-- dump date 20140619_112641 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 585535000001 SEQ_END SEQ_END NC_017360.1 1566655 1566655 DR NC_017360.1; contig end 1566655..1566655 Helicobacter pylori 35A YP_005769168.1 CDS HMPREF4655_20002 NC_017360.1 183 302 D hypothetical protein 183..302 Helicobacter pylori 35A 12348457 YP_005769169.1 CDS HMPREF4655_20003 NC_017360.1 326 1225 D hypothetical protein 326..1225 Helicobacter pylori 35A 12348459 YP_005769170.1 CDS HMPREF4655_20004 NC_017360.1 1233 1367 D hypothetical protein 1233..1367 Helicobacter pylori 35A 12348461 YP_005769171.1 CDS queF NC_017360.1 1336 1776 R COG: COG0780; Pfam: PF01227; InterPro: IPR001474; PreQ(1) synthase complement(1336..1776) Helicobacter pylori 35A 12348463 YP_005769172.1 CDS HMPREF4655_20006 NC_017360.1 1835 2176 D COG: COG0799; Pfam: PF02410; InterPro: IPR004394; iojap family protein 1835..2176 Helicobacter pylori 35A 12348471 YP_005769173.1 CDS miaA NC_017360.1 2139 3077 D COG: COG0324; Pfam: PF01715; InterPro: IPR002627; tRNA isopentenyltransferase 2139..3077 Helicobacter pylori 35A 12348473 YP_005769174.1 CDS rfaJ NC_017360.1 3082 4191 D COG: COG1442; Pfam: PF01501; InterPro: IPR002495; lipopolysaccharide 1,2-glucosyltransferase 3082..4191 Helicobacter pylori 35A 12348634 YP_005769175.1 CDS ecoRIM NC_017360.1 4202 5164 R site-specific DNA-methyltransferase (adenine-specific) complement(4202..5164) Helicobacter pylori 35A 12348635 YP_005769176.1 CDS ecoRIR NC_017360.1 5145 5999 R Pfam: PF02963; InterPro: IPR011336; type II site-specific deoxyribonuclease complement(5145..5999) Helicobacter pylori 35A 12348636 YP_005769177.1 CDS murB NC_017360.1 6003 6782 R COG: COG0812; Pfam: PF02873; InterPro: IPR003170; UDP-N-acetylmuramate dehydrogenase complement(6003..6782) Helicobacter pylori 35A 12348637 YP_005769178.1 CDS fliQ NC_017360.1 6786 7052 R COG: COG1987; Pfam: PF01313; InterPro: IPR006305; flagellar biosynthetic protein FliQ complement(6786..7052) Helicobacter pylori 35A 12348638 YP_005769179.1 CDS fliI NC_017360.1 7063 8367 R COG: COG1157; Pfam: PF00006; InterPro: IPR005714; H(+)-transporting two-sector ATPase complement(7063..8367) Helicobacter pylori 35A 12348639 YP_005769180.1 CDS trbB NC_017360.1 8368 9282 R COG: COG0630; Pfam: PF00437; InterPro: IPR001482; conjugative transfer protein TrbB complement(8368..9282) Helicobacter pylori 35A 12348640 YP_005769181.1 CDS ileS NC_017360.1 9298 12060 R COG: COG0060; Pfam: PF00133, PF08264, PF06827; InterPro: IPR002301; isoleucine--tRNA ligase complement(9298..12060) Helicobacter pylori 35A 12348641 YP_005769182.1 CDS HMPREF4655_20016 NC_017360.1 12093 12350 R COG: COG1188; Pfam: PF01479; S4 domain-containing protein complement(12093..12350) Helicobacter pylori 35A 12348642 YP_005769183.1 CDS HMPREF4655_20017 NC_017360.1 12452 13072 D hypothetical protein 12452..13072 Helicobacter pylori 35A 12348643 YP_005769184.1 CDS HMPREF4655_20018 NC_017360.1 13366 13599 R hypothetical protein complement(13366..13599) Helicobacter pylori 35A 12348644 YP_005769185.1 CDS HMPREF4655_20019 NC_017360.1 13806 14879 R COG: COG0820; Pfam: PF04055; InterPro: IPR004383; Fe-S-cluster redox protein complement(13806..14879) Helicobacter pylori 35A 12348645 YP_005769186.1 CDS kdsD NC_017360.1 14876 15859 R COG: COG0794; Pfam: PF01380, PF00571; InterPro: IPR004800; arabinose-5-phosphate isomerase complement(14876..15859) Helicobacter pylori 35A 12348646 YP_005769187.1 CDS HMPREF4655_20021 NC_017360.1 15849 17933 R COG: COG0595; Pfam: PF00753, PF07521; InterPro: IPR004613; metallo-beta-lactamase complement(15849..17933) Helicobacter pylori 35A 12348647 YP_005769188.1 CDS ksgA NC_017360.1 17967 18782 R COG: COG0030; Pfam: PF00398; InterPro: IPR011530; dimethyladenosine transferase complement(17967..18782) Helicobacter pylori 35A 12348648 YP_005769189.1 CDS HMPREF4655_20023 NC_017360.1 19036 19245 D histidine and glutamine-rich protein 19036..19245 Helicobacter pylori 35A 12348649 YP_005769190.1 CDS HMPREF4655_20024 NC_017360.1 19407 19547 R CagY like protein complement(19407..19547) Helicobacter pylori 35A 12348650 YP_005769191.1 CDS HMPREF4655_20025 NC_017360.1 19669 19821 R hypothetical protein complement(19669..19821) Helicobacter pylori 35A 12348651 YP_005769192.1 CDS HMPREF4655_20026 NC_017360.1 19878 22325 R hypothetical protein complement(19878..22325) Helicobacter pylori 35A 12348652 YP_005769193.1 CDS purU NC_017360.1 22326 23207 R COG: COG0788; Pfam: PF01842, PF00551; InterPro: IPR004810; formyltetrahydrofolate deformylase complement(22326..23207) Helicobacter pylori 35A 12348653 YP_005769194.1 CDS sppA NC_017360.1 23210 24088 R COG: COG0616; Pfam: PF01343; InterPro: IPR004635; signal peptide peptidase SppA complement(23210..24088) Helicobacter pylori 35A 12348654 YP_005769195.1 CDS HMPREF4655_20029 NC_017360.1 24159 24419 D hypothetical protein 24159..24419 Helicobacter pylori 35A 12348655 YP_005769196.1 CDS HMPREF4655_20030 NC_017360.1 24416 24538 R hypothetical protein complement(24416..24538) Helicobacter pylori 35A 12348656 YP_005769197.1 CDS HMPREF4655_20031 NC_017360.1 24626 25192 D hypothetical protein 24626..25192 Helicobacter pylori 35A 12348657 YP_005769198.1 CDS HMPREF4655_20032 NC_017360.1 25342 25833 D hypothetical protein 25342..25833 Helicobacter pylori 35A 12348658 YP_005769199.1 CDS HMPREF4655_20033 NC_017360.1 25837 26301 D hypothetical protein 25837..26301 Helicobacter pylori 35A 12348659 YP_005769200.1 CDS HMPREF4655_20034 NC_017360.1 26707 26973 R hypothetical protein complement(26707..26973) Helicobacter pylori 35A 12348660 YP_005769201.1 CDS HMPREF4655_20035 NC_017360.1 29193 29975 R hypothetical protein complement(29193..29975) Helicobacter pylori 35A 12348662 YP_005769202.1 CDS ppiA NC_017360.1 30093 30584 D COG: COG0652; Pfam: PF00160; InterPro: IPR002130; peptidyl-prolyl cis-trans isomerase 30093..30584 Helicobacter pylori 35A 12348663 YP_005769203.1 CDS csrA NC_017360.1 30602 30832 D COG: COG1551; Pfam: PF02599; InterPro: IPR003751; carbon storage regulator 30602..30832 Helicobacter pylori 35A 12348664 YP_005769204.1 CDS ispE NC_017360.1 30832 31635 D COG: COG1947; Pfam: PF00288; InterPro: IPR004424; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 30832..31635 Helicobacter pylori 35A 12348665 YP_005769205.1 CDS smpB NC_017360.1 31632 32090 D COG: COG0691; Pfam: PF01668; InterPro: IPR000037; SsrA-binding protein 31632..32090 Helicobacter pylori 35A 12348666 YP_005769206.1 CDS exbB NC_017360.1 32093 32545 D COG: COG0811; Pfam: PF01618; InterPro: IPR002898; TonB family auxiliary protein ExbB 32093..32545 Helicobacter pylori 35A 12348667 YP_005769207.1 CDS exbD NC_017360.1 32556 32957 D COG: COG0848; Pfam: PF02472; InterPro: IPR003400; TonB family auxiliary protein ExbD 32556..32957 Helicobacter pylori 35A 12348668 YP_005769208.1 CDS rnpA NC_017360.1 33123 33608 D COG: COG0594; Pfam: PF00825; InterPro: IPR014721; ribonuclease P 33123..33608 Helicobacter pylori 35A 12348669 YP_005769209.1 CDS HMPREF4655_20043 NC_017360.1 33595 33948 D COG: COG0759; Pfam: PF01809; InterPro: IPR002696; hypothetical protein 33595..33948 Helicobacter pylori 35A 12348670 YP_005769210.1 CDS oxaA NC_017360.1 33954 35594 D COG: COG0706; Pfam: PF02096; InterPro: IPR001708; inner membrane protein OxaA 33954..35594 Helicobacter pylori 35A 12348671 YP_005769211.1 CDS HMPREF4655_20045 NC_017360.1 35594 36388 D hypothetical protein 35594..36388 Helicobacter pylori 35A 12348672 YP_005769212.1 CDS trmE NC_017360.1 36381 37733 D COG: COG0486; Pfam: PF01926; InterPro: IPR004520; tRNA modification GTPase TrmE 36381..37733 Helicobacter pylori 35A 12348673 YP_005769213.1 CDS homD NC_017360.1 37939 40173 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein HomD 37939..40173 Helicobacter pylori 35A 12348674 YP_005769214.1 CDS HMPREF4655_20048 NC_017360.1 40267 40395 D hypothetical protein 40267..40395 Helicobacter pylori 35A 12348675 YP_005769215.1 CDS HMPREF4655_20049 NC_017360.1 40675 40821 D hypothetical protein 40675..40821 Helicobacter pylori 35A 12348676 YP_005769216.1 CDS HMPREF4655_20050 NC_017360.1 40846 41757 R hypothetical protein complement(40846..41757) Helicobacter pylori 35A 12348677 YP_005769217.1 CDS HMPREF4655_20051 NC_017360.1 41767 42108 R hypothetical protein complement(41767..42108) Helicobacter pylori 35A 12348678 YP_005769218.1 CDS HMPREF4655_20052 NC_017360.1 42116 42643 R Pfam: PF02169; InterPro: IPR002217; LPP20 lipoprotein complement(42116..42643) Helicobacter pylori 35A 12348679 YP_005769219.1 CDS HMPREF4655_20053 NC_017360.1 42667 43299 R COG: COG3417; InterPro: IPR014094; hypothetical protein complement(42667..43299) Helicobacter pylori 35A 12348680 YP_005769220.1 CDS HMPREF4655_20054 NC_017360.1 43659 43973 R COG: COG0526; Pfam: PF00085; InterPro: IPR012335; thioredoxin complement(43659..43973) Helicobacter pylori 35A 12348681 YP_005769221.1 CDS yciL NC_017360.1 44028 44816 R COG: COG1187; Pfam: PF01479, PF00849; InterPro: IPR000748; RNA pseudouridine synthase complement(44028..44816) Helicobacter pylori 35A 12348682 YP_005769222.1 CDS dnaE NC_017360.1 44798 48433 R COG: COG0587; Pfam: PF02811, PF07733, PF01336; InterPro: IPR004805; DNA-directed DNA polymerase III subunit alpha complement(44798..48433) Helicobacter pylori 35A 12348683 YP_005769223.1 CDS ccpA NC_017360.1 48582 49634 D COG: COG1858; Pfam: PF03150; InterPro: IPR004852; cytochrome-c peroxidase 48582..49634 Helicobacter pylori 35A 12348684 YP_005769224.1 CDS HMPREF4655_20058 NC_017360.1 49816 50403 R Pfam: PF03724; InterPro: IPR005184; secreted protein complement(49816..50403) Helicobacter pylori 35A 12348685 YP_005769225.1 CDS HMPREF4655_20059 NC_017360.1 50422 51099 R hypothetical protein complement(50422..51099) Helicobacter pylori 35A 12348686 YP_005769226.1 CDS HMPREF4655_20060 NC_017360.1 51102 51917 R Pfam: PF02470; InterPro: IPR003399; ABC superfamily ATP binding cassette transporter substrate binding protein complement(51102..51917) Helicobacter pylori 35A 12348687 YP_005769227.1 CDS HMPREF4655_20061 NC_017360.1 51902 52690 R COG: COG1127; Pfam: PF00005; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter ABC protein complement(51902..52690) Helicobacter pylori 35A 12348688 YP_005769228.1 CDS HMPREF4655_20062 NC_017360.1 52687 53820 R COG: COG0767; Pfam: PF02405; InterPro: IPR003453; ABC superfamily ATP binding cassette transporter permease protein complement(52687..53820) Helicobacter pylori 35A 12348689 YP_005769229.1 CDS HMPREF4655_20063 NC_017360.1 53954 54649 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 53954..54649 Helicobacter pylori 35A 12348690 YP_005769230.1 CDS ilvE NC_017360.1 54654 55676 R COG: COG0115; Pfam: PF01063; InterPro: IPR001544; branched-chain-amino-acid transaminase complement(54654..55676) Helicobacter pylori 35A 12348691 YP_005769231.1 CDS HMPREF4655_20065 NC_017360.1 55727 56473 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(55727..56473) Helicobacter pylori 35A 12348692 YP_005769232.1 CDS polA NC_017360.1 56588 59269 R COG: COG0749; Pfam: PF02739, PF01367, PF00476; InterPro: IPR002298; DNA-directed DNA polymerase I complement(56588..59269) Helicobacter pylori 35A 12348693 YP_005769233.1 CDS HMPREF4655_20071 NC_017360.1 62618 63175 R COG: COG1040; Pfam: PF00156; transformation associated protein complement(62618..63175) Helicobacter pylori 35A 12348696 YP_005769234.1 CDS tmk NC_017360.1 63181 63756 R COG: COG0125; Pfam: PF02223; InterPro: IPR000062; thymidylate kinase complement(63181..63756) Helicobacter pylori 35A 12348697 YP_005769235.1 CDS coaD NC_017360.1 63758 64231 R COG: COG0669; Pfam: PF01467; InterPro: IPR001980; pantetheine-phosphate adenylyltransferase complement(63758..64231) Helicobacter pylori 35A 12348698 YP_005769236.1 CDS HMPREF4655_20074 NC_017360.1 64231 64794 R COG: COG0163; Pfam: PF02441; InterPro: IPR003382; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(64231..64794) Helicobacter pylori 35A 12348699 YP_005769237.1 CDS flgA NC_017360.1 64804 65460 R flagellar basal body P-ring biosynthesis protein FlgA complement(64804..65460) Helicobacter pylori 35A 12348700 YP_005769238.1 CDS uvrD NC_017360.1 65457 67502 R COG: COG0210; Pfam: PF00580; InterPro: IPR000212; excision endonuclease subunit UvrD complement(65457..67502) Helicobacter pylori 35A 12348701 YP_005769239.1 CDS HMPREF4655_20077 NC_017360.1 67502 70042 R COG: COG0457; Pfam: PF00515, PF07719; InterPro: IPR011990; hypothetical protein complement(67502..70042) Helicobacter pylori 35A 12348702 YP_005769240.1 CDS serS NC_017360.1 70052 71299 R COG: COG0172; Pfam: PF02403, PF00587; InterPro: IPR002317; serine--tRNA ligase complement(70052..71299) Helicobacter pylori 35A 12348703 YP_005769241.1 CDS HMPREF4655_20079 NC_017360.1 71300 72097 R COG: COG0388; InterPro: IPR003010; hypothetical protein complement(71300..72097) Helicobacter pylori 35A 12348704 YP_005769242.1 CDS xseB NC_017360.1 72101 72370 R InterPro: IPR003761; exodeoxyribonuclease VII small subunit complement(72101..72370) Helicobacter pylori 35A 12348705 YP_005769243.1 CDS ubiE NC_017360.1 72380 73180 R COG: COG2226; Pfam: PF01209; InterPro: IPR004033; ubiquinone/menaquinone biosynthesis methyltransferase complement(72380..73180) Helicobacter pylori 35A 12348706 YP_005769244.1 CDS HMPREF4655_20082 NC_017360.1 73164 73610 R COG: COG1981; Pfam: PF03653; InterPro: IPR005265; integral membrane protein complement(73164..73610) Helicobacter pylori 35A 12348707 YP_005769245.1 CDS HMPREF4655_20083 NC_017360.1 73621 74193 R COG: COG1739; Pfam: PF01205; InterPro: IPR015796; hypothetical protein complement(73621..74193) Helicobacter pylori 35A 12348708 YP_005769246.1 CDS HMPREF4655_20084 NC_017360.1 74180 75310 R COG: COG0842; Pfam: PF01061; ABC superfamily ATP binding cassette transporter permease protein complement(74180..75310) Helicobacter pylori 35A 12348709 YP_005769247.1 CDS HMPREF4655_20085 NC_017360.1 75307 76404 R COG: COG0842; hypothetical protein complement(75307..76404) Helicobacter pylori 35A 12348710 YP_005769248.1 CDS HMPREF4655_20086 NC_017360.1 76416 77405 R COG: COG0845; Pfam: PF00529; InterPro: IPR006143; HlyD family secretion protein complement(76416..77405) Helicobacter pylori 35A 12348711 YP_005769249.1 CDS HMPREF4655_20087 NC_017360.1 77417 78949 R COG: COG1538; Pfam: PF02321; InterPro: IPR003423; lipase family protein complement(77417..78949) Helicobacter pylori 35A 12348712 YP_005769250.1 CDS HMPREF4655_20088 NC_017360.1 78946 80295 R COG: COG1253; Pfam: PF01595, PF00571, PF03471; InterPro: IPR002550; hypothetical protein complement(78946..80295) Helicobacter pylori 35A 12348713 YP_005769251.1 CDS HMPREF4655_20089 NC_017360.1 80396 82042 R COG: COG0306; Pfam: PF01384; InterPro: IPR001204; phosphate permease complement(80396..82042) Helicobacter pylori 35A 12348714 YP_005769252.1 CDS HMPREF4655_20090 NC_017360.1 82138 82407 D COG: COG0694; Pfam: PF01106; InterPro: IPR001075; NifU family protein 82138..82407 Helicobacter pylori 35A 12348715 YP_005769253.1 CDS HMPREF4655_20091 NC_017360.1 82419 83030 D hypothetical protein 82419..83030 Helicobacter pylori 35A 12348716 YP_005769254.1 CDS murE NC_017360.1 83034 84377 D COG: COG0769; Pfam: PF08245, PF02875; InterPro: IPR005761; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 83034..84377 Helicobacter pylori 35A 12348717 YP_005769255.1 CDS tal NC_017360.1 84381 85331 D COG: COG0176; Pfam: PF00923; InterPro: IPR004732; transaldolase 84381..85331 Helicobacter pylori 35A 12348718 YP_005769256.1 CDS rplY NC_017360.1 85386 85922 D COG: COG1825; Pfam: PF01386; InterPro: IPR001021; 50S ribosomal protein L25 85386..85922 Helicobacter pylori 35A 12348719 YP_005769257.1 CDS pth NC_017360.1 85933 86415 D COG: COG0193; Pfam: PF01195; InterPro: IPR001328; aminoacyl-tRNA hydrolase 85933..86415 Helicobacter pylori 35A 12348720 YP_005769258.1 CDS HMPREF4655_20096 NC_017360.1 86504 87571 D COG: COG0795; Pfam: PF03739; InterPro: IPR005495; hypothetical protein 86504..87571 Helicobacter pylori 35A 12348721 YP_005769259.1 CDS HMPREF4655_20097 NC_017360.1 87680 88603 D hypothetical protein 87680..88603 Helicobacter pylori 35A 12348722 YP_005769260.1 CDS HMPREF4655_20098 NC_017360.1 88892 90043 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(88892..90043) Helicobacter pylori 35A 12348723 YP_005769261.1 CDS HMPREF4655_20099 NC_017360.1 90220 90675 D COG: COG3399; Pfam: PF04323; InterPro: IPR007418; hypothetical protein 90220..90675 Helicobacter pylori 35A 12348724 YP_005769262.1 CDS HMPREF4655_20100 NC_017360.1 90672 93023 R COG: COG2217; Pfam: PF00403, PF00122, PF00702; InterPro: IPR001757; P-ATPase superfamily P-type ATPase copper transporter complement(90672..93023) Helicobacter pylori 35A 12348725 YP_005769263.1 CDS HMPREF4655_20101 NC_017360.1 93049 93765 R COG: COG4123; Pfam: PF08242; methyltransferase complement(93049..93765) Helicobacter pylori 35A 12348726 YP_005769264.1 CDS ribD NC_017360.1 93747 94781 R Pfam: PF00383; InterPro: IPR004794; riboflavin biosynthesis protein RibD complement(93747..94781) Helicobacter pylori 35A 12348727 YP_005769265.1 CDS gltS NC_017360.1 94778 96025 R COG: COG0786; Pfam: PF03616; InterPro: IPR004445; ESS family glutamate:sodium (Na+) symporter complement(94778..96025) Helicobacter pylori 35A 12348728 YP_005769266.1 CDS lys NC_017360.1 96090 97289 D COG: COG1748; Pfam: PF03435; InterPro: IPR005097; saccharopine dehydrogenase 96090..97289 Helicobacter pylori 35A 12348729 YP_005769267.1 CDS ccoG NC_017360.1 97299 98675 R COG: COG0348; InterPro: IPR014116; cytochrome c oxidase accessory protein CcoG complement(97299..98675) Helicobacter pylori 35A 12348730 YP_005769268.1 CDS plsY NC_017360.1 98655 99443 D COG: COG0344; Pfam: PF02660; InterPro: IPR003811; acyl-phosphate glycerol 3-phosphate acyltransferase 98655..99443 Helicobacter pylori 35A 12348731 YP_005769269.1 CDS folB NC_017360.1 99440 99793 D Pfam: PF02152; InterPro: IPR006157; dihydroneopterin aldolase 99440..99793 Helicobacter pylori 35A 12348732 YP_005769270.1 CDS HMPREF4655_20108 NC_017360.1 99777 100103 D COG: COG1629; FrpB family protein 99777..100103 Helicobacter pylori 35A 12348733 YP_005769271.1 CDS frpB NC_017360.1 100272 102863 D COG: COG1629; Pfam: PF07715, PF00593; InterPro: IPR000531; iron-regulated outer membrane protein 100272..102863 Helicobacter pylori 35A 12348734 YP_005769272.1 CDS selA NC_017360.1 103092 104252 D COG: COG1921; Pfam: PF03841; InterPro: IPR004534; L-seryl-tRNA(Sec) selenium transferase 103092..104252 Helicobacter pylori 35A 12348735 YP_005769273.1 CDS nusA NC_017360.1 104340 105527 D COG: COG0195; InterPro: IPR010213; transcription termination factor NusA 104340..105527 Helicobacter pylori 35A 12348736 YP_005769274.1 CDS HMPREF4655_20112 NC_017360.1 105836 109654 R COG: COG1002; Pfam: PF07669; type II restriction-modification enzyme complement(105836..109654) Helicobacter pylori 35A 12348737 YP_005769275.1 CDS res NC_017360.1 109760 112675 R COG: COG3587; Pfam: PF04851; type III restriction enzyme R protein complement(109760..112675) Helicobacter pylori 35A 12348738 YP_005769276.1 CDS HMPREF4655_20114 NC_017360.1 112678 113283 R hypothetical protein complement(112678..113283) Helicobacter pylori 35A 12348739 YP_005769277.1 CDS mod2 NC_017360.1 113264 114601 R COG: COG2189; Pfam: PF01555; InterPro: IPR002941; type III DNA modification enzyme (methyltransferase) complement(113264..114601) Helicobacter pylori 35A 12348740 YP_005769278.1 CDS recG NC_017360.1 114644 116509 R COG: COG1200; Pfam: PF00270, PF00271; InterPro: IPR004609; DNA helicase RecG complement(114644..116509) Helicobacter pylori 35A 12348741 YP_005769279.1 CDS HMPREF4655_20117 NC_017360.1 116591 116944 D hypothetical protein 116591..116944 Helicobacter pylori 35A 12348742 YP_005769280.1 CDS horD NC_017360.1 116948 117583 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein HorD 116948..117583 Helicobacter pylori 35A 12348743 YP_005769281.1 CDS xthA NC_017360.1 117580 118332 R COG: COG0708; Pfam: PF03372; InterPro: IPR004808; exodeoxyribonuclease III complement(117580..118332) Helicobacter pylori 35A 12348744 YP_005769282.1 CDS HMPREF4655_20120 NC_017360.1 118510 119943 R periplasmic competence protein complement(118510..119943) Helicobacter pylori 35A 12348746 YP_005769283.1 CDS dnaA NC_017360.1 120165 121532 R COG: COG0593; Pfam: PF00308, PF08299; InterPro: IPR001957; DNA-directed DNA replication initiator protein complement(120165..121532) Helicobacter pylori 35A 12348747 YP_005769284.1 CDS punB NC_017360.1 121684 122220 D purine nucleoside phosphorylase 121684..122220 Helicobacter pylori 35A 12348748 YP_005769285.1 CDS HMPREF4655_20123 NC_017360.1 122267 122506 D hypothetical protein 122267..122506 Helicobacter pylori 35A 12348749 YP_005769286.1 CDS glmS NC_017360.1 122507 124300 D COG: COG0449; Pfam: PF00310, PF01380; InterPro: IPR005855; glutamine--fructose-6-phosphate transaminase (isomerizing) 122507..124300 Helicobacter pylori 35A 12348750 YP_005769287.1 CDS thyX NC_017360.1 124322 124948 D COG: COG1351; Pfam: PF02511; InterPro: IPR003669; thymidylate synthase (FAD) 124322..124948 Helicobacter pylori 35A 12348751 YP_005769288.1 CDS HMPREF4655_20126 NC_017360.1 125282 126403 R COG: COG0732; Pfam: PF01420; InterPro: IPR000055; type I R-M system specificity subunit complement(125282..126403) Helicobacter pylori 35A 12348752 YP_005769289.1 CDS HMPREF4655_20127 NC_017360.1 126391 127167 R hypothetical protein complement(126391..127167) Helicobacter pylori 35A 12348753 YP_005769290.1 CDS HMPREF4655_20128 NC_017360.1 127255 129717 R COG: COG0286; Pfam: PF02384; InterPro: IPR004546; type I restriction-modification system protein complement(127255..129717) Helicobacter pylori 35A 12348754 YP_005769291.1 CDS hsdR NC_017360.1 129782 132757 D COG: COG0610; Pfam: PF04313, PF04851; InterPro: IPR004473; type I restriction enzyme R protein 129782..132757 Helicobacter pylori 35A 12348755 YP_005769292.1 CDS phnI NC_017360.1 132757 133464 D COG: COG1451; Pfam: PF01863; InterPro: IPR002725; phosphonate metabolism protein PhnI 132757..133464 Helicobacter pylori 35A 12348756 YP_005769293.1 CDS HMPREF4655_20133 NC_017360.1 136403 136576 D hypothetical protein 136403..136576 Helicobacter pylori 35A 12348758 YP_005769294.1 CDS rocF NC_017360.1 136584 137552 R COG: COG0010; Pfam: PF00491; InterPro: IPR014033; arginase complement(136584..137552) Helicobacter pylori 35A 12348759 YP_005769295.1 CDS lysP NC_017360.1 137565 138992 R COG: COG0833; Pfam: PF00324; InterPro: IPR004841; APC family lysine-specific permease complement(137565..138992) Helicobacter pylori 35A 12348760 YP_005769296.1 CDS ald2 NC_017360.1 139192 140334 D COG: COG0686; Pfam: PF05222, PF01262; InterPro: IPR007698; alanine dehydrogenase 139192..140334 Helicobacter pylori 35A 12348761 YP_005769297.1 CDS HMPREF4655_20139 NC_017360.1 142221 142949 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(142221..142949) Helicobacter pylori 35A 12348763 YP_005769298.1 CDS HMPREF4655_20140 NC_017360.1 142946 143113 R hypothetical protein complement(142946..143113) Helicobacter pylori 35A 12348764 YP_005769299.1 CDS ppnK NC_017360.1 143135 143989 D COG: COG0061; Pfam: PF01513; InterPro: IPR002504; NAD(+) kinase 143135..143989 Helicobacter pylori 35A 12348765 YP_005769300.1 CDS recN NC_017360.1 144002 145576 D COG: COG0497; Pfam: PF02463; DNA repair protein RecN 144002..145576 Helicobacter pylori 35A 12348766 YP_005769301.1 CDS HMPREF4655_20143 NC_017360.1 145573 146880 D COG: COG1293; Pfam: PF05670; InterPro: IPR008532; fibronectin/fibrinogen-binding protein 145573..146880 Helicobacter pylori 35A 12348767 YP_005769302.1 CDS HMPREF4655_20144 NC_017360.1 146899 147195 D hypothetical protein 146899..147195 Helicobacter pylori 35A 12348768 YP_005769303.1 CDS HMPREF4655_20145 NC_017360.1 147398 147622 D hypothetical protein 147398..147622 Helicobacter pylori 35A 12348769 YP_005769304.1 CDS dnaQ NC_017360.1 147813 148676 R COG: COG0847; Pfam: PF00929; InterPro: IPR006054; DNA polymerase III subunit epsilon complement(147813..148676) Helicobacter pylori 35A 12348770 YP_005769305.1 CDS rpe NC_017360.1 148654 149307 R COG: COG0036; Pfam: PF00834; InterPro: IPR013785; ribulose-phosphate 3-epimerase complement(148654..149307) Helicobacter pylori 35A 12348771 YP_005769306.1 CDS fbp NC_017360.1 149378 150250 D COG: COG0158; Pfam: PF00316; InterPro: IPR000146; fructose-bisphosphatase 149378..150250 Helicobacter pylori 35A 12348772 YP_005769307.1 CDS HMPREF4655_20149 NC_017360.1 150247 150453 D hypothetical protein 150247..150453 Helicobacter pylori 35A 12348773 YP_005769308.1 CDS HMPREF4655_20150 NC_017360.1 150465 151361 D type II methylase protein 150465..151361 Helicobacter pylori 35A 12348774 YP_005769309.1 CDS HMPREF4655_20151 NC_017360.1 151354 152085 D hypothetical protein 151354..152085 Helicobacter pylori 35A 12348775 YP_005769310.1 CDS dcm NC_017360.1 152273 153160 R COG: COG0270; Pfam: PF00145; InterPro: IPR001525; site-specific DNA-methyltransferase complement(152273..153160) Helicobacter pylori 35A 12348776 YP_005769311.1 CDS dcm2 NC_017360.1 153322 153528 R Pfam: PF00145; site-specific DNA-methyltransferase complement(153322..153528) Helicobacter pylori 35A 12348777 YP_005769312.1 CDS HMPREF4655_20154 NC_017360.1 153518 153679 R hypothetical protein complement(153518..153679) Helicobacter pylori 35A 12348778 YP_005769313.1 CDS HMPREF4655_20155 NC_017360.1 153660 154613 R hypothetical protein complement(153660..154613) Helicobacter pylori 35A 12348779 YP_005769314.1 CDS tsf NC_017360.1 154672 155739 R COG: COG0264; Pfam: PF00627, PF00889; InterPro: IPR001816; elongation factor EF1B complement(154672..155739) Helicobacter pylori 35A 12348780 YP_005769315.1 CDS rpsB NC_017360.1 155739 156617 R COG: COG0052; Pfam: PF00318; InterPro: IPR005706; 30S ribosomal protein S2 complement(155739..156617) Helicobacter pylori 35A 12348781 YP_005769316.1 CDS HMPREF4655_20158 NC_017360.1 156784 159633 D COG: COG1074; Pfam: PF00580; InterPro: IPR000212; helicase 156784..159633 Helicobacter pylori 35A 12348782 YP_005769317.1 CDS nhaA NC_017360.1 159624 160973 D COG: COG3004; Pfam: PF06965; InterPro: IPR004670; NhaA family sodium:proton (Na+:H+) antiporter 159624..160973 Helicobacter pylori 35A 12348783 YP_005769318.1 CDS yajC NC_017360.1 161020 161313 D COG: COG1862; Pfam: PF02699; InterPro: IPR003849; preprotein translocase 161020..161313 Helicobacter pylori 35A 12348784 YP_005769319.1 CDS secD NC_017360.1 161313 162890 D COG: COG0342; Pfam: PF07549, PF02355; InterPro: IPR005791; protein-export membrane protein SecD 161313..162890 Helicobacter pylori 35A 12348785 YP_005769320.1 CDS secF NC_017360.1 162900 163871 D COG: COG0341; Pfam: PF07549, PF02355; InterPro: IPR005665; protein-export membrane protein SecF 162900..163871 Helicobacter pylori 35A 12348786 YP_005769321.1 CDS HMPREF4655_20163 NC_017360.1 163881 164219 D hypothetical protein 163881..164219 Helicobacter pylori 35A 12348787 YP_005769322.1 CDS leuS NC_017360.1 164229 166649 D COG: COG0495; Pfam: PF00133; InterPro: IPR002302; leucyl-tRNA synthetase 164229..166649 Helicobacter pylori 35A 12348788 YP_005769323.1 CDS HMPREF4655_20165 NC_017360.1 166646 167158 D hypothetical protein 166646..167158 Helicobacter pylori 35A 12348789 YP_005769324.1 CDS folC NC_017360.1 167148 168317 D COG: COG0285; InterPro: IPR001645; tetrahydrofolate synthase 167148..168317 Helicobacter pylori 35A 12348790 YP_005769325.1 CDS tagE NC_017360.1 168317 169243 D COG: COG0739; Pfam: PF01551; InterPro: IPR002886; ToxR-activated protein 168317..169243 Helicobacter pylori 35A 12348791 YP_005769326.1 CDS tagE2 NC_017360.1 169279 169968 D COG: COG0739; Pfam: PF01551; InterPro: IPR002886; ToxR-activated protein 169279..169968 Helicobacter pylori 35A 12348792 YP_005769327.1 CDS HMPREF4655_20169 NC_017360.1 170107 170517 D COG: COG1664; Pfam: PF04519; InterPro: IPR007607; hypothetical protein 170107..170517 Helicobacter pylori 35A 12348793 YP_005769328.1 CDS trcF NC_017360.1 170521 173520 D COG: COG1197; Pfam: PF02559, PF00270, PF00271, PF03461; InterPro: IPR004576; transcription-repair coupling factor 170521..173520 Helicobacter pylori 35A 12348794 YP_005769329.1 CDS petA NC_017360.1 173647 174150 D COG: COG0723; Pfam: PF00355; InterPro: IPR006317; Ubiquinol--cytochrome-c reductase 173647..174150 Helicobacter pylori 35A 12348795 YP_005769330.1 CDS petB NC_017360.1 174161 175399 D COG: COG1290; Pfam: PF00033, PF00032; InterPro: IPR016175; ubiquinol--cytochrome c reductase subunit B 174161..175399 Helicobacter pylori 35A 12348796 YP_005769331.1 CDS fbcC NC_017360.1 175396 176253 D COG: COG2857; Pfam: PF00034, PF02167; ubiquinol-cytochrome c reductase cytochrome c1 subunit 175396..176253 Helicobacter pylori 35A 12348797 YP_005769332.1 CDS HMPREF4655_20174 NC_017360.1 176460 176708 R hypothetical protein complement(176460..176708) Helicobacter pylori 35A 12348798 YP_005769333.1 CDS HMPREF4655_20175 NC_017360.1 176705 177130 R hypothetical protein complement(176705..177130) Helicobacter pylori 35A 12348799 YP_005769334.1 CDS HMPREF4655_20176 NC_017360.1 177090 178238 R COG: COG1106; hypothetical protein complement(177090..178238) Helicobacter pylori 35A 12348800 YP_005769335.1 CDS ftsI NC_017360.1 178429 180273 R COG: COG0768; Pfam: PF03717, PF00905; InterPro: IPR001460; cell division protein FtsI complement(178429..180273) Helicobacter pylori 35A 12348801 YP_005769336.1 CDS HMPREF4655_20178 NC_017360.1 180280 180405 R transcriptional regulator AsnC family protein complement(180280..180405) Helicobacter pylori 35A 12348802 YP_005769337.1 CDS fliE NC_017360.1 180429 180758 R COG: COG1677; Pfam: PF02049; InterPro: IPR001624; flagellar hook-basal body complex protein FliE complement(180429..180758) Helicobacter pylori 35A 12348803 YP_005769338.1 CDS flgC NC_017360.1 180886 181371 R COG: COG1558; Pfam: PF00460, PF06429; InterPro: IPR006299; flagellar basal-body rod protein FlgC complement(180886..181371) Helicobacter pylori 35A 12348804 YP_005769339.1 CDS flgB NC_017360.1 181384 181806 R COG: COG1815; Pfam: PF00460; InterPro: IPR006300; flagellar basal-body rod protein FlgB complement(181384..181806) Helicobacter pylori 35A 12348805 YP_005769340.1 CDS ftsW NC_017360.1 182013 183179 D COG: COG0772; Pfam: PF01098; InterPro: IPR001182; FtsW/RodA/SpoVE family cell division protein 182013..183179 Helicobacter pylori 35A 12348806 YP_005769341.1 CDS ceuE NC_017360.1 183203 184204 R COG: COG0614; Pfam: PF01497; iron(III) ABC superfamily ATP binding cassette transporter complement(183203..184204) Helicobacter pylori 35A 12348807 YP_005769342.1 CDS tsaA NC_017360.1 184403 185038 D COG: COG0450; Pfam: PF00578; InterPro: IPR012335; peroxiredoxin 184403..185038 Helicobacter pylori 35A 12348808 YP_005769343.1 CDS metQ NC_017360.1 185184 185999 D COG: COG1464; Pfam: PF03180; InterPro: IPR004872; ABC superfamily ATP binding cassette transporter, binding protein 185184..185999 Helicobacter pylori 35A 12348809 YP_005769344.1 CDS mrdA NC_017360.1 186068 187843 R COG: COG0768; Pfam: PF03717, PF00905; InterPro: IPR001460; penicillin-binding protein 2 complement(186068..187843) Helicobacter pylori 35A 12348810 YP_005769345.1 CDS HMPREF4655_20187 NC_017360.1 187824 188267 R hypothetical protein complement(187824..188267) Helicobacter pylori 35A 12348811 YP_005769346.1 CDS ysxC NC_017360.1 188280 188906 R COG: COG0218; Pfam: PF01926; InterPro: IPR002917; ribosome biogenesis GTP-binding protein YsxC complement(188280..188906) Helicobacter pylori 35A 12348812 YP_005769347.1 CDS lptA NC_017360.1 188903 189460 R COG: COG1934; Pfam: PF03968; InterPro: IPR005653; lipopolysaccharide ABC superfamily ATP binding cassette transporter, permease protein complement(188903..189460) Helicobacter pylori 35A 12348813 YP_005769348.1 CDS HMPREF4655_20190 NC_017360.1 189460 190053 R hypothetical protein complement(189460..190053) Helicobacter pylori 35A 12348814 YP_005769349.1 CDS kdsC NC_017360.1 190028 190522 R COG: COG1778; Pfam: PF08282; InterPro: IPR010023; 3-deoxy-manno-octulosonate-8-phosphatase complement(190028..190522) Helicobacter pylori 35A 12348815 YP_005769350.1 CDS rlpA NC_017360.1 190519 191466 R COG: COG0797; Pfam: PF03330, PF05036; InterPro: IPR012997; lipoprotein A complement(190519..191466) Helicobacter pylori 35A 12348816 YP_005769351.1 CDS dniR NC_017360.1 191466 192584 R COG: COG0741; Pfam: PF01464, PF01476; InterPro: IPR008258; regulatory protein DniR complement(191466..192584) Helicobacter pylori 35A 12348817 YP_005769352.1 CDS HMPREF4655_20194 NC_017360.1 192673 193437 R COG: COG0084; Pfam: PF01026; InterPro: IPR015991; TatD family hydrolase complement(192673..193437) Helicobacter pylori 35A 12348818 YP_005769353.1 CDS ribE NC_017360.1 193512 194132 D COG: COG0307; Pfam: PF00677; InterPro: IPR001783; riboflavin synthase subunit alpha 193512..194132 Helicobacter pylori 35A 12348819 YP_005769354.1 CDS HMPREF4655_20196 NC_017360.1 194133 194405 D COG: COG2257; Pfam: PF01312; InterPro: IPR004683; FlhB domain-containing protein 194133..194405 Helicobacter pylori 35A 12348820 YP_005769355.1 CDS HMPREF4655_20197 NC_017360.1 194427 195410 D COG: COG1135; Pfam: PF00005, PF08352; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC protein 194427..195410 Helicobacter pylori 35A 12348821 YP_005769356.1 CDS HMPREF4655_20198 NC_017360.1 195412 196059 D COG: COG2011; Pfam: PF00528; ABC superfamily ATP binding cassette transporter, membrane protein 195412..196059 Helicobacter pylori 35A 12348822 YP_005769357.1 CDS HMPREF4655_20199 NC_017360.1 196246 196677 R hypothetical protein complement(196246..196677) Helicobacter pylori 35A 12348823 YP_005769358.1 CDS HMPREF4655_20200 NC_017360.1 196687 197283 R Pfam: PF01569; InterPro: IPR000326; hypothetical protein complement(196687..197283) Helicobacter pylori 35A 12348824 YP_005769359.1 CDS llm NC_017360.1 197283 198236 R COG: COG0472; Pfam: PF00953; InterPro: IPR000715; undecaprenyl phosphate N-acetylglucosaminyltransferase complement(197283..198236) Helicobacter pylori 35A 12348825 YP_005769360.1 CDS pdxJ NC_017360.1 198426 199214 D COG: COG0854; Pfam: PF03740; InterPro: IPR013785; pyridoxine 5'-phosphate synthase 198426..199214 Helicobacter pylori 35A 12348826 YP_005769361.1 CDS pdxA NC_017360.1 199216 200139 D COG: COG1995; Pfam: PF04166; InterPro: IPR005255; 4-hydroxythreonine-4-phosphate dehydrogenase 199216..200139 Helicobacter pylori 35A 12348827 YP_005769362.1 CDS gcp NC_017360.1 200202 201227 D COG: COG0533; Pfam: PF00814; InterPro: IPR000905; O-sialoglycoprotein endopeptidase 200202..201227 Helicobacter pylori 35A 12348828 YP_005769363.1 CDS flgG NC_017360.1 202098 202886 D COG: COG4786; Pfam: PF00460, PF06429; InterPro: IPR012834; flagellar basal-body rod protein FlgG 202098..202886 Helicobacter pylori 35A 12348829 YP_005769364.1 CDS HMPREF4655_20206 NC_017360.1 203574 204335 R COG: COG4735; Pfam: PF03667; InterPro: IPR005367; hypothetical protein complement(203574..204335) Helicobacter pylori 35A 12348830 YP_005769365.1 CDS nusB NC_017360.1 204604 205020 R COG: COG0781; Pfam: PF01029; InterPro: IPR006027; transcription antitermination factor NusB complement(204604..205020) Helicobacter pylori 35A 12348831 YP_005769366.1 CDS ribH NC_017360.1 205022 205492 R COG: COG0054; Pfam: PF00885; InterPro: IPR002180; 6,7-dimethyl-8-ribityllumazine synthase complement(205022..205492) Helicobacter pylori 35A 12348832 YP_005769367.1 CDS kdsA NC_017360.1 205502 206332 R COG: COG2877; Pfam: PF00793; InterPro: IPR006218; 3-deoxy-7-phosphoheptulonate synthase complement(205502..206332) Helicobacter pylori 35A 12348833 YP_005769368.1 CDS cynT NC_017360.1 206319 206984 R COG: COG0288; Pfam: PF00484; InterPro: IPR001765; carbonate dehydratase complement(206319..206984) Helicobacter pylori 35A 12348834 YP_005769369.1 CDS pyrF NC_017360.1 207106 207789 D COG: COG0284; Pfam: PF00215; InterPro: IPR013785; orotidine-5'-phosphate decarboxylase 207106..207789 Helicobacter pylori 35A 12348835 YP_005769370.1 CDS panC NC_017360.1 207790 208620 D COG: COG0414; Pfam: PF02569; InterPro: IPR003721; pantoate--beta-alanine ligase 207790..208620 Helicobacter pylori 35A 12348836 YP_005769371.1 CDS hopZ NC_017360.1 209810 212083 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein HopZ complement(209810..212083) Helicobacter pylori 35A 12348842 YP_005769372.1 CDS groEL NC_017360.1 212261 213901 R COG: COG0459; Pfam: PF00118; InterPro: IPR002423; chaperonin GroEL complement(212261..213901) Helicobacter pylori 35A 12348843 YP_005769373.1 CDS groES NC_017360.1 213926 214282 R COG: COG0234; Pfam: PF00166; InterPro: IPR001476; chaperone GroES complement(213926..214282) Helicobacter pylori 35A 12348844 YP_005769374.1 CDS dnaG NC_017360.1 214557 216236 D COG: COG0358; Pfam: PF01807, PF08275, PF01751; InterPro: IPR006295; DNA primase 214557..216236 Helicobacter pylori 35A 12348845 YP_005769375.1 CDS trmU NC_017360.1 216233 217285 D COG: COG0482; Pfam: PF06508; tRNA methyltransferase 216233..217285 Helicobacter pylori 35A 12348846 YP_005769376.1 CDS HMPREF4655_20218 NC_017360.1 217376 218203 D hypothetical protein 217376..218203 Helicobacter pylori 35A 12348847 YP_005769377.1 CDS HMPREF4655_20219 NC_017360.1 218348 218629 D hypothetical protein 218348..218629 Helicobacter pylori 35A 12348848 YP_005769378.1 CDS HMPREF4655_20220 NC_017360.1 218629 218892 D hypothetical protein 218629..218892 Helicobacter pylori 35A 12348849 YP_005769379.1 CDS virB4 NC_017360.1 218894 221257 D COG: COG3451; Pfam: PF03135; InterPro: IPR004346; DNA transfer protein 218894..221257 Helicobacter pylori 35A 12348850 YP_005769380.1 CDS HMPREF4655_20222 NC_017360.1 221488 222918 D COG: COG3014; hypothetical protein 221488..222918 Helicobacter pylori 35A 12348852 YP_005769381.1 CDS cheV NC_017360.1 223019 223984 D COG: COG0835; Pfam: PF01584, PF00072; InterPro: IPR002545; chemotaxis protein 223019..223984 Helicobacter pylori 35A 12348853 YP_005769382.1 CDS nspC NC_017360.1 223981 225198 D COG: COG0019; Pfam: PF00278; InterPro: IPR005730; carboxynorspermidine decarboxylase 223981..225198 Helicobacter pylori 35A 12348854 YP_005769383.1 CDS HMPREF4655_20225 NC_017360.1 225208 225780 R Pfam: PF01569; InterPro: IPR000326; lipid A 1-phosphatase complement(225208..225780) Helicobacter pylori 35A 12348855 YP_005769384.1 CDS HMPREF4655_20226 NC_017360.1 225791 227356 R COG: COG2194; Pfam: PF08019, PF00884; InterPro: IPR000917; integral membrane protein complement(225791..227356) Helicobacter pylori 35A 12348856 YP_005769385.1 CDS HMPREF4655_20227 NC_017360.1 227441 227569 R hypothetical protein complement(227441..227569) Helicobacter pylori 35A 12348857 YP_005769386.1 CDS hopD NC_017360.1 227739 229805 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein HopD complement(227739..229805) Helicobacter pylori 35A 12348858 YP_005769387.1 CDS HMPREF4655_20229 NC_017360.1 229802 229990 R hypothetical protein complement(229802..229990) Helicobacter pylori 35A 12348859 YP_005769388.1 CDS HMPREF4655_20230 NC_017360.1 230051 230443 D COG: COG1864; Pfam: PF01223; InterPro: IPR001604; hypothetical protein 230051..230443 Helicobacter pylori 35A 12348860 YP_005769389.1 CDS tyrA NC_017360.1 230725 231552 R COG: COG0287; Pfam: PF02153; InterPro: IPR003099; prephenate dehydrogenase complement(230725..231552) Helicobacter pylori 35A 12348861 YP_005769390.1 CDS lon NC_017360.1 231577 234054 R COG: COG0466; Pfam: PF02190, PF00004, PF05362; InterPro: IPR004815; endopeptidase La complement(231577..234054) Helicobacter pylori 35A 12348862 YP_005769391.1 CDS comL NC_017360.1 234095 234757 R COG: COG4105; competence lipoprotein complement(234095..234757) Helicobacter pylori 35A 12348863 YP_005769392.1 CDS HMPREF4655_20234 NC_017360.1 234800 234946 R hypothetical protein complement(234800..234946) Helicobacter pylori 35A 12348864 YP_005769393.1 CDS fliW NC_017360.1 235080 235547 D COG: COG1699; Pfam: PF02623; InterPro: IPR003775; flagellar assembly factor FliW 235080..235547 Helicobacter pylori 35A 12348865 YP_005769394.1 CDS HMPREF4655_20236 NC_017360.1 235508 235711 R flavoprotein oxidoreductase complement(235508..235711) Helicobacter pylori 35A 12348866 YP_005769395.1 CDS fabZ NC_017360.1 235732 236211 D COG: COG0764; Pfam: PF07977; InterPro: IPR010084; (3R)-hydroxymyristoyl-ACP dehydratase 235732..236211 Helicobacter pylori 35A 12348867 YP_005769396.1 CDS lpxA NC_017360.1 236215 237027 D COG: COG1043; Pfam: PF00132; InterPro: IPR010137; acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase 236215..237027 Helicobacter pylori 35A 12348868 YP_005769397.1 CDS clpX NC_017360.1 237029 238375 D COG: COG1219; Pfam: PF07724; InterPro: IPR004487; ATP-dependent Clp protease ATP-binding subunit 237029..238375 Helicobacter pylori 35A 12348869 YP_005769398.1 CDS mreB NC_017360.1 238417 239460 D COG: COG1077; Pfam: PF06723; InterPro: IPR004753; rod shape-determining protein MreB 238417..239460 Helicobacter pylori 35A 12348870 YP_005769399.1 CDS mreC NC_017360.1 239464 240210 D COG: COG1792; Pfam: PF04085; InterPro: IPR007221; rod shape-determining protein MreC 239464..240210 Helicobacter pylori 35A 12348871 YP_005769400.1 CDS HMPREF4655_20242 NC_017360.1 240267 243170 R Pfam: PF04851; type III restriction enzyme R protein complement(240267..243170) Helicobacter pylori 35A 12348872 YP_005769401.1 CDS mjaIM NC_017360.1 245681 246544 D COG: COG0863; Pfam: PF01555; InterPro: IPR002941; site-specific DNA-methyltransferase (cytosine-N(4)-specific) 245681..246544 Helicobacter pylori 35A 12348874 YP_005769402.1 CDS mboIIM NC_017360.1 246531 247313 D COG: COG0863; Pfam: PF01555; InterPro: IPR002941; site-specific DNA-methyltransferase (adenine-specific) 246531..247313 Helicobacter pylori 35A 12348875 YP_005769403.1 CDS mboIIR NC_017360.1 247329 248603 D typeIIS restriction enzyme 247329..248603 Helicobacter pylori 35A 12348876 YP_005769404.1 CDS HMPREF4655_20249 NC_017360.1 248691 249332 D COG: COG0745; Pfam: PF00072, PF00486; InterPro: IPR001789; response regulator 248691..249332 Helicobacter pylori 35A 12348877 YP_005769405.1 CDS HMPREF4655_20250 NC_017360.1 249367 250500 D COG: COG0642; Pfam: PF00512, PF02518; InterPro: IPR003594; sensor histidine kinase 249367..250500 Helicobacter pylori 35A 12348878 YP_005769406.1 CDS HMPREF4655_20251 NC_017360.1 250503 251897 D COG: COG0063; Pfam: PF03853, PF01256; InterPro: IPR000631; sugar kinase 250503..251897 Helicobacter pylori 35A 12348879 YP_005769407.1 CDS dnaB NC_017360.1 251908 253374 D COG: COG0305; Pfam: PF00772, PF03796; InterPro: IPR007692; replicative DNA helicase DnaB 251908..253374 Helicobacter pylori 35A 12348880 YP_005769408.1 CDS comE NC_017360.1 253371 254684 D COG: COG0658; Pfam: PF03772; InterPro: IPR004477; competence locus E 253371..254684 Helicobacter pylori 35A 12348881 YP_005769409.1 CDS ubiA NC_017360.1 254713 255597 D COG: COG0382; Pfam: PF01040; InterPro: IPR006371; prenyltransferase 254713..255597 Helicobacter pylori 35A 12348882 YP_005769410.1 CDS HMPREF4655_20255 NC_017360.1 255590 256084 D hypothetical protein 255590..256084 Helicobacter pylori 35A 12348883 YP_005769411.1 CDS HMPREF4655_20256 NC_017360.1 256097 256600 D hypothetical protein 256097..256600 Helicobacter pylori 35A 12348884 YP_005769412.1 CDS psd NC_017360.1 256597 257403 D COG: COG0688; Pfam: PF02666; InterPro: IPR005221; phosphatidylserine decarboxylase 256597..257403 Helicobacter pylori 35A 12348885 YP_005769413.1 CDS nadA NC_017360.1 257390 258400 D COG: COG0379; Pfam: PF02445; InterPro: IPR003473; quinolinate synthetase 257390..258400 Helicobacter pylori 35A 12348886 YP_005769414.1 CDS nadC NC_017360.1 258400 259221 D COG: COG0157; Pfam: PF02749, PF01729; InterPro: IPR004393; nicotinate-nucleotide diphosphorylase 258400..259221 Helicobacter pylori 35A 12348887 YP_005769415.1 CDS HMPREF4655_20260 NC_017360.1 259245 261773 D adenine specific DNA methyltransferase 259245..261773 Helicobacter pylori 35A 12348888 YP_005769416.1 CDS hinfIM NC_017360.1 262954 264033 D COG: COG0863; Pfam: PF01555; InterPro: IPR002941; site-specific DNA-methyltransferase (adenine-specific) 262954..264033 Helicobacter pylori 35A 12348890 YP_005769417.1 CDS HMPREF4655_20264 NC_017360.1 264033 264926 D type II restriction endonuclease 264033..264926 Helicobacter pylori 35A 12348891 YP_005769418.1 CDS HMPREF4655_20265 NC_017360.1 265027 265179 D adenine specific DNA methyltransferase 265027..265179 Helicobacter pylori 35A 12348892 YP_005769419.1 CDS ctpA NC_017360.1 265282 266646 D COG: COG0793; Pfam: PF00595, PF03572; InterPro: IPR004447; carboxy-terminal processing protease CtpA 265282..266646 Helicobacter pylori 35A 12348893 YP_005769420.1 CDS HMPREF4655_20267 NC_017360.1 266653 267828 D hypothetical protein 266653..267828 Helicobacter pylori 35A 12348894 YP_005769421.1 CDS plsC NC_017360.1 267815 268531 D COG: COG0204; Pfam: PF01553; InterPro: IPR002123; 1-acylglycerol-3-phosphate O-acyltransferase 267815..268531 Helicobacter pylori 35A 12348895 YP_005769422.1 CDS ung NC_017360.1 268528 269229 D COG: COG0692; Pfam: PF03167; InterPro: IPR005122; uracil-DNA glycosylase 268528..269229 Helicobacter pylori 35A 12348896 YP_005769423.1 CDS gapB NC_017360.1 269318 270310 D COG: COG0057; Pfam: PF00044, PF02800; InterPro: IPR000173; glyceraldehyde-3-phosphate dehydrogenase (NAD(P)(+)) (phosphorylating) 269318..270310 Helicobacter pylori 35A 12348897 YP_005769424.1 CDS pgk NC_017360.1 270326 271534 D COG: COG0126; Pfam: PF00162; InterPro: IPR001576; phosphoglycerate kinase 270326..271534 Helicobacter pylori 35A 12348898 YP_005769425.1 CDS corA NC_017360.1 271550 272512 D COG: COG0598; Pfam: PF01544; InterPro: IPR004488; MIT family metal ion transporter CorA 271550..272512 Helicobacter pylori 35A 12348899 YP_005769426.1 CDS HMPREF4655_20273 NC_017360.1 272519 273247 D COG: COG0861; Pfam: PF03741; InterPro: IPR005496; TerC family integral membrane protein 272519..273247 Helicobacter pylori 35A 12348900 YP_005769427.1 CDS mboIBM NC_017360.1 273561 274259 R COG: COG0863; Pfam: PF01555; InterPro: IPR002941; site-specific DNA-methyltransferase (adenine-specific) complement(273561..274259) Helicobacter pylori 35A 12348901 YP_005769428.1 CDS ddeIM NC_017360.1 274256 275101 R COG: COG0270; Pfam: PF00145; InterPro: IPR001525; DNA (cytosine-5-)-methyltransferase complement(274256..275101) Helicobacter pylori 35A 12348902 YP_005769429.1 CDS putP NC_017360.1 275176 276675 R COG: COG0591; Pfam: PF00474; InterPro: IPR011851; SSS family proline:sodium (Na+) symporter complement(275176..276675) Helicobacter pylori 35A 12348903 YP_005769430.1 CDS HMPREF4655_20277 NC_017360.1 276702 280259 R COG: COG1012; Pfam: PF01619, PF00171; InterPro: IPR015590; proline/pyrroline-5-carboxylate dehydrogenase complement(276702..280259) Helicobacter pylori 35A 12348904 YP_005769431.1 CDS HMPREF4655_20278 NC_017360.1 280577 280786 D hypothetical protein 280577..280786 Helicobacter pylori 35A 12348905 YP_005769432.1 CDS HMPREF4655_20279 NC_017360.1 281346 281537 D hypothetical protein 281346..281537 Helicobacter pylori 35A 12348906 YP_005769433.1 CDS HMPREF4655_20283 NC_017360.1 283125 283685 D hypothetical protein 283125..283685 Helicobacter pylori 35A 12348908 YP_005769434.1 CDS HMPREF4655_20284 NC_017360.1 283710 283970 D hypothetical protein 283710..283970 Helicobacter pylori 35A 12348909 YP_005769435.1 CDS HMPREF4655_20285 NC_017360.1 284052 284252 D hypothetical protein 284052..284252 Helicobacter pylori 35A 12348910 YP_005769436.1 CDS HMPREF4655_20288 NC_017360.1 284724 284987 D hypothetical protein 284724..284987 Helicobacter pylori 35A 12348912 YP_005769437.1 CDS ureD NC_017360.1 287491 288276 R COG: COG0829; Pfam: PF01774; InterPro: IPR002669; urease accessory protein UreD complement(287491..288276) Helicobacter pylori 35A 12348914 YP_005769438.1 CDS ureG NC_017360.1 288276 288875 R COG: COG0378; Pfam: PF02492; InterPro: IPR004400; urease accessory protein UreG complement(288276..288875) Helicobacter pylori 35A 12348915 YP_005769439.1 CDS ureF NC_017360.1 288904 289674 R COG: COG0830; Pfam: PF01730; InterPro: IPR002639; urease accessory protein UreF complement(288904..289674) Helicobacter pylori 35A 12348916 YP_005769440.1 CDS ureE NC_017360.1 289686 290198 R COG: COG2371; Pfam: PF02814, PF05194; InterPro: IPR007864; urease accessory protein UreE complement(289686..290198) Helicobacter pylori 35A 12348917 YP_005769441.1 CDS ureI NC_017360.1 290200 290808 R Pfam: PF02293; InterPro: IPR003211; urease accessory protein / pH-dependent urea-transporter complement(290200..290808) Helicobacter pylori 35A 12348918 YP_005769442.1 CDS HMPREF4655_20298 NC_017360.1 290846 290983 D hypothetical protein 290846..290983 Helicobacter pylori 35A 12348919 YP_005769443.1 CDS ureB NC_017360.1 290980 292689 R COG: COG0804; Pfam: PF00449, PF01979; InterPro: IPR005848; urease subunit beta complement(290980..292689) Helicobacter pylori 35A 12348920 YP_005769444.1 CDS ureA NC_017360.1 292693 293409 R COG: COG0832; Pfam: PF00547, PF00699; InterPro: IPR002019; urease subunit gamma complement(292693..293409) Helicobacter pylori 35A 12348921 YP_005769445.1 CDS lspA NC_017360.1 293782 294255 R COG: COG0597; Pfam: PF01252; InterPro: IPR001872; signal peptidase II complement(293782..294255) Helicobacter pylori 35A 12348923 YP_005769446.1 CDS glmM NC_017360.1 294249 295586 R COG: COG1109; Pfam: PF02878, PF02879, PF02880, PF00408; InterPro: IPR006352; phosphoglucosamine mutase complement(294249..295586) Helicobacter pylori 35A 12348924 YP_005769447.1 CDS rpsT NC_017360.1 295676 295945 D COG: COG0268; Pfam: PF01649; InterPro: IPR002583; 30S ribosomal protein S20 295676..295945 Helicobacter pylori 35A 12348925 YP_005769448.1 CDS prfA NC_017360.1 296062 297120 D COG: COG0216; Pfam: PF03462, PF00472; InterPro: IPR004373; peptide chain release factor RF1 296062..297120 Helicobacter pylori 35A 12348926 YP_005769449.1 CDS HMPREF4655_20305 NC_017360.1 297539 297835 D reminiscent outer membrane protein HorA 297539..297835 Helicobacter pylori 35A 12348927 YP_005769450.1 CDS HMPREF4655_20309 NC_017360.1 299328 301034 D hypothetical protein 299328..301034 Helicobacter pylori 35A 12348929 YP_005769451.1 CDS HMPREF4655_20310 NC_017360.1 301202 301504 D hypothetical protein 301202..301504 Helicobacter pylori 35A 12348930 YP_005769452.1 CDS tlpC NC_017360.1 301475 303496 R COG: COG0840; Pfam: PF00672, PF00015; InterPro: IPR004089; methyl-accepting chemotaxis protein complement(301475..303496) Helicobacter pylori 35A 12348931 YP_005769453.1 CDS rpsI NC_017360.1 303643 304032 R COG: COG0103; Pfam: PF00380; InterPro: IPR000754; 30S ribosomal protein S9 complement(303643..304032) Helicobacter pylori 35A 12348932 YP_005769454.1 CDS rplM NC_017360.1 304029 304454 R COG: COG0102; Pfam: PF00572; InterPro: IPR005823; 50S ribosomal protein L13 complement(304029..304454) Helicobacter pylori 35A 12348933 YP_005769455.1 CDS HMPREF4655_20314 NC_017360.1 304626 304814 R hypothetical protein complement(304626..304814) Helicobacter pylori 35A 12348934 YP_005769456.1 CDS mdh NC_017360.1 304821 306173 R COG: COG0579; Pfam: PF01266; malate dehydrogenase (acceptor) complement(304821..306173) Helicobacter pylori 35A 12348935 YP_005769457.1 CDS HMPREF4655_20316 NC_017360.1 306227 307603 R COG: COG0791; Pfam: PF00877; InterPro: IPR000064; hypothetical protein complement(306227..307603) Helicobacter pylori 35A 12348936 YP_005769458.1 CDS rpoD NC_017360.1 307624 309666 R COG: COG0568; Pfam: PF00140, PF04542, PF04539, PF04545; InterPro: IPR012760; DNA-directed RNA polymerase sigma subunit RpoD complement(307624..309666) Helicobacter pylori 35A 12348937 YP_005769459.1 CDS HMPREF4655_20318 NC_017360.1 309914 310498 D PZ1b protein 309914..310498 Helicobacter pylori 35A 12348938 YP_005769460.1 CDS HMPREF4655_20319 NC_017360.1 310646 310939 D PZ2b protein 310646..310939 Helicobacter pylori 35A 12348939 YP_005769461.1 CDS HMPREF4655_20322 NC_017360.1 312466 312696 D hypothetical protein 312466..312696 Helicobacter pylori 35A 12348941 YP_005769462.1 CDS HMPREF4655_20323 NC_017360.1 312907 313035 D hypothetical protein 312907..313035 Helicobacter pylori 35A 12348942 YP_005769463.1 CDS virB4-2 NC_017360.1 313028 313267 D COG: COG3451; DNA transfer protein 313028..313267 Helicobacter pylori 35A 12348943 YP_005769464.1 CDS topA NC_017360.1 315457 317088 D COG: COG0550; Pfam: PF01751, PF01131; InterPro: IPR000380; DNA topoisomerase TopA 315457..317088 Helicobacter pylori 35A 12348945 YP_005769465.1 CDS HMPREF4655_20328 NC_017360.1 317048 317245 R Pfam: PF06518; InterPro: IPR009488; hypothetical protein complement(317048..317245) Helicobacter pylori 35A 12348946 YP_005769466.1 CDS HMPREF4655_20329 NC_017360.1 317409 317534 R hypothetical protein complement(317409..317534) Helicobacter pylori 35A 12348947 YP_005769467.1 CDS HMPREF4655_20330 NC_017360.1 317586 318446 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(317586..318446) Helicobacter pylori 35A 12348948 YP_005769468.1 CDS rplT NC_017360.1 318646 318996 R COG: COG0292; Pfam: PF00453; InterPro: IPR005813; 50S ribosomal protein L20 complement(318646..318996) Helicobacter pylori 35A 12348949 YP_005769469.1 CDS rpmI NC_017360.1 319091 319285 R COG: COG0291; Pfam: PF01632; InterPro: IPR001706; 50S ribosomal protein L35 complement(319091..319285) Helicobacter pylori 35A 12348950 YP_005769470.1 CDS infC NC_017360.1 319266 319877 R COG: COG0290; Pfam: PF05198, PF00707; InterPro: IPR001288; translation initiation factor IF3 complement(319266..319877) Helicobacter pylori 35A 12348951 YP_005769471.1 CDS thrS NC_017360.1 319874 321712 R COG: COG0441; Pfam: PF07973, PF00587, PF03129; InterPro: IPR002320; threonine--tRNA ligase complement(319874..321712) Helicobacter pylori 35A 12348952 YP_005769472.1 CDS ppsA NC_017360.1 322073 324511 D COG: COG0574; Pfam: PF01326, PF00391, PF02896; InterPro: IPR006319; pyruvate, water dikinase 322073..324511 Helicobacter pylori 35A 12348953 YP_005769473.1 CDS HMPREF4655_20336 NC_017360.1 324609 325847 D Pfam: PF05917; InterPro: IPR008592; hypothetical protein 324609..325847 Helicobacter pylori 35A 12348954 YP_005769474.1 CDS HMPREF4655_20337 NC_017360.1 326102 327181 D Pfam: PF05917; InterPro: IPR008592; hypothetical protein 326102..327181 Helicobacter pylori 35A 12348955 YP_005769475.1 CDS HMPREF4655_20338 NC_017360.1 327278 328207 R COG: COG0731; Pfam: PF04055; radical SAM domain-containing protein complement(327278..328207) Helicobacter pylori 35A 12348956 YP_005769476.1 CDS topA2 NC_017360.1 328197 330407 R COG: COG0550; Pfam: PF01751, PF01131, PF01396; InterPro: IPR005733; DNA topoisomerase TopA complement(328197..330407) Helicobacter pylori 35A 12348957 YP_005769477.1 CDS HMPREF4655_20340 NC_017360.1 330573 332117 D COG: COG1344; Pfam: PF00669, PF07196, PF00700; InterPro: IPR001492; flagellin B 330573..332117 Helicobacter pylori 35A 12348958 YP_005769478.1 CDS maf NC_017360.1 332177 334063 D COG: COG2604; Pfam: PF01973; InterPro: IPR002826; motility accessory factor 332177..334063 Helicobacter pylori 35A 12348959 YP_005769479.1 CDS HMPREF4655_20342 NC_017360.1 334090 334386 R hypothetical protein complement(334090..334386) Helicobacter pylori 35A 12348960 YP_005769480.1 CDS HMPREF4655_20343 NC_017360.1 334407 335036 R COG: COG0235; Pfam: PF00596; InterPro: IPR001303; L-fuculose phosphate aldolase complement(334407..335036) Helicobacter pylori 35A 12348961 YP_005769481.1 CDS HMPREF4655_20344 NC_017360.1 335265 336095 D COG: COG1420; InterPro: IPR011991; heat-inducible transcription repressor HrcA 335265..336095 Helicobacter pylori 35A 12348962 YP_005769482.1 CDS grpE NC_017360.1 336095 336670 D COG: COG0576; Pfam: PF01025; InterPro: IPR000740; co-chaperone GrpE 336095..336670 Helicobacter pylori 35A 12348963 YP_005769483.1 CDS dnaK NC_017360.1 336701 338563 D COG: COG0443; Pfam: PF00012; InterPro: IPR012725; chaperone DnaK 336701..338563 Helicobacter pylori 35A 12348964 YP_005769484.1 CDS srpG NC_017360.1 338821 339738 D COG: COG0031; Pfam: PF00291; InterPro: IPR001926; cysteine synthase 338821..339738 Helicobacter pylori 35A 12348965 YP_005769485.1 CDS metB NC_017360.1 339759 340901 D COG: COG0626; Pfam: PF01053; InterPro: IPR000277; cystathionine gamma-synthase 339759..340901 Helicobacter pylori 35A 12348966 YP_005769486.1 CDS luxS NC_017360.1 340936 341403 D COG: COG1854; Pfam: PF02664; InterPro: IPR003815; S-ribosylhomocysteine lyase 340936..341403 Helicobacter pylori 35A 12348967 YP_005769487.1 CDS cpdB NC_017360.1 341535 343280 D COG: COG0737; Pfam: PF00149, PF02872; InterPro: IPR006179; phosphatase/nucleotidase 341535..343280 Helicobacter pylori 35A 12348968 YP_005769488.1 CDS tlpB NC_017360.1 343486 345183 D Pfam: PF00672, PF00015; InterPro: IPR004089; methyl-accepting chemotaxis protein 343486..345183 Helicobacter pylori 35A 12348969 YP_005769489.1 CDS wbyL NC_017360.1 345214 345996 D COG: COG0463; Pfam: PF00535; InterPro: IPR001173; glycosyl transferase family protein 345214..345996 Helicobacter pylori 35A 12348970 YP_005769490.1 CDS HMPREF4655_20353 NC_017360.1 345979 346740 R Pfam: PF01856; outer membrane protein complement(345979..346740) Helicobacter pylori 35A 12348971 YP_005769491.1 CDS HMPREF4655_20354 NC_017360.1 346873 347979 R COG: COG1636; Pfam: PF02677; InterPro: IPR003828; hypothetical protein complement(346873..347979) Helicobacter pylori 35A 12348972 YP_005769492.1 CDS tlpA NC_017360.1 347979 350006 R COG: COG0840; Pfam: PF00015; InterPro: IPR004089; methyl-accepting chemotaxis protein complement(347979..350006) Helicobacter pylori 35A 12348973 YP_005769493.1 CDS thrC NC_017360.1 350209 351669 D COG: COG0498; Pfam: PF00291; InterPro: IPR004450; threonine synthase 350209..351669 Helicobacter pylori 35A 12348974 YP_005769494.1 CDS HMPREF4655_20357 NC_017360.1 351775 352485 D hypothetical protein 351775..352485 Helicobacter pylori 35A 12348975 YP_005769495.1 CDS HMPREF4655_20358 NC_017360.1 352724 352849 D hypothetical protein 352724..352849 Helicobacter pylori 35A 12348976 YP_005769496.1 CDS hprA NC_017360.1 352840 353784 R COG: COG1052; Pfam: PF00389, PF02826; InterPro: IPR015508; glycerate dehydrogenase complement(352840..353784) Helicobacter pylori 35A 12348977 YP_005769497.1 CDS HMPREF4655_20360 NC_017360.1 353857 354387 D hypothetical protein 353857..354387 Helicobacter pylori 35A 12348978 YP_005769498.1 CDS HMPREF4655_20361 NC_017360.1 354486 355328 D Pfam: PF01531; InterPro: IPR002516; alpha-1,2-fucosyltransferase 354486..355328 Helicobacter pylori 35A 12348979 YP_005769499.1 CDS mboIBM2 NC_017360.1 355396 356226 R COG: COG0863; Pfam: PF01555; InterPro: IPR002941; site-specific DNA-methyltransferase (adenine-specific) complement(355396..356226) Helicobacter pylori 35A 12348980 YP_005769500.1 CDS mboIR NC_017360.1 356567 357109 R Pfam: PF04556; InterPro: IPR007637; type II site-specific deoxyribonuclease complement(356567..357109) Helicobacter pylori 35A 12348981 YP_005769501.1 CDS fabD NC_017360.1 357534 358463 D COG: COG0331; Pfam: PF00698; InterPro: IPR001227; malonyl-CoA-[acyl-carrier-protein] transacylase 357534..358463 Helicobacter pylori 35A 12348983 YP_005769502.1 CDS mtnN NC_017360.1 358456 359169 D COG: COG0775; Pfam: PF01048; InterPro: IPR000845; adenosylhomocysteine nucleosidase 358456..359169 Helicobacter pylori 35A 12348984 YP_005769503.1 CDS HMPREF4655_20370 NC_017360.1 361579 361869 R hypothetical protein complement(361579..361869) Helicobacter pylori 35A 12348987 YP_005769504.1 CDS HMPREF4655_20371 NC_017360.1 361890 362189 D Pfam: PF06518; InterPro: IPR009488; hypothetical protein 361890..362189 Helicobacter pylori 35A 12348988 YP_005769505.1 CDS HMPREF4655_20372 NC_017360.1 362475 363344 D hypothetical protein 362475..363344 Helicobacter pylori 35A 12348989 YP_005769506.1 CDS HMPREF4655_20373 NC_017360.1 363740 363928 R hypothetical protein complement(363740..363928) Helicobacter pylori 35A 12348990 YP_005769507.1 CDS HMPREF4655_20374 NC_017360.1 363906 364160 D hypothetical protein 363906..364160 Helicobacter pylori 35A 12348991 YP_005769508.1 CDS sdaA NC_017360.1 364210 365577 R COG: COG1760; Pfam: PF03315, PF03313; InterPro: IPR004644; L-serine ammonia-lyase complement(364210..365577) Helicobacter pylori 35A 12348992 YP_005769509.1 CDS sdaC NC_017360.1 365577 366818 R COG: COG0814; Pfam: PF01490; InterPro: IPR004694; HAAAP family serine/threonine permease complement(365577..366818) Helicobacter pylori 35A 12348993 YP_005769510.1 CDS aroF NC_017360.1 366990 368348 D COG: COG3200; Pfam: PF01474; InterPro: IPR002480; phospho-2-dehydro-3-deoxyheptonate aldolase 366990..368348 Helicobacter pylori 35A 12348994 YP_005769511.1 CDS HMPREF4655_20378 NC_017360.1 368427 368561 D hypothetical protein 368427..368561 Helicobacter pylori 35A 12348995 YP_005769512.1 CDS bcp NC_017360.1 368789 369247 R COG: COG1225; Pfam: PF00578; InterPro: IPR012335; peroxiredoxin complement(368789..369247) Helicobacter pylori 35A 12348996 YP_005769513.1 CDS HMPREF4655_20380 NC_017360.1 369257 369892 R COG: COG1556; Pfam: PF02589; InterPro: IPR003741; hypothetical protein complement(369257..369892) Helicobacter pylori 35A 12348997 YP_005769514.1 CDS HMPREF4655_20381 NC_017360.1 369885 371330 R COG: COG1139; Pfam: PF02589, PF00037; InterPro: IPR004452; iron-sulfur cluster-binding protein complement(369885..371330) Helicobacter pylori 35A 12348998 YP_005769515.1 CDS HMPREF4655_20382 NC_017360.1 371359 372123 R COG: COG0247; Pfam: PF02754; InterPro: IPR004017; hypothetical protein complement(371359..372123) Helicobacter pylori 35A 12348999 YP_005769516.1 CDS lctP NC_017360.1 372313 373959 D COG: COG1620; Pfam: PF02652; InterPro: IPR003804; L-lactate permease 372313..373959 Helicobacter pylori 35A 12349000 YP_005769517.1 CDS lctP2 NC_017360.1 374020 375675 D COG: COG1620; Pfam: PF02652; InterPro: IPR003804; L-lactate permease 374020..375675 Helicobacter pylori 35A 12349001 YP_005769518.1 CDS mutY NC_017360.1 375699 376568 R COG: COG1194; Pfam: PF00730, PF00633; InterPro: IPR003265; A/G-specific adenine glycosylase complement(375699..376568) Helicobacter pylori 35A 12349002 YP_005769519.1 CDS citT NC_017360.1 376686 378134 R COG: COG0471; Pfam: PF00939; InterPro: IPR001898; DASS family divalent anion:sodium (Na+) symporter complement(376686..378134) Helicobacter pylori 35A 12349003 YP_005769520.1 CDS fixN NC_017360.1 378304 379770 D COG: COG3278; Pfam: PF00115; InterPro: IPR004677; cytochrome-c oxidase 378304..379770 Helicobacter pylori 35A 12349004 YP_005769521.1 CDS ccoO NC_017360.1 379783 380481 D COG: COG2993; Pfam: PF02433; InterPro: IPR003468; cb-type cytochrome c oxidase subunit II 379783..380481 Helicobacter pylori 35A 12349005 YP_005769522.1 CDS HMPREF4655_20389 NC_017360.1 380489 380710 D COG: COG4736; InterPro: IPR014107; cb-type cytochrome c oxidase subunit IV 380489..380710 Helicobacter pylori 35A 12349006 YP_005769523.1 CDS ccoP NC_017360.1 380712 381590 D COG: COG2010; Pfam: PF00034; InterPro: IPR004678; cb-type cytochrome c oxidase subunit III 380712..381590 Helicobacter pylori 35A 12349007 YP_005769524.1 CDS HMPREF4655_20391 NC_017360.1 381601 381807 D hypothetical protein 381601..381807 Helicobacter pylori 35A 12349008 YP_005769525.1 CDS HMPREF4655_20392 NC_017360.1 381908 382492 D hypothetical protein 381908..382492 Helicobacter pylori 35A 12349009 YP_005769526.1 CDS HMPREF4655_20393 NC_017360.1 382504 383085 D hypothetical protein 382504..383085 Helicobacter pylori 35A 12349010 YP_005769527.1 CDS HMPREF4655_20394 NC_017360.1 383173 383940 D hypothetical protein 383173..383940 Helicobacter pylori 35A 12349011 YP_005769528.1 CDS HMPREF4655_20395 NC_017360.1 383937 384878 R COG: COG2107; Pfam: PF02642; InterPro: IPR003794; hypothetical protein complement(383937..384878) Helicobacter pylori 35A 12349012 YP_005769529.1 CDS recA NC_017360.1 384902 385945 D COG: COG0468; Pfam: PF00154; InterPro: IPR013765; recombination protein A 384902..385945 Helicobacter pylori 35A 12349013 YP_005769530.1 CDS eno NC_017360.1 385957 387237 D COG: COG0148; Pfam: PF03952, PF00113; InterPro: IPR000941; enolase 385957..387237 Helicobacter pylori 35A 12349014 YP_005769531.1 CDS HMPREF4655_20398 NC_017360.1 387230 387505 D hypothetical protein 387230..387505 Helicobacter pylori 35A 12349015 YP_005769532.1 CDS HMPREF4655_20399 NC_017360.1 387515 388117 D hypothetical protein 387515..388117 Helicobacter pylori 35A 12349016 YP_005769533.1 CDS aroK NC_017360.1 388122 388610 D COG: COG0703; Pfam: PF01202; InterPro: IPR000623; shikimate kinase 388122..388610 Helicobacter pylori 35A 12349017 YP_005769534.1 CDS HMPREF4655_20401 NC_017360.1 388632 389588 D Pfam: PF02743; general glycosylation pathway protein 388632..389588 Helicobacter pylori 35A 12349018 YP_005769535.1 CDS rfaJ2 NC_017360.1 389585 390703 R COG: COG1442; Pfam: PF01501; InterPro: IPR002495; lipopolysaccharide 1,2-glucosyltransferase complement(389585..390703) Helicobacter pylori 35A 12349019 YP_005769536.1 CDS hcpD NC_017360.1 390857 391774 D COG: COG0790; Pfam: PF08238; InterPro: IPR011990; beta-lactamase 390857..391774 Helicobacter pylori 35A 12349020 YP_005769537.1 CDS HMPREF4655_20404 NC_017360.1 392540 393262 R COG: COG0217; Pfam: PF01709; InterPro: IPR002876; hypothetical protein complement(392540..393262) Helicobacter pylori 35A 12349021 YP_005769538.1 CDS hemB NC_017360.1 393263 394234 R COG: COG0113; Pfam: PF00490; InterPro: IPR013785; porphobilinogen synthase complement(393263..394234) Helicobacter pylori 35A 12349022 YP_005769539.1 CDS HMPREF4655_20406 NC_017360.1 394257 395588 R COG: COG0642; Pfam: PF00672, PF00512, PF02518; InterPro: IPR003660; sensor histidine kinase complement(394257..395588) Helicobacter pylori 35A 12349023 YP_005769540.1 CDS racR NC_017360.1 395614 396291 R COG: COG0745; Pfam: PF00072, PF00486; InterPro: IPR001789; DNA-binding response regulator complement(395614..396291) Helicobacter pylori 35A 12349024 YP_005769541.1 CDS HMPREF4655_20408 NC_017360.1 396525 397004 R hypothetical protein complement(396525..397004) Helicobacter pylori 35A 12349025 YP_005769542.1 CDS HMPREF4655_20409 NC_017360.1 396995 397258 R hypothetical protein complement(396995..397258) Helicobacter pylori 35A 12349026 YP_005769543.1 CDS HMPREF4655_20410 NC_017360.1 397292 398572 R COG: COG0826; Pfam: PF01136; InterPro: IPR001539; U32 family peptidase complement(397292..398572) Helicobacter pylori 35A 12349027 YP_005769544.1 CDS HMPREF4655_20411 NC_017360.1 398575 399294 R hypothetical protein complement(398575..399294) Helicobacter pylori 35A 12349028 YP_005769545.1 CDS prfB NC_017360.1 399365 400522 R COG: COG1186; Pfam: PF03462, PF00472; InterPro: IPR004374; peptide chain release factor RF2 complement(399365..400522) Helicobacter pylori 35A 12349029 YP_005769546.1 CDS fliR NC_017360.1 400955 401722 R COG: COG1684; Pfam: PF01311; InterPro: IPR002010; flagellar biosynthetic protein FliR complement(400955..401722) Helicobacter pylori 35A 12349031 YP_005769547.1 CDS HMPREF4655_20416 NC_017360.1 401716 402468 R Pfam: PF04401; InterPro: IPR007496; hypothetical protein complement(401716..402468) Helicobacter pylori 35A 12349032 YP_005769548.1 CDS HMPREF4655_20417 NC_017360.1 402924 403823 D COG: COG0760; Pfam: PF00639; InterPro: IPR000297; peptidyl-prolyl cis-trans isomerase 402924..403823 Helicobacter pylori 35A 12349033 YP_005769549.1 CDS fbaB NC_017360.1 403840 404763 D COG: COG0191; Pfam: PF01116; InterPro: IPR000771; fructose-bisphosphate aldolase 403840..404763 Helicobacter pylori 35A 12349034 YP_005769550.1 CDS efp NC_017360.1 404785 405348 D COG: COG0231; Pfam: PF08207, PF01132, PF09285; InterPro: IPR011768; elongation factor P 404785..405348 Helicobacter pylori 35A 12349035 YP_005769551.1 CDS pseI NC_017360.1 405888 406922 R COG: COG2089; Pfam: PF03102, PF08666; InterPro: IPR013785; pseudaminic acid synthase complement(405888..406922) Helicobacter pylori 35A 12349036 YP_005769552.1 CDS HMPREF4655_20421 NC_017360.1 406926 407567 R COG: COG1136; Pfam: PF00005; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC protein complement(406926..407567) Helicobacter pylori 35A 12349037 YP_005769553.1 CDS lnt NC_017360.1 407567 408841 R COG: COG0815; Pfam: PF00795; InterPro: IPR004563; apolipoprotein N-acyltransferase complement(407567..408841) Helicobacter pylori 35A 12349038 YP_005769554.1 CDS HMPREF4655_20423 NC_017360.1 409066 409773 D COG: COG1286; Pfam: PF02674; InterPro: IPR003825; hypothetical protein 409066..409773 Helicobacter pylori 35A 12349039 YP_005769555.1 CDS lysS NC_017360.1 409783 411288 D COG: COG1190; Pfam: PF01336, PF00152; InterPro: IPR002313; lysine--tRNA ligase 409783..411288 Helicobacter pylori 35A 12349040 YP_005769556.1 CDS glyA NC_017360.1 411288 412538 D COG: COG0112; Pfam: PF00464; InterPro: IPR001085; glycine hydroxymethyltransferase 411288..412538 Helicobacter pylori 35A 12349041 YP_005769557.1 CDS HMPREF4655_20426 NC_017360.1 412549 413091 D Pfam: PF08966, PF01896; InterPro: IPR015061; DNA primase small subunit domain protein 412549..413091 Helicobacter pylori 35A 12349042 YP_005769558.1 CDS HMPREF4655_20427 NC_017360.1 413113 413922 D hypothetical protein 413113..413922 Helicobacter pylori 35A 12349043 YP_005769559.1 CDS HMPREF4655_20428 NC_017360.1 414281 415822 R COG: COG1479; Pfam: PF03235, PF07510; InterPro: IPR011089; hypothetical protein complement(414281..415822) Helicobacter pylori 35A 12349044 YP_005769560.1 CDS HMPREF4655_20429 NC_017360.1 416126 416659 D COG: COG2862; Pfam: PF03350; InterPro: IPR005134; membrane protein 416126..416659 Helicobacter pylori 35A 12349045 YP_005769561.1 CDS HMPREF4655_20430 NC_017360.1 416665 418173 R COG: COG1502; Pfam: PF00614; phospholipase D complement(416665..418173) Helicobacter pylori 35A 12349046 YP_005769562.1 CDS frdB NC_017360.1 418195 418932 R COG: COG0479; Pfam: PF00111, PF00037; InterPro: IPR004489; succinate dehydrogenase complement(418195..418932) Helicobacter pylori 35A 12349047 YP_005769563.1 CDS frdA NC_017360.1 418925 421069 R COG: COG1053; Pfam: PF00890, PF02910; InterPro: IPR014006; succinate dehydrogenase complement(418925..421069) Helicobacter pylori 35A 12349048 YP_005769564.1 CDS frdC NC_017360.1 421079 421894 R COG: COG2009; Pfam: PF02967; InterPro: IPR004224; fumarate reductase respiratory complex complement(421079..421894) Helicobacter pylori 35A 12349049 YP_005769565.1 CDS tpiA NC_017360.1 422059 422763 D COG: COG0149; Pfam: PF00121; InterPro: IPR013785; triose-phosphate isomerase 422059..422763 Helicobacter pylori 35A 12349050 YP_005769566.1 CDS fabI NC_017360.1 422773 423600 D COG: COG0623; InterPro: IPR014358; enoyl-ACP reductase 422773..423600 Helicobacter pylori 35A 12349051 YP_005769567.1 CDS lpxD NC_017360.1 423610 424620 D COG: COG1044; Pfam: PF04613, PF00132; InterPro: IPR007691; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 423610..424620 Helicobacter pylori 35A 12349052 YP_005769568.1 CDS metK NC_017360.1 424685 425842 D COG: COG0192; Pfam: PF00438, PF02772, PF02773; InterPro: IPR002133; methionine adenosyltransferase 424685..425842 Helicobacter pylori 35A 12349053 YP_005769569.1 CDS ndk NC_017360.1 425909 426322 D COG: COG0105; Pfam: PF00334; InterPro: IPR001564; nucleoside-diphosphate kinase 425909..426322 Helicobacter pylori 35A 12349054 YP_005769570.1 CDS HMPREF4655_20439 NC_017360.1 426349 426705 D hypothetical protein 426349..426705 Helicobacter pylori 35A 12349055 YP_005769571.1 CDS rpmF NC_017360.1 426721 426867 D COG: COG0333; Pfam: PF01783; InterPro: IPR002677; 50S ribosomal protein L32 426721..426867 Helicobacter pylori 35A 12349056 YP_005769572.1 CDS plsX NC_017360.1 426945 427964 D COG: COG0416; Pfam: PF02504; InterPro: IPR003664; fatty acid/phospholipid synthesis protein PlsX 426945..427964 Helicobacter pylori 35A 12349057 YP_005769573.1 CDS fabH NC_017360.1 427989 428981 D COG: COG0332; Pfam: PF08545, PF08541; InterPro: IPR004655; beta-ketoacyl-acyl-carrier-protein synthase III 427989..428981 Helicobacter pylori 35A 12349058 YP_005769574.1 CDS HMPREF4655_20443 NC_017360.1 429002 429304 D hypothetical protein 429002..429304 Helicobacter pylori 35A 12349059 YP_005769575.1 CDS HMPREF4655_20444 NC_017360.1 429594 429977 R hypothetical protein complement(429594..429977) Helicobacter pylori 35A 12349060 YP_005769576.1 CDS mrp NC_017360.1 432926 434032 D COG: COG0489; Pfam: PF01883; InterPro: IPR002744; ATP/GTP-binding protein 432926..434032 Helicobacter pylori 35A 12349062 YP_005769577.1 CDS rfaJ3 NC_017360.1 434046 435065 R COG: COG1442; Pfam: PF01501; InterPro: IPR002495; lipopolysaccharide biosynthesis protein complement(434046..435065) Helicobacter pylori 35A 12349063 YP_005769578.1 CDS rfaJ4 NC_017360.1 435089 435202 R Pfam: PF01501; lipopolysaccharide biosynthesis protein complement(435089..435202) Helicobacter pylori 35A 12349064 YP_005769579.1 CDS HMPREF4655_20450 NC_017360.1 435313 436716 D Pfam: PF02521; InterPro: IPR003678; outer membrane protein HofA 435313..436716 Helicobacter pylori 35A 12349065 YP_005769580.1 CDS htpG NC_017360.1 436820 438685 D COG: COG0326; Pfam: PF02518, PF00183; InterPro: IPR001404; chaperone HtpG 436820..438685 Helicobacter pylori 35A 12349066 YP_005769581.1 CDS hcpA NC_017360.1 438873 439625 R COG: COG0790; Pfam: PF08238; InterPro: IPR011990; beta-lactamase complement(438873..439625) Helicobacter pylori 35A 12349067 YP_005769582.1 CDS dapE NC_017360.1 440079 441296 R COG: COG0624; Pfam: PF01546, PF07687; InterPro: IPR005941; succinyl-diaminopimelate desuccinylase complement(440079..441296) Helicobacter pylori 35A 12349068 YP_005769583.1 CDS gidA NC_017360.1 441256 443121 R COG: COG0445; Pfam: PF01134; InterPro: IPR004416; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(441256..443121) Helicobacter pylori 35A 12349069 YP_005769584.1 CDS hunaDC NC_017360.1 443217 444875 D COG: COG0471; Pfam: PF00939; InterPro: IPR001898; sodium-dependent transporter 443217..444875 Helicobacter pylori 35A 12349070 YP_005769585.1 CDS cdsA NC_017360.1 444888 445688 D COG: COG0575; Pfam: PF01148; InterPro: IPR000374; phosphatidate cytidylyltransferase 444888..445688 Helicobacter pylori 35A 12349071 YP_005769586.1 CDS dxr NC_017360.1 445689 446795 D COG: COG0743; Pfam: PF02670, PF08436; InterPro: IPR003821; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 445689..446795 Helicobacter pylori 35A 12349072 YP_005769587.1 CDS HMPREF4655_20460 NC_017360.1 448003 448617 R COG: COG1881; Pfam: PF01161; InterPro: IPR008914; phospholipid-binding protein complement(448003..448617) Helicobacter pylori 35A 12349074 YP_005769588.1 CDS HMPREF4655_20461 NC_017360.1 448699 449160 D hypothetical protein 448699..449160 Helicobacter pylori 35A 12349075 YP_005769589.1 CDS iscS NC_017360.1 449332 450495 D COG: COG1104; Pfam: PF00266; InterPro: IPR000192; cysteine desulfurase 449332..450495 Helicobacter pylori 35A 12349076 YP_005769590.1 CDS HMPREF4655_20463 NC_017360.1 450517 451497 D Pfam: PF01592, PF04324, PF01106; InterPro: IPR002871; NifU family protein 450517..451497 Helicobacter pylori 35A 12349077 YP_005769591.1 CDS HMPREF4655_20464 NC_017360.1 451649 451822 D hypothetical protein 451649..451822 Helicobacter pylori 35A 12349078 YP_005769592.1 CDS HMPREF4655_20465 NC_017360.1 451969 453339 D COG: COG1066; InterPro: IPR004504; DNA repair protein RadA 451969..453339 Helicobacter pylori 35A 12349079 YP_005769593.1 CDS msrAB NC_017360.1 453463 454542 D COG: COG0225; Pfam: PF01625, PF01641; InterPro: IPR002569; peptide-methionine (R)-S-oxide reductase 453463..454542 Helicobacter pylori 35A 12349080 YP_005769594.1 CDS hflK NC_017360.1 454674 454877 D FtsH protease regulator HflK 454674..454877 Helicobacter pylori 35A 12349081 YP_005769595.1 CDS HMPREF4655_20468 NC_017360.1 455142 455975 R COG: COG0730; Pfam: PF01925; InterPro: IPR002781; integral membrane protein complement(455142..455975) Helicobacter pylori 35A 12349082 YP_005769596.1 CDS HMPREF4655_20469 NC_017360.1 456148 458319 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(456148..458319) Helicobacter pylori 35A 12349083 YP_005769597.1 CDS HMPREF4655_20470 NC_017360.1 458473 459645 D COG: COG0659; Pfam: PF00916; InterPro: IPR011547; sulfate permease 458473..459645 Helicobacter pylori 35A 12349084 YP_005769598.1 CDS HMPREF4655_20471 NC_017360.1 459878 461422 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(459878..461422) Helicobacter pylori 35A 12349086 YP_005769599.1 CDS kdsB NC_017360.1 461617 462342 R COG: COG1212; Pfam: PF02348; InterPro: IPR004528; 3-deoxy-manno-octulosonate cytidylyltransferase complement(461617..462342) Helicobacter pylori 35A 12349087 YP_005769600.1 CDS HMPREF4655_20473 NC_017360.1 462456 463253 D COG: COG1651; disulfide isomerase 462456..463253 Helicobacter pylori 35A 12349088 YP_005769601.1 CDS HMPREF4655_20474 NC_017360.1 463269 463919 D motility protein 463269..463919 Helicobacter pylori 35A 12349089 YP_005769602.1 CDS HMPREF4655_20475 NC_017360.1 463943 465115 D COG: COG0754; Pfam: PF03738; InterPro: IPR005494; glutathionylspermidine synthase 463943..465115 Helicobacter pylori 35A 12349090 YP_005769603.1 CDS HMPREF4655_20476 NC_017360.1 465115 465645 D hypothetical protein 465115..465645 Helicobacter pylori 35A 12349091 YP_005769604.1 CDS HMPREF4655_20477 NC_017360.1 465620 465811 D hypothetical protein 465620..465811 Helicobacter pylori 35A 12349092 YP_005769605.1 CDS HMPREF4655_20478 NC_017360.1 465829 465987 D hypothetical protein 465829..465987 Helicobacter pylori 35A 12349093 YP_005769606.1 CDS hcpE NC_017360.1 466096 467160 R COG: COG0790; Pfam: PF08238; InterPro: IPR011990; beta-lactamase complement(466096..467160) Helicobacter pylori 35A 12349094 YP_005769607.1 CDS HMPREF4655_20480 NC_017360.1 467256 467627 R hypothetical protein complement(467256..467627) Helicobacter pylori 35A 12349095 YP_005769608.1 CDS hemC NC_017360.1 467627 468547 R COG: COG0181; Pfam: PF01379, PF03900; InterPro: IPR000860; hydroxymethylbilane synthase complement(467627..468547) Helicobacter pylori 35A 12349096 YP_005769609.1 CDS proS NC_017360.1 468558 470291 R COG: COG0442; Pfam: PF00587, PF04073, PF03129; InterPro: IPR004500; proline--tRNA ligase complement(468558..470291) Helicobacter pylori 35A 12349097 YP_005769610.1 CDS hemA NC_017360.1 470295 471644 R COG: COG0373; Pfam: PF05201, PF01488, PF00745; InterPro: IPR000343; glutamyl-tRNA reductase complement(470295..471644) Helicobacter pylori 35A 12349098 YP_005769611.1 CDS ispB NC_017360.1 471644 472567 R COG: COG0142; Pfam: PF00348; InterPro: IPR008949; polyprenyl synthetase complement(471644..472567) Helicobacter pylori 35A 12349099 YP_005769612.1 CDS HMPREF4655_20485 NC_017360.1 472577 472972 R hypothetical protein complement(472577..472972) Helicobacter pylori 35A 12349100 YP_005769613.1 CDS HMPREF4655_20486 NC_017360.1 472965 473249 R hypothetical protein complement(472965..473249) Helicobacter pylori 35A 12349101 YP_005769614.1 CDS dps NC_017360.1 473270 473704 R COG: COG0783; Pfam: PF00210; InterPro: IPR012347; DNA starvation/stationary phase protection protein DpsA complement(473270..473704) Helicobacter pylori 35A 12349102 YP_005769615.1 CDS atoS NC_017360.1 473910 475055 R COG: COG0642; Pfam: PF00512, PF02518; InterPro: IPR003594; sensor histidine kinase complement(473910..475055) Helicobacter pylori 35A 12349103 YP_005769616.1 CDS HMPREF4655_20489 NC_017360.1 475052 475369 R hypothetical protein complement(475052..475369) Helicobacter pylori 35A 12349104 YP_005769617.1 CDS flgI NC_017360.1 475366 476394 R COG: COG1706; Pfam: PF02119; InterPro: IPR001782; flagellar P-ring protein FlgI complement(475366..476394) Helicobacter pylori 35A 12349105 YP_005769618.1 CDS deaD NC_017360.1 476583 478061 D COG: COG0513; Pfam: PF00270, PF00271; InterPro: IPR014001; ATP-dependent RNA helicase DeaD 476583..478061 Helicobacter pylori 35A 12349106 YP_005769619.1 CDS HMPREF4655_20492 NC_017360.1 478082 479170 D COG: COG0330; Pfam: PF01145; InterPro: IPR001107; hypothetical protein 478082..479170 Helicobacter pylori 35A 12349107 YP_005769620.1 CDS HMPREF4655_20493 NC_017360.1 479177 479716 D hypothetical protein 479177..479716 Helicobacter pylori 35A 12349108 YP_005769621.1 CDS oppD NC_017360.1 479791 481341 R Pfam: PF00005, PF08352; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC protein complement(479791..481341) Helicobacter pylori 35A 12349109 YP_005769622.1 CDS HMPREF4655_20497 NC_017360.1 482715 484160 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 482715..484160 Helicobacter pylori 35A 12349112 YP_005769623.1 CDS HMPREF4655_20498 NC_017360.1 484173 485591 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 484173..485591 Helicobacter pylori 35A 12349113 YP_005769624.1 CDS purA NC_017360.1 485690 486925 D COG: COG0104; Pfam: PF00709; InterPro: IPR001114; adenylosuccinate synthase 485690..486925 Helicobacter pylori 35A 12349114 YP_005769625.1 CDS HMPREF4655_20500 NC_017360.1 486922 487350 D hypothetical protein 486922..487350 Helicobacter pylori 35A 12349115 YP_005769626.1 CDS pdp NC_017360.1 487343 488002 D Pdp protein 487343..488002 Helicobacter pylori 35A 12349116 YP_005769627.1 CDS rseP NC_017360.1 487999 489048 D COG: COG0750; Pfam: PF02163; InterPro: IPR004387; RIP metalloprotease RseP 487999..489048 Helicobacter pylori 35A 12349117 YP_005769628.1 CDS xseA NC_017360.1 489061 490323 D COG: COG1570; Pfam: PF01336, PF02601; InterPro: IPR003753; exodeoxyribonuclease VII large subunit 489061..490323 Helicobacter pylori 35A 12349118 YP_005769629.1 CDS mjaVIP NC_017360.1 490519 490707 D endonuclease MjaVIP 490519..490707 Helicobacter pylori 35A 12349119 YP_005769630.1 CDS hpaim NC_017360.1 490722 491990 D COG: COG0863; Pfam: PF01555; InterPro: IPR002941; adenine specific DNA methyltransferase 490722..491990 Helicobacter pylori 35A 12349120 YP_005769631.1 CDS clpB NC_017360.1 492062 494632 D COG: COG0542; Pfam: PF02861, PF00004, PF07724; InterPro: IPR003593; chaperone protein ClpB 492062..494632 Helicobacter pylori 35A 12349121 YP_005769632.1 CDS ccdA NC_017360.1 494686 495408 D COG: COG0785; Pfam: PF02683; InterPro: IPR003834; cytochrome c biogenesis protein 494686..495408 Helicobacter pylori 35A 12349122 YP_005769633.1 CDS pyrC NC_017360.1 495418 496554 D COG: COG0044; dihydroorotase PyrC 495418..496554 Helicobacter pylori 35A 12349123 YP_005769634.1 CDS HMPREF4655_20509 NC_017360.1 496539 497768 D COG: COG0402; Pfam: PF01979; InterPro: IPR006680; amidohydrolase 496539..497768 Helicobacter pylori 35A 12349124 YP_005769635.1 CDS HMPREF4655_20510 NC_017360.1 497796 498071 D hypothetical protein 497796..498071 Helicobacter pylori 35A 12349125 YP_005769636.1 CDS miaB NC_017360.1 498081 499394 D COG: COG0621; Pfam: PF00919, PF04055; InterPro: IPR005839; tRNA-I(6)A37 thiotransferase enzyme MiaB 498081..499394 Helicobacter pylori 35A 12349126 YP_005769637.1 CDS HMPREF4655_20512 NC_017360.1 499434 500087 D COG: COG2121; Pfam: PF04028; InterPro: IPR007172; hypothetical protein 499434..500087 Helicobacter pylori 35A 12349127 YP_005769638.1 CDS HMPREF4655_20513 NC_017360.1 500080 501060 D hypothetical protein 500080..501060 Helicobacter pylori 35A 12349128 YP_005769639.1 CDS HMPREF4655_20514 NC_017360.1 501041 501583 D hypothetical protein 501041..501583 Helicobacter pylori 35A 12349129 YP_005769640.1 CDS HMPREF4655_20515 NC_017360.1 501580 502119 D hypothetical protein 501580..502119 Helicobacter pylori 35A 12349130 YP_005769641.1 CDS HMPREF4655_20516 NC_017360.1 502136 502534 D COG: COG0727; Pfam: PF03692; InterPro: IPR005358; hypothetical protein 502136..502534 Helicobacter pylori 35A 12349131 YP_005769642.1 CDS addB NC_017360.1 502571 503866 D COG: COG0457; ATP-dependent nuclease 502571..503866 Helicobacter pylori 35A 12349132 YP_005769643.1 CDS trpC NC_017360.1 503854 504414 D Indole-3-glycerol phosphate synthase 503854..504414 Helicobacter pylori 35A 12349133 YP_005769644.1 CDS fdx NC_017360.1 504470 504724 D COG: COG1145; Pfam: PF00037; ferredoxin 504470..504724 Helicobacter pylori 35A 12349134 YP_005769645.1 CDS gppA NC_017360.1 504734 506188 D COG: COG0248; Pfam: PF02541; InterPro: IPR003695; ppx/GppA family phosphatase 504734..506188 Helicobacter pylori 35A 12349135 YP_005769646.1 CDS rfaC NC_017360.1 506185 507195 D COG: COG0859; Pfam: PF01075; InterPro: IPR011908; lipopolysaccharide heptosyltransferase I 506185..507195 Helicobacter pylori 35A 12349136 YP_005769647.1 CDS htrB NC_017360.1 507162 508178 D COG: COG1560; Pfam: PF03279; InterPro: IPR004960; lipid A biosynthesis lauroyl acyltransferase 507162..508178 Helicobacter pylori 35A 12349137 YP_005769648.1 CDS tgt NC_017360.1 508239 509354 R COG: COG0343; Pfam: PF01702; InterPro: IPR002616; tRNA-guanine transglycosylase complement(508239..509354) Helicobacter pylori 35A 12349138 YP_005769649.1 CDS HMPREF4655_20524 NC_017360.1 509405 510847 D COG: COG3400; Pfam: PF02080; InterPro: IPR006037; hypothetical protein 509405..510847 Helicobacter pylori 35A 12349139 YP_005769650.1 CDS aroB NC_017360.1 510854 511885 D COG: COG0337; Pfam: PF01761; InterPro: IPR016037; 3-dehydroquinate synthase 510854..511885 Helicobacter pylori 35A 12349140 YP_005769651.1 CDS HMPREF4655_20526 NC_017360.1 511876 513447 D COG: COG0668; Pfam: PF00924; InterPro: IPR006685; mechanosensitive ion channel family protein 511876..513447 Helicobacter pylori 35A 12349141 YP_005769652.1 CDS HMPREF4655_20527 NC_017360.1 513444 514700 D COG: COG0621; Pfam: PF00919, PF04055; InterPro: IPR005839; 2-methylthioadenine synthase 513444..514700 Helicobacter pylori 35A 12349142 YP_005769653.1 CDS ftsH NC_017360.1 514687 516339 D COG: COG0465; Pfam: PF00004; InterPro: IPR003959; cell division protein (FtsH) 514687..516339 Helicobacter pylori 35A 12349143 YP_005769654.1 CDS HMPREF4655_20529 NC_017360.1 516336 516860 D hypothetical protein 516336..516860 Helicobacter pylori 35A 12349144 YP_005769655.1 CDS HMPREF4655_20530 NC_017360.1 516873 517346 D hypothetical protein 516873..517346 Helicobacter pylori 35A 12349145 YP_005769656.1 CDS lysA NC_017360.1 519239 520456 D COG: COG0019; Pfam: PF02784, PF00278; InterPro: IPR002986; diaminopimelate decarboxylase 519239..520456 Helicobacter pylori 35A 12349147 YP_005769657.1 CDS HMPREF4655_20534 NC_017360.1 520461 520751 D COG: COG1605; Pfam: PF01817; InterPro: IPR002701; chorismate mutase 520461..520751 Helicobacter pylori 35A 12349148 YP_005769658.1 CDS HMPREF4655_20535 NC_017360.1 520764 521636 D COG: COG4866; hypothetical protein 520764..521636 Helicobacter pylori 35A 12349149 YP_005769659.1 CDS pabB NC_017360.1 521637 523322 D COG: COG0147; Pfam: PF00425; InterPro: IPR005801; para-aminobenzoate synthase glutamine amidotransferase 521637..523322 Helicobacter pylori 35A 12349150 YP_005769660.1 CDS amiE NC_017360.1 523512 524531 D COG: COG0388; Pfam: PF00795; InterPro: IPR003010; amidase 523512..524531 Helicobacter pylori 35A 12349151 YP_005769661.1 CDS flgL NC_017360.1 524615 527101 R COG: COG1344; Pfam: PF00669; InterPro: IPR001029; flagellar hook-associated protein 3 complement(524615..527101) Helicobacter pylori 35A 12349152 YP_005769662.1 CDS rplU NC_017360.1 527333 527647 D COG: COG0261; Pfam: PF00829; InterPro: IPR001787; 50S ribosomal protein L21 527333..527647 Helicobacter pylori 35A 12349153 YP_005769663.1 CDS rpmA NC_017360.1 527662 527928 D COG: COG0211; Pfam: PF01016; InterPro: IPR001684; 50S ribosomal protein L27 527662..527928 Helicobacter pylori 35A 12349154 YP_005769664.1 CDS hbpA NC_017360.1 528045 529694 D COG: COG0747; Pfam: PF00496; InterPro: IPR000914; dipeptide/oligopeptide/nickel (Ni2+) ABC superfamily ATP binding cassette transporter, binding protein DppA 528045..529694 Helicobacter pylori 35A 12349155 YP_005769665.1 CDS dppB NC_017360.1 529704 530708 D COG: COG0601; Pfam: PF00528; InterPro: IPR000515; dipeptide/oligopeptide/nickel (Ni2+) ABC superfamily ATP binding cassette transporter, membrane protein DppB 529704..530708 Helicobacter pylori 35A 12349156 YP_005769666.1 CDS dppC NC_017360.1 530708 531565 D COG: COG1173; Pfam: PF00528; InterPro: IPR000515; dipeptide/oligopeptide/nickel (Ni2+) ABC superfamily ATP binding cassette transporter, membrane protein 530708..531565 Helicobacter pylori 35A 12349157 YP_005769667.1 CDS nikD NC_017360.1 531577 532440 D COG: COG0444; Pfam: PF00005, PF08352; InterPro: IPR003593; nickel ABC superfamily ATP binding cassette transporter, ABC protein 531577..532440 Helicobacter pylori 35A 12349158 YP_005769668.1 CDS nikE NC_017360.1 532437 533243 D COG: COG4608; Pfam: PF00005, PF08352; InterPro: IPR003593; nickel ABC superfamily ATP binding cassette transporter, ABC protein 532437..533243 Helicobacter pylori 35A 12349159 YP_005769669.1 CDS cgtA NC_017360.1 533263 534345 D COG: COG0536; Pfam: PF01018, PF01926; InterPro: IPR014100; obg family GTPase CgtA 533263..534345 Helicobacter pylori 35A 12349160 YP_005769670.1 CDS HMPREF4655_20547 NC_017360.1 534387 535382 D hypothetical protein 534387..535382 Helicobacter pylori 35A 12349161 YP_005769671.1 CDS HMPREF4655_20548 NC_017360.1 535631 536185 D hypothetical protein 535631..536185 Helicobacter pylori 35A 12349162 YP_005769672.1 CDS hemL NC_017360.1 536195 537487 D COG: COG0001; Pfam: PF00202; InterPro: IPR004639; glutamate-1-semialdehyde 2,1-aminomutase 536195..537487 Helicobacter pylori 35A 12349163 YP_005769673.1 CDS HMPREF4655_20550 NC_017360.1 537480 537752 D hypothetical protein 537480..537752 Helicobacter pylori 35A 12349164 YP_005769674.1 CDS HMPREF4655_20551 NC_017360.1 537778 538182 D hypothetical protein 537778..538182 Helicobacter pylori 35A 12349165 YP_005769675.1 CDS HMPREF4655_20552 NC_017360.1 538266 539150 D COG: COG0388; Pfam: PF00795; InterPro: IPR003010; N-carbamoyl-D-amino acid amidohydrolase 538266..539150 Helicobacter pylori 35A 12349166 YP_005769676.1 CDS HMPREF4655_20553 NC_017360.1 539163 540044 D COG: COG0726; Pfam: PF01522; InterPro: IPR002509; polysaccharide deacetylase 539163..540044 Helicobacter pylori 35A 12349167 YP_005769677.1 CDS ddeIR NC_017360.1 540096 540788 R type II site-specific deoxyribonuclease complement(540096..540788) Helicobacter pylori 35A 12349168 YP_005769678.1 CDS HMPREF4655_20555 NC_017360.1 540799 541908 R COG: COG0863; Pfam: PF01555; InterPro: IPR002941; DNA (cytosine-5-)-methyltransferase complement(540799..541908) Helicobacter pylori 35A 12349169 YP_005769679.1 CDS HMPREF4655_20556 NC_017360.1 542004 542372 D hypothetical protein 542004..542372 Helicobacter pylori 35A 12349170 YP_005769680.1 CDS HMPREF4655_20557 NC_017360.1 542372 543337 D COG: COG0523; Pfam: PF02492, PF07683; InterPro: IPR003495; cobalamin synthesis protein 542372..543337 Helicobacter pylori 35A 12349171 YP_005769681.1 CDS narK NC_017360.1 543343 544488 R COG: COG0477; Pfam: PF07690; InterPro: IPR011701; nitrite extrusion protein NarK complement(543343..544488) Helicobacter pylori 35A 12349172 YP_005769682.1 CDS HMPREF4655_20559 NC_017360.1 544987 545742 R COG: COG0748; Pfam: PF01243; InterPro: IPR012349; heme iron utilization protein complement(544987..545742) Helicobacter pylori 35A 12349173 YP_005769683.1 CDS argS NC_017360.1 545803 547428 R COG: COG0018; Pfam: PF03485, PF00750, PF05746; InterPro: IPR001278; arginine--tRNA ligase complement(545803..547428) Helicobacter pylori 35A 12349174 YP_005769684.1 CDS HMPREF4655_20561 NC_017360.1 547431 547670 R Pfam: PF02416; InterPro: IPR003369; Sec-independent protein translocase protein TatA complement(547431..547670) Helicobacter pylori 35A 12349175 YP_005769685.1 CDS gmk NC_017360.1 547740 548360 R COG: COG0194; Pfam: PF00625; InterPro: IPR008145; guanylate kinase complement(547740..548360) Helicobacter pylori 35A 12349176 YP_005769686.1 CDS HMPREF4655_20563 NC_017360.1 548353 549591 R hypothetical protein complement(548353..549591) Helicobacter pylori 35A 12349177 YP_005769687.1 CDS HMPREF4655_20564 NC_017360.1 549604 549729 R hypothetical protein complement(549604..549729) Helicobacter pylori 35A 12349178 YP_005769688.1 CDS nuc NC_017360.1 549733 550275 D COG: COG1502; Pfam: PF00614; membrane bound endonuclease 549733..550275 Helicobacter pylori 35A 12349179 YP_005769689.1 CDS HMPREF4655_20566 NC_017360.1 550283 551047 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(550283..551047) Helicobacter pylori 35A 12349180 YP_005769690.1 CDS flgH NC_017360.1 551150 551863 D COG: COG2063; Pfam: PF02107; InterPro: IPR000527; flagellar L-ring protein FlgH 551150..551863 Helicobacter pylori 35A 12349181 YP_005769691.1 CDS pseF NC_017360.1 551881 552564 D COG: COG1083; Pfam: PF02348; InterPro: IPR003329; pseudaminic acid CMP-transferase 551881..552564 Helicobacter pylori 35A 12349182 YP_005769692.1 CDS neuA2 NC_017360.1 552555 553427 D COG: COG3980; Pfam: PF02348; N-acylneuraminate cytidylyltransferase 552555..553427 Helicobacter pylori 35A 12349183 YP_005769693.1 CDS pseH NC_017360.1 553424 553966 D COG: COG1670; Pfam: PF00583; InterPro: IPR016181; pseudaminic acid biosynthesis N-acetyl transferase 553424..553966 Helicobacter pylori 35A 12349184 YP_005769694.1 CDS lpxK NC_017360.1 553899 554837 R COG: COG1663; Pfam: PF02606; InterPro: IPR003758; tetraacyldisaccharide 4'-kinase complement(553899..554837) Helicobacter pylori 35A 12349185 YP_005769695.1 CDS nadE NC_017360.1 554834 555616 R COG: COG0171; Pfam: PF02540; InterPro: IPR003694; NAD(+) synthase complement(554834..555616) Helicobacter pylori 35A 12349186 YP_005769696.1 CDS ilvC NC_017360.1 555864 556856 D COG: COG0059; Pfam: PF07991, PF01450; InterPro: IPR013023; ketol-acid reductoisomerase 555864..556856 Helicobacter pylori 35A 12349188 YP_005769697.1 CDS minD NC_017360.1 556875 557681 D COG: COG2894; Pfam: PF01656; InterPro: IPR010223; septum site-determining protein MinD 556875..557681 Helicobacter pylori 35A 12349189 YP_005769698.1 CDS minE NC_017360.1 557678 557911 D COG: COG0851; Pfam: PF03776; InterPro: IPR005527; cell division topological specificity factor MinE 557678..557911 Helicobacter pylori 35A 12349190 YP_005769699.1 CDS dprA NC_017360.1 557923 558723 D COG: COG0758; Pfam: PF02481; InterPro: IPR003488; DNA protecting protein DprA 557923..558723 Helicobacter pylori 35A 12349191 YP_005769700.1 CDS HMPREF4655_20577 NC_017360.1 558720 559124 D COG: COG0816; Pfam: PF03652; InterPro: IPR005227; Holliday junction resolvase family protein 558720..559124 Helicobacter pylori 35A 12349192 YP_005769701.1 CDS HMPREF4655_20578 NC_017360.1 559197 559466 D COG: COG0790; Pfam: PF08238; InterPro: IPR011990; hypothetical protein 559197..559466 Helicobacter pylori 35A 12349193 YP_005769702.1 CDS HMPREF4655_20579 NC_017360.1 559655 559993 D hypothetical protein 559655..559993 Helicobacter pylori 35A 12349194 YP_005769703.1 CDS HMPREF4655_20580 NC_017360.1 559977 560537 D hypothetical protein 559977..560537 Helicobacter pylori 35A 12349195 YP_005769704.1 CDS hcpA2 NC_017360.1 561254 561409 D beta-lactamase HcpA 561254..561409 Helicobacter pylori 35A 12349197 YP_005769705.1 CDS HMPREF4655_20585 NC_017360.1 561547 561933 D Pfam: PF06961; InterPro: IPR010718; hypothetical protein 561547..561933 Helicobacter pylori 35A 12349198 YP_005769706.1 CDS HMPREF4655_20586 NC_017360.1 561933 562718 D hypothetical protein 561933..562718 Helicobacter pylori 35A 12349199 YP_005769707.1 CDS HMPREF4655_20587 NC_017360.1 562708 563796 D hypothetical protein 562708..563796 Helicobacter pylori 35A 12349200 YP_005769708.1 CDS HMPREF4655_20588 NC_017360.1 563840 564721 R COG: COG0564; Pfam: PF00849; InterPro: IPR006145; pseudouridine synthase D complement(563840..564721) Helicobacter pylori 35A 12349201 YP_005769709.1 CDS recJ NC_017360.1 564721 566271 R COG: COG0608; Pfam: PF01368, PF02272; InterPro: IPR004610; single-stranded-DNA-specific exonuclease RecJ complement(564721..566271) Helicobacter pylori 35A 12349202 YP_005769710.1 CDS pyrG NC_017360.1 566280 567896 R COG: COG0504; Pfam: PF06418, PF00117; InterPro: IPR004468; CTP synthase complement(566280..567896) Helicobacter pylori 35A 12349203 YP_005769711.1 CDS HMPREF4655_20591 NC_017360.1 568161 568823 D hypothetical protein 568161..568823 Helicobacter pylori 35A 12349204 YP_005769712.1 CDS fliF NC_017360.1 568867 570570 D COG: COG1766; Pfam: PF01514, PF08345; InterPro: IPR000067; flagellar M-ring protein FliF 568867..570570 Helicobacter pylori 35A 12349205 YP_005769713.1 CDS fliG NC_017360.1 570589 571620 D COG: COG1536; Pfam: PF01706; InterPro: IPR000090; flagellar motor switch protein FliG 570589..571620 Helicobacter pylori 35A 12349206 YP_005769714.1 CDS fliH NC_017360.1 571607 572383 D COG: COG1317; Pfam: PF02108; flagellar export protein 571607..572383 Helicobacter pylori 35A 12349207 YP_005769715.1 CDS dxs NC_017360.1 572380 574236 D COG: COG1154; Pfam: PF02779, PF02780; InterPro: IPR005477; 1-deoxy-D-xylulose-5-phosphate synthase 572380..574236 Helicobacter pylori 35A 12349208 YP_005769716.1 CDS lepA NC_017360.1 574233 576041 D COG: COG0481; Pfam: PF00009, PF03144, PF00679, PF06421; InterPro: IPR006297; GTP-binding protein LepA 574233..576041 Helicobacter pylori 35A 12349209 YP_005769717.1 CDS HMPREF4655_20597 NC_017360.1 576056 576814 D COG: COG5048; hypothetical protein 576056..576814 Helicobacter pylori 35A 12349210 YP_005769718.1 CDS HMPREF4655_20598 NC_017360.1 576846 577028 D hypothetical protein 576846..577028 Helicobacter pylori 35A 12349211 YP_005769719.1 CDS HMPREF4655_20599 NC_017360.1 577122 577382 D hypothetical protein 577122..577382 Helicobacter pylori 35A 12349212 YP_005769720.1 CDS flgG2 NC_017360.1 577498 578307 R COG: COG4786; Pfam: PF00460; flagellar basal-body rod protein complement(577498..578307) Helicobacter pylori 35A 12349213 YP_005769721.1 CDS kgtP NC_017360.1 578357 579643 R COG: COG0477; Pfam: PF07690; InterPro: IPR011701; alpha-ketoglutarate permease complement(578357..579643) Helicobacter pylori 35A 12349214 YP_005769722.1 CDS ftsK NC_017360.1 579806 582322 R COG: COG1674; Pfam: PF01580; InterPro: IPR002543; DNA translocase FtsK complement(579806..582322) Helicobacter pylori 35A 12349215 YP_005769723.1 CDS HMPREF4655_20603 NC_017360.1 582319 584655 R COG: COG3893; hypothetical protein complement(582319..584655) Helicobacter pylori 35A 12349216 YP_005769724.1 CDS tkt NC_017360.1 584652 586577 R COG: COG0021; Pfam: PF00456, PF02779, PF02780; InterPro: IPR005478; transketolase complement(584652..586577) Helicobacter pylori 35A 12349217 YP_005769725.1 CDS ribF NC_017360.1 586624 587466 R COG: COG0196; Pfam: PF06574, PF01687; InterPro: IPR002606; riboflavin biosynthesis protein RibF complement(586624..587466) Helicobacter pylori 35A 12349218 YP_005769726.1 CDS rrmJ NC_017360.1 587432 588139 R COG: COG1189; Pfam: PF01479, PF01728; InterPro: IPR004538; ribosomal RNA large subunit methyltransferase J complement(587432..588139) Helicobacter pylori 35A 12349219 YP_005769727.1 CDS HMPREF4655_20607 NC_017360.1 588139 588654 R hypothetical protein complement(588139..588654) Helicobacter pylori 35A 12349220 YP_005769728.1 CDS pyrB NC_017360.1 588721 589644 D COG: COG0540; Pfam: PF02729, PF00185; InterPro: IPR002082; aspartate carbamoyltransferase 588721..589644 Helicobacter pylori 35A 12349221 YP_005769729.1 CDS HMPREF4655_20609 NC_017360.1 589936 591375 D Pfam: PF02521; InterPro: IPR003678; outer membrane protein 589936..591375 Helicobacter pylori 35A 12349222 YP_005769730.1 CDS msbA NC_017360.1 591467 593122 D COG: COG1132; Pfam: PF00664, PF00005; InterPro: IPR001140; lipid A export ATP-binding/permease MsbA 591467..593122 Helicobacter pylori 35A 12349223 YP_005769731.1 CDS HMPREF4655_20611 NC_017360.1 593116 593739 D hypothetical protein 593116..593739 Helicobacter pylori 35A 12349224 YP_005769732.1 CDS HMPREF4655_20612 NC_017360.1 593743 594312 D COG: COG1787; Pfam: PF04471; InterPro: IPR007560; hypothetical protein 593743..594312 Helicobacter pylori 35A 12349225 YP_005769733.1 CDS HMPREF4655_20613 NC_017360.1 594423 595607 D COG: COG1106; Pfam: PF02463; hypothetical protein 594423..595607 Helicobacter pylori 35A 12349226 YP_005769734.1 CDS HMPREF4655_20614 NC_017360.1 595600 596268 D hypothetical protein 595600..596268 Helicobacter pylori 35A 12349227 YP_005769735.1 CDS nixA NC_017360.1 596342 597337 D COG: COG3376; Pfam: PF03824; InterPro: IPR011541; high-affinity nickel-transporter 596342..597337 Helicobacter pylori 35A 12349228 YP_005769736.1 CDS HMPREF4655_20616 NC_017360.1 597341 597856 R hypothetical protein complement(597341..597856) Helicobacter pylori 35A 12349229 YP_005769737.1 CDS HMPREF4655_20617 NC_017360.1 597990 599300 D hypothetical protein 597990..599300 Helicobacter pylori 35A 12349230 YP_005769738.1 CDS HMPREF4655_20618 NC_017360.1 599518 599796 D hypothetical protein 599518..599796 Helicobacter pylori 35A 12349231 YP_005769739.1 CDS copP NC_017360.1 599985 600185 R Pfam: PF00403; InterPro: IPR006122; copper ion binding protein CopP complement(599985..600185) Helicobacter pylori 35A 12349232 YP_005769740.1 CDS copA NC_017360.1 600186 602384 R COG: COG2217; Pfam: PF00403, PF00122, PF00702; InterPro: IPR001757; P-ATPase superfamily P-type ATPase copper transporter complement(600186..602384) Helicobacter pylori 35A 12349233 YP_005769741.1 CDS pssA NC_017360.1 602408 603121 R COG: COG1183; Pfam: PF01066; InterPro: IPR004533; CDP-diacylglycerol--serine O-phosphatidyltransferase complement(602408..603121) Helicobacter pylori 35A 12349234 YP_005769742.1 CDS ftsH2 NC_017360.1 603368 605266 R COG: COG0465; Pfam: PF06480, PF00004, PF01434; InterPro: IPR005936; cell division protein FtsH complement(603368..605266) Helicobacter pylori 35A 12349235 YP_005769743.1 CDS prmA NC_017360.1 605275 606264 R COG: COG2264; Pfam: PF06325; InterPro: IPR010456; 50S ribosomal protein L11 methyltransferase complement(605275..606264) Helicobacter pylori 35A 12349236 YP_005769744.1 CDS cheY NC_017360.1 606265 606606 R COG: COG0784; Pfam: PF00072; InterPro: IPR001789; chemotaxis response regulator CheY complement(606265..606606) Helicobacter pylori 35A 12349237 YP_005769745.1 CDS horD2 NC_017360.1 606929 607531 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein HorD 606929..607531 Helicobacter pylori 35A 12349238 YP_005769746.1 CDS HMPREF4655_20626 NC_017360.1 607663 608070 R hypothetical protein complement(607663..608070) Helicobacter pylori 35A 12349240 YP_005769747.1 CDS HMPREF4655_20627 NC_017360.1 608073 608315 R hypothetical protein complement(608073..608315) Helicobacter pylori 35A 12349241 YP_005769748.1 CDS gidB NC_017360.1 608309 608845 R COG: COG0357; Pfam: PF02527; InterPro: IPR003682; 16S rRNA methyltransferase GidB complement(608309..608845) Helicobacter pylori 35A 12349242 YP_005769749.1 CDS queA NC_017360.1 608842 609879 R COG: COG0809; Pfam: PF02547; InterPro: IPR003699; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(608842..609879) Helicobacter pylori 35A 12349243 YP_005769750.1 CDS tatC NC_017360.1 609880 610629 R COG: COG0805; Pfam: PF00902; InterPro: IPR002033; twin arginine-targeting protein translocase TatC complement(609880..610629) Helicobacter pylori 35A 12349244 YP_005769751.1 CDS HMPREF4655_20631 NC_017360.1 610622 611104 R Pfam: PF02416; InterPro: IPR003998; sec-independent protein translocase TatB-like protein complement(610622..611104) Helicobacter pylori 35A 12349245 YP_005769752.1 CDS ruvB NC_017360.1 611172 612182 R COG: COG2255; Pfam: PF05496, PF00004, PF05491; InterPro: IPR004605; crossover junction ATP-dependent DNA helicase RuvB complement(611172..612182) Helicobacter pylori 35A 12349246 YP_005769753.1 CDS panB NC_017360.1 612183 612995 R COG: COG0413; Pfam: PF02548; InterPro: IPR003700; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(612183..612995) Helicobacter pylori 35A 12349247 YP_005769754.1 CDS HMPREF4655_20634 NC_017360.1 613144 613866 D Pfam: PF01856; outer membrane protein 613144..613866 Helicobacter pylori 35A 12349248 YP_005769755.1 CDS HMPREF4655_20635 NC_017360.1 613856 614710 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 613856..614710 Helicobacter pylori 35A 12349249 YP_005769756.1 CDS HMPREF4655_20636 NC_017360.1 614719 615657 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 614719..615657 Helicobacter pylori 35A 12349250 YP_005769757.1 CDS HMPREF4655_20637 NC_017360.1 615667 616989 D COG: COG0739; hypothetical protein 615667..616989 Helicobacter pylori 35A 12349251 YP_005769758.1 CDS minC NC_017360.1 616992 617579 D Pfam: PF03775; InterPro: IPR005526; septum site-determining protein MinC 616992..617579 Helicobacter pylori 35A 12349252 YP_005769759.1 CDS lpxC NC_017360.1 617576 618463 D COG: COG0774; Pfam: PF03331; InterPro: IPR004463; bifunctional UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase/(3R)-hydroxymyristoyl-[acyl-carrier- protein] dehydratase 617576..618463 Helicobacter pylori 35A 12349253 YP_005769760.1 CDS yeaZ NC_017360.1 618485 618958 D COG: COG1214; hypothetical protein 618485..618958 Helicobacter pylori 35A 12349254 YP_005769761.1 CDS thrB NC_017360.1 619013 619894 D COG: COG0083; Pfam: PF00288; InterPro: IPR000870; homoserine kinase 619013..619894 Helicobacter pylori 35A 12349255 YP_005769762.1 CDS HMPREF4655_20642 NC_017360.1 619881 620135 D COG: COG2740; Pfam: PF04296; InterPro: IPR007393; hypothetical protein 619881..620135 Helicobacter pylori 35A 12349256 YP_005769763.1 CDS infB NC_017360.1 620132 622984 D COG: COG0532; Pfam: PF04760, PF00009, PF03144; InterPro: IPR000178; translation initiation factor IF-2 620132..622984 Helicobacter pylori 35A 12349257 YP_005769764.1 CDS rbfA NC_017360.1 622984 623319 D COG: COG0858; Pfam: PF02033; InterPro: IPR015946; ribosome-binding factor A 622984..623319 Helicobacter pylori 35A 12349258 YP_005769765.1 CDS HMPREF4655_20645 NC_017360.1 623312 623752 D COG: COG0779; Pfam: PF02576; InterPro: IPR003728; hypothetical protein 623312..623752 Helicobacter pylori 35A 12349259 YP_005769766.1 CDS acsA NC_017360.1 623860 625848 R COG: COG0365; Pfam: PF00501; InterPro: IPR011904; acetate--CoA ligase complement(623860..625848) Helicobacter pylori 35A 12349260 YP_005769767.1 CDS HMPREF4655_20647 NC_017360.1 626053 627165 D COG: COG1408; Pfam: PF00149; InterPro: IPR004843; integral membrane protein 626053..627165 Helicobacter pylori 35A 12349261 YP_005769768.1 CDS HMPREF4655_20648 NC_017360.1 627498 628187 D COG: COG0745; Pfam: PF00072, PF00486; InterPro: IPR001789; DNA-binding response regulator 627498..628187 Helicobacter pylori 35A 12349262 YP_005769769.1 CDS HMPREF4655_20649 NC_017360.1 628232 628441 D pyrazinamidase/nicotinamidase 628232..628441 Helicobacter pylori 35A 12349263 YP_005769770.1 CDS HMPREF4655_20650 NC_017360.1 628683 629729 R COG: COG2404; Pfam: PF01368, PF02272; hypothetical protein complement(628683..629729) Helicobacter pylori 35A 12349264 YP_005769771.1 CDS flhA NC_017360.1 629757 631958 R COG: COG1298; Pfam: PF00771; InterPro: IPR006301; flagellar biosynthesis protein FlhA complement(629757..631958) Helicobacter pylori 35A 12349265 YP_005769772.1 CDS rpsO NC_017360.1 632097 632369 D COG: COG0184; Pfam: PF00312; InterPro: IPR009068; 30S ribosomal protein S15 632097..632369 Helicobacter pylori 35A 12349266 YP_005769773.1 CDS HMPREF4655_20653 NC_017360.1 632400 633689 D Pfam: PF04932; InterPro: IPR007016; hypothetical protein 632400..633689 Helicobacter pylori 35A 12349267 YP_005769774.1 CDS aroQ NC_017360.1 633819 634322 D COG: COG0757; Pfam: PF01220; InterPro: IPR001874; 3-dehydroquinate dehydratase 633819..634322 Helicobacter pylori 35A 12349268 YP_005769775.1 CDS HMPREF4655_20655 NC_017360.1 634336 635409 D COG: COG0006; Pfam: PF00557; InterPro: IPR000994; proline peptidase 634336..635409 Helicobacter pylori 35A 12349269 YP_005769776.1 CDS folK NC_017360.1 635409 635897 D COG: COG0801; Pfam: PF01288; InterPro: IPR000550; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase 635409..635897 Helicobacter pylori 35A 12349270 YP_005769777.1 CDS flhF NC_017360.1 635894 637270 D COG: COG1419; Pfam: PF02881, PF00448; InterPro: IPR000897; flagellar biosynthesis regulator FlhF 635894..637270 Helicobacter pylori 35A 12349271 YP_005769778.1 CDS ylxH NC_017360.1 637267 638151 D COG: COG0455; Pfam: PF01656; InterPro: IPR002586; ParA family ATPase 637267..638151 Helicobacter pylori 35A 12349272 YP_005769779.1 CDS HMPREF4655_20659 NC_017360.1 638158 638472 D hypothetical protein 638158..638472 Helicobacter pylori 35A 12349273 YP_005769780.1 CDS fliA NC_017360.1 638450 639226 D COG: COG1191; Pfam: PF04542, PF04545; InterPro: IPR014284; DNA-directed RNA polymerase sigma subunit FliA 638450..639226 Helicobacter pylori 35A 12349274 YP_005769781.1 CDS fliM NC_017360.1 639219 640283 D COG: COG1868; Pfam: PF02154, PF01052; InterPro: IPR001689; flagellar motor switch protein FliM 639219..640283 Helicobacter pylori 35A 12349275 YP_005769782.1 CDS fliY NC_017360.1 640287 641150 D Pfam: PF01052; InterPro: IPR012826; flagellar motor switch protein 640287..641150 Helicobacter pylori 35A 12349276 YP_005769783.1 CDS HMPREF4655_20663 NC_017360.1 641179 641715 D COG: COG2731; Pfam: PF04074; InterPro: IPR004375; hypothetical protein 641179..641715 Helicobacter pylori 35A 12349277 YP_005769784.1 CDS HMPREF4655_20664 NC_017360.1 641712 642209 D COG: COG4731; hypothetical protein 641712..642209 Helicobacter pylori 35A 12349278 YP_005769785.1 CDS fur NC_017360.1 642229 642681 R COG: COG0735; Pfam: PF01475; InterPro: IPR002481; ferric uptake regulation protein complement(642229..642681) Helicobacter pylori 35A 12349279 YP_005769786.1 CDS HMPREF4655_20666 NC_017360.1 642841 644016 R COG: COG2256; Pfam: PF00004; InterPro: IPR003593; crossover junction endodeoxyribonuclease ATPase complement(642841..644016) Helicobacter pylori 35A 12349280 YP_005769787.1 CDS hspR NC_017360.1 644013 644384 R COG: COG0789; Pfam: PF00376; InterPro: IPR000551; transcriptional activator of heat-shock protein complement(644013..644384) Helicobacter pylori 35A 12349281 YP_005769788.1 CDS dnaJ NC_017360.1 644394 645260 R COG: COG2214; Pfam: PF00226, PF01556; InterPro: IPR015609; chaperone DnaJ complement(644394..645260) Helicobacter pylori 35A 12349282 YP_005769789.1 CDS HMPREF4655_20669 NC_017360.1 645428 646678 D hypothetical protein 645428..646678 Helicobacter pylori 35A 12349283 YP_005769790.1 CDS HMPREF4655_20670 NC_017360.1 646700 647476 R COG: COG0258; hypothetical protein complement(646700..647476) Helicobacter pylori 35A 12349284 YP_005769791.1 CDS HMPREF4655_20671 NC_017360.1 647797 648693 R Pfam: PF00072, PF02954; InterPro: IPR001789; response regulator complement(647797..648693) Helicobacter pylori 35A 12349285 YP_005769792.1 CDS ispDF NC_017360.1 648710 649930 R Pfam: PF01128, PF02542; InterPro: IPR001228; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase complement(648710..649930) Helicobacter pylori 35A 12349286 YP_005769793.1 CDS htrA NC_017360.1 649952 651382 R COG: COG0265; Pfam: PF00089, PF00595; InterPro: IPR011782; serine protease HtrA complement(649952..651382) Helicobacter pylori 35A 12349287 YP_005769794.1 CDS lysP2 NC_017360.1 651427 652869 R COG: COG0833; Pfam: PF00324; InterPro: IPR002293; APC family lysine-specific permease complement(651427..652869) Helicobacter pylori 35A 12349288 YP_005769795.1 CDS pgsA NC_017360.1 653059 653598 R COG: COG0558; Pfam: PF01066; InterPro: IPR004570; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(653059..653598) Helicobacter pylori 35A 12349289 YP_005769796.1 CDS HMPREF4655_20676 NC_017360.1 653595 654203 R hypothetical protein complement(653595..654203) Helicobacter pylori 35A 12349290 YP_005769797.1 CDS hdhA NC_017360.1 654213 655001 R COG: COG1028; Pfam: PF00106; InterPro: IPR002198; short chain dehydrogenase/reductase family oxidoreductase complement(654213..655001) Helicobacter pylori 35A 12349291 YP_005769798.1 CDS dapA NC_017360.1 654998 655900 R COG: COG0329; Pfam: PF00701; InterPro: IPR002220; dihydrodipicolinate synthase complement(654998..655900) Helicobacter pylori 35A 12349292 YP_005769799.1 CDS pqqE NC_017360.1 655915 657249 R COG: COG0612; Pfam: PF00675, PF05193; InterPro: IPR011237; coenzyme PQQ synthesis protein E (pyrroloquinoline quinone biosynthesis protein E) complement(655915..657249) Helicobacter pylori 35A 12349293 YP_005769800.1 CDS pyrD NC_017360.1 657246 658301 R COG: COG0167; Pfam: PF01180; InterPro: IPR005719; dihydroorotate oxidase complement(657246..658301) Helicobacter pylori 35A 12349294 YP_005769801.1 CDS ppk NC_017360.1 658338 660365 R COG: COG0855; Pfam: PF02503; InterPro: IPR003414; polyphosphate kinase complement(658338..660365) Helicobacter pylori 35A 12349295 YP_005769802.1 CDS hsdS NC_017360.1 661025 662131 R COG: COG0732; Pfam: PF01420; type I restriction-modification enzyme, S subunit complement(661025..662131) Helicobacter pylori 35A 12349297 YP_005769803.1 CDS hsdM NC_017360.1 662124 663755 R Pfam: PF02384; InterPro: IPR003356; type I restriction enzyme M protein complement(662124..663755) Helicobacter pylori 35A 12349298 YP_005769804.1 CDS hsdR2 NC_017360.1 663745 666012 R COG: COG0610; Pfam: PF04851; InterPro: IPR006935; type I restriction enzyme R protein complement(663745..666012) Helicobacter pylori 35A 12349299 YP_005769805.1 CDS hsdR3 NC_017360.1 666186 666872 R Pfam: PF04313; InterPro: IPR007409; type I restriction enzyme R protein complement(666186..666872) Helicobacter pylori 35A 12349300 YP_005769806.1 CDS HMPREF4655_20686 NC_017360.1 666920 668815 R COG: COG2604; Pfam: PF01973; InterPro: IPR002826; hypothetical protein complement(666920..668815) Helicobacter pylori 35A 12349301 YP_005769807.1 CDS HMPREF4655_20687 NC_017360.1 668841 669608 R hypothetical protein complement(668841..669608) Helicobacter pylori 35A 12349302 YP_005769808.1 CDS HMPREF4655_20688 NC_017360.1 669618 669965 R hypothetical protein complement(669618..669965) Helicobacter pylori 35A 12349303 YP_005769809.1 CDS HMPREF4655_20689 NC_017360.1 669934 671421 R hypothetical protein complement(669934..671421) Helicobacter pylori 35A 12349304 YP_005769810.1 CDS HMPREF4655_20690 NC_017360.1 671433 671921 R hypothetical protein complement(671433..671921) Helicobacter pylori 35A 12349305 YP_005769811.1 CDS pepF NC_017360.1 671906 673642 R COG: COG1164; Pfam: PF08439, PF01432; InterPro: IPR011977; oligoendopeptidase F complement(671906..673642) Helicobacter pylori 35A 12349306 YP_005769812.1 CDS kefB NC_017360.1 673739 674989 R COG: COG0475; Pfam: PF00999; InterPro: IPR006153; glutathione-regulated potassium-efflux system protein complement(673739..674989) Helicobacter pylori 35A 12349307 YP_005769813.1 CDS HMPREF4655_20693 NC_017360.1 675308 675868 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(675308..675868) Helicobacter pylori 35A 12349308 YP_005769814.1 CDS pyrE NC_017360.1 675912 676046 R orotate phosphoribosyltransferase complement(675912..676046) Helicobacter pylori 35A 12349309 YP_005769815.1 CDS modD NC_017360.1 677428 678225 D COG: COG1118; Pfam: PF00005; InterPro: IPR003439; molybdenum ABC superfamily ATP binding cassette transporter 677428..678225 Helicobacter pylori 35A 12349312 YP_005769816.1 CDS gltX1 NC_017360.1 678310 679701 R COG: COG0008; Pfam: PF00749; InterPro: IPR004527; glutamate--tRNA ligase complement(678310..679701) Helicobacter pylori 35A 12349313 YP_005769817.1 CDS HMPREF4655_20701 NC_017360.1 679819 680919 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 679819..680919 Helicobacter pylori 35A 12349314 YP_005769818.1 CDS vspIM NC_017360.1 680928 682565 D COG: COG0827; adenine specific DNA methyltransferase 680928..682565 Helicobacter pylori 35A 12349315 YP_005769819.1 CDS HMPREF4655_20703 NC_017360.1 682531 683379 D COG: COG0859; DD-heptosyltransferase 682531..683379 Helicobacter pylori 35A 12349316 YP_005769820.1 CDS typA NC_017360.1 683425 685224 D COG: COG1217; Pfam: PF00009, PF03144, PF00679; InterPro: IPR006298; GTP-binding protein TypA/BipA 683425..685224 Helicobacter pylori 35A 12349317 YP_005769821.1 CDS HMPREF4655_20707 NC_017360.1 686174 686797 D type II restriction endonuclease 686174..686797 Helicobacter pylori 35A 12349319 YP_005769822.1 CDS hphIAM NC_017360.1 686893 687948 D COG: COG0270; Pfam: PF00145; InterPro: IPR001525; DNA (cytosine-5-)-methyltransferase 686893..687948 Helicobacter pylori 35A 12349320 YP_005769823.1 CDS HMPREF4655_20711 NC_017360.1 688931 689875 R COG: COG0753; InterPro: IPR011614; catalase like protein complement(688931..689875) Helicobacter pylori 35A 12349322 YP_005769824.1 CDS hofC NC_017360.1 690156 691742 D Pfam: PF02521; InterPro: IPR003678; hof-family outer membrane protein 690156..691742 Helicobacter pylori 35A 12349323 YP_005769825.1 CDS hofD NC_017360.1 691814 693211 D Pfam: PF02521; InterPro: IPR003678; hof-family outer membrane protein 691814..693211 Helicobacter pylori 35A 12349324 YP_005769826.1 CDS HMPREF4655_20714 NC_017360.1 693616 694017 D hypothetical protein 693616..694017 Helicobacter pylori 35A 12349325 YP_005769827.1 CDS HMPREF4655_20715 NC_017360.1 694117 695538 D hypothetical protein 694117..695538 Helicobacter pylori 35A 12349326 YP_005769828.1 CDS HMPREF4655_20716 NC_017360.1 695510 695875 D hypothetical protein 695510..695875 Helicobacter pylori 35A 12349327 YP_005769829.1 CDS HMPREF4655_20717 NC_017360.1 696287 697012 R COG: COG1432; hypothetical protein complement(696287..697012) Helicobacter pylori 35A 12349328 YP_005769830.1 CDS ruvC NC_017360.1 697144 697626 D COG: COG0817; Pfam: PF02075; InterPro: IPR002176; crossover junction endoribonuclease subunit C 697144..697626 Helicobacter pylori 35A 12349329 YP_005769831.1 CDS frpB2 NC_017360.1 697638 700043 R COG: COG1629; Pfam: PF07715, PF00593; InterPro: IPR000531; iron-regulated outer membrane protein complement(697638..700043) Helicobacter pylori 35A 12349330 YP_005769832.1 CDS katA NC_017360.1 700288 701850 D COG: COG0753; Pfam: PF00199; InterPro: IPR011614; catalase 700288..701850 Helicobacter pylori 35A 12349331 YP_005769833.1 CDS kapA NC_017360.1 702001 702876 D KapA protein 702001..702876 Helicobacter pylori 35A 12349332 YP_005769834.1 CDS HMPREF4655_20722 NC_017360.1 702961 703176 D hypothetical protein 702961..703176 Helicobacter pylori 35A 12349333 YP_005769835.1 CDS phnA NC_017360.1 703215 703544 R COG: COG2824; Pfam: PF08274, PF03831; InterPro: IPR004624; alkylphosphonate uptake protein complement(703215..703544) Helicobacter pylori 35A 12349334 YP_005769836.1 CDS HMPREF4655_20724 NC_017360.1 703642 703839 D sugar fermentation stimulation protein-like protein 703642..703839 Helicobacter pylori 35A 12349335 YP_005769837.1 CDS cdh NC_017360.1 703836 704570 D COG: COG2134; Pfam: PF02611; InterPro: IPR003763; CDP-diacylglycerol diphosphatase 703836..704570 Helicobacter pylori 35A 12349336 YP_005769838.1 CDS flgE NC_017360.1 704772 706928 D COG: COG1749; Pfam: PF00460, PF07196, PF07559, PF06429; InterPro: IPR012835; flagellar hook protein FlgE 704772..706928 Helicobacter pylori 35A 12349337 YP_005769839.1 CDS hypA NC_017360.1 706987 707340 D COG: COG0375; Pfam: PF01155; InterPro: IPR000688; hydrogenase nickel incorporation protein HypA 706987..707340 Helicobacter pylori 35A 12349338 YP_005769840.1 CDS HMPREF4655_20728 NC_017360.1 707347 707808 D hypothetical protein 707347..707808 Helicobacter pylori 35A 12349339 YP_005769841.1 CDS lpxB NC_017360.1 707808 708890 D COG: COG0763; Pfam: PF02684; InterPro: IPR003835; lipid-A-disaccharide synthase 707808..708890 Helicobacter pylori 35A 12349340 YP_005769842.1 CDS greA NC_017360.1 708931 709425 D COG: COG0782; Pfam: PF03449, PF01272; InterPro: IPR001437; transcription elongation factor GreA 708931..709425 Helicobacter pylori 35A 12349341 YP_005769843.1 CDS dut NC_017360.1 709415 709852 D COG: COG0756; Pfam: PF00692; InterPro: IPR008181; dUTP diphosphatase 709415..709852 Helicobacter pylori 35A 12349342 YP_005769844.1 CDS HMPREF4655_20732 NC_017360.1 709849 710505 D hypothetical protein 709849..710505 Helicobacter pylori 35A 12349343 YP_005769845.1 CDS HMPREF4655_20733 NC_017360.1 710510 712147 D plasminogen-binding protein PgbB 710510..712147 Helicobacter pylori 35A 12349344 YP_005769846.1 CDS coaX NC_017360.1 712152 712823 D COG: COG1521; Pfam: PF03309; InterPro: IPR004619; pantothenate kinase 712152..712823 Helicobacter pylori 35A 12349345 YP_005769847.1 CDS HMPREF4655_20735 NC_017360.1 712814 713551 D COG: COG2836; hypothetical protein 712814..713551 Helicobacter pylori 35A 12349346 YP_005769848.1 CDS HMPREF4655_20736 NC_017360.1 713538 714062 D COG: COG0241; InterPro: IPR004446; D,D-heptose 1,7-bisphosphate phosphatase 713538..714062 Helicobacter pylori 35A 12349347 YP_005769849.1 CDS hldD NC_017360.1 714071 715063 D COG: COG0451; Pfam: PF01370; InterPro: IPR011912; ADP-glyceromanno-heptose 6-epimerase 714071..715063 Helicobacter pylori 35A 12349348 YP_005769850.1 CDS hldE NC_017360.1 715060 716445 D COG: COG2870; Pfam: PF00294, PF01467; InterPro: IPR011913; bifunctional protein hldE (D-beta-D-heptose 7-phosphate kinase/D-beta-D-heptose 1-phosphate adenosyltransferase) 715060..716445 Helicobacter pylori 35A 12349349 YP_005769851.1 CDS gmhA NC_017360.1 716438 717016 D COG: COG0279; Pfam: PF01380; InterPro: IPR004515; phosphoheptose isomerase 716438..717016 Helicobacter pylori 35A 12349350 YP_005769852.1 CDS HMPREF4655_20740 NC_017360.1 716988 717185 D hypothetical protein 716988..717185 Helicobacter pylori 35A 12349351 YP_005769853.1 CDS guaC NC_017360.1 717182 718183 R COG: COG0516; Pfam: PF00478; InterPro: IPR001093; GMP reductase complement(717182..718183) Helicobacter pylori 35A 12349352 YP_005769854.1 CDS HMPREF4655_20742 NC_017360.1 718408 720009 D COG: COG0488; Pfam: PF00005; InterPro: IPR003439; ABC superfamily ATP binding cassette transporter, ABC protein 718408..720009 Helicobacter pylori 35A 12349353 YP_005769855.1 CDS HMPREF4655_20743 NC_017360.1 720006 720938 D COG: COG2958; Pfam: PF04373; InterPro: IPR007468; hypothetical protein 720006..720938 Helicobacter pylori 35A 12349354 YP_005769856.1 CDS HMPREF4655_20744 NC_017360.1 720955 721641 R COG: COG0671; Pfam: PF01569; InterPro: IPR016118; phosphatidic acid phosphatase complement(720955..721641) Helicobacter pylori 35A 12349355 YP_005769857.1 CDS haeIIIR NC_017360.1 721795 722748 R type II site-specific deoxyribonuclease complement(721795..722748) Helicobacter pylori 35A 12349356 YP_005769858.1 CDS ngoPIIM NC_017360.1 722745 723728 R COG: COG0270; Pfam: PF00145; InterPro: IPR001525; DNA (cytosine-5-)-methyltransferase complement(722745..723728) Helicobacter pylori 35A 12349357 YP_005769859.1 CDS hsdM2 NC_017360.1 723913 725502 D COG: COG0286; Pfam: PF02384; InterPro: IPR004546; site-specific DNA-methyltransferase (adenine-specific) 723913..725502 Helicobacter pylori 35A 12349358 YP_005769860.1 CDS HMPREF4655_20748 NC_017360.1 725495 726784 D COG: COG0732; Pfam: PF01420; InterPro: IPR000055; type I site-specific deoxyribonuclease 725495..726784 Helicobacter pylori 35A 12349359 YP_005769861.1 CDS HMPREF4655_20749 NC_017360.1 726799 726960 R hypothetical protein complement(726799..726960) Helicobacter pylori 35A 12349360 YP_005769862.1 CDS HMPREF4655_20750 NC_017360.1 726959 729976 D COG: COG0610; Pfam: PF04313, PF04851; InterPro: IPR004473; type I site-specific deoxyribonuclease 726959..729976 Helicobacter pylori 35A 12349361 YP_005769863.1 CDS thiM NC_017360.1 730069 730848 D COG: COG2145; Pfam: PF02110; InterPro: IPR000417; hydroxyethylthiazole kinase 730069..730848 Helicobacter pylori 35A 12349362 YP_005769864.1 CDS thiD NC_017360.1 730845 731654 D COG: COG0351; Pfam: PF08543; InterPro: IPR004399; phosphomethylpyrimidine kinase 730845..731654 Helicobacter pylori 35A 12349363 YP_005769865.1 CDS thiE NC_017360.1 731647 732306 D COG: COG0352; Pfam: PF02581; InterPro: IPR003733; thiamine-phosphate diphosphorylase 731647..732306 Helicobacter pylori 35A 12349364 YP_005769866.1 CDS HMPREF4655_20754 NC_017360.1 732361 733098 R hypothetical protein complement(732361..733098) Helicobacter pylori 35A 12349365 YP_005769867.1 CDS coaBC NC_017360.1 733098 734375 R COG: COG0452; Pfam: PF02441, PF04127; InterPro: IPR005252; coenzyme A biosynthesis bifunctional protein CoaBC complement(733098..734375) Helicobacter pylori 35A 12349366 YP_005769868.1 CDS capD NC_017360.1 734372 735355 R COG: COG1086; Pfam: PF02719; InterPro: IPR003869; UDP-glucose 4-epimerase complement(734372..735355) Helicobacter pylori 35A 12349367 YP_005769869.1 CDS ompP NC_017360.1 735370 737133 R COG: COG2067; Pfam: PF03349; InterPro: IPR005017; outer membrane protein P1 complement(735370..737133) Helicobacter pylori 35A 12349368 YP_005769870.1 CDS HMPREF4655_20758 NC_017360.1 737130 737741 R hypothetical protein complement(737130..737741) Helicobacter pylori 35A 12349369 YP_005769871.1 CDS HMPREF4655_20759 NC_017360.1 737760 738428 R COG: COG3018; Pfam: PF04164; InterPro: IPR007293; hypothetical protein complement(737760..738428) Helicobacter pylori 35A 12349370 YP_005769872.1 CDS hup NC_017360.1 739050 739334 R COG: COG0776; Pfam: PF00216; InterPro: IPR000119; DNA-binding protein HU complement(739050..739334) Helicobacter pylori 35A 12349372 YP_005769873.1 CDS engA NC_017360.1 739477 740862 R COG: COG1160; Pfam: PF01926; InterPro: IPR005225; ribosome-associated GTPase EngA complement(739477..740862) Helicobacter pylori 35A 12349373 YP_005769874.1 CDS HMPREF4655_20762 NC_017360.1 740939 741829 D hypothetical protein 740939..741829 Helicobacter pylori 35A 12349374 YP_005769875.1 CDS speE NC_017360.1 741918 742706 D Pfam: PF01564; InterPro: IPR001045; spermidine synthase 741918..742706 Helicobacter pylori 35A 12349375 YP_005769876.1 CDS coaE NC_017360.1 742708 743298 D COG: COG0237; Pfam: PF01121; InterPro: IPR001977; dephospho-CoA kinase 742708..743298 Helicobacter pylori 35A 12349376 YP_005769877.1 CDS gatA NC_017360.1 743357 744718 D COG: COG0154; Pfam: PF01425; InterPro: IPR004412; glutamyl-tRNA(Gln) amidotransferase subunit A 743357..744718 Helicobacter pylori 35A 12349377 YP_005769878.1 CDS guaB NC_017360.1 744728 746173 D COG: COG0516; Pfam: PF00478, PF00571; InterPro: IPR013785; IMP dehydrogenase 744728..746173 Helicobacter pylori 35A 12349378 YP_005769879.1 CDS atpB NC_017360.1 746294 746974 D COG: COG0356; Pfam: PF00119; InterPro: IPR000568; ATP synthase F0 subunit A 746294..746974 Helicobacter pylori 35A 12349379 YP_005769880.1 CDS HMPREF4655_20768 NC_017360.1 747287 747535 D COG: COG0724; Pfam: PF00076; InterPro: IPR015465; peptidyl-prolyl cis-trans isomerase 747287..747535 Helicobacter pylori 35A 12349380 YP_005769881.1 CDS lex2B NC_017360.1 747732 748553 R COG: COG3306; Pfam: PF01755; InterPro: IPR002654; lipooligosaccharide 5G8 epitope biosynthesis-associated protein complement(747732..748553) Helicobacter pylori 35A 12349381 YP_005769882.1 CDS trxB NC_017360.1 748721 749656 R COG: COG0492; Pfam: PF07992, PF00070; InterPro: IPR005982; thioredoxin-disulfide reductase complement(748721..749656) Helicobacter pylori 35A 12349382 YP_005769883.1 CDS trxA NC_017360.1 749662 749982 R COG: COG0526; Pfam: PF00085; InterPro: IPR012335; thioredoxin complement(749662..749982) Helicobacter pylori 35A 12349383 YP_005769884.1 CDS HMPREF4655_20772 NC_017360.1 750071 750415 R COG: COG0792; Pfam: PF02021; InterPro: IPR003509; endonuclease complement(750071..750415) Helicobacter pylori 35A 12349384 YP_005769885.1 CDS hom NC_017360.1 750416 751681 R COG: COG0460; Pfam: PF03447, PF00742, PF01842; InterPro: IPR001342; homoserine dehydrogenase complement(750416..751681) Helicobacter pylori 35A 12349385 YP_005769886.1 CDS uvrC NC_017360.1 751692 753476 R COG: COG0322; Pfam: PF01541, PF02151, PF08459; InterPro: IPR004791; excision endonuclease subunit UvrC complement(751692..753476) Helicobacter pylori 35A 12349386 YP_005769887.1 CDS HMPREF4655_20775 NC_017360.1 753477 753938 R hypothetical protein complement(753477..753938) Helicobacter pylori 35A 12349387 YP_005769888.1 CDS HMPREF4655_20776 NC_017360.1 753930 754109 D hypothetical protein 753930..754109 Helicobacter pylori 35A 12349388 YP_005769889.1 CDS proV NC_017360.1 754121 754762 R COG: COG1125; Pfam: PF00005; InterPro: IPR003593; glycine betaine/L-proline ABC superfamily ATP binding cassette transporter, ABC protein complement(754121..754762) Helicobacter pylori 35A 12349389 YP_005769890.1 CDS proWX NC_017360.1 754766 756322 R COG: COG1732; Pfam: PF00528, PF04069; InterPro: IPR007210; glycine betaine ABC superfamily ATP binding cassette transporter, membrane protein complement(754766..756322) Helicobacter pylori 35A 12349390 YP_005769891.1 CDS HMPREF4655_20779 NC_017360.1 756386 756859 R hypothetical protein complement(756386..756859) Helicobacter pylori 35A 12349391 YP_005769892.1 CDS motB NC_017360.1 756863 757630 R COG: COG1360; Pfam: PF00691; InterPro: IPR006665; flagellar motor protein MotB complement(756863..757630) Helicobacter pylori 35A 12349392 YP_005769893.1 CDS motA NC_017360.1 757633 758376 R COG: COG1291; Pfam: PF01618; InterPro: IPR002898; flagellar motor protein MotA complement(757633..758376) Helicobacter pylori 35A 12349393 YP_005769894.1 CDS thiF NC_017360.1 758422 759189 R COG: COG0476; Pfam: PF00899, PF05237; InterPro: IPR016040; ThiF family protein complement(758422..759189) Helicobacter pylori 35A 12349394 YP_005769895.1 CDS HMPREF4655_20783 NC_017360.1 759190 759807 R COG: COG0491; Pfam: PF00753; InterPro: IPR001279; metallo-beta-lactamase complement(759190..759807) Helicobacter pylori 35A 12349395 YP_005769896.1 CDS HMPREF4655_20784 NC_017360.1 759940 760950 D COG: COG1565; hypothetical protein 759940..760950 Helicobacter pylori 35A 12349396 YP_005769897.1 CDS HMPREF4655_20785 NC_017360.1 761012 761152 D hypothetical protein 761012..761152 Helicobacter pylori 35A 12349397 YP_005769898.1 CDS HMPREF4655_20786 NC_017360.1 761384 761710 D hypothetical protein 761384..761710 Helicobacter pylori 35A 12349398 YP_005769899.1 CDS HMPREF4655_20787 NC_017360.1 761689 762291 D COG: COG0742; Pfam: PF03602; InterPro: IPR004398; RsmD family RNA methyltransferase 761689..762291 Helicobacter pylori 35A 12349399 YP_005769900.1 CDS fliL NC_017360.1 762300 762851 D COG: COG1580; Pfam: PF03748; InterPro: IPR005503; flagellar basal body-associated protein FliL 762300..762851 Helicobacter pylori 35A 12349400 YP_005769901.1 CDS acpS NC_017360.1 762858 763214 D COG: COG0736; Pfam: PF01648; InterPro: IPR002582; holo-[acyl-carrier-protein] synthase 762858..763214 Helicobacter pylori 35A 12349401 YP_005769902.1 CDS HMPREF4655_20792 NC_017360.1 765777 766394 R COG: COG1451; Pfam: PF01863; InterPro: IPR002725; metalloprotease complement(765777..766394) Helicobacter pylori 35A 12349403 YP_005769903.1 CDS lex2B2 NC_017360.1 766473 767315 D COG: COG3306; Pfam: PF01755; InterPro: IPR002654; lipooligosaccharide 5G8 epitope biosynthesis-associated protein 766473..767315 Helicobacter pylori 35A 12349404 YP_005769904.1 CDS HMPREF4655_20794 NC_017360.1 767537 768205 R hypothetical protein complement(767537..768205) Helicobacter pylori 35A 12349405 YP_005769905.1 CDS HMPREF4655_20795 NC_017360.1 768177 768362 D hypothetical protein 768177..768362 Helicobacter pylori 35A 12349406 YP_005769906.1 CDS ribB NC_017360.1 768580 769614 D COG: COG0108; Pfam: PF00926; InterPro: IPR000422; 3,4-dihydroxy-2-butanone 4-phosphate synthase 768580..769614 Helicobacter pylori 35A 12349407 YP_005769907.1 CDS HMPREF4655_20797 NC_017360.1 769702 770541 D hypothetical protein 769702..770541 Helicobacter pylori 35A 12349408 YP_005769908.1 CDS ribA NC_017360.1 770660 771238 D COG: COG0807; Pfam: PF00925; InterPro: IPR000926; GTP cyclohydrolase II 770660..771238 Helicobacter pylori 35A 12349409 YP_005769909.1 CDS moaE NC_017360.1 771536 771973 D COG: COG0314; Pfam: PF02391; InterPro: IPR003448; molybdenum cofactorbiosynthesis protein large subunit 771536..771973 Helicobacter pylori 35A 12349410 YP_005769910.1 CDS pcd NC_017360.1 771986 772543 D COG: COG0521; Pfam: PF00994; InterPro: IPR001453; 4a-hydroxytetrahydrobiopterin dehydratase 771986..772543 Helicobacter pylori 35A 12349411 YP_005769911.1 CDS moaC NC_017360.1 772525 773001 D COG: COG0315; Pfam: PF01967; InterPro: IPR002820; molybdenum cofactor biosynthesis protein C 772525..773001 Helicobacter pylori 35A 12349412 YP_005769912.1 CDS HMPREF4655_20802 NC_017360.1 773120 773902 D Pfam: PF05211; InterPro: IPR007876; neuraminyllactose-binding hemagglutinin 773120..773902 Helicobacter pylori 35A 12349413 YP_005769913.1 CDS HMPREF4655_20803 NC_017360.1 773934 774770 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 773934..774770 Helicobacter pylori 35A 12349414 YP_005769914.1 CDS tig NC_017360.1 774883 776238 D COG: COG0544; Pfam: PF05697, PF00254, PF05698; InterPro: IPR005215; trigger factor 774883..776238 Helicobacter pylori 35A 12349415 YP_005769915.1 CDS clpP NC_017360.1 776261 776848 D COG: COG0740; Pfam: PF00574; InterPro: IPR001907; ATP-dependent Clp protease proteolytic subunit 776261..776848 Helicobacter pylori 35A 12349416 YP_005769916.1 CDS def NC_017360.1 776853 777380 D COG: COG0242; Pfam: PF01327; InterPro: IPR000181; peptide deformylase 776853..777380 Helicobacter pylori 35A 12349417 YP_005769917.1 CDS HMPREF4655_20807 NC_017360.1 777383 778903 D COG: COG0606; Pfam: PF01078; InterPro: IPR004482; Mg chelatase-like protein 777383..778903 Helicobacter pylori 35A 12349418 YP_005769918.1 CDS cadA NC_017360.1 778928 780988 D COG: COG2217; Pfam: PF00122, PF00702; InterPro: IPR001757; P-ATPase superfamily P-type ATPase cadmium transporter 778928..780988 Helicobacter pylori 35A 12349419 YP_005769919.1 CDS HMPREF4655_20809 NC_017360.1 781024 782313 D COG: COG0732; Pfam: PF01420; InterPro: IPR000055; type I site-specific deoxyribonuclease 781024..782313 Helicobacter pylori 35A 12349420 YP_005769920.1 CDS HMPREF4655_20810 NC_017360.1 782328 782489 R hypothetical protein complement(782328..782489) Helicobacter pylori 35A 12349421 YP_005769921.1 CDS hofF NC_017360.1 782709 784208 R Pfam: PF02521; InterPro: IPR003678; hof-family outer membrane protein complement(782709..784208) Helicobacter pylori 35A 12349422 YP_005769922.1 CDS HMPREF4655_20812 NC_017360.1 784489 785781 R COG: COG4591; Pfam: PF02687; InterPro: IPR003838; ABC superfamily ATP binding cassette transporter, ABC protein complement(784489..785781) Helicobacter pylori 35A 12349423 YP_005769923.1 CDS secA NC_017360.1 785711 788308 R COG: COG0653; Pfam: PF07517, PF01043, PF00271, PF07516, PF02810; InterPro: IPR000185; preprotein translocase subunit SecA complement(785711..788308) Helicobacter pylori 35A 12349424 YP_005769924.1 CDS lolA NC_017360.1 788428 789009 D COG: COG2834; Pfam: PF03548; InterPro: IPR004564; outer-membrane lipoprotein carrier protein 788428..789009 Helicobacter pylori 35A 12349425 YP_005769925.1 CDS HMPREF4655_20815 NC_017360.1 789503 790030 D hypothetical protein 789503..790030 Helicobacter pylori 35A 12349427 YP_005769926.1 CDS HMPREF4655_20818 NC_017360.1 791492 792781 R COG: COG5659; hypothetical protein complement(791492..792781) Helicobacter pylori 35A 12349429 YP_005769927.1 CDS HMPREF4655_20819 NC_017360.1 793036 793305 R hypothetical protein complement(793036..793305) Helicobacter pylori 35A 12349430 YP_005769928.1 CDS acnB NC_017360.1 793384 795945 R COG: COG1049; Pfam: PF06434, PF00330; InterPro: IPR004406; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(793384..795945) Helicobacter pylori 35A 12349431 YP_005769929.1 CDS HMPREF4655_20821 NC_017360.1 796080 796763 D COG: COG1427; Pfam: PF02621; InterPro: IPR003773; ACR protein 796080..796763 Helicobacter pylori 35A 12349432 YP_005769930.1 CDS pyrH NC_017360.1 796871 797593 D COG: COG0528; Pfam: PF00696; InterPro: IPR001048; UMP kinase 796871..797593 Helicobacter pylori 35A 12349433 YP_005769931.1 CDS rpoZ NC_017360.1 797636 797860 D COG: COG1758; Pfam: PF01192; InterPro: IPR006110; DNA-directed RNA polymerase subunit omega 797636..797860 Helicobacter pylori 35A 12349434 YP_005769932.1 CDS spoT NC_017360.1 797847 800174 D COG: COG0317; Pfam: PF01966, PF04607, PF02824; InterPro: IPR004811; penta-phosphate guanosine-3'-pyrophosphohydrolase 797847..800174 Helicobacter pylori 35A 12349435 YP_005769933.1 CDS tyrS NC_017360.1 800198 801406 D COG: COG0162; Pfam: PF00579, PF01479; InterPro: IPR002307; tyrosine--tRNA ligase 800198..801406 Helicobacter pylori 35A 12349436 YP_005769934.1 CDS HMPREF4655_20826 NC_017360.1 801417 802508 D COG: COG2070; Pfam: PF03060; InterPro: IPR004136; 2-nitropropane dioxygenase 801417..802508 Helicobacter pylori 35A 12349437 YP_005769935.1 CDS amiD NC_017360.1 802515 803822 D COG: COG0860; Pfam: PF01520; InterPro: IPR002508; N-acetylmuramoyl-L-alanine amidase 802515..803822 Helicobacter pylori 35A 12349438 YP_005769936.1 CDS HMPREF4655_20828 NC_017360.1 803841 804578 D hypothetical protein 803841..804578 Helicobacter pylori 35A 12349439 YP_005769937.1 CDS adhS NC_017360.1 805804 805926 D ABC superfamily ATP binding cassette transporter/periplasmic Mn/Zn-binding protein 805804..805926 Helicobacter pylori 35A 12349441 YP_005769938.1 CDS HMPREF4655_20834 NC_017360.1 807673 808113 D hypothetical protein 807673..808113 Helicobacter pylori 35A 12349443 YP_005769939.1 CDS pdsO NC_017360.1 808233 809063 D proteobacterial sortase system OmpA family protein 808233..809063 Helicobacter pylori 35A 12349444 YP_005769940.1 CDS HMPREF4655_20836 NC_017360.1 809082 809396 D Pfam: PF03692; InterPro: IPR005358; hypothetical protein 809082..809396 Helicobacter pylori 35A 12349445 YP_005769941.1 CDS ftsY NC_017360.1 809405 810298 R COG: COG0552; Pfam: PF00448; InterPro: IPR004390; cell division protein FtsY complement(809405..810298) Helicobacter pylori 35A 12349446 YP_005769942.1 CDS HMPREF4655_20838 NC_017360.1 810305 810862 R hypothetical protein complement(810305..810862) Helicobacter pylori 35A 12349447 YP_005769943.1 CDS HMPREF4655_20839 NC_017360.1 810987 811634 D Pfam: PF01812; InterPro: IPR002698; hypothetical protein 810987..811634 Helicobacter pylori 35A 12349448 YP_005769944.1 CDS ymdA NC_017360.1 811534 813123 D COG: COG1418; Pfam: PF00013, PF01966; InterPro: IPR003607; 2',3'-cyclic-nucleotide 2'-phosphodiesterase 811534..813123 Helicobacter pylori 35A 12349449 YP_005769945.1 CDS HMPREF4655_20841 NC_017360.1 813124 814377 R COG: COG0534; Pfam: PF01554; InterPro: IPR002528; multidrug efflux protein complement(813124..814377) Helicobacter pylori 35A 12349450 YP_005769946.1 CDS HMPREF4655_20842 NC_017360.1 814440 815753 R COG: COG2056; Pfam: PF03553; InterPro: IPR004770; Na+/H+ antiporter family protein complement(814440..815753) Helicobacter pylori 35A 12349451 YP_005769947.1 CDS cpa NC_017360.1 815880 816758 R COG: COG0388; Pfam: PF00795; InterPro: IPR003010; N-carbamoylputrescine amidase complement(815880..816758) Helicobacter pylori 35A 12349452 YP_005769948.1 CDS HMPREF4655_20844 NC_017360.1 816762 816947 R hypothetical protein complement(816762..816947) Helicobacter pylori 35A 12349453 YP_005769949.1 CDS moeB NC_017360.1 816937 817596 R COG: COG1179; Pfam: PF00899; InterPro: IPR016040; ThiF family protein complement(816937..817596) Helicobacter pylori 35A 12349454 YP_005769950.1 CDS HMPREF4655_20846 NC_017360.1 817649 817888 R hypothetical protein complement(817649..817888) Helicobacter pylori 35A 12349455 YP_005769951.1 CDS fliS NC_017360.1 817875 818255 R COG: COG1516; Pfam: PF02561; InterPro: IPR003713; flagellar protein FliS complement(817875..818255) Helicobacter pylori 35A 12349456 YP_005769952.1 CDS fliD NC_017360.1 818303 820360 R COG: COG1345; Pfam: PF02465, PF07196, PF07195; InterPro: IPR010809; flagellar hook-associated protein 2 complement(818303..820360) Helicobacter pylori 35A 12349457 YP_005769953.1 CDS flaG NC_017360.1 820377 820787 R COG: COG1334; Pfam: PF03646; InterPro: IPR005186; polar flagellin complement(820377..820787) Helicobacter pylori 35A 12349458 YP_005769954.1 CDS HMPREF4655_20850 NC_017360.1 820832 822034 R COG: COG0739; Pfam: PF01551; InterPro: IPR002886; hypothetical protein complement(820832..822034) Helicobacter pylori 35A 12349459 YP_005769955.1 CDS ftsX NC_017360.1 822027 822845 R cell division protein FtsX complement(822027..822845) Helicobacter pylori 35A 12349460 YP_005769956.1 CDS lolD NC_017360.1 822820 823491 R COG: COG1136; Pfam: PF00005; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC protein complement(822820..823491) Helicobacter pylori 35A 12349461 YP_005769957.1 CDS trmB NC_017360.1 823491 824669 R COG: COG0220; Pfam: PF02390; InterPro: IPR003358; tRNA (guanine-N(7)-)-methyltransferase complement(823491..824669) Helicobacter pylori 35A 12349462 YP_005769958.1 CDS HMPREF4655_20854 NC_017360.1 824680 825927 R COG: COG3401; Pfam: PF00041; hypothetical protein complement(824680..825927) Helicobacter pylori 35A 12349463 YP_005769959.1 CDS HMPREF4655_20855 NC_017360.1 825890 826873 R COG: COG0564; Pfam: PF01479, PF00849; InterPro: IPR006225; RluA family ribosomal large subunit pseudouridine synthase complement(825890..826873) Helicobacter pylori 35A 12349464 YP_005769960.1 CDS HMPREF4655_20856 NC_017360.1 827038 827292 D hypothetical protein 827038..827292 Helicobacter pylori 35A 12349465 YP_005769961.1 CDS HMPREF4655_20857 NC_017360.1 827289 828140 D hypothetical protein 827289..828140 Helicobacter pylori 35A 12349466 YP_005769962.1 CDS prs NC_017360.1 829448 830404 R COG: COG0462; Pfam: PF00156; InterPro: IPR005946; phosphoribosyl pyrophosphate synthetase complement(829448..830404) Helicobacter pylori 35A 12349468 YP_005769963.1 CDS HMPREF4655_20859 NC_017360.1 830469 830960 R COG: COG0537; Pfam: PF01230; InterPro: IPR011151; hit family protein complement(830469..830960) Helicobacter pylori 35A 12349469 YP_005769964.1 CDS murF NC_017360.1 830964 832445 R COG: COG0770; Pfam: PF08245; InterPro: IPR005863; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(830964..832445) Helicobacter pylori 35A 12349470 YP_005769965.1 CDS HMPREF4655_20861 NC_017360.1 832432 833157 R COG: COG0596; 2-hydroxy-6-oxohepta-2,4-dienoate hydrolase complement(832432..833157) Helicobacter pylori 35A 12349471 YP_005769966.1 CDS ddl NC_017360.1 833157 834227 R COG: COG1181; Pfam: PF01820, PF07478; InterPro: IPR005905; D-alanine--D-alanine ligase complement(833157..834227) Helicobacter pylori 35A 12349472 YP_005769967.1 CDS pgpA NC_017360.1 834278 834754 R COG: COG1267; Pfam: PF04608; InterPro: IPR007686; phosphatidylglycerophosphatase A complement(834278..834754) Helicobacter pylori 35A 12349473 YP_005769968.1 CDS serC NC_017360.1 834858 836012 D COG: COG0075; Pfam: PF00266; InterPro: IPR015421; phosphoserine transaminase 834858..836012 Helicobacter pylori 35A 12349474 YP_005769969.1 CDS gpt NC_017360.1 836021 836482 D COG: COG2236; Pfam: PF00156; xanthine guanine phosphoribosyl transferase 836021..836482 Helicobacter pylori 35A 12349475 YP_005769970.1 CDS HMPREF4655_20866 NC_017360.1 836484 837803 D COG: COG0621; Pfam: PF00919, PF04055; InterPro: IPR005840; 2-methylthioadenine synthetase 836484..837803 Helicobacter pylori 35A 12349476 YP_005769971.1 CDS HMPREF4655_20867 NC_017360.1 837781 837921 R hypothetical protein complement(837781..837921) Helicobacter pylori 35A 12349477 YP_005769972.1 CDS HMPREF4655_20875 NC_017360.1 840493 841347 D labile enterotoxin output A 840493..841347 Helicobacter pylori 35A 12349481 YP_005769973.1 CDS HMPREF4655_20876 NC_017360.1 841448 841756 D hypothetical protein 841448..841756 Helicobacter pylori 35A 12349482 YP_005769974.1 CDS HMPREF4655_20877 NC_017360.1 841765 842832 D ATP /GTP binding protein 841765..842832 Helicobacter pylori 35A 12349483 YP_005769975.1 CDS HMPREF4655_20878 NC_017360.1 842855 843886 D COG: COG0037; Pfam: PF01171; InterPro: IPR012795; tRNA(Ile)-lysidine synthase 842855..843886 Helicobacter pylori 35A 12349484 YP_005769976.1 CDS dusB NC_017360.1 843980 844966 D COG: COG0042; Pfam: PF01207; InterPro: IPR001269; tRNA-dihydrouridine synthase B 843980..844966 Helicobacter pylori 35A 12349485 YP_005769977.1 CDS HMPREF4655_20880 NC_017360.1 844936 845853 D Pfam: PF01856; outer membrane protein 844936..845853 Helicobacter pylori 35A 12349486 YP_005769978.1 CDS HMPREF4655_20881 NC_017360.1 846071 848020 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein SabA 846071..848020 Helicobacter pylori 35A 12349487 YP_005769979.1 CDS dcuA NC_017360.1 848096 849427 R COG: COG2704; Pfam: PF03605; InterPro: IPR004668; anaerobic C4-dicarboxylate membrane transporter DcuA complement(848096..849427) Helicobacter pylori 35A 12349488 YP_005769980.1 CDS ansB NC_017360.1 849503 850555 D COG: COG0252; Pfam: PF00710; InterPro: IPR004550; asparaginase 849503..850555 Helicobacter pylori 35A 12349489 YP_005769981.1 CDS HMPREF4655_20884 NC_017360.1 850620 851045 R hypothetical protein complement(850620..851045) Helicobacter pylori 35A 12349490 YP_005769982.1 CDS HMPREF4655_20885 NC_017360.1 851196 851666 R Pfam: PF06518; InterPro: IPR009488; hypothetical protein complement(851196..851666) Helicobacter pylori 35A 12349491 YP_005769983.1 CDS HMPREF4655_20886 NC_017360.1 851695 852117 R Pfam: PF06518; InterPro: IPR009488; hypothetical protein complement(851695..852117) Helicobacter pylori 35A 12349492 YP_005769984.1 CDS HMPREF4655_20887 NC_017360.1 852388 853020 D COG: COG1279; Pfam: PF01810; InterPro: IPR001123; LysE family L-lysine exporter 852388..853020 Helicobacter pylori 35A 12349493 YP_005769985.1 CDS dnaX NC_017360.1 853089 854768 D COG: COG2812; Pfam: PF00004; InterPro: IPR012763; DNA polymerase III subunit gamma/tau DnaX 853089..854768 Helicobacter pylori 35A 12349494 YP_005769986.1 CDS HMPREF4655_20889 NC_017360.1 854765 855166 D COG: COG0802; Pfam: PF02367; InterPro: IPR003442; hypothetical protein 854765..855166 Helicobacter pylori 35A 12349495 YP_005769987.1 CDS HMPREF4655_20890 NC_017360.1 855179 855901 D COG: COG1137; Pfam: PF00005; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC protein 855179..855901 Helicobacter pylori 35A 12349496 YP_005769988.1 CDS HMPREF4655_20891 NC_017360.1 855904 857148 D COG: COG1508; Pfam: PF00309, PF04963, PF04552; InterPro: IPR000394; RNA polymerase factor sigma-54 855904..857148 Helicobacter pylori 35A 12349497 YP_005769989.1 CDS HMPREF4655_20892 NC_017360.1 857226 857369 R hypothetical protein complement(857226..857369) Helicobacter pylori 35A 12349498 YP_005769990.1 CDS HMPREF4655_20893 NC_017360.1 857546 858460 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 857546..858460 Helicobacter pylori 35A 12349499 YP_005769991.1 CDS HMPREF4655_20894 NC_017360.1 858568 859788 R COG: COG1896; hypothetical protein complement(858568..859788) Helicobacter pylori 35A 12349500 YP_005769992.1 CDS HMPREF4655_20895 NC_017360.1 860265 861167 R COG: COG1912; Pfam: PF01887; InterPro: IPR002747; hypothetical protein DUF62 complement(860265..861167) Helicobacter pylori 35A 12349501 YP_005769993.1 CDS HMPREF4655_20896 NC_017360.1 861412 861756 R hypothetical protein complement(861412..861756) Helicobacter pylori 35A 12349502 YP_005769994.1 CDS mraW NC_017360.1 861776 862702 R COG: COG0275; Pfam: PF01795; InterPro: IPR002903; S-adenosyl-methyltransferase MraW complement(861776..862702) Helicobacter pylori 35A 12349503 YP_005769995.1 CDS hopE NC_017360.1 862896 863717 R Pfam: PF01856; InterPro: IPR002718; HOP family outer membrane porin complement(862896..863717) Helicobacter pylori 35A 12349504 YP_005769996.1 CDS uvrA NC_017360.1 863892 866717 D COG: COG0178; Pfam: PF00005; InterPro: IPR004602; excision endonuclease subunit UvrA 863892..866717 Helicobacter pylori 35A 12349505 YP_005769997.1 CDS fleR NC_017360.1 867038 868183 R COG: COG2204; Pfam: PF00072, PF00158; InterPro: IPR002078; sigma-54 dependent DNA-binding response regulator complement(867038..868183) Helicobacter pylori 35A 12349506 YP_005769998.1 CDS HMPREF4655_20901 NC_017360.1 868180 868653 R hypothetical protein complement(868180..868653) Helicobacter pylori 35A 12349507 YP_005769999.1 CDS gyrA NC_017360.1 868653 871139 R COG: COG0188; Pfam: PF00521, PF03989; InterPro: IPR005743; DNA topoisomerase subunit A complement(868653..871139) Helicobacter pylori 35A 12349508 YP_005770000.1 CDS dgkA NC_017360.1 871159 871545 R COG: COG0818; Pfam: PF01219; InterPro: IPR000829; diacylglycerol kinase complement(871159..871545) Helicobacter pylori 35A 12349509 YP_005770001.1 CDS HMPREF4655_20904 NC_017360.1 871538 872551 R hypothetical protein complement(871538..872551) Helicobacter pylori 35A 12349510 YP_005770002.1 CDS acxC NC_017360.1 872874 873401 R COG: COG4647; Pfam: PF08882; InterPro: IPR014979; acetone carboxylase subunit gamma complement(872874..873401) Helicobacter pylori 35A 12349511 YP_005770003.1 CDS HMPREF4655_20906 NC_017360.1 873391 875688 R COG: COG0146; Pfam: PF02538; InterPro: IPR003692; N-methylhydantoinase complement(873391..875688) Helicobacter pylori 35A 12349512 YP_005770004.1 CDS hyuA NC_017360.1 875700 877841 R COG: COG0145; Pfam: PF05378, PF01968; InterPro: IPR002821; hydantoin utilization protein A complement(875700..877841) Helicobacter pylori 35A 12349513 YP_005770005.1 CDS HMPREF4655_20908 NC_017360.1 878048 879049 R COG: COG3528; outer membrane protein complement(878048..879049) Helicobacter pylori 35A 12349514 YP_005770006.1 CDS atoE NC_017360.1 879174 880538 R COG: COG2031; Pfam: PF02667; InterPro: IPR006160; short-chain fatty acids transporter complement(879174..880538) Helicobacter pylori 35A 12349515 YP_005770007.1 CDS scoB NC_017360.1 880557 881180 R COG: COG2057; Pfam: PF01144; InterPro: IPR004165; 3-oxoacid CoA-transferase complement(880557..881180) Helicobacter pylori 35A 12349516 YP_005770008.1 CDS scoA NC_017360.1 881177 881875 R COG: COG1788; Pfam: PF01144; InterPro: IPR012792; 3-oxoacid CoA-transferase complement(881177..881875) Helicobacter pylori 35A 12349517 YP_005770009.1 CDS thlA NC_017360.1 881886 883088 R COG: COG0183; Pfam: PF00108, PF02803; InterPro: IPR002155; acetyl-CoA C-acetyltransferase complement(881886..883088) Helicobacter pylori 35A 12349518 YP_005770010.1 CDS wlaX NC_017360.1 883328 884140 R COG: COG3298; polysaccharide biosynthesis protein complement(883328..884140) Helicobacter pylori 35A 12347959 YP_005770011.1 CDS feoB NC_017360.1 884271 886205 D COG: COG0370; Pfam: PF01926, PF02421, PF07670, PF07664; InterPro: IPR003373; FeoB family ferrous iron (Fe2+) uptake protein 884271..886205 Helicobacter pylori 35A 12347960 YP_005770012.1 CDS fecA4 NC_017360.1 886460 888763 D COG: COG4772; Pfam: PF07715, PF00593; InterPro: IPR000531; iron(III) dicitrate transporter 886460..888763 Helicobacter pylori 35A 12347961 YP_005770013.1 CDS fliP NC_017360.1 888802 889548 R COG: COG1338; Pfam: PF00813; InterPro: IPR005837; flagellar biosynthetic protein FliP complement(888802..889548) Helicobacter pylori 35A 12347962 YP_005770014.1 CDS glmU NC_017360.1 889600 890937 D COG: COG1207; Pfam: PF01128, PF00132; InterPro: IPR005882; UDP-N-acetylglucosamine diphosphorylase 889600..890937 Helicobacter pylori 35A 12347963 YP_005770015.1 CDS HMPREF4655_20918 NC_017360.1 891154 891489 D hypothetical protein 891154..891489 Helicobacter pylori 35A 12347964 YP_005770016.1 CDS HMPREF4655_20919 NC_017360.1 891496 892047 D hypothetical protein 891496..892047 Helicobacter pylori 35A 12347965 YP_005770017.1 CDS nrdA NC_017360.1 892214 894580 D COG: COG0209; Pfam: PF03477, PF00317, PF02867; InterPro: IPR013346; ribonucleotide-diphosphate reductase subunit alpha 892214..894580 Helicobacter pylori 35A 12347966 YP_005770018.1 CDS wbpB NC_017360.1 894642 895589 D COG: COG0673; Pfam: PF01408, PF02894; InterPro: IPR016040; gfo/Idh/MocA family oxidoreductase 894642..895589 Helicobacter pylori 35A 12347967 YP_005770019.1 CDS HMPREF4655_20922 NC_017360.1 895703 896470 D COG: COG0730; Pfam: PF01925; InterPro: IPR002781; hypothetical protein 895703..896470 Helicobacter pylori 35A 12347968 YP_005770020.1 CDS dat NC_017360.1 896474 896980 D COG: COG0350; Pfam: PF02870, PF01035; InterPro: IPR014048; methylated-DNA--protein-cysteine methyltransferase 896474..896980 Helicobacter pylori 35A 12347969 YP_005770021.1 CDS xerC NC_017360.1 897043 898110 R COG: COG0582; Pfam: PF00589; InterPro: IPR013762; tyrosine recombinase XerC complement(897043..898110) Helicobacter pylori 35A 12347970 YP_005770022.1 CDS HMPREF4655_20925 NC_017360.1 898117 898929 R hypothetical protein complement(898117..898929) Helicobacter pylori 35A 12347971 YP_005770023.1 CDS aspC NC_017360.1 899196 900368 R COG: COG0436; Pfam: PF00155; InterPro: IPR004839; aspartate transaminase complement(899196..900368) Helicobacter pylori 35A 12347972 YP_005770024.1 CDS HMPREF4655_20927 NC_017360.1 900527 901339 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(900527..901339) Helicobacter pylori 35A 12347973 YP_005770025.1 CDS HMPREF4655_20928 NC_017360.1 901461 902771 R hypothetical protein complement(901461..902771) Helicobacter pylori 35A 12347974 YP_005770026.1 CDS HMPREF4655_20933 NC_017360.1 905771 907591 R COG: COG4889; Pfam: PF04471, PF04851; InterPro: IPR014001; helicase domain-containing protein complement(905771..907591) Helicobacter pylori 35A 12347976 YP_005770027.1 CDS HMPREF4655_20934 NC_017360.1 907667 908956 R COG: COG0247; Pfam: PF00037, PF02754; InterPro: IPR004017; iron-sulfur cluster-binding domain protein complement(907667..908956) Helicobacter pylori 35A 12347977 YP_005770028.1 CDS hemN NC_017360.1 908953 910326 R COG: COG0635; Pfam: PF04055, PF06969; InterPro: IPR004558; coproporphyrinogen dehydrogenase complement(908953..910326) Helicobacter pylori 35A 12347978 YP_005770029.1 CDS HMPREF4655_20936 NC_017360.1 910326 910841 R hypothetical protein complement(910326..910841) Helicobacter pylori 35A 12347979 YP_005770030.1 CDS aroC NC_017360.1 910879 911976 R COG: COG0082; Pfam: PF01264; InterPro: IPR000453; chorismate synthase complement(910879..911976) Helicobacter pylori 35A 12347980 YP_005770031.1 CDS rnc NC_017360.1 911973 912689 R COG: COG0571; Pfam: PF00636, PF00035; InterPro: IPR011907; ribonuclease III complement(911973..912689) Helicobacter pylori 35A 12347981 YP_005770032.1 CDS rnhA NC_017360.1 912664 913128 R COG: COG0328; Pfam: PF00075; InterPro: IPR002156; ribonuclease H complement(912664..913128) Helicobacter pylori 35A 12347982 YP_005770033.1 CDS HMPREF4655_20940 NC_017360.1 913129 914136 R hypothetical protein complement(913129..914136) Helicobacter pylori 35A 12347983 YP_005770034.1 CDS HMPREF4655_20941 NC_017360.1 914147 915364 R Pfam: PF09312; SurA domain-containing protein complement(914147..915364) Helicobacter pylori 35A 12347984 YP_005770035.1 CDS gatB NC_017360.1 915364 916788 R COG: COG0064; Pfam: PF02934, PF01162, PF02637; InterPro: IPR004413; glutamyl-tRNA(Gln) amidotransferase subunit B complement(915364..916788) Helicobacter pylori 35A 12347985 YP_005770036.1 CDS ymxG NC_017360.1 916788 918092 R COG: COG0612; Pfam: PF00675, PF05193; InterPro: IPR011237; processing protease complement(916788..918092) Helicobacter pylori 35A 12347986 YP_005770037.1 CDS HMPREF4655_20944 NC_017360.1 918089 919180 R COG: COG1060; Pfam: PF04055; InterPro: IPR005244; SCO4550 family menaquinone biosynthesis protein complement(918089..919180) Helicobacter pylori 35A 12347987 YP_005770038.1 CDS yaeT NC_017360.1 919152 921782 R COG: COG4775; Pfam: PF07244, PF01103; InterPro: IPR000184; outer membrane protein assembly complex complement(919152..921782) Helicobacter pylori 35A 12347988 YP_005770039.1 CDS HMPREF4655_20946 NC_017360.1 921955 923079 R COG: COG1060; Pfam: PF04055; InterPro: IPR005244; SCO4494 family menaquinone biosynthesis protein complement(921955..923079) Helicobacter pylori 35A 12347989 YP_005770040.1 CDS ftnA NC_017360.1 923333 923836 D COG: COG1528; Pfam: PF00210; InterPro: IPR012347; ferroxidase 923333..923836 Helicobacter pylori 35A 12347990 YP_005770041.1 CDS pspH NC_017360.1 923852 924475 D COG: COG0560; Pfam: PF00702; InterPro: IPR004469; phosphoserine phosphatase 923852..924475 Helicobacter pylori 35A 12347991 YP_005770042.1 CDS HMPREF4655_20949 NC_017360.1 924515 925840 D InterPro: IPR001503; alpha-1,3/4-fucosyltransferase 924515..925840 Helicobacter pylori 35A 12347992 YP_005770043.1 CDS HMPREF4655_20950 NC_017360.1 925849 926487 R Pfam: PF03167; family 4 uracil-DNA glycosylase complement(925849..926487) Helicobacter pylori 35A 12347993 YP_005770044.1 CDS aspA NC_017360.1 926484 927890 R COG: COG1027; Pfam: PF00206; InterPro: IPR004708; aspartate ammonia-lyase complement(926484..927890) Helicobacter pylori 35A 12347994 YP_005770045.1 CDS murA NC_017360.1 927948 929216 R COG: COG0766; Pfam: PF00275; InterPro: IPR005750; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(927948..929216) Helicobacter pylori 35A 12347995 YP_005770046.1 CDS HMPREF4655_20953 NC_017360.1 929219 929626 R hypothetical protein complement(929219..929626) Helicobacter pylori 35A 12347996 YP_005770047.1 CDS galU NC_017360.1 929638 930459 R COG: COG1210; Pfam: PF00483; InterPro: IPR005835; UTP--glucose-1-phosphate uridylyltransferase complement(929638..930459) Helicobacter pylori 35A 12347997 YP_005770048.1 CDS slt NC_017360.1 930456 932138 R COG: COG0741; Pfam: PF01464; InterPro: IPR008258; soluble lytic murein transglycosylase complement(930456..932138) Helicobacter pylori 35A 12347998 YP_005770049.1 CDS HMPREF4655_20956 NC_017360.1 932147 932440 R COG: COG0762; Pfam: PF02325; InterPro: IPR003425; yggt family protein complement(932147..932440) Helicobacter pylori 35A 12347999 YP_005770050.1 CDS gltX NC_017360.1 932437 933756 R COG: COG0008; Pfam: PF00749; InterPro: IPR004527; glutamate--tRNA ligase complement(932437..933756) Helicobacter pylori 35A 12348000 YP_005770051.1 CDS frp NC_017360.1 933909 934562 R COG: COG0778; Pfam: PF00881; InterPro: IPR000415; NAD(P)H-flavin oxidoreductase complement(933909..934562) Helicobacter pylori 35A 12348001 YP_005770052.1 CDS papS NC_017360.1 934678 935901 R COG: COG0617; Pfam: PF01743; InterPro: IPR002646; poly(A) polymerase complement(934678..935901) Helicobacter pylori 35A 12348002 YP_005770053.1 CDS exsB NC_017360.1 935963 936643 D COG: COG0603; Pfam: PF06508; InterPro: IPR004479; transcription regulator ExsB 935963..936643 Helicobacter pylori 35A 12348003 YP_005770054.1 CDS HMPREF4655_20961 NC_017360.1 936700 937614 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(936700..937614) Helicobacter pylori 35A 12348004 YP_005770055.1 CDS HMPREF4655_20962 NC_017360.1 937791 938243 D hypothetical protein 937791..938243 Helicobacter pylori 35A 12348005 YP_005770056.1 CDS HMPREF4655_20963 NC_017360.1 938369 938794 D hypothetical protein 938369..938794 Helicobacter pylori 35A 12348006 YP_005770057.1 CDS HMPREF4655_20964 NC_017360.1 938799 940337 R hypothetical protein complement(938799..940337) Helicobacter pylori 35A 12348007 YP_005770058.1 CDS hybD NC_017360.1 940339 940875 R COG: COG0680; Pfam: PF01750; InterPro: IPR000671; hydrogenase expression/formation protein complement(940339..940875) Helicobacter pylori 35A 12348008 YP_005770059.1 CDS cybH NC_017360.1 940872 941546 R COG: COG1969; Pfam: PF01292; InterPro: IPR000516; Ni/Fe-hydrogenase complement(940872..941546) Helicobacter pylori 35A 12348009 YP_005770060.1 CDS hydB NC_017360.1 941559 943295 R COG: COG0374; Pfam: PF00374; InterPro: IPR001501; quinone-reactive Ni/Fe hydrogenase HydB complement(941559..943295) Helicobacter pylori 35A 12348010 YP_005770061.1 CDS hydA NC_017360.1 943312 944466 R COG: COG1740; Pfam: PF08425, PF01058; InterPro: IPR001821; hydrogenase (NiFe) small subunit HydA complement(943312..944466) Helicobacter pylori 35A 12348011 YP_005770062.1 CDS mdaB NC_017360.1 944602 945186 D COG: COG2249; Pfam: PF02525; InterPro: IPR003680; NAD(P)H quinone dehydrogenase MdaB 944602..945186 Helicobacter pylori 35A 12348012 YP_005770063.1 CDS HMPREF4655_20972 NC_017360.1 947403 948461 R COG: COG0790; Pfam: PF08238; InterPro: IPR011990; hypothetical protein complement(947403..948461) Helicobacter pylori 35A 12348014 YP_005770064.1 CDS dapD NC_017360.1 948473 949678 R COG: COG2171; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase complement(948473..949678) Helicobacter pylori 35A 12348015 YP_005770065.1 CDS ispG NC_017360.1 949681 950760 R COG: COG0821; Pfam: PF04551; InterPro: IPR004588; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase complement(949681..950760) Helicobacter pylori 35A 12348016 YP_005770066.1 CDS aspB NC_017360.1 950915 952042 D COG: COG0436; Pfam: PF00155; InterPro: IPR004839; N-succinyldiaminopimelate aminotransferase 950915..952042 Helicobacter pylori 35A 12348017 YP_005770067.1 CDS murC NC_017360.1 952035 953384 D COG: COG0773; Pfam: PF01225, PF08245, PF02875; InterPro: IPR005758; UDP-N-acetylmuramate--L-alanine ligase 952035..953384 Helicobacter pylori 35A 12348018 YP_005770068.1 CDS HMPREF4655_20977 NC_017360.1 953384 953749 D hypothetical protein 953384..953749 Helicobacter pylori 35A 12348019 YP_005770069.1 CDS mutS NC_017360.1 953768 956023 D COG: COG1193; Pfam: PF00488, PF01713; InterPro: IPR005747; DNA mismatch repair protein 953768..956023 Helicobacter pylori 35A 12348020 YP_005770070.1 CDS ppa NC_017360.1 956166 956687 R COG: COG0221; Pfam: PF00719; InterPro: IPR008162; inorganic diphosphatase complement(956166..956687) Helicobacter pylori 35A 12348021 YP_005770071.1 CDS HMPREF4655_20982 NC_017360.1 958144 959142 R COG: COG3306; Pfam: PF01755; InterPro: IPR002654; glycosyltransferase complement(958144..959142) Helicobacter pylori 35A 12348023 YP_005770072.1 CDS adk NC_017360.1 959167 959742 R COG: COG0563; Pfam: PF00406; InterPro: IPR000850; adenylate kinase complement(959167..959742) Helicobacter pylori 35A 12348024 YP_005770073.1 CDS aspS NC_017360.1 959759 961492 R COG: COG0173; Pfam: PF01336, PF00152, PF02938; InterPro: IPR004524; aspartate--tRNA ligase complement(959759..961492) Helicobacter pylori 35A 12348025 YP_005770074.1 CDS cheV2 NC_017360.1 961527 962468 R COG: COG0835; Pfam: PF01584, PF00072; InterPro: IPR002545; chemotaxis protein complement(961527..962468) Helicobacter pylori 35A 12348026 YP_005770075.1 CDS ligA NC_017360.1 962546 964516 D COG: COG0272; Pfam: PF01653, PF03120, PF03119, PF00533; InterPro: IPR001679; NAD-dependent DNA ligase LigA 962546..964516 Helicobacter pylori 35A 12348027 YP_005770076.1 CDS HMPREF4655_20987 NC_017360.1 964617 964949 D hypothetical protein 964617..964949 Helicobacter pylori 35A 12348028 YP_005770077.1 CDS HMPREF4655_20990 NC_017360.1 965910 966149 D ABC transporter ATP-binding protein 965910..966149 Helicobacter pylori 35A 12348030 YP_005770078.1 CDS HMPREF4655_20991 NC_017360.1 966166 966567 D ABC transporter ATP-binding protein 966166..966567 Helicobacter pylori 35A 12348031 YP_005770079.1 CDS vacA NC_017360.1 966725 976297 R COG: COG5651; Pfam: PF03077, PF03797; InterPro: IPR005546; vacuolating cytotoxin (VacA) family protein complement(966725..976297) Helicobacter pylori 35A 12348032 YP_005770080.1 CDS HMPREF4655_20993 NC_017360.1 976429 976998 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(976429..976998) Helicobacter pylori 35A 12348033 YP_005770081.1 CDS hefC NC_017360.1 976995 980075 R COG: COG0841; Pfam: PF00873; InterPro: IPR001036; cytoplasmic pump protein of the hefABC efflux system HefC complement(976995..980075) Helicobacter pylori 35A 12348034 YP_005770082.1 CDS hefB NC_017360.1 980088 980813 R COG: COG0845; membrane fusion protein of the hefABC efflux system HefB complement(980088..980813) Helicobacter pylori 35A 12348035 YP_005770083.1 CDS hefA NC_017360.1 980803 982281 R COG: COG1538; Pfam: PF02321; InterPro: IPR003423; outer-membrane protein of the hefABC efflux system HefA complement(980803..982281) Helicobacter pylori 35A 12348036 YP_005770084.1 CDS hemE NC_017360.1 982262 983284 R COG: COG0407; Pfam: PF01208; InterPro: IPR006361; uroporphyrinogen decarboxylase complement(982262..983284) Helicobacter pylori 35A 12348037 YP_005770085.1 CDS HMPREF4655_20998 NC_017360.1 983404 984021 R hypothetical protein complement(983404..984021) Helicobacter pylori 35A 12348038 YP_005770086.1 CDS magIII NC_017360.1 984018 984674 R COG: COG2231; Pfam: PF00730, PF00633; InterPro: IPR003265; 3-methyladenine DNA glycosylase complement(984018..984674) Helicobacter pylori 35A 12348039 YP_005770087.1 CDS flaA NC_017360.1 984792 986324 R COG: COG1344; Pfam: PF00669, PF07196, PF00700; InterPro: IPR001492; flagellin A complement(984792..986324) Helicobacter pylori 35A 12348040 YP_005770088.1 CDS spaB NC_017360.1 986689 987282 D COG: COG1132; Pfam: PF00005; InterPro: IPR003439; ABC transporter ATP-binding protein 986689..987282 Helicobacter pylori 35A 12348041 YP_005770089.1 CDS hylB NC_017360.1 987354 988655 D COG: COG0840; Pfam: PF00015; InterPro: IPR004089; hemolysin secretion protein 987354..988655 Helicobacter pylori 35A 12348042 YP_005770090.1 CDS bioF NC_017360.1 988678 989799 D COG: COG0156; Pfam: PF00155; InterPro: IPR015421; 8-amino-7-oxononanoate synthase 988678..989799 Helicobacter pylori 35A 12348043 YP_005770091.1 CDS pbpA NC_017360.1 989800 991779 D COG: COG0744; Pfam: PF00912, PF00905; InterPro: IPR011816; penicillin-binding protein 1A 989800..991779 Helicobacter pylori 35A 12348044 YP_005770092.1 CDS HMPREF4655_21005 NC_017360.1 991782 992420 R tumor necrosis factor alpha-inducing protein complement(991782..992420) Helicobacter pylori 35A 12348045 YP_005770093.1 CDS HMPREF4655_21006 NC_017360.1 992836 994305 R COG: COG1495; Pfam: PF02600; InterPro: IPR003752; DsbB family protein complement(992836..994305) Helicobacter pylori 35A 12348047 YP_005770094.1 CDS HMPREF4655_21007 NC_017360.1 994314 994478 R hypothetical protein complement(994314..994478) Helicobacter pylori 35A 12348048 YP_005770095.1 CDS HMPREF4655_21008 NC_017360.1 994633 996411 R COG: COG5610; Pfam: PF00702; JHP540 family protein complement(994633..996411) Helicobacter pylori 35A 12348049 YP_005770096.1 CDS oorC NC_017360.1 996523 997077 R COG: COG1014; Pfam: PF01558; InterPro: IPR002869; 2-oxoglutarate:acceptor oxidoreductase complement(996523..997077) Helicobacter pylori 35A 12348050 YP_005770097.1 CDS oorB NC_017360.1 997077 997898 R COG: COG1013; Pfam: PF02775; InterPro: IPR011766; 2-oxoglutarate:acceptor oxidoreductase complement(997077..997898) Helicobacter pylori 35A 12348051 YP_005770098.1 CDS oorA NC_017360.1 997900 999027 R COG: COG0674; Pfam: PF01855; InterPro: IPR002880; 2-oxoglutarate:acceptor oxidoreductase complement(997900..999027) Helicobacter pylori 35A 12348052 YP_005770099.1 CDS oorD NC_017360.1 999027 999368 R COG: COG1146; Pfam: PF00037; 2-oxoglutarate-acceptor oxidoreductase subunit OorD complement(999027..999368) Helicobacter pylori 35A 12348053 YP_005770100.1 CDS pabC NC_017360.1 999546 1000484 R COG: COG1559; Pfam: PF02618; InterPro: IPR003770; aminodeoxychorismate lyase complement(999546..1000484) Helicobacter pylori 35A 12348054 YP_005770101.1 CDS HMPREF4655_21014 NC_017360.1 1000459 1003392 D hypothetical protein 1000459..1003392 Helicobacter pylori 35A 12348055 YP_005770102.1 CDS feoA NC_017360.1 1003355 1003624 D Pfam: PF04023; InterPro: IPR007167; ferrous iron transport protein A 1003355..1003624 Helicobacter pylori 35A 12348056 YP_005770103.1 CDS nth NC_017360.1 1003621 1004277 D COG: COG0177; Pfam: PF00730, PF00633; InterPro: IPR005759; DNA-(apurinic or apyrimidinic site) lyase 1003621..1004277 Helicobacter pylori 35A 12348057 YP_005770104.1 CDS fliN NC_017360.1 1004359 1004730 D COG: COG1886; Pfam: PF01052; InterPro: IPR012826; flagellar switch protein 1004359..1004730 Helicobacter pylori 35A 12348058 YP_005770105.1 CDS HMPREF4655_21018 NC_017360.1 1004727 1005602 D hypothetical protein 1004727..1005602 Helicobacter pylori 35A 12348059 YP_005770106.1 CDS HMPREF4655_21019 NC_017360.1 1005586 1006548 D COG: COG0810; InterPro: IPR006260; siderophore-mediated iron transport protein 1005586..1006548 Helicobacter pylori 35A 12348060 YP_005770107.1 CDS pyrC2 NC_017360.1 1006552 1007571 D COG: COG0418; InterPro: IPR004721; dihydroorotase 1006552..1007571 Helicobacter pylori 35A 12348061 YP_005770108.1 CDS HMPREF4655_21021 NC_017360.1 1007547 1008665 D hypothetical protein 1007547..1008665 Helicobacter pylori 35A 12348062 YP_005770109.1 CDS HMPREF4655_21022 NC_017360.1 1008753 1009226 D hypothetical protein 1008753..1009226 Helicobacter pylori 35A 12348063 YP_005770110.1 CDS HMPREF4655_21023 NC_017360.1 1009232 1011262 D Pfam: PF00884; InterPro: IPR000917; hypothetical protein 1009232..1011262 Helicobacter pylori 35A 12348064 YP_005770111.1 CDS folD NC_017360.1 1011334 1012227 D COG: COG0190; Pfam: PF00763, PF02882; InterPro: IPR000672; bifunctional methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase 1011334..1012227 Helicobacter pylori 35A 12348065 YP_005770112.1 CDS lepB NC_017360.1 1012227 1013099 D COG: COG0681; Pfam: PF00717; InterPro: IPR000223; signal peptidase I LepB 1012227..1013099 Helicobacter pylori 35A 12348066 YP_005770113.1 CDS HMPREF4655_21026 NC_017360.1 1013108 1013806 D COG: COG1994; Pfam: PF02163; InterPro: IPR008915; peptidase M50 1013108..1013806 Helicobacter pylori 35A 12348067 YP_005770114.1 CDS rpiB NC_017360.1 1013827 1014282 D COG: COG0698; Pfam: PF02502; InterPro: IPR003500; ribose 5-phosphate isomerase B 1013827..1014282 Helicobacter pylori 35A 12348068 YP_005770115.1 CDS HMPREF4655_21028 NC_017360.1 1014334 1014666 D similar to Cj0926; membrane protein 1014334..1014666 Helicobacter pylori 35A 12348069 YP_005770116.1 CDS apt NC_017360.1 1014724 1015263 D COG: COG0503; Pfam: PF00156; InterPro: IPR005764; adenine phosphoribosyltransferase 1014724..1015263 Helicobacter pylori 35A 12348070 YP_005770117.1 CDS HMPREF4655_21030 NC_017360.1 1015278 1015856 D COG: COG0586; Pfam: PF09335; DedA family protein 1015278..1015856 Helicobacter pylori 35A 12348071 YP_005770118.1 CDS pepA NC_017360.1 1015904 1017394 D COG: COG0260; Pfam: PF02789, PF00883; InterPro: IPR011356; leucyl aminopeptidase 1015904..1017394 Helicobacter pylori 35A 12348072 YP_005770119.1 CDS ychF NC_017360.1 1017396 1018496 D COG: COG0012; Pfam: PF01926, PF06071; InterPro: IPR004396; GTP-binding protein YchF 1017396..1018496 Helicobacter pylori 35A 12348073 YP_005770120.1 CDS HMPREF4655_21033 NC_017360.1 1018530 1019402 D Pfam: PF04055; radical SAM protein 1018530..1019402 Helicobacter pylori 35A 12348074 YP_005770121.1 CDS HMPREF4655_21034 NC_017360.1 1019532 1020578 R COG: COG0628; Pfam: PF01594; InterPro: IPR002549; membrane protein complement(1019532..1020578) Helicobacter pylori 35A 12348075 YP_005770122.1 CDS dapF NC_017360.1 1020694 1021515 D COG: COG0253; Pfam: PF01678; InterPro: IPR001653; diaminopimelate epimerase 1020694..1021515 Helicobacter pylori 35A 12348076 YP_005770123.1 CDS HMPREF4655_21036 NC_017360.1 1021606 1022253 D COG: COG3059; Pfam: PF04224; InterPro: IPR007339; hypothetical protein 1021606..1022253 Helicobacter pylori 35A 12348077 YP_005770124.1 CDS HMPREF4655_21037 NC_017360.1 1022277 1022522 R hypothetical protein complement(1022277..1022522) Helicobacter pylori 35A 12348078 YP_005770125.1 CDS HMPREF4655_21038 NC_017360.1 1022695 1023945 D hypothetical protein 1022695..1023945 Helicobacter pylori 35A 12348079 YP_005770126.1 CDS rpsU NC_017360.1 1024005 1024259 D COG: COG0828; Pfam: PF01165; InterPro: IPR001911; 30S ribosomal protein S21 1024005..1024259 Helicobacter pylori 35A 12348080 YP_005770127.1 CDS fabG NC_017360.1 1024296 1025039 D COG: COG1028; Pfam: PF00106; InterPro: IPR016040; 3-oxoacyl-ACP reductase 1024296..1025039 Helicobacter pylori 35A 12348081 YP_005770128.1 CDS acpP NC_017360.1 1025270 1025506 D COG: COG0236; Pfam: PF00550; InterPro: IPR003231; acyl carrier protein 1025270..1025506 Helicobacter pylori 35A 12348082 YP_005770129.1 CDS fabF NC_017360.1 1025832 1027046 D COG: COG0304; Pfam: PF00109, PF02801; InterPro: IPR000794; 3-oxoacyl-(acyl-carrier-protein) synthase II 1025832..1027046 Helicobacter pylori 35A 12348083 YP_005770130.1 CDS accA NC_017360.1 1027069 1028007 D COG: COG0825; Pfam: PF03255, PF01039; InterPro: IPR001095; acetyl-coA carboxylase carboxyl transferase subunit alpha 1027069..1028007 Helicobacter pylori 35A 12348084 YP_005770131.1 CDS HMPREF4655_21044 NC_017360.1 1028087 1028266 R hypothetical protein complement(1028087..1028266) Helicobacter pylori 35A 12348085 YP_005770132.1 CDS HMPREF4655_21045 NC_017360.1 1028475 1028912 D hypothetical protein 1028475..1028912 Helicobacter pylori 35A 12348086 YP_005770133.1 CDS HMPREF4655_21046 NC_017360.1 1028983 1029804 R hypothetical protein complement(1028983..1029804) Helicobacter pylori 35A 12348087 YP_005770134.1 CDS HMPREF4655_21047 NC_017360.1 1029801 1030766 R hypothetical protein complement(1029801..1030766) Helicobacter pylori 35A 12348088 YP_005770135.1 CDS HMPREF4655_21048 NC_017360.1 1030779 1031462 R COG: COG0566; Pfam: PF08032, PF00588; InterPro: IPR004441; RNA methyltransferase complement(1030779..1031462) Helicobacter pylori 35A 12348089 YP_005770136.1 CDS HMPREF4655_21049 NC_017360.1 1031475 1032338 R COG: COG0313; Pfam: PF00590; InterPro: IPR008189; tetrapyrrole methylase complement(1031475..1032338) Helicobacter pylori 35A 12348090 YP_005770137.1 CDS rpmE NC_017360.1 1032363 1032566 R COG: COG0254; Pfam: PF01197; InterPro: IPR002150; 50S ribosomal protein L31 complement(1032363..1032566) Helicobacter pylori 35A 12348091 YP_005770138.1 CDS rho NC_017360.1 1032831 1034147 D COG: COG1158; Pfam: PF07498, PF07497, PF00006; InterPro: IPR004665; transcription termination factor Rho 1032831..1034147 Helicobacter pylori 35A 12348092 YP_005770139.1 CDS murI NC_017360.1 1034183 1034950 D COG: COG0796; Pfam: PF01177; InterPro: IPR004391; glutamate racemase 1034183..1034950 Helicobacter pylori 35A 12348093 YP_005770140.1 CDS tnpB NC_017360.1 1035074 1035358 D Pfam: PF07282; InterPro: IPR010095; transposase 1035074..1035358 Helicobacter pylori 35A 12348094 YP_005770141.1 CDS cagA NC_017360.1 1035429 1038959 R Pfam: PF03507; InterPro: IPR005169; cytotoxicity-associated immunodominant antigen A complement(1035429..1038959) Helicobacter pylori 35A 12348095 YP_005770142.1 CDS cagB NC_017360.1 1039211 1039438 D cag pathogenicity island protein (cagB) 1039211..1039438 Helicobacter pylori 35A 12348096 YP_005770143.1 CDS cagC NC_017360.1 1039605 1039952 D cag island protein 1039605..1039952 Helicobacter pylori 35A 12348097 YP_005770144.1 CDS HMPREF4655_21057 NC_017360.1 1039936 1040577 D cag pathogenicity island protein 1039936..1040577 Helicobacter pylori 35A 12348098 YP_005770145.1 CDS HMPREF4655_21058 NC_017360.1 1040586 1043537 D COG: COG3451; Pfam: PF03135; InterPro: IPR004346; CAG pathogenicity island protein 23 1040586..1043537 Helicobacter pylori 35A 12348099 YP_005770146.1 CDS HMPREF4655_21059 NC_017360.1 1043539 1044345 D cag pathogenicity island protein 1043539..1044345 Helicobacter pylori 35A 12348100 YP_005770147.1 CDS HMPREF4655_21060 NC_017360.1 1044400 1044828 D cag pathogenicity island protein 1044400..1044828 Helicobacter pylori 35A 12348101 YP_005770148.1 CDS HMPREF4655_21061 NC_017360.1 1044830 1045942 D cag pathogenicity island protein 1044830..1045942 Helicobacter pylori 35A 12348102 YP_005770149.1 CDS HMPREF4655_21062 NC_017360.1 1045953 1047098 D cag pathogenicity island protein 1045953..1047098 Helicobacter pylori 35A 12348103 YP_005770150.1 CDS HMPREF4655_21063 NC_017360.1 1047095 1047808 D cag pathogenicity island protein 1047095..1047808 Helicobacter pylori 35A 12348104 YP_005770151.1 CDS HMPREF4655_21064 NC_017360.1 1047891 1048811 R cag pathogenicity island protein complement(1047891..1048811) Helicobacter pylori 35A 12348105 YP_005770152.1 CDS HMPREF4655_21065 NC_017360.1 1048826 1049956 R cag pathogenicity island protein complement(1048826..1049956) Helicobacter pylori 35A 12348106 YP_005770153.1 CDS HMPREF4655_21066 NC_017360.1 1050381 1050725 D cag pathogenicity island protein 1050381..1050725 Helicobacter pylori 35A 12348107 YP_005770154.1 CDS HMPREF4655_21067 NC_017360.1 1051374 1051529 R hypothetical protein complement(1051374..1051529) Helicobacter pylori 35A 12348108 YP_005770155.1 CDS HMPREF4655_21068 NC_017360.1 1051585 1051965 R cag pathogenicity island protein complement(1051585..1051965) Helicobacter pylori 35A 12348109 YP_005770156.1 CDS HMPREF4655_21069 NC_017360.1 1052306 1052437 R hypothetical protein complement(1052306..1052437) Helicobacter pylori 35A 12348110 YP_005770157.1 CDS HMPREF4655_21070 NC_017360.1 1052473 1052610 D hypothetical protein 1052473..1052610 Helicobacter pylori 35A 12348111 YP_005770158.1 CDS HMPREF4655_21071 NC_017360.1 1052776 1053375 D CAG pathogenicity island protein 13 1052776..1053375 Helicobacter pylori 35A 12348112 YP_005770159.1 CDS HMPREF4655_21072 NC_017360.1 1053577 1054419 R CAG pathogenicity island protein 12 complement(1053577..1054419) Helicobacter pylori 35A 12348113 YP_005770160.1 CDS HMPREF4655_21073 NC_017360.1 1054432 1055082 R cag pathogenicity island protein complement(1054432..1055082) Helicobacter pylori 35A 12348114 YP_005770161.1 CDS HMPREF4655_21074 NC_017360.1 1055356 1056114 D COG: COG3736; Pfam: PF04335; InterPro: IPR007430; cag pathogenicity island protein 1055356..1056114 Helicobacter pylori 35A 12348115 YP_005770162.1 CDS HMPREF4655_21075 NC_017360.1 1056119 1057726 D cag pathogenicity island protein 1056119..1057726 Helicobacter pylori 35A 12348116 YP_005770163.1 CDS HMPREF4655_21076 NC_017360.1 1057779 1059347 D COG: COG3504; Pfam: PF03524; InterPro: IPR010258; cag pathogenicity island protein 1057779..1059347 Helicobacter pylori 35A 12348117 YP_005770164.1 CDS HMPREF4655_21077 NC_017360.1 1059362 1064755 D COG: COG2948; Pfam: PF07337, PF03743; InterPro: IPR010853; cag pathogenicity island protein 1059362..1064755 Helicobacter pylori 35A 12348118 YP_005770165.1 CDS HMPREF4655_21078 NC_017360.1 1064745 1064879 D hypothetical protein 1064745..1064879 Helicobacter pylori 35A 12348119 YP_005770166.1 CDS HMPREF4655_21079 NC_017360.1 1064892 1065491 D Pfam: PF09053; InterPro: IPR015139; cag pathogenicity island protein 1064892..1065491 Helicobacter pylori 35A 12348120 YP_005770167.1 CDS virB NC_017360.1 1065496 1066488 D COG: COG0630; Pfam: PF00437; InterPro: IPR001482; P-type DNA transfer ATPase VirB11 1065496..1066488 Helicobacter pylori 35A 12348121 YP_005770168.1 CDS HMPREF4655_21081 NC_017360.1 1066497 1068743 D COG: COG3505; Pfam: PF02534; InterPro: IPR003688; cag pathogenicity island protein 1066497..1068743 Helicobacter pylori 35A 12348122 YP_005770169.1 CDS HMPREF4655_21082 NC_017360.1 1069051 1069560 R cag pathogenicity island protein complement(1069051..1069560) Helicobacter pylori 35A 12348123 YP_005770170.1 CDS HMPREF4655_21083 NC_017360.1 1069570 1071015 R cag pathogenicity island protein complement(1069570..1071015) Helicobacter pylori 35A 12348124 YP_005770171.1 CDS HMPREF4655_21084 NC_017360.1 1071031 1071228 R cag pathogenicity island protein (cage, cag2) complement(1071031..1071228) Helicobacter pylori 35A 12348125 YP_005770172.1 CDS HMPREF4655_21085 NC_017360.1 1071244 1071591 R cag pathogenicity island protein complement(1071244..1071591) Helicobacter pylori 35A 12348126 YP_005770173.1 CDS HMPREF4655_21086 NC_017360.1 1071702 1072574 D Pfam: PF08238; InterPro: IPR011990; Sel1 repeat superfamily protein 1071702..1072574 Helicobacter pylori 35A 12348127 YP_005770174.1 CDS HMPREF4655_21087 NC_017360.1 1072644 1073636 R COG: COG3034; hypothetical protein complement(1072644..1073636) Helicobacter pylori 35A 12348128 YP_005770175.1 CDS era NC_017360.1 1073633 1074538 R COG: COG1159; Pfam: PF01926, PF07650; InterPro: IPR005662; GTP-binding protein Era complement(1073633..1074538) Helicobacter pylori 35A 12348129 YP_005770176.1 CDS hslU NC_017360.1 1074538 1075869 R COG: COG1220; Pfam: PF07724; InterPro: IPR004491; ATP-dependent hsl protease ATP-binding subunit HslU complement(1074538..1075869) Helicobacter pylori 35A 12348130 YP_005770177.1 CDS hslV NC_017360.1 1075869 1076411 R COG: COG5405; Pfam: PF00227; InterPro: IPR001353; ATP-dependent protease HslVU complement(1075869..1076411) Helicobacter pylori 35A 12348131 YP_005770178.1 CDS rplI NC_017360.1 1076415 1076864 R COG: COG0359; Pfam: PF01281, PF03948; InterPro: IPR000244; 50S ribosomal protein L9 complement(1076415..1076864) Helicobacter pylori 35A 12348132 YP_005770179.1 CDS HMPREF4655_21092 NC_017360.1 1076927 1079101 R COG: COG1479; Pfam: PF03235, PF07510; InterPro: IPR004919; hypothetical protein DUF262 complement(1076927..1079101) Helicobacter pylori 35A 12348133 YP_005770180.1 CDS glnA NC_017360.1 1079131 1080576 D COG: COG0174; Pfam: PF03951, PF00120; InterPro: IPR004809; glutamate--ammonia ligase 1079131..1080576 Helicobacter pylori 35A 12348134 YP_005770181.1 CDS lpp NC_017360.1 1080785 1080952 R urease-enhancing factor complement(1080785..1080952) Helicobacter pylori 35A 12348135 YP_005770182.1 CDS dapB NC_017360.1 1081229 1081993 R COG: COG0289; Pfam: PF01113, PF05173; InterPro: IPR011770; dihydrodipicolinate reductase complement(1081229..1081993) Helicobacter pylori 35A 12348136 YP_005770183.1 CDS glcD NC_017360.1 1082016 1083395 R COG: COG0277; Pfam: PF01565, PF02913; InterPro: IPR004490; glycolate oxidase complement(1082016..1083395) Helicobacter pylori 35A 12348137 YP_005770184.1 CDS HMPREF4655_21097 NC_017360.1 1083397 1084719 R plasminogen-binding protein PgbA complement(1083397..1084719) Helicobacter pylori 35A 12348138 YP_005770185.1 CDS nudT14 NC_017360.1 1084712 1085350 R COG: COG0494; Pfam: PF00293; InterPro: IPR000086; UDP-sugar diphosphatase complement(1084712..1085350) Helicobacter pylori 35A 12348139 YP_005770186.1 CDS HMPREF4655_21099 NC_017360.1 1085350 1086558 R COG: COG0739; Pfam: PF01551; InterPro: IPR002886; M23/M37 family peptidase complement(1085350..1086558) Helicobacter pylori 35A 12348140 YP_005770187.1 CDS HMPREF4655_21102 NC_017360.1 1087502 1088533 R hypothetical protein complement(1087502..1088533) Helicobacter pylori 35A 12348142 YP_005770188.1 CDS gyrB NC_017360.1 1088540 1090861 R COG: COG0187; Pfam: PF02518, PF00204, PF01751, PF00986; InterPro: IPR011557; DNA topoisomerase subunit B complement(1088540..1090861) Helicobacter pylori 35A 12348143 YP_005770189.1 CDS dnaN NC_017360.1 1090873 1091997 R COG: COG0592; Pfam: PF00712, PF02767, PF02768; InterPro: IPR001001; DNA-directed DNA polymerase III subunit beta complement(1090873..1091997) Helicobacter pylori 35A 12348144 YP_005770190.1 CDS pldA NC_017360.1 1092055 1093122 R COG: COG2829; Pfam: PF02253; InterPro: IPR003187; phospholipase A1 complement(1092055..1093122) Helicobacter pylori 35A 12348145 YP_005770191.1 CDS HMPREF4655_21106 NC_017360.1 1093137 1094465 R COG: COG0733; Pfam: PF00209; InterPro: IPR000175; NSS family amino acid:sodium (Na+) symporter complement(1093137..1094465) Helicobacter pylori 35A 12348146 YP_005770192.1 CDS HMPREF4655_21107 NC_017360.1 1094478 1095806 R COG: COG0733; Pfam: PF00209; InterPro: IPR000175; NSS family amino acid:sodium (Na+) symporter complement(1094478..1095806) Helicobacter pylori 35A 12348147 YP_005770193.1 CDS HMPREF4655_21108 NC_017360.1 1096036 1096437 D COG: COG0824; Pfam: PF03061; InterPro: IPR006684; thioesterase 1096036..1096437 Helicobacter pylori 35A 12348148 YP_005770194.1 CDS HMPREF4655_21109 NC_017360.1 1096427 1096687 D hypothetical protein 1096427..1096687 Helicobacter pylori 35A 12348149 YP_005770195.1 CDS murD NC_017360.1 1096684 1097952 R COG: COG0771; Pfam: PF08245, PF02875; InterPro: IPR005762; UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase complement(1096684..1097952) Helicobacter pylori 35A 12348150 YP_005770196.1 CDS mraY NC_017360.1 1097954 1099093 R COG: COG0472; Pfam: PF00953; InterPro: IPR003524; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1097954..1099093) Helicobacter pylori 35A 12348151 YP_005770197.1 CDS hpaA NC_017360.1 1099140 1099982 D Pfam: PF05211; InterPro: IPR007876; neuraminyllactose-binding hemagglutinin 1099140..1099982 Helicobacter pylori 35A 12348152 YP_005770198.1 CDS rpmB NC_017360.1 1100082 1100270 D Pfam: PF00830; InterPro: IPR001383; 50S ribosomal protein L28 1100082..1100270 Helicobacter pylori 35A 12348153 YP_005770199.1 CDS HMPREF4655_21114 NC_017360.1 1100415 1101557 D COG: COG1226; Pfam: PF02254, PF02080; InterPro: IPR016040; potassium channel protein 1100415..1101557 Helicobacter pylori 35A 12348154 YP_005770200.1 CDS HMPREF4655_21115 NC_017360.1 1101559 1101954 R hypothetical protein complement(1101559..1101954) Helicobacter pylori 35A 12348155 YP_005770201.1 CDS HMPREF4655_21116 NC_017360.1 1102043 1103716 R hypothetical protein complement(1102043..1103716) Helicobacter pylori 35A 12348156 YP_005770202.1 CDS HMPREF4655_21117 NC_017360.1 1104022 1104429 R hypothetical protein complement(1104022..1104429) Helicobacter pylori 35A 12348157 YP_005770203.1 CDS ruvA NC_017360.1 1104481 1105032 R COG: COG0632; Pfam: PF01330, PF07499; InterPro: IPR000085; crossover junction ATP-dependent DNA helicase RuvA complement(1104481..1105032) Helicobacter pylori 35A 12348158 YP_005770204.1 CDS HMPREF4655_21119 NC_017360.1 1105056 1106900 R hypothetical protein complement(1105056..1106900) Helicobacter pylori 35A 12348159 YP_005770205.1 CDS mviN NC_017360.1 1106993 1108453 D COG: COG0728; Pfam: PF03023; InterPro: IPR004268; integral membrane protein MviN 1106993..1108453 Helicobacter pylori 35A 12348160 YP_005770206.1 CDS cysS NC_017360.1 1108454 1109851 D COG: COG0215; Pfam: PF01406; InterPro: IPR002308; cysteine--tRNA ligase 1108454..1109851 Helicobacter pylori 35A 12348161 YP_005770207.1 CDS HMPREF4655_21122 NC_017360.1 1110050 1113925 D COG: COG5651; Pfam: PF02691, PF03797; InterPro: IPR003842; vacuolating cytotoxin 1110050..1113925 Helicobacter pylori 35A 12348162 YP_005770208.1 CDS HMPREF4655_21123 NC_017360.1 1113984 1114751 R COG: COG1120; Pfam: PF00005; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC protein complement(1113984..1114751) Helicobacter pylori 35A 12348163 YP_005770209.1 CDS fecD NC_017360.1 1114751 1115731 R COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Fe3+ ABC superfamily ATP binding cassette transporter, membrane protein complement(1114751..1115731) Helicobacter pylori 35A 12348164 YP_005770210.1 CDS HMPREF4655_21125 NC_017360.1 1115724 1116572 R COG: COG1028; Pfam: PF00106; InterPro: IPR016040; short chain dehydrogenase complement(1115724..1116572) Helicobacter pylori 35A 12348165 YP_005770211.1 CDS HMPREF4655_21126 NC_017360.1 1116712 1117236 D COG: COG1607; Pfam: PF03061; InterPro: IPR006683; VdlD protein 1116712..1117236 Helicobacter pylori 35A 12348166 YP_005770212.1 CDS HMPREF4655_21127 NC_017360.1 1117331 1117597 R COG: COG3041; Pfam: PF05016; InterPro: IPR004386; addiction module toxin RelE complement(1117331..1117597) Helicobacter pylori 35A 12348167 YP_005770213.1 CDS HMPREF4655_21128 NC_017360.1 1117578 1117955 R hypothetical protein complement(1117578..1117955) Helicobacter pylori 35A 12348168 YP_005770214.1 CDS HMPREF4655_21129 NC_017360.1 1118547 1120781 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(1118547..1120781) Helicobacter pylori 35A 12348169 YP_005770215.1 CDS HMPREF4655_21130 NC_017360.1 1120778 1120984 R hypothetical protein complement(1120778..1120984) Helicobacter pylori 35A 12348170 YP_005770216.1 CDS HMPREF4655_21131 NC_017360.1 1121302 1121823 D hypothetical protein 1121302..1121823 Helicobacter pylori 35A 12348173 YP_005770217.1 CDS hypD NC_017360.1 1121774 1122886 R COG: COG0409; Pfam: PF01924; InterPro: IPR002780; hydrogenase expression/formation protein HypD complement(1121774..1122886) Helicobacter pylori 35A 12348174 YP_005770218.1 CDS hypC NC_017360.1 1122914 1123150 R COG: COG0298; Pfam: PF01455; InterPro: IPR001109; hydrogenase assembly chaperone HypC/HupF complement(1122914..1123150) Helicobacter pylori 35A 12348175 YP_005770219.1 CDS hypB NC_017360.1 1123150 1123878 R COG: COG0378; Pfam: PF02492; InterPro: IPR004392; hydrogenase nickel incorporation protein HypB complement(1123150..1123878) Helicobacter pylori 35A 12348176 YP_005770220.1 CDS HMPREF4655_21135 NC_017360.1 1123994 1124116 R hypothetical protein complement(1123994..1124116) Helicobacter pylori 35A 12348177 YP_005770221.1 CDS HMPREF4655_21136 NC_017360.1 1124127 1124426 R COG: COG1917; hypothetical protein complement(1124127..1124426) Helicobacter pylori 35A 12348178 YP_005770222.1 CDS ackA NC_017360.1 1124437 1125642 R COG: COG0282; Pfam: PF00871; InterPro: IPR004372; acetate kinase complement(1124437..1125642) Helicobacter pylori 35A 12348179 YP_005770223.1 CDS pta NC_017360.1 1125660 1127237 R COG: COG0280; Pfam: PF01515; InterPro: IPR002505; phosphate acetyltransferase complement(1125660..1127237) Helicobacter pylori 35A 12348180 YP_005770224.1 CDS HMPREF4655_21139 NC_017360.1 1127469 1129031 D Pfam: PF02120; hypothetical protein 1127469..1129031 Helicobacter pylori 35A 12348181 YP_005770225.1 CDS flgD NC_017360.1 1129082 1130032 D COG: COG1843; Pfam: PF03963; InterPro: IPR005648; hook assembly protein 1129082..1130032 Helicobacter pylori 35A 12348182 YP_005770226.1 CDS flgE2 NC_017360.1 1130029 1131846 D COG: COG1749; Pfam: PF00460, PF07559, PF06429; InterPro: IPR011491; flagellar hook protein 1130029..1131846 Helicobacter pylori 35A 12348183 YP_005770227.1 CDS HMPREF4655_21142 NC_017360.1 1131898 1132527 D restriction endonuclease 1131898..1132527 Helicobacter pylori 35A 12348184 YP_005770228.1 CDS hinDIIM NC_017360.1 1132496 1133656 D COG: COG0827; Pfam: PF07669; adenine specific DNA methyltransferase 1132496..1133656 Helicobacter pylori 35A 12348185 YP_005770229.1 CDS HMPREF4655_21144 NC_017360.1 1133650 1135680 D COG: COG0210; Pfam: PF00580; InterPro: IPR000212; rep helicase, single-stranded DNA-dependent ATPase 1133650..1135680 Helicobacter pylori 35A 12348186 YP_005770230.1 CDS HMPREF4655_21145 NC_017360.1 1135981 1136100 R hypothetical protein complement(1135981..1136100) Helicobacter pylori 35A 12348187 YP_005770231.1 CDS hopC NC_017360.1 1136223 1137776 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein HopC 1136223..1137776 Helicobacter pylori 35A 12348188 YP_005770232.1 CDS HMPREF4655_21147 NC_017360.1 1137798 1139387 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 1137798..1139387 Helicobacter pylori 35A 12348189 YP_005770233.1 CDS hofG NC_017360.1 1139928 1141541 R Pfam: PF02521; InterPro: IPR003678; hof-family outer membrane protein complement(1139928..1141541) Helicobacter pylori 35A 12348190 YP_005770234.1 CDS frpB3 NC_017360.1 1141712 1143901 R COG: COG1629; Pfam: PF07715, PF00593; InterPro: IPR000531; iron-regulated outer membrane protein complement(1141712..1143901) Helicobacter pylori 35A 12348191 YP_005770235.1 CDS HMPREF4655_21150 NC_017360.1 1144003 1144149 R hypothetical protein complement(1144003..1144149) Helicobacter pylori 35A 12348192 YP_005770236.1 CDS HMPREF4655_21151 NC_017360.1 1144324 1144755 R hypothetical protein complement(1144324..1144755) Helicobacter pylori 35A 12348193 YP_005770237.1 CDS carB NC_017360.1 1144760 1148017 R COG: COG0458; Pfam: PF00289, PF02786, PF02787, PF02142; InterPro: IPR006275; carbamoyl-phosphate synthase large subunit complement(1144760..1148017) Helicobacter pylori 35A 12348194 YP_005770238.1 CDS HMPREF4655_21153 NC_017360.1 1148114 1148806 R COG: COG0670; Pfam: PF01027; InterPro: IPR006214; TEGT family testis enhanced gene transfer transporter complement(1148114..1148806) Helicobacter pylori 35A 12348195 YP_005770239.1 CDS gapA NC_017360.1 1148941 1149945 D COG: COG0057; Pfam: PF00044, PF02800; InterPro: IPR000173; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 1148941..1149945 Helicobacter pylori 35A 12348196 YP_005770240.1 CDS vacA2 NC_017360.1 1150025 1157173 D COG: COG5651; Pfam: PF03077, PF02691, PF03797; InterPro: IPR005546; vacuolating cytotoxin VacA family protein 1150025..1157173 Helicobacter pylori 35A 12348197 YP_005770241.1 CDS HMPREF4655_21156 NC_017360.1 1157225 1158325 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 1157225..1158325 Helicobacter pylori 35A 12348198 YP_005770242.1 CDS HMPREF4655_21157 NC_017360.1 1158378 1158584 R COG: COG1942; Pfam: PF01361; InterPro: IPR004370; 4-oxalocrotonate tautomerase complement(1158378..1158584) Helicobacter pylori 35A 12348199 YP_005770243.1 CDS recR NC_017360.1 1158730 1159311 D COG: COG0353; Pfam: PF02132; InterPro: IPR000093; recombination protein R 1158730..1159311 Helicobacter pylori 35A 12348200 YP_005770244.1 CDS truD NC_017360.1 1159308 1160453 D COG: COG0585; Pfam: PF01142; InterPro: IPR001656; tRNA pseudouridine synthase D 1159308..1160453 Helicobacter pylori 35A 12348201 YP_005770245.1 CDS htpX NC_017360.1 1160422 1161372 D COG: COG0501; Pfam: PF01435; InterPro: IPR001915; heat shock protein HtpX 1160422..1161372 Helicobacter pylori 35A 12348202 YP_005770246.1 CDS folE NC_017360.1 1161373 1161915 D COG: COG0302; Pfam: PF01227; InterPro: IPR001474; GTP cyclohydrolase I 1161373..1161915 Helicobacter pylori 35A 12348203 YP_005770247.1 CDS ispA NC_017360.1 1161931 1162842 D COG: COG0142; Pfam: PF00348; InterPro: IPR008949; geranyltranstransferase 1161931..1162842 Helicobacter pylori 35A 12348204 YP_005770248.1 CDS surE NC_017360.1 1162839 1163642 D COG: COG0496; Pfam: PF01975; InterPro: IPR002828; 5'-nucleotidase 1162839..1163642 Helicobacter pylori 35A 12348205 YP_005770249.1 CDS HMPREF4655_21164 NC_017360.1 1163639 1164298 D hypothetical protein 1163639..1164298 Helicobacter pylori 35A 12348206 YP_005770250.1 CDS ptpS NC_017360.1 1164302 1164904 D COG: COG0720; 6-pyruvoyl-tetrahydropterin synthase 1164302..1164904 Helicobacter pylori 35A 12348207 YP_005770251.1 CDS HMPREF4655_21166 NC_017360.1 1164901 1165656 D COG: COG0602; Pfam: PF04055; radical SAM domain-containing protein 1164901..1165656 Helicobacter pylori 35A 12348208 YP_005770252.1 CDS HMPREF4655_21167 NC_017360.1 1165667 1166152 D COG: COG0454; Pfam: PF00583; InterPro: IPR016181; GNAT family acetyltransferase 1165667..1166152 Helicobacter pylori 35A 12348209 YP_005770253.1 CDS homB NC_017360.1 1166371 1168356 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein HomB 1166371..1168356 Helicobacter pylori 35A 12348210 YP_005770254.1 CDS proP NC_017360.1 1168489 1169886 R COG: COG0477; Pfam: PF07690; InterPro: IPR011701; proline/betaine transporter complement(1168489..1169886) Helicobacter pylori 35A 12348211 YP_005770255.1 CDS HMPREF4655_21170 NC_017360.1 1170134 1171834 R COG: COG1479; Pfam: PF03235; InterPro: IPR004919; hypothetical protein complement(1170134..1171834) Helicobacter pylori 35A 12348212 YP_005770256.1 CDS tcyB NC_017360.1 1171902 1172624 R COG: COG0765; Pfam: PF00528; InterPro: IPR000515; amino acid ABC superfamily ATP binding cassette transporter, membrane protein complement(1171902..1172624) Helicobacter pylori 35A 12348213 YP_005770257.1 CDS tcyA NC_017360.1 1172599 1173375 R COG: COG0834; Pfam: PF00497; InterPro: IPR001638; amino acid ABC superfamily ATP binding cassette transporter, binding protein complement(1172599..1173375) Helicobacter pylori 35A 12348214 YP_005770258.1 CDS alr NC_017360.1 1173446 1174579 R COG: COG0787; Pfam: PF01168, PF00842; InterPro: IPR000821; alanine racemase complement(1173446..1174579) Helicobacter pylori 35A 12348215 YP_005770259.1 CDS agcS NC_017360.1 1174586 1175938 R COG: COG1115; Pfam: PF01235; InterPro: IPR001463; AGCS family alanine/glycine:sodium (Na+) symporter complement(1174586..1175938) Helicobacter pylori 35A 12348216 YP_005770260.1 CDS dadA NC_017360.1 1175979 1177211 R COG: COG0665; Pfam: PF01266; InterPro: IPR006076; D-amino-acid dehydrogenase complement(1175979..1177211) Helicobacter pylori 35A 12348217 YP_005770261.1 CDS HMPREF4655_21176 NC_017360.1 1177233 1177610 R COG: COG0251; Pfam: PF01042; InterPro: IPR013813; endoribonuclease L-PSP complement(1177233..1177610) Helicobacter pylori 35A 12348218 YP_005770262.1 CDS HMPREF4655_21177 NC_017360.1 1178034 1178333 D Trl protein 1178034..1178333 Helicobacter pylori 35A 12348220 YP_005770263.1 CDS HMPREF4655_21178 NC_017360.1 1178892 1180382 D COG: COG1757; Pfam: PF03553; InterPro: IPR004770; NhaC family sodium:proton (Na+:H+) antiporter 1178892..1180382 Helicobacter pylori 35A 12348224 YP_005770264.1 CDS HMPREF4655_21179 NC_017360.1 1180700 1181059 D hypothetical protein 1180700..1181059 Helicobacter pylori 35A 12348225 YP_005770265.1 CDS HMPREF4655_21180 NC_017360.1 1181064 1181210 R hypothetical protein complement(1181064..1181210) Helicobacter pylori 35A 12348226 YP_005770266.1 CDS HMPREF4655_21181 NC_017360.1 1181887 1182900 R hypothetical protein complement(1181887..1182900) Helicobacter pylori 35A 12348227 YP_005770267.1 CDS HMPREF4655_21182 NC_017360.1 1182910 1183362 R COG: COG1576; Pfam: PF02590; InterPro: IPR003742; SPOUT methyltransferase superfamily protein complement(1182910..1183362) Helicobacter pylori 35A 12348228 YP_005770268.1 CDS accD NC_017360.1 1183376 1184245 R COG: COG0777; Pfam: PF01039; InterPro: IPR000438; acetyl-coA carboxylase carboxyl transferase subunit beta complement(1183376..1184245) Helicobacter pylori 35A 12348229 YP_005770269.1 CDS HMPREF4655_21184 NC_017360.1 1184326 1184940 D hypothetical protein 1184326..1184940 Helicobacter pylori 35A 12348230 YP_005770270.1 CDS HMPREF4655_21185 NC_017360.1 1184951 1185607 D COG: COG1546; Pfam: PF02464; InterPro: IPR008136; hypothetical protein 1184951..1185607 Helicobacter pylori 35A 12348231 YP_005770271.1 CDS HMPREF4655_21186 NC_017360.1 1185610 1186176 R hypothetical protein complement(1185610..1186176) Helicobacter pylori 35A 12348232 YP_005770272.1 CDS HMPREF4655_21187 NC_017360.1 1186241 1186873 R Pfam: PF00881; InterPro: IPR000415; oxygen-insensitive NADPH nitroreductase complement(1186241..1186873) Helicobacter pylori 35A 12348233 YP_005770273.1 CDS lgt NC_017360.1 1186870 1187724 R COG: COG0682; Pfam: PF01790; InterPro: IPR001640; prolipoprotein diacylglyceryl transferase complement(1186870..1187724) Helicobacter pylori 35A 12348234 YP_005770274.1 CDS rluC NC_017360.1 1187734 1188462 R COG: COG0564; Pfam: PF00849; InterPro: IPR006145; ribosomal large subunit pseudouridine synthase C complement(1187734..1188462) Helicobacter pylori 35A 12348235 YP_005770275.1 CDS waaA NC_017360.1 1188476 1189657 R COG: COG1519; Pfam: PF04413; InterPro: IPR007507; 3-deoxy-D-manno-octulosonic-acid transferase complement(1188476..1189657) Helicobacter pylori 35A 12348236 YP_005770276.1 CDS HMPREF4655_21191 NC_017360.1 1189658 1190422 R COG: COG1579; Pfam: PF02591; InterPro: IPR003743; hypothetical protein complement(1189658..1190422) Helicobacter pylori 35A 12348237 YP_005770277.1 CDS HMPREF4655_21192 NC_017360.1 1190432 1191163 R COG: COG0327; Pfam: PF01784; InterPro: IPR002678; hypothetical protein complement(1190432..1191163) Helicobacter pylori 35A 12348238 YP_005770278.1 CDS glyQ NC_017360.1 1191165 1192061 R COG: COG0752; Pfam: PF02091; InterPro: IPR002310; glycyl-tRNA synthetase subunit alpha complement(1191165..1192061) Helicobacter pylori 35A 12348239 YP_005770279.1 CDS gpsA NC_017360.1 1192076 1193050 R COG: COG0240; Pfam: PF01210, PF07479; InterPro: IPR006168; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) complement(1192076..1193050) Helicobacter pylori 35A 12348240 YP_005770280.1 CDS HMPREF4655_21202 NC_017360.1 1199343 1199660 R hypothetical protein complement(1199343..1199660) Helicobacter pylori 35A 12348244 YP_005770281.1 CDS czcA NC_017360.1 1199635 1202694 R COG: COG3696; Pfam: PF00873; InterPro: IPR004763; CzcA family heavy metal efflux pump complement(1199635..1202694) Helicobacter pylori 35A 12348245 YP_005770282.1 CDS nccB NC_017360.1 1202694 1203749 R COG: COG0845; nickel-cobalt-cadmium resistance protein complement(1202694..1203749) Helicobacter pylori 35A 12348246 YP_005770283.1 CDS HMPREF4655_21205 NC_017360.1 1203770 1205065 R Pfam: PF02321; InterPro: IPR003423; nickel cobalt outer membrane efflux protein complement(1203770..1205065) Helicobacter pylori 35A 12348247 YP_005770284.1 CDS glyS NC_017360.1 1205055 1207157 R COG: COG0751; Pfam: PF02092; InterPro: IPR015944; glycyl-tRNA synthetase subunit beta complement(1205055..1207157) Helicobacter pylori 35A 12348248 YP_005770285.1 CDS HMPREF4655_21207 NC_017360.1 1207269 1208327 D hypothetical protein 1207269..1208327 Helicobacter pylori 35A 12348249 YP_005770286.1 CDS gpmI NC_017360.1 1208340 1209815 D COG: COG0696; Pfam: PF06415, PF01676; InterPro: IPR005995; phosphoglycerate mutase 1208340..1209815 Helicobacter pylori 35A 12348250 YP_005770287.1 CDS gatC NC_017360.1 1209830 1210111 D COG: COG0721; Pfam: PF02686; InterPro: IPR003837; glutamyl-tRNA(Gln) amidotransferase subunit C 1209830..1210111 Helicobacter pylori 35A 12348251 YP_005770288.1 CDS bioA NC_017360.1 1210184 1211494 R COG: COG0161; Pfam: PF00202; InterPro: IPR005815; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(1210184..1211494) Helicobacter pylori 35A 12348252 YP_005770289.1 CDS HMPREF4655_21211 NC_017360.1 1211534 1213087 D COG: COG0760; peptidyl-prolyl cis-trans isomerase 1211534..1213087 Helicobacter pylori 35A 12348253 YP_005770290.1 CDS ftsA NC_017360.1 1213087 1214583 D COG: COG0849; Pfam: PF02491; InterPro: IPR003494; cell division protein FtsA 1213087..1214583 Helicobacter pylori 35A 12348254 YP_005770291.1 CDS ftsZ NC_017360.1 1214717 1215874 D COG: COG0206; Pfam: PF00091, PF03953; InterPro: IPR000158; cell division protein FtsZ 1214717..1215874 Helicobacter pylori 35A 12348255 YP_005770292.1 CDS HMPREF4655_21214 NC_017360.1 1216251 1216412 R hypothetical protein complement(1216251..1216412) Helicobacter pylori 35A 12348256 YP_005770293.1 CDS HMPREF4655_21215 NC_017360.1 1216808 1217632 R COG: COG0668; Pfam: PF00924; InterPro: IPR006685; MscS family small conductance mechanosenstive ion channel complement(1216808..1217632) Helicobacter pylori 35A 12348257 YP_005770294.1 CDS HMPREF4655_21216 NC_017360.1 1217625 1217825 R hypothetical protein complement(1217625..1217825) Helicobacter pylori 35A 12348258 YP_005770295.1 CDS HMPREF4655_21217 NC_017360.1 1221773 1221925 R hypothetical protein complement(1221773..1221925) Helicobacter pylori 35A 12348262 YP_005770296.1 CDS HMPREF4655_21218 NC_017360.1 1222140 1222490 D hypothetical protein 1222140..1222490 Helicobacter pylori 35A 12348263 YP_005770297.1 CDS HMPREF4655_21221 NC_017360.1 1224600 1225391 D HP0423 family protein 1224600..1225391 Helicobacter pylori 35A 12348265 YP_005770298.1 CDS speA NC_017360.1 1225541 1227388 R COG: COG1166; Pfam: PF02784, PF00278; InterPro: IPR002985; arginine 2-monooxygenase complement(1225541..1227388) Helicobacter pylori 35A 12348266 YP_005770299.1 CDS capJ NC_017360.1 1227403 1228572 R COG: COG0438; Pfam: PF00534; InterPro: IPR001296; type 1 capsular polysaccharide biosynthesis protein J complement(1227403..1228572) Helicobacter pylori 35A 12348267 YP_005770300.1 CDS HMPREF4655_21224 NC_017360.1 1228577 1229005 R COG: COG2050; Pfam: PF03061; InterPro: IPR006683; hypothetical protein complement(1228577..1229005) Helicobacter pylori 35A 12348268 YP_005770301.1 CDS HMPREF4655_21225 NC_017360.1 1229023 1229808 R COG: COG0500; Pfam: PF08003; InterPro: IPR010017; S-adenosylmethionine-dependent methyltransferase complement(1229023..1229808) Helicobacter pylori 35A 12348269 YP_005770302.1 CDS HMPREF4655_21226 NC_017360.1 1229812 1230819 R hypothetical protein complement(1229812..1230819) Helicobacter pylori 35A 12348270 YP_005770303.1 CDS metG NC_017360.1 1230820 1232772 R COG: COG0143; Pfam: PF09334, PF01588; InterPro: IPR002304; methionine--tRNA ligase complement(1230820..1232772) Helicobacter pylori 35A 12348271 YP_005770304.1 CDS cfa NC_017360.1 1232941 1234110 D COG: COG2230; Pfam: PF02353; InterPro: IPR003333; cyclopropane-fatty-acyl-phospholipid synthase 1232941..1234110 Helicobacter pylori 35A 12348272 YP_005770305.1 CDS HMPREF4655_21229 NC_017360.1 1234113 1235996 R COG: COG0668; Pfam: PF00924; InterPro: IPR006685; hypothetical protein complement(1234113..1235996) Helicobacter pylori 35A 12348273 YP_005770306.1 CDS dksA NC_017360.1 1236271 1236408 R DnaK suppressor protein complement(1236271..1236408) Helicobacter pylori 35A 12348274 YP_005770307.1 CDS hpaA2 NC_017360.1 1237166 1237915 R Pfam: PF05211; InterPro: IPR007876; neuraminyllactose-binding hemagglutinin family protein (hpaA) complement(1237166..1237915) Helicobacter pylori 35A 12348279 YP_005770308.1 CDS guaA NC_017360.1 1237996 1239522 R COG: COG0519; Pfam: PF00117, PF03054, PF00958; InterPro: IPR001674; GMP synthase complement(1237996..1239522) Helicobacter pylori 35A 12348280 YP_005770309.1 CDS HMPREF4655_21233 NC_017360.1 1239533 1240021 R hypothetical protein complement(1239533..1240021) Helicobacter pylori 35A 12348281 YP_005770310.1 CDS HMPREF4655_21238 NC_017360.1 1242664 1243254 R hypothetical protein complement(1242664..1243254) Helicobacter pylori 35A 12348283 YP_005770311.1 CDS HMPREF4655_21239 NC_017360.1 1243280 1244602 R COG: COG0520; Pfam: PF00266; InterPro: IPR000192; nifS family protein complement(1243280..1244602) Helicobacter pylori 35A 12348284 YP_005770312.1 CDS HMPREF4655_21240 NC_017360.1 1244621 1244935 R COG: COG0537; Pfam: PF01230; InterPro: IPR011151; HIT family protein complement(1244621..1244935) Helicobacter pylori 35A 12348285 YP_005770313.1 CDS pheS NC_017360.1 1245016 1246002 D COG: COG0016; Pfam: PF02912, PF01409; InterPro: IPR004529; phenylalanyl-tRNA synthetase subunit alpha 1245016..1246002 Helicobacter pylori 35A 12348286 YP_005770314.1 CDS pheT NC_017360.1 1246002 1248296 D COG: COG0072; Pfam: PF01588, PF03484, PF03147; InterPro: IPR004532; phenylalanyl-tRNA synthetase subunit beta 1246002..1248296 Helicobacter pylori 35A 12348287 YP_005770315.1 CDS aroA NC_017360.1 1248312 1249601 D COG: COG0128; Pfam: PF00275; InterPro: IPR006264; 3-phosphoshikimate 1-carboxyvinyltransferase 1248312..1249601 Helicobacter pylori 35A 12348288 YP_005770316.1 CDS ispH NC_017360.1 1249591 1250415 D COG: COG0761; Pfam: PF02401; InterPro: IPR003451; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1249591..1250415 Helicobacter pylori 35A 12348289 YP_005770317.1 CDS rpsA NC_017360.1 1250536 1252194 D COG: COG0539; Pfam: PF00575; InterPro: IPR000110; 30S ribosomal protein S1 1250536..1252194 Helicobacter pylori 35A 12348290 YP_005770318.1 CDS HMPREF4655_21246 NC_017360.1 1252223 1252762 D hypothetical protein 1252223..1252762 Helicobacter pylori 35A 12348291 YP_005770319.1 CDS serA NC_017360.1 1252778 1254352 D COG: COG0111; Pfam: PF00389, PF02826, PF01842; InterPro: IPR006236; phosphoglycerate dehydrogenase 1252778..1254352 Helicobacter pylori 35A 12348292 YP_005770320.1 CDS HMPREF4655_21248 NC_017360.1 1254362 1256212 D COG: COG0043; Pfam: PF01977; InterPro: IPR002830; SCO4490 family menaquinone biosynthesis decarboxylase 1254362..1256212 Helicobacter pylori 35A 12348293 YP_005770321.1 CDS HMPREF4655_21249 NC_017360.1 1256222 1256890 D COG: COG0325; Pfam: PF01168; InterPro: IPR011078; YggS family pyridoxal phosphate enzyme 1256222..1256890 Helicobacter pylori 35A 12348294 YP_005770322.1 CDS HMPREF4655_21250 NC_017360.1 1256892 1257650 D COG: COG2908; Pfam: PF00149; Ser/Thr protein phosphatase 1256892..1257650 Helicobacter pylori 35A 12348295 YP_005770323.1 CDS cheV3 NC_017360.1 1257654 1258589 D COG: COG0835; Pfam: PF01584, PF00072; InterPro: IPR002545; chemotaxis protein CheV 1257654..1258589 Helicobacter pylori 35A 12348296 YP_005770324.1 CDS cheA NC_017360.1 1258647 1261073 D COG: COG0643; Pfam: PF01627, PF02895, PF02518, PF01584, PF00072; InterPro: IPR003594; chemotaxis histidine kinase CheA 1258647..1261073 Helicobacter pylori 35A 12348297 YP_005770325.1 CDS cheW NC_017360.1 1261070 1261567 D COG: COG0835; Pfam: PF01584; InterPro: IPR002545; chemotaxis signal transduction protein CheW 1261070..1261567 Helicobacter pylori 35A 12348298 YP_005770326.1 CDS tpx NC_017360.1 1261817 1262317 R COG: COG2077; Pfam: PF08534; InterPro: IPR012335; thiol peroxidase complement(1261817..1262317) Helicobacter pylori 35A 12348299 YP_005770327.1 CDS sodB NC_017360.1 1262541 1263182 D COG: COG0605; Pfam: PF00081, PF02777; InterPro: IPR001189; superoxide dismutase 1262541..1263182 Helicobacter pylori 35A 12348300 YP_005770328.1 CDS HMPREF4655_21256 NC_017360.1 1263234 1263953 D COG: COG0500; Pfam: PF08241; InterPro: IPR005271; S-adenosyl-L-methionine-dependent methyltransferase 1263234..1263953 Helicobacter pylori 35A 12348301 YP_005770329.1 CDS priA NC_017360.1 1263987 1265846 R COG: COG1198; Pfam: PF00270, PF00271; InterPro: IPR005259; DNA replication factor Y complement(1263987..1265846) Helicobacter pylori 35A 12348302 YP_005770330.1 CDS HMPREF4655_21258 NC_017360.1 1265831 1266067 R hypothetical protein complement(1265831..1266067) Helicobacter pylori 35A 12348303 YP_005770331.1 CDS HMPREF4655_21259 NC_017360.1 1266080 1266307 R hypothetical protein complement(1266080..1266307) Helicobacter pylori 35A 12348304 YP_005770332.1 CDS HMPREF4655_21260 NC_017360.1 1266352 1266471 R hypothetical protein complement(1266352..1266471) Helicobacter pylori 35A 12348305 YP_005770333.1 CDS HMPREF4655_21261 NC_017360.1 1266510 1267253 D Pfam: PF05036; hypothetical protein 1266510..1267253 Helicobacter pylori 35A 12348306 YP_005770334.1 CDS HMPREF4655_21262 NC_017360.1 1267261 1267788 R hypothetical protein complement(1267261..1267788) Helicobacter pylori 35A 12348307 YP_005770335.1 CDS yjr117W NC_017360.1 1267970 1269193 D COG: COG0501; Pfam: PF01435; InterPro: IPR001915; zinc-metallo protease 1267970..1269193 Helicobacter pylori 35A 12348308 YP_005770336.1 CDS hemK NC_017360.1 1269190 1270020 D COG: COG2890; Pfam: PF05175; InterPro: IPR004556; protoporphyrinogen oxidase 1269190..1270020 Helicobacter pylori 35A 12348309 YP_005770337.1 CDS gdhA NC_017360.1 1270086 1271432 D COG: COG0334; Pfam: PF02812, PF00208; InterPro: IPR006095; glutamate dehydrogenase (NADP(+)) 1270086..1271432 Helicobacter pylori 35A 12348310 YP_005770338.1 CDS HMPREF4655_21266 NC_017360.1 1271451 1272845 R InterPro: IPR001503; alpha-1,3/4-fucosyltransferase complement(1271451..1272845) Helicobacter pylori 35A 12348311 YP_005770339.1 CDS ycf NC_017360.1 1272855 1275665 R COG: COG0755; Pfam: PF01578; InterPro: IPR002541; cytochrome c biogenesis protein complement(1272855..1275665) Helicobacter pylori 35A 12348312 YP_005770340.1 CDS dsbC NC_017360.1 1275674 1276345 R COG: COG2143; disulfide interchange protein complement(1275674..1276345) Helicobacter pylori 35A 12348313 YP_005770341.1 CDS hemH NC_017360.1 1276419 1277426 R COG: COG0276; Pfam: PF00762; InterPro: IPR001015; ferrochelatase complement(1276419..1277426) Helicobacter pylori 35A 12348314 YP_005770342.1 CDS HMPREF4655_21270 NC_017360.1 1277482 1277913 D TerC family integral membrane protein 1277482..1277913 Helicobacter pylori 35A 12348315 YP_005770343.1 CDS HMPREF4655_21271 NC_017360.1 1277914 1278594 D COG: COG1385; Pfam: PF04452; InterPro: IPR006700; RsmE family RNA methyltransferase 1277914..1278594 Helicobacter pylori 35A 12348316 YP_005770344.1 CDS homD2 NC_017360.1 1278618 1280840 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein HomD complement(1278618..1280840) Helicobacter pylori 35A 12348317 YP_005770345.1 CDS dcd NC_017360.1 1280998 1281564 R COG: COG0717; Pfam: PF00692; InterPro: IPR011962; dCTP deaminase complement(1280998..1281564) Helicobacter pylori 35A 12348318 YP_005770346.1 CDS accB NC_017360.1 1281687 1282157 D COG: COG0511; Pfam: PF00364; InterPro: IPR001249; acetyl-CoA carboxylase biotin carboxyl carrier subunit 1281687..1282157 Helicobacter pylori 35A 12348319 YP_005770347.1 CDS accC NC_017360.1 1282163 1283530 D COG: COG0439; Pfam: PF00289, PF02786, PF02785; InterPro: IPR004549; acetyl-CoA carboxylase subunit A 1282163..1283530 Helicobacter pylori 35A 12348320 YP_005770348.1 CDS HMPREF4655_21276 NC_017360.1 1283623 1284585 D type II DNA modification enzyme (methyltransferase) 1283623..1284585 Helicobacter pylori 35A 12348321 YP_005770349.1 CDS HMPREF4655_21277 NC_017360.1 1284585 1285133 D hypothetical protein 1284585..1285133 Helicobacter pylori 35A 12348322 YP_005770350.1 CDS HMPREF4655_21278 NC_017360.1 1285182 1285826 D hypothetical protein 1285182..1285826 Helicobacter pylori 35A 12348323 YP_005770351.1 CDS pseC NC_017360.1 1285823 1286950 D COG: COG0399; Pfam: PF01041; InterPro: IPR000653; UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase 1285823..1286950 Helicobacter pylori 35A 12348324 YP_005770352.1 CDS nrdB NC_017360.1 1287268 1288293 D COG: COG0208; Pfam: PF00268; InterPro: IPR000358; ribonucleotide-diphosphate reductase subunit beta 1287268..1288293 Helicobacter pylori 35A 12348326 YP_005770353.1 CDS pcm NC_017360.1 1288303 1288932 D COG: COG2518; Pfam: PF01135; InterPro: IPR000682; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1288303..1288932 Helicobacter pylori 35A 12348327 YP_005770354.1 CDS HMPREF4655_21282 NC_017360.1 1288943 1289980 D COG: COG0795; Pfam: PF03739; InterPro: IPR005495; hypothetical protein 1288943..1289980 Helicobacter pylori 35A 12348328 YP_005770355.1 CDS truA NC_017360.1 1289981 1290709 D COG: COG0101; Pfam: PF01416; InterPro: IPR001406; tRNA-pseudouridine synthase I 1289981..1290709 Helicobacter pylori 35A 12348329 YP_005770356.1 CDS galE NC_017360.1 1290703 1291737 R COG: COG1087; Pfam: PF01370; InterPro: IPR005886; UDP-glucose 4-epimerase complement(1290703..1291737) Helicobacter pylori 35A 12348330 YP_005770357.1 CDS HMPREF4655_21285 NC_017360.1 1292270 1293805 D outer membrane protein 1292270..1293805 Helicobacter pylori 35A 12348333 YP_005770358.1 CDS sdh NC_017360.1 1293827 1294579 D COG: COG4221; Pfam: PF00106; InterPro: IPR002198; serine 3-dehydrogenase 1293827..1294579 Helicobacter pylori 35A 12348334 YP_005770359.1 CDS hcpC NC_017360.1 1295030 1295902 R COG: COG0790; Pfam: PF08238; InterPro: IPR011990; beta-lactamase complement(1295030..1295902) Helicobacter pylori 35A 12348335 YP_005770360.1 CDS eda NC_017360.1 1295972 1296598 R COG: COG0800; Pfam: PF01081; InterPro: IPR013785; 4-hydroxy-2-oxoglutarate aldolase complement(1295972..1296598) Helicobacter pylori 35A 12348336 YP_005770361.1 CDS edd NC_017360.1 1296617 1298443 R COG: COG0129; Pfam: PF00920; InterPro: IPR004786; phosphogluconate dehydratase complement(1296617..1298443) Helicobacter pylori 35A 12348337 YP_005770362.1 CDS zwf NC_017360.1 1298511 1299788 D COG: COG0364; Pfam: PF00479, PF02781; InterPro: IPR001282; glucose-6-phosphate dehydrogenase 1298511..1299788 Helicobacter pylori 35A 12348338 YP_005770363.1 CDS pgl NC_017360.1 1299799 1300482 D COG: COG0363; InterPro: IPR005900; 6-phosphogluconolactonase 1299799..1300482 Helicobacter pylori 35A 12348339 YP_005770364.1 CDS glk NC_017360.1 1300469 1301479 D COG: COG0837; Pfam: PF02685; InterPro: IPR003836; glucokinase 1300469..1301479 Helicobacter pylori 35A 12348340 YP_005770365.1 CDS adhC NC_017360.1 1301640 1302686 D COG: COG1064; Pfam: PF08240, PF00107; InterPro: IPR002085; alcohol dehydrogenase 1301640..1302686 Helicobacter pylori 35A 12348341 YP_005770366.1 CDS HMPREF4655_21294 NC_017360.1 1302698 1303858 R COG: COG1442; Pfam: PF01501; InterPro: IPR002495; LPS biosynthesis protein complement(1302698..1303858) Helicobacter pylori 35A 12348342 YP_005770367.1 CDS HMPREF4655_21295 NC_017360.1 1304046 1305353 D hypothetical protein 1304046..1305353 Helicobacter pylori 35A 12348343 YP_005770368.1 CDS HMPREF4655_21296 NC_017360.1 1305360 1306052 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(1305360..1306052) Helicobacter pylori 35A 12348344 YP_005770369.1 CDS porG NC_017360.1 1306300 1306860 D COG: COG1014; Pfam: PF01558; InterPro: IPR011894; pyruvate synthase subunit PorC 1306300..1306860 Helicobacter pylori 35A 12348345 YP_005770370.1 CDS porD NC_017360.1 1306876 1307268 D COG: COG1144; Pfam: PF00037; InterPro: IPR011898; pyruvate ferredoxin oxidoreductase 1306876..1307268 Helicobacter pylori 35A 12348346 YP_005770371.1 CDS porA NC_017360.1 1307279 1308502 D COG: COG0674; Pfam: PF01855; InterPro: IPR002880; pyruvate ferredoxin oxidoreductase subunit alpha 1307279..1308502 Helicobacter pylori 35A 12348347 YP_005770372.1 CDS porB NC_017360.1 1308515 1309459 D COG: COG1013; Pfam: PF02775; InterPro: IPR011766; pyruvate ferredoxin oxidoreductase subunit beta 1308515..1309459 Helicobacter pylori 35A 12348348 YP_005770373.1 CDS purB NC_017360.1 1309569 1310891 D COG: COG0015; Pfam: PF00206; InterPro: IPR004769; adenylosuccinate lyase 1309569..1310891 Helicobacter pylori 35A 12348349 YP_005770374.1 CDS HMPREF4655_21302 NC_017360.1 1310953 1311786 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 1310953..1311786 Helicobacter pylori 35A 12348350 YP_005770375.1 CDS uvrB NC_017360.1 1311797 1313788 R COG: COG0556; Pfam: PF04851, PF00271, PF02151; InterPro: IPR004807; excision endonuclease subunit UvrB complement(1311797..1313788) Helicobacter pylori 35A 12348351 YP_005770376.1 CDS HMPREF4655_21304 NC_017360.1 1314207 1314347 R hypothetical protein complement(1314207..1314347) Helicobacter pylori 35A 12348352 YP_005770377.1 CDS HMPREF4655_21305 NC_017360.1 1314639 1314785 D hypothetical protein 1314639..1314785 Helicobacter pylori 35A 12348353 YP_005770378.1 CDS HMPREF4655_21306 NC_017360.1 1314936 1315823 R COG: COG0790; Pfam: PF08238; InterPro: IPR011990; cysteine-rich protein X complement(1314936..1315823) Helicobacter pylori 35A 12348354 YP_005770379.1 CDS ggt NC_017360.1 1315970 1317673 R COG: COG0405; Pfam: PF01019; InterPro: IPR000101; gamma-glutamyltranspeptidase complement(1315970..1317673) Helicobacter pylori 35A 12348355 YP_005770380.1 CDS flgK NC_017360.1 1317878 1319698 R COG: COG1256; Pfam: PF06429; InterPro: IPR002371; flagellar hook-associated protein FlgK complement(1317878..1319698) Helicobacter pylori 35A 12348356 YP_005770381.1 CDS HMPREF4655_21309 NC_017360.1 1319700 1320170 R hypothetical protein complement(1319700..1320170) Helicobacter pylori 35A 12348357 YP_005770382.1 CDS bsp6IM NC_017360.1 1320261 1321202 R COG: COG0270; Pfam: PF00145; InterPro: IPR001525; C-5 cytosine-specific DNA methylase complement(1320261..1321202) Helicobacter pylori 35A 12348358 YP_005770383.1 CDS flgM NC_017360.1 1321359 1321589 R Pfam: PF05998; InterPro: IPR009250; negative regulator of flagellin synthesis FlgM complement(1321359..1321589) Helicobacter pylori 35A 12348359 YP_005770384.1 CDS HMPREF4655_21312 NC_017360.1 1321626 1321832 R hypothetical protein complement(1321626..1321832) Helicobacter pylori 35A 12348360 YP_005770385.1 CDS slyD NC_017360.1 1321864 1322421 R COG: COG1047; Pfam: PF00254; InterPro: IPR001179; peptidyl-prolyl cis-trans isomerase complement(1321864..1322421) Helicobacter pylori 35A 12348361 YP_005770386.1 CDS HMPREF4655_21314 NC_017360.1 1322408 1323403 R Pfam: PF07719; hypothetical protein complement(1322408..1323403) Helicobacter pylori 35A 12348362 YP_005770387.1 CDS HMPREF4655_21315 NC_017360.1 1323411 1323950 R COG: COG2885; Pfam: PF00691; InterPro: IPR006665; peptidoglycan associated lipoprotein complement(1323411..1323950) Helicobacter pylori 35A 12348363 YP_005770388.1 CDS tolB NC_017360.1 1324016 1325269 R COG: COG0823; Pfam: PF04052, PF07676; InterPro: IPR014167; translocation protein TolB complement(1324016..1325269) Helicobacter pylori 35A 12348364 YP_005770389.1 CDS HMPREF4655_21317 NC_017360.1 1325266 1326090 R hypothetical protein complement(1325266..1326090) Helicobacter pylori 35A 12348365 YP_005770390.1 CDS HMPREF4655_21318 NC_017360.1 1326109 1326510 R COG: COG0848; Pfam: PF02472; InterPro: IPR003400; TolR colicin import membrane protein complement(1326109..1326510) Helicobacter pylori 35A 12348366 YP_005770391.1 CDS exbB2 NC_017360.1 1326563 1327156 R COG: COG0811; Pfam: PF01618; InterPro: IPR002898; biopolymer transporter complement(1326563..1327156) Helicobacter pylori 35A 12348367 YP_005770392.1 CDS atpC NC_017360.1 1327143 1327514 R COG: COG0355; Pfam: PF02823; InterPro: IPR001469; ATP synthase F1 sector epsilon subunit complement(1327143..1327514) Helicobacter pylori 35A 12348368 YP_005770393.1 CDS atpD NC_017360.1 1327525 1328934 R COG: COG0055; Pfam: PF02874, PF00006, PF00306; InterPro: IPR005722; ATP synthase F1 sector beta subunit complement(1327525..1328934) Helicobacter pylori 35A 12348369 YP_005770394.1 CDS atpG NC_017360.1 1328954 1329859 R COG: COG0224; Pfam: PF00231; InterPro: IPR000131; ATP synthase F1 sector gamma subunit complement(1328954..1329859) Helicobacter pylori 35A 12348370 YP_005770395.1 CDS atpA NC_017360.1 1329874 1331385 R COG: COG0056; Pfam: PF02874, PF00006, PF00306; InterPro: IPR005294; ATP synthase F1 subcomplex subunit alpha complement(1329874..1331385) Helicobacter pylori 35A 12348371 YP_005770396.1 CDS atpH NC_017360.1 1331408 1331950 R ATP synthase F1 sector delta subunit complement(1331408..1331950) Helicobacter pylori 35A 12348372 YP_005770397.1 CDS HMPREF4655_21325 NC_017360.1 1331951 1332466 R COG: COG0711; Pfam: PF00430; ATP synthase subunit B complement(1331951..1332466) Helicobacter pylori 35A 12348373 YP_005770398.1 CDS HMPREF4655_21326 NC_017360.1 1332470 1332904 R Pfam: PF00430; F0F1 ATP synthase subunit B' complement(1332470..1332904) Helicobacter pylori 35A 12348374 YP_005770399.1 CDS spo0J NC_017360.1 1333015 1333887 R COG: COG1475; Pfam: PF02195; InterPro: IPR004437; stage 0 DNA-binding protein complement(1333015..1333887) Helicobacter pylori 35A 12348375 YP_005770400.1 CDS soj NC_017360.1 1333890 1334693 R COG: COG1192; Pfam: PF01656; InterPro: IPR002586; sporulation initiation inhibitor protein Soj complement(1333890..1334693) Helicobacter pylori 35A 12348376 YP_005770401.1 CDS birA NC_017360.1 1334690 1335328 R COG: COG0340; Pfam: PF03099, PF02237; InterPro: IPR004408; biotin--protein ligase complement(1334690..1335328) Helicobacter pylori 35A 12348377 YP_005770402.1 CDS fmt NC_017360.1 1335325 1336275 R COG: COG0223; Pfam: PF00551, PF02911; InterPro: IPR005794; methionyl-tRNA formyltransferase complement(1335325..1336275) Helicobacter pylori 35A 12348378 YP_005770403.1 CDS HMPREF4655_21331 NC_017360.1 1336238 1338826 R Pfam: PF02463; ATPase complement(1336238..1338826) Helicobacter pylori 35A 12348379 YP_005770404.1 CDS HMPREF4655_21332 NC_017360.1 1338868 1340169 R COG: COG4487; hypothetical protein complement(1338868..1340169) Helicobacter pylori 35A 12348380 YP_005770405.1 CDS HMPREF4655_21333 NC_017360.1 1343071 1343190 R hypothetical protein complement(1343071..1343190) Helicobacter pylori 35A 12348382 YP_005770406.1 CDS HMPREF4655_21334 NC_017360.1 1343328 1343459 R hypothetical protein complement(1343328..1343459) Helicobacter pylori 35A 12348383 YP_005770407.1 CDS HMPREF4655_21335 NC_017360.1 1343538 1344128 R hypothetical protein complement(1343538..1344128) Helicobacter pylori 35A 12348384 YP_005770408.1 CDS rplS NC_017360.1 1344415 1344771 R COG: COG0335; Pfam: PF01245; InterPro: IPR001857; 50S ribosomal protein L19 complement(1344415..1344771) Helicobacter pylori 35A 12348385 YP_005770409.1 CDS trmD NC_017360.1 1344793 1345482 R COG: COG0336; Pfam: PF01746; InterPro: IPR002649; tRNA (guanine-N(1)-)-methyltransferase complement(1344793..1345482) Helicobacter pylori 35A 12348386 YP_005770410.1 CDS rimM NC_017360.1 1345483 1346037 R COG: COG0806; Pfam: PF01782, PF05239; InterPro: IPR011961; 16S rRNA processing protein RimM complement(1345483..1346037) Helicobacter pylori 35A 12348387 YP_005770411.1 CDS HMPREF4655_21339 NC_017360.1 1346038 1346385 R COG: COG1837; hypothetical protein complement(1346038..1346385) Helicobacter pylori 35A 12348388 YP_005770412.1 CDS rpsP NC_017360.1 1346402 1346632 R COG: COG0228; Pfam: PF00886; InterPro: IPR000307; 30S ribosomal protein S16 complement(1346402..1346632) Helicobacter pylori 35A 12348389 YP_005770413.1 CDS ffh NC_017360.1 1346704 1348050 R COG: COG0541; Pfam: PF02881, PF00448, PF02978; InterPro: IPR004780; signal recognition particle protein complement(1346704..1348050) Helicobacter pylori 35A 12348390 YP_005770414.1 CDS valS NC_017360.1 1348065 1350683 R COG: COG0525; Pfam: PF00133, PF08264; InterPro: IPR002303; valine--tRNA ligase complement(1348065..1350683) Helicobacter pylori 35A 12348391 YP_005770415.1 CDS HMPREF4655_21343 NC_017360.1 1350820 1351227 D COG: COG1699; Pfam: PF02623; InterPro: IPR003775; flagellar assembly factor FliW 1 1350820..1351227 Helicobacter pylori 35A 12348392 YP_005770416.1 CDS murG NC_017360.1 1351239 1352300 D COG: COG0707; Pfam: PF03033, PF04101; InterPro: IPR006009; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase 1351239..1352300 Helicobacter pylori 35A 12348393 YP_005770417.1 CDS HMPREF4655_21345 NC_017360.1 1352410 1354500 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 1352410..1354500 Helicobacter pylori 35A 12348394 YP_005770418.1 CDS HMPREF4655_21346 NC_017360.1 1354523 1358251 D Pfam: PF01856; InterPro: IPR002718; outer membrane protein 1354523..1358251 Helicobacter pylori 35A 12348395 YP_005770419.1 CDS proC NC_017360.1 1358265 1359059 D COG: COG0345; Pfam: PF03807; InterPro: IPR000304; pyrroline-5-carboxylate reductase 1358265..1359059 Helicobacter pylori 35A 12348396 YP_005770420.1 CDS fic NC_017360.1 1359065 1359598 D COG: COG2184; Pfam: PF02661; InterPro: IPR003812; cell filamentation protein 1359065..1359598 Helicobacter pylori 35A 12348397 YP_005770421.1 CDS HMPREF4655_21349 NC_017360.1 1359613 1360377 R hypothetical protein complement(1359613..1360377) Helicobacter pylori 35A 12348398 YP_005770422.1 CDS HMPREF4655_21350 NC_017360.1 1360395 1360787 R hypothetical protein complement(1360395..1360787) Helicobacter pylori 35A 12348399 YP_005770423.1 CDS HMPREF4655_21351 NC_017360.1 1360947 1361375 R COG: COG0319; Pfam: PF02130; InterPro: IPR002036; metalloprotease complement(1360947..1361375) Helicobacter pylori 35A 12348400 YP_005770424.1 CDS HMPREF4655_21352 NC_017360.1 1361429 1361923 R COG: COG0716; Pfam: PF00258; InterPro: IPR010086; flavodoxin complement(1361429..1361923) Helicobacter pylori 35A 12348401 YP_005770425.1 CDS HMPREF4655_21353 NC_017360.1 1362014 1362628 R COG: COG0586; DedA family protein complement(1362014..1362628) Helicobacter pylori 35A 12348402 YP_005770426.1 CDS ccoS NC_017360.1 1362729 1362920 D COG: COG3197; Pfam: PF03597; InterPro: IPR004714; cytochrome oxidase maturation protein 1362729..1362920 Helicobacter pylori 35A 12348403 YP_005770427.1 CDS trxB2 NC_017360.1 1362946 1363914 D COG: COG0492; Pfam: PF00890, PF00070; pyridine nucleotide-disulfide oxidoreductase 1362946..1363914 Helicobacter pylori 35A 12348404 YP_005770428.1 CDS HMPREF4655_21356 NC_017360.1 1363928 1365088 R COG: COG0477; Pfam: PF07690; InterPro: IPR011701; MccC family protein complement(1363928..1365088) Helicobacter pylori 35A 12348405 YP_005770429.1 CDS pgi NC_017360.1 1365151 1366788 D COG: COG0166; Pfam: PF00342; InterPro: IPR001672; glucose-6-phosphate isomerase 1365151..1366788 Helicobacter pylori 35A 12348406 YP_005770430.1 CDS hofH NC_017360.1 1367095 1368510 D Pfam: PF02521; InterPro: IPR003678; hof-family outer membrane protein 1367095..1368510 Helicobacter pylori 35A 12348407 YP_005770431.1 CDS cstA NC_017360.1 1368816 1370909 R COG: COG1966; Pfam: PF02554; InterPro: IPR003706; carbon starvation protein A complement(1368816..1370909) Helicobacter pylori 35A 12348408 YP_005770432.1 CDS HMPREF4655_21360 NC_017360.1 1371090 1371743 D COG: COG0765; Pfam: PF00528; InterPro: IPR000515; ABC superfamily ATP binding cassette transporter, permease protein 1371090..1371743 Helicobacter pylori 35A 12348409 YP_005770433.1 CDS HMPREF4655_21361 NC_017360.1 1371746 1372417 D COG: COG0765; Pfam: PF00528; InterPro: IPR000515; ABC superfamily ATP binding cassette transporter, membrane protein 1371746..1372417 Helicobacter pylori 35A 12348410 YP_005770434.1 CDS HMPREF4655_21362 NC_017360.1 1372419 1373165 D COG: COG1126; Pfam: PF00005; InterPro: IPR003439; ABC superfamily ATP binding cassette transporter, ABC protein 1372419..1373165 Helicobacter pylori 35A 12348411 YP_005770435.1 CDS HMPREF4655_21363 NC_017360.1 1373184 1374047 D COG: COG0834; Pfam: PF00497; InterPro: IPR001638; ABC superfamily ATP binding cassette transporter, binding protein 1373184..1374047 Helicobacter pylori 35A 12348412 YP_005770436.1 CDS HMPREF4655_21364 NC_017360.1 1374168 1374719 D hypothetical protein 1374168..1374719 Helicobacter pylori 35A 12348413 YP_005770437.1 CDS gluP NC_017360.1 1374942 1376165 R COG: COG0738; Pfam: PF07690; InterPro: IPR011701; glucose/galactose transporter complement(1374942..1376165) Helicobacter pylori 35A 12348414 YP_005770438.1 CDS hpt NC_017360.1 1376295 1377602 R COG: COG2252; Pfam: PF00860; InterPro: IPR006043; hypoxanthine phosphoribosyltransferase complement(1376295..1377602) Helicobacter pylori 35A 12348415 YP_005770439.1 CDS HMPREF4655_21367 NC_017360.1 1378053 1379975 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(1378053..1379975) Helicobacter pylori 35A 12348416 YP_005770440.1 CDS HMPREF4655_21368 NC_017360.1 1380105 1380365 R hypothetical protein complement(1380105..1380365) Helicobacter pylori 35A 12348417 YP_005770441.1 CDS deoD NC_017360.1 1380455 1381156 R COG: COG0813; Pfam: PF01048; InterPro: IPR000845; purine-nucleoside phosphorylase complement(1380455..1381156) Helicobacter pylori 35A 12348418 YP_005770442.1 CDS deoB NC_017360.1 1381153 1382394 R COG: COG1015; Pfam: PF08342, PF01676; InterPro: IPR010045; phosphopentomutase complement(1381153..1382394) Helicobacter pylori 35A 12348419 YP_005770443.1 CDS nupC NC_017360.1 1382406 1383662 R COG: COG1972; Pfam: PF01773, PF07670, PF07662; InterPro: IPR008276; CNT family concentrative nucleoside transporter complement(1382406..1383662) Helicobacter pylori 35A 12348420 YP_005770444.1 CDS HMPREF4655_21372 NC_017360.1 1383989 1385320 D COG: COG0477; Pfam: PF07690; InterPro: IPR011701; multidrug-efflux transporter 1383989..1385320 Helicobacter pylori 35A 12348422 YP_005770445.1 CDS HMPREF4655_21373 NC_017360.1 1385338 1386099 D COG: COG0037; Pfam: PF01171; InterPro: IPR014729; PP-loop family protein 1385338..1386099 Helicobacter pylori 35A 12348423 YP_005770446.1 CDS napA NC_017360.1 1386109 1387260 R COG: COG0475; Pfam: PF00999; InterPro: IPR006153; periplasmic nitrate reductase NapA complement(1386109..1387260) Helicobacter pylori 35A 12348424 YP_005770447.1 CDS HMPREF4655_21375 NC_017360.1 1387286 1388665 R COG: COG0534; Pfam: PF01554; InterPro: IPR002528; hypothetical protein complement(1387286..1388665) Helicobacter pylori 35A 12348425 YP_005770448.1 CDS HMPREF4655_21376 NC_017360.1 1388825 1390000 R COG: COG2814; Pfam: PF07690; InterPro: IPR011701; major facilitator family transporter complement(1388825..1390000) Helicobacter pylori 35A 12348426 YP_005770449.1 CDS cah NC_017360.1 1390277 1391020 D COG: COG3338; Pfam: PF00194; InterPro: IPR001148; carbonate dehydratase 1390277..1391020 Helicobacter pylori 35A 12348427 YP_005770450.1 CDS HMPREF4655_21378 NC_017360.1 1391254 1392264 R Pfam: PF05917; InterPro: IPR008592; hypothetical protein complement(1391254..1392264) Helicobacter pylori 35A 12348428 YP_005770451.1 CDS asd NC_017360.1 1392694 1393734 R COG: COG0136; Pfam: PF01118, PF02774; InterPro: IPR005986; aspartate-semialdehyde dehydrogenase complement(1392694..1393734) Helicobacter pylori 35A 12348429 YP_005770452.1 CDS hisS NC_017360.1 1393721 1395049 R COG: COG0124; Pfam: PF00587, PF03129; InterPro: IPR015805; histidine--tRNA ligase complement(1393721..1395049) Helicobacter pylori 35A 12348430 YP_005770453.1 CDS rfaF NC_017360.1 1395111 1396160 D COG: COG0859; Pfam: PF01075; InterPro: IPR011910; heptosyltransferase II (RfaF) 1395111..1396160 Helicobacter pylori 35A 12348431 YP_005770454.1 CDS HMPREF4655_21382 NC_017360.1 1396354 1396572 R secreted protein complement(1396354..1396572) Helicobacter pylori 35A 12348432 YP_005770455.1 CDS HMPREF4655_21383 NC_017360.1 1396690 1396869 D hypothetical protein 1396690..1396869 Helicobacter pylori 35A 12348433 YP_005770456.1 CDS fusA NC_017360.1 1397089 1399167 R COG: COG0480; Pfam: PF00009, PF03144, PF03764, PF00679; InterPro: IPR004540; elongation factor G complement(1397089..1399167) Helicobacter pylori 35A 12348434 YP_005770457.1 CDS rpsG NC_017360.1 1399179 1399646 R COG: COG0049; Pfam: PF00177; InterPro: IPR000235; 30S ribosomal protein S7 complement(1399179..1399646) Helicobacter pylori 35A 12348435 YP_005770458.1 CDS rpsL NC_017360.1 1399662 1400069 R COG: COG0048; Pfam: PF00164; InterPro: IPR012340; 30S ribosomal protein S12 complement(1399662..1400069) Helicobacter pylori 35A 12348436 YP_005770459.1 CDS rpoBC NC_017360.1 1400157 1408829 R COG: COG0086; Pfam: PF04563, PF04561, PF04565, PF00562, PF04560, PF04997, PF00623, PF04983, PF05000, PF04998; InterPro: IPR012754; DNA-directed RNA polymerase complement(1400157..1408829) Helicobacter pylori 35A 12348437 YP_005770460.1 CDS rplL NC_017360.1 1409052 1409429 R COG: COG0222; Pfam: PF00542; InterPro: IPR000206; 50S ribosomal protein L7/L12 complement(1409052..1409429) Helicobacter pylori 35A 12348438 YP_005770461.1 CDS rplJ NC_017360.1 1409474 1409968 R COG: COG0244; Pfam: PF00466; InterPro: IPR001790; 50S ribosomal protein L10 complement(1409474..1409968) Helicobacter pylori 35A 12348439 YP_005770462.1 CDS rplA NC_017360.1 1410077 1410781 R COG: COG0081; Pfam: PF00687; InterPro: IPR005878; 50S ribosomal protein L1 complement(1410077..1410781) Helicobacter pylori 35A 12348440 YP_005770463.1 CDS rplK NC_017360.1 1410826 1411251 R COG: COG0080; Pfam: PF03946, PF00298; InterPro: IPR006519; 50S ribosomal protein L11 complement(1410826..1411251) Helicobacter pylori 35A 12348441 YP_005770464.1 CDS nusG NC_017360.1 1411269 1411802 R COG: COG0250; Pfam: PF02357, PF00467; InterPro: IPR001062; transcription termination/antitermination factor NusG complement(1411269..1411802) Helicobacter pylori 35A 12348442 YP_005770465.1 CDS secE NC_017360.1 1411827 1412006 R preprotein translocase complement(1411827..1412006) Helicobacter pylori 35A 12348443 YP_005770466.1 CDS rpmG NC_017360.1 1412264 1412422 R COG: COG0267; Pfam: PF00471; InterPro: IPR001705; 50S ribosomal protein L33 complement(1412264..1412422) Helicobacter pylori 35A 12348445 YP_005770467.1 CDS tuf NC_017360.1 1412456 1413655 R COG: COG0050; Pfam: PF00009, PF03144, PF03143; InterPro: IPR004541; translation elongation factor Tu complement(1412456..1413655) Helicobacter pylori 35A 12348446 YP_005770468.1 CDS wlaB NC_017360.1 1414362 1416098 D COG: COG1132; Pfam: PF00005; InterPro: IPR003593; ABC superfamily ATP binding cassette transporter, ABC/membrane protein 1414362..1416098 Helicobacter pylori 35A 12348451 YP_005770469.1 CDS HMPREF4655_21397 NC_017360.1 1416107 1416775 R Pfam: PF00702; InterPro: IPR005834; hypothetical protein complement(1416107..1416775) Helicobacter pylori 35A 12348452 YP_005770470.1 CDS nlaIIIM NC_017360.1 1416879 1417934 R COG: COG3392; Pfam: PF02086; InterPro: IPR012327; site-specific DNA-methyltransferase (adenine-specific) complement(1416879..1417934) Helicobacter pylori 35A 12348454 YP_005770471.1 CDS iceA2 NC_017360.1 1418183 1418362 R Pfam: PF05862; InterPro: IPR008655; IceA2 protein complement(1418183..1418362) Helicobacter pylori 35A 12348455 YP_005770472.1 CDS cysE NC_017360.1 1418583 1419098 R COG: COG1045; Pfam: PF00132; InterPro: IPR005881; serine O-acetyltransferase complement(1418583..1419098) Helicobacter pylori 35A 12348456 YP_005770473.1 CDS HMPREF4655_21401 NC_017360.1 1419139 1419258 R hypothetical protein complement(1419139..1419258) Helicobacter pylori 35A 12348458 YP_005770474.1 CDS atpE NC_017360.1 1419765 1420082 R COG: COG0636; Pfam: PF00137; InterPro: IPR002379; ATP synthase F0 subunit C complement(1419765..1420082) Helicobacter pylori 35A 12348464 YP_005770475.1 CDS HMPREF4655_21403 NC_017360.1 1420460 1420729 D hypothetical protein 1420460..1420729 Helicobacter pylori 35A 12348465 YP_005770476.1 CDS HMPREF4655_21404 NC_017360.1 1420914 1421522 D hypothetical protein 1420914..1421522 Helicobacter pylori 35A 12348466 YP_005770477.1 CDS pnp NC_017360.1 1421558 1423624 R COG: COG1185; Pfam: PF01138, PF03725, PF03726, PF00013, PF00575; InterPro: IPR012162; polyribonucleotide nucleotidyltransferase complement(1421558..1423624) Helicobacter pylori 35A 12348467 YP_005770478.1 CDS HMPREF4655_21406 NC_017360.1 1423627 1424349 R COG: COG1926; hypothetical protein complement(1423627..1424349) Helicobacter pylori 35A 12348468 YP_005770479.1 CDS ostA NC_017360.1 1424346 1426607 R COG: COG1452; Pfam: PF04453; InterPro: IPR007543; organic solvent tolerance protein complement(1424346..1426607) Helicobacter pylori 35A 12348469 YP_005770480.1 CDS HMPREF4655_21408 NC_017360.1 1426610 1427089 R hypothetical protein complement(1426610..1427089) Helicobacter pylori 35A 12348470 YP_005770481.1 CDS purD NC_017360.1 1427131 1428405 R COG: COG0151; Pfam: PF02844, PF01071, PF02843; InterPro: IPR000115; phosphoribosylamine--glycine ligase complement(1427131..1428405) Helicobacter pylori 35A 12348472 YP_005770482.1 CDS HMPREF4655_21410 NC_017360.1 1428524 1428715 D hypothetical protein 1428524..1428715 Helicobacter pylori 35A 12348474 YP_005770483.1 CDS skfE NC_017360.1 1428717 1429403 R COG: COG1131; Pfam: PF00005; InterPro: IPR003439; ABC superfamily ATP binding cassette transporter, ABC protein (yhcG) complement(1428717..1429403) Helicobacter pylori 35A 12348475 YP_005770484.1 CDS uppS NC_017360.1 1429397 1430101 R COG: COG0020; Pfam: PF01255; InterPro: IPR001441; Di-trans,poly-cis-decaprenylcistransferase complement(1429397..1430101) Helicobacter pylori 35A 12348476 YP_005770485.1 CDS dld NC_017360.1 1430141 1432981 R COG: COG0277; Pfam: PF01565, PF02913, PF00037; InterPro: IPR004113; oxidoreductase complement(1430141..1432981) Helicobacter pylori 35A 12348477 YP_005770486.1 CDS HMPREF4655_21414 NC_017360.1 1433053 1433385 D COG: COG0607; Pfam: PF00581; InterPro: IPR001763; hypothetical protein 1433053..1433385 Helicobacter pylori 35A 12348478 YP_005770487.1 CDS hemD NC_017360.1 1433388 1434068 D COG: COG1587; Pfam: PF02602; InterPro: IPR003754; uroporphyrinogen-III synthase 1433388..1434068 Helicobacter pylori 35A 12348479 YP_005770488.1 CDS crcB NC_017360.1 1434115 1434507 D COG: COG0239; Pfam: PF02537; InterPro: IPR003691; camphor resistance protein CrcB 1434115..1434507 Helicobacter pylori 35A 12348480 YP_005770489.1 CDS HMPREF4655_21417 NC_017360.1 1434550 1435602 R COG: COG0635; Pfam: PF04055, PF06969; InterPro: IPR004559; coproporphyrinogen dehydrogenase complement(1434550..1435602) Helicobacter pylori 35A 12348481 YP_005770490.1 CDS HMPREF4655_21418 NC_017360.1 1435668 1435973 D COG: COG2863; Pfam: PF00034; InterPro: IPR009056; cytochrome c-553 1435668..1435973 Helicobacter pylori 35A 12348482 YP_005770491.1 CDS nidH NC_017360.1 1436133 1436606 D COG: COG0494; Pfam: PF00293; InterPro: IPR000086; dinucleoside polyphosphate hydrolase 1436133..1436606 Helicobacter pylori 35A 12348483 YP_005770492.1 CDS lysC NC_017360.1 1436600 1437817 D COG: COG0527; Pfam: PF00696, PF01842; InterPro: IPR005260; aspartate kinase 1436600..1437817 Helicobacter pylori 35A 12348484 YP_005770493.1 CDS HMPREF4655_21421 NC_017360.1 1437814 1438356 D hypothetical protein 1437814..1438356 Helicobacter pylori 35A 12348485 YP_005770494.1 CDS holB NC_017360.1 1438353 1439009 D DNA-directed DNA polymerase III subunit delta' 1438353..1439009 Helicobacter pylori 35A 12348486 YP_005770495.1 CDS folP NC_017360.1 1439006 1440148 D COG: COG0294; Pfam: PF00809; InterPro: IPR000489; dihydropteroate synthase 1439006..1440148 Helicobacter pylori 35A 12348487 YP_005770496.1 CDS HMPREF4655_21424 NC_017360.1 1440173 1440634 R hypothetical protein complement(1440173..1440634) Helicobacter pylori 35A 12348488 YP_005770497.1 CDS HMPREF4655_21425 NC_017360.1 1441022 1441918 D COG: COG0697; Pfam: PF00892; InterPro: IPR000620; hypothetical protein 1441022..1441918 Helicobacter pylori 35A 12348489 YP_005770498.1 CDS HMPREF4655_21426 NC_017360.1 1441922 1443169 D hypothetical protein 1441922..1443169 Helicobacter pylori 35A 12348490 YP_005770499.1 CDS HMPREF4655_21427 NC_017360.1 1443248 1443799 D COG: COG2952; Pfam: PF04368; InterPro: IPR007463; hypothetical protein 1443248..1443799 Helicobacter pylori 35A 12348491 YP_005770500.1 CDS carA NC_017360.1 1443799 1444926 D COG: COG0505; Pfam: PF00988, PF00117; InterPro: IPR006274; carbamoyl-phosphate synthase small subunit 1443799..1444926 Helicobacter pylori 35A 12348492 YP_005770501.1 CDS amiF NC_017360.1 1445093 1446097 D COG: COG0388; Pfam: PF00795; InterPro: IPR003010; formamidase 1445093..1446097 Helicobacter pylori 35A 12348493 YP_005770502.1 CDS HMPREF4655_21430 NC_017360.1 1446233 1446433 R hypothetical protein complement(1446233..1446433) Helicobacter pylori 35A 12348494 YP_005770503.1 CDS maf2 NC_017360.1 1446553 1447125 R COG: COG0424; Pfam: PF02545; InterPro: IPR003697; septum formation protein Maf complement(1446553..1447125) Helicobacter pylori 35A 12348495 YP_005770504.1 CDS alaS NC_017360.1 1447127 1449670 R COG: COG0013; Pfam: PF01411, PF07973, PF02272; InterPro: IPR002318; alanine--tRNA ligase complement(1447127..1449670) Helicobacter pylori 35A 12348496 YP_005770505.1 CDS HMPREF4655_21433 NC_017360.1 1449790 1450020 D COG: COG2841; Pfam: PF04325; InterPro: IPR007420; hypothetical protein (DUF465) family protein 1449790..1450020 Helicobacter pylori 35A 12348497 YP_005770506.1 CDS HMPREF4655_21434 NC_017360.1 1450249 1450389 D hypothetical protein 1450249..1450389 Helicobacter pylori 35A 12348498 YP_005770507.1 CDS HMPREF4655_21435 NC_017360.1 1450631 1452751 R Pfam: PF01856; InterPro: IPR002718; outer membrane protein complement(1450631..1452751) Helicobacter pylori 35A 12348499 YP_005770508.1 CDS rpsR NC_017360.1 1453023 1453280 R COG: COG0238; Pfam: PF01084; InterPro: IPR001648; 30S ribosomal protein S18 complement(1453023..1453280) Helicobacter pylori 35A 12348500 YP_005770509.1 CDS ssb NC_017360.1 1453304 1453849 R COG: COG0629; Pfam: PF00436; InterPro: IPR011344; single-strand binding protein complement(1453304..1453849) Helicobacter pylori 35A 12348501 YP_005770510.1 CDS rpsF NC_017360.1 1453859 1454335 R COG: COG0360; Pfam: PF01250; InterPro: IPR014717; 30S ribosomal protein S6 complement(1453859..1454335) Helicobacter pylori 35A 12348502 YP_005770511.1 CDS HMPREF4655_21439 NC_017360.1 1454430 1455452 R COG: COG1466; Pfam: PF06144; DNA polymerase III subunit delta complement(1454430..1455452) Helicobacter pylori 35A 12348503 YP_005770512.1 CDS HMPREF4655_21440 NC_017360.1 1455442 1457376 R COG: COG0557; Pfam: PF00773; InterPro: IPR004476; 3'-5' exoribonuclease R complement(1455442..1457376) Helicobacter pylori 35A 12348504 YP_005770513.1 CDS aroE NC_017360.1 1457376 1458167 R COG: COG0169; Pfam: PF08501, PF01488; InterPro: IPR011342; shikimate dehydrogenase complement(1457376..1458167) Helicobacter pylori 35A 12348505 YP_005770514.1 CDS HMPREF4655_21442 NC_017360.1 1458175 1458777 R Pfam: PF08239; InterPro: IPR003646; bacterial SH3 domain protein complement(1458175..1458777) Helicobacter pylori 35A 12348506 YP_005770515.1 CDS HMPREF4655_21443 NC_017360.1 1458786 1459832 R COG: COG4174; Pfam: PF00528; InterPro: IPR000515; oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein complement(1458786..1459832) Helicobacter pylori 35A 12348507 YP_005770516.1 CDS oppA NC_017360.1 1459829 1461610 R COG: COG4166; Pfam: PF00496; InterPro: IPR000914; oligopeptide ABC superfamily ATP binding cassette transporter periplasmic oligopeptide-binding protein complement(1459829..1461610) Helicobacter pylori 35A 12348508 YP_005770517.1 CDS trpS NC_017360.1 1461611 1462591 R COG: COG0180; Pfam: PF00579; InterPro: IPR002306; tryptophan--tRNA ligase complement(1461611..1462591) Helicobacter pylori 35A 12348509 YP_005770518.1 CDS bioC NC_017360.1 1462663 1463391 R COG: COG0500; Pfam: PF08241; InterPro: IPR011814; biotin biosynthesis protein BioC complement(1462663..1463391) Helicobacter pylori 35A 12348510 YP_005770519.1 CDS secG NC_017360.1 1463509 1464111 D COG: COG1314; Pfam: PF03840; InterPro: IPR004692; preprotein translocase subunit SecG 1463509..1464111 Helicobacter pylori 35A 12348511 YP_005770520.1 CDS frr NC_017360.1 1464111 1464668 D COG: COG0233; Pfam: PF01765; InterPro: IPR015998; ribosome recycling factor 1464111..1464668 Helicobacter pylori 35A 12348512 YP_005770521.1 CDS pyrE2 NC_017360.1 1464672 1465277 D COG: COG0461; Pfam: PF00156; InterPro: IPR006273; orotate phosphoribosyltransferase 1464672..1465277 Helicobacter pylori 35A 12348513 YP_005770522.1 CDS HMPREF4655_21450 NC_017360.1 1465267 1465731 D COG: COG1714; Pfam: PF06271; InterPro: IPR010432; hypothetical protein 1465267..1465731 Helicobacter pylori 35A 12348514 YP_005770523.1 CDS HMPREF4655_21451 NC_017360.1 1465728 1466417 D COG: COG0846; Pfam: PF02146; InterPro: IPR003000; NAD-dependent deacetylase 1465728..1466417 Helicobacter pylori 35A 12348515 YP_005770524.1 CDS nuoA NC_017360.1 1466520 1466921 D COG: COG0838; Pfam: PF00507; InterPro: IPR000440; NADH-quinone oxidoreductase subunit A 1466520..1466921 Helicobacter pylori 35A 12348516 YP_005770525.1 CDS nuoB NC_017360.1 1466921 1467400 D COG: COG0377; Pfam: PF01058; InterPro: IPR014406; NADH-quinone oxidoreductase subunit B 1466921..1467400 Helicobacter pylori 35A 12348517 YP_005770526.1 CDS nuoC NC_017360.1 1467400 1468197 D COG: COG0852; Pfam: PF00329; InterPro: IPR010218; NADH-quinone oxidoreductase subunit C 1467400..1468197 Helicobacter pylori 35A 12348518 YP_005770527.1 CDS nuoD NC_017360.1 1468199 1469428 D COG: COG0649; Pfam: PF00346; InterPro: IPR010219; NADH-quinone oxidoreductase subunit D 1468199..1469428 Helicobacter pylori 35A 12348519 YP_005770528.1 CDS nuoE NC_017360.1 1469425 1469655 D NADH-quinone oxidoreductase subunit E 1469425..1469655 Helicobacter pylori 35A 12348520 YP_005770529.1 CDS nuoF NC_017360.1 1469658 1470644 D NADH-quinone oxidoreductase subunit F 1469658..1470644 Helicobacter pylori 35A 12348521 YP_005770530.1 CDS nqoG NC_017360.1 1470641 1473175 D COG: COG1034; Pfam: PF00111, PF00037; InterPro: IPR001041; NADH-ubiquinone oxidoreductase subunit G 1470641..1473175 Helicobacter pylori 35A 12348522 YP_005770531.1 CDS nuoH NC_017360.1 1473172 1474161 D COG: COG1005; Pfam: PF00146; InterPro: IPR001694; NADH-quinone oxidoreductase subunit H 1473172..1474161 Helicobacter pylori 35A 12348523 YP_005770532.1 CDS nuoI NC_017360.1 1474172 1474834 D COG: COG1143; Pfam: PF00037; InterPro: IPR010226; NADH-quinone oxidoreductase subunit I 1474172..1474834 Helicobacter pylori 35A 12348524 YP_005770533.1 CDS nqoJ NC_017360.1 1474821 1475375 D COG: COG0839; Pfam: PF00499; InterPro: IPR001457; NADH-ubiquinone oxidoreductase subunit J 1474821..1475375 Helicobacter pylori 35A 12348525 YP_005770534.1 CDS nuoK NC_017360.1 1475372 1475674 D COG: COG0713; Pfam: PF00420; InterPro: IPR001133; NADH-quinone oxidoreductase subunit K 1475372..1475674 Helicobacter pylori 35A 12348526 YP_005770535.1 CDS nuoL NC_017360.1 1475677 1477515 D COG: COG1009; Pfam: PF00662, PF00361, PF06455; InterPro: IPR003945; NADH-quinone oxidoreductase subunit L 1475677..1477515 Helicobacter pylori 35A 12348527 YP_005770536.1 CDS nuoM NC_017360.1 1477519 1479057 D COG: COG1008; Pfam: PF00361; InterPro: IPR010227; NADH-quinone oxidoreductase subunit M 1477519..1479057 Helicobacter pylori 35A 12348528 YP_005770537.1 CDS nqoN NC_017360.1 1479044 1480516 D COG: COG1007; Pfam: PF00361; InterPro: IPR010096; NADH-ubiquinone oxidoreductase subunit N 1479044..1480516 Helicobacter pylori 35A 12348529 YP_005770538.1 CDS pflA NC_017360.1 1480506 1482917 D Pfam: PF07719; paralysed flagella protein 1480506..1482917 Helicobacter pylori 35A 12348530 YP_005770539.1 CDS algC NC_017360.1 1482919 1484295 D COG: COG1109; Pfam: PF02878, PF02879, PF02880, PF00408; InterPro: IPR016055; phosphomannomutase 1482919..1484295 Helicobacter pylori 35A 12348531 YP_005770540.1 CDS HMPREF4655_21468 NC_017360.1 1484409 1484576 D hypothetical protein 1484409..1484576 Helicobacter pylori 35A 12348532 YP_005770541.1 CDS HMPREF4655_21469 NC_017360.1 1484672 1484806 D hypothetical protein 1484672..1484806 Helicobacter pylori 35A 12348533 YP_005770542.1 CDS trpA NC_017360.1 1485039 1485827 R COG: COG0159; Pfam: PF00290; InterPro: IPR013785; tryptophan synthase subunit alpha complement(1485039..1485827) Helicobacter pylori 35A 12348534 YP_005770543.1 CDS trpB NC_017360.1 1485824 1487005 R COG: COG0133; Pfam: PF00291; InterPro: IPR006654; tryptophan synthase subunit beta complement(1485824..1487005) Helicobacter pylori 35A 12348535 YP_005770544.1 CDS trpC2 NC_017360.1 1487007 1488365 R COG: COG0134; Pfam: PF00218, PF00697; InterPro: IPR013785; Indole-3-glycerol phosphate synthase complement(1487007..1488365) Helicobacter pylori 35A 12348536 YP_005770545.1 CDS trpD NC_017360.1 1488358 1489365 R COG: COG0547; Pfam: PF02885, PF00591; InterPro: IPR005940; anthranilate phosphoribosyltransferase complement(1488358..1489365) Helicobacter pylori 35A 12348537 YP_005770546.1 CDS trpG NC_017360.1 1489362 1489946 R COG: COG0512; Pfam: PF00117; InterPro: IPR006221; anthranilate synthase component II complement(1489362..1489946) Helicobacter pylori 35A 12348538 YP_005770547.1 CDS trpE NC_017360.1 1489943 1491502 R COG: COG0147; Pfam: PF04715, PF00425; InterPro: IPR005801; anthranilate synthase component I TrpE complement(1489943..1491502) Helicobacter pylori 35A 12348539 YP_005770548.1 CDS HMPREF4655_21476 NC_017360.1 1491673 1492731 R COG: COG0859; heptosyltransferase III complement(1491673..1492731) Helicobacter pylori 35A 12348540 YP_005770549.1 CDS HMPREF4655_21477 NC_017360.1 1492798 1493535 R COG: COG2503; Pfam: PF03767; InterPro: IPR006423; lipoprotein e(P4) family 5'-nucleotidase complement(1492798..1493535) Helicobacter pylori 35A 12348541 YP_005770550.1 CDS HMPREF4655_21478 NC_017360.1 1493660 1494208 D COG: COG2353; Pfam: PF04264; InterPro: IPR007372; hypothetical protein 1493660..1494208 Helicobacter pylori 35A 12348542 YP_005770551.1 CDS tenA NC_017360.1 1494789 1495445 D COG: COG0819; Pfam: PF03070; InterPro: IPR016084; thiaminase 1494789..1495445 Helicobacter pylori 35A 12348543 YP_005770552.1 CDS pnuC NC_017360.1 1495567 1496229 D COG: COG3201; Pfam: PF04973; InterPro: IPR006419; nicotinamide mononucleotide transporter 1495567..1496229 Helicobacter pylori 35A 12348544 YP_005770553.1 CDS HMPREF4655_21481 NC_017360.1 1496217 1496831 D COG: COG1564; Pfam: PF04263; InterPro: IPR006282; thiamine diphosphokinase 1496217..1496831 Helicobacter pylori 35A 12348545 YP_005770554.1 CDS rplQ NC_017360.1 1497327 1497677 R COG: COG0203; Pfam: PF01196; InterPro: IPR000456; 50S ribosomal protein L17 complement(1497327..1497677) Helicobacter pylori 35A 12348546 YP_005770555.1 CDS rpoA NC_017360.1 1497677 1498711 R COG: COG0202; Pfam: PF01193, PF01000, PF03118; InterPro: IPR011773; DNA-directed RNA polymerase subunit alpha complement(1497677..1498711) Helicobacter pylori 35A 12348547 YP_005770556.1 CDS rpsD NC_017360.1 1498723 1499349 R COG: COG0522; Pfam: PF00163, PF01479; InterPro: IPR005709; 30S ribosomal protein S4 complement(1498723..1499349) Helicobacter pylori 35A 12348548 YP_005770557.1 CDS rpsK NC_017360.1 1499359 1499754 R COG: COG0100; Pfam: PF00411; InterPro: IPR001971; 30S ribosomal protein S11 complement(1499359..1499754) Helicobacter pylori 35A 12348549 YP_005770558.1 CDS rpsM NC_017360.1 1499777 1500139 R COG: COG0099; Pfam: PF00416; InterPro: IPR001892; 30S ribosomal protein S13 complement(1499777..1500139) Helicobacter pylori 35A 12348550 YP_005770559.1 CDS rpmJ NC_017360.1 1500143 1500256 R Pfam: PF00444; InterPro: IPR000473; 50S ribosomal protein L36 complement(1500143..1500256) Helicobacter pylori 35A 12348551 YP_005770560.1 CDS infA NC_017360.1 1500335 1500553 R COG: COG0361; Pfam: PF01176; InterPro: IPR012340; translation initiation factor IF-1 complement(1500335..1500553) Helicobacter pylori 35A 12348552 YP_005770561.1 CDS map NC_017360.1 1500553 1501314 R COG: COG0024; Pfam: PF00557; InterPro: IPR002467; methionyl aminopeptidase complement(1500553..1501314) Helicobacter pylori 35A 12348553 YP_005770562.1 CDS secY NC_017360.1 1501314 1502576 R COG: COG0201; Pfam: PF00344; InterPro: IPR002208; preprotein translocase subunit SecY complement(1501314..1502576) Helicobacter pylori 35A 12348554 YP_005770563.1 CDS rplO NC_017360.1 1502614 1503021 R COG: COG0200; Pfam: PF01305; InterPro: IPR005749; 50S ribosomal protein L15 complement(1502614..1503021) Helicobacter pylori 35A 12348555 YP_005770564.1 CDS rpsE NC_017360.1 1503033 1503494 R COG: COG0098; Pfam: PF00333, PF03719; InterPro: IPR000851; 30S ribosomal protein S5 complement(1503033..1503494) Helicobacter pylori 35A 12348556 YP_005770565.1 CDS rplR NC_017360.1 1503491 1503847 R COG: COG0256; Pfam: PF00861; InterPro: IPR005484; 50S ribosomal protein L18 complement(1503491..1503847) Helicobacter pylori 35A 12348557 YP_005770566.1 CDS rplF NC_017360.1 1503861 1504397 R COG: COG0097; Pfam: PF00347; InterPro: IPR000702; 50S ribosomal protein L6 complement(1503861..1504397) Helicobacter pylori 35A 12348558 YP_005770567.1 CDS rpsH NC_017360.1 1504408 1504803 R COG: COG0096; Pfam: PF00410; InterPro: IPR000630; 30S ribosomal protein S8 complement(1504408..1504803) Helicobacter pylori 35A 12348559 YP_005770568.1 CDS rpsN NC_017360.1 1504813 1504998 R COG: COG0199; Pfam: PF00253; InterPro: IPR001209; 30S ribosomal protein S14 complement(1504813..1504998) Helicobacter pylori 35A 12348560 YP_005770569.1 CDS rplE NC_017360.1 1505008 1505553 R COG: COG0094; Pfam: PF00281, PF00673; InterPro: IPR002132; 50S ribosomal protein L5 complement(1505008..1505553) Helicobacter pylori 35A 12348561 YP_005770570.1 CDS rplX NC_017360.1 1505566 1505787 R COG: COG0198; Pfam: PF00467; InterPro: IPR003256; 50S ribosomal protein L24 complement(1505566..1505787) Helicobacter pylori 35A 12348562 YP_005770571.1 CDS rplN NC_017360.1 1505787 1506155 R COG: COG0093; Pfam: PF00238; InterPro: IPR005745; 50S ribosomal protein L14 complement(1505787..1506155) Helicobacter pylori 35A 12348563 YP_005770572.1 CDS rpsQ NC_017360.1 1506158 1506418 R COG: COG0186; Pfam: PF00366; InterPro: IPR012340; 30S ribosomal protein S17 complement(1506158..1506418) Helicobacter pylori 35A 12348564 YP_005770573.1 CDS rpmC NC_017360.1 1506433 1506633 R Pfam: PF00831; InterPro: IPR001854; 50S ribosomal protein L29 complement(1506433..1506633) Helicobacter pylori 35A 12348565 YP_005770574.1 CDS rplP NC_017360.1 1506620 1507045 R COG: COG0197; Pfam: PF00252; InterPro: IPR000114; 50S ribosomal protein L16 complement(1506620..1507045) Helicobacter pylori 35A 12348566 YP_005770575.1 CDS rpsC NC_017360.1 1507048 1507752 R COG: COG0092; Pfam: PF00417, PF07650, PF00189; InterPro: IPR005704; 30S ribosomal protein S3 complement(1507048..1507752) Helicobacter pylori 35A 12348567 YP_005770576.1 CDS rplV NC_017360.1 1507756 1508124 R COG: COG0091; Pfam: PF00237; InterPro: IPR001063; 50S ribosomal protein L22 complement(1507756..1508124) Helicobacter pylori 35A 12348568 YP_005770577.1 CDS rpsS NC_017360.1 1508134 1508415 R COG: COG0185; Pfam: PF00203; InterPro: IPR002222; 30S ribosomal protein S19 complement(1508134..1508415) Helicobacter pylori 35A 12348569 YP_005770578.1 CDS rplB NC_017360.1 1508427 1509257 R COG: COG0090; Pfam: PF00181, PF03947; InterPro: IPR005880; 50S ribosomal protein L2 complement(1508427..1509257) Helicobacter pylori 35A 12348570 YP_005770579.1 CDS rplW NC_017360.1 1509273 1509554 R COG: COG0089; Pfam: PF00276; InterPro: IPR012677; 50S ribosomal protein L23 complement(1509273..1509554) Helicobacter pylori 35A 12348571 YP_005770580.1 CDS rplD NC_017360.1 1509558 1510205 R COG: COG0088; Pfam: PF00573; InterPro: IPR002136; 50S ribosomal protein L4/L1 family protein complement(1509558..1510205) Helicobacter pylori 35A 12348572 YP_005770581.1 CDS rplC NC_017360.1 1510240 1510815 R COG: COG0087; Pfam: PF00297; InterPro: IPR000597; 50S ribosomal protein L3 complement(1510240..1510815) Helicobacter pylori 35A 12348573 YP_005770582.1 CDS rpsJ NC_017360.1 1510852 1511193 R COG: COG0051; Pfam: PF00338; InterPro: IPR001848; 30S ribosomal protein S10 complement(1510852..1511193) Helicobacter pylori 35A 12348574 YP_005770583.1 CDS HMPREF4655_21511 NC_017360.1 1511377 1512459 D ATP-binding protein 1511377..1512459 Helicobacter pylori 35A 12348575 YP_005770584.1 CDS HMPREF4655_21512 NC_017360.1 1512696 1513277 D hypothetical protein 1512696..1513277 Helicobacter pylori 35A 12348576 YP_005770585.1 CDS rnhB NC_017360.1 1513251 1513865 R COG: COG0164; Pfam: PF01351; InterPro: IPR001352; ribonuclease H complement(1513251..1513865) Helicobacter pylori 35A 12348577 YP_005770586.1 CDS HMPREF4655_21514 NC_017360.1 1513896 1514147 R hypothetical protein complement(1513896..1514147) Helicobacter pylori 35A 12348578 YP_005770587.1 CDS fumC NC_017360.1 1514170 1515561 R COG: COG0114; Pfam: PF00206; InterPro: IPR005677; fumarate hydratase complement(1514170..1515561) Helicobacter pylori 35A 12348579 YP_005770588.1 CDS HMPREF4655_21516 NC_017360.1 1515737 1516114 D hypothetical protein 1515737..1516114 Helicobacter pylori 35A 12348580 YP_005770589.1 CDS HMPREF4655_21517 NC_017360.1 1516119 1517357 D Pfam: PF02321; InterPro: IPR003423; hypothetical protein 1516119..1517357 Helicobacter pylori 35A 12348581 YP_005770590.1 CDS czcA2 NC_017360.1 1517354 1518352 D COG: COG0845; cation efflux system protein 1517354..1518352 Helicobacter pylori 35A 12348582 YP_005770591.1 CDS czcA3 NC_017360.1 1518353 1521466 D COG: COG3696; Pfam: PF00873; InterPro: IPR004763; cation efflux system protein 1518353..1521466 Helicobacter pylori 35A 12348583 YP_005770592.1 CDS azlD NC_017360.1 1521463 1521738 R COG: COG1687; Pfam: PF05437; InterPro: IPR008407; branched-chain amino acid transporter AzlD complement(1521463..1521738) Helicobacter pylori 35A 12348584 YP_005770593.1 CDS azlC NC_017360.1 1521804 1522490 R COG: COG1296; Pfam: PF03591; InterPro: IPR004471; azaleucine resistance protein AzlC complement(1521804..1522490) Helicobacter pylori 35A 12348585 YP_005770594.1 CDS dnaJ2 NC_017360.1 1522501 1523610 R COG: COG0484; Pfam: PF00226, PF00684, PF01556; InterPro: IPR012724; chaperone DnaJ complement(1522501..1523610) Helicobacter pylori 35A 12348586 YP_005770595.1 CDS HMPREF4655_21523 NC_017360.1 1523649 1523783 R hypothetical protein complement(1523649..1523783) Helicobacter pylori 35A 12348587 YP_005770596.1 CDS HMPREF4655_21524 NC_017360.1 1523789 1524865 D hypothetical protein 1523789..1524865 Helicobacter pylori 35A 12348588 YP_005770597.1 CDS trmU2 NC_017360.1 1524880 1525908 R COG: COG0482; Pfam: PF03054; InterPro: IPR004506; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase complement(1524880..1525908) Helicobacter pylori 35A 12348589 YP_005770598.1 CDS HMPREF4655_21526 NC_017360.1 1526032 1526811 D COG: COG2214; Pfam: PF00226; hypothetical protein 1526032..1526811 Helicobacter pylori 35A 12348590 YP_005770599.1 CDS nadD NC_017360.1 1526808 1527332 R COG: COG1057; Pfam: PF01467; InterPro: IPR005248; nicotinate-nucleotide adenylyltransferase complement(1526808..1527332) Helicobacter pylori 35A 12348591 YP_005770600.1 CDS nikR NC_017360.1 1527316 1527762 R COG: COG0864; Pfam: PF01402, PF08753; InterPro: IPR014864; CopG family transcriptional regulator complement(1527316..1527762) Helicobacter pylori 35A 12348592 YP_005770601.1 CDS exbB3 NC_017360.1 1528080 1528517 D COG: COG0811; Pfam: PF01618; InterPro: IPR014172; TonB-system energizer ExbB 1528080..1528517 Helicobacter pylori 35A 12348593 YP_005770602.1 CDS expD NC_017360.1 1528514 1528903 D COG: COG0848; Pfam: PF02472; InterPro: IPR003400; TonB system transporter ExbD 1528514..1528903 Helicobacter pylori 35A 12348594 YP_005770603.1 CDS HMPREF4655_21531 NC_017360.1 1528869 1529720 D COG: COG0810; Pfam: PF03544; InterPro: IPR006260; siderophore-mediated iron transport protein TonB 1528869..1529720 Helicobacter pylori 35A 12348595 YP_005770604.1 CDS dpnA NC_017360.1 1529892 1530179 D COG: COG0863; Pfam: PF01856, PF01555; InterPro: IPR002941; DNA (cytosine-5-)-methyltransferase 1529892..1530179 Helicobacter pylori 35A 12348596 YP_005770605.1 CDS aguA NC_017360.1 1530231 1531223 D COG: COG2957; Pfam: PF04371; InterPro: IPR007466; agmatine deiminase 1530231..1531223 Helicobacter pylori 35A 12348597 YP_005770606.1 CDS hypF NC_017360.1 1531220 1533472 D COG: COG0068; Pfam: PF00708, PF07503, PF01300; InterPro: IPR004421; hydrogenase maturation protein HypF 1531220..1533472 Helicobacter pylori 35A 12348598 YP_005770607.1 CDS hypE NC_017360.1 1533475 1534473 D COG: COG0309; Pfam: PF00586, PF02769; InterPro: IPR011854; hydrogenase expression/formation protein HypE 1533475..1534473 Helicobacter pylori 35A 12348599 YP_005770608.1 CDS HMPREF4655_21536 NC_017360.1 1534488 1534607 R hypothetical protein complement(1534488..1534607) Helicobacter pylori 35A 12348600 YP_005770609.1 CDS fcl NC_017360.1 1534722 1535654 R COG: COG0451; Pfam: PF01370; InterPro: IPR001509; GDP-L-fucose synthase complement(1534722..1535654) Helicobacter pylori 35A 12348601 YP_005770610.1 CDS gmd NC_017360.1 1535647 1536840 R COG: COG1089; Pfam: PF01370; InterPro: IPR006368; GDP-mannose 4,6-dehydratase complement(1535647..1536840) Helicobacter pylori 35A 12348602 YP_005770611.1 CDS pmi NC_017360.1 1536806 1538218 R COG: COG0836; Pfam: PF00483, PF01050; InterPro: IPR006375; mannose-6-phosphate isomerase complement(1536806..1538218) Helicobacter pylori 35A 12348603 YP_005770612.1 CDS comB10 NC_017360.1 1538288 1539424 R COG: COG2948; Pfam: PF03743; InterPro: IPR005498; comB10 competence protein complement(1538288..1539424) Helicobacter pylori 35A 12348604 YP_005770613.1 CDS comB9 NC_017360.1 1539417 1540379 R COG: COG3504; Pfam: PF03524; comB9 competence protein complement(1539417..1540379) Helicobacter pylori 35A 12348605 YP_005770614.1 CDS comB8 NC_017360.1 1540379 1541122 R COG: COG3736; Pfam: PF04335; InterPro: IPR007430; comB8 competence protein complement(1540379..1541122) Helicobacter pylori 35A 12348606 YP_005770615.1 CDS HMPREF4655_21543 NC_017360.1 1541248 1542303 R NADH-ubiquinone oxidoreductase subunit complement(1541248..1542303) Helicobacter pylori 35A 12348607 YP_005770616.1 CDS HMPREF4655_21544 NC_017360.1 1542311 1543309 R hypothetical protein complement(1542311..1543309) Helicobacter pylori 35A 12348608 YP_005770617.1 CDS HMPREF4655_21545 NC_017360.1 1543306 1543599 R COG: COG0718; Pfam: PF02575; InterPro: IPR004401; hypothetical protein complement(1543306..1543599) Helicobacter pylori 35A 12348609 YP_005770618.1 CDS panD NC_017360.1 1543610 1543960 R COG: COG0853; Pfam: PF02261; InterPro: IPR003190; aspartate 1-decarboxylase complement(1543610..1543960) Helicobacter pylori 35A 12348610 YP_005770619.1 CDS clpA NC_017360.1 1543950 1546172 R COG: COG0542; Pfam: PF02861, PF00004, PF07724; InterPro: IPR003593; ATP-dependent C1p protease complement(1543950..1546172) Helicobacter pylori 35A 12348611 YP_005770620.1 CDS clpS NC_017360.1 1546172 1546447 R COG: COG2127; Pfam: PF02617; InterPro: IPR014719; ATP-dependent Clp protease adaptor protein ClpS complement(1546172..1546447) Helicobacter pylori 35A 12348612 YP_005770621.1 CDS HMPREF4655_21549 NC_017360.1 1546467 1546880 R Pfam: PF00582; InterPro: IPR006016; hypothetical protein complement(1546467..1546880) Helicobacter pylori 35A 12348613 YP_005770622.1 CDS HMPREF4655_21550 NC_017360.1 1547013 1547333 D hypothetical protein 1547013..1547333 Helicobacter pylori 35A 12348614 YP_005770623.1 CDS HMPREF4655_21551 NC_017360.1 1547330 1547629 D hypothetical protein 1547330..1547629 Helicobacter pylori 35A 12348615 YP_005770624.1 CDS bioD NC_017360.1 1547633 1548289 D COG: COG0132; InterPro: IPR004472; dethiobiotin synthetase 1547633..1548289 Helicobacter pylori 35A 12348616 YP_005770625.1 CDS HMPREF4655_21553 NC_017360.1 1548266 1548799 R Pfam: PF07509; InterPro: IPR011088; hypothetical protein complement(1548266..1548799) Helicobacter pylori 35A 12348617 YP_005770626.1 CDS icd NC_017360.1 1548865 1550142 R COG: COG0538; Pfam: PF00180; InterPro: IPR004439; isocitrate dehydrogenase (NADP(+)) complement(1548865..1550142) Helicobacter pylori 35A 12348618 YP_005770627.1 CDS gltA NC_017360.1 1550341 1551621 D COG: COG0372; Pfam: PF00285; InterPro: IPR010953; citrate (Si)-synthase 1550341..1551621 Helicobacter pylori 35A 12348619 YP_005770628.1 CDS HMPREF4655_21556 NC_017360.1 1551587 1551751 R Na(+)/H(+) antiporter subunit G complement(1551587..1551751) Helicobacter pylori 35A 12348620 YP_005770629.1 CDS HMPREF4655_21557 NC_017360.1 1551869 1552318 R Pfam: PF01223; endonuclease complement(1551869..1552318) Helicobacter pylori 35A 12348621 YP_005770630.1 CDS mod3 NC_017360.1 1552443 1554341 R COG: COG2189; Pfam: PF01555; InterPro: IPR002941; methylase complement(1552443..1554341) Helicobacter pylori 35A 12348622 YP_005770631.1 CDS HMPREF4655_21559 NC_017360.1 1554335 1556944 R COG: COG3421; Pfam: PF04851; InterPro: IPR014001; type III restriction-modification enzyme complement(1554335..1556944) Helicobacter pylori 35A 12348623 YP_005770632.1 CDS bioB NC_017360.1 1557073 1557924 D COG: COG0502; Pfam: PF04055, PF06968; InterPro: IPR013785; biotin synthase 1557073..1557924 Helicobacter pylori 35A 12348624 YP_005770633.1 CDS yihY NC_017360.1 1557924 1558802 D COG: COG1295; Pfam: PF03631; InterPro: IPR004664; YihY family protein 1557924..1558802 Helicobacter pylori 35A 12348625 YP_005770634.1 CDS HMPREF4655_21562 NC_017360.1 1559527 1559658 R hypothetical protein complement(1559527..1559658) Helicobacter pylori 35A 12348626 YP_005770635.1 CDS HMPREF4655_21563 NC_017360.1 1559718 1560230 R hypothetical protein complement(1559718..1560230) Helicobacter pylori 35A 12348627 YP_005770636.1 CDS HMPREF4655_21564 NC_017360.1 1564155 1564307 R hypothetical protein complement(1564155..1564307) Helicobacter pylori 35A 12348631 YP_005770637.1 CDS HMPREF4655_21565 NC_017360.1 1564522 1564872 D hypothetical protein 1564522..1564872 Helicobacter pylori 35A 12348632 HMPREF4655_t20001 tRNA HMPREF4655_t20001 NC_017360.1 118432 118507 D tRNA-Phe 118432..118507 Helicobacter pylori 35A 12348745 HMPREF4655_t20002 tRNA HMPREF4655_t20002 NC_017360.1 208634 208709 R tRNA-Glu complement(208634..208709) Helicobacter pylori 35A 12348837 HMPREF4655_t20003 tRNA HMPREF4655_t20003 NC_017360.1 208773 208849 R tRNA-Asp complement(208773..208849) Helicobacter pylori 35A 12348838 HMPREF4655_t20004 tRNA HMPREF4655_t20004 NC_017360.1 208883 208958 R tRNA-Val complement(208883..208958) Helicobacter pylori 35A 12348839 HMPREF4655_t20005 tRNA HMPREF4655_t20005 NC_017360.1 209000 209074 R tRNA-Glu complement(209000..209074) Helicobacter pylori 35A 12348840 HMPREF4655_t20006 tRNA HMPREF4655_t20006 NC_017360.1 209085 209160 R tRNA-Lys complement(209085..209160) Helicobacter pylori 35A 12348841 HMPREF4655_t20007 tRNA HMPREF4655_t20007 NC_017360.1 293686 293761 R tRNA-Val complement(293686..293761) Helicobacter pylori 35A 12348922 HMPREF4655_t20008 tRNA HMPREF4655_t20008 NC_017360.1 357313 357404 R tRNA-Ser complement(357313..357404) Helicobacter pylori 35A 12348982 HMPREF4655_t20009 tRNA HMPREF4655_t20009 NC_017360.1 459678 459752 R tRNA-Asn complement(459678..459752) Helicobacter pylori 35A 12349085 HMPREF4655_t20010 tRNA HMPREF4655_t20010 NC_017360.1 482475 482550 R tRNA-Ala complement(482475..482550) Helicobacter pylori 35A 12349111 HMPREF4655_t20011 tRNA HMPREF4655_t20011 NC_017360.1 555701 555777 D tRNA-Arg 555701..555777 Helicobacter pylori 35A 12349187 HMPREF4655_t20012 tRNA HMPREF4655_t20012 NC_017360.1 607533 607620 R tRNA-Ser complement(607533..607620) Helicobacter pylori 35A 12349239 HMPREF4655_t20013 tRNA HMPREF4655_t20013 NC_017360.1 660459 660536 R tRNA-Pro complement(660459..660536) Helicobacter pylori 35A 12349296 HMPREF4655_t20014 tRNA HMPREF4655_t20014 NC_017360.1 738916 738992 R tRNA-Arg complement(738916..738992) Helicobacter pylori 35A 12349371 HMPREF4655_t20015 tRNA HMPREF4655_t20015 NC_017360.1 829347 829423 D tRNA-Met 829347..829423 Helicobacter pylori 35A 12349467 HMPREF4655_t20016 tRNA HMPREF4655_t20016 NC_017360.1 1121046 1121122 R tRNA-Met complement(1121046..1121122) Helicobacter pylori 35A 12348171 HMPREF4655_t20017 tRNA HMPREF4655_t20017 NC_017360.1 1121140 1121214 R tRNA-Gln complement(1121140..1121214) Helicobacter pylori 35A 12348172 HMPREF4655_t20018 tRNA HMPREF4655_t20018 NC_017360.1 1177928 1178002 D tRNA-Gly 1177928..1178002 Helicobacter pylori 35A 12348219 HMPREF4655_t20019 tRNA HMPREF4655_t20019 NC_017360.1 1178398 1178484 D tRNA-Leu 1178398..1178484 Helicobacter pylori 35A 12348221 HMPREF4655_t20020 tRNA HMPREF4655_t20020 NC_017360.1 1178559 1178633 D tRNA-Cys 1178559..1178633 Helicobacter pylori 35A 12348222 HMPREF4655_t20021 tRNA HMPREF4655_t20021 NC_017360.1 1178679 1178766 D tRNA-Ser 1178679..1178766 Helicobacter pylori 35A 12348223 HMPREF4655_t20022 tRNA HMPREF4655_t20022 NC_017360.1 1236530 1236606 R tRNA-Arg complement(1236530..1236606) Helicobacter pylori 35A 12348275 HMPREF4655_t20023 tRNA HMPREF4655_t20023 NC_017360.1 1236624 1236700 R tRNA-Arg complement(1236624..1236700) Helicobacter pylori 35A 12348276 HMPREF4655_t20024 tRNA HMPREF4655_t20024 NC_017360.1 1236760 1236836 R tRNA-His complement(1236760..1236836) Helicobacter pylori 35A 12348277 HMPREF4655_t20025 tRNA HMPREF4655_t20025 NC_017360.1 1236905 1236982 R tRNA-Pro complement(1236905..1236982) Helicobacter pylori 35A 12348278 HMPREF4655_t20026 tRNA HMPREF4655_t20026 NC_017360.1 1286987 1287071 R tRNA-Leu complement(1286987..1287071) Helicobacter pylori 35A 12348325 HMPREF4655_t20027 tRNA HMPREF4655_t20027 NC_017360.1 1291853 1291929 D tRNA-Ile 1291853..1291929 Helicobacter pylori 35A 12348331 HMPREF4655_t20028 tRNA HMPREF4655_t20028 NC_017360.1 1291945 1292020 D tRNA-Ala 1291945..1292020 Helicobacter pylori 35A 12348332 HMPREF4655_t20029 tRNA HMPREF4655_t20029 NC_017360.1 1383767 1383844 R tRNA-Met complement(1383767..1383844) Helicobacter pylori 35A 12348421 HMPREF4655_t20030 tRNA HMPREF4655_t20030 NC_017360.1 1412149 1412224 R tRNA-Trp complement(1412149..1412224) Helicobacter pylori 35A 12348444 HMPREF4655_t20031 tRNA HMPREF4655_t20031 NC_017360.1 1413782 1413856 R tRNA-Thr complement(1413782..1413856) Helicobacter pylori 35A 12348447 HMPREF4655_t20032 tRNA HMPREF4655_t20032 NC_017360.1 1413887 1413963 R tRNA-Gly complement(1413887..1413963) Helicobacter pylori 35A 12348448 HMPREF4655_t20033 tRNA HMPREF4655_t20033 NC_017360.1 1413979 1414063 R tRNA-Tyr complement(1413979..1414063) Helicobacter pylori 35A 12348449 HMPREF4655_t20034 tRNA HMPREF4655_t20034 NC_017360.1 1414091 1414166 R tRNA-Thr complement(1414091..1414166) Helicobacter pylori 35A 12348450 HMPREF4655_t20035 tRNA HMPREF4655_t20035 NC_017360.1 1419470 1419556 R tRNA-Leu complement(1419470..1419556) Helicobacter pylori 35A 12348460 HMPREF4655_t20036 tRNA HMPREF4655_t20036 NC_017360.1 1419610 1419696 R tRNA-Leu complement(1419610..1419696) Helicobacter pylori 35A 12348462 HMPREF4655_r20001 rRNA HMPREF4655_r20001 NC_017360.1 27205 28697 R 16S ribosomal RNA complement(27205..28697) Helicobacter pylori 35A 12348661 HMPREF4655_r20002 rRNA HMPREF4655_r20002 NC_017360.1 1218020 1218135 R 5S ribosomal RNA complement(1218020..1218135) Helicobacter pylori 35A 12348259 HMPREF4655_r20003 rRNA HMPREF4655_r20003 NC_017360.1 1218368 1221253 R 23S ribosomal RNA complement(1218368..1221253) Helicobacter pylori 35A 12348260 HMPREF4655_r20004 rRNA HMPREF4655_r20004 NC_017360.1 1341100 1342592 R 16S ribosomal RNA complement(1341100..1342592) Helicobacter pylori 35A 12348381 HMPREF4655_r20005 rRNA HMPREF4655_r20005 NC_017360.1 1560402 1560517 R 5S ribosomal RNA complement(1560402..1560517) Helicobacter pylori 35A 12348628 HMPREF4655_r20006 rRNA HMPREF4655_r20006 NC_017360.1 1560750 1563635 R 23S ribosomal RNA complement(1560750..1563635) Helicobacter pylori 35A 12348629