-- dump date   	20140619_112935
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003728022.1	[KO:K02313]
YP_003728024.1	[KO:K01142], synonyms: LexA, exonuclease III
YP_003728027.1	[KO:K03655], synonyms: DNA recombinase
YP_003728028.1	Type III restriction-modification system EcoP15I enzyme mod (EcoP15I methyltransferase) (M.EcoP15I), DNA methylase N-4/N-6, DNA methylase
YP_003728029.1	Type III restriction-modification system EcoPI enzyme mod (EcoPI methyltransferase) (M.EcoPI)
YP_003728030.1	[KO:K01156]
YP_003728031.1	Uncharacterized adenine-specific methylase MJECS02, Restriction endonuclease, Eco57I
YP_003728032.1	[KO:K00571] [GO:9007], Modification methylase PaeR7I (Adenine-specific methyltransferase PaeR7I) (M.PaeR7I)
YP_003728033.1	annotated as Uncharacterized phage-associated protein in H. pylori Shi470
YP_003728035.1	[KO:K02600], annotated as transcription elongation factor NusA in H. pylori 26695, synonyms: transcriptional complex disassembly, transcriptional termination factor
YP_003728036.1	[KO:K01042], synonyms: selenocysteine synthase, Sec synthase, selenocysteinyl-tRNA(Sec) synthase
YP_003728038.1	[KO:K02014] [TC:1.B.14], annotated as iron-regulated outer membrane protein in H. pylori 26695, synonyms: ABC.FEV.OM
YP_003728040.1	[KO:K01633], synonyms: 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7, 8-dihydropteridine glycolaldehyde-lyase (2-amino-4-hydroxy-6-hydroxymethyl-7, 8-dihydropteridine-forming), 2-amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7, 8-dihydropteridine glycolaldehyde-lyase
YP_003728041.1	[KO:K08591], annotated as putative glycerol-3-phosphate acyltransferase PlsY in H. pylori 26695, synonyms: UPF0078
YP_003728042.1	annotated as ferredoxin-like protein in H. pylori 26695
YP_003728043.1	[KO:K00290]
YP_003728044.1	[KO:K03312] [TC:2.A.27], synonyms: glutamate permease, TC.ESS
YP_003728045.1	1.1.1.193] [KO:K00082 K01498], synonyms: 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate deaminase, 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 2-aminohydrolase, 5-amino-6-(5'-phosphoribosylamino)uracil reductase, 5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase, aminodioxyphosphoribosylaminopyrimidine reductase
YP_003728047.1	annotated as putative component of cation transport for cbb3-type oxidase in H. pylori J99 and as cation-transporting ATPase, P-type in H. pylori 26695
YP_003728048.1	[KO:K09943]
YP_003728049.1	annotated as omp32 in H. pylori 26695
YP_003728051.1	[KO:K06223] [], synonyms: adenine-specific DNA methyltransferase, N-6 adenine-specific DNA methylase
YP_003728053.1	[KO:K07091]
YP_003728054.1	[KO:K01056], synonyms: PTH, PTH1, spoVC, aminoacyl-transfer ribonucleate hydrolase, aminoacyl-tRNA aminoacylhydrolase, aminoacyl-tRNA hydrolase, N-substituted aminoacyl transfer RNA hydrolase, peptidyl-tRNA hydrolase
YP_003728055.1	[KO:K02897], synonyms: RP-L25, ctc, 50S ribosomal protein L25/general stress protein Ctc
YP_003728056.1	[KO:K00616], synonyms: talA, talB, dihydroxyacetone transferase, dihydroxyacetonetransferase, glycerone transferase, sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase
YP_003728057.1	[KO:K01928], synonyms: UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase, Meso-diaminopimelate-adding enzyme, Meso-A2pm-adding enzyme, UDP-N-acetylmuramyl-tripeptide synthetase, UDP-MurNAc-tripeptide synthetase, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:(L)-meso-2, 6-diaminoheptanedioate gamma-ligase (ADP-forming), UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2, 6-diamino-heptanedioate ligase (ADP-forming), UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2, 6-diaminopimelate synthetase, UDP-N-acetylmuramyl-tripeptide synthetase
YP_003728059.1	[KO:K07400], synonyms: NifU-like protein
YP_003728060.1	[KO:K03306] [TC:2.A.20], annotated as phosphate permease in H. pylori 26695, synonyms: TC.PIT
YP_003728062.1	annotated as Lipase-like protein in H. pylori 26695
YP_003728063.1	[KO:K01993 K02005], annotated as 36 kDa antigen in H. pylori 26695, synonyms: ABC-2.TX, ABC.CD.TX
YP_003728064.1	[KO:K09686] [TC:3.A.1], synonyms: ABC-2.AB.P, previously: [KO:K01992]
YP_003728065.1	[KO:K01992] [TC:3.A.1], synonyms: ABC-2.AB.P
YP_003728067.1	[KO:K08973], synonyms: UPF0093 membrane protein
YP_003728068.1	[KO:K03183], synonyms: gerC2, coenzyme Q biosynthesis methyltransferase, coenzyme Q biosynthetic process methyltransferase
YP_003728069.1	[KO:K03602], synonyms: exodeoxyribonuclease 7 small subunit, exonuclease VII small subunit
YP_003728071.1	[KO:K01875], synonyms: seryl-tRNA(Ser/Sec) synthetase, Serine-tRNA ligase, SerRS
YP_003728073.1	[KO:K03657]
YP_003728074.1	[KO:K02386]
YP_003728075.1	[KO:K03186]
YP_003728076.1	[KO:K00954], synonyms: phosphopantetheine adenylyltransferase, kdtB, 3'-dephospho-CoA pyrophosphorylase, ATP:pantetheine-4'-phosphate adenylyltransferase, dephospho-CoA diphosphorylase, dephospho-coenzyme A pyrophosphorylase, PPAT, phosphopantetheine adenylyltransferase
YP_003728077.1	[KO:K00943], synonyms: thymidylate kinase, ATP:dTMP phosphotransferase, deoxythymidine 5'-monophosphate kinase, thymidine 5'-monophosphate kinase, thymidylate monophosphate kinase, TMPK
YP_003728078.1	[KO:K02242]
YP_003728080.1	like BCGIB; type IIS restriction enzyme R protein
YP_003728081.1	Restriction enzyme BgcI subunit beta (S.BcgI) like
YP_003728082.1	[KO:K02335], synonyms: DPO1, POL I, deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed), deoxyribonucleic acid duplicase, DNA nucleotidyltransferase (DNA-directed), DNA-dependent DNA polymerase
YP_003728083.1	annotated as outer membrane protein (Omp31) in H. pylori 26695
YP_003728084.1	[KO:K00826], synonyms: BCAT, branched-chain amino acid-glutamate transaminase, branched-chain-amino-acid:2-oxoglutarate aminotransferase, glutamate-branched-chain amino acid transaminase, L-branched chain amino acid aminotransferase
YP_003728086.1	[KO:K02066], synonyms: ABC.X1.P
YP_003728087.1	Phosphate import ATP-binding protein pstB (Phosphate-transporting ATPase) (ABC phosphate transporter), ABC transporter related, ABC transporter, CP_lyasePhnK: phosphonate C-P lyase system protein PhnK
YP_003728088.1	[KO:K02067], synonyms: ABC.X1.S
YP_003728090.1	annotated as secreted protein involved in flagellar motility in H. pylori 26695
YP_003728092.1	[KO:K00428], synonyms: cytochrome c551 peroxidase
YP_003728093.1	[KO:K02337], synonyms: DPO3A1, DNA-dependent DNA polymerase III, deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed), deoxyribonucleic acid duplicase, DNA nucleotidyltransferase (DNA-directed), DNA replicase
YP_003728094.1	[KO:K06178], annotated as 4.2.1.70 in H. pylori 26695, synonyms: tRNA-pseudouridine synthase I, tRNA-uridine isomerase, tRNA pseudouridylate synthase I, transfer ribonucleate pseudouridine synthetase, pseudouridine synthase, transfer RNA pseudouridine synthetase, RNA-uridine isomerase, RNA pseudouridylate synthase
YP_003728095.1	annotated as thioredoxin in H. pylori 26695
YP_003728098.1	[KO:K07337]
YP_003728099.1	annotated as membrane-associated lipoprotein in H. pylori 26695
YP_003728105.1	[KO:K03650], synonyms: tdhF, tRNA modification GTPase mnmE, trmE
YP_003728106.1	[KO:K06346]
YP_003728107.1	[KO:K03217] [TC:2.A.9], annotated as putative inner membrane protein translocase component YidC in H. pylori 26695, synonyms: YIDC, spoIIIJ, OXA1
YP_003728108.1	synonyms: UPF0161 protein
YP_003728109.1	[KO:K03536], synonyms: tRNA 5' leader endonuclease, RNaseP, RNase P, Protein C5
YP_003728110.1	Ribosomal protein L34, Ribosomal protein L34, rpmH_bact: ribosomal protein L34
YP_003728111.1	[KO:K03559]
YP_003728112.1	[KO:K03561]
YP_003728113.1	[KO:K03664]
YP_003728114.1	[KO:K00919], synonyms: CMK, 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase, ATP:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol 2-phosphotransferase, CDP-ME kinase
YP_003728115.1	[KO:K03563]
YP_003728116.1	[KO:K03768], synonyms: peptidyl-prolyl cis-trans isomerase B, cyclosporin-type rotamase (ppi), PPIB, cis-trans proline isomerase, peptide bond isomerase, peptidylproline cis-trans-isomerase, PPIase
YP_003728127.1	[KO:K04773], synonyms: SPPA
YP_003728128.1	[KO:K01433], synonyms: formyltetrahydrofolate hydrolase, 10-formyltetrahydrofolate amidohydrolase, formyl-FH(4) hydrolase
YP_003728134.1	[KO:K02528], synonyms: S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase, 16S rRNA dimethylase, high level kasugamycin resistance protein ksgA, kasugamycin dimethyltransferase
YP_003728135.1	[KO:K07021], synonyms: RNase J
YP_003728136.1	[KO:K06041], annotated as polysialic acid capsule expression protein in H. pylori 26695, synonyms: D-arabinose-5-phosphate aldose-ketose-isomerase, D-arabinose-5-phosphate ketol-isomerase, phosphoarabinoisomerase
YP_003728137.1	[KO:K06941], synonyms: 23S rRNA m2A2503 methyltransferase
YP_003728143.1	[KO:K01870], synonyms: isoleucine-tRNA ligase, IleRS, isoleucine-tRNA synthetase, isoleucyl-transfer ribonucleate synthetase, L-isoleucine:tRNAIle ligase (AMP-forming)
YP_003728144.1	[KO:K03196], annotated as conjugative transfer regulon protein (TrbB) in H. pylori 26695
YP_003728145.1	[KO:K02412]
YP_003728146.1	[KO:K02420], synonyms: flagellar biosynthesis protein FliQ
YP_003728147.1	[KO:K00075], synonyms: UDP-N-acetylenolpyruvoylglucosamine reductase, UDP-GlcNAc-enoylpyruvate reductase, UDP-N-acetylenolpyruvoylglucosamine reductase, UDP-N-acetylglucosamine-enoylpyruvate reductase, UDP-N-acetylmuramate:NADP+ oxidoreductase, uridine diphospho-N-acetylglucosamine-enolpyruvate reductase, uridine diphosphoacetylpyruvoylglucosamine reductase, uridine-5'-diphospho-N-acetyl-2-amino-2-deoxy-3-O- lactylglucose:NADP-oxidoreductase
YP_003728148.1	Type II restriction enzyme RsrI (Endonuclease RsrI) (R.RsrI), Restriction endonuclease, type II, EcoRI, Restriction endonuclease EcoRI
YP_003728150.1	[KO:K03797], synonyms: ctpA
YP_003728152.1	[KO:K00655], synonyms: 1-acyl-glycerol-3-phosphate acyltransferase, 1-AGP acyltransferase, 1-AGPAT, Lysophosphatidic acid acyltransferase, LPAAT, 1-acyl-sn-glycero-3-phosphate acyltransferase, 1-acylglycero-3-phosphate acyltransferase, acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase, lysophosphatidate acyltransferase
YP_003728153.1	[KO:K03648], synonyms: UDG
YP_003728154.1	[KO:K00134], synonyms: GAPD, GAPDH, NAD-dependent glyceraldehyde phosphate dehydrogenase, glyceraldehyde phosphate dehydrogenase (NAD), D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating), 3-phosphoglyceraldehyde dehydrogenase, NAD-dependent glyceraldehyde phosphate dehydrogenase, NADH-glyceraldehyde phosphate dehydrogenase
YP_003728155.1	[KO:K00927], synonyms: 3-phosphoglycerate kinase, 3-phosphoglyceric acid phosphokinase, ATP-3-phospho-D-glycerate-1-phosphotransferase, ATP:D-3-phosphoglycerate 1-phosphotransferase, phosphoglycerokinase
YP_003728156.1	[KO:K03284] [TC:1.A.35], synonyms: magnesium and cobalt transport protein, TC.MIT
YP_003728158.1	synonyms: outer membrane protein (Omp29) (Omp5)
YP_003728159.1	[KO:K03832], synonyms: siderophore-mediated iron transport protein
YP_003728160.1	[KO:K03559]
YP_003728161.1	TonB-system energizer ExbB type-2, MotA/TolQ/ExbB proton channel family, exbB2: tonB-system energizer ExbB
YP_003728162.1	[KO:K07722]
YP_003728163.1	[KO:K00969], synonyms: Deamido-NAD(+) pyrophosphorylase, Deamido-NAD(+) diphosphorylase, Nicotinate mononucleotide adenylyltransferase, NaMN adenylyltransferase, ATP:nicotinate-nucleotide adenylyltransferase, deamido-NAD(+) diphosphorylase, deamido-NAD+ pyrophosphorylase, deamidonicotinamide adenine dinucleotide pyrophosphorylase, NaMN-ATase, nicotinate mononucleotide adenylyltransferase
YP_003728165.1	[KO:K00566], synonyms: S-adenosyl-L-methionine:tRNA (5-methylaminomethyl-2-thio-uridylate)-methyltransferase, transfer ribonucleate 5-methylaminomethyl-2-thiouridylate 5-methyltransferase, tRNA 5-methylaminomethyl-2-thiouridylate 5'-methyltransferase, tRNA-specific 2-thiouridylase mnmA
YP_003728168.1	[KO:K03686], annotated as co-chaperone and heat shock protein in H. pylori 26695
YP_003728171.1	[KO:K07787] [TC:2.A.6.1]
YP_003728172.1	annotated as cation efflux system protein in H. pylori 26695
YP_003728175.1	[KO:K01679], synonyms: fumarase C, fumarate hydratase class II
YP_003728177.1	[KO:K03470], synonyms: hybrid ribonuclease, hybridase (ribonuclease H), RNA*DNA hybrid ribonucleotidohydrolase, RNase H
YP_003728179.1	[KO:K07133]
YP_003728180.1	[KO:K02946], synonyms: RP-S10, 30S ribosomal protein S10, rps10, nusE
YP_003728181.1	[KO:K02906], synonyms: RP-L3, 50S ribosomal protein L3, rpl3
YP_003728182.1	[KO:K02926], synonyms: RP-L4, 50S ribosomal protein L4, rpl4
YP_003728183.1	[KO:K02892], synonyms: RP-L23, 50S ribosomal protein L23, rpl23
YP_003728184.1	[KO:K02886], synonyms: RP-L2, 50S ribosomal protein L2, rpl2
YP_003728185.1	[KO:K02965], synonyms: RP-S19, 30S ribosomal protein S19, rps19
YP_003728186.1	[KO:K02890], synonyms: RP-L22, 50S ribosomal protein L22, rpl22
YP_003728187.1	[KO:K02982], synonyms: RP-S3, 30S ribosomal protein S3, rps3
YP_003728188.1	[KO:K02878], synonyms: RP-L16, 50S ribosomal protein L16, rpl16
YP_003728189.1	[KO:K02904], synonyms: RP-L29, 50S ribosomal protein L29, rpL29
YP_003728190.1	[KO:K02961], synonyms: 30S ribosomal protein S17, rps17, RP-S17
YP_003728191.1	[KO:K02874], synonyms: RP-L14, 50S ribosomal protein L14, rpl14
YP_003728192.1	[KO:K02895], synonyms: RP-L24, 50S ribosomal protein L24, rpl24
YP_003728193.1	[KO:K02931], synonyms: rpl5, RP-L5, 50S ribosomal protein L5
YP_003728194.1	Ribosomal protein S14, Ribosomal protein S14p/S29e
YP_003728195.1	[KO:K02994], synonyms: RP-S8, 30S ribosomal protein S8, rps8
YP_003728196.1	[KO:K02933], synonyms: RP-L6, 50S ribosomal protein L6, rpl6
YP_003728197.1	[KO:K02881], synonyms: RP-L18, 50S ribosomal protein L18, rpl18
YP_003728198.2	[KO:K02988], synonyms: rps5, 30S ribosomal protein S5, RP-S5
YP_003728199.1	[KO:K02876], synonyms: RP-L15, 50S ribosomal protein L15, rpl15
YP_003728200.1	[KO:K03076] [TC:3.A.5]
YP_003728201.1	[KO:K01265], synonyms: methionine aminopeptidase, peptidase M
YP_003728202.1	[KO:K02518], synonyms: IF-1
YP_003728203.1	Ribosomal protein L36, Ribosomal protein L36, rpmJ_bact: ribosomal protein L36
YP_003728204.1	[KO:K02952], synonyms: rps13, RP-S13, 30S ribosomal protein S13
YP_003728205.1	[KO:K02948], synonyms: rps11, RP-S11, 30S ribosomal protein S11
YP_003728206.1	[KO:K02986], synonyms: rps4, RP-S4, 30S ribosomal protein S4
YP_003728207.1	[KO:K03040], synonyms: RNAP subunit alpha, Transcriptase subunit alpha, RNA polymerase subunit alpha, nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed), eoxyribonucleic acid-dependent ribonucleic acid polymerase, DNA-dependent ribonucleate nucleotidyltransferase, DNA-dependent RNA nucleotidyltransferase, RNA nucleotidyltransferase (DNA-directed)
YP_003728208.1	[KO:K02879], synonyms: 50S ribosomal protein L17, RP-L17, rpl17
YP_003728211.1	[KO:K00949], synonyms: ATP:thiamin pyrophosphotransferase, thiamin diphosphokinase, thiaminokinase, TPTase
YP_003728212.1	[KO:K03811] [TC:9.A.4]
YP_003728215.1	[KO:K03707]
YP_003728219.1	[KO:K01657], synonyms: chorismate pyruvate-lyase (amino-accepting)
YP_003728220.1	[KO:K01658], synonyms: glutamine amido-transferase, trpD, chorismate pyruvate-lyase (amino-accepting)
YP_003728221.1	[KO:K00766], synonyms: anthranilate 5-phosphoribosylpyrophosphate phosphoribosyltransferase, N-(5-phospho-D-ribosyl)-anthranilate:diphosphate phospho-alpha-D-ribosyltransferase, phosphoribosyl-anthranilate pyrophosphorylase, phosphoribosylanthranilate transferase, phosphoribosyl-anthranilate diphosphorylase
YP_003728222.1	5.3.1.24] [KO:K01609 K01817], synonyms: Tryptophan biosynthesis protein trpCF, N-(5'-phosphoribosyl)anthranilate isomerase, N-(5-phospho-beta-D-ribosyl)anthranilate aldose-ketose-isomerase, PRA isomerase, PRAI, 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose-5-phosphate carboxy-lyase (cyclizing), indole-3-glycerophosphate synthase, indoleglycerol phosphate synthase
YP_003728223.1	[KO:K01696], synonyms: tryptophan synthase subunit beta, indoleglycerol phosphate aldolase, L-serine hydro-lyase (adding indoleglycerol-phosphate), L-tryptophan synthetase, tryptophan desmolase
YP_003728224.1	[KO:K01695], synonyms: indoleglycerol phosphate aldolase, L-serine hydro-lyase (adding indoleglycerol-phosphate), L-tryptophan synthetase, tryptophan desmolase, tryptophan synthetase
YP_003728226.1	5.4.2.2] [KO:K01835 K01840], annotated as phosphomannomutase in H. pylori 26695, but according to J99 annotation can catalyze mutase of both D-mannose 1,6-phosphate and D-glucose 1,6-phosphate, synonyms: pgm, manB, alpha-D-mannose 1,6-phosphomutase, phosphomannose mutase, phosphoglucose mutase, glucose phosphomutase, alpha-D-glucose 1,6-phosphomutase
YP_003728228.1	[KO:K00343], synonyms: NADH dehydrogenase subunit N, NQO14, NADH-ubiquinone oxidoreductase, NQO14 subunit (NQO14)
YP_003728229.1	[KO:K00342], synonyms: NADH dehydrogenase subunit M, NQO13, NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13)
YP_003728230.1	[KO:K00341], synonyms: NADH dehydrogenase subunit L, NQO12, NADH-ubiquinone oxidoreductase, NQO12 subunit (NQO12)
YP_003728231.1	[KO:K00340], synonyms: NADH dehydrogenase subunit K, NADH-ubiquinone oxidoreductase, NQO11 subunit (NQO11)
YP_003728232.1	[KO:K00339], synonyms: NQO10, NADH dehydrogenase subunit J, NADH-ubiquinone oxidoreductase, NQO10 subunit (NQO10)
YP_003728233.1	[KO:K00338], synonyms: NADH dehydrogenase subunit I, NQO9, NADH dehydrogenase I subunit I, NDH-1 subunit I
YP_003728234.1	[KO:K00337], synonyms: NQO8, NADH dehydrogenase I subunit H, NDH-1 subunit H
YP_003728235.1	[KO:K00336], synonyms: NQO3
YP_003728236.1	[KO:K00335]
YP_003728237.1	[KO:K00334]
YP_003728238.1	[KO:K00333], synonyms: NADH dehydrogenase subunit D, dihydronicotinamide adenine dinucleotide-coenzyme Q reductase, NADH coenzyme Q1 reductase, NADH-ubiquinone oxidoreductase, NQO4 subunit (NQO4)
YP_003728239.1	[KO:K00332], annotated as, synonyms: NQO5, NADH-quinone oxidoreductase,, coenzyme Q reductase, dihydronicotinamide adenine dinucleotide-coenzyme Q reductase, DPNH-coenzyme Q reductase, NADH coenzyme Q1 reductase, NADH-ubiquinone oxidoreductase, NADH-Q6 oxidoreductase, reduced nicotinamide adenine dinucleotide-coenzyme Q reductase
YP_003728240.1	[KO:K00331], annotated as NADH dehydrogenase subunit B in H. pylori 26695, synonyms: NQO6, NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6)
YP_003728241.1	[KO:K00330], annotated as NADH dehydrogenase subunit A in H. pylori 26695, synonyms: NADH-quinone oxidoreductase subunit, EC 1.6.995
YP_003728242.1	[KO:K01463] KO: K12410, KEGG association: Metabolism; Metabolism of Cofactors and Vitamins; Nicotinate and, nicotinamide metabolism; Metabolism; Metabolism of Cofactors and Vitamins; Pantothenate and, CoA biosynthesis, annotated as NAD-dependent deacetylase in H. pylori J99, synonyms: Regulatory protein SIR2 homolog, cobB, deacetylase of acetyl-CoA synthetase, NAD-dependent, ECK1106, JW1106, ycfY
YP_003728244.1	[KO:K00762], synonyms: OPRT, OPRTase, orotate phosphoribosyl pyrophosphate transferase, orotic acid phosphoribosyltransferase, orotidine 5'-monophosphate pyrophosphorylase, orotidine-5'-phosphate:diphosphate phospho-alpha-D-ribosyl-transferase, orotidylic acid pyrophosphorylase
YP_003728245.1	[KO:K02838], synonyms: RF-4, MRRF, Ribosome-releasing factor
YP_003728246.1	[KO:K03075] [TC:3.A.5], synonyms: preprotein translocase subunit SecG
YP_003728247.1	[KO:K02169]
YP_003728248.1	[KO:K01867], synonyms: Tryptophan-tRNA ligase, TrpRS
YP_003728249.1	[KO:K02035] [TC:3.A.1.5], annotated as oligopeptide ABC transporter, periplasmic oligopeptide-binding protein in H. pylori 26695, synonyms: ABC.PE.S
YP_003728250.1	[KO:K02033] [TC:3.A.1.5], annotated as oligopeptide ABC transporter, permease protein in H. pylori 26695, synonyms: ABC.PE.P
YP_003728252.1	[KO:K00014], synonyms: 5-dehydroshikimate reductase, 5-dehydroshikimic reductase, DHS reductase, shikimate oxidoreductase, shikimate:NADP(+) 5-oxidoreductase
YP_003728253.1	synonyms: orn, vacB, virD1, virD2, rapE, rapA, virulence associated protein homolog (VacB), RNase R
YP_003728254.1	[KO:K02340], synonyms: DPO3D1
YP_003728255.1	[KO:K02990], synonyms: 30S ribosomal protein S6, rps6, RP-S6
YP_003728256.1	[KO:K03111], synonyms: helix-destabilizing protein
YP_003728257.1	[KO:K02963], synonyms: RP-S18, rps18
YP_003728262.1	[KO:K09794]
YP_003728263.1	[KO:K01872], synonyms: Alanine-tRNA ligase, AlaRS, alanyl-transfer ribonucleate synthase, alanyl-transfer RNA synthetase, L-alanine:tRNAAla ligase (AMP-forming), alanine translase
YP_003728264.1	[KO:K06287]
YP_003728267.1	[KO:K01426], synonyms: formamide amidohydrolase, fmdA
YP_003728268.1	[KO:K01956], annotated with gene name pyrAa in H. pylori 26695, synonyms: carbamoyl-phosphate synthetase glutamine chain
YP_003728269.1	[KO:K09804]
YP_003728274.1	[KO:K00796], synonyms: (2-amino-4-hydroxy-7, 8-dihydropteridin-6-yl)methyl-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase, 2-amino-4-hydroxy-6-hydroxymethyl-7, 8-dihydropteridine-diphosphate:4-aminobenzoate 2-amino-4-hydroxydihydropteridine-6-methenyltransferase, 7,8-dihydropteroate synthase, 7,8-dihydropteroic acid synthetase, DHPS
YP_003728275.1	[KO:K02341], synonyms: DPO3D2, DNA polymerase III delta prime subunit
YP_003728277.1	[KO:K00928], synonyms: aspartokinase
YP_003728278.1	[KO:K08311], synonyms: NUDH, RNA pyrophosphohydrolase, invA
YP_003728279.1	synonyms: Cytochrome c-553 [Precursor]
YP_003728280.1	[KO:K02495], synonyms: hemZ, coproporphyrinogen-III:S-adenosyl-L-methionine oxidoreductase (decarboxylating)
YP_003728281.1	[KO:K06199], annotated as CrcB protein (KEGG)
YP_003728282.1	[KO:K01719]
YP_003728284.1	[KO:K00102], synonyms: (R)-lactate:ferricytochrome-c 2-oxidoreductase, cytochrome-dependent D-(-)-lactate dehydrogenase, D-(-)-lactic cytochrome c reductase
YP_003728285.1	Undecaprenyl pyrophosphate synthetase (UPP synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS), Di-trans-poly-cis-decaprenylcistransferase, putative undecaprenyl diphosphate synthase, uppS: undecaprenyl diphosphate synthase
YP_003728286.1	[KO:K01990] [TC:3.A.1], annotated as ABC transporter, ATP-binding protein in H. pylori 26695, synonyms: ABC-2.A, ccmA2, ybhF
YP_003728291.1	[KO:K01945], annotated as glycinamide ribonucleotide synthetase in H. pylori 26695, synonyms: 2-amino-N-ribosylacetamide 5'-phosphate kinosynthase, 5'-phosphoribosylglycinamide synthetase, 5-phospho-D-ribosylamine:glycine ligase (ADP-forming), glycinamide ribonucleotide synthetase, phosphoribosylglycinamide synthetase, GARS
YP_003728294.1	[KO:K04744], annotated as putative role in outermembrane permeability in H. pylori J99
YP_003728295.1	[KO:K07100]
YP_003728296.1	[KO:K00962], synonyms: polynucleotide phosphorylase, PNPase, polyribonucleotide phosphorylase, polyribonucleotide:phosphate nucleotidyltransferase, nucleoside diphosphate:polynucleotidyl transferase
YP_003728297.1	[KO:K02110] [TC:3.A.2.1], synonyms: F0F1 ATP synthase subunit C, ATPF0C, ATP synthase C chain, lipid-binding protein
YP_003728299.1	[KO:K00640], synonyms: SAT, acetyl-CoA:L-serine O-acetyltransferase, SATase, L-serine acetyltransferase, serine acetyltransferase
YP_003728300.1	Type II restriction enzyme NlaIII (Endonuclease NlaIII) (R.NlaIII), ICEA, ICEA Protein
YP_003728301.1	ICEA, sub-chain
YP_003728302.1	[KO:K07318], annotated as ulcer associated adenine specific DNA methyltransferase in H. pylori 26695
YP_003728305.1	[KO:K06148] [TC:3.A.1.110 3.A.1.112], annotated as multidrug resistance protein in H. pylori 26695, synonyms: ABCC-BAC, mdlA, mdlB, cydC, cydD
YP_003728306.1	[KO:K02358], synonyms: tufA, tufB, elongation factor Tu
YP_003728307.1	Ribosomal protein L33, Ribosomal protein L33, rpmG_bact: ribosomal protein L33
YP_003728308.1	SecE subunit of protein translocation complex
YP_003728309.1	[KO:K02601]
YP_003728310.1	[KO:K02867], synonyms: rpl11, 50S ribosomal protein L11, RP-L11
YP_003728311.1	[KO:K02863], synonyms: 50S ribosomal protein L1, rpl1, RP-L1
YP_003728312.1	[KO:K02864], synonyms: rpl10, 50S ribosomal protein L10, RP-L10
YP_003728313.1	[KO:K02935], synonyms: 50S ribosomal protein L7/L12, rpl7, RP-L7
YP_003728315.1	[KO:K02950], synonyms: RP-S12, 30S ribosomal protein S12
YP_003728316.1	[KO:K02992], synonyms: 30S ribosomal protein S7, rps7
YP_003728317.1	[KO:K02355], H. pylori homology not captured by GenDB: locus HP1195 of strain 26695
YP_003728318.1	Aldo-keto reductase family 1 member C1 homolog (20-alpha-hydroxysteroid dehydrogenase) (20-alpha-HSD) (Dihydrodiol dehydrogenase 1) (DD-1) (DD1), Aldo/keto reductase, Aldo/keto reductase family, Kv_beta: voltage-dependent potassium channel beta subunit
YP_003728321.1	2.4.1.56] [KO:K02843], synonyms: ADP-heptose-LPS heptosyltransferase II RfaF, WAAF, lipopolysaccharide N-acetylglucosaminyltransferase ; heptosyltransferase, LPS heptosyltransferase
YP_003728322.1	[KO:K01892], synonyms: Histidine-tRNA ligase, HisRS, histidyl-transfer ribonucleate synthetase, L-histidine:tRNAHis ligase (AMP-forming)
YP_003728323.1	[KO:K00133], synonyms: ASA dehydrogenase, ASADH, aspartic beta-semialdehyde dehydrogenase, L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
YP_003728325.1	[KO:K01674], synonyms: carbonate anhydrase, carbonate hydro-lyase (carbon-dioxide-forming), carbonic acid anhydrase, carbonic dehydratase, carboxyanhydrase
YP_003728327.1	[KO:K03445] [TC:2.A.1.2], annotated as sugar efflux transporter in H. pylori 26695, synonyms: YICM
YP_003728333.1	[KO:K03317] [TC:2.A.41], annotated as pyrimidine nucleoside transport protein in H. pylori 26695, synonyms: TC.CNT
YP_003728334.1	[KO:K01839], synonyms: alpha-D-glucose-1, 6-bisphosphate:deoxy-D-ribose-1-phosphate phosphotransferase, alpha-D-ribose 1,5-phosphomutase, phosphoribomutase, phosphodeoxyribomutase
YP_003728335.1	[KO:K03784], synonyms: inosine-guanosine phosphorylase, purine deoxynucleoside phosphorylase, purine nucleoside phosphorylase
YP_003728342.1	[K06901] [TC:2.A.1.40]
YP_003728343.1	[KO:K02429] [TC:2.A.1.7], annotated as glucose/galactose transporter (GluP) in H. pylori 26695
YP_003728346.1	[KO:K02030] [TC:3.A.1.3], annotated as glutamine ABC transporter, periplasmic glutamine-binding protein in H. pylori 26695, synonyms: ABC.GLN1.S
YP_003728347.1	[KO:K02028] [TC:3.A.1.3], synonyms: ABC.GLN1.A, annotated as glutamine ABC transporter, ATP-binding protein in H. pylori 26695
YP_003728348.1	[KO:K02029] [TC:3.A.1.3], annotated as glutamine ABC transporter, permease protein in H. pylori 26695
YP_003728349.1	[KO:K02029] [TC:3.A.1.3], annotated as glutamine ABC transporter, permease protein in H. pylori 26695, synonyms: ABC.PA.P
YP_003728350.1	[KO:K06200]
YP_003728352.1	[KO:K01810], synonyms: phosphoglucose isomerase, phosphohexose isomerase, PHI, D-glucose-6-phosphate aldose-ketose-isomerase, D-glucose-6-phosphate ketol-isomerase, phosphoglucoisomerase, phosphohexoisomerase, phosphohexomutase
YP_003728353.1	annotated as tetracycline resistance protein TetA(P), putative in H. pylori 26695
YP_003728354.1	[KO:K00384], synonyms: NADPH2:oxidized thioredoxin oxidoreductase, thioredoxin disulfide reductase
YP_003728355.1	annotated as putative component of cation transport for cbb3-type oxidase for H. pylori J99
YP_003728358.1	[KO:K03839]
YP_003728359.1	[KO:K07042], annotated as putative metalloprotease in 26695
YP_003728361.1	Filamentation induced by cAMP protein Fic
YP_003728362.1	[KO:K00286], synonyms: P5C reductase, P5CR, 1-pyrroline-5-carboxylate reductase, L-proline oxidase, L-proline-NAD(P)+ 5-oxidoreductase, NADPH-L-delta1-pyrroline carboxylic acid reductase
YP_003728363.1	annotated as outer membrane protein (omp26) in H. pylori 26695
YP_003728364.1	annotated as outer membrane protein (omp25) in H. pylori 26695
YP_003728366.1	2.4.1.157 2.4.1.46] [KO:K02563], synonyms: Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase, CAZy known activities: 1,2-diacylglycerol 3-galactosyltransferase ; 1,2-diacylglycerol 3-glucosyltransferase ; UDP-GlcNAc: Und-PP-MurAc-pentapeptide -N-acetylglucosaminyltransferase
YP_003728367.1	synonyms: Flagellar assembly factor fliW 1
YP_003728369.1	[KO:K01873], synonyms: Valine-tRNA ligase, ValRS, valine transfer ribonucleate ligase, L-valine:tRNAVal ligase (AMP-forming), valyl-transfer ribonucleate synthetase, valyl-transfer ribonucleic acid synthetase
YP_003728370.1	[KO:K03106]
YP_003728371.1	[KO:K02959], synonyms: 30S ribosomal protein S16, RP-S16
YP_003728372.1	[KO:K06960]
YP_003728373.1	[KO:K02860], synonym: Ribosome maturation factor rimM
YP_003728374.1	[KO:K00554], synonyms: M1G-methyltransferase, tRNA [GM37] methyltransferase, S-adenosyl-L-methionine:tRNA (guanine-1-N-)-methyltransferase, transfer ribonucleate guanine 1-methyltransferase
YP_003728375.1	[KO:K02884], synonyms: 50S ribosomal protein L19
YP_003728382.1	[KO:K01947], synonyms: biotin-protein ligase, Biotin operon repressor/biotin acetyl coenzyme A carboxylase synthetase, acetyl CoA holocarboxylase synthetase, acetyl-CoA carboxylase biotin holoenzyme synthetase, biotin:apo-acetyl-CoA:carbon-dioxide ligase (ADP-forming) ligase (AMP-forming), biotin-acetyl-CoA carboxylase synthetase
YP_003728383.1	[KO:K03496], annotated as SpoOJ regulator (soj) in H. pylori 26695
YP_003728384.1	[KO:K03497], synonyms: plasmid replication-partition related protein
YP_003728385.1	[KO:K02109] [TC:3.A.2.1], synonyms: ATPF0B, F0F1 ATP synthase subunit B'
YP_003728386.1	[KO:K02109] [TC:3.A.2.1], synonyms: ATPF0B, F0F1 ATP synthase subunit B
YP_003728387.1	[KO:K02113] [TC:3.A.2.1], synonyms: ATPF1D, F0F1 ATP synthase subunit delta
YP_003728388.1	[KO:K02111] [TC:3.A.2.1], synonyms: F0F1 ATP synthase subunit alpha
YP_003728389.1	[KO:K02115] [TC:3.A.2.1], synonyms: ATPF1G, F0F1 ATP synthase subunit gamma
YP_003728390.1	[KO:K02112] [TC:3.A.2.1], synonyms: ATPF1B, F0F1 ATP synthase subunit beta, F-ATPase subunit beta, ATP synthase F1 sector subunit beta
YP_003728391.1	[KO:K02114] [TC:3.A.2.1], synonyms: F0F1 ATP synthase subunit epsilon, ATPF1E, F-ATPase epsilon subunit, atpE
YP_003728393.1	[KO:K03559]
YP_003728394.1	[KO:K03832]
YP_003728395.1	[KO:K03641], synonyms: translocation protein TolB
YP_003728396.1	[KO:K03640], synonyms: omp18 [H. pylori 26695]
YP_003728398.1	[KO:K03775], synonyms: peptidyl-prolyl cis-trans isomerase, FKBP-type rotamase, PPIase, Rotamase, peptide bond isomerase, peptidylproline cis-trans-isomerase, PPIase
YP_003728401.1	[KO:K00558], synonyms: cytosine specific DNA methyltransferase (BSP6IM), DNMT, deoxyribonucleic (cytosine-5-)-methyltransferase, DNA 5-cytosine methylase, S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase
YP_003728403.1	[KO:K02396]
YP_003728405.1	Gamma-glutamyltranspeptidase precursor [Contains: Gamma-glutamyltranspeptidase large chain; Gamma-glutamyltranspeptidase small chain], Gamma-glutamyltranspeptidase, Gamma-glutamyltranspeptidase, g_glut_trans: gamma-glutamyltransferase
YP_003728406.1	[KO:K07126]
YP_003728411.1	[KO:K03702]
YP_003728412.1	synonyms: outer membrane protein (Omp24)
YP_003728413.1	[KO:K01756], synonyms: ads1, 6-N-(1,2-dicarboxyethyl)AMP AMP-lyase, succino AMP-lyase, adenylosuccinase, ASase
YP_003728414.1	[KO:K00170]
YP_003728415.1	Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal, Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain
YP_003728416.1	[KO:K00171], synonyms: pyruvate:ferredoxin 2-oxidoreductase, pyruvic-ferredoxin oxidoreductase, alternative GO id: [GO:0018696]
YP_003728417.1	[KO:K00172], synonyms: E1.2.7.1G, porC, pyruvate:ferredoxin 2-oxidoreductase, pyruvate synthetase, pyruvic-ferredoxin oxidoreductase, alternate GO tags: [GO:0018696]
YP_003728418.1	gene name given as omp23 in H. pylori 26695
YP_003728420.1	synonyms: LPS biosynthesis protein, liposaccharide biosynthesis protein
YP_003728421.1	[KO:K00002], synonyms: cinnamyl-alcohol dehydrogenase ELI3-2 (cad), AKR1A1, ALR1, adhP, yahK, adhA, aldehyde reductase (NADPH2), NADP-aldehyde reductase
YP_003728422.1	[KO:K00845], synonyms: gck, ATP:D-glucose 6-phosphotransferase, glucose kinase
YP_003728423.1	[KO:K01057], synonyms: pgl, glucose-6-phosphate 1-dehydrogenase, 6-phospho-D-glucono-1,5-lactone lactonohydrolase, phosphogluconolactonase, 6PGL
YP_003728424.1	[KO:K00036], synonyms: D-glucose-6-phosphate:NADP+ 1-oxidoreductase, G6PD, G6PDH, NADP-dependent glucose 6-phosphate dehydrogenase
YP_003728425.1	[KO:K01690], synonyms: 6-phosphogluconate dehydratase
YP_003728426.1	4.1.3.16] [KO:K01625 K01650], synonyms: 2-keto-3-deoxy-6-phosphogluconate aldolase, 2-keto-3-deoxygluconate-6-P-aldolase, KDPG aldolase, phospho-2-dehydro-3-deoxygluconate aldolase
YP_003728427.1	[KO:K07126], synonyms: cysteine-rich protein C
YP_003728428.1	[K00540], functional annotation not supported by KEGG
YP_003728430.1	[KO:K01784]
YP_003728431.1	[KO:K06173], previously annotated as, synonyms: tRNA-uridine isomerase I, tRNA pseudouridylate synthase I, hisT
YP_003728432.1	[KO:K07091]
YP_003728433.1	[KO:K00573], synonyms: Protein-beta-aspartate methyltransferase, PIMT, Protein L-isoaspartyl methyltransferase, L-isoaspartyl protein carboxyl methyltransferase, D-aspartyl/L-isoaspartyl methyltransferase, L-aspartyl/L-isoaspartyl protein methyltransferase, protein O-methyltransferase (L-isoaspartate)
YP_003728434.1	[KO:K00526], synonyms: ribonucleotide-diphosphate reductase subunit beta, nrdF, E1.17.4.1B, 2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase, 2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase, nucleoside diphosphate reductase, ribonucleoside 5'-diphosphate reductase, ribonucleotide reductase small subunit
YP_003728439.1	[KO:K01946], synonyms: biotin carboxylase (component of acetyl CoA carboxylase), biotin-carboxyl-carrier-protein:carbon-dioxide ligase (ADP-forming)
YP_003728440.1	[KO:K02160], synonyms: biotin carboxyl carrier protein (FabE), bccp
YP_003728441.1	[KO:K01494], synonyms: 5-methyl-dCTP deaminase, dCTP aminohydrolase, deoxycytidine triphosphate deaminase
YP_003728443.1	[KO:K09761], synonyms: 16S rRNA m3U1498 methyltransferase
YP_003728445.1	[KO:K01772], synonyms: Protoheme ferro-lyase, Heme synthetase, ferro-protoporphyrin chelatase, heme synthase, heme synthetase, protoheme ferro-lyase (protoporphyrin-forming)
YP_003728446.1	[KO:K03981], synonyms: protein disulfide-isomerase
YP_003728447.1	[KO:K02195 K02198] [TC:3.A.1.107], synonyms: heme exporter membrane protein CcmC, cytochrome c-type biogenesis protein CcmF
YP_003728448.1	Alpha-(1,3)-fucosyltransferase 11; Galactoside 3-L-fucosyltransferase 11; Fucosyltransferase 11; FucT-XI; Fuc-TXI;, Glycosyl transferase, family 10
YP_003728450.1	[KO:K00262], synonyms: NADP-GDH, NADP-specific glutamate dehydrogenase, L-glutamate:NADP+ oxidoreductase, L-glutamic acid dehydrogenase
YP_003728451.1	[KO:K02493]
YP_003728452.1	synonyms: Zinc-metallo protease (YJR117W)
YP_003728458.1	[KO:K04066], synonyms: ATP-dependent helicase priA, Replication factor Y
YP_003728460.1	[KO:K04564], synonyms: iron-dependent superoxide dismutase, superoxide:superoxide oxidoreductase, sodA, sodB, SOD2, old GO entries: GO:0004785, GO:0008382, GO:0008383, GO:0016954
YP_003728461.1	[KO:K11065], synonyms: adhesin-thiol peroxidase (TagD), PRDX, Prx, thiol-containing-reductant:hydroperoxide oxidoreductase
YP_003728462.1	[KO:K03408]
YP_003728463.1	[KO:K03407], synonyms: histidine kinase
YP_003728464.1	Response regulator receiver
YP_003728465.1	CheW-like protein, CheW-like domain
YP_003728466.1	[KO:K03269]
YP_003728467.1	[KO:K06997]
YP_003728468.1	[KO:K03182], synonyms: 3-octaprenyl-4-hydroxybenzoate decarboxylase, 3-polyprenyl 4-hydroxybenzoate decarboxylase, polyprenyl p-hydroxybenzoate, PPHB decarboxylase
YP_003728469.1	[KO:K00058], synonyms: 3-phospho-D-glycerate:NAD+ 2-oxidoreductase, alpha-KG reductase, 3PHP reductase, PGDH, phosphoglyceric acid dehydrogenase
YP_003728471.1	[KO:K02945], synonyms: rps1
YP_003728472.1	[KO:K03527], synonyms: lytB
YP_003728473.1	[KO:K00800]
YP_003728474.1	[KO:K01890], synonyms: L-phenylalanine:tRNAPhe ligase (AMP-forming), phenylalanine translase, phenylalanyl-transfer ribonucleate synthetase, phenylalanyl-tRNA ligase, PheRS
YP_003728475.1	[KO:K01889], synonyms: Phenylalanine-tRNA ligase alpha chain, PheRS
YP_003728477.1	[KO:K02503], Annotated as protein kinase C inhibitor pkcI
YP_003728478.1	annotated as NifS-like protein for Helicobacter pylori 26695
YP_003728480.1	[KO:K07812] [TC:5.A.3.4], synonyms: Biotin sulfoxide reductase (BisC)
YP_003728482.1	[KO:K01951], synonyms: Glutamine amidotransferase, GMP synthetase, bifunctional GMP synthase/glutamine amidotransferase protein
YP_003728487.1	[KO:K00574], synonyms: CFA synthase, cyclopropane fatty acid synthase, S-adenosyl-L-methionine:unsaturated-phospholipid methyltransferase (cyclizing), unsaturated-phospholipid methyltransferase
YP_003728488.1	[KO:K01874], synonyms: methionine-tRNA ligase, MetRS
YP_003728489.1	[KO:K01772]
YP_003728493.1	[KO:K01585], synonyms: L-arginine carboxy-lyase (agmatine-forming)
YP_003728494.1	[KO:K07339]
YP_003728507.1	CagE, TrbE, VirB component of type IV transporter system, CagE, TrbE, VirB family, component of type IV transporter system, VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
YP_003728508.1	[KO:K03168]
YP_003728510.1	VirB8, VirB8 protein
YP_003728513.1	Bacterial conjugation TrbI-like protein
YP_003728514.1	Bacterial conjugation TrbI-like protein
YP_003728518.1	[KO:K03196]
YP_003728522.1	COG3843 Type IV secretory pathway, VirD2 components (relaxase)
YP_003728526.1	[KO:K03496], synonyms: soj
YP_003728542.1	Designated XerCD-family integrase/recombinase in other H. pylori strains but neither KEGG orthology nor sequence similarity support this
YP_003728548.1	[KO:K07344]
YP_003728558.1	[KO:K03168]
YP_003728559.1	like traG
YP_003728565.1	[KO:K03195], synonyms: TrbI
YP_003728569.1	[KO:K03199]
YP_003728582.1	[KO: K03442] [TC:1.A.23]
YP_003728587.1	[KO:K03531]
YP_003728588.1	[KO:K03590]
YP_003728589.1	[KO:K03770]
YP_003728590.1	[KO:K00833], synonyms: 7,8-diamino-pelargonic acid aminotransferase, DAPA aminotransferase
YP_003728592.1	6.3.5.7] [KO:K02435], synonyms: Glutamyl-tRNA(Gln) amidotransferase subunit C, glu-tRNA(gln) amidotransferase, Glu-tRNAGln:L-glutamine amido-ligase (ADP-forming), glutaminyl-tRNA synthase (glutamine-hydrolysing), aspartyl-tRNA(Asn) amidotransferase
YP_003728593.1	[KO:K01834], synonyms: Phosphoglyceromutase, BPG-independent PGAM, iPGM, D-phosphoglycerate 2,3-phosphomutase, monophosphoglycerate mutase, phosphoglycerate phosphomutase
YP_003728595.1	[KO:K01879]
YP_003728598.1	Multidrug resistance protein mdtB (Multidrug transporter mdtB), Acriflavin resistance protein, AcrB/AcrD/AcrF family, 2A0601: heavy metal efflux pump, CzcA family
YP_003728605.1	[KO:K00057], synonyms: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
YP_003728606.1	[KO:K01878], synonyms: glycyl-tRNA synthetase alpha chain
YP_003728608.1	[KO:K07164]
YP_003728609.1	[KO:K02527]
YP_003728611.1	[KO:K01718], synonyms: Ribosomal large subunit pseudouridine synthase D (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D), It is unfortunately unclear from the annotation in KEGG and UniProt wether this is an enzyme in the ribosomal or metabolic pseudouridine synthesis
YP_003728613.1	synonyms: listed as oxygen-insensitive NAD(P)H nitroreductase for 26695
YP_003728615.1	[KO:K03743]
YP_003728617.1	[KO:K01963], synonyms: acetyl coenzyme A carboxylase, acetyl-CoA:carbon-dioxide ligase (ADP-forming)
YP_003728624.1	putative sodium:hydrogen antiporter
YP_003728625.1	[KO:K07567], synonyms: TdcF protein
YP_003728626.1	[KO:K00285]
YP_003728627.1	[KO:K03310] [TC:2.A.25], synonyms: D-alanine glycine permease
YP_003728628.1	[KO:K01775]
YP_003728629.1	[KO:K02030] [TC:3.A.1.3]
YP_003728630.1	[KO:K02029] [TC:3.A.1.3]
YP_003728634.1	hypothetical proline/betaine transporter
YP_003728635.1	Outer membrane protein, Helicobacter, Helicobacter outer membrane protein
YP_003728636.1	GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family
YP_003728637.1	[KO:K04071]
YP_003728638.1	putative 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (PTP synthase), 6-pyruvoyl tetrahydropterin synthase and hypothetical protein
YP_003728640.1	[KO:K03787]
YP_003728641.1	[KO:K00795]
YP_003728642.1	[KO:K01495]
YP_003728643.1	[KO:K03799]
YP_003728644.1	[KO:K06176]
YP_003728645.1	RecR protein, RecR protein, recR: recombination protein RecR
YP_003728647.1	annotated as outer membrane protein (Omp22) in H. pylori 26695
YP_003728648.1	annotated as hypothetical conserved vacuolating cytotoxin (VacA) paralog in other strands (J99)
YP_003728649.1	[KO:K00134]
YP_003728651.1	Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate synthetase ammonia chain), Carbamoyl-phosphate synthase, large subunit, glutamine-dependent, Carbamoyl-phosphate synthase L chain, ATP binding domain, CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit
YP_003728653.1	TonB-dependent receptor, plug, TonB-dependent Receptor Plug Domain
YP_003728655.1	TonB-dependent receptor, beta-barrel, TonB dependent receptor
YP_003728658.1	synonyms: hopB, outer membrane protein HopB
YP_003728659.1	synonyms: hopC, outer membrane protein HopC
YP_003728662.1	[KO:K03657]
YP_003728663.1	[KO:K07317]
YP_003728665.1	[KO:K02390]
YP_003728668.1	[KO:K00625]
YP_003728670.1	Acetate kinase, Acetokinase family, ackA: acetate kinase
YP_003728673.1	[KO:K04652]
YP_003728674.1	[KO:K04653]
YP_003728675.1	Hydrogenase formation HypD protein, Hydrogenase formation hypA family, hypD: hydrogenase expression/formation protein HypD
YP_003728676.1	Hydrogenase formation HypD protein, hypD: hydrogenase expression/formation protein HypD
YP_003728681.1	Conserved hypothetical protein CHP00053, TIGR00053: conserved hypothetical protein TIGR00053
YP_003728682.1	Thioesterase superfamily
YP_003728683.1	probable short-chain type dehydrogenase/reductase vdlC, Short-chain dehydrogenase/reductase SDR, short chain dehydrogenase
YP_003728684.1	Bacterial transport system permease protein, FecCD transport family
YP_003728685.1	Spermidine/putrescine import ATP-binding protein potA, ABC transporter related, ABC transporter, ABC_phnC: phosphonate ABC transporter, ATP-binding protein
YP_003728686.1	Autotransporter beta-domain, Autotransporter beta-domain
YP_003728687.1	Vacuolating cytotoxin, Vacuolating cyotoxin
YP_003728688.1	[KO:K01883]
YP_003728689.1	[KO:K03980]
YP_003728691.1	[KO:K03550]
YP_003728697.1	[KO:K02902]
YP_003728699.1	[KO:K01000]
YP_003728700.1	[KO:K01925]
YP_003728702.1	[KO:K07107]
YP_003728703.1	[KO:K03308]
YP_003728704.1	[KO:K03308]
YP_003728705.1	[K01058]
YP_003728706.1	DNA polymerase III, beta chain, DNA polymerase III beta subunit, N-terminal domain, dnan: DNA polymerase III, beta subunit
YP_003728707.1	DNA gyrase, subunit B, DNA gyrase B, gyrB: DNA gyrase, B subunit
YP_003728708.1	N6 adenine-specific DNA methyltransferase, N12 class
YP_003728710.1	R.Pab1 restriction endonuclease
YP_003728711.1	Uncharacterized metalloprotease yebA precursor, Duplicated hybrid motif, Peptidase family M23
YP_003728712.1	[KO:K08077], Uridine diphosphate glucose pyrophosphatase (UDPG pyrophosphatase) (UGPPase) (Nucleoside diphosphate-linked moiety X motif 14) (Nudix motif 14), Nucleoside diphosphate pyrophosphatase, NUDIX domain, TIGR00052: conserved hypothetical protein TIGR00052
YP_003728714.1	D-lactate dehydrogenase [cytochrome] 1, mitochondrial precursor (D-lactate ferricytochrome C oxidoreductase) (D-LCR), Glycolate oxidase subunit GlcD, FAD linked oxidases, C-terminal domain, glcD: glycolate oxidase, subunit GlcD
YP_003728715.1	Dihydrodipicolinate reductase (DHPR), Dihydrodipicolinate reductase, bacterial and plant, Dihydrodipicolinate reductase, C-terminus, dapB: dihydrodipicolinate reductase
YP_003728720.1	CAG pathogenicity island protein 23 (Protein picB), CagE, TrbE, VirB component of type IV transporter system, CagE, TrbE, VirB family, component of type IV transporter system, VirB4_CagE: type IV secretion/conjugal transfer ATPase, VirB4 family
YP_003728731.1	synonyms: CAG pathogenicity island protein 13, cag13
YP_003728732.1	synonyms: CAG pathogenicity island protein 12 precursor, cag12
YP_003728734.1	VirB8 protein
YP_003728736.1	Conjugal transfer protein TrbG/VirB9/CagX
YP_003728737.1	Bacterial conjugation TrbI-like protein
YP_003728738.1	Cag pathogenicity island protein, CagZ, CagZ
YP_003728739.1	Bacterial type II secretion system protein E, Type II/IV secretion system protein, VirB11: P-type DNA transfer ATPase VirB11
YP_003728740.1	TRAG protein, TraG/TraD/virD4 family
YP_003728747.1	Chitin synthase regulatory factor 3 (Chs four homolog 1), Tetratricopeptide-like helical
YP_003728749.1	Glutamine synthetase 1 (Glutamine synthetase I) (Glutamate-ammonia ligase I) (GSI), Glutamine synthetase type I, Glutamine synthetase, catalytic domain, GlnA: glutamine synthetase, type I
YP_003728751.1	[KO:K02939]
YP_003728752.1	[KO:K01419]
YP_003728753.1	[KO:K03667]
YP_003728754.1	[KO:K03595]
YP_003728760.1	Regulator of nonsense transcripts 1 (ATP-dependent helicase RENT1) (Nonsense mRNA reducing factor 1) (NORF1) (Up-frameshift suppressor 1 homolog) (hUpf1)
YP_003728762.1	Cytotoxicity-associated immunodominant antigen (120 kDa protein) (CAG pathogenicity island protein 26), CagA exotoxin
YP_003728764.1	[KO:K01776]
YP_003728765.1	[KO:K03628]
YP_003728766.1	[KO:K02909], synonymous rpl31
YP_003728768.1	[KO:K03218], 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251 2'-O-methyltransferase), RNA methyltransferase TrmH, group 3, SpoU rRNA Methylase family, rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3
YP_003728769.1	Sialidase A precursor (Neuraminidase A)
YP_003728774.1	[KO:K01962]
YP_003728775.1	[KO:K00647]
YP_003728776.1	[KO:K02078]
YP_003728777.1	[KO:K00059], synonymous: 3-ketoacyl-[acyl-carrier protein] reductase
YP_003728778.1	[KO:K02970]
YP_003728783.1	[KO:K01778]
YP_003728784.1	orthologs: amaA; membrane protein-predicted permease
YP_003728787.1	[KO:K01255], leucyl aminopeptidase, Formerly
YP_003728788.1	DedA family protein
YP_003728789.1	[KO:K00759], synonym: APRT
YP_003728791.1	[KO:K01808]
YP_003728793.1	[KO:K03100], Obsolete functional annotation: signal peptidase I activity GO:0009004
YP_003728794.1	3.5.4.9] [KO:K00288 K01491]
YP_003728795.1	[KO:K01002]
YP_003728797.1	COG: Predicted neuraminidase (sialidase)
YP_003728799.1	[KO:K01465], GO:0004151; Molecular function: dihydroorotase activity (inferred from electronic annotation from HAMAP), GO:0008270; Molecular function: zinc ion binding (inferred from electronic annotation from HAMAP), GO:0006221; Biological process: pyrimidine nucleotide biosynthetic process (inferred from electronic annotation from HAMAP)
YP_003728802.1	[KO:K02417], aka FliY
YP_003728803.1	[KO:K01741]
YP_003728806.1	[KO:K07082]
YP_003728807.1	[KO:K00176]
YP_003728808.1	[KO:K00174]
YP_003728809.1	[KO:K00175]
YP_003728810.1	[KO:K00177], aka as korG
YP_003728811.1	Haloacid dehalogenase-like hydrolase
YP_003728815.1	KEGG definition: tumor necrosis factor alpha-inducing protein
YP_003728816.1	[KO:K03693], aka PBP-1a, PBP1
YP_003728817.1	[KO:K00652], synonys:, AONS, 8-amino-7-ketopelargonate synthase, 7-keto-8-amino-pelargonic acid synthetase, 7-KAP synthetase, L-alanine-pimelyl-CoA ligase
YP_003728818.1	synonyms: MCP, annotated as 'hylB; hemolysin secretion protein precursor (HylB)' in ORF HP0599 of strain 26695
YP_003728819.1	Phosphate import ATP-binding protein pstB (Phosphate-transporting ATPase) (ABC phosphate transporter), ABC transporter related, ABC transporter
YP_003728820.1	ABC transporter, transmembrane region, type 1
YP_003728821.1	[KO:K02406], strong homology: major flagellin subunit genes flaA_2, flaA_1 of H. hepaticus; flaG of W.succinogenes
YP_003728822.1	[KO:K07457]
YP_003728824.1	[KO:K01599], synonyms: URO-D, UPD
YP_003728825.1	homologies:, H. hepaticus HH0224
YP_003728826.1	previous names:, putative efflux transporter (H. pylori J99), membrane fusion protein (H. pzlori 26695), but so far no experimental evidence
YP_003728827.1	[KO:K03296] [TC: 2.A.6.2]
YP_003728829.1	[TC: 1.B.12]
YP_003728830.1	[KO:K01992] [TC: 3.A.1]
YP_003728831.1	[KO:K01990] [TC: 3.A.1]
YP_003728834.1	[KO:K01972], synonyms: Polydeoxyribonucleotide synthase [NAD+], lig
YP_003728835.1	[KO:K03415]
YP_003728836.1	[KO:K01876], synonyms: Aspartate-tRNA ligase, AspRS, Aspartate-tRNA ligase
YP_003728837.1	Adenylate kinase (ATP-AMP transphosphorylase), Adenylate kinase, Adenylate kinase, adk: adenylate kinases
YP_003728838.1	[KO:K07270]
YP_003728839.1	[KO:K07270]
YP_003728840.1	[KO:K01507], synonyms: Pyrophosphate phospho-hydrolase, PPase, diphosphate phosphohydrolase, pyrophosphate phosphohydrolase
YP_003728841.1	[KO:K07456], synonyms: mutSB, mutS2
YP_003728843.1	[KO:K01924], synonyms: UDP-N-acetylmuramoyl-L-alanine synthetase
YP_003728844.1	[KO:K00821], synonyms: N-succinyl-L-2,6-diaminoheptanedioate:2-oxoglutarate aminotransferase, N-succinyl-L-diaminopimelic glutamic transaminase, succinyldiaminopimelate aminotransferase, succinyldiaminopimelate transferase
YP_003728845.1	[KO:K03526], synonyms: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, (E)-4-hydroxy-3-methylbut-2-en-1-yl-diphosphate:protein- disulfide oxidoreductase (hydrating)
YP_003728846.1	[KO:K00674], synonyms: succinyl-CoA:(S)-2,3,4,5-tetrahydropyridine-2, 6-dicarboxylate N-succinyltransferase, succinyl-CoA:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, succinyl-CoA:tetrahydrodipicolinate N-succinyltransferase, tetrahydrodipicolinate N-succinyltransferase, tetrahydrodipicolinate succinylase, tetrahydrodipicolinate succinyltransferase, tetrahydropicolinate succinylase
YP_003728850.1	[KO:K03923], synonyms: MdaB
YP_003728852.1	[KO:K05927], synonyms: hydrogen-ubiquinone oxidoreductase, hydrogen:menaquinone oxidoreductase
YP_003728853.1	[KO:K05922]
YP_003728854.1	[KO:K03620]
YP_003728855.1	[KO:K03605]
YP_003728862.1	2.7.7.21] [KO:K00974], synonyms: polynucleotide adenylyltransferase, pcnB,, poly(A) polymerase, polynucleotide adenylyltransferase, NTP polymerase, RNA adenylating enzyme
YP_003728864.1	[KO:K00020], synonyms: 3-hydroxyacid dehydrogenase
YP_003728865.1	synonyms: NADPH-flavin oxidoreductase
YP_003728866.1	[KO:K01885], synonyms: GlutamylGlutaminyl-tRNA synthetase, GluGlnRS, Glutamyl-tRNA synthetase 2, Glutamate-tRNA ligase 2, GluRS 2
YP_003728869.1	[KO:K00963]
YP_003728871.1	[KO:K00790], synonyms: murZ, Enoylpyruvate transferase, UDP-N-acetylglucosamine enolpyruvyl transferase, EPT
YP_003728872.1	[KO:K01744], synonyms: Aspartase, Fumaric aminase, L-aspartase, L-aspartate ammonia-lyase (fumarate-forming)
YP_003728873.1	Annotated as DNA polymerase bacteriophage-type in some databases, but the original gene produces a protein of 1025 AA
YP_003728875.1	Alpha-(1,3)-fucosyltransferase 11; Galactoside 3-L-fucosyltransferase 11; Fucosyltransferase 11; FucT-XI; Fuc-TXI;, Glycosyl transferase, family 10
YP_003728876.1	[KO:K01079], synonyms: O-phosphoserine phosphohydrolase
YP_003728877.1	[KO:K02217], synonyms: nonheme iron-containing ferritin (pfr)
YP_003728879.1	[KO:K07277], synonyms: protective surface antigen D15
YP_003728882.1	[KO:K02434], synonymous function: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, synonyms: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, supports both:
YP_003728885.1	[KO:K03469]
YP_003728886.1	[KO:K03685], synonyms: ribonuclease III, RNase III
YP_003728887.1	[KO:K01736], synonyms: 5-enolpyruvylshikimate-3-phosphate phospholyase, 5-O-(1-carboxyvinyl)-3-phosphoshikimate phosphate-lyase, 5-O-(1-carboxyvinyl)-3-phosphoshikimate phosphate-lyase
YP_003728889.1	[KO:K02495], synonyms: hemZ, coproporphyrinogenase, coprogen oxidase, coproporphyrinogen III oxidase, coproporphyrinogen-III:S-adenosyl-L-methionine oxidoreductase (decarboxylating)
YP_003728892.1	helicase domain-like protein
YP_003728893.1	NAD-dependent deacetylase (Regulatory protein SIR2 homolog)
YP_003728894.1	Cytokine, IL-1-like
YP_003728895.1	homology: H. pylori 26695 -> omp14
YP_003728897.1	[KO:K00812], synonyms: Solute-binding signature and mitochondrial signature protein, aspartate aminotransferase
YP_003728900.1	[KO:K00567], synonyms: methylated-DNA-protein-cysteine methyltransferase, 6-O-methylguanine-DNA methyltransferase, DNA-6-O-methylguanine:protein-L-cysteine S-methyltransferase, MGMT, ada, O-6-methylguanine-DNA-alkyltransferase
YP_003728901.1	[KO:K07090]
YP_003728902.1	homology with still uncharacterized protein from H. pylori 26695: 'Lipopolysaccharide biosynthesis protein '
YP_003728903.1	[KO:K00525], synonyms: 2'-deoxyribonucleoside-diphosphate:oxidized-thioredoxin 2'-oxidoreductase, 2'-deoxyribonucleoside-diphosphate:thioredoxin-disulfide 2'-oxidoreductase, nucleoside diphosphate reductase, ribonucleoside 5'-diphosphate reductase
YP_003728906.1	2.7.7.23] [KO:K04042 K00972], synonyms: UDP-N-acetylglucosamine diphosphorylase, GlmU uridylyltransferase, UDP-N-acetylglucosamine pyrophosphorylase, glucosamine-1-phosphate N-acetyltransferase, acetyl-CoA:alpha-D-glucosamine-1-phosphate N-acetyltransferase, acetyl-CoA:D-glucosamine-1-phosphate N-acetyltransferase
YP_003728907.1	[KO:K02419]
YP_003728908.1	[KO:K02014] [TC:1.B.14]
YP_003728909.1	[KO:K04759] [TC:9.A.8]
YP_003728910.1	[KO:K07501]
YP_003728911.1	[KO:K00626], previous name: fadA replaced with canonical name from KEGG orthology database, synonyms: Acetyl coenzyme A acetyltransferase (Thiolase) (FadA)
YP_003728912.1	[KO:K01028], synonyms: succinyl CoA:3-oxoacid CoA-transferase
YP_003728913.1	[KO:K01029], synonyms: succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, Succinyl CoA:3-oxoacid CoA-transferase, OXCT B
YP_003728914.1	[KO:K02106] [TC:2.A.73.1.1]
YP_003728916.1	5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase), Hydantoinaseoxoprolinase, N-terminal, Hydantoinase/oxoprolinase N-terminal region
YP_003728917.1	5-oxoprolinase (5-oxo-L-prolinase) (Pyroglutamase) (5-OPase), Hydantoinase/oxoprolinase, Hydantoinase/oxoprolinase
YP_003728918.1	[KO:K10854], redesignated as acetone carboxylase, see, Sluis et al.; Biochemical, Molecular, and Genetic Analyses of the Acetone Carboxylases from Xanthobacter autotrophicus Strain Py2 and Rhodobacter capsulatus Strain B10; Journal of Bacteriology, June 2002, p. 2969-2977, Vol. 184, No. 11
YP_003728922.1	[KO:K00901]
YP_003728923.1	[KO:K02469]
YP_003728925.1	[KO:K02481]
YP_003728930.1	[KO:K03701]
YP_003728933.1	[KO:K03438], synonyms: S-adenosyl-L-methionine-dependent methyltransferase
YP_003728936.1	Outer membrane protein, Helicobacter, Helicobacter outer membrane protein
YP_003728937.1	[KO:K07023]
YP_003728939.1	Filamentation induced by cAMP protein Fic
YP_003728941.1	[KO:K03092], synonyms: SIG54
YP_003728942.1	[KO:K06861], annotated as ABC transporter, ATP-binding protein in H. pylori 26695
YP_003728943.1	[KO:K06925]
YP_003728944.1	[KO:K02343], synonyms: DNA polymerase III subunits gamma and tau, DPO3G, deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
YP_003728945.1	[KO:K06895]
YP_003728948.1	Outer membrane protein, Helicobacter, Helicobacter outer membrane protein
YP_003728949.1	[KO:K01424], synonyms: L-asparaginase II, ansB, L-ASNase, L-asparagine amidohydrolase
YP_003728950.1	[KO:K07791] [TC:2.A.13.1], synonyms: anaerobic C4-dicarboxylate transporter
YP_003728951.1	annotated as outer membrane protein omp17 in H. pylori 26695
YP_003728953.1	[KO:K05540], annotated as transcriptional regulator, putative in H. pylori 26695
YP_003728954.1	[KO:K04075], annotated as tRNA(Ile)-lysidine synthase in UniProt
YP_003728958.1	Dynactin subunit 1 (150 kDa dynein-associated polypeptide) (DP-150) (DAP-150) (p150-glued)
YP_003728963.1	[KO:K00769], synonyms: xanthine guanine phosphoribosyl transferase, 5-phospho-alpha-D-ribose-1-diphosphate:xanthine phospho-D-ribosyltransferase, Xan phosphoribosyltransferase, xanthine-guanine phosphoribosyltransferase, XMP pyrophosphorylase, xanthylate pyrophosphorylase, XMP:diphosphate 5-phospho-alpha-D-ribosyltransferase
YP_003728964.1	[KO:K00839]
YP_003728965.1	[KO:K01095], synonyms: PGP phosphatase, phosphatidylglycerol phosphatase, phosphatidylglycerophosphate phosphohydrolase
YP_003728966.1	[KO:K01921], synonyms: D-alanyl-alanine synthetase A, D-alanylalanine synthetase, D-Ala-D-Ala ligase, alanine:alanine ligase (ADP-forming), D-Ala-D-Ala synthetase, D-alanylalanine synthetase
YP_003728967.1	annotated as 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase in H. pylori 26695
YP_003728968.1	[KO:K01929], synonyms: UDP-MurNac-pentapeptide presynthetase
YP_003728970.1	[KO:K00948], synonyms: ribose-phosphate pyrophosphokinase, RPPK, Phosphoribosyl pyrophosphate synthetase, P-Rib-PP synthetase, PRPP synthetase, 5-phosphoribosyl-1-pyrophosphate synthetase, ATP:D-ribose-5-phosphate diphosphotransferase, 5-phosphoribose pyrophosphorylase, phosphoribosyl diphosphate synthetase, phosphoribosylpyrophosphate synthetase, PPRibP synthetase, PRPP, ribophosphate pyrophosphokinase, ribose-5-phosphate pyrophosphokinase
YP_003728971.1	[KO:K05837], synonyms: rodA, mrdB
YP_003728972.1	[KO:K06946], only partial conservation
YP_003728973.1	[KO:K06180], synonyms: RNA-uridine isomerase, RNA pseudouridylate synthase
YP_003728974.1	[KO:K06882]
YP_003728975.1	[KO:K03439], synonyms: tRNA (guanine-N(7))-methyltransferase, tRNA(m7G46)-methyltransferase, N7-methylguanine methylase, S-adenosyl-L-methionine:tRNA (guanine-7-N-)-methyltransferase, transfer ribonucleate guanine 7-methyltransferase, tRNA guanine 7-methyltransferase, yggH
YP_003728976.1	[KO:K09812] [TC:3.A.1 3.A.5], synonyms: cell division protein, ABC.FTS.A
YP_003728977.1	[KO:K09811] [TC:3.A.1], synonyms: cell division membrane protein, ABC.FTS.P
YP_003728979.1	[KO:K06603], synonyms: polar flagellin
YP_003728980.1	[KO:K02407], synonyms: flagellar capping protein, HAP2, filament cap protein, flagellar cap protein
YP_003728981.1	[KO:K02422]
YP_003728983.1	annotated as molybdopterin biosynthesis protein in H. pylori 26695
YP_003728985.1	annotated as beta-alanine synthetase homolog in H. pylori 26695
YP_003728986.1	[KO:K07084]
YP_003728988.1	[KO:K06950 K07254], annotated as 2',3'-cyclic-nucleotide 2'-phosphodiesterase in H. pylori J99
YP_003728989.1	[KO:K01934], synonyms: 5,10-methenyltetrahydrofolate synthetase, 5-formyltetrahydrofolate cyclo-ligase (ADP-forming), 5-Formyltetrahydrofolate cyclodehydrase, formyltetrahydrofolic cyclodehydrase, methenyl-THF synthetase
YP_003728991.1	[KO:K03110], synonyms: cell division protein, SRPR
YP_003728992.1	Protein of unknown function UPF0153, Uncharacterised protein family (UPF0153)
YP_003728998.1	[KO:K03639]
YP_003728999.1	[KO:K03752]
YP_003729000.1	[KO:K02401]
YP_003729002.1	[KO:K01448], synonyms: acetylmuramoyl-alanine amidase, acetylmuramyl-alanine amidase, murein hydrolase, N-acetylmuramic acid L-alanine amidase, N-acetylmuramylalanine amidase, peptidoglycan amidohydrolase
YP_003729003.1	[KO:K00459], synonyms: 2-nitropropane:oxygen 2-oxidoreductase, 2-NPD, nitroalkane oxidase
YP_003729004.1	[KO:K01866], synonyms: L-tyrosine-tRNA(Tyr) ligase (AMP-forming), L-tyrosine-tRNATyr ligase (AMP-forming), tyrosyl-transfer RNA synthetase, tyrosyl-tRNA ligase, tyrosyl-tRNA synthetase, tyrosine translase, TyrRS
YP_003729005.1	[KO:K01139], synonyms: penta-phosphate guanosine-3'-pyrophosphohydrolase, (ppGpp)ase, guanosine-3',5'-bis(diphosphate) 3'-diphosphohydrolase, guanosine-3',5'-bis(diphosphate) 3'-pyrophosphatase, penta-phosphate guanosine-3'-diphosphohydrolase, PpGpp phosphohydrolase, PpGpp-3'-pyrophosphohydrolase
YP_003729006.1	[KO:K03060], synonyms: deoxyribonucleic acid-dependent ribonucleic acid polymerase, DNA-dependent ribonucleate nucleotidyltransferase, nucleoside-triphosphate:RNA nucleotidyltransferase (DNA-directed), RNA nucleotidyltransferase (DNA-directed), RNAP omega subunit, Transcriptase subunit omega
YP_003729007.1	[KO:K00947], synonyms: UK, uridine monophosphate kinase, UMP kinase, UMPK
YP_003729008.1	[KO:K07081]
YP_003729009.1	[KO:K01682], synonyms: cis-aconitase, citrate(isocitrate) hydro-lyase (cis-aconitate-forming), citrate(isocitrate) hydro-lyase
YP_003729014.1	[KO:K03634]
YP_003729015.1	[KO:K03070] [TC:3.A.5], synonyms: azi, div, preprotein translocase subunit SecA
YP_003729016.1	[KO:K02004] [TC:3.A.1], classified as ABC transporter in KEGG, synonyms: ABC.CD.P
YP_003729019.1	[KO:K01154], annotated as anti-codon nuclease masking agent (PrrB) in H. pylori 26695, synonyms: adenosine triphosphate-dependent deoxyribonuclease, ATP-dependent DNase, deoxyribonuclease (adenosine triphosphate-hydrolyzing), deoxyribonuclease (ATP-and S-adenosyl-L-methionine-dependent), type I restriction enzyme, type I site-specific deoxyribonuclease
YP_003729020.1	3.6.3.5] [KO:K01532 K01534] [TC:3.A.3.6], contains: Zn2+-exporting ATPase, zntA; Cd2+-exporting ATPase, cadA, synonyms: ATP phosphohydrolase (Cd2+-exporting), ATP phosphohydrolase (Zn2+-exporting), P1B-type ATPase, zinc exporting ATPase, Zn(2+)-exporting ATPase, zinc-translocating P-type ATPase
YP_003729021.1	[KO:K07391], annotated as sigma-54 interacting protein in H. pylori 26695, synonyms:
YP_003729022.1	[KO:K01462], synonyms: polypeptide deformylase, PDF, formyl-L-methionyl peptide amidohydrolase
YP_003729023.1	[KO:K01358], synonyms: ATP-dependent Clp protease proteolytic subunit, endopeptidase Clp
YP_003729024.1	[KO:K03545], synonyms: TF
YP_003729025.1	annotated as Outer membrane protein (Omp18) in H. pylori 26695
YP_003729026.1	synonyms: N-acetylneuraminyllactose-binding fibrillar hemagglutinin receptor-binding subunit, NLBH, flagellar sheath adhesin
YP_003729027.1	[KO:K03637]
YP_003729028.1	[KO:K03831], synonyms: molybdenum cofactor biosynthesis protein, mogA
YP_003729029.1	[KO:K03635], synonyms: molybdopterin converting factor, subunit 2, molybdopterin synthase subunit 2, MPT synthase subunit 2, molybdenum cofactor biosynthesis protein E, molybdopterin-converting factor large subunit
YP_003729030.1	[KO:K03636], synonyms: molybdopterin converting factor, subunit 1
YP_003729031.1	[KO:K01497], synonyms: GTP 7,8-8,9-dihydrolase (diphosphate-forming), GTP-8-formylhydrolase, GTP cyclohydrolase-2
YP_003729033.1	4.1.99.12] [KO:K01497 K02858], synonyms: GTP 7,8-8,9-dihydrolase (diphosphate-forming), GTP-8-formylhydrolase, DHBP synthase
YP_003729034.1	[KO:K07270], annotated as lipooligosaccharide 5G8 epitope biosynthesis-associated protein in H. pylori 26695
YP_003729035.1	[KO:K07043]
YP_003729036.1	[KO:K02014] [TC:1.B.14], annotated as iron(III) dicitrate transport protein in H. pylori 26695, synonyms: ABC.FEV.OM
YP_003729037.1	[KO:K00997], synonyms: 4'-phosphopantetheinyl transferase, holo-ACP synthase, acyl carrier protein holoprotein (holo-ACP) synthetase, alpha-aminoadipate reductase phosphopantetheinyl transferase, CoA-[4'-phosphopantetheine]:apo-acyl-carrier-protein 4'-pantetheinephosphotransferase, CoA:apo-acyl-carrier-protein pantetheinephosphotransferase, coenzyme A:fatty acid synthetase apoenzyme 4'-phosphopantetheine transferase, P-pant, phosphopantetheinyltransferase, PPTase
YP_003729038.1	[KO:K02415], synonyms: flagellar basal body-associated protein FliL
YP_003729039.1	[KO:K00599]
YP_003729043.1	[KO:K03148], annotated as
YP_003729044.1	[KO:K02556] [TC:1.A.30.1], synonyms: flagellar motor protein MotA, motility protein A
YP_003729045.1	[KO:K02557] [TC:1.A.30.1], synonyms: flagellar motor protein MotB
YP_003729047.1	[KO:K05846 K05845] [TC:3.A.1.12], synonyms: ABC.BCP1.P, osmoprotectant transport system permease protein, ABC.BCP1.S, osmoprotectant transport system substrate-binding protein
YP_003729048.1	[KO:K02000] [TC:3.A.1.12], synonyms: ABC.BCP.A, osmoprotection protein, ATP phosphohydrolase (quaternary-amine-importing), quaternary amine uptake transporter, quaternary-amine-transporting ATPase
YP_003729051.1	[KO:K03703], synonyms: UvrABC system protein C
YP_003729052.1	[KO:K00003], synonyms: metL, HDH
YP_003729053.1	[KO:K07460], synonyms: UPF0102
YP_003729054.1	[KO:K03671], synonyms: thioredoxin, txn1
YP_003729055.1	[KO:K00384], synonyms: NADP-thioredoxin reductase, NADPH2:oxidized thioredoxin oxidoreductase, thioredoxin disulfide reductase, thioredoxin:NADP+ oxidoreductase, TRXR
YP_003729056.1	[KO:K07270], synonyms: lipooligosaccharide 5G8 epitope biosynthesis-associated protein
YP_003729057.1	annotated as ss-DNA binding protein 12RNP2 precursor in H. pylori 26695
YP_003729058.1	[KO:K02108] [TC:3.A.2.1], synonyms: ATPF0A, F0F1 ATP synthase subunit A, F-ATPase protein 6
YP_003729059.1	[KO:K00088], synonyms: inositol-5-monophosphate dehydrogenase, IMP oxidoreductase, IMP:NAD+ oxidoreductase, inosine 5'-monophosphate dehydrogenase, inosine-5'-phosphate dehydrogenase, IMPDH, IMPD
YP_003729060.1	6.3.5.7] [KO:K02433], synonyms: glutamyl-tRNA(Gln) amidotransferase, glutamyl-tRNAGln:L-glutamine amido-ligase (ADP-forming), Glu-tRNAGln:L-glutamine amido-ligase (ADP-forming), glutaminyl-tRNA synthase (glutamine-hydrolysing), Asp-tRNAAsn:L-glutamine amido-ligase (ADP-forming), asparaginyl-tRNA synthase (glutamine-hydrolysing), aspartyl-tRNAAsn:L-glutamine amido-ligase (ADP-forming)
YP_003729061.1	[KO:K00859], synonyms: 3'-dephospho-CoA kinase, ATP:dephospho-CoA 3'-phosphotransferase, dephosphocoenzyme A kinase (phosphorylating), dephosphocoenzyme A kinase
YP_003729062.1	[KO:K00797], synonyms: SRM, putrescine aminopropyltransferase, aminopropyltransferase, PAPT, SPDSY, S-adenosylmethioninamine:putrescine 3-aminopropyltransferase, spermidine synthetase
YP_003729065.1	[KO:K03977], synonyms: yphC, yfgK
YP_003729066.1	annotated as histone-like DNA-binding protein HU (hup) in H. pylori 26695
YP_003729068.1	[KO:K09860]
YP_003729070.1	annotated as outer membrane protein P1 in H. pylori 26695
YP_003729072.1	6.3.2.5] [KO:K01922], annotated as pantothenate metabolism flavoprotein in H. pylori 26695, synonyms: phosphopantothenate-cysteine ligase, phosphopantothenoylcysteine decarboxylase, (R)-4'-phosphopantothenate:L-cysteine ligase, phosphopantothenate-cysteine ligase, phosphopantothenoylcysteine synthetase, N-((R)-4'-phosphopantothenoyl)-L-cysteine carboxy-lyase, 4-phosphopantotheoylcysteine decarboxylase, 4-phosphopantothenoyl-L-cysteine decarboxylase, N-[(R)-4'-phosphopantothenoyl]-L-cysteine carboxy-lyase (pantotheine-4'-phosphate-forming), N-[(R)-4'-phosphopantothenoyl]-L-cysteine carboxy-lyase, PPC-decarboxylase
YP_003729074.1	[KO:K00788], annotated as thiamin phosphate pyrophosphorylase/hyroxyethylthiazole kinase (ThiB) in H. pylori 26695, synonyms: TMP pyrophosphorylase, TMP-PPase, Thiamine-phosphate synthase, 2-methyl-4-amino-5-hydroxymethylpyrimidine-diphosphate:4- methyl-5-(2-phosphoethyl)thiazole 2-methyl-4-aminopyrimidine-5-methenyltransferase, thiamin-phosphate pyrophosphorylase, TMP diphosphorylase, TMP-PPase, thiamine-phosphate diphosphorylase
YP_003729075.1	2.7.4.7] [KO:K00877 K00941], synonyms: hydroxymethylpyrimidine kinase, phosphomethylpyrimidine kinase, thiD, ATP:4-amino-5-hydroxymethyl-2-methylpyrimidine 5-phosphotransferase, hydroxymethylpyrimidine kinase (phosphorylating), ATP:4-amino-2-methyl-5-phosphomethylpyrimidine phosphotransferase, hydroxymethylpyrimidine phosphokinase, HMP-phosphate kinase, HMP-P kinase
YP_003729076.1	[KO:K00878], synonyms: 4-methyl-5-beta-hydroxyethylthiazole kinase, Thz kinase, TH kinase, 4-methyl-5-(beta-hydroxyethyl)thiazole kinase, ATP:4-methyl-5-(2-hydroxyethyl)thiazole 2-phosphotransferase, hydroxyethylthiazole kinase (phosphorylating)
YP_003729077.1	[KO:K01153], synonyms: type I restriction enzyme R protein, adenosine triphosphate-dependent deoxyribonuclease, ATP-dependent DNase, deoxyribonuclease (adenosine triphosphate-hydrolyzing), deoxyribonuclease (ATP-and S-adenosyl-L-methionine-dependent), type I site-specific deoxyribonuclease
YP_003729078.1	[KO:K01154]
YP_003729079.1	[KO:K03427], synonyms: N-6 adenine-specific DNA methylase
YP_003729080.1	[KO:K00558], synonyms: dnmt, S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase, deoxyribonucleic (cytosine-5-)-methyltransferase, cytosine-specific methyltransferase
YP_003729081.1	Type II restriction enzyme HaeIII (Endonuclease HaeIII) (R.HaeIII)
YP_003729082.1	annotated as conserved hypothetical integral membrane protein in H. pylori 26695
YP_003729083.1	[KO:K09805]
YP_003729084.1	annotated as ABC transporter, ATP-binding protein in H. pylori
YP_003729085.1	[KO:K00364], synonyms: guanosine 5'-monophosphate oxidoreductase, guanosine monophosphate reductase, inosine-5'-phosphate:NADP+ oxidoreductase, NADPH:guanosine-5'-phosphate oxidoreductase (deaminating)
YP_003729087.1	[KO:K03271], synonyms: sedoheptulose 7-phosphate isomerase
YP_003729088.1	2.7.7.-] [KO:K03272], synonyms: rfaE, waaE, contains: D-beta-D-heptose 7-phosphate kinase, D-beta-D-heptose 1-phosphate adenosyltransferase
YP_003729089.1	[KO:K03274], synonyms: ADP-L-glycero-D-manno-heptose 6-epimerase, ADPglyceromanno-heptose 6-epimerase
YP_003729090.1	[KO:K03273], synonyms: D,D-heptose 1,7-bisphosphate phosphatase
YP_003729091.1	[KO:K09792]
YP_003729092.1	[KO:K03525], synonyms: pantothenic acid kinase, panK-III, coaA
YP_003729095.1	[KO:K01520], synonyms: deoxyuridine 5'-triphosphate nucleotidohydrolase, dUTPase, dUTP pyrophosphatase, desoxyuridine 5'-triphosphatase, dUTP nucleotidohydrolase
YP_003729096.1	[KO:K03624], synonyms: transcript cleavage factor greA
YP_003729097.1	[KO:K00748], synonyms: UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine:2, 3-bis-(3-hydroxytetradecanoyl)-beta-D-glucosaminyl-1- phosphate 2,3-bis(3-hydroxytetradecanoyl)-glucosaminyltransferase
YP_003729099.1	[KO:K04651], synonyms: hydrogenase/urease nickel incorporation protein hypA
YP_003729100.1	[KO:K02390]
YP_003729102.1	CDP-diacylglycerol pyrophosphatase (CDP-diacylglycerol phosphatidylhydrolase) (CDP-diglyceride hydrolase), CDP-diacylglycerol pyrophosphatase, bacterial
YP_003729103.1	CDP-diacylglycerol pyrophosphatase (CDP-diacylglycerol phosphatidylhydrolase) (CDP-diglyceride hydrolase), CDP-diacylglycerol pyrophosphatase, bacterial, CDP-diacylglycerol pyrophosphatase, cdh: CDP-diacylglycerol pyrophosphatase
YP_003729105.1	[KO:K06193], annotated as alkylphosphonate uptake protein in H. pylori 26695
YP_003729108.1	[KO:K03781], synonyms: katE, cat
YP_003729109.1	[KO:K02014] [TC:1.B.14], synonyms: iron-regulated outer membrane protein, ABC.FEV.OM
YP_003729110.1	[KO:K01159], synonyms: holliday junction resolvase, crossover junction endoribonuclease, cruciform-cutting endonuclease, endodeoxyribonuclease, Hje endonuclease, holliday junction nuclease
YP_003729115.1	annotated as outer membrane protein HofD in H. pylori HPAG1
YP_003729117.1	[KO:K00429], synonyms: caperase, catalase-peroxidase, equilase, hydrogen-peroxide:hydrogen-peroxide oxidoreductase
YP_003729119.1	[KO:K00558], synonyms: type II DNA modification (methyltransferase), synonyms: dnmt, deoxyribonucleic (cytosine-5-)-methyltransferase, S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase, cytosine-specific methyltransferase
YP_003729121.1	D12 class N6 adenine-specific DNA methyltransferase
YP_003729122.1	D12 class N6 adenine-specific DNA methyltransferase
YP_003729123.1	[KO:K06207], synonyms: bipA, annotated as GTP-binding protein TypA/BipA homolog in H. pylori 26695
YP_003729124.1	[KO:K00571], synonyms: N-6 adenine-specific DNA methylase,, adenine specific DNA methyltransferase (VSPIM)
YP_003729125.1	annotated as outer membrane protein (Omp22) in H. pylori 26695
YP_003729127.1	[KO:K01885], synonyms: glutamyl-tRNA synthetase 1, glutamate-tRNA ligase 1, GluRS 1, gltX1, glutamyl-transfer ribonucleate synthetase, L-glutamate:tRNAGlu ligase (AMP-forming), glutamic acid translase
YP_003729128.1	[KO:K02017] [TC:3.A.1.8], annotated as molybdenum ABC transporter, ATP-binding protein (ModD) in H. pylori 26695, synonyms: ABC.MO.A, modD, ATP phosphohydrolase (molybdate-importing), molybdate-transporting ATPase
YP_003729129.1	[KO:K02018] [TC:3.A.1.8], annotated as molybdenum ABC transporter, permease protein in H. pylori 26695, synonyms: ABC.MO.P
YP_003729130.1	[KO:K02020] [TC:3.A.1.8], annotated as molybdenum ABC transporter, periplasmic molybdate-binding protein in H. pylori 26695, syonyms: ABC.MO.S
YP_003729132.1	annotated as outer membrane protein (Omp11) in H. pylori 26695
YP_003729133.1	[KO:K03455] [TC:2.A.37], synonyms: TC.KEF, monovalent cation:H+ antiporter-2, CPA2 family
YP_003729140.1	Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N terminus, Type I restriction enzyme R protein N terminus (HSDR_N)
YP_003729142.1	[KO:K01153]
YP_003729143.1	[KO:K03427], synonyms: N-6 adenine-specific DNA methylase
YP_003729144.1	putative type I restriction enzyme HindVIIP specificity protein (S protein) (S.HindVIIP), Restriction endonuclease, type I, S subunit, EcoBI
YP_003729147.1	[KO:K00937], synonyms: polyphosphoric acid kinase, ATP-polyphosphate phosphotransferase
YP_003729148.1	[KO:K00226], synonyms: dihydroorotate oxidase, DHOdehase, DHODase, DHOD, (S)-dihydroorotate:oxygen oxidoreductase, 4,5-L-dihydroorotate:oxygen oxidoreductase
YP_003729149.1	[KO:K01423], annotated as protease in H. pylori 26695
YP_003729150.1	[KO:K01714], synonyms: dihydrodipicolinate synthetase, L-aspartate-4-semialdehyde hydro-lyase (adding pyruvate and cyclizing), DHDPS
YP_003729151.1	[KO:K00076], synonyms: 7alpha-hydroxysteroid:NAD+ 7-oxidoreductase
YP_003729153.1	[KO:K00995], synonyms: phosphatidylglycerophosphate synthase, 3-phosphatidyl-1'-glycerol-3'-phosphate synthase, cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):sn-glycerol-3-phosphate phosphatidyltransferase, sn-glycerol-3-phosphate phosphatidyltransferase
YP_003729154.1	[KO:K03293] [TC:2.A.3.1], synonyms: TC.AAT, amino acid transporter, AAT family
YP_003729155.1	[KO:K04771], synonyms: degP
YP_003729156.1	4.6.1.12] [KO:K00991 K01770], synonyms: bifunctional enzyme ispD/ispF, 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase, CTP:2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, MEP cytidylyltransferase, 2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol CMP-lyase (cyclizing; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate-forming)
YP_003729157.1	annotated as response regulator in H. pylori 26695
YP_003729161.1	Helix-hairpin-helix motif, class 2
YP_003729163.1	[KO:K05516], synonyms: curved DNA-binding protein
YP_003729164.1	synonyms: putative heat shock protein
YP_003729165.1	[KO:K07478], annotated as Conserved hypothetical helicase-like protein in H. pylori 26695, synonyms: putative ATPase, ycaJ
YP_003729166.1	[KO:K03711], synonyms: ferric uptake regulation protein
YP_003729169.1	[KO:K02417], synonyms: fliY
YP_003729170.1	[KO:K02416]
YP_003729171.1	[KO:K02405], synonyms: flagellar biosynthesis sigma factor, alternative transcription initiation factor, sigma-F
YP_003729173.1	[KO:K04562], synonyms: ylxH, fleN
YP_003729174.1	[KO:K02404], synonyms: flagellar biosynthesis regulator FlhF, flagella-associated GTP-binding protein
YP_003729175.1	[KO:K00950], synonyms: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK, 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, PPPK, ATP:2-amino-4-hydroxy-6-hydroxymethyl-7, 8-dihydropteridine 6'-diphosphotransferase, 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, H2-pteridine-CH2OH pyrophosphokinase
YP_003729176.1	[KO:K01262]
YP_003729177.1	[KO:K03786], synonyms: qutE, 3-dehydroquinase, type II DHQase
YP_003729179.1	[KO:K02956], synonyms: RP-S15, 30S ribosomal protein S15, rps15
YP_003729180.1	[KO:K02400], synonyms: flbA
YP_003729181.1	[KO:K07097]
YP_003729182.1	[KO:K02483], synonyms: HD.OMPR.R
YP_003729183.1	[KO:K07098], annotated as uncharacterized metallophosphoesterase HP_1044 in H. pylori 26695
YP_003729184.1	[KO:K01895], synonyms: acs, acoE, acetyl-coenzyme A synthetase, acetate-CoA ligase, acyl-activating enzyme, short chain fatty acyl-CoA synthetase, short-chain acyl-coenzyme A synthetase, acetyl CoA ligase, acetic thiokinase, acetate:CoA ligase (AMP-forming)
YP_003729185.1	[KO:K09748], synonyms: yhbC, UPF0090
YP_003729186.1	[KO:K02834]
YP_003729187.1	[KO:K02519], synonyms: IF-2
YP_003729190.1	[KO:K00872], synonyms: ATP:L-homoserine O-phosphotransferase, homoserine kinase (phosphorylating), HSK, HK
YP_003729192.1	[KO:K02535], synonyms: envA, UDP-3-O-acyl-GlcNAc deacetylase
YP_003729193.1	Septum formation inhibitor MinC, C-terminal, Septum formation inhibitor MinC, C-terminal domain
YP_003729198.1	[KO:K00606], synonyms: 5,10-methylene tetrahydrofolate:alpha-ketoisovalerate hydroxymethyltransferase, 5,10-methylenetetrahydrofolate:3-methyl-2-oxobutanoate hydroxymethyltransferase, alpha-ketoisovalerate hydroxymethyltransferase, dehydropantoate hydroxymethyltransferase, ketopantoate hydroxymethyltransferase, KPHMT
YP_003729199.1	[KO:K03551]
YP_003729200.1	[KO:K03117] [TC:2.A.64]
YP_003729201.1	[KO:K03118] [TC:2.A.64]
YP_003729202.1	[KO:K07568], synonyms: queuosine biosynthesis protein queA
YP_003729203.1	[KO:K03501], synonyms: glucose inhibited division protein B, 16S rRNA 7-methylguanosine methyltransferase, 16S rRNA m7G methyltransferase, gidB
YP_003729207.1	[KO:K03413]
YP_003729208.1	[KO:K02687], synonyms: L11 Mtase, hsm
YP_003729209.1	[KO:K03798], synonyms: hflB
YP_003729212.1	[KO:K00998], synonyms: CDP-diacylglycerol-serine O-phosphatidyltransferase, cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase, cytidine diphosphoglyceride-serine O-phosphatidyltransferase, CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase, CDPdiglyceride-serine O-phosphatidyltransferase
YP_003729213.1	[KO:K01533] [TC:3.A.3.5], synonyms: copper-transporting ATPase, P-type, ATP7, ATP phosphohydrolase (Cu2+-exporting)
YP_003729214.1	synonyms: copper ion binding protein
YP_003729217.1	[KO:K07241] [TC:2.A.52.1]
YP_003729219.1	[KO:K06926]
YP_003729220.1	[KO:K07449]
YP_003729222.1	[KO:K06148] [TC:3.A.1.106], annotated as multidrug resistance protein in H. pylori 26695, synonyms: ABCB-BAC.MSBA
YP_003729224.1	[KO:K00609], synonyms: aspartate carbamoyltransferase catalytic subunit, aspartate transcarbamylase, ATCase
YP_003729226.1	[KO:K06442]
YP_003729227.1	2.7.7.2] [KO:K00861 K00953], synonyms: riboflavin biosynthesis regulatory protein
YP_003729228.1	[KO:K00615]
YP_003729230.1	[KO:K03466] [TC:3.A.12], synonyms: spoIIIE, DNA translocase
YP_003729231.1	[KO:K03761] [TC:2.A.1.6]
YP_003729232.1	[KO:K02392]
YP_003729237.1	[KO:K03596]
YP_003729238.1	[KO:K01662], synonyms: 1-deoxyxylulose-5-phosphate synthase, DXP synthase, DXPS
YP_003729239.1	[KO:K02411], synonyms: flagellar export protein
YP_003729240.1	[KO:K02410]
YP_003729241.1	[KO:K02409], synonyms: flagellar MS-ring protein
YP_003729244.1	[KO:K01937], synonyms: UTP-ammonia ligase, CTP synthetase, cytidine triphosphate synthetase, uridine triphosphate aminase
YP_003729245.1	[KO:K07462]
YP_003729246.1	[KO:K06180], synonyms: RNA-uridine isomerase, RNA pseudouridylate synthase
YP_003729250.1	Tetratricopeptide-like helical
YP_003729251.1	[KO:K07447]
YP_003729252.1	[KO:K04096], synonyms: smf
YP_003729253.1	[KO:K03608]
YP_003729254.1	[KO:K03609], synonyms: cell division inhibitor
YP_003729255.1	[KO:K00053], synonyms: acetohydroxy-acid isomeroreductase, alpha-keto-beta-hydroxylacil reductoisomerase, (R)-2,3-dihydroxy-3-methylbutanoate:NADP+ oxidoreductase (isomerizing), dihydroxyisovalerate dehydrogenase (isomerizing)
YP_003729256.1	[KO:K01950], synonyms: NAD+ synthase (glutamine-hydrolyzing)
YP_003729257.1	Tetraacyldisaccharide-1-P 4'-kinase, Tetraacyldisaccharide-1-P 4'-kinase, lpxK: tetraacyldisaccharide 4'-kinase
YP_003729258.1	Acylneuraminate cytidylyltransferase
YP_003729259.1	N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialic acid synthetase), Acylneuraminate cytidylyltransferase, Cytidylyltransferase
YP_003729260.1	[KO:K02393], synonyms: basal body L-ring protein
YP_003729261.1	annotated as outer membrane protein (Omp10) in H. pylori 26695
YP_003729262.1	annotated as membrane bound endonuclease in H. pylori 26695
YP_003729264.1	annotated as poly E-rich protein in H. pylori 26695
YP_003729265.1	[KO:K00942], synonyms: guk1, 5'-GMP kinase, ATP:(d)GMP phosphotransferase, guanosine monophosphate kinase
YP_003729266.1	[KO:K03116] [TC:2.A.64]
YP_003729267.1	[KO:K01887], synonyms: arginine-tRNA ligase, ArgRS
YP_003729268.1	[KO:K07226]
YP_003729270.1	annotated as nitrite extrusion protein in H. pylori 26695
YP_003729277.1	[KO:K01845], synonyms: GSA, glutamate-1-semialdehyde aminotransferase, GSA-AT, (S)-4-amino-5-oxopentanoate 4,5-aminomutase
YP_003729280.1	[KO:K03979], synonyms: obgE, yhbZ, cgtA
YP_003729281.1	[KO:K02032] [TC:3.A.1.5.2], synonyms: peptide/nickel transport system ATP-binding protein, ABC.PE.A1
YP_003729282.1	Phosphate import ATP-binding protein pstB (Phosphate-transporting ATPase) (ABC phosphate transporter), ABC transporter related, ABC transporter, nickel_nikD: nickel import ATP-binding protein NikD
YP_003729283.1	[KO:K02034] [TC:3.A.1.5], synonyms: peptide/nickel transport system permease protein, ABC.PE.P1
YP_003729284.1	[KO:K02033] [TC:3.A.1.5], synonyms: ABC.PE.P, peptide/nickel transport system permease protein
YP_003729285.1	[KO:K02035] [TC:3.A.1.5.2], synonyms: peptide/nickel transport system substrate-binding protein, ABC.PE.S
YP_003729286.1	[KO:K02899], synonyms: RP-L27, 50S ribosomal protein L27, rpl27
YP_003729287.1	[KO:K02888], synonyms: RP-L21, 50S ribosomal protein L21, rpl21
YP_003729288.1	[KO:K02397], synonyms: fla, flagellin B homolog
YP_003729289.1	[KO:K01426], synonyms: acylamide amidohydrolase, acetamidase, acylamidase, N-acetylaminohydrolase, aliphatic amidase
YP_003729290.1	4.1.3.38] [KO:K01665 K02619], contains: 4-amino-4-deoxychorismate lyase,, para-aminobenzoate synthetase component I, synonyms: ADC synthase, chorismate:L-glutamine amido-ligase
YP_003729291.1	[KO:K01163]
YP_003729293.1	[KO:K01586], synonyms: DAP decarboxylase
YP_003729294.1	annotated as putative vacuolating cytotoxin paralog in H. pylori 26695 and J99
YP_003729297.1	[KO:K01417], annotated as ATP-dependent zinc metallopeptidase in H. pylori J99, as cell division protein in 26695
YP_003729298.1	[KO:K03423], synonyms: UPF0004
YP_003729300.1	[KO:K01735], synonyms: aro1, 3-deoxy-arabino-heptulonate-7-phosphate phosphate-lyase (cyclizing), 5-dehydroquinate synthase, 5-dehydroquinic acid synthetase
YP_003729301.1	[KO:K09944], trkA domain protein
YP_003729302.1	[KO:K00773], synonyms: tRNA-guanine transglycosylase, guanine insertion enzyme
YP_003729303.1	[KO:K02517], synonyms: ibpB, heat shock protein B
YP_003729304.1	[KO:K02841], synonyms: lipopolysaccharide heptosyltransferase-1, waaC
YP_003729305.1	3.6.1.40] [KO:K01514 K01524], synonyms: guanosine pentaphosphate phosphohydrolase, exopolyphosphatase, ppx
YP_003729306.1	[KO:K05337]
YP_003729308.1	annotated as ATP-dependent nuclease in H. pylori 26695
YP_003729309.1	[KO:K06940], synonyms: ykgJ
YP_003729313.1	[KO:K09778]
YP_003729314.1	[KO:K06168], synonyms: UPF0004
YP_003729316.1	[KO:K01564], annotated as chlorohydrolase in H. pylori 26695
YP_003729317.1	[KO:K01465], synonyms: aspartate carbamoyltransferase 42 kDa non-catalytic chain
YP_003729318.1	[KO:K06196] [TC:5.A.1.2]
YP_003729319.1	[KO:K03695], synonyms: chaperone protein clpB, ATP-dependent protease binding subunit
YP_003729320.1	[KO:K07319], annotated as type II DNA modification (methyltransferase in H. pylori J99, adenine specific DNA methyltransferase (hpaim) in H. pylori 26695, synonyms: yhdJ
YP_003729324.1	[KO:K00571], synonyms: adenine specific DNA methyltransferase
YP_003729325.1	[KO:K03601], synonyms: exodeoxyribonuclease 7 large subunit, exonuclease VII large subunit
YP_003729326.1	[KO:K01417,K11749], annotated as putative zinc metalloprotease HP_0258 in H. pylori 26695
YP_003729329.1	[KO:K01939], synonyms: IMP-aspartate ligase, AdSS, AMPSase, IMP:L-aspartate ligase (GDP-forming), succino-AMP synthetase, succinoadenylic kinosynthetase, adenylosuccinate synthetase
YP_003729330.1	annotated as outer membrane protein (omp8) in H. pylori 26695
YP_003729331.1	annotated as outer membrane protein (omp7) in H. pylori 26695
YP_003729333.1	[KO:K02034] [TC:3.A.1.5], synonyms: oligopeptide ABC transporter, permease protein, ABC.PE.P1
YP_003729334.1	[KO:K02031 K02032] [TC:3.A.1.5], synonyms: oligopeptide ABC transporter, ATP-binding protein, ABC.PE.A, dppD, dppF
YP_003729337.1	[KO:K00992], annotated as DEAD-box ATP dependent DNA helicase in H. pylori 26695, KEGG orthology annotated as unclassified
YP_003729338.1	[KO:K02394], synonyms: flagellar basal body P-ring protein
YP_003729340.1	[KO:K07710], synonyms: signal-transducing protein, histidine kinase, HD.NTRC.S.ATOS, ATP:protein-L-histidine N-phosphotransferase, note: two-component system sensor activity
YP_003729341.1	[KO:K04047], annotated as neutrophil activating protein (NapA) (bacterioferritin) in H. pylori 26695, synonyms: DNA protection during starvation protein, napA
YP_003729344.1	[KO:K02523]
YP_003729345.1	[KO:K02492], synonyms: GluTR
YP_003729346.1	[KO:K01881], synonyms: proline-tRNA ligase, ProRS, prolyl-s-RNA synthetase, prolyl-transfer ribonucleic acid synthetase, prolyl-transferRNA synthetase, L-proline:tRNAPro ligase (AMP-forming)
YP_003729347.1	[KO:K01749], synonyms: porphobilinogen deaminase, PBG, hydroxymethylbilane synthase, HMBS, pre-uroporphyrinogen synthase, (4-(2-carboxyethyl)-3-(carboxymethyl)pyrrol-2- yl)methyltransferase (hydrolyzing), HMB-synthase, porphobilinogen ammonia-lyase (polymerizing), porphobilinogen:(4-[2-carboxyethyl]-3- [carboxymethyl]pyrrol-2-yl)methyltransferase (hydrolysing)
YP_003729349.1	[KO:K07126], synonyms: cysteine-rich protein E, beta-lactamase hcpE [Precursor]
YP_003729353.1	[KO:K01917]
YP_003729354.1	synonyms: UPF0323
YP_003729355.1	[KO:K03981]
YP_003729356.1	[KO:K00979], synonyms; 3-deoxy-manno-octulosonate cytidylyltransferase, CMP-KDO synthetase, CMP-2-keto-3-deoxyoctulosonic acid synthetase, CKS
YP_003729357.1	annotated as outer membrane protein (Omp6) in H. pylori 26695
YP_003729359.1	annotated as outer membrane protein (omp5) in H. pylori 26695
YP_003729360.1	Outer membrane protein, Helicobacter
YP_003729362.1	[KO:K07090]
YP_003729363.1	1.8.4.11] [KO:K07304 K07305], includes: peptide-methionine (S)-S-oxide reductase, peptide-methionine (R)-S-oxide reductase, synonyms: msrB, msrA, peptide methionine sulfoxide reductase
YP_003729364.1	[KO:K04485]
YP_003729366.1	[KO:K04488 K07400], annotated as NifU-like protein in H. pylori 26695, synonyms: nitrogen fixation protein NifU and related proteins, thioredoxin-like protein, iscU
YP_003729367.1	[KO:K04487], synonyms: iscS, L-cysteine:enzyme cysteine sulfurtransferase
YP_003729369.1	[KO:K06910]
YP_003729370.1	[KO:K00099], synonyms: DXP reductoisomerase, 1-deoxyxylulose-5-phosphate reductoisomerase, 2-C-methyl-D-erythritol 4-phosphate synthase, DOXP reductoisomerase, 1-deoxy-D-xylulose-5-phosphate isomeroreductase, 2-C-methyl-D-erythritol-4-phosphate:NADP+ oxidoreductase (isomerizing)
YP_003729371.1	[KO:K00981], synonyms: CDP-diglyceride synthetase, CDS1, CDP-diglyceride pyrophosphorylase, CDP-diglyceride synthetase, CDP-diacylglycerol synthase, CDS, CTP:phosphatidate cytidylyltransferase, CDP-DG synthetase, CDP-DAG synthase
YP_003729372.1	annotated as sodium-dependent transporter (HuNaDC-1) in H. pylori 26695
YP_003729373.1	[KO:K03495], annotated as tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG in H. pylori 26695, synonyms: mnmG
YP_003729374.1	[KO:K01439], synonyms: N-succinyl-L-alpha,epsilon-diaminopimelic acid deacylase, N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase
YP_003729375.1	[KO:K07126], synonyms: cysteine-rich 28 kDa protein
YP_003729377.1	[KO:K04079], synonyms: heat shock protein 90, HSP90A, high temperature protein G
YP_003729379.1	Glycosyl transferase, family 8
YP_003729380.1	annotated as putative lipopolysaccharide biosynthesis protein in H. pylori J99
YP_003729381.1	[KO:K03593], synonyms: mpr
YP_003729386.1	[KO:K00648], synonyms: 3-oxoacyl-[acyl-carrier-protein] synthase 3, Beta-ketoacyl-ACP synthase III, KAS III
YP_003729387.1	[KO:K03621], synonyms: glycerol-3-phosphate acyltransferase PlsX
YP_003729388.1	Ribosomal protein L32p
YP_003729390.1	[KO:K00940], synonyms: ATP:nucleoside-diphosphate phosphotransferase, nucleoside diphosphate (UDP) kinase, NDP kinase, nucleoside-2-P kinase
YP_003729391.1	[KO:K00789], synonyms: metX, methionine adenosyltransferase, AdoMet synthetase, MAT, S-adenosyl-L-methionine synthetase
YP_003729392.1	[KO:K02536]
YP_003729393.1	[KO:K00208], synonyms: NADH-dependent enoyl-ACP reductase
YP_003729394.1	[KO:K01803], synonyms: D-glyceraldehyde-3-phosphate aldose-ketose-isomerase, phosphotriose isomerase, triose phosphate mutase
YP_003729395.1	[KO:K00246], synonyms: fumarate reductase cytochrome b-556 subunit
YP_003729396.1	Fumarate reductase flavoprotein subunit, Succinate dehydrogenase or fumarate reductase, flavoprotein subunit, FAD binding domain, sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit
YP_003729397.1	[KO:K00245], synonyms: sdhB, succinate:acceptor oxidoreductase, succinodehydrogenase
YP_003729399.1	synonyms: UPF0114
YP_003729404.1	[KO:K00600], synonyms: serine hydroxymethyltransferase, Serine methylase, SHMT, allothreonine aldolase, 5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase, L-serine hydroxymethyltransferase, serine hydroxymethylase, serine hydroxymethyltransferase
YP_003729405.1	[KO:K04567], synonyms: lysU, karS, L-lysine-transfer RNA ligase, L-lysine:tRNALys ligase (AMP-forming), lysyl-transfer ribonucleate synthetase
YP_003729406.1	[KO:K03558]
YP_003729407.1	[KO:K03820], synonyms: ALP N-acyltransferase
YP_003729408.1	[KO:K09810] [TC:3.A.1.125], synonyms: ABC.LPT.A, annotated as ABC transporter, ATP-binding protein in H. pylori 26695
YP_003729409.1	[KO:K01654], synonyms: sialic acid synthase, spore coat polysaccharide biosynthesis protein E, (NANA)condensing enzyme, N-acetylneuraminate pyruvate-lyase (pyruvate-phosphorylating), N-acetylneuraminic acid synthase, NeuAc synthase, phosphoenolpyruvate:N-acetyl-D-mannosamine C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)
YP_003729410.1	[KO:K02356]
YP_003729411.1	[KO:K01624], synonyms: D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming), diphosphofructose aldolase, fructose-1,6-bisphosphate triosephosphate-lyase, ketose 1-phosphate aldolase, fructoaldolase
YP_003729412.1	annotated as cell binding factor 2 in H. pylori 26695
YP_003729414.1	[KO:K02421]
YP_003729415.1	[KO:K03750]
YP_003729416.1	[KO:K02836], synonyms: RF-2, peptide chain release factor 2
YP_003729418.1	[KO:K08303], annotated as collagenase in H. pylori 26695
YP_003729421.1	[KO:K02483], synonyms: HD.OMPR.R
YP_003729422.1	[KO:K02484], annotated as putative histidine kinase sensor protein in H. pylori J99, synonyms: HD.OMPR.S
YP_003729423.1	[KO:K01698], synonyms: delta-aminolevulinic acid dehydratase, ALADH, ALAD
YP_003729424.1	UPF0082 family
YP_003729426.1	[KO:K07126], annotated as putative beta-lactamase hcpD [Precursor] or Penicillin-binding protein 4 or PBP 4 or Cysteine-rich protein D in H. pylori 26695
YP_003729427.1	annotated as lipopolysaccharide 1,2-glucosyltransferase RfaJ in H. pylori 26695
YP_003729429.1	[KO:K00891], synonyms: ATP:shikimate 3-phosphotransferase
YP_003729432.1	[KO:K01689], synonyms: phosphopyruvate hydratase, 2-phosphoglycerate dehydratase, 2-phospho-D-glycerate hydro-lyase
YP_003729433.1	[KO:K03553], synonyms: recombinase A
YP_003729434.1	[KO:K07083]
YP_003729439.1	[KO:K00406], synonyms: cytochrome c oxidase, diheme subunit, membrane-bound (FixP)
YP_003729440.1	[KO:K00407], synonyms: cbb3-type cytochrome c oxidase subunit Q
YP_003729441.1	[KO:K00405], synonyms: cytochrome c oxidase, monoheme subunit, membrane-bound (FixO)
YP_003729442.1	[KO:K00404], synonyms: cytochrome c oxidase, heme b and copper-binding subunit, membrane-bound, fixN
YP_003729444.1	[KO:K03575]
YP_003729445.1	[KO:K03303] [TC:2.A.14], synonyms: L-lactate permease, TC.LCTP
YP_003729446.1	[KO:K03303] [TC:2.A.14], synonyms: L-lactate permease
YP_003729447.1	[KO:K00104], synonyms: (S)-2-hydroxy-acid:oxygen 2-oxidoreductase, L-2-hydroxy acid oxidase, L-alpha-hydroxy acid oxidase, oxidase, L-2-hydroxy acid
YP_003729448.1	annotated as putative iron sulfur protein in H. pylori 26695
YP_003729449.1	[KO:K00782]
YP_003729450.1	[KO:K03386], synonyms: bacterioferritin comigratory protein, PRXQ, DOT5, thioredoxin reductase
YP_003729452.1	[KO:K01626], synonyms: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, dhs1, aroG, aroH
YP_003729454.1	[KO:K03837] [TC:2.A.42]
YP_003729455.1	[KO:K01752], synonyms: SDH, L-serine deaminase, L-SD, L-serine ammonia-lyase (pyruvate-forming), L-serine hydro-lyase (deaminating)
YP_003729461.1	annotated as outer membrane protein (omp4) in H. pylori 26695
YP_003729462.1	[KO:K02887], synonyms: rpl20, RP-L20, 50S ribosomal protein L20
YP_003729463.1	[KO:K02916], synonyms: RP-L35, 50S ribosomal protein L35, rpl35
YP_003729464.1	[KO:K02520], synonyms: IF-3
YP_003729465.1	[KO:K01868], synonyms: threonine-tRNA ligase, ThrRS, L-threonine:tRNAThr ligase (AMP-forming), threonyl ribonucleic synthetase, threonyl-transfer RNA synthetase
YP_003729467.1	[KO:K01007], synonyms: phosphoenolpyruvate synthase, ATP:pyruvate, water phosphotransferase, PEP synthase, phoephoenolpyruvate synthetase, pyruvate-water dikinase (phosphorylating)
YP_003729470.1	[KO:K03168], synonyms: omega-protein, relaxing enzyme, untwisting enzyme, swivelase, type I DNA topoisomerase
YP_003729471.1	[KO:K02406], synonyms: flagellin B, flagellin N, flaB
YP_003729474.1	[KO:K01628], synonyms: L-fuculose-1-phosphate lactaldehyde-lyase, L-fuculose-1-phosphate S-lactaldehyde-lyase (glycerone-phosphate-forming), fuculose aldolase
YP_003729475.1	[KO:K03705]
YP_003729476.1	[KO:K03687], synonyms: co-chaperone and heat shock protein, HSP-70 cofactor
YP_003729477.1	[KO:K04043] [TC:1.A.33], synonyms: heat shock protein 70, heat shock 70 kDa protein, HSP70
YP_003729479.1	[KO:K01738], synonyms: cysK, 3-O-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase, acetylserine sulfhydrylase, O(3)-acetyl-L-serine acetate-lyase (adding hydrogen-sulfide), O-acetylserine (thiol)-lyase, O-acetyl-L-serine sulfohydrolase, O3-acetyl-L-serine:hydrogen-sulfide 2-amino-2-carboxyethyltransferase, OAS sulfhydrylase, CSase
YP_003729480.1	4.4.1.8] [KO:K01739 K01760], synonyms: O-succinylhomoserine (thiol)-lyase, CGS, metC
YP_003729481.1	[KO:K07173], synonyms: S-ribosylhomocysteinase, autoinducer-2 production protein luxS, AI-2 synthesis protein
YP_003729482.1	[KO:K01119]
YP_003729483.1	[KO:K03406], synonyms: mcp
YP_003729487.1	[KO:K09765]
YP_003729488.1	[KO:K03406]
YP_003729489.1	[KO:K01733], synonyms: O-phospho-L-homoserine phospho-lyase (adding water), O-phospho-L-homoserine phospho-lyase (adding water; L-threonine-forming), threonine synthetase
YP_003729491.1	[KO:K00058], annotated as, phosphoglycerate dehydrogenase in H. pylori 26695, synonyms: (R)-2-hydroxyacid:NAD(P)+ oxidoreductase, (R)-sulfolactate:NAD(P)(+) oxidoreductase, L-sulfolactate dehydrogenase
YP_003729494.1	[KO:K07319], synonyms: type II restriction enzyme M protein, YHDJ
YP_003729496.1	[KO:K00645], synonyms: malonyl coenzyme A-acyl carrier protein transacylase
YP_003729497.1	3.2.2.9] [KO:K01244 K01243], synonyms: mtnN, MeSAdo nucleosidase, methylthioadenosine methylthioribohydrolase, MTA nucleosidase, S-methyl-5'-thioadenosine adeninehyrolase, AdoHcy/MTA nucleosidase, S-adenosyl-L-homocysteine homocysteinylribohydrolase, S-adenosylhomocysteine/5'-methylthioadenosine nucleosidase
YP_003729498.1	[KO:K03086], synonyms: sig1, sigma-70
YP_003729500.1	[KO:K00116], synonyms: malate:quinone oxidoreductase, (S)-malate:(acceptor) oxidoreductase, FAD-dependent malate-vitamin K reductase, malate-vitamin K reductase
YP_003729502.1	[KO:K02871], synonyms: rpl13, RP-L13, 50S ribosomal protein L13
YP_003729503.1	[KO:K02996], synonyms: 30S ribosomal protein S9, RP-S9, rps9
YP_003729504.1	[KO:K03406], synonyms: methyl-accepting chemotaxis transducer (TlpC)
YP_003729508.1	[KO:K02835]
YP_003729509.1	[KO:K02968], synonyms: 30S ribosomal protein S20, RP-S20, rps20
YP_003729510.1	[KO:K03431]
YP_003729511.1	[KO:K03101], synonyms: lipoprotein signal peptidase, SPASEII, prolipoprotein signal peptidase, SPase II
YP_003729513.1	[KO:K01429 K01430], synonyms: hpuA, urea amidohydrolase subunit alpha
YP_003729514.1	[KO:K01428], annotated as urea amidohydrolase subunit beta (ureB) in H. pylori 26695
YP_003729516.1	[KO:K03191], synonyms: Urease accessory protein UreI
YP_003729517.1	[KO:K03187]
YP_003729518.1	[KO:K03188]
YP_003729519.1	[KO:K03189]
YP_003729520.1	[KO:K03190], synonyms: ureD
YP_003729522.1	annotated as DNA segregation ATPase FtsK/SpoIIIE and related proteins in COG
YP_003729529.1	Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
YP_003729533.1	1.5.99.8] [KO:K00294 K00318], synonyms: 1-pyrroline-5-carboxylate dehydrogenase, proline dehydrogenase, 1-pyrroline-5-carboxylate:NAD+ oxidoreductase, delta1-pyrroline-5-carboxylate dehydrogenase, L-pyrroline-5-carboxylate-NAD+ oxidoreductase, pyrroline-5-carboxylic acid dehydrogenase
YP_003729534.1	[KO:K03307] [TC:2.A.21], synonyms: proline permease, TC.SSS, solute:Na+ symporter, SSS family
YP_003729535.1	C-5 cytosine-specific DNA methylase
YP_003729537.1	annotated as putative type II restriction enzyme in H. pylori J99 and C.chlorochromatii
YP_003729538.1	Type III restriction-modification system EcoP15I enzyme mod (EcoP15I methyltransferase) (M.EcoP15I), DNA methylase N-4/N-6
YP_003729539.1	Modification methylase DpnIIB (Adenine-specific methyltransferase DpnIIB) (M.DpnIIB) (M.DpnII 2), DNA methylase N-4/N-6
YP_003729541.1	[KO:K00558], synonyms: DNMT, ddeM, deoxyribonucleic (cytosine-5-)-methyltransferase, deoxyribonucleic acid (cytosine-5-)-methyltransferase, DNA 5-cytosine methylase, S-adenosyl-L-methionine:DNA (cytosine-5-)-methyltransferase, DNA cytosine c5 methylase
YP_003729542.1	[KO:K07319], synonyms: yhdJ, N-6 adenine-specific DNA methylase
YP_003729543.1	putative agmatine deiminase (Agmatine iminohydrolase), Porphyromonas-type peptidyl-arginine deiminase, Porphyromonas-type peptidyl-arginine deiminase, aguA-like
YP_003729546.1	annotated as putative adenine specific DNA methyltransferase in H. pylori 26695
YP_003729547.1	[KO:K00767], synonyms: quinolinate phosphoribosyltransferase [decarboxylating], QAPRTase, NAD pyrophosphorylase, nicotinate mononucleotide pyrophosphorylase (carboxylating), nicotinate-nucleotide pyrophosphorylase (carboxylating), quinolinate phosphoribosyltransferase (decarboxylating), quinolinic acid phosphoribosyltransferase
YP_003729548.1	[KO:K03517]
YP_003729549.1	[KO:K01613], contains: phosphatidylserine decarboxylase alpha chain, phosphatidylserine decarboxylase beta chain, synonyms: phosphatidyl-L-serine carboxy-lyase (phosphatidylethanolamine-forming), phosphatidyl-L-serine carboxy-lyase, PS decarboxylase
YP_003729552.1	[KO:K03179], synonyms: 4-HB polyprenyltransferase, para-hydroxybenzoate transferase, para-hydroxybenzoate-polyprenyl diphosphate transferase, para-hydroxybenzoate:polyprenyltransferase, PHB polyprenyl diphosphate transferase
YP_003729553.1	[KO:K02238], synonyms: comE3, ycaI, competence locus E
YP_003729554.1	[KO:K02314]
YP_003729556.1	[KO:K02484], annotated as putative histidine kinase sensor protein in H. pylori 26695, synonyms: HD.OMPR.S
YP_003729557.1	[KO:K02483], synonyms: HD.OMPR.R
YP_003729558.1	putative type III restriction-modification system HindVIP enzyme mod (HindVIP methyltransferase) (M.HindVIP), DNA methylase N-4/N-6
YP_003729559.1	Modification methylase KpnI (Adenine-specific methyltransferase KpnI) (M.KpnI), DNA methylase N-4/N-6
YP_003729560.1	annotated as type III restriction enzyme R protein in H. pylori strains 26695 and J99
YP_003729561.1	[KO:K03570]
YP_003729562.1	[KO:K03569]
YP_003729563.1	[KO:K03544]
YP_003729564.1	[KO:K00677], synonyms: uridine diphosphoacetylglucosamine acyltransferase, UDP-N-acetylglucosamine acyltransferase, acyl-[acyl-carrier protein]-UDP-N-acetylglucosamine O-acyltransferase, acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase, (R)-3-hydroxytetradecanoyl-acyl-carrier-protein:UDP-N- acetylglucosamine 3-O-(3-hydroxytetradecanoyl)transferase
YP_003729565.1	[KO:K02372], synonyms: [acyl carrier protein] dehydratase
YP_003729566.1	annotated as flagellar assembly factor fliW 2 in H. pylori 26695
YP_003729568.1	[KO:K05807], annotated as competence lipoprotein in H. pylori 26695
YP_003729569.1	[KO:K01338], synonyms: ATP-dependent protease La, endopeptidase La
YP_003729570.1	[KO:K00210], synonyms: chorismate mutase-prephenate dehydrogenase, prephenate:NAD+ oxidoreductase (decarboxylating)
YP_003729572.1	annotated as putative endonuclease in H. pylori J99
YP_003729573.1	[KO:K07316], annotated as putative type III DNA modification enzyme (methyltransferase) in H. pylori J99
YP_003729574.1	annotated as putative type III restriction enzyme in H. pylori J99
YP_003729576.1	[KO:K01012], synonyms: biotin synthetase, dethiobiotin:sulfur sulfurtransferase
YP_003729577.1	[KO:K07058], annotated as putative ribonuclease N in H. pylori 26695
YP_003729583.1	Protein of unknown function DUF262
YP_003729584.1	Protein of unknown function DUF262, Protein of unknown function (DUF1524)
YP_003729585.1	Phosphoesterase, RecJ-like, DHH family
YP_003729591.1	[KO:K06879], synonyms: NADPH-dependent 7-cyano-7-deazaguanine reductase, 7-cyano-7-carbaguanine reductase, preQ(0) reductase, NADPH-dependent nitrile oxidoreductase
YP_003729592.1	[KO:K09710]
YP_003729593.1	[KO:K00791], synonyms: IPP transferase, isopentenyl-diphosphate:tRNA isopentenyltransferase, IPTase, IPPT, delta2-isopentenyl pyrophosphate:transfer ribonucleic acid delta2-isopentenyltransferase, isopentenyl-diphosphate:tRNA isopentenyltransferase, transfer ribonucleate isopentenyltransferase
YP_003729594.1	annotated as lipopolysaccharide 1,2-glucosyltransferase in H. pylori 26695
YP_003729595.1	Modification methylase EcoRI (M.EcoRI)
YP_003729596.1	DNA methylase N-4/N-6
YP_003729597.1	[KO:K10536]
YP_003729598.1	[KO:K04656], annotated as Transcriptional regulator in H. pylori 26695
YP_003729599.1	[KO:K04655]
YP_003729601.1	[KO:K02377], annotated as nodulation protein (NolK) in H. pylori 26695, synonyms: GDP-4-keto-6-deoxy-alpha-D-mannose 3,5-epimerase-4-reductase
YP_003729602.1	[KO:K01711], synonyms: GDP-D-mannose dehydratase, rfbD, GDP-mannose 4,6-hydro-lyase (GDP-4-dehydro-6-deoxy-D-mannose-forming), guanosine 5'-diphosphate-D-mannose oxidoreductase, guanosine diphosphomannose oxidoreductase
YP_003729603.1	[KO:K00971], annotated as mannose-6-phosphate isomerase (pmi) or (AlgA) in H. pylori 26695, synonyms: GDP:alpha-D-mannose-1-phosphate guanylyltransferase, guanosine diphosphate-mannose 1-phosphate guanylyltransferase, mannose 1-phosphate (guanosine diphosphate) guanylyltransferase
YP_003729604.1	[KO:K03195]
YP_003729605.1	[KO:K03204], annotated as component of conjugal plasmid transfer system in H. pylori 26695
YP_003729606.1	[KO:K03203]
YP_003729608.1	[KO:K07344], annotated as NADH-ubiquinone oxidoreductase subunit in H. pylori 26695
YP_003729610.1	[KO:K09747]
YP_003729611.1	[KO:K01579], synonyms: aspartate alpha-decarboxylase, Aspartate 1-decarboxylase [Precursor], contains: aspartate 1-decarboxylase beta chain, aspartate 1-decarboxylase alpha chain
YP_003729612.1	[KO:K03694], synonyms: ATP-dependent C1p protease
YP_003729616.1	[KO:K01935], synonyms: dethiobiotin synthase, DTB synthetase, DTBS, 7,8-diaminononanoate:carbon-dioxide cyclo-ligase (ADP-forming), desthiobiotin synthase, DTB synthetase
YP_003729618.1	[KO:K00031], synonyms: Isocitrate dehydrogenase [NADP], IDH, Oxalosuccinate decarboxylase, NADP(+)-specific ICDH, IDP
YP_003729619.1	[KO:K01647], synonyms: type II citrate synthase
YP_003729624.1	[KO:K03760]
YP_003729626.1	[KO:K01618]
YP_003729627.1	[KO:K03415], synonyms: chemotaxis protein
YP_003729628.1	[KO:K09859]
YP_003729629.1	[KO:K03199]
YP_003729633.1	[KO:K00566], synonyms: S-adenosyl-L-methionine:tRNA (5-methylaminomethyl-2-thio-uridylate)-methyltransferase, transfer ribonucleate 5-methylaminomethyl-2-thiouridylate 5-methyltransferase, tRNA 5-methylaminomethyl-2-thiouridylate 5'-methyltransferase
YP_003729634.1	[KO:K02316]
YP_003729635.1	[KO:K04078], synonyms: co-chaperonin GroES, 10 kDa chaperonin, protein Cpn10, groES protein, heat shock protein 10, groES, hsp10, hspA, mopB, HSPE1
YP_003729636.1	[KO:K04077], synonyms: HSPD1, protein Cpn60, 60 kDa chaperonin, heat shock protein 60, groEL, hsp60, hspB, mopA
YP_003729637.1	involved in adhesion, annotated as outer membrane protein omp1 in H. pylori 26695
YP_003729640.1	[KO:K01918], synonyms: (R)-pantoate:beta-alanine ligase (AMP-forming), D-pantoate:beta-alanine ligase (AMP-forming), pantothenate synthetase, pantoate-beta-alanine ligase, pantoate-activating enzyme, PS
YP_003729641.1	[KO:K01591], synonyms: orotidine monophosphate decarboxylase, orotidine-5'-phosphate carboxy-lyase (UMP-forming), UMP synthase, orotate monophosphate decarboxylas, ODCase, OMP decarboxylase, OMPDCase, OMPdecase
YP_003729642.1	[KO:K01673], synonyms: carbonate dehydratase, icfA
YP_003729643.1	[KO:K01627], synonyms: Phospho-2-dehydro-3-deoxyoctonate aldolase, 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase, KDO-8-phosphate synthetase, KDO 8-P synthase, KDOPS, 3-deoxy-D-manno-octulosonate-8-phosphate synthase, phosphoenolpyruvate:D-arabinose-5-phosphate C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)
YP_003729644.1	[KO:K00794], synonyms: 6,7-dimethyl-8-ribityllumazine synthase, DMRL synthase, Lumazine synthase, ribE
YP_003729645.1	[KO:K03625], synonyms: transcription antitermination protein NusB
YP_003729649.1	Protein of unknown function UPF0174
YP_003729650.1	Protein of unknown function UPF0174, Uncharacterised protein family (UPF0174)
YP_003729651.1	Protein of unknown function UPF0174
YP_003729652.1	[KO:K02392]
YP_003729654.1	[KO:K01409], synonyms: glycoprotease
YP_003729655.1	[KO:K00097], synonyms: 4-(phosphohydroxy)-L-threonine dehydrogenase
YP_003729656.1	[KO:K03474], synonyms: pyridoxal phosphate biosynthetic protein PdxJ, pyridoxine 5'-phosphate synthase, PNP synthase
YP_003729659.1	[KO:K02851], annotated as methicillin resistance protein (llm) in H. pylori 26695
YP_003729661.1	[KO:K02072], annotated as ABC transporter, permease protein (YaeE) in H. pylori 26695, synonyms: ABC.MET.P
YP_003729662.1	[KO:K02071], synonyms: abc, ABC.MET.A
YP_003729663.1	[KO:K04061], annotated as ABC transporter, putative in H. pylori 26695, synonyms: FLHB2
YP_003729664.1	[KO:K00793], synonyms: riboflavin synthase subunit alpha, ribC
YP_003729665.1	[KO:K03424]
YP_003729666.1	[KO:K08307,K01238], annotated as regulatory protein DniR in H. pylori 26695
YP_003729667.1	[KO:K03642]
YP_003729668.1	[KO:K03270], synonyms: 3-deoxy-D-manno-octulosonate-8-phosphate 8-phosphohydrolase
YP_003729670.1	[KO:K09774]
YP_003729671.1	[KO:K03978], synonyms: engB
YP_003729673.1	[KO:K05515], synonyms: mrdA
YP_003729676.1	[KO:K02073], synonyms: ABC.MET.S
YP_003729677.1	[KO:K03386], synonyms: Thioredoxin reductase, 26 kDa antigen
YP_003729678.1	[KO:K02016] [TC:3.A.1.14], synonyms: iron(III) ABC transporter, periplasmic iron-binding protein, ABC.FEV.S
YP_003729679.1	[KO:K02016] [TC:3.A.1.14], annotated as iron(III) ABC transporter, periplasmic iron-binding protein in H. pylori 26695, synonyms: ABC.FEV.S
YP_003729680.1	[KO:K03588]
YP_003729682.1	[KO:K02387]
YP_003729683.1	[KO:K02388]
YP_003729684.1	[KO:K02408]
YP_003729685.1	annotated as cell division protein in H. pylori 26695 and as penicillin-binding protein in J99
YP_003729687.1	[KO:K00413], synonyms: ubiquinol cytochrome c oxidoreductase, cytochrome c1, fbcH
YP_003729688.1	[KO:K00412], synonyms: ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (FbcH), CYTB
YP_003729689.1	[KO:K00411], synonyms: ubiquinol cytochrome c oxidoreductase, Rieske 2Fe-2S subunit (FbcF), RIP1
YP_003729690.1	[KO:K03723], synonyms: trcF, ATP-dependent helicase mfd, TRCF
YP_003729692.1	annotated as ToxR-activated gene in H. pylori 26695
YP_003729693.1	annotated as ToxR-activated gene in H. pylori 26695
YP_003729694.1	6.3.2.12] [KO:K01927 K01930], synonyms: dihydrofolate synthase, folate polyglutamate synthetase, N(10)-formyltetrahydropteroyldiglutamate synthetase, tetrahydrofolate:L-glutamate gamma-ligase (ADP-forming), 7,8-dihydrofolate synthetase, dihydrofolate synthetase-folylpolyglutamate synthetase, FHFS/FPGS
YP_003729696.1	[KO:K01869], synonyms: L-leucine:tRNALeu ligase (AMP-forming), leucine translase, leucine-tRNA synthetase, leucyl-transfer ribonucleate synthetas, leucyl-transfer ribonucleic acid synthetase, leucyl-transfer RNA synthetase, leucyl-tRNA synthetase, leucine-tRNA ligase, LeuRS
YP_003729698.1	[KO:K03074] [TC:3.A.5]
YP_003729699.1	[KO:K03072] [TC:3.A.5]
YP_003729700.1	[KO:K03210] [TC:3.A.5], synonyms: UPF0092
YP_003729701.1	[KO:K03313] [TC:2.A.33], synonyms: TC.NHA, sodium/proton antiporter nhaA
YP_003729703.1	[KO:K02967], synonyms: RP-S2, rps2, 30S ribosomal protein S2
YP_003729704.1	[KO:K02357], synonyms: EF-TS
YP_003729709.1	[KO:K03841], synonyms: FBP1, FBP2, FBPase, D-fructose-1,6-bisphosphate 1-phosphohydrolase, fructose diphosphatase, fructose 1,6-bisphosphate phosphatase
YP_003729710.1	[KO:K02342], synonyms: DPO3E
YP_003729713.1	annotated as fibronectin/fibrinogen-binding protein in H. pylori 26695
YP_003729714.1	[KO:K03631]
YP_003729715.1	[KO:K00858], synonyms: ATP:NAD+ 2'-phosphotransferase, NAD kinase, nicotinamide adenine dinucleotide kinase (phosphorylating)
YP_003729717.1	annotated as outer membrane protein (omp30) in H. pylori 26695
YP_003729718.1	Protein of unknown function DUF1524 RloF
YP_003729720.1	Protein of unknown function DUF262, Protein of unknown function DUF262
YP_003729721.1	[KO:K00259], synonyms: alanine oxidoreductase, alpha-alanine dehydrogenase, L-alanine dehydrogenase, L-alanine:NAD+ oxidoreductase (deaminating), NAD-dependent alanine dehydrogenase, NAD-linked alanine dehydrogenase, NADH-dependent alanine dehydrogenase
YP_003729722.1	[KO:K01476], synonyms: arginine amidinase, arginine transamidinase, canavanase, L-arginase, L-arginine amidinohydrolase
YP_003729724.1	[KO:K07043]
YP_003729725.1	[KO:K01153], synonyms: adenosine triphosphate-dependent deoxyribonuclease, ATP-dependent DNase, deoxyribonuclease (adenosine triphosphate-hydrolyzing), deoxyribonuclease (ATP-and S-adenosyl-L-methionine-dependent), type I restriction enzyme, type I site-specific deoxyribonuclease
YP_003729726.1	[KO:K03427], synonyms: N-6 adenine-specific DNA methylase
YP_003729727.1	Restriction endonuclease, type I, S subunit, EcoBI, Type I restriction modification DNA specificity domain
YP_003729730.1	[KO:K03465], synonyms: FAD-dependent thymidylate synthase, 5,10-methylenetetrahydrofolate,FADH2:dUMP C-methyltransferase, FDTS, flavin dependent thymidylate synthase, Thy1, TS, TSase
YP_003729731.1	[KO:K00820], synonyms: hexosephosphate aminotransferase, D-fructose-6-phosphate amidotransferase, GFAT, L-glutamine-D-fructose-6-phosphate amidotransferase,, glucosamine-6-phosphate synthase, GlcN6P synthase, hexosephosphate aminotransferase, L-glutamine-D-fructose-6-phosphate amidotransferase, L-glutamine:D-fructose-6-phosphate isomerase, glucosamine-6-phosphate isomerase (glutamine-forming)