicobacter pylori HPAG1 4098530 YP_627073.1 CDS lpxK NC_008086.1 342979 343917 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(342979..343917) Helicobacter pylori HPAG1 4098531 YP_627074.1 CDS HPAG1_0333 NC_008086.1 343914 344696 R catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase complement(343914..344696) Helicobacter pylori HPAG1 4098532 YP_627075.1 CDS HPAG1_0334 NC_008086.1 344945 345937 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 344945..345937 Helicobacter pylori HPAG1 4098534 YP_627076.1 CDS HPAG1_0335 NC_008086.1 345961 346767 D cell division inhibitor 345961..346767 Helicobacter pylori HPAG1 4098535 YP_627077.1 CDS minE NC_008086.1 346764 346997 D works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 346764..346997 Helicobacter pylori HPAG1 4098536 YP_627078.1 CDS HPAG1_0337 NC_008086.1 347009 347809 D DNA processing chain A 347009..347809 Helicobacter pylori HPAG1 4099346 YP_627079.1 CDS HPAG1_0338 NC_008086.1 347806 348210 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 347806..348210 Helicobacter pylori HPAG1 4099347 YP_627080.1 CDS HPAG1_0339 NC_008086.1 348318 348908 D cysteine-rich protein H 348318..348908 Helicobacter pylori HPAG1 4099348 YP_627081.1 CDS HPAG1_0340 NC_008086.1 349095 349433 D hypothetical protein 349095..349433 Helicobacter pylori HPAG1 4099349 YP_627082.1 CDS HPAG1_0341 NC_008086.1 349417 349977 D hypothetical protein 349417..349977 Helicobacter pylori HPAG1 4099350 YP_627083.1 CDS HPAG1_0342 NC_008086.1 350080 350961 R hypothetical protein complement(350080..350961) Helicobacter pylori HPAG1 4099351 YP_627084.1 CDS HPAG1_0343 NC_008086.1 350961 352511 R single-stranded-DNA specific exonuclease complement(350961..352511) Helicobacter pylori HPAG1 4099352 YP_627085.1 CDS pyrG NC_008086.1 352521 354137 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(352521..354137) Helicobacter pylori HPAG1 4099353 YP_627086.1 CDS HPAG1_0345 NC_008086.1 354395 355057 D hypothetical protein 354395..355057 Helicobacter pylori HPAG1 4099354 YP_627087.1 CDS fliF NC_008086.1 355101 356804 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 355101..356804 Helicobacter pylori HPAG1 4099355 YP_627088.1 CDS fliG NC_008086.1 356822 357853 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 356822..357853 Helicobacter pylori HPAG1 4099356 YP_627089.1 CDS fliH NC_008086.1 357840 358616 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 357840..358616 Helicobacter pylori HPAG1 4099357 YP_627090.1 CDS HPAG1_0349 NC_008086.1 358613 360469 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 358613..360469 Helicobacter pylori HPAG1 4099358 YP_627091.1 CDS HPAG1_0350 NC_008086.1 360466 362274 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 360466..362274 Helicobacter pylori HPAG1 4099359 YP_627092.1 CDS HPAG1_0351 NC_008086.1 362289 362978 D hypothetical protein 362289..362978 Helicobacter pylori HPAG1 4099360 YP_627093.1 CDS HPAG1_0352 NC_008086.1 362989 363285 D hypothetical protein 362989..363285 Helicobacter pylori HPAG1 4099361 YP_627094.1 CDS HPAG1_0353 NC_008086.1 363326 363400 R hypothetical protein complement(363326..363400) Helicobacter pylori HPAG1 4099362 YP_627095.1 CDS HPAG1_0354 NC_008086.1 363538 363750 D hypothetical protein 363538..363750 Helicobacter pylori HPAG1 4099363 YP_627096.1 CDS HPAG1_0355 NC_008086.1 363968 364777 R flagellar basal-body rod protein complement(363968..364777) Helicobacter pylori HPAG1 4099364 YP_627097.1 CDS HPAG1_0356 NC_008086.1 364832 366112 R alpha-ketoglutarate permease complement(364832..366112) Helicobacter pylori HPAG1 4099365 YP_627098.1 CDS HPAG1_0357 NC_008086.1 366295 368907 R cell division protein complement(366295..368907) Helicobacter pylori HPAG1 4099041 YP_627099.1 CDS HPAG1_0358 NC_008086.1 368877 371210 R hypothetical protein complement(368877..371210) Helicobacter pylori HPAG1 4099042 YP_627100.1 CDS HPAG1_0359 NC_008086.1 371207 373135 R catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase complement(371207..373135) Helicobacter pylori HPAG1 4099043 YP_627101.1 CDS HPAG1_0360 NC_008086.1 373179 374021 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(373179..374021) Helicobacter pylori HPAG1 4099044 YP_627102.1 CDS HPAG1_0361 NC_008086.1 373987 374694 R hemolysin complement(373987..374694) Helicobacter pylori HPAG1 4099045 YP_627103.1 CDS HPAG1_0362 NC_008086.1 374694 375209 R hypothetical protein complement(374694..375209) Helicobacter pylori HPAG1 4099046 YP_627104.1 CDS pyrB NC_008086.1 375276 376199 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 375276..376199 Helicobacter pylori HPAG1 4099047 YP_627105.1 CDS HPAG1_0364 NC_008086.1 376496 377935 D outer membrane protein HofB 376496..377935 Helicobacter pylori HPAG1 4099048 YP_627106.1 CDS HPAG1_0365 NC_008086.1 378026 379681 D multidrug resistance protein 378026..379681 Helicobacter pylori HPAG1 4099049 YP_627107.1 CDS HPAG1_0366 NC_008086.1 379675 380298 D hypothetical protein 379675..380298 Helicobacter pylori HPAG1 4099050 YP_627108.1 CDS HPAG1_0367 NC_008086.1 380302 380871 D hypothetical protein 380302..380871 Helicobacter pylori HPAG1 4099051 YP_627109.1 CDS HPAG1_0368 NC_008086.1 381004 382116 D hypothetical protein 381004..382116 Helicobacter pylori HPAG1 4099052 YP_627110.1 CDS HPAG1_0369 NC_008086.1 382139 382822 D hypothetical protein 382139..382822 Helicobacter pylori HPAG1 4099053 YP_627111.1 CDS HPAG1_0370 NC_008086.1 382880 383875 D high affinity nickel transport protein 382880..383875 Helicobacter pylori HPAG1 4099054 YP_627112.1 CDS HPAG1_0371 NC_008086.1 383879 384400 R hypothetical protein complement(383879..384400) Helicobacter pylori HPAG1 4099055 YP_627113.1 CDS HPAG1_0372 NC_008086.1 384536 385852 D hypothetical protein 384536..385852 Helicobacter pylori HPAG1 4099056 YP_627114.1 CDS HPAG1_0373 NC_008086.1 386024 386404 R hypothetical protein complement(386024..386404) Helicobacter pylori HPAG1 4099057 YP_627115.1 CDS HPAG1_0374 NC_008086.1 386503 386703 R copper ion binding protein complement(386503..386703) Helicobacter pylori HPAG1 4099058 YP_627116.1 CDS HPAG1_0375 NC_008086.1 386704 388941 R copper-transporting ATPase complement(386704..388941) Helicobacter pylori HPAG1 4099059 YP_627117.1 CDS HPAG1_0376 NC_008086.1 388938 389651 R phosphatidylserine synthase complement(388938..389651) Helicobacter pylori HPAG1 4098926 YP_627118.1 CDS HPAG1_0377 NC_008086.1 389641 389895 R hypothetical protein complement(389641..389895) Helicobacter pylori HPAG1 4098927 YP_627119.1 CDS HPAG1_0378 NC_008086.1 389898 391796 R cell division protein complement(389898..391796) Helicobacter pylori HPAG1 4098928 YP_627120.1 CDS prmA NC_008086.1 391805 392794 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(391805..392794) Helicobacter pylori HPAG1 4098929 YP_627121.1 CDS HPAG1_0380 NC_008086.1 392795 393169 R chemotaxis protein complement(392795..393169) Helicobacter pylori HPAG1 4098930 YP_627122.1 CDS HPAG1_0381 NC_008086.1 393464 394066 D outer membrane protein HorD 393464..394066 Helicobacter pylori HPAG1 4098931 YP_627123.1 CDS HPAG1_0382 NC_008086.1 394198 394605 R hypothetical protein complement(394198..394605) Helicobacter pylori HPAG1 4098933 YP_627124.1 CDS HPAG1_0383 NC_008086.1 394608 394838 R hypothetical protein complement(394608..394838) Helicobacter pylori HPAG1 4098934 YP_627125.1 CDS gidB NC_008086.1 394832 395368 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(394832..395368) Helicobacter pylori HPAG1 4098935 YP_627126.1 CDS queA NC_008086.1 395365 396402 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(395365..396402) Helicobacter pylori HPAG1 4098936 YP_627127.1 CDS HPAG1_0386 NC_008086.1 396403 397125 R hypothetical protein complement(396403..397125) Helicobacter pylori HPAG1 4098937 YP_627128.1 CDS HPAG1_0387 NC_008086.1 397118 397600 R mediates the export of protein precursors bearing twin-arginine signal peptides; sec-independent translocase complement(397118..397600) Helicobacter pylori HPAG1 4098938 YP_627129.1 CDS ruvB NC_008086.1 397668 398678 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(397668..398678) Helicobacter pylori HPAG1 4098939 YP_627130.1 CDS panB NC_008086.1 398679 399491 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(398679..399491) Helicobacter pylori HPAG1 4098940 YP_627131.1 CDS HPAG1_0390 NC_008086.1 399640 400362 D hypothetical protein 399640..400362 Helicobacter pylori HPAG1 4098941 YP_627132.1 CDS HPAG1_0391 NC_008086.1 400340 401209 D hypothetical protein 400340..401209 Helicobacter pylori HPAG1 4098942 YP_627133.1 CDS HPAG1_0392 NC_008086.1 401239 402162 D hypothetical protein 401239..402162 Helicobacter pylori HPAG1 4098943 YP_627134.1 CDS HPAG1_0393 NC_008086.1 402172 403494 D hypothetical protein 402172..403494 Helicobacter pylori HPAG1 4098944 YP_627135.1 CDS minC NC_008086.1 403431 404084 D blocks the formation of polar Z-ring septums; septum formation inhibitor 403431..404084 Helicobacter pylori HPAG1 4098771 YP_627136.1 CDS lpxC NC_008086.1 404081 404968 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 404081..404968 Helicobacter pylori HPAG1 4098772 YP_627137.1 CDS HPAG1_0396 NC_008086.1 404990 405463 D hypothetical protein 404990..405463 Helicobacter pylori HPAG1 4098773 YP_627138.1 CDS HPAG1_0397 NC_008086.1 405517 406398 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 405517..406398 Helicobacter pylori HPAG1 4098774 YP_627139.1 CDS HPAG1_0398 NC_008086.1 406370 406639 D hypothetical protein 406370..406639 Helicobacter pylori HPAG1 4098775 YP_627140.1 CDS infB NC_008086.1 406636 409470 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 406636..409470 Helicobacter pylori HPAG1 4098776 YP_627141.1 CDS rbfA NC_008086.1 409470 409805 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 409470..409805 Helicobacter pylori HPAG1 4098777 YP_627142.1 CDS HPAG1_0401 NC_008086.1 409798 410238 D hypothetical protein 409798..410238 Helicobacter pylori HPAG1 4098778 YP_627143.1 CDS HPAG1_0402 NC_008086.1 410346 412334 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(410346..412334) Helicobacter pylori HPAG1 4098779 YP_627144.1 CDS HPAG1_0403 NC_008086.1 412537 413649 D hypothetical protein 412537..413649 Helicobacter pylori HPAG1 4098780 YP_627145.1 CDS HPAG1_0404 NC_008086.1 413988 414659 D putative transcriptional regulator 413988..414659 Helicobacter pylori HPAG1 4098781 YP_627146.1 CDS HPAG1_0405 NC_008086.1 415172 416218 R hypothetical protein complement(415172..416218) Helicobacter pylori HPAG1 4098782 YP_627147.1 CDS flhA NC_008086.1 416246 418447 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(416246..418447) Helicobacter pylori HPAG1 4098783 YP_627148.1 CDS rpsO NC_008086.1 418585 418857 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 418585..418857 Helicobacter pylori HPAG1 4098784 YP_627149.1 CDS HPAG1_0408 NC_008086.1 418888 420177 D hypothetical protein 418888..420177 Helicobacter pylori HPAG1 4098785 YP_627150.1 CDS HPAG1_0409 NC_008086.1 420308 420811 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 420308..420811 Helicobacter pylori HPAG1 4098786 YP_627151.1 CDS HPAG1_0410 NC_008086.1 420825 421898 D proline peptidase 420825..421898 Helicobacter pylori HPAG1 4098787 YP_627152.1 CDS HPAG1_0411 NC_008086.1 421895 422386 D 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 421895..422386 Helicobacter pylori HPAG1 4098788 YP_627153.1 CDS flhF NC_008086.1 422380 423759 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 422380..423759 Helicobacter pylori HPAG1 4098789 YP_627154.1 CDS HPAG1_0413 NC_008086.1 423756 424640 D ATP-binding protein 423756..424640 Helicobacter pylori HPAG1 4098790 YP_627155.1 CDS HPAG1_0414 NC_008086.1 424653 424928 R hypothetical protein complement(424653..424928) Helicobacter pylori HPAG1 4098791 YP_627156.1 CDS fliA NC_008086.1 424937 425704 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor directs late flagellar biosynthesis genes; flagellar biosynthesis sigma factor 424937..425704 Helicobacter pylori HPAG1 4098792 YP_627157.1 CDS fliM NC_008086.1 425697 426761 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 425697..426761 Helicobacter pylori HPAG1 4098793 YP_627158.1 CDS HPAG1_0417 NC_008086.1 426765 427628 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein FliY 426765..427628 Helicobacter pylori HPAG1 4098794 YP_627159.1 CDS HPAG1_0418 NC_008086.1 427657 428193 D hypothetical protein 427657..428193 Helicobacter pylori HPAG1 4098795 YP_627160.1 CDS HPAG1_0419 NC_008086.1 428190 428687 D hypothetical protein 428190..428687 Helicobacter pylori HPAG1 4098796 YP_627161.1 CDS HPAG1_0420 NC_008086.1 428707 429159 R ferric uptake regulation protein complement(428707..429159) Helicobacter pylori HPAG1 4098797 YP_627162.1 CDS HPAG1_0421 NC_008086.1 429319 430494 R recombination factor protein RarA complement(429319..430494) Helicobacter pylori HPAG1 4098798 YP_627163.1 CDS HPAG1_0422 NC_008086.1 430491 430862 R putative heat shock protein complement(430491..430862) Helicobacter pylori HPAG1 4098799 YP_627164.1 CDS HPAG1_0423 NC_008086.1 430872 431738 R co-chaperone-curved DNA binding protein A complement(430872..431738) Helicobacter pylori HPAG1 4098800 YP_627165.1 CDS HPAG1_0424 NC_008086.1 431906 433156 D hypothetical protein 431906..433156 Helicobacter pylori HPAG1 4098801 YP_627166.1 CDS HPAG1_0425 NC_008086.1 433164 434000 R hypothetical protein complement(433164..434000) Helicobacter pylori HPAG1 4098802 YP_627167.1 CDS HPAG1_0426 NC_008086.1 434256 435152 R response regulator complement(434256..435152) Helicobacter pylori HPAG1 4098803 YP_627168.1 CDS ispDF NC_008086.1 435174 436394 R bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein complement(435174..436394) Helicobacter pylori HPAG1 4098804 YP_627169.1 CDS HPAG1_0428 NC_008086.1 436416 437846 R protease DO complement(436416..437846) Helicobacter pylori HPAG1 4098805 YP_627170.1 CDS HPAG1_0429 NC_008086.1 437890 439332 R amino acid permease complement(437890..439332) Helicobacter pylori HPAG1 4098806 YP_627171.1 CDS HPAG1_0430 NC_008086.1 439546 440148 R phosphatidylglycerophosphate synthase complement(439546..440148) Helicobacter pylori HPAG1 4098807 YP_627172.1 CDS HPAG1_0431 NC_008086.1 440082 440690 R hypothetical protein complement(440082..440690) Helicobacter pylori HPAG1 4098808 YP_627173.1 CDS HPAG1_0432 NC_008086.1 440700 441488 R Acts on the hydroxyl group at position 7 of the steroid frame; 7-alpha-hydroxysteroid dehydrogenase complement(440700..441488) Helicobacter pylori HPAG1 4098809 YP_627174.1 CDS HPAG1_0433 NC_008086.1 441485 442387 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(441485..442387) Helicobacter pylori HPAG1 4099321 YP_627175.1 CDS HPAG1_0434 NC_008086.1 442402 443736 R putative zinc protease complement(442402..443736) Helicobacter pylori HPAG1 4099322 YP_627176.1 CDS HPAG1_0435 NC_008086.1 443733 444788 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(443733..444788) Helicobacter pylori HPAG1 4099323 YP_627177.1 CDS HPAG1_0436 NC_008086.1 444826 446853 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(444826..446853) Helicobacter pylori HPAG1 4099324 YP_627178.1 CDS HPAG1_0437 NC_008086.1 447285 448544 R type I restriction enzyme S protein complement(447285..448544) Helicobacter pylori HPAG1 4099326 YP_627179.1 CDS HPAG1_0438 NC_008086.1 448537 450168 R type I restriction enzyme M protein complement(448537..450168) Helicobacter pylori HPAG1 4099327 YP_627180.1 CDS HPAG1_0439 NC_008086.1 450161 452467 R type I restriction enzyme R protein complement(450161..452467) Helicobacter pylori HPAG1 4099328 YP_627181.1 CDS HPAG1_0440 NC_008086.1 452561 453292 R type I restriction enzyme R protein complement(452561..453292) Helicobacter pylori HPAG1 4099329 YP_627182.1 CDS HPAG1_0441 NC_008086.1 453340 455235 R hypothetical protein complement(453340..455235) Helicobacter pylori HPAG1 4099330 YP_627183.1 CDS HPAG1_0442 NC_008086.1 455261 456028 R hypothetical protein complement(455261..456028) Helicobacter pylori HPAG1 4099331 YP_627184.1 CDS HPAG1_0443 NC_008086.1 456038 456388 R hypothetical protein complement(456038..456388) Helicobacter pylori HPAG1 4099332 YP_627185.1 CDS HPAG1_0444 NC_008086.1 456354 457841 R hypothetical protein complement(456354..457841) Helicobacter pylori HPAG1 4099333 YP_627186.1 CDS HPAG1_0445 NC_008086.1 457853 458341 R hypothetical protein complement(457853..458341) Helicobacter pylori HPAG1 4099334 YP_627187.1 CDS HPAG1_0446 NC_008086.1 458326 460062 R oligoendopeptidase F complement(458326..460062) Helicobacter pylori HPAG1 4099335 YP_627188.1 CDS HPAG1_0447 NC_008086.1 460159 461409 R glutathione-regulated potassium-efflux system protein complement(460159..461409) Helicobacter pylori HPAG1 4099336 YP_627189.1 CDS HPAG1_0448 NC_008086.1 461563 461754 R hypothetical protein complement(461563..461754) Helicobacter pylori HPAG1 4099337 YP_627190.1 CDS HPAG1_0449 NC_008086.1 461729 462289 R outer membrane protein HorE complement(461729..462289) Helicobacter pylori HPAG1 4099338 YP_627191.1 CDS HPAG1_0450 NC_008086.1 462512 463252 D molybdenum ABC transporter ModA 462512..463252 Helicobacter pylori HPAG1 4099366 YP_627192.1 CDS HPAG1_0451 NC_008086.1 463274 463948 D molybdenum ABC transporter ModB 463274..463948 Helicobacter pylori HPAG1 4099367 YP_627193.1 CDS HPAG1_0452 NC_008086.1 463945 464742 D molybdenum ABC transporter ModD 463945..464742 Helicobacter pylori HPAG1 4099368 YP_627194.1 CDS gltX NC_008086.1 464858 466249 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(464858..466249) Helicobacter pylori HPAG1 4099369 YP_627195.1 CDS HPAG1_0454 NC_008086.1 466367 467473 D outer membrane protein HopJ 466367..467473 Helicobacter pylori HPAG1 4099370 YP_627196.1 CDS HPAG1_0455 NC_008086.1 467482 469119 D type II adenine specific methyltransferase 467482..469119 Helicobacter pylori HPAG1 4099371 YP_627197.1 CDS HPAG1_0456 NC_008086.1 469085 469927 D hypothetical protein 469085..469927 Helicobacter pylori HPAG1 4099372 YP_627198.1 CDS HPAG1_0457 NC_008086.1 469973 471772 D GTP-binding protein 469973..471772 Helicobacter pylori HPAG1 4099373 YP_627199.1 CDS HPAG1_0458 NC_008086.1 471788 472717 D type II adenine specific DNA methyltransferase 471788..472717 Helicobacter pylori HPAG1 4099374 YP_627200.1 CDS HPAG1_0459 NC_008086.1 472719 473303 D hypothetical protein 472719..473303 Helicobacter pylori HPAG1 4099375 YP_627201.1 CDS HPAG1_0460 NC_008086.1 473435 473917 D type II DNA modification enzyme 473435..473917 Helicobacter pylori HPAG1 4099376 YP_627202.1 CDS HPAG1_0461 NC_008086.1 473986 474930 R catalase like protein complement(473986..474930) Helicobacter pylori HPAG1 4099377 YP_627203.1 CDS HPAG1_0462 NC_008086.1 475216 476802 D outer membrane protein HofC 475216..476802 Helicobacter pylori HPAG1 4099378 YP_627204.1 CDS HPAG1_0463 NC_008086.1 476860 478272 D outer membrane protein HofD 476860..478272 Helicobacter pylori HPAG1 4099379 YP_627205.1 CDS HPAG1_0464 NC_008086.1 478414 481407 D hypothetical protein 478414..481407 Helicobacter pylori HPAG1 4099380 YP_627206.1 CDS HPAG1_0465 NC_008086.1 481409 482335 D hypothetical protein 481409..482335 Helicobacter pylori HPAG1 4099381 YP_627207.1 CDS HPAG1_0466 NC_008086.1 482709 483845 R putative potassium channel protein complement(482709..483845) Helicobacter pylori HPAG1 4099382 YP_627208.1 CDS rpmB NC_008086.1 483995 484183 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(483995..484183) Helicobacter pylori HPAG1 4099383 YP_627209.1 CDS HPAG1_0468 NC_008086.1 484283 485119 R neuraminyllactose-binding hemagglutinin complement(484283..485119) Helicobacter pylori HPAG1 4099384 YP_627210.1 CDS mraY NC_008086.1 485246 486307 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 485246..486307 Helicobacter pylori HPAG1 4099385 YP_627211.1 CDS murD NC_008086.1 486309 487577 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 486309..487577 Helicobacter pylori HPAG1 4098595 YP_627212.1 CDS HPAG1_0471 NC_008086.1 487574 487834 R hypothetical protein complement(487574..487834) Helicobacter pylori HPAG1 4098596 YP_627213.1 CDS HPAG1_0472 NC_008086.1 487824 488225 R hypothetical protein complement(487824..488225) Helicobacter pylori HPAG1 4098597 YP_627214.1 CDS HPAG1_0473 NC_008086.1 488456 489784 D sodium- and chloride-dependent transporter 488456..489784 Helicobacter pylori HPAG1 4098598 YP_627215.1 CDS HPAG1_0474 NC_008086.1 489795 491123 D sodium- and chloride-dependent transporter 489795..491123 Helicobacter pylori HPAG1 4098599 YP_627216.1 CDS HPAG1_0475 NC_008086.1 491138 492205 D phospholipase A1 491138..492205 Helicobacter pylori HPAG1 4098600 YP_627217.1 CDS HPAG1_0476 NC_008086.1 492262 493386 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 492262..493386 Helicobacter pylori HPAG1 4098601 YP_627218.1 CDS gyrB NC_008086.1 493399 495720 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 493399..495720 Helicobacter pylori HPAG1 4098602 YP_627219.1 CDS HPAG1_0478 NC_008086.1 495766 496758 D hypothetical protein 495766..496758 Helicobacter pylori HPAG1 4098603 YP_627220.1 CDS HPAG1_0479 NC_008086.1 496745 497500 D hypothetical protein 496745..497500 Helicobacter pylori HPAG1 4098604 YP_627221.1 CDS HPAG1_0480 NC_008086.1 497716 498927 D putative outer membrane protein 497716..498927 Helicobacter pylori HPAG1 4098605 YP_627222.1 CDS HPAG1_0481 NC_008086.1 498927 499553 D hypothetical protein 498927..499553 Helicobacter pylori HPAG1 4098606 YP_627223.1 CDS HPAG1_0482 NC_008086.1 499594 500913 D hypothetical protein 499594..500913 Helicobacter pylori HPAG1 4098607 YP_627224.1 CDS HPAG1_0483 NC_008086.1 500915 502294 D glycolate oxidase subunit 500915..502294 Helicobacter pylori HPAG1 4098608 YP_627225.1 CDS HPAG1_0484 NC_008086.1 502317 503081 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 502317..503081 Helicobacter pylori HPAG1 4098609 YP_627226.1 CDS HPAG1_0485 NC_008086.1 503415 503531 D urease-enhancing factor 503415..503531 Helicobacter pylori HPAG1 4098610 YP_627227.1 CDS HPAG1_0486 NC_008086.1 503801 505246 R glutamine synthetase complement(503801..505246) Helicobacter pylori HPAG1 4098611 YP_627228.1 CDS HPAG1_0487 NC_008086.1 505385 507481 D hypothetical protein 505385..507481 Helicobacter pylori HPAG1 4098612 YP_627229.1 CDS rplI NC_008086.1 507547 507996 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 507547..507996 Helicobacter pylori HPAG1 4098613 YP_627230.1 CDS HPAG1_0489 NC_008086.1 508000 508542 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 508000..508542 Helicobacter pylori HPAG1 4097923 YP_627231.1 CDS hslU NC_008086.1 508542 509873 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 508542..509873 Helicobacter pylori HPAG1 4097924 YP_627232.1 CDS era NC_008086.1 509873 510778 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 509873..510778 Helicobacter pylori HPAG1 4097925 YP_627233.1 CDS HPAG1_0492 NC_008086.1 510775 511767 D hypothetical protein 510775..511767 Helicobacter pylori HPAG1 4097926 YP_627234.1 CDS HPAG1_0493 NC_008086.1 511846 512700 R hypothetical protein complement(511846..512700) Helicobacter pylori HPAG1 4097927 YP_627235.1 CDS HPAG1_0494 NC_008086.1 512719 512958 D IS606 transposase 512719..512958 Helicobacter pylori HPAG1 4097928 YP_627236.1 CDS HPAG1_0495 NC_008086.1 513044 513391 D cag pathogenicity island protein 1 513044..513391 Helicobacter pylori HPAG1 4097929 YP_627237.1 CDS HPAG1_0496 NC_008086.1 513407 514165 D HP0521B-like protein 513407..514165 Helicobacter pylori HPAG1 4097930 YP_627238.1 CDS HPAG1_0497 NC_008086.1 514158 515603 D cag pathogenicity island protein 3 514158..515603 Helicobacter pylori HPAG1 4097931 YP_627239.1 CDS HPAG1_0498 NC_008086.1 515613 516122 D cag pathogenicity island protein 4 515613..516122 Helicobacter pylori HPAG1 4097932 YP_627240.1 CDS HPAG1_0499 NC_008086.1 516241 518487 R cag pathogenicity island protein 5 complement(516241..518487) Helicobacter pylori HPAG1 4097933 YP_627241.1 CDS HPAG1_0500 NC_008086.1 518496 519488 R cag pathogenicity island encoded protein/ATPase protein complement(518496..519488) Helicobacter pylori HPAG1 4097934 YP_627242.1 CDS HPAG1_0501 NC_008086.1 519493 520092 R cag pathogenicity island protein Z complement(519493..520092) Helicobacter pylori HPAG1 4097935 YP_627243.1 CDS HPAG1_0502 NC_008086.1 520227 524114 R cag pathogenicity island protein Y complement(520227..524114) Helicobacter pylori HPAG1 4097936 YP_627244.1 CDS HPAG1_0503 NC_008086.1 524173 526161 R cag pathogenicity island protein Y complement(524173..526161) Helicobacter pylori HPAG1 4097937 YP_627245.1 CDS HPAG1_0504 NC_008086.1 526176 527747 R cag pathogenicity island protein X complement(526176..527747) Helicobacter pylori HPAG1 4097938 YP_627246.1 CDS HPAG1_0505 NC_008086.1 527797 529404 R cag pathogenicity island protein W complement(527797..529404) Helicobacter pylori HPAG1 4097939 YP_627247.1 CDS HPAG1_0506 NC_008086.1 529409 530167 R cag pathogenicity island protein V complement(529409..530167) Helicobacter pylori HPAG1 4097940 YP_627248.1 CDS HPAG1_0507 NC_008086.1 530565 531215 D cag pathogenicity island protein U 530565..531215 Helicobacter pylori HPAG1 4097941 YP_627249.1 CDS HPAG1_0508 NC_008086.1 531228 532070 D cag pathogenicity island protein T 531228..532070 Helicobacter pylori HPAG1 4097942 YP_627251.1 CDS HPAG1_0510 NC_008086.1 532270 532869 R cag pathogenicity island protein S complement(532270..532869) Helicobacter pylori HPAG1 4098946 YP_627252.1 CDS HPAG1_0511 NC_008086.1 533301 533681 R cag pathogenicity island protein Q complement(533301..533681) Helicobacter pylori HPAG1 4098947 YP_627253.1 CDS HPAG1_0512 NC_008086.1 534882 536012 D cag pathogenicity island protein M 534882..536012 Helicobacter pylori HPAG1 4098948 YP_627254.1 CDS HPAG1_0513 NC_008086.1 536027 536947 D cag pathogenicity island protein N 536027..536947 Helicobacter pylori HPAG1 4098949 YP_627255.1 CDS HPAG1_0514 NC_008086.1 537029 537742 R cag pathogenicity island protein L complement(537029..537742) Helicobacter pylori HPAG1 4098950 YP_627256.1 CDS HPAG1_0515 NC_008086.1 537739 538884 R cag pathogenicity island protein I complement(537739..538884) Helicobacter pylori HPAG1 4098951 YP_627257.1 CDS HPAG1_0516 NC_008086.1 538895 540007 R cag pathogenicity island protein H complement(538895..540007) Helicobacter pylori HPAG1 4098952 YP_627258.1 CDS HPAG1_0517 NC_008086.1 540024 540452 R cag pathogenicity island protein G complement(540024..540452) Helicobacter pylori HPAG1 4098953 YP_627259.1 CDS HPAG1_0518 NC_008086.1 540507 541313 R cag pathogenicity island protein F complement(540507..541313) Helicobacter pylori HPAG1 4098954 YP_627260.1 CDS HPAG1_0519 NC_008086.1 541315 542631 R cag pathogenicity island protein E complement(541315..542631) Helicobacter pylori HPAG1 4098955 YP_627261.1 CDS HPAG1_0520 NC_008086.1 542661 544265 R cag pathogenicity island protein E complement(542661..544265) Helicobacter pylori HPAG1 4098956 YP_627262.1 CDS HPAG1_0521 NC_008086.1 544274 544924 R cag pathogenicity island protein D complement(544274..544924) Helicobacter pylori HPAG1 4098957 YP_627263.1 CDS HPAG1_0522 NC_008086.1 544899 545246 R cag pathogenicity island protein C complement(544899..545246) Helicobacter pylori HPAG1 4098958 YP_627264.1 CDS HPAG1_0523 NC_008086.1 545391 545618 R cag pathogenicity island protein B complement(545391..545618) Helicobacter pylori HPAG1 4098959 YP_627265.1 CDS HPAG1_0524 NC_008086.1 546049 549651 D cytotoxin-associated protein A 546049..549651 Helicobacter pylori HPAG1 4098960 YP_627266.1 CDS HPAG1_0525 NC_008086.1 549714 549863 R transposase B-like protein complement(549714..549863) Helicobacter pylori HPAG1 4098961 YP_627267.1 CDS HPAG1_0526 NC_008086.1 549878 550033 R transposase B-like protein complement(549878..550033) Helicobacter pylori HPAG1 4098962 YP_627268.1 CDS HPAG1_0527 NC_008086.1 550135 550902 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(550135..550902) Helicobacter pylori HPAG1 4098963 YP_627269.1 CDS rho NC_008086.1 550939 552255 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(550939..552255) Helicobacter pylori HPAG1 4098145 YP_627270.1 CDS rpmE NC_008086.1 552519 552722 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 552519..552722 Helicobacter pylori HPAG1 4098146 YP_627271.1 CDS HPAG1_0530 NC_008086.1 552747 553610 D hypothetical protein 552747..553610 Helicobacter pylori HPAG1 4098147 YP_627272.1 CDS HPAG1_0531 NC_008086.1 553623 554306 D hypothetical protein 553623..554306 Helicobacter pylori HPAG1 4098148 YP_627273.1 CDS HPAG1_0532 NC_008086.1 554319 555284 D hypothetical protein 554319..555284 Helicobacter pylori HPAG1 4098149 YP_627274.1 CDS HPAG1_0533 NC_008086.1 555281 556102 D hypothetical protein 555281..556102 Helicobacter pylori HPAG1 4098150 YP_627275.1 CDS HPAG1_0534 NC_008086.1 556166 556603 R hypothetical protein complement(556166..556603) Helicobacter pylori HPAG1 4098151 YP_627276.1 CDS HPAG1_0535 NC_008086.1 557048 557986 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(557048..557986) Helicobacter pylori HPAG1 4098152 YP_627277.1 CDS HPAG1_0536 NC_008086.1 558008 559246 R FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II complement(558008..559246) Helicobacter pylori HPAG1 4098153 YP_627278.1 CDS HPAG1_0537 NC_008086.1 559262 559369 R hypothetical protein complement(559262..559369) Helicobacter pylori HPAG1 4098154 YP_627279.1 CDS acpP NC_008086.1 559558 559794 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(559558..559794) Helicobacter pylori HPAG1 4098155 YP_627281.1 CDS fabG NC_008086.1 560025 560768 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(560025..560768) Helicobacter pylori HPAG1 4098157 YP_627282.1 CDS rpsU NC_008086.1 560810 561022 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(560810..561022) Helicobacter pylori HPAG1 4098158 YP_627283.1 CDS HPAG1_0542 NC_008086.1 561122 562372 R hypothetical protein complement(561122..562372) Helicobacter pylori HPAG1 4098159 YP_627284.1 CDS HPAG1_0543 NC_008086.1 562544 562786 D hypothetical protein 562544..562786 Helicobacter pylori HPAG1 4098160 YP_627285.1 CDS HPAG1_0544 NC_008086.1 562810 563457 R hypothetical protein complement(562810..563457) Helicobacter pylori HPAG1 4098161 YP_627286.1 CDS dapF NC_008086.1 563564 564385 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(563564..564385) Helicobacter pylori HPAG1 4098162 YP_627287.1 CDS HPAG1_0546 NC_008086.1 564500 565549 D membrane protein 564500..565549 Helicobacter pylori HPAG1 4098163 YP_627288.1 CDS HPAG1_0547 NC_008086.1 565907 566674 R hypothetical protein complement(565907..566674) Helicobacter pylori HPAG1 4098164 YP_627289.1 CDS HPAG1_0548 NC_008086.1 566818 567918 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(566818..567918) Helicobacter pylori HPAG1 4099404 YP_627290.1 CDS HPAG1_0549 NC_008086.1 567920 569410 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(567920..569410) Helicobacter pylori HPAG1 4099405 YP_627291.1 CDS HPAG1_0550 NC_008086.1 569458 570036 R hypothetical protein complement(569458..570036) Helicobacter pylori HPAG1 4099406 YP_627292.1 CDS HPAG1_0551 NC_008086.1 570051 570590 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(570051..570590) Helicobacter pylori HPAG1 4099407 YP_627293.1 CDS HPAG1_0552 NC_008086.1 570648 570980 R hypothetical protein complement(570648..570980) Helicobacter pylori HPAG1 4099408 YP_627294.1 CDS HPAG1_0553 NC_008086.1 571025 571486 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(571025..571486) Helicobacter pylori HPAG1 4099409 YP_627295.1 CDS HPAG1_0554 NC_008086.1 571507 572205 R hypothetical protein complement(571507..572205) Helicobacter pylori HPAG1 4099410 YP_627296.1 CDS HPAG1_0555 NC_008086.1 572214 573086 R signal peptidase I complement(572214..573086) Helicobacter pylori HPAG1 4099411 YP_627297.1 CDS HPAG1_0556 NC_008086.1 573086 573964 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(573086..573964) Helicobacter pylori HPAG1 4099412 YP_627298.1 CDS HPAG1_0557 NC_008086.1 574038 576068 R hypothetical protein complement(574038..576068) Helicobacter pylori HPAG1 4099413 YP_627299.1 CDS HPAG1_0558 NC_008086.1 576074 576631 R hypothetical protein complement(576074..576631) Helicobacter pylori HPAG1 4099414 YP_627300.1 CDS HPAG1_0559 NC_008086.1 576635 577753 R hypothetical protein complement(576635..577753) Helicobacter pylori HPAG1 4099415 YP_627301.1 CDS HPAG1_0560 NC_008086.1 577729 578748 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(577729..578748) Helicobacter pylori HPAG1 4099416 YP_627302.1 CDS HPAG1_0561 NC_008086.1 578752 579717 R putative siderophore-mediated iron transport protein complement(578752..579717) Helicobacter pylori HPAG1 4099417 YP_627303.1 CDS HPAG1_0562 NC_008086.1 579701 580582 R hypothetical protein complement(579701..580582) Helicobacter pylori HPAG1 4099418 YP_627304.1 CDS HPAG1_0563 NC_008086.1 580579 580950 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein complement(580579..580950) Helicobacter pylori HPAG1 4099419 YP_627305.1 CDS HPAG1_0564 NC_008086.1 581032 581595 R endonuclease III complement(581032..581595) Helicobacter pylori HPAG1 4099420 YP_627306.1 CDS HPAG1_0565 NC_008086.1 581678 581914 R hypothetical protein complement(581678..581914) Helicobacter pylori HPAG1 4099421 YP_627307.1 CDS HPAG1_0567 NC_008086.1 581916 584849 R hypothetical protein complement(581916..584849) Helicobacter pylori HPAG1 4098353 YP_627308.1 CDS HPAG1_0566 NC_008086.1 584767 585756 D aminodeoxychorismate lyase 584767..585756 Helicobacter pylori HPAG1 4099422 YP_627309.1 CDS oorD NC_008086.1 585941 586282 D 2-oxoglutarate-acceptor oxidoreductase subunit OorD 585941..586282 Helicobacter pylori HPAG1 4098354 YP_627310.1 CDS oorA NC_008086.1 586282 587409 D 2-oxoglutarate-acceptor oxidoreductase subunit OorA 586282..587409 Helicobacter pylori HPAG1 4098355 YP_627311.1 CDS oorB NC_008086.1 587411 588232 D 2-oxoglutarate-acceptor oxidoreductase subunit OorB 587411..588232 Helicobacter pylori HPAG1 4098356 YP_627312.1 CDS oorC NC_008086.1 588232 588786 D 2-oxoglutarate-acceptor oxidoreductase subunit OorC 588232..588786 Helicobacter pylori HPAG1 4098357 YP_627313.1 CDS HPAG1_0572 NC_008086.1 588896 589579 D hypothetical protein 588896..589579 Helicobacter pylori HPAG1 4098358 YP_627314.1 CDS HPAG1_0573 NC_008086.1 589645 590673 D hypothetical protein 589645..590673 Helicobacter pylori HPAG1 4098359 YP_627315.1 CDS HPAG1_0574 NC_008086.1 590818 590982 D hypothetical protein 590818..590982 Helicobacter pylori HPAG1 4098360 YP_627316.1 CDS HPAG1_0575 NC_008086.1 590991 592463 D hypothetical protein 590991..592463 Helicobacter pylori HPAG1 4098361 YP_627317.1 CDS HPAG1_0576 NC_008086.1 592938 593516 D Tip-alpha; forms a dimer; found in culture supernatant; induces TNF-alpha and NF-kappa-B in cell cultures of mouse cells; tumor necrosis factor alpha-inducing protein 592938..593516 Helicobacter pylori HPAG1 4098362 YP_627318.1 CDS HPAG1_0577 NC_008086.1 593519 595498 R penicillin-binding protein 1A complement(593519..595498) Helicobacter pylori HPAG1 4098363 YP_627319.1 CDS HPAG1_0578 NC_008086.1 595498 596619 R 8-amino-7-oxononanoate synthase complement(595498..596619) Helicobacter pylori HPAG1 4098364 YP_627320.1 CDS HPAG1_0579 NC_008086.1 596642 597943 R hemolysin secretion protein complement(596642..597943) Helicobacter pylori HPAG1 4098365 YP_627321.1 CDS HPAG1_0580 NC_008086.1 598015 598929 R multidrug resistance protein complement(598015..598929) Helicobacter pylori HPAG1 4098366 YP_627322.1 CDS HPAG1_0581 NC_008086.1 598895 599791 R multidrug resistance protein complement(598895..599791) Helicobacter pylori HPAG1 4098367 YP_627323.1 CDS HPAG1_0582 NC_008086.1 599960 601492 D FlaA; structural flagella protein; in Helicobacter flagella are composed of flagellin A and flagellin B; the amounts of each seem to be controlled by environmental conditions; flagellin A 599960..601492 Helicobacter pylori HPAG1 4098368 YP_627324.1 CDS HPAG1_0583 NC_008086.1 601610 602266 D 3-methyladenine DNA glycosylase 601610..602266 Helicobacter pylori HPAG1 4098369 YP_627325.1 CDS HPAG1_0584 NC_008086.1 602263 602880 D hypothetical protein 602263..602880 Helicobacter pylori HPAG1 4098370 YP_627326.1 CDS hemE NC_008086.1 602946 603968 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 602946..603968 Helicobacter pylori HPAG1 4098371 YP_627327.1 CDS HPAG1_0586 NC_008086.1 603978 605411 D hypothetical protein 603978..605411 Helicobacter pylori HPAG1 4098372 YP_627328.1 CDS HPAG1_0587 NC_008086.1 605422 606126 D membrane fusion protein of the hefABC efflux system HefB 605422..606126 Helicobacter pylori HPAG1 4099202 YP_627329.1 CDS HPAG1_0588 NC_008086.1 606139 609225 D cytoplasmic pump protein of the hefABC efflux system HefC 606139..609225 Helicobacter pylori HPAG1 4099203 YP_627330.1 CDS HPAG1_0589 NC_008086.1 609222 609791 D hypothetical protein 609222..609791 Helicobacter pylori HPAG1 4099204 YP_627331.1 CDS HPAG1_0590 NC_008086.1 609910 619467 D putative vacuolating cytotoxin (VacA)-like protein 609910..619467 Helicobacter pylori HPAG1 4099205 YP_627332.1 CDS HPAG1_0591 NC_008086.1 619529 620038 R hypothetical protein complement(619529..620038) Helicobacter pylori HPAG1 4099206 YP_627333.1 CDS HPAG1_0592 NC_008086.1 620046 620285 R ABC transporter, permease complement(620046..620285) Helicobacter pylori HPAG1 4099207 YP_627334.1 CDS HPAG1_0593 NC_008086.1 620285 620761 R ABC transporter, ATP-binding protein complement(620285..620761) Helicobacter pylori HPAG1 4099208 YP_627335.1 CDS HPAG1_0594 NC_008086.1 620745 620981 R ABC transporter, ATP-binding protein complement(620745..620981) Helicobacter pylori HPAG1 4099209 YP_627336.1 CDS HPAG1_0595 NC_008086.1 621287 621619 R hypothetical protein complement(621287..621619) Helicobacter pylori HPAG1 4099210 YP_627337.1 CDS ligA NC_008086.1 621744 623714 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(621744..623714) Helicobacter pylori HPAG1 4099211 YP_627338.1 CDS HPAG1_0597 NC_008086.1 623792 624733 D chemotaxis protein 623792..624733 Helicobacter pylori HPAG1 4099212 YP_627339.1 CDS aspS NC_008086.1 624768 626501 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 624768..626501 Helicobacter pylori HPAG1 4099213 YP_627340.1 CDS adk NC_008086.1 626518 627093 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 626518..627093 Helicobacter pylori HPAG1 4099214 YP_627341.1 CDS HPAG1_0600 NC_008086.1 627119 628117 D putative lipopolysaccharide biosynthesis protein 627119..628117 Helicobacter pylori HPAG1 4099215 YP_627342.1 CDS HPAG1_0601 NC_008086.1 628137 628718 D putative lipopolysaccharide biosynthesis protein 628137..628718 Helicobacter pylori HPAG1 4099216 YP_627343.1 CDS HPAG1_0602 NC_008086.1 628657 629463 D putative lipopolysaccharide biosynthesis protein 628657..629463 Helicobacter pylori HPAG1 4099217 YP_627344.1 CDS HPAG1_0603 NC_008086.1 629518 630039 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 629518..630039 Helicobacter pylori HPAG1 4099218 YP_627345.1 CDS HPAG1_0604 NC_008086.1 630187 632493 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(630187..632493) Helicobacter pylori HPAG1 4099219 YP_627346.1 CDS HPAG1_0605 NC_008086.1 632451 632816 R hypothetical protein complement(632451..632816) Helicobacter pylori HPAG1 4099220 YP_627347.1 CDS murC NC_008086.1 632816 634165 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(632816..634165) Helicobacter pylori HPAG1 4098849 YP_627348.1 CDS HPAG1_0607 NC_008086.1 634158 635285 R hypothetical protein complement(634158..635285) Helicobacter pylori HPAG1 4098850 YP_627349.1 CDS ispG NC_008086.1 635405 636484 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 635405..636484 Helicobacter pylori HPAG1 4098851 YP_627350.1 CDS HPAG1_0609 NC_008086.1 636487 637692 D tetrahydrodipicolinate N-succinyltransferase 636487..637692 Helicobacter pylori HPAG1 4098852 YP_627351.1 CDS HPAG1_0610 NC_008086.1 637704 638762 D hypothetical protein 637704..638762 Helicobacter pylori HPAG1 4098853 YP_627352.1 CDS HPAG1_0611 NC_008086.1 638995 639501 D hypothetical protein 638995..639501 Helicobacter pylori HPAG1 4098854 YP_627353.1 CDS HPAG1_0612 NC_008086.1 639522 641042 D hypothetical protein 639522..641042 Helicobacter pylori HPAG1 4098855 YP_627354.1 CDS HPAG1_0613 NC_008086.1 641088 641672 R modulator of drug activity complement(641088..641672) Helicobacter pylori HPAG1 4098856 YP_627355.1 CDS HPAG1_0614 NC_008086.1 641803 642957 D quinone-reactive Ni/Fe hydrogenase HydA 641803..642957 Helicobacter pylori HPAG1 4098857 YP_627356.1 CDS HPAG1_0615 NC_008086.1 642967 644703 D quinone-reactive Ni/Fe hydrogenase HydB 642967..644703 Helicobacter pylori HPAG1 4098858 YP_627357.1 CDS HPAG1_0616 NC_008086.1 644717 645391 D quinone-reactive Ni/Fe hydrogenase HydC 644717..645391 Helicobacter pylori HPAG1 4098859 YP_627358.1 CDS HPAG1_0617 NC_008086.1 645388 645924 D quinone-reactive Ni/Fe hydrogenase HydD 645388..645924 Helicobacter pylori HPAG1 4098860 YP_627359.1 CDS HPAG1_0618 NC_008086.1 645926 647464 D hypothetical protein 645926..647464 Helicobacter pylori HPAG1 4098861 YP_627360.1 CDS HPAG1_0619 NC_008086.1 647469 647882 R hypothetical protein complement(647469..647882) Helicobacter pylori HPAG1 4098862 YP_627361.1 CDS HPAG1_0620 NC_008086.1 648011 648463 R hypothetical protein complement(648011..648463) Helicobacter pylori HPAG1 4098863 YP_627362.1 CDS HPAG1_0621 NC_008086.1 648650 649573 D outer membrane protein HopH 648650..649573 Helicobacter pylori HPAG1 4098864 YP_627363.1 CDS HPAG1_0622 NC_008086.1 649640 650326 R hypothetical protein complement(649640..650326) Helicobacter pylori HPAG1 4098865 YP_627364.1 CDS HPAG1_0623 NC_008086.1 650389 651666 D poly(A) polymerase 650389..651666 Helicobacter pylori HPAG1 4098866 YP_627365.1 CDS HPAG1_0624 NC_008086.1 651674 651748 D hypothetical protein 651674..651748 Helicobacter pylori HPAG1 4098867 YP_627366.1 CDS HPAG1_0625 NC_008086.1 651763 652620 D putative 3-hydroxyacid dehydrogenase 651763..652620 Helicobacter pylori HPAG1 4098868 YP_627367.1 CDS HPAG1_0626 NC_008086.1 652622 652738 D NAD(P)H-flavin oxidoreductase 652622..652738 Helicobacter pylori HPAG1 4098752 YP_627368.1 CDS HPAG1_0627 NC_008086.1 652717 653274 D NAD(P)H-flavin oxidoreductase 652717..653274 Helicobacter pylori HPAG1 4098753 YP_627369.1 CDS HPAG1_0628 NC_008086.1 653440 654759 D charges one glutamine molecule and pairs it with tRNA(Gln); glutamylglutaminyl-tRNA synthetase 653440..654759 Helicobacter pylori HPAG1 4098754 YP_627370.1 CDS HPAG1_0629 NC_008086.1 654756 655049 D hypothetical protein 654756..655049 Helicobacter pylori HPAG1 4098755 YP_627371.1 CDS HPAG1_0630 NC_008086.1 655058 656740 D soluble lytic murein transglycosylase 655058..656740 Helicobacter pylori HPAG1 4098756 YP_627372.1 CDS HPAG1_0631 NC_008086.1 656737 657558 D UDP-glucose pyrophosphorylase 656737..657558 Helicobacter pylori HPAG1 4098757 YP_627373.1 CDS HPAG1_0632 NC_008086.1 657569 657976 D hypothetical protein 657569..657976 Helicobacter pylori HPAG1 4098758 YP_627374.1 CDS HPAG1_0633 NC_008086.1 657979 659247 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 657979..659247 Helicobacter pylori HPAG1 4098759 YP_627375.1 CDS aspA NC_008086.1 659305 660711 D catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 659305..660711 Helicobacter pylori HPAG1 4098760 YP_627376.1 CDS HPAG1_0635 NC_008086.1 660717 661346 D hypothetical protein 660717..661346 Helicobacter pylori HPAG1 4098761 YP_627377.1 CDS HPAG1_0636 NC_008086.1 661355 662590 R alpha 1,3-fucosyltransferase complement(661355..662590) Helicobacter pylori HPAG1 4098762 YP_627378.1 CDS HPAG1_0637 NC_008086.1 662721 663344 R phosphoserine phosphatase complement(662721..663344) Helicobacter pylori HPAG1 4098763 YP_627379.1 CDS HPAG1_0638 NC_008086.1 663359 663862 R nonheme iron-containing ferritin complement(663359..663862) Helicobacter pylori HPAG1 4098764 YP_627380.1 CDS HPAG1_0639 NC_008086.1 664161 665243 D hypothetical protein 664161..665243 Helicobacter pylori HPAG1 4098765 YP_627381.1 CDS HPAG1_0640 NC_008086.1 665326 668076 D protective surface antigen D15 665326..668076 Helicobacter pylori HPAG1 4098766 YP_627382.1 CDS HPAG1_0641 NC_008086.1 667988 669139 D hypothetical protein 667988..669139 Helicobacter pylori HPAG1 4098767 YP_627383.1 CDS HPAG1_0642 NC_008086.1 669145 670443 D processing protease 669145..670443 Helicobacter pylori HPAG1 4098768 YP_627384.1 CDS gatB NC_008086.1 670440 671867 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 670440..671867 Helicobacter pylori HPAG1 4098769 YP_627385.1 CDS HPAG1_0644 NC_008086.1 671867 673111 D hypothetical protein 671867..673111 Helicobacter pylori HPAG1 4098770 YP_627386.1 CDS HPAG1_0645 NC_008086.1 673122 674138 D hypothetical protein 673122..674138 Helicobacter pylori HPAG1 4098829 YP_627387.1 CDS rnhA NC_008086.1 674125 674556 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 674125..674556 Helicobacter pylori HPAG1 4098830 YP_627388.1 CDS rnc NC_008086.1 674565 675287 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 674565..675287 Helicobacter pylori HPAG1 4098831 YP_627389.1 CDS HPAG1_0648 NC_008086.1 675284 676381 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 675284..676381 Helicobacter pylori HPAG1 4098832 YP_627390.1 CDS HPAG1_0649 NC_008086.1 676419 676934 D hypothetical protein 676419..676934 Helicobacter pylori HPAG1 4098833 YP_627391.1 CDS HPAG1_0650 NC_008086.1 676934 678307 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 676934..678307 Helicobacter pylori HPAG1 4098834 YP_627392.1 CDS HPAG1_0651 NC_008086.1 678304 679605 D glycerol-3-phosphate dehydrogenase 678304..679605 Helicobacter pylori HPAG1 4098835 YP_627393.1 CDS HPAG1_0652 NC_008086.1 679681 680334 D hypothetical protein 679681..680334 Helicobacter pylori HPAG1 4098836 YP_627394.1 CDS HPAG1_0653 NC_008086.1 680286 684455 D hypothetical protein 680286..684455 Helicobacter pylori HPAG1 4098837 YP_627395.1 CDS HPAG1_0654 NC_008086.1 684699 685511 D outer membrane protein HorF 684699..685511 Helicobacter pylori HPAG1 4098838 YP_627396.1 CDS HPAG1_0655 NC_008086.1 685670 686842 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 685670..686842 Helicobacter pylori HPAG1 4098839 YP_627397.1 CDS HPAG1_0656 NC_008086.1 686979 687929 D hypothetical protein 686979..687929 Helicobacter pylori HPAG1 4098840 YP_627398.1 CDS HPAG1_0657 NC_008086.1 687947 688813 D hypothetical protein 687947..688813 Helicobacter pylori HPAG1 4098841 YP_627399.1 CDS HPAG1_0658 NC_008086.1 688821 689891 D integrase-recombinase protein 688821..689891 Helicobacter pylori HPAG1 4098842 YP_627400.1 CDS HPAG1_0659 NC_008086.1 689954 690460 R methylated-DNA--protein-cysteine methyltransferase complement(689954..690460) Helicobacter pylori HPAG1 4098843 YP_627401.1 CDS HPAG1_0660 NC_008086.1 690464 691231 R hypothetical protein complement(690464..691231) Helicobacter pylori HPAG1 4098844 YP_627402.1 CDS HPAG1_0661 NC_008086.1 691345 692292 R putative lipopolysaccharide biosynthesis protein complement(691345..692292) Helicobacter pylori HPAG1 4098845 YP_627403.1 CDS HPAG1_0662 NC_008086.1 692354 694720 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(692354..694720) Helicobacter pylori HPAG1 4098846 YP_627404.1 CDS HPAG1_0663 NC_008086.1 694886 695380 R hypothetical protein complement(694886..695380) Helicobacter pylori HPAG1 4098847 YP_627405.1 CDS HPAG1_0664 NC_008086.1 695420 695860 R hypothetical protein complement(695420..695860) Helicobacter pylori HPAG1 4098848 YP_627406.1 CDS HPAG1_0665 NC_008086.1 696123 696629 R hypothetical protein complement(696123..696629) Helicobacter pylori HPAG1 4098202 YP_627407.1 CDS HPAG1_0666 NC_008086.1 696669 697049 R hypothetical protein complement(696669..697049) Helicobacter pylori HPAG1 4098203 YP_627408.1 CDS glmU NC_008086.1 697205 698506 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(697205..698506) Helicobacter pylori HPAG1 4098204 YP_627409.1 CDS fliP NC_008086.1 698588 699334 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 698588..699334 Helicobacter pylori HPAG1 4098205 YP_627410.1 CDS HPAG1_0669 NC_008086.1 699373 701676 R iron(III) dicitrate transport protein complement(699373..701676) Helicobacter pylori HPAG1 4098206 YP_627411.1 CDS HPAG1_0670 NC_008086.1 701927 703861 R iron(II) transport protein complement(701927..703861) Helicobacter pylori HPAG1 4098207 YP_627412.1 CDS HPAG1_0671 NC_008086.1 703975 704805 D hypothetical protein 703975..704805 Helicobacter pylori HPAG1 4098208 YP_627413.1 CDS HPAG1_0672 NC_008086.1 704859 706073 D putative type II cytosine specific methyltransferase 704859..706073 Helicobacter pylori HPAG1 4098209 YP_627414.1 CDS HPAG1_0673 NC_008086.1 706076 706948 D putative type II restriction enzyme 706076..706948 Helicobacter pylori HPAG1 4098210 YP_627415.1 CDS HPAG1_0674 NC_008086.1 707082 707441 D hypothetical protein 707082..707441 Helicobacter pylori HPAG1 4098211 YP_627416.1 CDS HPAG1_0675 NC_008086.1 707722 708897 D acetyl coenzyme A acetyltransferase 707722..708897 Helicobacter pylori HPAG1 4098212 YP_627417.1 CDS HPAG1_0676 NC_008086.1 708908 709606 D succinyl-CoA-transferase subunit A 708908..709606 Helicobacter pylori HPAG1 4098213 YP_627418.1 CDS HPAG1_0677 NC_008086.1 709603 710226 D succinyl-CoA-transferase subunit B 709603..710226 Helicobacter pylori HPAG1 4098214 YP_627419.1 CDS HPAG1_0678 NC_008086.1 710245 711609 D short-chain fatty acids transporter 710245..711609 Helicobacter pylori HPAG1 4098215 YP_627420.1 CDS HPAG1_0679 NC_008086.1 711734 712735 D putative outer membrane protein 711734..712735 Helicobacter pylori HPAG1 4098216 YP_627421.1 CDS HPAG1_0680 NC_008086.1 712970 715111 D hydantoin utilization protein A 712970..715111 Helicobacter pylori HPAG1 4098217 YP_627422.1 CDS HPAG1_0681 NC_008086.1 715123 717420 D N-methylhydantoinase 715123..717420 Helicobacter pylori HPAG1 4098218 YP_627423.1 CDS HPAG1_0682 NC_008086.1 717431 717937 D hypothetical protein 717431..717937 Helicobacter pylori HPAG1 4098219 YP_627424.1 CDS HPAG1_0683 NC_008086.1 718125 718316 D hypothetical protein 718125..718316 Helicobacter pylori HPAG1 4098220 YP_627425.1 CDS HPAG1_0684 NC_008086.1 718326 719354 D hypothetical protein 718326..719354 Helicobacter pylori HPAG1 4098693 YP_627426.1 CDS HPAG1_0685 NC_008086.1 719347 719733 D diacylglycerol kinase 719347..719733 Helicobacter pylori HPAG1 4098694 YP_627427.1 CDS HPAG1_0686 NC_008086.1 719749 722232 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 719749..722232 Helicobacter pylori HPAG1 4098695 YP_627428.1 CDS HPAG1_0687 NC_008086.1 722229 722705 D hypothetical protein 722229..722705 Helicobacter pylori HPAG1 4098696 YP_627429.1 CDS HPAG1_0688 NC_008086.1 722702 723847 D transcriptional activator of flagella proteins 722702..723847 Helicobacter pylori HPAG1 4098697 YP_627430.1 CDS HPAG1_0689 NC_008086.1 723974 724504 D hypothetical protein 723974..724504 Helicobacter pylori HPAG1 4098698 YP_627431.1 CDS uvrA NC_008086.1 724748 727573 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(724748..727573) Helicobacter pylori HPAG1 4098699 YP_627432.1 CDS HPAG1_0691 NC_008086.1 727738 728559 D outer membrane protein HopE 727738..728559 Helicobacter pylori HPAG1 4098700 YP_627433.1 CDS mraW NC_008086.1 728737 729663 D S-adenosyl-methyltransferase MraW 728737..729663 Helicobacter pylori HPAG1 4098701 YP_627434.1 CDS HPAG1_0693 NC_008086.1 729684 730028 D hypothetical protein 729684..730028 Helicobacter pylori HPAG1 4098702 YP_627435.1 CDS HPAG1_0694 NC_008086.1 730184 731086 D hypothetical protein 730184..731086 Helicobacter pylori HPAG1 4098703 YP_627436.1 CDS HPAG1_0695 NC_008086.1 731310 733313 D putative outer membrane protein HomB 731310..733313 Helicobacter pylori HPAG1 4098704 YP_627437.1 CDS HPAG1_0696 NC_008086.1 733504 734724 D hypothetical protein 733504..734724 Helicobacter pylori HPAG1 4098705 YP_627438.1 CDS HPAG1_0697 NC_008086.1 734724 734972 D hypothetical protein 734724..734972 Helicobacter pylori HPAG1 4098706 YP_627439.1 CDS HPAG1_0698 NC_008086.1 734978 735427 D hypothetical protein 734978..735427 Helicobacter pylori HPAG1 4098707 YP_627440.1 CDS HPAG1_0699 NC_008086.1 735439 736683 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(735439..736683) Helicobacter pylori HPAG1 4098708 YP_627441.1 CDS HPAG1_0700 NC_008086.1 736686 737408 R ABC transporter, ATP-binding protein complement(736686..737408) Helicobacter pylori HPAG1 4098709 YP_627442.1 CDS HPAG1_0701 NC_008086.1 737421 737822 R hypothetical protein complement(737421..737822) Helicobacter pylori HPAG1 4098710 YP_627443.1 CDS HPAG1_0702 NC_008086.1 737819 739537 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(737819..739537) Helicobacter pylori HPAG1 4098711 YP_627444.1 CDS HPAG1_0703 NC_008086.1 739606 740238 R hypothetical protein complement(739606..740238) Helicobacter pylori HPAG1 4098712 YP_627445.1 CDS HPAG1_0704 NC_008086.1 740445 740930 D hypothetical protein 740445..740930 Helicobacter pylori HPAG1 4098713 YP_627446.1 CDS HPAG1_0705 NC_008086.1 740958 741419 D hypothetical protein 740958..741419 Helicobacter pylori HPAG1 4098714 YP_627447.1 CDS HPAG1_0706 NC_008086.1 741785 743638 D outer membrane protein SabB 741785..743638 Helicobacter pylori HPAG1 4098715 YP_627448.1 CDS HPAG1_0707 NC_008086.1 743705 745036 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(743705..745036) Helicobacter pylori HPAG1 4098716 YP_627449.1 CDS HPAG1_0708 NC_008086.1 745165 746163 D L-asparaginase II 745165..746163 Helicobacter pylori HPAG1 4098717 YP_627450.1 CDS HPAG1_0709 NC_008086.1 746303 748258 R outer membrane protein SabA complement(746303..748258) Helicobacter pylori HPAG1 4098718 YP_627451.1 CDS HPAG1_0710 NC_008086.1 748468 749385 R outer membrane protein complement(748468..749385) Helicobacter pylori HPAG1 4098719 YP_627452.1 CDS HPAG1_0711 NC_008086.1 749355 750341 R transcriptional regulator complement(749355..750341) Helicobacter pylori HPAG1 4098720 YP_627453.1 CDS HPAG1_0712 NC_008086.1 750435 751451 R hypothetical protein complement(750435..751451) Helicobacter pylori HPAG1 4098721 YP_627454.1 CDS HPAG1_0713 NC_008086.1 751487 752554 R hypothetical protein complement(751487..752554) Helicobacter pylori HPAG1 4098722 YP_627455.1 CDS HPAG1_0714 NC_008086.1 752563 752868 R hypothetical protein complement(752563..752868) Helicobacter pylori HPAG1 4098723 YP_627456.1 CDS HPAG1_0715 NC_008086.1 752960 754678 R hypothetical protein complement(752960..754678) Helicobacter pylori HPAG1 4098724 YP_627457.1 CDS HPAG1_0716 NC_008086.1 754675 755430 R hypothetical protein complement(754675..755430) Helicobacter pylori HPAG1 4098725 YP_627458.1 CDS HPAG1_0717 NC_008086.1 755492 756550 R hypothetical protein complement(755492..756550) Helicobacter pylori HPAG1 4098726 YP_627459.1 CDS HPAG1_0718 NC_008086.1 756637 757956 R hypothetical protein complement(756637..757956) Helicobacter pylori HPAG1 4098727 YP_627460.1 CDS HPAG1_0719 NC_008086.1 757958 758419 R xanthine guanine phosphoribosyl transferase complement(757958..758419) Helicobacter pylori HPAG1 4098728 YP_627461.1 CDS HPAG1_0720 NC_008086.1 758428 759537 R phosphoserine aminotransferase complement(758428..759537) Helicobacter pylori HPAG1 4098729 YP_627462.1 CDS HPAG1_0721 NC_008086.1 759687 760163 D phosphatidylglycerophosphatase A 759687..760163 Helicobacter pylori HPAG1 4098730 YP_627463.1 CDS ddl NC_008086.1 760241 761284 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 760241..761284 Helicobacter pylori HPAG1 4098731 YP_627464.1 CDS HPAG1_0723 NC_008086.1 761284 762009 D 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase 761284..762009 Helicobacter pylori HPAG1 4098810 YP_627465.1 CDS HPAG1_0724 NC_008086.1 761996 763477 D UDP-MurNac-pentapeptide presynthetase 761996..763477 Helicobacter pylori HPAG1 4098811 YP_627466.1 CDS HPAG1_0725 NC_008086.1 763487 763972 D histidine triad (HIT) family protein 763487..763972 Helicobacter pylori HPAG1 4098812 YP_627467.1 CDS HPAG1_0726 NC_008086.1 764037 764993 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 764037..764993 Helicobacter pylori HPAG1 4098813 YP_627468.1 CDS HPAG1_0727 NC_008086.1 765054 766199 R rod shape-determining protein complement(765054..766199) Helicobacter pylori HPAG1 4098815 YP_627469.1 CDS HPAG1_0728 NC_008086.1 766222 766842 R hypothetical protein complement(766222..766842) Helicobacter pylori HPAG1 4098816 YP_627470.1 CDS HPAG1_0729 NC_008086.1 766980 767435 R hypothetical protein complement(766980..767435) Helicobacter pylori HPAG1 4098817 YP_627471.1 CDS HPAG1_0730 NC_008086.1 767571 768554 D hypothetical protein 767571..768554 Helicobacter pylori HPAG1 4098818 YP_627472.1 CDS HPAG1_0731 NC_008086.1 768505 769764 D hypothetical protein 768505..769764 Helicobacter pylori HPAG1 4098819 YP_627473.1 CDS trmB NC_008086.1 769775 770956 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 769775..770956 Helicobacter pylori HPAG1 4098820 YP_627474.1 CDS HPAG1_0733 NC_008086.1 770953 771624 D cell division protein 770953..771624 Helicobacter pylori HPAG1 4098821 YP_627475.1 CDS HPAG1_0734 NC_008086.1 771611 772417 D cell division membrane protein 771611..772417 Helicobacter pylori HPAG1 4098822 YP_627476.1 CDS HPAG1_0735 NC_008086.1 772410 773612 D hypothetical protein 772410..773612 Helicobacter pylori HPAG1 4098823 YP_627477.1 CDS HPAG1_0736 NC_008086.1 773705 774064 D possibly involved in flagella export; flagellar protein FlaG 773705..774064 Helicobacter pylori HPAG1 4098824 YP_627478.1 CDS fliD NC_008086.1 774081 776138 D involved in flagellin assembly; flagellar capping protein 774081..776138 Helicobacter pylori HPAG1 4098825 YP_627479.1 CDS fliS NC_008086.1 776178 776558 D flagellin specific chaperone; flagellar protein FliS 776178..776558 Helicobacter pylori HPAG1 4098826 YP_627480.1 CDS HPAG1_0739 NC_008086.1 776545 776784 D hypothetical protein 776545..776784 Helicobacter pylori HPAG1 4098827 YP_627481.1 CDS HPAG1_0740 NC_008086.1 776837 777496 D molybdopterin biosynthesis protein 776837..777496 Helicobacter pylori HPAG1 4098828 YP_627482.1 CDS HPAG1_0741 NC_008086.1 777468 777671 D hypothetical protein 777468..777671 Helicobacter pylori HPAG1 4099098 YP_627483.1 CDS HPAG1_0742 NC_008086.1 777675 778553 D carbon-nitrogen hydrolase 777675..778553 Helicobacter pylori HPAG1 4099099 YP_627484.1 CDS HPAG1_0743 NC_008086.1 778680 779993 D hypothetical protein 778680..779993 Helicobacter pylori HPAG1 4099100 YP_627485.1 CDS HPAG1_0744 NC_008086.1 780056 781309 D hypothetical protein 780056..781309 Helicobacter pylori HPAG1 4099101 YP_627486.1 CDS HPAG1_0745 NC_008086.1 781310 782899 R protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase complement(781310..782899) Helicobacter pylori HPAG1 4099102 YP_627487.1 CDS HPAG1_0746 NC_008086.1 782799 783446 R hypothetical protein complement(782799..783446) Helicobacter pylori HPAG1 4099103 YP_627488.1 CDS HPAG1_0747 NC_008086.1 783571 784128 D hypothetical protein 783571..784128 Helicobacter pylori HPAG1 4099104 YP_627489.1 CDS HPAG1_0748 NC_008086.1 784134 785015 D signal recognition particle receptor 784134..785015 Helicobacter pylori HPAG1 4099105 YP_627490.1 CDS HPAG1_0749 NC_008086.1 785024 785338 R hypothetical protein complement(785024..785338) Helicobacter pylori HPAG1 4099106 YP_627491.1 CDS HPAG1_0750 NC_008086.1 785397 786377 R hypothetical protein complement(785397..786377) Helicobacter pylori HPAG1 4099107 YP_627492.1 CDS HPAG1_0751 NC_008086.1 786417 786632 R hypothetical protein complement(786417..786632) Helicobacter pylori HPAG1 4099108 YP_627493.1 CDS HPAG1_0752 NC_008086.1 786690 788240 R hypothetical protein complement(786690..788240) Helicobacter pylori HPAG1 4099109 YP_627494.1 CDS moaA NC_008086.1 788461 789426 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(788461..789426) Helicobacter pylori HPAG1 4099110 YP_627495.1 CDS HPAG1_0754 NC_008086.1 789513 790118 D MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein A 789513..790118 Helicobacter pylori HPAG1 4099111 YP_627496.1 CDS flhB NC_008086.1 790111 791187 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 790111..791187 Helicobacter pylori HPAG1 4099112 YP_627497.1 CDS HPAG1_0756 NC_008086.1 791274 792011 R hypothetical protein complement(791274..792011) Helicobacter pylori HPAG1 4099113 YP_627498.1 CDS HPAG1_0757 NC_008086.1 792030 793328 R N-acetylmuramoyl-L-alanine amidase complement(792030..793328) Helicobacter pylori HPAG1 4099114 YP_627499.1 CDS HPAG1_0758 NC_008086.1 793335 794426 R hypothetical protein complement(793335..794426) Helicobacter pylori HPAG1 4099115 YP_627500.1 CDS HPAG1_0759 NC_008086.1 794443 795651 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(794443..795651) Helicobacter pylori HPAG1 4099116 YP_627501.1 CDS HPAG1_0760 NC_008086.1 795675 798002 R penta-phosphate guanosine-3'-pyrophosphohydrolase complement(795675..798002) Helicobacter pylori HPAG1 4098888 YP_627502.1 CDS HPAG1_0761 NC_008086.1 797989 798213 R Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(797989..798213) Helicobacter pylori HPAG1 4098889 YP_627503.1 CDS pyrH NC_008086.1 798256 798978 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(798256..798978) Helicobacter pylori HPAG1 4098890 YP_627504.1 CDS HPAG1_0763 NC_008086.1 799087 799770 R hypothetical protein complement(799087..799770) Helicobacter pylori HPAG1 4098891 YP_627505.1 CDS HPAG1_0764 NC_008086.1 799898 802459 D catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 799898..802459 Helicobacter pylori HPAG1 4098892 YP_627506.1 CDS HPAG1_0765 NC_008086.1 802537 802806 D hypothetical protein 802537..802806 Helicobacter pylori HPAG1 4098893 YP_627507.1 CDS HPAG1_0766 NC_008086.1 802875 803060 D hypothetical protein 802875..803060 Helicobacter pylori HPAG1 4098894 YP_627508.1 CDS HPAG1_0767 NC_008086.1 803088 804377 D hypothetical protein 803088..804377 Helicobacter pylori HPAG1 4098895 YP_627509.1 CDS HPAG1_0768 NC_008086.1 804470 805837 D outer membrane protein HofE 804470..805837 Helicobacter pylori HPAG1 4098896 YP_627510.1 CDS HPAG1_0769 NC_008086.1 805844 806371 R hypothetical protein complement(805844..806371) Helicobacter pylori HPAG1 4098897 YP_627511.1 CDS HPAG1_0770 NC_008086.1 806710 806841 D hypothetical protein 806710..806841 Helicobacter pylori HPAG1 4098898 YP_627512.1 CDS lolA NC_008086.1 806856 807410 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(806856..807410) Helicobacter pylori HPAG1 4098899 YP_627513.1 CDS secA NC_008086.1 807558 810155 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 807558..810155 Helicobacter pylori HPAG1 4098900 YP_627514.1 CDS HPAG1_0773 NC_008086.1 810145 811377 D hypothetical protein 810145..811377 Helicobacter pylori HPAG1 4098901 YP_627515.1 CDS HPAG1_0774 NC_008086.1 811657 813156 D outer membrane protein HofF 811657..813156 Helicobacter pylori HPAG1 4098902 YP_627516.1 CDS HPAG1_0775 NC_008086.1 813528 814862 R putative type I restriction-modification enzyme specificity subunit S complement(813528..814862) Helicobacter pylori HPAG1 4098903 YP_627517.1 CDS HPAG1_0776 NC_008086.1 814903 816963 R cadmium-transporting ATPase complement(814903..816963) Helicobacter pylori HPAG1 4098904 YP_627518.1 CDS HPAG1_0777 NC_008086.1 816988 818508 R DNA transformation competence protein complement(816988..818508) Helicobacter pylori HPAG1 4098905 YP_627519.1 CDS def NC_008086.1 818514 819038 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(818514..819038) Helicobacter pylori HPAG1 4098906 YP_627520.1 CDS clpP NC_008086.1 819043 819633 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(819043..819633) Helicobacter pylori HPAG1 4098907 YP_627521.1 CDS tig NC_008086.1 819651 821006 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(819651..821006) Helicobacter pylori HPAG1 4099060 YP_627522.1 CDS HPAG1_0781 NC_008086.1 821118 821912 R outer membrane protein HorG complement(821118..821912) Helicobacter pylori HPAG1 4099061 YP_627523.1 CDS HPAG1_0782 NC_008086.1 821979 822761 R flagellar sheath adhesin complement(821979..822761) Helicobacter pylori HPAG1 4099062 YP_627524.1 CDS moaC NC_008086.1 822874 823350 R MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC complement(822874..823350) Helicobacter pylori HPAG1 4099063 YP_627525.1 CDS mogA NC_008086.1 823359 823889 R forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA complement(823359..823889) Helicobacter pylori HPAG1 4099064 YP_627526.1 CDS HPAG1_0785 NC_008086.1 823902 824339 R molybdopterin converting factor, subunit 2 complement(823902..824339) Helicobacter pylori HPAG1 4099065 YP_627527.1 CDS HPAG1_0786 NC_008086.1 824340 824558 R molybdopterin converting factor, subunit 1 complement(824340..824558) Helicobacter pylori HPAG1 4099066 YP_627528.1 CDS ribA NC_008086.1 824637 825215 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(824637..825215) Helicobacter pylori HPAG1 4099067 YP_627529.1 CDS HPAG1_0788 NC_008086.1 825304 826143 R hypothetical protein complement(825304..826143) Helicobacter pylori HPAG1 4099068 YP_627530.1 CDS HPAG1_0789 NC_008086.1 826230 827264 R bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein complement(826230..827264) Helicobacter pylori HPAG1 4099069 YP_627531.1 CDS HPAG1_0790 NC_008086.1 827458 828342 R lipooligosaccharide 5G8 epitope biosynthesis-associated protein complement(827458..828342) Helicobacter pylori HPAG1 4099070 YP_627532.1 CDS HPAG1_0791 NC_008086.1 828391 829011 D hypothetical protein 828391..829011 Helicobacter pylori HPAG1 4099071 YP_627533.1 CDS HPAG1_0792 NC_008086.1 829014 831392 R iron(III) dicitrate transport protein complement(829014..831392) Helicobacter pylori HPAG1 4099072 YP_627534.1 CDS acpS NC_008086.1 831590 831949 R Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase complement(831590..831949) Helicobacter pylori HPAG1 4099073 YP_627535.1 CDS fliL NC_008086.1 831956 832507 R interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL complement(831956..832507) Helicobacter pylori HPAG1 4099074 YP_627536.1 CDS HPAG1_0795 NC_008086.1 832516 833118 R hypothetical protein complement(832516..833118) Helicobacter pylori HPAG1 4099075 YP_627537.1 CDS HPAG1_0796 NC_008086.1 833097 833423 R hypothetical protein complement(833097..833423) Helicobacter pylori HPAG1 4099076 YP_627538.1 CDS HPAG1_0797 NC_008086.1 833888 834898 R hypothetical protein complement(833888..834898) Helicobacter pylori HPAG1 4099077 YP_627539.1 CDS HPAG1_0798 NC_008086.1 835032 835649 D hypothetical protein 835032..835649 Helicobacter pylori HPAG1 4099078 YP_627540.1 CDS HPAG1_0799 NC_008086.1 835650 836417 D thiamine biosynthesis protein 835650..836417 Helicobacter pylori HPAG1 4098633 YP_627541.1 CDS HPAG1_0800 NC_008086.1 836433 837206 D With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA 836433..837206 Helicobacter pylori HPAG1 4098634 YP_627542.1 CDS motB NC_008086.1 837209 837982 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 837209..837982 Helicobacter pylori HPAG1 4098635 YP_627543.1 CDS HPAG1_0802 NC_008086.1 837979 838425 D hypothetical protein 837979..838425 Helicobacter pylori HPAG1 4098636 YP_627544.1 CDS HPAG1_0803 NC_008086.1 838485 838616 D osmoprotection protein 838485..838616 Helicobacter pylori HPAG1 4098637 YP_627545.1 CDS HPAG1_0804 NC_008086.1 838618 840156 D osmoprotection protein 838618..840156 Helicobacter pylori HPAG1 4098638 YP_627546.1 CDS HPAG1_0805 NC_008086.1 840158 840799 D osmoprotection protein 840158..840799 Helicobacter pylori HPAG1 4098639 YP_627547.1 CDS HPAG1_0806 NC_008086.1 840982 841443 D hypothetical protein 840982..841443 Helicobacter pylori HPAG1 4098640 YP_627548.1 CDS uvrC NC_008086.1 841444 843228 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 841444..843228 Helicobacter pylori HPAG1 4098641 YP_627549.1 CDS HPAG1_0808 NC_008086.1 843239 844504 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 843239..844504 Helicobacter pylori HPAG1 4098642 YP_627550.1 CDS HPAG1_0809 NC_008086.1 844504 844848 D hypothetical protein 844504..844848 Helicobacter pylori HPAG1 4098643 YP_627551.1 CDS HPAG1_0810 NC_008086.1 844937 845257 D thioredoxin 844937..845257 Helicobacter pylori HPAG1 4098644 YP_627552.1 CDS HPAG1_0811 NC_008086.1 845262 846197 D thioredoxin reductase 845262..846197 Helicobacter pylori HPAG1 4098645 YP_627553.1 CDS HPAG1_0812 NC_008086.1 846407 847228 D beta-1,4-galactosyltransferase 846407..847228 Helicobacter pylori HPAG1 4098646 YP_627554.1 CDS HPAG1_0813 NC_008086.1 847431 847679 R RNA binding protein complement(847431..847679) Helicobacter pylori HPAG1 4098647 YP_627555.1 CDS HPAG1_0814 NC_008086.1 848002 848682 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(848002..848682) Helicobacter pylori HPAG1 4098648 YP_627556.1 CDS HPAG1_0815 NC_008086.1 848804 850249 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(848804..850249) Helicobacter pylori HPAG1 4098649 YP_627557.1 CDS gatA NC_008086.1 850259 851620 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(850259..851620) Helicobacter pylori HPAG1 4098650 YP_627558.1 CDS coaE NC_008086.1 851680 852270 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(851680..852270) Helicobacter pylori HPAG1 4098651 YP_627559.1 CDS speE NC_008086.1 852272 853060 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(852272..853060) Helicobacter pylori HPAG1 4098652 YP_627560.1 CDS HPAG1_0819 NC_008086.1 853152 854036 R hypothetical protein complement(853152..854036) Helicobacter pylori HPAG1 4098184 YP_627561.1 CDS engA NC_008086.1 854113 855498 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 854113..855498 Helicobacter pylori HPAG1 4098185 YP_627562.1 CDS HPAG1_0821 NC_008086.1 855640 855924 D DNA-binding protein HU 855640..855924 Helicobacter pylori HPAG1 4098186 YP_627563.1 CDS HPAG1_0822 NC_008086.1 856513 857124 D hypothetical protein 856513..857124 Helicobacter pylori HPAG1 4098188 YP_627564.1 CDS HPAG1_0823 NC_008086.1 857144 857761 D hypothetical protein 857144..857761 Helicobacter pylori HPAG1 4098189 YP_627565.1 CDS HPAG1_0824 NC_008086.1 857758 859521 D outer membrane protein P1 857758..859521 Helicobacter pylori HPAG1 4098190 YP_627566.1 CDS HPAG1_0825 NC_008086.1 859527 860510 D UDP-GlcNAc C6 dehydratase 859527..860510 Helicobacter pylori HPAG1 4098191 YP_627567.1 CDS HPAG1_0826 NC_008086.1 860507 861784 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 860507..861784 Helicobacter pylori HPAG1 4098192 YP_627568.1 CDS HPAG1_0827 NC_008086.1 861784 862521 D hypothetical protein 861784..862521 Helicobacter pylori HPAG1 4098193 YP_627569.1 CDS thiE NC_008086.1 862576 863235 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(862576..863235) Helicobacter pylori HPAG1 4098194 YP_627570.1 CDS HPAG1_0829 NC_008086.1 863228 864037 R thiamine biosynthesis protein complement(863228..864037) Helicobacter pylori HPAG1 4098195 YP_627571.1 CDS HPAG1_0830 NC_008086.1 864034 864816 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(864034..864816) Helicobacter pylori HPAG1 4098196 YP_627572.1 CDS HPAG1_0831 NC_008086.1 864901 867912 R type I restriction enzyme R protein complement(864901..867912) Helicobacter pylori HPAG1 4098197 YP_627573.1 CDS HPAG1_0832 NC_008086.1 868049 869287 R HP0790-like protein complement(868049..869287) Helicobacter pylori HPAG1 4098198 YP_627574.1 CDS HPAG1_0833 NC_008086.1 869298 870821 R type I restriction enzyme M protein complement(869298..870821) Helicobacter pylori HPAG1 4098199 YP_627575.1 CDS HPAG1_0834 NC_008086.1 871053 871739 D hypothetical protein 871053..871739 Helicobacter pylori HPAG1 4098200 YP_627576.1 CDS HPAG1_0835 NC_008086.1 871762 872160 R hypothetical protein complement(871762..872160) Helicobacter pylori HPAG1 4098201 YP_627577.1 CDS HPAG1_0836 NC_008086.1 872157 872696 R hypothetical protein complement(872157..872696) Helicobacter pylori HPAG1 4097864 YP_627578.1 CDS HPAG1_0837 NC_008086.1 872693 874294 R ABC transporter, ATP-binding protein complement(872693..874294) Helicobacter pylori HPAG1 4097865 YP_627579.1 CDS HPAG1_0838 NC_008086.1 874492 875469 D guanosine 5'-monophosphate oxidoreductase 874492..875469 Helicobacter pylori HPAG1 4097866 YP_627580.1 CDS HPAG1_0839 NC_008086.1 875466 875663 R hypothetical protein complement(875466..875663) Helicobacter pylori HPAG1 4097867 YP_627581.1 CDS HPAG1_0840 NC_008086.1 875635 876213 R catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase complement(875635..876213) Helicobacter pylori HPAG1 4097868 YP_627582.1 CDS HPAG1_0841 NC_008086.1 876206 877597 R ADP-heptose synthase complement(876206..877597) Helicobacter pylori HPAG1 4097869 YP_627583.1 CDS HPAG1_0842 NC_008086.1 877594 878586 R ADP-L-glycero-D-mannoheptose-6-epimerase complement(877594..878586) Helicobacter pylori HPAG1 4097870 YP_627584.1 CDS HPAG1_0843 NC_008086.1 878595 879116 R hypothetical protein complement(878595..879116) Helicobacter pylori HPAG1 4097871 YP_627585.1 CDS HPAG1_0844 NC_008086.1 879106 879846 R hypothetical protein complement(879106..879846) Helicobacter pylori HPAG1 4097872 YP_627586.1 CDS HPAG1_0845 NC_008086.1 879837 880508 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(879837..880508) Helicobacter pylori HPAG1 4097873 YP_627587.1 CDS HPAG1_0846 NC_008086.1 880513 882189 R hypothetical protein complement(880513..882189) Helicobacter pylori HPAG1 4097874 YP_627588.1 CDS HPAG1_0847 NC_008086.1 882191 882847 R hypothetical protein complement(882191..882847) Helicobacter pylori HPAG1 4097875 YP_627589.1 CDS dut NC_008086.1 882844 883281 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(882844..883281) Helicobacter pylori HPAG1 4097876 YP_627590.1 CDS greA NC_008086.1 883271 883765 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(883271..883765) Helicobacter pylori HPAG1 4097877 YP_627591.1 CDS lpxB NC_008086.1 883806 884888 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; ipid-A-disaccharide synthase complement(883806..884888) Helicobacter pylori HPAG1 4097878 YP_627592.1 CDS HPAG1_0851 NC_008086.1 884888 885349 R hypothetical protein complement(884888..885349) Helicobacter pylori HPAG1 4097879 YP_627593.1 CDS hypA NC_008086.1 885353 885706 R plays a role in hydrogenase nickel cofactor insertion; hydrogenase nickel incorporation protein complement(885353..885706) Helicobacter pylori HPAG1 4097880 YP_627594.1 CDS flgE NC_008086.1 885765 887921 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(885765..887921) Helicobacter pylori HPAG1 4097881 YP_627595.1 CDS HPAG1_0854 NC_008086.1 888140 888874 R CDP-diacylglycerol pyrophosphatase complement(888140..888874) Helicobacter pylori HPAG1 4097882 YP_627596.1 CDS HPAG1_0855 NC_008086.1 889234 889563 D alkylphosphonate uptake protein 889234..889563 Helicobacter pylori HPAG1 4097883 YP_627597.1 CDS HPAG1_0856 NC_008086.1 889615 889830 R hypothetical protein complement(889615..889830) Helicobacter pylori HPAG1 4097884 YP_627598.1 CDS HPAG1_0857 NC_008086.1 889912 890787 R hypothetical protein complement(889912..890787) Helicobacter pylori HPAG1 4097885 YP_627599.1 CDS HPAG1_0858 NC_008086.1 890932 892449 R catalase complement(890932..892449) Helicobacter pylori HPAG1 4097886 YP_627600.1 CDS HPAG1_0859 NC_008086.1 892772 895147 D iron-regulated outer membrane protein 892772..895147 Helicobacter pylori HPAG1 4097887 YP_627601.1 CDS ruvC NC_008086.1 895148 895621 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(895148..895621) Helicobacter pylori HPAG1 4097888 YP_627602.1 CDS HPAG1_0861 NC_008086.1 895752 896483 D hypothetical protein 895752..896483 Helicobacter pylori HPAG1 4097889 YP_627603.1 CDS HPAG1_0862 NC_008086.1 897594 898460 R hypothetical protein complement(897594..898460) Helicobacter pylori HPAG1 4097890 YP_627604.1 CDS ruvA NC_008086.1 898513 899064 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(898513..899064) Helicobacter pylori HPAG1 4097891 YP_627605.1 CDS HPAG1_0864 NC_008086.1 899090 900934 R hypothetical protein complement(899090..900934) Helicobacter pylori HPAG1 4097892 YP_627606.1 CDS HPAG1_0865 NC_008086.1 901105 902487 D virulence factor mviN protein 901105..902487 Helicobacter pylori HPAG1 4097893 YP_627607.1 CDS cysS NC_008086.1 902488 903885 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 902488..903885 Helicobacter pylori HPAG1 4097894 YP_627608.1 CDS HPAG1_0867 NC_008086.1 904115 908005 D vacuolating cytotoxin 904115..908005 Helicobacter pylori HPAG1 4097895 YP_627609.1 CDS HPAG1_0868 NC_008086.1 908125 909150 R lipopolysaccharide 1,2-glycosyltransferase complement(908125..909150) Helicobacter pylori HPAG1 4097896 YP_627610.1 CDS HPAG1_0869 NC_008086.1 909309 910076 R iron(III) dicitrate ABC transporter, ATP-binding protein complement(909309..910076) Helicobacter pylori HPAG1 4097897 YP_627611.1 CDS HPAG1_0870 NC_008086.1 910076 911056 R iron(III) dicitrate ABC transporter, permease protein complement(910076..911056) Helicobacter pylori HPAG1 4097898 YP_627612.1 CDS HPAG1_0871 NC_008086.1 911049 911903 R hypothetical protein complement(911049..911903) Helicobacter pylori HPAG1 4097899 YP_627613.1 CDS HPAG1_0872 NC_008086.1 912043 912567 D hypothetical protein 912043..912567 Helicobacter pylori HPAG1 4097900 YP_627614.1 CDS HPAG1_0873 NC_008086.1 912673 912939 R hypothetical protein complement(912673..912939) Helicobacter pylori HPAG1 4097901 YP_627615.1 CDS HPAG1_0874 NC_008086.1 912920 913297 R hypothetical protein complement(912920..913297) Helicobacter pylori HPAG1 4097902 YP_627616.1 CDS HPAG1_0875 NC_008086.1 913376 913582 D hypothetical protein 913376..913582 Helicobacter pylori HPAG1 4099386 YP_627617.1 CDS HPAG1_0876 NC_008086.1 913627 915861 R outer membrane protein BabA complement(913627..915861) Helicobacter pylori HPAG1 4099387 YP_627618.1 CDS HPAG1_0877 NC_008086.1 916338 917003 D hypothetical protein 916338..917003 Helicobacter pylori HPAG1 4099389 YP_627619.1 CDS HPAG1_0878 NC_008086.1 916954 918066 R hydrogenase expression/formation protein HypD complement(916954..918066) Helicobacter pylori HPAG1 4099391 YP_627620.1 CDS HPAG1_0879 NC_008086.1 918084 918320 R hydrogenase expression/formation protein HypC complement(918084..918320) Helicobacter pylori HPAG1 4099392 YP_627621.1 CDS HPAG1_0880 NC_008086.1 918320 919048 R hydrogenase expression/formation protein HypB complement(918320..919048) Helicobacter pylori HPAG1 4099393 YP_627622.1 CDS HPAG1_0881 NC_008086.1 919128 919316 D hypothetical protein 919128..919316 Helicobacter pylori HPAG1 4099394 YP_627623.1 CDS HPAG1_0882 NC_008086.1 919291 919590 R hypothetical protein complement(919291..919590) Helicobacter pylori HPAG1 4099395 YP_627624.1 CDS HPAG1_0883 NC_008086.1 919787 920053 R acetate kinase complement(919787..920053) Helicobacter pylori HPAG1 4099396 YP_627625.1 CDS HPAG1_0884 NC_008086.1 920149 920670 R acetate kinase complement(920149..920670) Helicobacter pylori HPAG1 4099397 YP_627626.1 CDS HPAG1_0885 NC_008086.1 920685 921224 R phosphotransacetylase complement(920685..921224) Helicobacter pylori HPAG1 4099398 YP_627627.1 CDS HPAG1_0886 NC_008086.1 921268 922122 R phosphotransacetylase complement(921268..922122) Helicobacter pylori HPAG1 4099399 YP_627628.1 CDS HPAG1_0887 NC_008086.1 922109 922234 R phosphotransacetylase complement(922109..922234) Helicobacter pylori HPAG1 4099400 YP_627629.1 CDS HPAG1_0888 NC_008086.1 922483 924057 D hypothetical protein 922483..924057 Helicobacter pylori HPAG1 4099401 YP_627630.1 CDS flgD NC_008086.1 924108 925091 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 924108..925091 Helicobacter pylori HPAG1 4099402 YP_627631.1 CDS flgE NC_008086.1 925088 926905 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 925088..926905 Helicobacter pylori HPAG1 4099403 YP_627632.1 CDS HPAG1_0891 NC_008086.1 926957 927544 D hypothetical protein 926957..927544 Helicobacter pylori HPAG1 4099423 YP_627633.1 CDS HPAG1_0892 NC_008086.1 927554 928705 D adenine specific DNA methyltransferase 927554..928705 Helicobacter pylori HPAG1 4099424 YP_627634.1 CDS HPAG1_0893 NC_008086.1 928709 930736 D rep helicase, single-stranded DNA-dependent ATPase 928709..930736 Helicobacter pylori HPAG1 4099425 YP_627635.1 CDS HPAG1_0894 NC_008086.1 931282 931470 R hypothetical protein complement(931282..931470) Helicobacter pylori HPAG1 4099426 YP_627636.1 CDS HPAG1_0895 NC_008086.1 931575 933128 D outer membrane protein HopC 931575..933128 Helicobacter pylori HPAG1 4099427 YP_627637.1 CDS HPAG1_0896 NC_008086.1 933150 934739 D outer membrane protein HopB 933150..934739 Helicobacter pylori HPAG1 4099428 YP_627638.1 CDS HPAG1_0897 NC_008086.1 935447 936991 R outer membrane protein HopG complement(935447..936991) Helicobacter pylori HPAG1 4099429 YP_627639.1 CDS HPAG1_0898 NC_008086.1 937238 939679 R iron-regulated outer membrane protein complement(937238..939679) Helicobacter pylori HPAG1 4099430 YP_627640.1 CDS HPAG1_0899 NC_008086.1 939938 940369 R hypothetical protein complement(939938..940369) Helicobacter pylori HPAG1 4099431 YP_627641.1 CDS carB NC_008086.1 940374 943631 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(940374..943631) Helicobacter pylori HPAG1 4099432 YP_627642.1 CDS HPAG1_0901 NC_008086.1 943729 944421 R hypothetical protein complement(943729..944421) Helicobacter pylori HPAG1 4099433 YP_627643.1 CDS HPAG1_0902 NC_008086.1 944565 945560 D glyceraldehyde-3-phosphate dehydrogenase 944565..945560 Helicobacter pylori HPAG1 4099434 YP_627644.1 CDS HPAG1_0903 NC_008086.1 945641 952894 D vacuolating cytotoxin (VacA)-like protein 945641..952894 Helicobacter pylori HPAG1 4099435 YP_627645.1 CDS HPAG1_0904 NC_008086.1 952945 954051 D outer membrane protein HopK 952945..954051 Helicobacter pylori HPAG1 4099436 YP_627646.1 CDS HPAG1_0905 NC_008086.1 954119 954325 R 4-oxalocrotonate tautomerase complement(954119..954325) Helicobacter pylori HPAG1 4099437 YP_627647.1 CDS recR NC_008086.1 954472 955053 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 954472..955053 Helicobacter pylori HPAG1 4099438 YP_627648.1 CDS truD NC_008086.1 955050 956195 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 955050..956195 Helicobacter pylori HPAG1 4099439 YP_627649.1 CDS HPAG1_0908 NC_008086.1 956134 957114 D putative metalloprotease; heat shock protein HtpX 956134..957114 Helicobacter pylori HPAG1 4099440 YP_627650.1 CDS folE NC_008086.1 957115 957657 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 957115..957657 Helicobacter pylori HPAG1 4099441 YP_627651.1 CDS HPAG1_0910 NC_008086.1 957673 958584 D geranyltranstransferase 957673..958584 Helicobacter pylori HPAG1 4098537 YP_627652.1 CDS surE NC_008086.1 958581 959384 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 958581..959384 Helicobacter pylori HPAG1 4098538 YP_627653.1 CDS HPAG1_0912 NC_008086.1 959381 960040 D hypothetical protein 959381..960040 Helicobacter pylori HPAG1 4098539 YP_627654.1 CDS HPAG1_0913 NC_008086.1 960041 960646 D hypothetical protein 960041..960646 Helicobacter pylori HPAG1 4098540 YP_627655.1 CDS HPAG1_0914 NC_008086.1 960643 961398 D hypothetical protein 960643..961398 Helicobacter pylori HPAG1 4098541 YP_627656.1 CDS HPAG1_0915 NC_008086.1 961409 961894 D hypothetical protein 961409..961894 Helicobacter pylori HPAG1 4098542 YP_627657.1 CDS HPAG1_0916 NC_008086.1 961898 962230 D putative outer membrane protein 961898..962230 Helicobacter pylori HPAG1 4098543 YP_627658.1 CDS HPAG1_0917 NC_008086.1 962417 963586 R proline and betaine transporter complement(962417..963586) Helicobacter pylori HPAG1 4098544 YP_627659.1 CDS HPAG1_0918 NC_008086.1 964057 964860 R hypothetical protein complement(964057..964860) Helicobacter pylori HPAG1 4098545 YP_627660.1 CDS HPAG1_0919 NC_008086.1 964836 964979 R hypothetical protein complement(964836..964979) Helicobacter pylori HPAG1 4098546 YP_627661.1 CDS HPAG1_0920 NC_008086.1 965033 965377 R hypothetical protein complement(965033..965377) Helicobacter pylori HPAG1 4098547 YP_627662.1 CDS HPAG1_0921 NC_008086.1 965355 965744 R hypothetical protein complement(965355..965744) Helicobacter pylori HPAG1 4098548 YP_627663.1 CDS HPAG1_0922 NC_008086.1 965813 966526 R amino acid ABC transporter, permease protein complement(965813..966526) Helicobacter pylori HPAG1 4098549 YP_627664.1 CDS HPAG1_0923 NC_008086.1 966510 967280 R amino acid ABC transporter, periplasmic binding protein complement(966510..967280) Helicobacter pylori HPAG1 4098550 YP_627665.1 CDS HPAG1_0924 NC_008086.1 967351 968484 R alanine racemase, biosynthetic complement(967351..968484) Helicobacter pylori HPAG1 4098551 YP_627666.1 CDS HPAG1_0925 NC_008086.1 968491 969843 R D-alanine glycine permease complement(968491..969843) Helicobacter pylori HPAG1 4098552 YP_627667.1 CDS HPAG1_0926 NC_008086.1 969884 971116 R D-amino acid dehydrogenase complement(969884..971116) Helicobacter pylori HPAG1 4098553 YP_627668.1 CDS HPAG1_0927 NC_008086.1 971138 971515 R hypothetical protein complement(971138..971515) Helicobacter pylori HPAG1 4098554 YP_627669.1 CDS HPAG1_0928 NC_008086.1 971693 971905 R hypothetical protein complement(971693..971905) Helicobacter pylori HPAG1 4097943 YP_627670.1 CDS HPAG1_0929 NC_008086.1 971936 972235 D protein tRNA-associated locus protein 971936..972235 Helicobacter pylori HPAG1 4097944 YP_627671.1 CDS HPAG1_0930 NC_008086.1 972795 974285 D hypothetical protein 972795..974285 Helicobacter pylori HPAG1 4097948 YP_627672.1 CDS HPAG1_0931 NC_008086.1 974602 974964 D hypothetical protein 974602..974964 Helicobacter pylori HPAG1 4097949 YP_627673.1 CDS HPAG1_0932 NC_008086.1 975377 976390 R hypothetical protein complement(975377..976390) Helicobacter pylori HPAG1 4097950 YP_627674.1 CDS HPAG1_0933 NC_008086.1 976400 976852 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(976400..976852) Helicobacter pylori HPAG1 4097951 YP_627675.1 CDS HPAG1_0934 NC_008086.1 976866 977735 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(976866..977735) Helicobacter pylori HPAG1 4097952 YP_627676.1 CDS HPAG1_0935 NC_008086.1 977816 978430 D putative recombination protein RecO 977816..978430 Helicobacter pylori HPAG1 4097953 YP_627677.1 CDS HPAG1_0936 NC_008086.1 978441 979097 D hypothetical protein 978441..979097 Helicobacter pylori HPAG1 4097954 YP_627678.1 CDS HPAG1_0937 NC_008086.1 979100 979666 R hypothetical protein complement(979100..979666) Helicobacter pylori HPAG1 4097955 YP_627679.1 CDS HPAG1_0938 NC_008086.1 979731 980363 R oxygen-insensitive NADPH nitroreductase complement(979731..980363) Helicobacter pylori HPAG1 4097956 YP_627680.1 CDS HPAG1_0939 NC_008086.1 980374 981213 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(980374..981213) Helicobacter pylori HPAG1 4097957 YP_627681.1 CDS HPAG1_0940 NC_008086.1 981223 981951 R hypothetical protein complement(981223..981951) Helicobacter pylori HPAG1 4097958 YP_627682.1 CDS HPAG1_0941 NC_008086.1 981970 983151 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(981970..983151) Helicobacter pylori HPAG1 4099301 YP_627683.1 CDS HPAG1_0942 NC_008086.1 983152 983916 R hypothetical protein complement(983152..983916) Helicobacter pylori HPAG1 4099302 YP_627684.1 CDS HPAG1_0943 NC_008086.1 983926 984657 R hypothetical protein complement(983926..984657) Helicobacter pylori HPAG1 4099303 YP_627685.1 CDS glyQ NC_008086.1 984659 985555 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(984659..985555) Helicobacter pylori HPAG1 4099304 YP_627686.1 CDS gpsA NC_008086.1 985569 986507 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(985569..986507) Helicobacter pylori HPAG1 4099305 YP_627687.1 CDS HPAG1_0946 NC_008086.1 986648 988231 R hypothetical protein complement(986648..988231) Helicobacter pylori HPAG1 4099306 YP_627688.1 CDS HPAG1_0947 NC_008086.1 988228 990564 R hypothetical protein complement(988228..990564) Helicobacter pylori HPAG1 4099307 YP_627689.1 CDS HPAG1_0948 NC_008086.1 990561 992087 R hypothetical protein complement(990561..992087) Helicobacter pylori HPAG1 4099308 YP_627690.1 CDS HPAG1_0949 NC_008086.1 992653 992934 R hypothetical protein complement(992653..992934) Helicobacter pylori HPAG1 4099309 YP_627691.1 CDS HPAG1_0950 NC_008086.1 992950 996009 R cobalt-zinc-cadmium resistance protein complement(992950..996009) Helicobacter pylori HPAG1 4099310 YP_627692.1 CDS HPAG1_0951 NC_008086.1 996009 997088 R cobalt-zinc-cadmium resistance protein complement(996009..997088) Helicobacter pylori HPAG1 4099311 YP_627693.1 CDS HPAG1_0952 NC_008086.1 997085 998380 R hypothetical protein complement(997085..998380) Helicobacter pylori HPAG1 4099312 YP_627694.1 CDS glyS NC_008086.1 998370 1000475 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(998370..1000475) Helicobacter pylori HPAG1 4099313 YP_627695.1 CDS HPAG1_0954 NC_008086.1 1000587 1001672 D hypothetical protein 1000587..1001672 Helicobacter pylori HPAG1 4099314 YP_627696.1 CDS HPAG1_0955 NC_008086.1 1001685 1003160 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1001685..1003160 Helicobacter pylori HPAG1 4099315 YP_627697.1 CDS gatC NC_008086.1 1003175 1003456 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 1003175..1003456 Helicobacter pylori HPAG1 4099316 YP_627698.1 CDS HPAG1_0957 NC_008086.1 1003576 1004886 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase complement(1003576..1004886) Helicobacter pylori HPAG1 4099317 YP_627699.1 CDS HPAG1_0958 NC_008086.1 1005016 1006479 D peptidyl-prolyl cis-trans isomerase D 1005016..1006479 Helicobacter pylori HPAG1 4099318 YP_627700.1 CDS HPAG1_0959 NC_008086.1 1006495 1007973 D cell division protein 1006495..1007973 Helicobacter pylori HPAG1 4099319 YP_627701.1 CDS HPAG1_0960 NC_008086.1 1008104 1009261 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1008104..1009261 Helicobacter pylori HPAG1 4099320 YP_627702.1 CDS HPAG1_0961 NC_008086.1 1009714 1009818 R hypothetical protein complement(1009714..1009818) Helicobacter pylori HPAG1 4098408 YP_627703.1 CDS HPAG1_0962 NC_008086.1 1009929 1010117 R hypothetical protein complement(1009929..1010117) Helicobacter pylori HPAG1 4098409 YP_627704.1 CDS HPAG1_0963 NC_008086.1 1010280 1011104 R hypothetical protein complement(1010280..1011104) Helicobacter pylori HPAG1 4098410 YP_627705.1 CDS HPAG1_0964 NC_008086.1 1011239 1011430 R hypothetical protein complement(1011239..1011430) Helicobacter pylori HPAG1 4098411 YP_627706.1 CDS HPAG1_0965 NC_008086.1 1012207 1012578 R hypothetical protein complement(1012207..1012578) Helicobacter pylori HPAG1 4098412 YP_627707.1 CDS HPAG1_0966 NC_008086.1 1012641 1012961 R hypothetical protein complement(1012641..1012961) Helicobacter pylori HPAG1 4098413 YP_627708.1 CDS HPAG1_0967 NC_008086.1 1017340 1017606 D hypothetical protein 1017340..1017606 Helicobacter pylori HPAG1 4098416 YP_627709.1 CDS HPAG1_0968 NC_008086.1 1017993 1018433 D hypothetical protein 1017993..1018433 Helicobacter pylori HPAG1 4098417 YP_627710.1 CDS HPAG1_0969 NC_008086.1 1018474 1020303 D hypothetical protein 1018474..1020303 Helicobacter pylori HPAG1 4098418 YP_627711.1 CDS HPAG1_0970 NC_008086.1 1020454 1020699 D hypothetical protein 1020454..1020699 Helicobacter pylori HPAG1 4098419 YP_627712.1 CDS HPAG1_0971 NC_008086.1 1020701 1021363 D hypothetical protein 1020701..1021363 Helicobacter pylori HPAG1 4098420 YP_627713.1 CDS HPAG1_0972 NC_008086.1 1021469 1023316 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(1021469..1023316) Helicobacter pylori HPAG1 4098421 YP_627714.1 CDS HPAG1_0973 NC_008086.1 1023331 1024500 R type 1 capsular polysaccharide biosynthesis protein J complement(1023331..1024500) Helicobacter pylori HPAG1 4098422 YP_627715.1 CDS HPAG1_0974 NC_008086.1 1024505 1024933 R hypothetical protein complement(1024505..1024933) Helicobacter pylori HPAG1 4098423 YP_627716.1 CDS HPAG1_0975 NC_008086.1 1024950 1025735 R hypothetical protein complement(1024950..1025735) Helicobacter pylori HPAG1 4098424 YP_627717.1 CDS HPAG1_0976 NC_008086.1 1025739 1026758 R hypothetical protein complement(1025739..1026758) Helicobacter pylori HPAG1 4098075 YP_627718.1 CDS HPAG1_0977 NC_008086.1 1026759 1028690 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1026759..1028690) Helicobacter pylori HPAG1 4098076 YP_627719.1 CDS HPAG1_0978 NC_008086.1 1028860 1030029 D cyclopropane fatty acid synthase 1028860..1030029 Helicobacter pylori HPAG1 4098077 YP_627720.1 CDS HPAG1_0979 NC_008086.1 1030032 1031903 R hypothetical protein complement(1030032..1031903) Helicobacter pylori HPAG1 4098078 YP_627721.1 CDS HPAG1_0980 NC_008086.1 1032378 1032476 R hypothetical protein complement(1032378..1032476) Helicobacter pylori HPAG1 4098079 YP_627723.1 CDS HPAG1_0982 NC_008086.1 1033136 1033885 R putative neuraminyllactose-binding hemagglutinin-like protein complement(1033136..1033885) Helicobacter pylori HPAG1 4098085 YP_627724.1 CDS guaA NC_008086.1 1033970 1035496 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1033970..1035496) Helicobacter pylori HPAG1 4098086 YP_627725.1 CDS HPAG1_0984 NC_008086.1 1035507 1035995 R hypothetical protein complement(1035507..1035995) Helicobacter pylori HPAG1 4098087 YP_627726.1 CDS HPAG1_0985 NC_008086.1 1036156 1038546 R biotin sulfoxide reductase complement(1036156..1038546) Helicobacter pylori HPAG1 4098088 YP_627727.1 CDS HPAG1_0986 NC_008086.1 1038650 1039240 R hypothetical protein complement(1038650..1039240) Helicobacter pylori HPAG1 4098089 YP_627728.1 CDS HPAG1_0987 NC_008086.1 1039266 1040588 R nifS-like protein complement(1039266..1040588) Helicobacter pylori HPAG1 4099241 YP_627729.1 CDS HPAG1_0988 NC_008086.1 1040607 1040921 R ADP hydrolase complement(1040607..1040921) Helicobacter pylori HPAG1 4099242 YP_627730.1 CDS pheS NC_008086.1 1041003 1041989 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1041003..1041989 Helicobacter pylori HPAG1 4099243 YP_627731.1 CDS pheT NC_008086.1 1041989 1044283 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1041989..1044283 Helicobacter pylori HPAG1 4099244 YP_627732.1 CDS HPAG1_0991 NC_008086.1 1044287 1045576 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1044287..1045576 Helicobacter pylori HPAG1 4099245 YP_627733.1 CDS ispH NC_008086.1 1045566 1046390 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1045566..1046390 Helicobacter pylori HPAG1 4099246 YP_627734.1 CDS rpsA NC_008086.1 1046511 1048181 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1046511..1048181 Helicobacter pylori HPAG1 4099247 YP_627735.1 CDS HPAG1_0994 NC_008086.1 1048210 1048758 D hypothetical protein 1048210..1048758 Helicobacter pylori HPAG1 4099248 YP_627736.1 CDS HPAG1_0995 NC_008086.1 1048774 1050348 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1048774..1050348 Helicobacter pylori HPAG1 4099249 YP_627737.1 CDS HPAG1_0996 NC_008086.1 1050358 1052208 D hypothetical protein 1050358..1052208 Helicobacter pylori HPAG1 4099250 YP_627738.1 CDS HPAG1_0997 NC_008086.1 1052232 1052900 D hypothetical protein 1052232..1052900 Helicobacter pylori HPAG1 4099251 YP_627739.1 CDS HPAG1_0998 NC_008086.1 1052902 1053660 D hypothetical protein 1052902..1053660 Helicobacter pylori HPAG1 4099252 YP_627740.1 CDS HPAG1_0999 NC_008086.1 1053664 1054599 D CheA-MCP interaction modulator 1053664..1054599 Helicobacter pylori HPAG1 4099253 YP_627741.1 CDS HPAG1_1000 NC_008086.1 1054656 1057064 D autophosphorylating histidine kinase 1054656..1057064 Helicobacter pylori HPAG1 4099254 YP_627742.1 CDS HPAG1_1001 NC_008086.1 1057061 1057558 D CheA-MCP coupling protein 1057061..1057558 Helicobacter pylori HPAG1 4099255 YP_627743.1 CDS HPAG1_1002 NC_008086.1 1057818 1058318 R adhesin-thiol peroxidase complement(1057818..1058318) Helicobacter pylori HPAG1 4099256 YP_627744.1 CDS HPAG1_1003 NC_008086.1 1058541 1059182 D iron-dependent superoxide dismutase 1058541..1059182 Helicobacter pylori HPAG1 4099257 YP_627745.1 CDS HPAG1_1004 NC_008086.1 1059235 1059954 D hypothetical protein 1059235..1059954 Helicobacter pylori HPAG1 4099258 YP_627746.1 CDS HPAG1_1005 NC_008086.1 1059987 1061846 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(1059987..1061846) Helicobacter pylori HPAG1 4099259 YP_627747.1 CDS HPAG1_1006 NC_008086.1 1061831 1062067 R hypothetical protein complement(1061831..1062067) Helicobacter pylori HPAG1 4099260 YP_627748.1 CDS HPAG1_1007 NC_008086.1 1062080 1062307 R hypothetical protein complement(1062080..1062307) Helicobacter pylori HPAG1 4099003 YP_627749.1 CDS HPAG1_1008 NC_008086.1 1062489 1063235 D hypothetical protein 1062489..1063235 Helicobacter pylori HPAG1 4099004 YP_627750.1 CDS HPAG1_1009 NC_008086.1 1063243 1063773 R hypothetical protein complement(1063243..1063773) Helicobacter pylori HPAG1 4099005 YP_627751.1 CDS HPAG1_1010 NC_008086.1 1063947 1065170 D zinc-metalloprotease 1063947..1065170 Helicobacter pylori HPAG1 4099006 YP_627752.1 CDS HPAG1_1011 NC_008086.1 1065167 1065991 D S-adenosylmethionine-dependent methyltransferase 1065167..1065991 Helicobacter pylori HPAG1 4099007 YP_627753.1 CDS HPAG1_1012 NC_008086.1 1066063 1067409 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1066063..1067409 Helicobacter pylori HPAG1 4099008 YP_627754.1 CDS HPAG1_1013 NC_008086.1 1067423 1068799 R alpha 1,3-fucosyltransferase complement(1067423..1068799) Helicobacter pylori HPAG1 4099009 YP_627755.1 CDS HPAG1_1014 NC_008086.1 1068809 1071619 R cytochrome c-type biogenesis protein complement(1068809..1071619) Helicobacter pylori HPAG1 4099010 YP_627756.1 CDS HPAG1_1015 NC_008086.1 1071606 1072292 R thiol:disulfide interchange protein complement(1071606..1072292) Helicobacter pylori HPAG1 4099011 YP_627757.1 CDS hemH NC_008086.1 1072366 1073373 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(1072366..1073373) Helicobacter pylori HPAG1 4099012 YP_627758.1 CDS HPAG1_1017 NC_008086.1 1073429 1073860 D hypothetical protein 1073429..1073860 Helicobacter pylori HPAG1 4099013 YP_627759.1 CDS HPAG1_1018 NC_008086.1 1073861 1074541 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1073861..1074541 Helicobacter pylori HPAG1 4099014 YP_627760.1 CDS HPAG1_1019 NC_008086.1 1074565 1076667 R outer membrane protein complement(1074565..1076667) Helicobacter pylori HPAG1 4099015 YP_627761.1 CDS dcd NC_008086.1 1076827 1077399 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(1076827..1077399) Helicobacter pylori HPAG1 4099016 YP_627762.1 CDS HPAG1_1021 NC_008086.1 1077517 1077999 D biotin carboxyl carrier protein 1077517..1077999 Helicobacter pylori HPAG1 4099017 YP_627763.1 CDS HPAG1_1022 NC_008086.1 1078005 1079381 D biotin carboxylase; biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; biotin carboxylase 1078005..1079381 Helicobacter pylori HPAG1 4099018 YP_627764.1 CDS HPAG1_1023 NC_008086.1 1079474 1080295 D putative type II DNA modification enzyme 1079474..1080295 Helicobacter pylori HPAG1 4099019 YP_627765.1 CDS HPAG1_1024 NC_008086.1 1080265 1080435 D putative type II DNA modification enzyme 1080265..1080435 Helicobacter pylori HPAG1 4099020 YP_627766.1 CDS HPAG1_1025 NC_008086.1 1080435 1080743 D hypothetical protein 1080435..1080743 Helicobacter pylori HPAG1 4099021 YP_627767.1 CDS HPAG1_1026 NC_008086.1 1080748 1080984 D hypothetical protein 1080748..1080984 Helicobacter pylori HPAG1 4098318 YP_627768.1 CDS HPAG1_1027 NC_008086.1 1081077 1081670 D hypothetical protein 1081077..1081670 Helicobacter pylori HPAG1 4098319 YP_627769.1 CDS HPAG1_1028 NC_008086.1 1081667 1082803 D spore coat polysaccharide biosynthesis protein C 1081667..1082803 Helicobacter pylori HPAG1 4098320 YP_627770.1 CDS nrdF NC_008086.1 1083113 1084138 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1083113..1084138 Helicobacter pylori HPAG1 4098322 YP_627771.1 CDS pcm NC_008086.1 1084148 1084777 D catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase 1084148..1084777 Helicobacter pylori HPAG1 4098323 YP_627772.1 CDS HPAG1_1031 NC_008086.1 1084788 1085825 D hypothetical protein 1084788..1085825 Helicobacter pylori HPAG1 4098324 YP_627773.1 CDS truA NC_008086.1 1085826 1086554 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1085826..1086554 Helicobacter pylori HPAG1 4098325 YP_627774.1 CDS HPAG1_1033 NC_008086.1 1086548 1087582 R UDP-glucose 4-epimerase complement(1086548..1087582) Helicobacter pylori HPAG1 4098326 YP_627775.1 CDS HPAG1_1034 NC_008086.1 1088114 1089649 D putative outer membrane protein 1088114..1089649 Helicobacter pylori HPAG1 4098329 YP_627776.1 CDS HPAG1_1035 NC_008086.1 1089671 1090423 D short chain alcohol dehydrogenase 1089671..1090423 Helicobacter pylori HPAG1 4098330 YP_627777.1 CDS HPAG1_1036 NC_008086.1 1090636 1091508 R cysteine-rich protein C complement(1090636..1091508) Helicobacter pylori HPAG1 4098331 YP_627778.1 CDS HPAG1_1037 NC_008086.1 1091578 1092204 R 2-keto-3-deoxy-6-phosphogluconate aldolase complement(1091578..1092204) Helicobacter pylori HPAG1 4098332 YP_627779.1 CDS HPAG1_1038 NC_008086.1 1092223 1094049 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(1092223..1094049) Helicobacter pylori HPAG1 4098333 YP_627780.1 CDS HPAG1_1039 NC_008086.1 1094115 1095392 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1094115..1095392 Helicobacter pylori HPAG1 4099281 YP_627781.1 CDS HPAG1_1040 NC_008086.1 1095403 1096086 D glucose-6-phosphate 1-dehydrogenase 1095403..1096086 Helicobacter pylori HPAG1 4099282 YP_627782.1 CDS glk NC_008086.1 1096073 1097083 D catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase 1096073..1097083 Helicobacter pylori HPAG1 4099283 YP_627783.1 CDS HPAG1_1042 NC_008086.1 1097253 1098299 D mannitol dehydrogenase 1097253..1098299 Helicobacter pylori HPAG1 4099284 YP_627784.1 CDS HPAG1_1043 NC_008086.1 1098311 1099477 R putative lipopolysaccharide biosynthesis protein complement(1098311..1099477) Helicobacter pylori HPAG1 4099285 YP_627785.1 CDS HPAG1_1044 NC_008086.1 1099615 1100811 R putative lipopolysaccharide biosynthesis protein complement(1099615..1100811) Helicobacter pylori HPAG1 4099286 YP_627786.1 CDS HPAG1_1045 NC_008086.1 1100986 1102293 D hypothetical protein 1100986..1102293 Helicobacter pylori HPAG1 4099287 YP_627787.1 CDS HPAG1_1046 NC_008086.1 1102300 1102992 R outer membrane protein HorH complement(1102300..1102992) Helicobacter pylori HPAG1 4099288 YP_627788.1 CDS HPAG1_1047 NC_008086.1 1103242 1103802 D pyruvate flavodoxin oxidoreductase subunit gamma 1103242..1103802 Helicobacter pylori HPAG1 4099289 YP_627789.1 CDS porD NC_008086.1 1103818 1104210 D pyruvate flavodoxin oxidoreductase subunit delta 1103818..1104210 Helicobacter pylori HPAG1 4099290 YP_627790.1 CDS porA NC_008086.1 1104220 1105443 D pyruvate flavodoxin oxidoreductase subunit alpha 1104220..1105443 Helicobacter pylori HPAG1 4099291 YP_627791.1 CDS HPAG1_1050 NC_008086.1 1105456 1106400 D ferrodoxin oxidoreductase beta subunit 1105456..1106400 Helicobacter pylori HPAG1 4099292 YP_627792.1 CDS HPAG1_1051 NC_008086.1 1106510 1107832 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1106510..1107832 Helicobacter pylori HPAG1 4099293 YP_627793.1 CDS HPAG1_1052 NC_008086.1 1107897 1108730 D outer membrane protein Horl 1107897..1108730 Helicobacter pylori HPAG1 4099294 YP_627794.1 CDS HPAG1_1053 NC_008086.1 1108727 1110703 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1108727..1110703) Helicobacter pylori HPAG1 4099295 YP_627795.1 CDS HPAG1_1054 NC_008086.1 1110773 1111816 R hypothetical protein complement(1110773..1111816) Helicobacter pylori HPAG1 4099296 YP_627796.1 CDS HPAG1_1055 NC_008086.1 1112089 1112859 R cysteine-rich protein X complement(1112089..1112859) Helicobacter pylori HPAG1 4099297 YP_627797.1 CDS HPAG1_1056 NC_008086.1 1113126 1114829 R gamma-glutamyltranspeptidase complement(1113126..1114829) Helicobacter pylori HPAG1 4099298 YP_627798.1 CDS flgK NC_008086.1 1115029 1116849 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(1115029..1116849) Helicobacter pylori HPAG1 4099299 YP_627799.1 CDS HPAG1_1058 NC_008086.1 1116851 1117285 R hypothetical protein complement(1116851..1117285) Helicobacter pylori HPAG1 4099300 YP_627800.1 CDS HPAG1_1059 NC_008086.1 1117411 1118352 R type II DNA modification enzyme complement(1117411..1118352) Helicobacter pylori HPAG1 4098964 YP_627801.1 CDS HPAG1_1060 NC_008086.1 1118514 1118744 R hypothetical protein complement(1118514..1118744) Helicobacter pylori HPAG1 4098965 YP_627802.1 CDS HPAG1_1061 NC_008086.1 1118781 1118987 R hypothetical protein complement(1118781..1118987) Helicobacter pylori HPAG1 4098966 YP_627803.1 CDS HPAG1_1062 NC_008086.1 1119019 1119576 R peptidyl-prolyl cis-trans isomerase complement(1119019..1119576) Helicobacter pylori HPAG1 4098967 YP_627804.1 CDS HPAG1_1063 NC_008086.1 1119563 1120558 R hypothetical protein complement(1119563..1120558) Helicobacter pylori HPAG1 4098968 YP_627805.1 CDS HPAG1_1064 NC_008086.1 1120566 1121105 R peptidoglycan-associated lipoprotein precursor complement(1120566..1121105) Helicobacter pylori HPAG1 4098969 YP_627806.1 CDS tolB NC_008086.1 1121172 1122425 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(1121172..1122425) Helicobacter pylori HPAG1 4098970 YP_627807.1 CDS HPAG1_1066 NC_008086.1 1122422 1123246 R hypothetical protein complement(1122422..1123246) Helicobacter pylori HPAG1 4098971 YP_627808.1 CDS HPAG1_1067 NC_008086.1 1123265 1123666 R biopolymer transport protein complement(1123265..1123666) Helicobacter pylori HPAG1 4098972 YP_627809.1 CDS HPAG1_1068 NC_008086.1 1123719 1124288 R biopolymer transport protein complement(1123719..1124288) Helicobacter pylori HPAG1 4098973 YP_627810.1 CDS atpC NC_008086.1 1124299 1124670 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(1124299..1124670) Helicobacter pylori HPAG1 4098974 YP_627811.1 CDS HPAG1_1070 NC_008086.1 1124681 1126090 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(1124681..1126090) Helicobacter pylori HPAG1 4098975 YP_627812.1 CDS HPAG1_1071 NC_008086.1 1126114 1127019 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(1126114..1127019) Helicobacter pylori HPAG1 4098976 YP_627813.1 CDS HPAG1_1072 NC_008086.1 1127034 1128545 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(1127034..1128545) Helicobacter pylori HPAG1 4098977 YP_627814.1 CDS HPAG1_1073 NC_008086.1 1128568 1129110 R produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(1128568..1129110) Helicobacter pylori HPAG1 4098978 YP_627815.1 CDS HPAG1_1074 NC_008086.1 1129111 1129626 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(1129111..1129626) Helicobacter pylori HPAG1 4098979 YP_627816.1 CDS HPAG1_1075 NC_008086.1 1129630 1130064 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B' is part of the membrane proton channel.; F0F1 ATP synthase subunit B' complement(1129630..1130064) Helicobacter pylori HPAG1 4098980 YP_627817.1 CDS HPAG1_1076 NC_008086.1 1130175 1131047 R plasmid replication-partition related protein complement(1130175..1131047) Helicobacter pylori HPAG1 4098981 YP_627818.1 CDS HPAG1_1077 NC_008086.1 1131051 1131845 R spoOJ regulator complement(1131051..1131845) Helicobacter pylori HPAG1 4098982 YP_627819.1 CDS HPAG1_1078 NC_008086.1 1131848 1132486 R catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase complement(1131848..1132486) Helicobacter pylori HPAG1 4097978 YP_627820.1 CDS fmt NC_008086.1 1132483 1133400 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(1132483..1133400) Helicobacter pylori HPAG1 4097979 YP_627821.1 CDS HPAG1_1080 NC_008086.1 1133402 1135849 R hypothetical protein complement(1133402..1135849) Helicobacter pylori HPAG1 4097980 YP_627822.1 CDS HPAG1_1081 NC_008086.1 1135910 1137208 R hypothetical protein complement(1135910..1137208) Helicobacter pylori HPAG1 4097981 YP_627823.1 CDS HPAG1_1082 NC_008086.1 1137467 1137562 D hypothetical protein 1137467..1137562 Helicobacter pylori HPAG1 4097982 YP_627824.1 CDS HPAG1_1083 NC_008086.1 1137948 1138142 R hypothetical protein complement(1137948..1138142) Helicobacter pylori HPAG1 4097983 YP_627825.1 CDS HPAG1_1084 NC_008086.1 1140747 1141106 R hypothetical protein complement(1140747..1141106) Helicobacter pylori HPAG1 4097985 YP_627826.1 CDS HPAG1_1085 NC_008086.1 1141099 1141335 R hypothetical protein complement(1141099..1141335) Helicobacter pylori HPAG1 4097986 YP_627827.1 CDS rplS NC_008086.1 1141947 1142303 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(1141947..1142303) Helicobacter pylori HPAG1 4097987 YP_627828.1 CDS trmD NC_008086.1 1142326 1143015 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(1142326..1143015) Helicobacter pylori HPAG1 4097988 YP_627829.1 CDS rimM NC_008086.1 1143016 1143570 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(1143016..1143570) Helicobacter pylori HPAG1 4097989 YP_627830.1 CDS HPAG1_1089 NC_008086.1 1143571 1143894 R hypothetical protein complement(1143571..1143894) Helicobacter pylori HPAG1 4097990 YP_627831.1 CDS rpsP NC_008086.1 1143911 1144141 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(1143911..1144141) Helicobacter pylori HPAG1 4097991 YP_627832.1 CDS HPAG1_1091 NC_008086.1 1144215 1145561 R signal recognition particle protein complement(1144215..1145561) Helicobacter pylori HPAG1 4097992 YP_627833.1 CDS valS NC_008086.1 1145576 1148200 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1145576..1148200) Helicobacter pylori HPAG1 4097993 YP_627834.1 CDS HPAG1_1093 NC_008086.1 1148331 1148738 D binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 1148331..1148738 Helicobacter pylori HPAG1 4097994 YP_627835.1 CDS murG NC_008086.1 1148750 1149811 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1148750..1149811 Helicobacter pylori HPAG1 4097995 YP_627836.1 CDS HPAG1_1095 NC_008086.1 1149919 1152009 D outer membrane protein HopI 1149919..1152009 Helicobacter pylori HPAG1 4097996 YP_627837.1 CDS HPAG1_1096 NC_008086.1 1152032 1155754 D outer membrane protein HopL 1152032..1155754 Helicobacter pylori HPAG1 4098373 YP_627838.1 CDS HPAG1_1097 NC_008086.1 1155770 1156543 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1155770..1156543 Helicobacter pylori HPAG1 4098374 YP_627839.1 CDS HPAG1_1098 NC_008086.1 1156571 1157104 D cell filamentation protein 1156571..1157104 Helicobacter pylori HPAG1 4098375 YP_627840.1 CDS HPAG1_1099 NC_008086.1 1157351 1157773 R putative metalloprotease complement(1157351..1157773) Helicobacter pylori HPAG1 4098376 YP_627841.1 CDS HPAG1_1100 NC_008086.1 1157827 1158321 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(1157827..1158321) Helicobacter pylori HPAG1 4098377 YP_627842.1 CDS HPAG1_1101 NC_008086.1 1158413 1158994 R hypothetical protein complement(1158413..1158994) Helicobacter pylori HPAG1 4098378 YP_627843.1 CDS HPAG1_1102 NC_008086.1 1159117 1159308 D cation transport subunit for cbb3-type oxidase 1159117..1159308 Helicobacter pylori HPAG1 4098379 YP_627844.1 CDS HPAG1_1103 NC_008086.1 1159334 1160308 D thioredoxin reductase 1159334..1160308 Helicobacter pylori HPAG1 4098380 YP_627845.1 CDS HPAG1_1104 NC_008086.1 1160315 1161475 R tetracycline resistance protein tetA(P) complement(1160315..1161475) Helicobacter pylori HPAG1 4098381 YP_627846.1 CDS pgi NC_008086.1 1161539 1163176 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1161539..1163176 Helicobacter pylori HPAG1 4098382 YP_627847.1 CDS HPAG1_1106 NC_008086.1 1163482 1164897 D outer membrane protein HofH 1163482..1164897 Helicobacter pylori HPAG1 4098383 YP_627848.1 CDS HPAG1_1107 NC_008086.1 1165190 1167253 R carbon starvation protein complement(1165190..1167253) Helicobacter pylori HPAG1 4098384 YP_627849.1 CDS HPAG1_1108 NC_008086.1 1167463 1168116 D glutamine ABC transporter, permease protein 1167463..1168116 Helicobacter pylori HPAG1 4098385 YP_627850.1 CDS HPAG1_1109 NC_008086.1 1168119 1168790 D glutamine ABC transporter, permease protein 1168119..1168790 Helicobacter pylori HPAG1 4098386 YP_627851.1 CDS HPAG1_1110 NC_008086.1 1168792 1169538 D glutamine ABC transporter, ATP-binding protein 1168792..1169538 Helicobacter pylori HPAG1 4098387 YP_627852.1 CDS HPAG1_1111 NC_008086.1 1169587 1170420 D glutamine ABC transporter, periplasmic glutamine-binding protein 1169587..1170420 Helicobacter pylori HPAG1 4098388 YP_627853.1 CDS HPAG1_1112 NC_008086.1 1170542 1171093 D hypothetical protein 1170542..1171093 Helicobacter pylori HPAG1 4098389 YP_627854.1 CDS HPAG1_1113 NC_008086.1 1171316 1172539 R glucose/galactose transporter complement(1171316..1172539) Helicobacter pylori HPAG1 4098390 YP_627855.1 CDS HPAG1_1114 NC_008086.1 1172668 1173975 R hypothetical protein complement(1172668..1173975) Helicobacter pylori HPAG1 4098391 YP_627856.1 CDS HPAG1_1115 NC_008086.1 1174427 1176352 R outer membrane protein HopQ complement(1174427..1176352) Helicobacter pylori HPAG1 4098260 YP_627857.1 CDS HPAG1_1116 NC_008086.1 1176598 1176690 D hypothetical protein 1176598..1176690 Helicobacter pylori HPAG1 4098261 YP_627858.1 CDS HPAG1_1117 NC_008086.1 1176813 1177514 R purine-nucleoside phosphorylase complement(1176813..1177514) Helicobacter pylori HPAG1 4098262 YP_627859.1 CDS HPAG1_1118 NC_008086.1 1177511 1178752 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(1177511..1178752) Helicobacter pylori HPAG1 4098263 YP_627860.1 CDS HPAG1_1119 NC_008086.1 1178764 1180020 R pyrimidine nucleoside transport protein complement(1178764..1180020) Helicobacter pylori HPAG1 4098264 YP_627861.1 CDS HPAG1_1120 NC_008086.1 1180333 1181664 D multidrug-efflux transporter 1180333..1181664 Helicobacter pylori HPAG1 4098266 YP_627862.1 CDS HPAG1_1121 NC_008086.1 1181684 1182445 D hypothetical protein 1181684..1182445 Helicobacter pylori HPAG1 4098267 YP_627863.1 CDS HPAG1_1122 NC_008086.1 1182454 1183605 R Na+/H+ antiporter complement(1182454..1183605) Helicobacter pylori HPAG1 4098268 YP_627864.1 CDS HPAG1_1123 NC_008086.1 1183631 1185010 R hypothetical protein complement(1183631..1185010) Helicobacter pylori HPAG1 4098270 YP_627865.1 CDS HPAG1_1124 NC_008086.1 1184984 1185184 D hypothetical protein 1184984..1185184 Helicobacter pylori HPAG1 4098269 YP_627866.1 CDS HPAG1_1125 NC_008086.1 1185171 1186346 R sugar efflux transporter complement(1185171..1186346) Helicobacter pylori HPAG1 4098271 YP_627867.1 CDS HPAG1_1126 NC_008086.1 1186622 1187365 D alpha-carbonic anhydrase 1186622..1187365 Helicobacter pylori HPAG1 4098272 YP_627868.1 CDS HPAG1_1127 NC_008086.1 1187586 1188635 R hypothetical protein complement(1187586..1188635) Helicobacter pylori HPAG1 4098273 YP_627869.1 CDS HPAG1_1128 NC_008086.1 1188900 1190063 R hypothetical protein complement(1188900..1190063) Helicobacter pylori HPAG1 4098274 YP_627870.1 CDS HPAG1_1129 NC_008086.1 1190348 1191415 R hypothetical protein complement(1190348..1191415) Helicobacter pylori HPAG1 4098275 YP_627871.1 CDS HPAG1_1130 NC_008086.1 1191843 1192883 R aspartate-semialdehyde dehydrogenase complement(1191843..1192883) Helicobacter pylori HPAG1 4098276 YP_627872.1 CDS hisS NC_008086.1 1192870 1194198 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(1192870..1194198) Helicobacter pylori HPAG1 4098277 YP_627873.1 CDS HPAG1_1132 NC_008086.1 1194260 1195309 D ADP-heptose-LPS heptosyltransferase II 1194260..1195309 Helicobacter pylori HPAG1 4098278 YP_627874.1 CDS HPAG1_1133 NC_008086.1 1195501 1195890 R hypothetical protein complement(1195501..1195890) Helicobacter pylori HPAG1 4098425 YP_627875.1 CDS HPAG1_1134 NC_008086.1 1196244 1198322 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1196244..1198322) Helicobacter pylori HPAG1 4098426 YP_627876.1 CDS HPAG1_1135 NC_008086.1 1198334 1198801 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1198334..1198801) Helicobacter pylori HPAG1 4098427 YP_627877.1 CDS rpsL NC_008086.1 1198817 1199224 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1198817..1199224) Helicobacter pylori HPAG1 4098428 YP_627878.1 CDS HPAG1_1137 NC_008086.1 1199313 1207985 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; fusion of rpoB and rpoC; beta and beta' subunits are part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta/beta' complement(1199313..1207985) Helicobacter pylori HPAG1 4098429 YP_627879.1 CDS rplL NC_008086.1 1208215 1208592 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1208215..1208592) Helicobacter pylori HPAG1 4098430 YP_627880.1 CDS rplJ NC_008086.1 1208638 1209132 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1208638..1209132) Helicobacter pylori HPAG1 4098431 YP_627881.1 CDS rplA NC_008086.1 1209241 1209945 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1209241..1209945) Helicobacter pylori HPAG1 4098432 YP_627882.1 CDS rplK NC_008086.1 1209990 1210415 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1209990..1210415) Helicobacter pylori HPAG1 4098433 YP_627883.1 CDS nusG NC_008086.1 1210433 1210963 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1210433..1210963) Helicobacter pylori HPAG1 4098434 YP_627884.1 CDS secE NC_008086.1 1210990 1211169 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1210990..1211169) Helicobacter pylori HPAG1 4098435 YP_627885.1 CDS rpmG NC_008086.1 1211427 1211585 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1211427..1211585) Helicobacter pylori HPAG1 4098437 YP_627886.1 CDS HPAG1_1145 NC_008086.1 1211619 1212152 R translation elongation factor EF-Tu complement(1211619..1212152) Helicobacter pylori HPAG1 4098438 YP_627887.1 CDS HPAG1_1146 NC_008086.1 1212092 1212817 R translation elongation factor EF-Tu complement(1212092..1212817) Helicobacter pylori HPAG1 4098439 YP_627888.1 CDS HPAG1_1147 NC_008086.1 1213514 1215250 D ABC transporter ATPase 1213514..1215250 Helicobacter pylori HPAG1 4099172 YP_627889.1 CDS HPAG1_1148 NC_008086.1 1215259 1215927 R hypothetical protein complement(1215259..1215927) Helicobacter pylori HPAG1 4099173 YP_627890.1 CDS HPAG1_1149 NC_008086.1 1216030 1217019 R type II adenine specific DNA methyltransferase complement(1216030..1217019) Helicobacter pylori HPAG1 4099174 YP_627891.1 CDS HPAG1_1150 NC_008086.1 1217028 1217276 R iceA1 complement(1217028..1217276) Helicobacter pylori HPAG1 4099175 YP_627892.1 CDS HPAG1_1151 NC_008086.1 1217269 1217715 R iceA1 complement(1217269..1217715) Helicobacter pylori HPAG1 4099176 YP_627893.1 CDS HPAG1_1152 NC_008086.1 1217800 1218315 R serine acetyltransferase complement(1217800..1218315) Helicobacter pylori HPAG1 4099177 YP_627894.1 CDS HPAG1_1153 NC_008086.1 1218908 1219225 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(1218908..1219225) Helicobacter pylori HPAG1 4099180 YP_627895.1 CDS HPAG1_1154 NC_008086.1 1219358 1221424 R polynucleotide phosphorylase/polyadenylase complement(1219358..1221424) Helicobacter pylori HPAG1 4099181 YP_627896.1 CDS HPAG1_1155 NC_008086.1 1221427 1222137 R hypothetical protein complement(1221427..1222137) Helicobacter pylori HPAG1 4099182 YP_627897.1 CDS HPAG1_1156 NC_008086.1 1222146 1224407 R organic solvent tolerance protein complement(1222146..1224407) Helicobacter pylori HPAG1 4099183 YP_627898.1 CDS HPAG1_1157 NC_008086.1 1224410 1224889 R hypothetical protein complement(1224410..1224889) Helicobacter pylori HPAG1 4098732 YP_627899.1 CDS HPAG1_1158 NC_008086.1 1224938 1226212 R glycinamide ribonucleotide synthetase complement(1224938..1226212) Helicobacter pylori HPAG1 4098733 YP_627900.1 CDS HPAG1_1159 NC_008086.1 1226332 1226532 D hypothetical protein 1226332..1226532 Helicobacter pylori HPAG1 4098734 YP_627901.1 CDS HPAG1_1160 NC_008086.1 1226595 1226975 R hypothetical protein complement(1226595..1226975) Helicobacter pylori HPAG1 4098735 YP_627902.1 CDS HPAG1_1161 NC_008086.1 1227138 1227461 R hypothetical protein complement(1227138..1227461) Helicobacter pylori HPAG1 4098736 YP_627903.1 CDS HPAG1_1162 NC_008086.1 1227855 1228541 R ABC transporter, ATP-binding protein complement(1227855..1228541) Helicobacter pylori HPAG1 4098737 YP_627904.1 CDS HPAG1_1163 NC_008086.1 1228535 1229239 R catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase complement(1228535..1229239) Helicobacter pylori HPAG1 4098738 YP_627905.1 CDS HPAG1_1164 NC_008086.1 1229280 1232120 R D-lactate dehydrogenase complement(1229280..1232120) Helicobacter pylori HPAG1 4098739 YP_627906.1 CDS HPAG1_1165 NC_008086.1 1232192 1232524 D hypothetical protein 1232192..1232524 Helicobacter pylori HPAG1 4098740 YP_627907.1 CDS hemD NC_008086.1 1232527 1233207 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1232527..1233207 Helicobacter pylori HPAG1 4098741 YP_627908.1 CDS HPAG1_1167 NC_008086.1 1233255 1233647 D may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling; camphor resistance protein CrcB 1233255..1233647 Helicobacter pylori HPAG1 4098742 YP_627909.1 CDS HPAG1_1168 NC_008086.1 1233698 1234756 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1233698..1234756) Helicobacter pylori HPAG1 4098743 YP_627910.1 CDS HPAG1_1169 NC_008086.1 1234832 1235122 D hypothetical protein 1234832..1235122 Helicobacter pylori HPAG1 4098744 YP_627911.1 CDS HPAG1_1170 NC_008086.1 1235283 1235750 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1235283..1235750 Helicobacter pylori HPAG1 4098745 YP_627912.1 CDS HPAG1_1171 NC_008086.1 1235752 1236969 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1235752..1236969 Helicobacter pylori HPAG1 4098746 YP_627913.1 CDS HPAG1_1172 NC_008086.1 1236966 1237508 D hypothetical protein 1236966..1237508 Helicobacter pylori HPAG1 4098747 YP_627914.1 CDS HPAG1_1173 NC_008086.1 1237505 1238161 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1237505..1238161 Helicobacter pylori HPAG1 4098748 YP_627915.1 CDS HPAG1_1174 NC_008086.1 1238158 1239300 D dihydropteroate synthase 1238158..1239300 Helicobacter pylori HPAG1 4098749 YP_627916.1 CDS HPAG1_1175 NC_008086.1 1239388 1239849 R hypothetical protein complement(1239388..1239849) Helicobacter pylori HPAG1 4098750 YP_627917.1 CDS HPAG1_1176 NC_008086.1 1240239 1241147 D hypothetical protein 1240239..1241147 Helicobacter pylori HPAG1 4098751 YP_627918.1 CDS HPAG1_1177 NC_008086.1 1241138 1242385 D hypothetical protein 1241138..1242385 Helicobacter pylori HPAG1 4098090 YP_627919.1 CDS HPAG1_1178 NC_008086.1 1242464 1243015 D hypothetical protein 1242464..1243015 Helicobacter pylori HPAG1 4098091 YP_627920.1 CDS HPAG1_1179 NC_008086.1 1243015 1244142 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1243015..1244142 Helicobacter pylori HPAG1 4098092 YP_627921.1 CDS amiF NC_008086.1 1244308 1245312 D formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase 1244308..1245312 Helicobacter pylori HPAG1 4098093 YP_627923.1 CDS HPAG1_1182 NC_008086.1 1245751 1246323 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(1245751..1246323) Helicobacter pylori HPAG1 4098095 YP_627924.1 CDS alaS NC_008086.1 1246325 1248868 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1246325..1248868) Helicobacter pylori HPAG1 4098096 YP_627925.1 CDS HPAG1_1184 NC_008086.1 1248987 1249217 D hypothetical protein 1248987..1249217 Helicobacter pylori HPAG1 4098097 YP_627926.1 CDS HPAG1_1185 NC_008086.1 1249607 1249855 R hypothetical protein complement(1249607..1249855) Helicobacter pylori HPAG1 4098098 YP_627927.1 CDS HPAG1_1186 NC_008086.1 1250171 1252387 R outer membrane protein HopU complement(1250171..1252387) Helicobacter pylori HPAG1 4098099 YP_627928.1 CDS rpsR NC_008086.1 1252912 1253169 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1252912..1253169) Helicobacter pylori HPAG1 4098100 YP_627929.1 CDS HPAG1_1188 NC_008086.1 1253192 1253737 R binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein complement(1253192..1253737) Helicobacter pylori HPAG1 4098101 YP_627930.1 CDS rpsF NC_008086.1 1253747 1254175 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1253747..1254175) Helicobacter pylori HPAG1 4098102 YP_627931.1 CDS HPAG1_1190 NC_008086.1 1254319 1255341 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(1254319..1255341) Helicobacter pylori HPAG1 4098103 YP_627932.1 CDS HPAG1_1191 NC_008086.1 1255331 1257265 R 3'-5' exoribonuclease R complement(1255331..1257265) Helicobacter pylori HPAG1 4098104 YP_627933.1 CDS aroE NC_008086.1 1257265 1258056 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1257265..1258056) Helicobacter pylori HPAG1 4098105 YP_627934.1 CDS HPAG1_1193 NC_008086.1 1258064 1258654 R hypothetical protein complement(1258064..1258654) Helicobacter pylori HPAG1 4098106 YP_627935.1 CDS HPAG1_1194 NC_008086.1 1258663 1259709 R oligopeptide ABC transporter, permease protein complement(1258663..1259709) Helicobacter pylori HPAG1 4098107 YP_627936.1 CDS HPAG1_1195 NC_008086.1 1259706 1260971 R oligopeptide ABC transporter complement(1259706..1260971) Helicobacter pylori HPAG1 4098108 YP_627937.1 CDS HPAG1_1196 NC_008086.1 1260956 1261486 R oligopeptide ABC transporter complement(1260956..1261486) Helicobacter pylori HPAG1 4098279 YP_627938.1 CDS HPAG1_1197 NC_008086.1 1261487 1262506 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1261487..1262506) Helicobacter pylori HPAG1 4098280 YP_627939.1 CDS HPAG1_1198 NC_008086.1 1262538 1263275 R biotin synthesis protein complement(1262538..1263275) Helicobacter pylori HPAG1 4098281 YP_627940.1 CDS secG NC_008086.1 1263392 1263982 D preprotein translocase subunit SecG 1263392..1263982 Helicobacter pylori HPAG1 4098282 YP_627941.1 CDS frr NC_008086.1 1263982 1264539 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1263982..1264539 Helicobacter pylori HPAG1 4098283 YP_627942.1 CDS pyrE NC_008086.1 1264543 1265148 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1264543..1265148 Helicobacter pylori HPAG1 4098284 YP_627943.1 CDS HPAG1_1202 NC_008086.1 1265138 1265602 D similar to mitochondrial protein 4; hypothetical protein 1265138..1265602 Helicobacter pylori HPAG1 4098285 YP_627944.1 CDS HPAG1_1203 NC_008086.1 1265599 1266303 D hypothetical protein 1265599..1266303 Helicobacter pylori HPAG1 4098286 YP_627945.1 CDS HPAG1_1204 NC_008086.1 1266396 1266797 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit A 1266396..1266797 Helicobacter pylori HPAG1 4098287 YP_627946.1 CDS HPAG1_1205 NC_008086.1 1266797 1267276 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1266797..1267276 Helicobacter pylori HPAG1 4098288 YP_627947.1 CDS HPAG1_1206 NC_008086.1 1267273 1268073 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit C 1267273..1268073 Helicobacter pylori HPAG1 4098289 YP_627948.1 CDS HPAG1_1207 NC_008086.1 1268075 1269304 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1268075..1269304 Helicobacter pylori HPAG1 4098290 YP_627949.1 CDS HPAG1_1208 NC_008086.1 1269301 1269531 D NADH-ubiquinone oxidoreductase chain E 1269301..1269531 Helicobacter pylori HPAG1 4098291 YP_627950.1 CDS HPAG1_1209 NC_008086.1 1269534 1270520 D NADH-ubiquinone oxidoreductase chain F 1269534..1270520 Helicobacter pylori HPAG1 4098292 YP_627951.1 CDS HPAG1_1210 NC_008086.1 1270517 1273051 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G 1270517..1273051 Helicobacter pylori HPAG1 4098293 YP_627952.1 CDS HPAG1_1211 NC_008086.1 1273048 1274037 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1273048..1274037 Helicobacter pylori HPAG1 4098294 YP_627953.1 CDS HPAG1_1212 NC_008086.1 1274048 1274710 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1274048..1274710 Helicobacter pylori HPAG1 4098295 YP_627954.1 CDS HPAG1_1213 NC_008086.1 1274703 1275251 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1274703..1275251 Helicobacter pylori HPAG1 4098296 YP_627955.1 CDS HPAG1_1214 NC_008086.1 1275248 1275550 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1275248..1275550 Helicobacter pylori HPAG1 4098297 YP_627956.1 CDS HPAG1_1215 NC_008086.1 1275553 1277391 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1275553..1277391 Helicobacter pylori HPAG1 4098298 YP_627957.1 CDS HPAG1_1216 NC_008086.1 1277395 1278933 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1277395..1278933 Helicobacter pylori HPAG1 4098241 YP_627958.1 CDS HPAG1_1217 NC_008086.1 1278920 1280392 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1278920..1280392 Helicobacter pylori HPAG1 4098242 YP_627959.1 CDS HPAG1_1218 NC_008086.1 1280382 1282787 D paralysed flagella protein 1280382..1282787 Helicobacter pylori HPAG1 4098243 YP_627960.1 CDS HPAG1_1219 NC_008086.1 1282789 1284168 D phosphomannomutase 1282789..1284168 Helicobacter pylori HPAG1 4098244 YP_627961.1 CDS HPAG1_1220 NC_008086.1 1284349 1284768 D hypothetical protein 1284349..1284768 Helicobacter pylori HPAG1 4098245 YP_627962.1 CDS HPAG1_1221 NC_008086.1 1285061 1285402 D hypothetical protein 1285061..1285402 Helicobacter pylori HPAG1 4098246 YP_627963.1 CDS HPAG1_1222 NC_008086.1 1285423 1286037 R hypothetical protein complement(1285423..1286037) Helicobacter pylori HPAG1 4098247 YP_627964.1 CDS HPAG1_1223 NC_008086.1 1286025 1286687 R nicotinamide mononucleotide transporter complement(1286025..1286687) Helicobacter pylori HPAG1 4098248 YP_627965.1 CDS HPAG1_1224 NC_008086.1 1286872 1287342 R hypothetical protein complement(1286872..1287342) Helicobacter pylori HPAG1 4098249 YP_627966.1 CDS HPAG1_1225 NC_008086.1 1287366 1287731 R hypothetical protein complement(1287366..1287731) Helicobacter pylori HPAG1 4098250 YP_627967.1 CDS HPAG1_1226 NC_008086.1 1288422 1289075 D putative transcriptional regulator 1288422..1289075 Helicobacter pylori HPAG1 4098251 YP_627968.1 CDS HPAG1_1227 NC_008086.1 1289139 1289687 R hypothetical protein complement(1289139..1289687) Helicobacter pylori HPAG1 4098252 YP_627969.1 CDS HPAG1_1228 NC_008086.1 1289811 1290548 D acid phosphatase lipoprotein 1289811..1290548 Helicobacter pylori HPAG1 4098253 YP_627970.1 CDS HPAG1_1229 NC_008086.1 1290617 1291675 D hypothetical protein 1290617..1291675 Helicobacter pylori HPAG1 4098254 YP_627971.1 CDS HPAG1_1230 NC_008086.1 1291907 1293409 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1291907..1293409 Helicobacter pylori HPAG1 4098255 YP_627972.1 CDS HPAG1_1231 NC_008086.1 1293406 1293990 D TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity; anthranilate synthase component II 1293406..1293990 Helicobacter pylori HPAG1 4098256 YP_627973.1 CDS trpD NC_008086.1 1293987 1294994 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1293987..1294994 Helicobacter pylori HPAG1 4098257 YP_627974.1 CDS HPAG1_1233 NC_008086.1 1294987 1296345 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1294987..1296345 Helicobacter pylori HPAG1 4098258 YP_627975.1 CDS HPAG1_1234 NC_008086.1 1296346 1297527 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1296346..1297527 Helicobacter pylori HPAG1 4098259 YP_627976.1 CDS trpA NC_008086.1 1297524 1298312 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1297524..1298312 Helicobacter pylori HPAG1 4098017 YP_627977.1 CDS HPAG1_1236 NC_008086.1 1298489 1298776 D hypothetical protein 1298489..1298776 Helicobacter pylori HPAG1 4098018 YP_627978.1 CDS rplQ NC_008086.1 1299486 1299836 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1299486..1299836) Helicobacter pylori HPAG1 4098019 YP_627979.1 CDS HPAG1_1238 NC_008086.1 1299836 1300870 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1299836..1300870) Helicobacter pylori HPAG1 4098020 YP_627980.1 CDS rpsD NC_008086.1 1300882 1301508 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1300882..1301508) Helicobacter pylori HPAG1 4098021 YP_627981.1 CDS HPAG1_1240 NC_008086.1 1301518 1301913 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1301518..1301913) Helicobacter pylori HPAG1 4098022 YP_627982.1 CDS rpsM NC_008086.1 1301936 1302298 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1301936..1302298) Helicobacter pylori HPAG1 4098023 YP_627983.1 CDS rpmJ NC_008086.1 1302302 1302415 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 complement(1302302..1302415) Helicobacter pylori HPAG1 4098024 YP_627984.1 CDS infA NC_008086.1 1302494 1302712 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1302494..1302712) Helicobacter pylori HPAG1 4098025 YP_627985.1 CDS HPAG1_1244 NC_008086.1 1302712 1303473 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1302712..1303473) Helicobacter pylori HPAG1 4098026 YP_627986.1 CDS secY NC_008086.1 1303473 1304735 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1303473..1304735) Helicobacter pylori HPAG1 4098027 YP_627987.2 CDS rplO NC_008086.1 1304773 1305174 R late assembly protein; 50S ribosomal protein L15 complement(1304773..1305174) Helicobacter pylori HPAG1 4098028 YP_627988.2 CDS rpsE NC_008086.1 1305194 1305637 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1305194..1305637) Helicobacter pylori HPAG1 4098029 YP_627989.2 CDS rplR NC_008086.1 1305652 1306008 R binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 complement(1305652..1306008) Helicobacter pylori HPAG1 4098030 YP_627990.1 CDS rplF NC_008086.1 1306022 1306558 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1306022..1306558) Helicobacter pylori HPAG1 4098031 YP_627991.1 CDS rpsH NC_008086.1 1306569 1306964 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1306569..1306964) Helicobacter pylori HPAG1 4098032 YP_627992.1 CDS rpsN NC_008086.1 1306974 1307159 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 complement(1306974..1307159) Helicobacter pylori HPAG1 4098033 YP_627993.1 CDS rplE NC_008086.1 1307169 1307714 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1307169..1307714) Helicobacter pylori HPAG1 4098034 YP_627994.1 CDS rplX NC_008086.1 1307727 1307948 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1307727..1307948) Helicobacter pylori HPAG1 4098035 YP_627995.1 CDS rplN NC_008086.1 1307948 1308316 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1307948..1308316) Helicobacter pylori HPAG1 4098036 YP_627996.1 CDS rpsQ NC_008086.1 1308318 1308578 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1308318..1308578) Helicobacter pylori HPAG1 4098109 YP_627997.1 CDS HPAG1_1256 NC_008086.1 1308592 1308792 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1308592..1308792) Helicobacter pylori HPAG1 4098110 YP_627998.1 CDS rplP NC_008086.1 1308779 1309204 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1308779..1309204) Helicobacter pylori HPAG1 4098111 YP_627999.1 CDS rpsC NC_008086.1 1309207 1309911 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1309207..1309911) Helicobacter pylori HPAG1 4098112 YP_628000.1 CDS rplV NC_008086.1 1309915 1310283 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1309915..1310283) Helicobacter pylori HPAG1 4098113 YP_628001.1 CDS rpsS NC_008086.1 1310293 1310574 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1310293..1310574) Helicobacter pylori HPAG1 4098114 YP_628002.1 CDS rplB NC_008086.1 1310586 1311416 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1310586..1311416) Helicobacter pylori HPAG1 4098115 YP_628003.1 CDS rplW NC_008086.1 1311433 1311714 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1311433..1311714) Helicobacter pylori HPAG1 4098116 YP_628004.1 CDS rplD NC_008086.1 1311718 1312365 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1311718..1312365) Helicobacter pylori HPAG1 4098117 YP_628005.1 CDS rplC NC_008086.1 1312400 1312975 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1312400..1312975) Helicobacter pylori HPAG1 4098118 YP_628006.1 CDS rpsJ NC_008086.1 1313012 1313326 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1313012..1313326) Helicobacter pylori HPAG1 4098119 YP_628007.1 CDS HPAG1_1266 NC_008086.1 1313536 1314624 D hypothetical protein 1313536..1314624 Helicobacter pylori HPAG1 4098120 YP_628008.1 CDS HPAG1_1267 NC_008086.1 1314928 1315506 D hypothetical protein 1314928..1315506 Helicobacter pylori HPAG1 4098121 YP_628009.1 CDS rnhB NC_008086.1 1315480 1316094 R RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII complement(1315480..1316094) Helicobacter pylori HPAG1 4098122 YP_628010.1 CDS HPAG1_1269 NC_008086.1 1316186 1316371 R hypothetical protein complement(1316186..1316371) Helicobacter pylori HPAG1 4098123 YP_628011.1 CDS fumC NC_008086.1 1316393 1317784 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1316393..1317784) Helicobacter pylori HPAG1 4098124 YP_628012.1 CDS HPAG1_1271 NC_008086.1 1317960 1318337 D hypothetical protein 1317960..1318337 Helicobacter pylori HPAG1 4098125 YP_628013.1 CDS HPAG1_1272 NC_008086.1 1318342 1319580 D hypothetical protein 1318342..1319580 Helicobacter pylori HPAG1 4098126 YP_628014.1 CDS HPAG1_1273 NC_008086.1 1319577 1320593 D cation efflux system protein 1319577..1320593 Helicobacter pylori HPAG1 4098127 YP_628015.1 CDS HPAG1_1274 NC_008086.1 1320594 1323707 D cation efflux system protein 1320594..1323707 Helicobacter pylori HPAG1 4098221 YP_628016.1 CDS HPAG1_1275 NC_008086.1 1323704 1324051 R hypothetical protein complement(1323704..1324051) Helicobacter pylori HPAG1 4098222 YP_628017.1 CDS HPAG1_1276 NC_008086.1 1324045 1324731 R hypothetical protein complement(1324045..1324731) Helicobacter pylori HPAG1 4098223 YP_628018.1 CDS HPAG1_1277 NC_008086.1 1324742 1325851 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1324742..1325851) Helicobacter pylori HPAG1 4098224 YP_628019.1 CDS HPAG1_1278 NC_008086.1 1325976 1327106 D hypothetical protein 1325976..1327106 Helicobacter pylori HPAG1 4098225 YP_628020.1 CDS HPAG1_1279 NC_008086.1 1327308 1327550 D hypothetical protein 1327308..1327550 Helicobacter pylori HPAG1 4098226 YP_628021.1 CDS HPAG1_1280 NC_008086.1 1327620 1327736 D hypothetical protein 1327620..1327736 Helicobacter pylori HPAG1 4098227 YP_628022.1 CDS HPAG1_1281 NC_008086.1 1327807 1327998 D hypothetical protein 1327807..1327998 Helicobacter pylori HPAG1 4098228 YP_628023.1 CDS mnmA NC_008086.1 1328059 1329120 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1328059..1329120) Helicobacter pylori HPAG1 4098229 YP_628024.1 CDS HPAG1_1283 NC_008086.1 1329229 1329990 D hypothetical protein 1329229..1329990 Helicobacter pylori HPAG1 4098230 YP_628025.1 CDS HPAG1_1284 NC_008086.1 1329987 1330511 R hypothetical protein complement(1329987..1330511) Helicobacter pylori HPAG1 4098231 YP_628026.1 CDS HPAG1_1285 NC_008086.1 1330495 1330941 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(1330495..1330941) Helicobacter pylori HPAG1 4098232 YP_628027.1 CDS HPAG1_1286 NC_008086.1 1331201 1331701 D biopolymer transport protein 1331201..1331701 Helicobacter pylori HPAG1 4098233 YP_628028.1 CDS HPAG1_1287 NC_008086.1 1331698 1332087 D biopolymer transport protein 1331698..1332087 Helicobacter pylori HPAG1 4098234 YP_628029.1 CDS HPAG1_1288 NC_008086.1 1332053 1332910 D siderophore-mediated iron transport protein 1332053..1332910 Helicobacter pylori HPAG1 4098235 YP_628030.1 CDS HPAG1_1289 NC_008086.1 1333105 1335183 D outer membrane protein 1333105..1335183 Helicobacter pylori HPAG1 4098236 YP_628031.1 CDS HPAG1_1290 NC_008086.1 1335323 1336051 R hypothetical protein complement(1335323..1336051) Helicobacter pylori HPAG1 4098237 YP_628032.1 CDS HPAG1_1291 NC_008086.1 1336058 1337014 R magnesium and cobalt transport protein complement(1336058..1337014) Helicobacter pylori HPAG1 4098238 YP_628033.1 CDS pgk NC_008086.1 1337030 1338238 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(1337030..1338238) Helicobacter pylori HPAG1 4098239 YP_628034.1 CDS HPAG1_1293 NC_008086.1 1338254 1339246 R glyceraldehyde-3-phosphate dehydrogenase complement(1338254..1339246) Helicobacter pylori HPAG1 4098240 YP_628035.1 CDS HPAG1_1294 NC_008086.1 1339335 1340036 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(1339335..1340036) Helicobacter pylori HPAG1 4098442 YP_628036.1 CDS HPAG1_1295 NC_008086.1 1340033 1340749 R 1-acyl-glycerol-3-phosphate acyltransferase complement(1340033..1340749) Helicobacter pylori HPAG1 4098443 YP_628037.1 CDS HPAG1_1296 NC_008086.1 1340736 1341851 R hypothetical protein complement(1340736..1341851) Helicobacter pylori HPAG1 4098444 YP_628038.1 CDS HPAG1_1297 NC_008086.1 1341914 1343293 R carboxyl-terminal protease complement(1341914..1343293) Helicobacter pylori HPAG1 4098445 YP_628039.1 CDS HPAG1_1298 NC_008086.1 1343505 1343732 R type II restriction endonuclease complement(1343505..1343732) Helicobacter pylori HPAG1 4098446 YP_628040.1 CDS HPAG1_1299 NC_008086.1 1343755 1344372 R hypothetical protein complement(1343755..1344372) Helicobacter pylori HPAG1 4098447 YP_628041.1 CDS HPAG1_1300 NC_008086.1 1344372 1345451 R adenine specific DNA methyltransferase complement(1344372..1345451) Helicobacter pylori HPAG1 4098448 YP_628042.1 CDS HPAG1_1301 NC_008086.1 1345571 1349176 R adenine specific DNA methyltransferase complement(1345571..1349176) Helicobacter pylori HPAG1 4098449 YP_628043.1 CDS HPAG1_1302 NC_008086.1 1349202 1350023 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(1349202..1350023) Helicobacter pylori HPAG1 4098450 YP_628044.1 CDS HPAG1_1303 NC_008086.1 1350023 1351033 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(1350023..1351033) Helicobacter pylori HPAG1 4098451 YP_628045.1 CDS HPAG1_1304 NC_008086.1 1351023 1351826 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1351023..1351826) Helicobacter pylori HPAG1 4098452 YP_628046.1 CDS HPAG1_1305 NC_008086.1 1351820 1352326 R hypothetical protein complement(1351820..1352326) Helicobacter pylori HPAG1 4098453 YP_628047.1 CDS HPAG1_1306 NC_008086.1 1352339 1352890 R hypothetical protein complement(1352339..1352890) Helicobacter pylori HPAG1 4098454 YP_628048.1 CDS ubiA NC_008086.1 1352826 1353710 R UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase complement(1352826..1353710) Helicobacter pylori HPAG1 4098455 YP_628049.1 CDS HPAG1_1308 NC_008086.1 1353739 1355052 R competence locus E complement(1353739..1355052) Helicobacter pylori HPAG1 4098456 YP_628050.1 CDS HPAG1_1309 NC_008086.1 1355049 1356515 R unwinds double stranded DNA; replicative DNA helicase complement(1355049..1356515) Helicobacter pylori HPAG1 4098457 YP_628051.1 CDS HPAG1_1310 NC_008086.1 1356526 1357920 R hypothetical protein complement(1356526..1357920) Helicobacter pylori HPAG1 4098458 YP_628052.1 CDS HPAG1_1311 NC_008086.1 1357923 1359041 R putative histidine kinase sensor protein complement(1357923..1359041) Helicobacter pylori HPAG1 4098459 YP_628053.1 CDS HPAG1_1312 NC_008086.1 1359091 1359732 R response regulator complement(1359091..1359732) Helicobacter pylori HPAG1 4098460 YP_628054.1 CDS HPAG1_1313 NC_008086.1 1359803 1361227 D type III restriction enzyme M protein 1359803..1361227 Helicobacter pylori HPAG1 4097997 YP_628055.1 CDS HPAG1_1314 NC_008086.1 1361166 1362269 D adenine-specific DNA methylase 1361166..1362269 Helicobacter pylori HPAG1 4097998 YP_628056.1 CDS HPAG1_1315 NC_008086.1 1362280 1364655 D type III restriction enzyme R protein 1362280..1364655 Helicobacter pylori HPAG1 4097999 YP_628057.1 CDS HPAG1_1316 NC_008086.1 1364755 1365189 D type III restriction enzyme R protein 1364755..1365189 Helicobacter pylori HPAG1 4098000 YP_628058.1 CDS HPAG1_1317 NC_008086.1 1365241 1365987 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(1365241..1365987) Helicobacter pylori HPAG1 4098001 YP_628059.1 CDS HPAG1_1318 NC_008086.1 1365991 1367034 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(1365991..1367034) Helicobacter pylori HPAG1 4098002 YP_628060.1 CDS clpX NC_008086.1 1367077 1368000 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(1367077..1368000) Helicobacter pylori HPAG1 4098003 YP_628061.1 CDS HPAG1_1320 NC_008086.1 1368012 1368422 R ATP-dependent protease ATPase subunit complement(1368012..1368422) Helicobacter pylori HPAG1 4098004 YP_628062.1 CDS HPAG1_1321 NC_008086.1 1368424 1369236 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(1368424..1369236) Helicobacter pylori HPAG1 4098005 YP_628063.1 CDS fabZ NC_008086.1 1369239 1369718 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(1369239..1369718) Helicobacter pylori HPAG1 4098006 YP_628064.2 CDS HPAG1_1323 NC_008086.1 1369900 1370289 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(1369900..1370289) Helicobacter pylori HPAG1 4098007 YP_628065.1 CDS HPAG1_1324 NC_008086.1 1370709 1371371 D competence lipoprotein 1370709..1371371 Helicobacter pylori HPAG1 4098008 YP_628066.1 CDS HPAG1_1325 NC_008086.1 1371413 1373917 D ATP-dependent protease 1371413..1373917 Helicobacter pylori HPAG1 4098009 YP_628067.1 CDS HPAG1_1326 NC_008086.1 1373914 1374753 D catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 1373914..1374753 Helicobacter pylori HPAG1 4098010 YP_628068.1 CDS HPAG1_1327 NC_008086.1 1374956 1375819 R putative endonuclease G complement(1374956..1375819) Helicobacter pylori HPAG1 4098011 YP_628069.1 CDS HPAG1_1328 NC_008086.1 1375931 1377640 R putative type III restriction enzyme M protein complement(1375931..1377640) Helicobacter pylori HPAG1 4098012 YP_628070.1 CDS HPAG1_1329 NC_008086.1 1377643 1380255 R putative type III restriction enzyme R protein complement(1377643..1380255) Helicobacter pylori HPAG1 4098013 YP_628071.1 CDS HPAG1_1330 NC_008086.1 1380386 1381234 D catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1380386..1381234 Helicobacter pylori HPAG1 4098014 YP_628072.1 CDS HPAG1_1331 NC_008086.1 1381234 1382112 D putative ribonuclease N 1381234..1382112 Helicobacter pylori HPAG1 4098015 YP_628073.1 CDS HPAG1_1332 NC_008086.1 1382139 1382348 R hypothetical protein complement(1382139..1382348) Helicobacter pylori HPAG1 4098016 YP_628074.1 CDS HPAG1_1333 NC_008086.1 1382436 1382618 R hypothetical protein complement(1382436..1382618) Helicobacter pylori HPAG1 4098128 YP_628075.1 CDS HPAG1_1334 NC_008086.1 1386644 1386910 D hypothetical protein 1386644..1386910 Helicobacter pylori HPAG1 4098131 YP_628076.1 CDS HPAG1_1335 NC_008086.1 1387305 1387745 D hypothetical protein 1387305..1387745 Helicobacter pylori HPAG1 4098132 YP_628077.1 CDS HPAG1_1336 NC_008086.1 1387792 1389624 D hypothetical protein 1387792..1389624 Helicobacter pylori HPAG1 4098133 YP_628078.1 CDS HPAG1_1337 NC_008086.1 1389775 1390020 D hypothetical protein 1389775..1390020 Helicobacter pylori HPAG1 4098134 YP_628079.1 CDS HPAG1_1338 NC_008086.1 1389968 1390684 D hypothetical protein 1389968..1390684 Helicobacter pylori HPAG1 4098135 YP_628080.1 CDS HPAG1_1339 NC_008086.1 1390802 1391248 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(1390802..1391248) Helicobacter pylori HPAG1 4098136 YP_628081.1 CDS HPAG1_1340 NC_008086.1 1391308 1391649 D hypothetical protein 1391308..1391649 Helicobacter pylori HPAG1 4098137 YP_628082.1 CDS miaA NC_008086.1 1391720 1392550 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1391720..1392550 Helicobacter pylori HPAG1 4098138 YP_628083.1 CDS HPAG1_1342 NC_008086.1 1392555 1393658 D lipopolysaccharide 1,2-glucosyltransferase 1392555..1393658 Helicobacter pylori HPAG1 4098139 YP_628084.1 CDS HPAG1_1343 NC_008086.1 1393668 1395293 D hypothetical protein 1393668..1395293 Helicobacter pylori HPAG1 4098140 YP_628085.1 CDS murB NC_008086.1 1395353 1396132 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1395353..1396132) Helicobacter pylori HPAG1 4098141 YP_628086.1 CDS fliQ NC_008086.1 1396136 1396402 R with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ complement(1396136..1396402) Helicobacter pylori HPAG1 4098142 YP_628087.1 CDS fliI NC_008086.1 1396413 1397717 R involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase complement(1396413..1397717) Helicobacter pylori HPAG1 4098143 YP_628088.1 CDS HPAG1_1347 NC_008086.1 1397718 1398632 R type IV secretion system ATPase complement(1397718..1398632) Helicobacter pylori HPAG1 4098144 YP_628089.1 CDS ileS NC_008086.1 1398649 1401411 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(1398649..1401411) Helicobacter pylori HPAG1 4098165 YP_628090.1 CDS HPAG1_1349 NC_008086.1 1401435 1401692 R hypothetical protein complement(1401435..1401692) Helicobacter pylori HPAG1 4098166 YP_628091.1 CDS HPAG1_1350 NC_008086.1 1401794 1402414 D hypothetical protein 1401794..1402414 Helicobacter pylori HPAG1 4098167 YP_628092.1 CDS HPAG1_1351 NC_008086.1 1402541 1403422 R hypothetical protein complement(1402541..1403422) Helicobacter pylori HPAG1 4098168 YP_628093.1 CDS HPAG1_1352 NC_008086.1 1403707 1403889 R histidine-rich metal binding polypeptide complement(1403707..1403889) Helicobacter pylori HPAG1 4098169 YP_628094.1 CDS HPAG1_1353 NC_008086.1 1404085 1405158 R 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N complement(1404085..1405158) Helicobacter pylori HPAG1 4098170 YP_628095.1 CDS HPAG1_1354 NC_008086.1 1405155 1406144 R polysialic acid capsule expression protein complement(1405155..1406144) Helicobacter pylori HPAG1 4098171 YP_628096.1 CDS HPAG1_1355 NC_008086.1 1406128 1408203 R ATP/GTP binding protein complement(1406128..1408203) Helicobacter pylori HPAG1 4098172 YP_628097.1 CDS ksgA NC_008086.1 1408241 1409056 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1408241..1409056) Helicobacter pylori HPAG1 4098173 YP_628098.1 CDS HPAG1_1357 NC_008086.1 1409310 1409522 D histidine and glutamine-rich metal binding protein 1409310..1409522 Helicobacter pylori HPAG1 4098174 YP_628099.1 CDS HPAG1_1358 NC_008086.1 1409851 1409943 D hypothetical protein 1409851..1409943 Helicobacter pylori HPAG1 4098175 YP_628100.1 CDS HPAG1_1359 NC_008086.1 1410157 1412718 R hypothetical protein complement(1410157..1412718) Helicobacter pylori HPAG1 4098176 YP_628101.1 CDS HPAG1_1360 NC_008086.1 1412719 1413600 R formyltetrahydrofolate hydrolase complement(1412719..1413600) Helicobacter pylori HPAG1 4098177 YP_628102.1 CDS HPAG1_1361 NC_008086.1 1413603 1414481 R signal peptide protease IV complement(1413603..1414481) Helicobacter pylori HPAG1 4098178 YP_628103.1 CDS HPAG1_1362 NC_008086.1 1414553 1414813 D hypothetical protein 1414553..1414813 Helicobacter pylori HPAG1 4098179 YP_628104.1 CDS HPAG1_1363 NC_008086.1 1415052 1415780 D hypothetical protein 1415052..1415780 Helicobacter pylori HPAG1 4098180 YP_628105.1 CDS HPAG1_1364 NC_008086.1 1415832 1416953 D lipoprotein 1415832..1416953 Helicobacter pylori HPAG1 4098181 YP_628106.1 CDS HPAG1_1365 NC_008086.1 1416979 1417404 D hypothetical protein 1416979..1417404 Helicobacter pylori HPAG1 4098182 YP_628107.1 CDS HPAG1_1366 NC_008086.1 1419927 1420712 R hypothetical protein complement(1419927..1420712) Helicobacter pylori HPAG1 4098037 YP_628108.1 CDS HPAG1_1367 NC_008086.1 1420827 1421318 D peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase 1420827..1421318 Helicobacter pylori HPAG1 4098038 YP_628109.1 CDS HPAG1_1368 NC_008086.1 1421337 1421567 D affects carbohydrate metabolism, has regulatory role in many processes; carbon storage regulator 1421337..1421567 Helicobacter pylori HPAG1 4098039 YP_628110.1 CDS HPAG1_1369 NC_008086.1 1421564 1422388 D catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1421564..1422388 Helicobacter pylori HPAG1 4098040 YP_628111.1 CDS smpB NC_008086.1 1422366 1422824 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1422366..1422824 Helicobacter pylori HPAG1 4098041 YP_628112.1 CDS HPAG1_1371 NC_008086.1 1422827 1423279 D biopolymer transport protein 1422827..1423279 Helicobacter pylori HPAG1 4098042 YP_628113.1 CDS HPAG1_1372 NC_008086.1 1423290 1423691 D biopolymer transport protein 1423290..1423691 Helicobacter pylori HPAG1 4098043 YP_628114.1 CDS rpmH NC_008086.1 1423763 1423897 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 1423763..1423897 Helicobacter pylori HPAG1 4098044 YP_628115.1 CDS HPAG1_1374 NC_008086.1 1423857 1424357 D ribonuclease P, protein component 1423857..1424357 Helicobacter pylori HPAG1 4098045 YP_628116.1 CDS HPAG1_1375 NC_008086.1 1424330 1424686 D hypothetical protein 1424330..1424686 Helicobacter pylori HPAG1 4098046 YP_628117.1 CDS HPAG1_1376 NC_008086.1 1424692 1426338 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 1424692..1426338 Helicobacter pylori HPAG1 4098047 YP_628118.1 CDS HPAG1_1377 NC_008086.1 1426338 1427144 D hypothetical protein 1426338..1427144 Helicobacter pylori HPAG1 4098048 YP_628119.1 CDS trmE NC_008086.1 1427104 1428489 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 1427104..1428489 Helicobacter pylori HPAG1 4098049 YP_628120.1 CDS HPAG1_1379 NC_008086.1 1428703 1430943 D outer membrane protein HomD 1428703..1430943 Helicobacter pylori HPAG1 4098050 YP_628121.1 CDS HPAG1_1380 NC_008086.1 1431072 1431218 R hypothetical protein complement(1431072..1431218) Helicobacter pylori HPAG1 4098051 YP_628122.1 CDS HPAG1_1381 NC_008086.1 1431375 1431626 D MobC-like protein 1431375..1431626 Helicobacter pylori HPAG1 4098052 YP_628123.1 CDS HPAG1_1382 NC_008086.1 1431707 1432237 D cagY like protein 1431707..1432237 Helicobacter pylori HPAG1 4098053 YP_628124.1 CDS thyX NC_008086.1 1432271 1432897 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(1432271..1432897) Helicobacter pylori HPAG1 4098054 YP_628125.1 CDS HPAG1_1384 NC_008086.1 1432919 1434712 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1432919..1434712) Helicobacter pylori HPAG1 4098055 YP_628126.1 CDS HPAG1_1385 NC_008086.1 1434713 1434952 R hypothetical protein complement(1434713..1434952) Helicobacter pylori HPAG1 4099079 YP_628127.1 CDS HPAG1_1386 NC_008086.1 1434995 1435537 R purine nucleoside phosphorylase complement(1434995..1435537) Helicobacter pylori HPAG1 4099080 YP_628128.1 CDS dnaA NC_008086.1 1435690 1437057 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1435690..1437057 Helicobacter pylori HPAG1 4099081 YP_628129.1 CDS HPAG1_1388 NC_008086.1 1437278 1438717 D hypothetical protein 1437278..1438717 Helicobacter pylori HPAG1 4099082 YP_628130.1 CDS HPAG1_1389 NC_008086.1 1438897 1439649 D AP endonuclease xth family; multifunctional DNA repair protein; has AP endonuclease, 3'-5' exonuclease, ribonuclease H, and 3'-phosphomonoesterase activities.; exodeoxyribonuclease III 1438897..1439649 Helicobacter pylori HPAG1 4099084 YP_628131.1 CDS HPAG1_1390 NC_008086.1 1439646 1440281 R hypothetical protein complement(1439646..1440281) Helicobacter pylori HPAG1 4099085 YP_628132.1 CDS HPAG1_1391 NC_008086.1 1440285 1440632 R hypothetical protein complement(1440285..1440632) Helicobacter pylori HPAG1 4099086 YP_628133.1 CDS HPAG1_1392 NC_008086.1 1440714 1442585 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1440714..1442585 Helicobacter pylori HPAG1 4099087 YP_628134.1 CDS HPAG1_1393 NC_008086.1 1442641 1444605 D type III R-M system modification enzyme 1442641..1444605 Helicobacter pylori HPAG1 4099088 YP_628135.1 CDS HPAG1_1394 NC_008086.1 1444608 1447508 D type III R-M system restriction enzyme 1444608..1447508 Helicobacter pylori HPAG1 4099089 YP_628136.1 CDS HPAG1_1395 NC_008086.1 1447627 1451385 D type IIS restriction-modification protein 1447627..1451385 Helicobacter pylori HPAG1 4099090 YP_628137.1 CDS HPAG1_1396 NC_008086.1 1451445 1451537 R hypothetical protein complement(1451445..1451537) Helicobacter pylori HPAG1 4099091 YP_628138.1 CDS HPAG1_1397 NC_008086.1 1451939 1452622 R hypothetical protein complement(1451939..1452622) Helicobacter pylori HPAG1 4099092 YP_628139.1 CDS nusA NC_008086.1 1452679 1453866 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1452679..1453866) Helicobacter pylori HPAG1 4099093 YP_628140.1 CDS HPAG1_1399 NC_008086.1 1453968 1455128 R catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase complement(1453968..1455128) Helicobacter pylori HPAG1 4099094 YP_628141.1 CDS HPAG1_1400 NC_008086.1 1455355 1457946 R iron-regulated outer membrane protein complement(1455355..1457946) Helicobacter pylori HPAG1 4099095 YP_628142.1 CDS HPAG1_1401 NC_008086.1 1458099 1458425 R hypothetical protein complement(1458099..1458425) Helicobacter pylori HPAG1 4099096 YP_628143.1 CDS HPAG1_1402 NC_008086.1 1458409 1458762 R dihydroneopterin aldolase complement(1458409..1458762) Helicobacter pylori HPAG1 4099097 YP_628144.1 CDS HPAG1_1403 NC_008086.1 1458759 1459547 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1458759..1459547) Helicobacter pylori HPAG1 4098481 YP_628145.1 CDS HPAG1_1404 NC_008086.1 1459527 1460903 D ferrodoxin-like protein 1459527..1460903 Helicobacter pylori HPAG1 4098480 YP_628146.1 CDS HPAG1_1405 NC_008086.1 1460913 1462112 R hypothetical protein complement(1460913..1462112) Helicobacter pylori HPAG1 4098482 YP_628147.1 CDS HPAG1_1406 NC_008086.1 1462198 1463424 D sodium/glutamate symport carrier protein/glutamate permease 1462198..1463424 Helicobacter pylori HPAG1 4098483 YP_628148.1 CDS HPAG1_1407 NC_008086.1 1463421 1464455 D riboflavin biosynthesis protein 1463421..1464455 Helicobacter pylori HPAG1 4098484 YP_628149.1 CDS HPAG1_1408 NC_008086.1 1464437 1465153 D hypothetical protein 1464437..1465153 Helicobacter pylori HPAG1 4098485 YP_628150.1 CDS HPAG1_1409 NC_008086.1 1465178 1467544 D putative cation transporting P-type ATPase 1465178..1467544 Helicobacter pylori HPAG1 4098486 YP_628151.1 CDS HPAG1_1410 NC_008086.1 1467541 1467978 R hypothetical protein complement(1467541..1467978) Helicobacter pylori HPAG1 4098487 YP_628152.1 CDS HPAG1_1411 NC_008086.1 1468158 1469324 D outer membrane protein HopK 1468158..1469324 Helicobacter pylori HPAG1 4098488 YP_628153.1 CDS HPAG1_1412 NC_008086.1 1469402 1470982 R restriction endonuclease complement(1469402..1470982) Helicobacter pylori HPAG1 4098489 YP_628154.1 CDS HPAG1_1413 NC_008086.1 1470989 1471888 R type II adenine specific DNA methyltransferase complement(1470989..1471888) Helicobacter pylori HPAG1 4098490 YP_628155.1 CDS HPAG1_1414 NC_008086.1 1471885 1472886 R type II methylase complement(1471885..1472886) Helicobacter pylori HPAG1 4098491 YP_628156.1 CDS HPAG1_1415 NC_008086.1 1472943 1474010 R hypothetical protein complement(1472943..1474010) Helicobacter pylori HPAG1 4098492 YP_628157.1 CDS HPAG1_1416 NC_008086.1 1474065 1474625 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1474065..1474625) Helicobacter pylori HPAG1 4098493 YP_628158.1 CDS HPAG1_1417 NC_008086.1 1474635 1475171 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(1474635..1475171) Helicobacter pylori HPAG1 4098494 YP_628159.1 CDS HPAG1_1418 NC_008086.1 1475226 1476176 R Important for the balance of metabolites in the pentose-phosphate pathway; transaldolase complement(1475226..1476176) Helicobacter pylori HPAG1 4098495 YP_628160.1 CDS murE NC_008086.1 1476180 1477523 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(1476180..1477523) Helicobacter pylori HPAG1 4098496 YP_628161.1 CDS HPAG1_1420 NC_008086.1 1477527 1478138 R hypothetical protein complement(1477527..1478138) Helicobacter pylori HPAG1 4098497 YP_628162.1 CDS HPAG1_1421 NC_008086.1 1478150 1478419 R NifU-like protein complement(1478150..1478419) Helicobacter pylori HPAG1 4098498 YP_628163.1 CDS HPAG1_1422 NC_008086.1 1478558 1480159 D phosphate permease 1478558..1480159 Helicobacter pylori HPAG1 4099117 YP_628164.1 CDS HPAG1_1423 NC_008086.1 1480267 1481604 D hemolysin domain-containing protein 1480267..1481604 Helicobacter pylori HPAG1 4099118 YP_628165.1 CDS HPAG1_1424 NC_008086.1 1481620 1483152 D lipase-like protein 1481620..1483152 Helicobacter pylori HPAG1 4099119 YP_628166.1 CDS HPAG1_1425 NC_008086.1 1483164 1484153 D hypothetical protein 1483164..1484153 Helicobacter pylori HPAG1 4099120 YP_628167.1 CDS HPAG1_1426 NC_008086.1 1484165 1485262 D hypothetical protein 1484165..1485262 Helicobacter pylori HPAG1 4099121 YP_628168.1 CDS HPAG1_1427 NC_008086.1 1485259 1486389 D hypothetical protein 1485259..1486389 Helicobacter pylori HPAG1 4099122 YP_628169.1 CDS HPAG1_1428 NC_008086.1 1486376 1486948 D hypothetical protein 1486376..1486948 Helicobacter pylori HPAG1 4099123 YP_628170.1 CDS HPAG1_1429 NC_008086.1 1486959 1487405 D hypothetical protein 1486959..1487405 Helicobacter pylori HPAG1 4099124 YP_628171.1 CDS ubiE NC_008086.1 1487432 1488163 D Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 1487432..1488163 Helicobacter pylori HPAG1 4099125 YP_628172.1 CDS HPAG1_1431 NC_008086.1 1488173 1488433 D catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 1488173..1488433 Helicobacter pylori HPAG1 4099126 YP_628173.1 CDS HPAG1_1432 NC_008086.1 1488437 1489234 D hypothetical protein 1488437..1489234 Helicobacter pylori HPAG1 4099127 YP_628174.1 CDS HPAG1_1433 NC_008086.1 1489235 1490482 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1489235..1490482 Helicobacter pylori HPAG1 4099128 YP_628175.1 CDS HPAG1_1434 NC_008086.1 1490492 1493026 D hypothetical protein 1490492..1493026 Helicobacter pylori HPAG1 4099129 YP_628176.1 CDS HPAG1_1435 NC_008086.1 1493023 1495071 D DNA helicase II 1493023..1495071 Helicobacter pylori HPAG1 4099130 YP_628177.1 CDS flgA NC_008086.1 1495068 1495724 D required for the assembly of the flagellar basal body P-ring; flagellar basal body P-ring biosynthesis protein FlgA 1495068..1495724 Helicobacter pylori HPAG1 4099131 YP_628178.1 CDS HPAG1_1437 NC_008086.1 1495734 1496297 D catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1495734..1496297 Helicobacter pylori HPAG1 4099132 YP_628179.1 CDS coaD NC_008086.1 1496297 1496770 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1496297..1496770 Helicobacter pylori HPAG1 4099133 YP_628180.1 CDS tmk NC_008086.1 1496772 1497347 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1496772..1497347 Helicobacter pylori HPAG1 4099134 YP_628181.1 CDS HPAG1_1440 NC_008086.1 1497335 1497910 D hypothetical protein 1497335..1497910 Helicobacter pylori HPAG1 4099135 YP_628182.1 CDS HPAG1_1441 NC_008086.1 1497943 1499154 D restriction enzyme BcgI alpha chain-like protein 1497943..1499154 Helicobacter pylori HPAG1 4099136 YP_628183.1 CDS HPAG1_1442 NC_008086.1 1499138 1499542 D restriction enzyme BcgI alpha chain-like protein 1499138..1499542 Helicobacter pylori HPAG1 4098614 YP_628184.1 CDS HPAG1_1443 NC_008086.1 1499554 1499982 D restriction enzyme BcgI alpha chain-like protein 1499554..1499982 Helicobacter pylori HPAG1 4098615 YP_628185.1 CDS HPAG1_1444 NC_008086.1 1499979 1501190 D type II restriction enzyme 1499979..1501190 Helicobacter pylori HPAG1 4098616 YP_628186.1 CDS HPAG1_1445 NC_008086.1 1501256 1503955 D DNA polymerase I 1501256..1503955 Helicobacter pylori HPAG1 4098617 YP_628187.1 CDS HPAG1_1446 NC_008086.1 1504070 1504816 D outer membrane protein HorJ 1504070..1504816 Helicobacter pylori HPAG1 4098618 YP_628188.1 CDS HPAG1_1447 NC_008086.1 1504869 1505891 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1504869..1505891 Helicobacter pylori HPAG1 4098619 YP_628189.1 CDS HPAG1_1448 NC_008086.1 1505896 1506591 R outer membrane protein complement(1505896..1506591) Helicobacter pylori HPAG1 4098620 YP_628190.1 CDS HPAG1_1449 NC_008086.1 1506725 1507858 D hypothetical protein 1506725..1507858 Helicobacter pylori HPAG1 4098621 YP_628191.1 CDS HPAG1_1450 NC_008086.1 1507858 1508643 D ABC transporter ATP-binding protein 1507858..1508643 Helicobacter pylori HPAG1 4098622 YP_628192.1 CDS HPAG1_1451 NC_008086.1 1508628 1509443 D ABC transport system substrate binding protein 1508628..1509443 Helicobacter pylori HPAG1 4098623 YP_628193.1 CDS HPAG1_1452 NC_008086.1 1509446 1510123 D hypothetical protein 1509446..1510123 Helicobacter pylori HPAG1 4098624 YP_628194.1 CDS HPAG1_1453 NC_008086.1 1510135 1510722 D putative secreted motility protein 1510135..1510722 Helicobacter pylori HPAG1 4098625 YP_628195.1 CDS HPAG1_1454 NC_008086.1 1511017 1512069 R cytochrome c551 peroxidase complement(1511017..1512069) Helicobacter pylori HPAG1 4098626 YP_628196.1 CDS dnaE NC_008086.1 1512217 1515852 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1512217..1515852 Helicobacter pylori HPAG1 4098627 YP_628197.1 CDS HPAG1_1456 NC_008086.1 1515834 1516622 D hypothetical protein 1515834..1516622 Helicobacter pylori HPAG1 4098628 YP_628198.1 CDS HPAG1_1457 NC_008086.1 1516678 1516992 D thioredoxin 1516678..1516992 Helicobacter pylori HPAG1 4098629 YP_628199.1 CDS HPAG1_1458 NC_008086.1 1517355 1517987 D hypothetical protein 1517355..1517987 Helicobacter pylori HPAG1 4098630 YP_628200.1 CDS HPAG1_1459 NC_008086.1 1518011 1518538 D membrane-associated lipoprotein 1518011..1518538 Helicobacter pylori HPAG1 4098631 YP_628201.1 CDS HPAG1_1460 NC_008086.1 1518546 1518887 D hypothetical protein 1518546..1518887 Helicobacter pylori HPAG1 4098632 YP_628202.1 CDS HPAG1_1461 NC_008086.1 1518896 1519807 D hypothetical protein 1518896..1519807 Helicobacter pylori HPAG1 4098653 YP_628203.1 CDS HPAG1_1462 NC_008086.1 1520168 1521295 R type I R-M system specificity subunit complement(1520168..1521295) Helicobacter pylori HPAG1 4098654 YP_628204.1 CDS HPAG1_1463 NC_008086.1 1521283 1522059 R hypothetical protein complement(1521283..1522059) Helicobacter pylori HPAG1 4098655 YP_628205.1 CDS HPAG1_1464 NC_008086.1 1522146 1524158 R type I restriction enzyme M protein complement(1522146..1524158) Helicobacter pylori HPAG1 4098656 YP_628206.1 CDS HPAG1_1465 NC_008086.1 1524194 1524604 R type I restriction enzyme M protein complement(1524194..1524604) Helicobacter pylori HPAG1 4098657 YP_628207.1 CDS HPAG1_1466 NC_008086.1 1524671 1527649 D type I restriction enzyme R protein 1524671..1527649 Helicobacter pylori HPAG1 4098658 YP_628208.1 CDS HPAG1_1467 NC_008086.1 1527649 1527879 D hypothetical protein 1527649..1527879 Helicobacter pylori HPAG1 4098659 YP_628209.1 CDS HPAG1_1468 NC_008086.1 1527816 1528355 D hypothetical protein 1527816..1528355 Helicobacter pylori HPAG1 4098660 YP_628210.1 CDS HPAG1_1469 NC_008086.1 1528454 1530982 R iron(III) dicitrate transport protein complement(1528454..1530982) Helicobacter pylori HPAG1 4098661 YP_628211.1 CDS HPAG1_1470 NC_008086.1 1531330 1532298 R arginase complement(1531330..1532298) Helicobacter pylori HPAG1 4098662 YP_628212.1 CDS HPAG1_1471 NC_008086.1 1532311 1533738 R amino acid permease complement(1532311..1533738) Helicobacter pylori HPAG1 4098663 YP_628213.1 CDS HPAG1_1472 NC_008086.1 1533938 1535080 D alanine dehydrogenase 1533938..1535080 Helicobacter pylori HPAG1 4098664 YP_628214.1 CDS HPAG1_1473 NC_008086.1 1535201 1536754 D hypothetical protein 1535201..1536754 Helicobacter pylori HPAG1 4098665 YP_628215.1 CDS HPAG1_1474 NC_008086.1 1536738 1536926 D hypothetical protein 1536738..1536926 Helicobacter pylori HPAG1 4098666 YP_628216.1 CDS HPAG1_1475 NC_008086.1 1536937 1537665 R outer membrane protein HorL complement(1536937..1537665) Helicobacter pylori HPAG1 4098667 YP_628217.1 CDS HPAG1_1476 NC_008086.1 1537852 1538706 D hypothetical protein 1537852..1538706 Helicobacter pylori HPAG1 4098668 YP_628218.1 CDS HPAG1_1477 NC_008086.1 1538719 1540293 D DNA repair protein 1538719..1540293 Helicobacter pylori HPAG1 4098669 YP_628219.1 CDS HPAG1_1478 NC_008086.1 1540290 1541597 D fibronectin/fibrinogen-binding protein 1540290..1541597 Helicobacter pylori HPAG1 4098670 YP_628220.1 CDS HPAG1_1479 NC_008086.1 1541617 1541913 D hypothetical protein 1541617..1541913 Helicobacter pylori HPAG1 4098671 YP_628221.1 CDS HPAG1_1480 NC_008086.1 1542044 1542400 D hypothetical protein 1542044..1542400 Helicobacter pylori HPAG1 4098672 YP_628222.1 CDS HPAG1_1481 NC_008086.1 1542646 1543617 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(1542646..1543617) Helicobacter pylori HPAG1 4098556 YP_628223.1 CDS HPAG1_1482 NC_008086.1 1543487 1544140 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(1543487..1544140) Helicobacter pylori HPAG1 4098557 YP_628224.1 CDS HPAG1_1483 NC_008086.1 1544211 1545083 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1544211..1545083 Helicobacter pylori HPAG1 4098558 YP_628225.1 CDS HPAG1_1484 NC_008086.1 1545080 1545286 D hypothetical protein 1545080..1545286 Helicobacter pylori HPAG1 4098559 YP_628226.1 CDS HPAG1_1485 NC_008086.1 1545299 1546195 D putative type II methylase protein 1545299..1546195 Helicobacter pylori HPAG1 4098560 YP_628227.1 CDS HPAG1_1486 NC_008086.1 1546188 1546919 D hypothetical protein 1546188..1546919 Helicobacter pylori HPAG1 4098561 YP_628228.1 CDS HPAG1_1487 NC_008086.1 1547040 1547897 R ubiquinol cytochrome c oxidoreductase, cytochrome c1 complement(1547040..1547897) Helicobacter pylori HPAG1 4098562 YP_628229.1 CDS HPAG1_1488 NC_008086.1 1547894 1549132 R ubiquinol cytochrome c oxidoreductase, cytochrome b subunit complement(1547894..1549132) Helicobacter pylori HPAG1 4098563 YP_628230.1 CDS HPAG1_1489 NC_008086.1 1549143 1549646 R ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit complement(1549143..1549646) Helicobacter pylori HPAG1 4098564 YP_628231.1 CDS HPAG1_1490 NC_008086.1 1549770 1552769 R transcription-repair coupling factor complement(1549770..1552769) Helicobacter pylori HPAG1 4098565 YP_628232.1 CDS HPAG1_1491 NC_008086.1 1552773 1553183 R hypothetical protein complement(1552773..1553183) Helicobacter pylori HPAG1 4098566 YP_628233.1 CDS HPAG1_1492 NC_008086.1 1553102 1554037 R toxR-activated gene complement(1553102..1554037) Helicobacter pylori HPAG1 4098567 YP_628234.1 CDS HPAG1_1493 NC_008086.1 1554046 1554972 R toxR-activated gene complement(1554046..1554972) Helicobacter pylori HPAG1 4098568 YP_628235.1 CDS HPAG1_1494 NC_008086.1 1554972 1556141 R folylpolyglutamate synthase complement(1554972..1556141) Helicobacter pylori HPAG1 4098569 YP_628236.1 CDS HPAG1_1495 NC_008086.1 1556131 1556643 R hypothetical protein complement(1556131..1556643) Helicobacter pylori HPAG1 4098570 YP_628237.1 CDS leuS NC_008086.1 1556640 1559060 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(1556640..1559060) Helicobacter pylori HPAG1 4098571 YP_628238.1 CDS HPAG1_1497 NC_008086.1 1559071 1559409 R hypothetical protein complement(1559071..1559409) Helicobacter pylori HPAG1 4098572 YP_628239.1 CDS secF NC_008086.1 1559419 1560390 R forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF complement(1559419..1560390) Helicobacter pylori HPAG1 4098573 YP_628240.1 CDS secD NC_008086.1 1560399 1561976 R part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD complement(1560399..1561976) Helicobacter pylori HPAG1 4098574 YP_628241.1 CDS yajC NC_008086.1 1561977 1562270 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(1561977..1562270) Helicobacter pylori HPAG1 4098575 YP_628242.1 CDS nhaA NC_008086.1 1562318 1563634 R exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter complement(1562318..1563634) Helicobacter pylori HPAG1 4098576 YP_628243.1 CDS HPAG1_1502 NC_008086.1 1563658 1566519 R putative recombination protein RecB complement(1563658..1566519) Helicobacter pylori HPAG1 4098577 YP_628244.1 CDS rpsB NC_008086.1 1566769 1567563 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1566769..1567563 Helicobacter pylori HPAG1 4098578 YP_628245.1 CDS tsf NC_008086.1 1567563 1568630 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1567563..1568630 Helicobacter pylori HPAG1 4098579 YP_628246.1 CDS HPAG1_1505 NC_008086.1 1569074 1570921 R cell division protein complement(1569074..1570921) Helicobacter pylori HPAG1 4098580 YP_628247.1 CDS fliE NC_008086.1 1571077 1571406 R forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE complement(1571077..1571406) Helicobacter pylori HPAG1 4098581 YP_628248.1 CDS flgC NC_008086.1 1571534 1572019 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(1571534..1572019) Helicobacter pylori HPAG1 4098582 YP_628249.1 CDS flgB NC_008086.1 1572033 1572455 R with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB complement(1572033..1572455) Helicobacter pylori HPAG1 4098583 YP_628250.1 CDS HPAG1_1509 NC_008086.1 1572660 1573826 D cell division protein 1572660..1573826 Helicobacter pylori HPAG1 4098584 YP_628251.1 CDS HPAG1_1510 NC_008086.1 1573851 1574858 R iron(III) ABC transporter, periplasmic iron-binding protein complement(1573851..1574858) Helicobacter pylori HPAG1 4098585 YP_628252.1 CDS HPAG1_1511 NC_008086.1 1575057 1576052 R iron(III) ABC transporter, periplasmic iron-binding protein complement(1575057..1576052) Helicobacter pylori HPAG1 4098586 YP_628253.1 CDS HPAG1_1512 NC_008086.1 1576297 1576893 D alkyl hydroperoxide reductase 1576297..1576893 Helicobacter pylori HPAG1 4098587 YP_628254.1 CDS HPAG1_1513 NC_008086.1 1577041 1577856 D putative outer membrane lipoprotein 1577041..1577856 Helicobacter pylori HPAG1 4098588 YP_628255.1 CDS HPAG1_1514 NC_008086.1 1578564 1580330 R penicillin-binding protein 2 complement(1578564..1580330) Helicobacter pylori HPAG1 4098589 YP_628256.1 CDS HPAG1_1515 NC_008086.1 1580311 1580754 R hypothetical protein complement(1580311..1580754) Helicobacter pylori HPAG1 4098590 YP_628257.1 CDS engB NC_008086.1 1580767 1581393 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(1580767..1581393) Helicobacter pylori HPAG1 4098591 YP_628258.1 CDS HPAG1_1517 NC_008086.1 1581390 1581947 R hypothetical protein complement(1581390..1581947) Helicobacter pylori HPAG1 4098592 YP_628259.1 CDS HPAG1_1518 NC_008086.1 1581947 1582540 R hypothetical protein complement(1581947..1582540) Helicobacter pylori HPAG1 4098593 YP_628260.1 CDS HPAG1_1519 NC_008086.1 1582515 1583009 R hypothetical protein complement(1582515..1583009) Helicobacter pylori HPAG1 4098594 YP_628261.1 CDS HPAG1_1520 NC_008086.1 1583006 1583950 R rare lipoprotein A complement(1583006..1583950) Helicobacter pylori HPAG1 4098392 YP_628262.1 CDS HPAG1_1521 NC_008086.1 1583950 1585062 R regulatory protein DniR complement(1583950..1585062) Helicobacter pylori HPAG1 4098393 YP_628263.1 CDS HPAG1_1522 NC_008086.1 1585151 1585915 R hypothetical protein complement(1585151..1585915) Helicobacter pylori HPAG1 4098394 YP_628264.1 CDS HPAG1_1523 NC_008086.1 1585990 1586610 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1585990..1586610 Helicobacter pylori HPAG1 4098395 YP_628265.1 CDS HPAG1_1524 NC_008086.1 1586611 1586883 D FlhB-related flagellar biosynthesis protein 1586611..1586883 Helicobacter pylori HPAG1 4098396 YP_628266.1 CDS metN NC_008086.1 1586905 1587888 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1586905..1587888 Helicobacter pylori HPAG1 4098397 YP_628267.1 CDS HPAG1_1526 NC_008086.1 1587890 1588537 D ABC transporter, permease protein 1587890..1588537 Helicobacter pylori HPAG1 4098398 YP_628268.1 CDS HPAG1_1527 NC_008086.1 1588724 1589155 R hypothetical protein complement(1588724..1589155) Helicobacter pylori HPAG1 4098399 YP_628269.1 CDS HPAG1_1528 NC_008086.1 1589165 1589827 R hypothetical protein complement(1589165..1589827) Helicobacter pylori HPAG1 4098400 YP_628270.1 CDS HPAG1_1529 NC_008086.1 1589761 1590768 R undecaprenyl phosphate N-acetylglucosaminyltransferase complement(1589761..1590768) Helicobacter pylori HPAG1 4098401 YP_628271.1 CDS HPAG1_1530 NC_008086.1 1590895 1591683 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1590895..1591683 Helicobacter pylori HPAG1 4098402 YP_628272.1 CDS pdxA NC_008086.1 1591685 1592608 D catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1591685..1592608 Helicobacter pylori HPAG1 4098403 YP_628273.1 CDS HPAG1_1532 NC_008086.1 1592673 1593695 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1592673..1593695 Helicobacter pylori HPAG1 4098404 YP_628274.1 CDS flgG NC_008086.1 1594510 1595298 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1594510..1595298 Helicobacter pylori HPAG1 4098405 YP_628275.1 CDS HPAG1_1534 NC_008086.1 1595317 1595508 R hypothetical protein complement(1595317..1595508) Helicobacter pylori HPAG1 4098406 YP_628276.1 CDS HPAG1_1535 NC_008086.1 1595565 1596290 R hypothetical protein complement(1595565..1596290) Helicobacter pylori HPAG1 4098407 YP_628277.1 CDS HPAG1_p001 NC_008087.1 433 2064 D replication initiation protein A 433..2064 Helicobacter pylori HPAG1 4099442 YP_628278.1 CDS HPAG1_p002 NC_008087.1 2077 2784 D hypothetical protein 2077..2784 Helicobacter pylori HPAG1 4099443 YP_628279.1 CDS HPAG1_p003 NC_008087.1 3828 5345 D replication initiation protein A 3828..5345 Helicobacter pylori HPAG1 4099444 YP_628280.1 CDS HPAG1_p004 NC_008087.1 5438 7420 R hypothetical protein complement(5438..7420) Helicobacter pylori HPAG1 4099445 YP_628281.1 CDS HPAG1_p005 NC_008087.1 7410 7754 R MobC-like protein complement(7410..7754) Helicobacter pylori HPAG1 4099446 YP_628282.1 CDS HPAG1_p006 NC_008087.1 7950 8228 D hypothetical protein 7950..8228 Helicobacter pylori HPAG1 4099447 YP_628283.1 CDS HPAG1_p007 NC_008087.1 8215 8364 D hypothetical protein 8215..8364 Helicobacter pylori HPAG1 4099448 YP_628284.1 CDS HPAG1_p008 NC_008087.1 8332 8436 R hypothetical protein complement(8332..8436) Helicobacter pylori HPAG1 4099449 HPAG1_t001 tRNA HPAG1_t001 NC_008086.1 5560 5635 R tRNA-Glu complement(5560..5635) Helicobacter pylori HPAG1 4099137 HPAG1_t002 tRNA HPAG1_t002 NC_008086.1 5708 5784 R tRNA-Asp complement(5708..5784) Helicobacter pylori HPAG1 4099138 HPAG1_t003 tRNA HPAG1_t003 NC_008086.1 5825 5900 R tRNA-Val complement(5825..5900) Helicobacter pylori HPAG1 4099139 HPAG1_t004 tRNA HPAG1_t004 NC_008086.1 5942 6016 R tRNA-Glu complement(5942..6016) Helicobacter pylori HPAG1 4099140 HPAG1_t005 tRNA HPAG1_t005 NC_008086.1 6027 6102 R tRNA-Lys complement(6027..6102) Helicobacter pylori HPAG1 4099142 HPAG1_t006 tRNA HPAG1_t006 NC_008086.1 75884 75959 R tRNA-Val complement(75884..75959) Helicobacter pylori HPAG1 4099023 HPAG1_t007 tRNA HPAG1_t007 NC_008086.1 94431 94522 D tRNA-Ser 94431..94522 Helicobacter pylori HPAG1 4099184 HPAG1_t008 tRNA HPAG1_t008 NC_008086.1 235927 236001 R tRNA-Asn complement(235927..236001) Helicobacter pylori HPAG1 4097965 HPAG1_t009 tRNA HPAG1_t009 NC_008086.1 258930 259005 R tRNA-Ala complement(258930..259005) Helicobacter pylori HPAG1 4098919 HPAG1_t010 tRNA HPAG1_t010 NC_008086.1 344781 344857 D tRNA-Arg 344781..344857 Helicobacter pylori HPAG1 4098533 HPAG1_t011 tRNA HPAG1_t011 NC_008086.1 394068 394155 R tRNA-Ser complement(394068..394155) Helicobacter pylori HPAG1 4098932 HPAG1_t012 tRNA HPAG1_t012 NC_008086.1 446948 447025 R tRNA-Pro complement(446948..447025) Helicobacter pylori HPAG1 4099325 HPAG1_t013 tRNA HPAG1_t013 NC_008086.1 765016 765092 R tRNA-Met complement(765016..765092) Helicobacter pylori HPAG1 4098814 HPAG1_t014 tRNA HPAG1_t014 NC_008086.1 855981 856057 D tRNA-Arg 855981..856057 Helicobacter pylori HPAG1 4098187 HPAG1_t015 tRNA HPAG1_t015 NC_008086.1 916240 916316 R tRNA-Met complement(916240..916316) Helicobacter pylori HPAG1 4099388 HPAG1_t016 tRNA HPAG1_t016 NC_008086.1 916339 916413 R tRNA-Gln complement(916339..916413) Helicobacter pylori HPAG1 4099390 HPAG1_t017 tRNA HPAG1_t017 NC_008086.1 971830 971904 D tRNA-Gly 971830..971904 Helicobacter pylori HPAG1 4098555 HPAG1_t018 tRNA HPAG1_t018 NC_008086.1 972300 972386 D tRNA-Leu 972300..972386 Helicobacter pylori HPAG1 4097945 HPAG1_t019 tRNA HPAG1_t019 NC_008086.1 972460 972534 D tRNA-Cys 972460..972534 Helicobacter pylori HPAG1 4097946 HPAG1_t020 tRNA HPAG1_t020 NC_008086.1 972582 972669 D tRNA-Ser 972582..972669 Helicobacter pylori HPAG1 4097947 HPAG1_t021 tRNA HPAG1_t021 NC_008086.1 1032503 1032579 R tRNA-Arg complement(1032503..1032579) Helicobacter pylori HPAG1 4098081 HPAG1_t022 tRNA HPAG1_t022 NC_008086.1 1032597 1032673 R tRNA-Arg complement(1032597..1032673) Helicobacter pylori HPAG1 4098082 HPAG1_t023 tRNA HPAG1_t023 NC_008086.1 1032734 1032810 R tRNA-His complement(1032734..1032810) Helicobacter pylori HPAG1 4098083 HPAG1_t024 tRNA HPAG1_t024 NC_008086.1 1032874 1032951 R tRNA-Pro complement(1032874..1032951) Helicobacter pylori HPAG1 4098084 HPAG1_t025 tRNA HPAG1_t025 NC_008086.1 1082829 1082913 R tRNA-Leu complement(1082829..1082913) Helicobacter pylori HPAG1 4098321 HPAG1_t026 tRNA HPAG1_t026 NC_008086.1 1087696 1087772 D tRNA-Ile 1087696..1087772 Helicobacter pylori HPAG1 4098327 HPAG1_t027 tRNA HPAG1_t027 NC_008086.1 1087788 1087863 D tRNA-Ala 1087788..1087863 Helicobacter pylori HPAG1 4098328 HPAG1_t028 tRNA HPAG1_t028 NC_008086.1 1180121 1180198 R tRNA-Met complement(1180121..1180198) Helicobacter pylori HPAG1 4098265 HPAG1_t029 tRNA HPAG1_t029 NC_008086.1 1211312 1211387 R tRNA-Trp complement(1211312..1211387) Helicobacter pylori HPAG1 4098436 HPAG1_t030 tRNA HPAG1_t030 NC_008086.1 1212944 1213018 R tRNA-Thr complement(1212944..1213018) Helicobacter pylori HPAG1 4098440 HPAG1_t031 tRNA HPAG1_t031 NC_008086.1 1213049 1213125 R tRNA-Gly complement(1213049..1213125) Helicobacter pylori HPAG1 4098441 HPAG1_t032 tRNA HPAG1_t032 NC_008086.1 1213141 1213225 R tRNA-Tyr complement(1213141..1213225) Helicobacter pylori HPAG1 4099170 HPAG1_t033 tRNA HPAG1_t033 NC_008086.1 1213253 1213328 R tRNA-Thr complement(1213253..1213328) Helicobacter pylori HPAG1 4099171 HPAG1_t034 tRNA HPAG1_t034 NC_008086.1 1218607 1218693 R tRNA-Leu complement(1218607..1218693) Helicobacter pylori HPAG1 4099178 HPAG1_t035 tRNA HPAG1_t035 NC_008086.1 1218747 1218833 R tRNA-Leu complement(1218747..1218833) Helicobacter pylori HPAG1 4099179 HPAG1_t036 tRNA HPAG1_t036 NC_008086.1 1438720 1438795 R tRNA-Phe complement(1438720..1438795) Helicobacter pylori HPAG1 4099083 HPAG1_r01 rRNA HPAG1_r01 NC_008086.1 1013338 1013472 R 5S Ribosomal RNA complement(1013338..1013472) Helicobacter pylori HPAG1 4098414 HPAG1_r02 rRNA HPAG1_r02 NC_008086.1 1013702 1016670 R 23S Ribosomal RNA complement(1013702..1016670) Helicobacter pylori HPAG1 4098415 HPAG1_r03 rRNA HPAG1_r03 NC_008086.1 1138506 1140006 R 16S Ribosomal RNA complement(1138506..1140006) Helicobacter pylori HPAG1 4097984 HPAG1_r04 rRNA HPAG1_r04 NC_008086.1 1382642 1382776 R 5S Ribosomal RNA complement(1382642..1382776) Helicobacter pylori HPAG1 4098129 HPAG1_r05 rRNA HPAG1_r05 NC_008086.1 1383006 1385974 R 23S Ribosomal RNA complement(1383006..1385974) Helicobacter pylori HPAG1 4098130 HPAG1_r06 rRNA HPAG1_r06 NC_008086.1 1417928 1419428 R 16S Ribosomal RNA complement(1417928..1419428) Helicobacter pylori HPAG1 4098183