-- dump date   	20140619_112439
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_003516053.1	PMID: 11222759; ; evidence=ISS; db_xref=cjejuni:Cj1713; date=20070321; method=automatic:reciprocal fasta
YP_003516057.1	PMID: 16835299; ; evidence=ISS; db_xref=cjejuni:Cj0274; date=20070321; method=automatic:reciprocal fasta
YP_003516072.1	PMID: 8170397; ; evidence=ISS; db_xref=saureusMSSA476:SAS2540; date=20070321; method=automatic:top fasta hit; signal peptide cleavage between amino acids 31 and 32 i.e. SLASSFGNA-ADG; Pubmed Blastp with whole protein identified similarity to many autotransporters including AidA and Pic between amino acids 955 and 1242, recognized as autotransporter in pfam; first 955 amino acids do not detect any significantly similar proteins on PubMed; AidA of difuse E. coli reference; Charbonneau ME, Mourez M. Bacteriol. 2007 Dec;189(24):9020-9; Pic reference: Henderson IR, Czeczulin J, Eslava C, Noriega F, Nataro JP.Infect Immun. 1999 Nov;67(11):5587-96; KH
YP_003516073.1	PMID: 8170397; ; evidence=ISS; db_xref=bcenocepacia:CAM2169; date=20070321; method=automatic:top fasta hit; SignalP predicts most likely cleavage site between pos. 32 and 33: MNA-AD; KH; no significant similarities to first 1200 amino acids on BlastP Pubmed
YP_003516074.1	PMID: 8170397; ; evidence=IEA; db_xref=ypestis:YPO1004; date=20070321; method=automatic:top fasta hit; Most likely cleavage site between pos. 48 and 49: LFA-TS; KH; no significantly similar proteins to potential passenger domain
YP_003516087.1	PMID: 12747845; ; evidence=ISS
YP_003516201.1	ortholog to H. pylori HP1154
YP_003516272.1	potential remote cheZ ortholog according to Terry, K. et al., Mol Microbiol. 2006
YP_003516414.1	anthranilate synthase component II; evidence=ISS; db_xref=sbongori:SBG1586; date=20070321; method=automatic:reciprocal fasta
YP_003516452.1	product represents closest homolog to C. jejuni, H. hepaticus and H. pylori FlgM
YP_003516455.1	not present in H. pylori, closest homolog in H. hepaticus
YP_003516496.1	unknown EC_number=; ; evidence=ISS; db_xref=styphimuriumDT104:SDT1895; date=20070321; method=automatic:reciprocal fasta
YP_003516599.1	PAS domain sensor protein; not present in H. pylori and H. hepaticus, closest homolog in C. jejuni
YP_003516607.1	gene product similar to HH0014 and HP0232 flagella-associated proteins
YP_003516613.1	16481326; ; evidence=ISS; db_xref=cjejuni:Cj1140; date=20070321; method=automatic:reciprocal fasta
YP_003516657.1	may be involved in flagellar glycosylation
YP_003516679.1	homologous to H. pylori and H. hepaticus hook-associated protein 3
YP_003516705.1	PMID: 8501031
YP_003516706.1	homologous to H. pylori HP0114 gene product involved in flagellar glycosylation
YP_003516722.1	PMID: 16978585; ; evidence=ISS; db_xref=Cms:CMS1578; date=20070321; method=automatic:top fasta hit
YP_003516753.1	16790756; ; evidence=ISS
YP_003516754.1	16790756; ; evidence=ISS
YP_003516755.1	16790756; ; evidence=ISS; db_xref=bcenocepacia:CAM0713; date=20070321; method=automatic:reciprocal fasta
YP_003516771.1	FlgE2
YP_003516787.1	10644761; ; evidence=ISS; db_xref=cjejuni:Cj0271; date=20070321; method=automatic:reciprocal fasta
YP_003516812.1	17062623; ; evidence=ISS; db_xref=cjejuni:Cj1188c; date=20070321; method=automatic:reciprocal fasta
YP_003516849.1	8170397; 11292773; ; evidence=ISS; db_xref=bcenocepacia:CAM2169; date=20070321; method=automatic:top fasta hit; Autotransporter with pfam03797 domain in C-terminus (amino acid 1150-142). 43% similarity over 289 amino acids to Yersinia AidA. Other proteins with similarity include EspP; signal sequence cleavage predicted by SignalP between amino acid 47 and 48: VNA-EG; AidA of difuse E. coli reference; Charbonneau ME, Mourez M. Bacteriol. 2007 Dec;189(24):9020-9; EspP reference:Barnard TJ, Dautin N, Lukacik P, Bernstein HD, Buchanan SK. Nat Struct Mol Biol. 2007 Dec;14(12):1214-20; KH
YP_003516852.1	11292773; ; evidence=ISS; db_xref=cjejuni:Cj0943; date=20070321; method=automatic:top fasta hit
YP_003516865.1	homologous to flagellar activator of sigma54 FlgR of H. pylori
YP_003516977.1	gene product involved in flagellar glycosylation ortholog to H. pylori HP0840
YP_003516993.1	11051763; ; evidence=ISS; db_xref=cjejuni:Cj1094c; date=20070321; method=automatic:reciprocal fasta; KH; Identified other YajC with blastP on pubmed, clostest is H pylori HPAG Score = 95.5 bits (236), Expect = 5e-19 Identities = 45/65 (69%), Positives = 55/65 (84%), Gaps = 0/65 (0%).Only one on genome. In operon with SecF and SecD.
YP_003516997.1	8525063; ; evidence=ISS; db_xref=cjejuni:Cj0596; date=20070321; method=automatic:reciprocal fasta
YP_003517060.1	10660542; ; evidence=ISS; db_xref=cjejuni:Cj1143; date=20070321; method=automatic:top fasta hit
YP_003517078.1	12634335; ; evidence=ISS
YP_003517098.1	Colicin V production protein homolog; evidence=ISS; db_xref=cjejuni:Cj0399; date=20070321; method=automatic:reciprocal fasta
YP_003517108.1	10640603; ; evidence=ISS; db_xref=cjejuni:Cj0634; date=20070321; method=automatic:reciprocal fasta
YP_003517139.1	homologous to H. hepaticus and H. pylori HP1575 flhB2_C-terminal domain
YP_003517150.1	homologous to H. pylori HP0178 involved in flagellar glycosylation
YP_003517151.1	flmH gene involved in flagellar glycosylation
YP_003517152.1	flmD gene possibly involved in flagellar glycosylation, homologous to HP0326b HPflmD in H. pylori
YP_003517153.1	homologous to H. pylori HP0326a involved in flagellar glycosylation
YP_003517200.1	[carboxylating]; evidence=ISS; db_xref=cbotulinum:CBO1447; date=20070321; method=automatic:reciprocal fasta
YP_003517249.1	unknown EC_number=3.1.26.; ; evidence=ISS; db_xref=cjejuni:Cj1636c; date=20070321; method=automatic:reciprocal fasta
YP_003517283.1	[includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase]; evidence=ISS; db_xref=cdifficile:CD1554; date=20070321; method=automatic:reciprocal fasta
YP_003517306.1	(ATP-dependant protease); evidence=ISS; db_xref=cjejuni:Cj1205c; date=20070321; method=automatic:reciprocal fasta
YP_003517322.1	gene product is orthologous to H. pylori HP0958 involved in stabilizing RpoN
YP_003517351.1	12426358; ; evidence=ISS; db_xref=yenterocolitica:YE3630; date=20070321; method=automatic:reciprocal fasta
YP_003517352.1	12426358; ; evidence=ISS; db_xref=yenterocolitica:YE3629; date=20070321; method=automatic:top fasta hit
YP_003517353.1	12426358; ; evidence=ISS
YP_003517354.1	12426358; ; evidence=ISS
YP_003517355.1	15968080; ; evidence=ISS; db_xref=cjejuni:Cj1222c; date=20070321; method=automatic:top fasta hit
YP_003517356.1	15968080; ; evidence=ISS; db_xref=cjejuni:Cj1223c; date=20070321; method=automatic:reciprocal fasta
YP_003517362.1	MatE family protein; evidence=ISS; db_xref=cbotulinum:CBO0072; date=20070321; method=automatic:top fasta hit