-- dump date 20240506_000525 -- class Genbank::Contig -- table contig_comment -- id comment NC_015666.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002839.1.REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain AndersonREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, SalinewaterREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in InnerREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002839.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_015658.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002840.1.REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain AndersonREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, SalinewaterREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in InnerREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002840.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_015667.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002841.1.REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain AndersonREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, SalinewaterREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in InnerREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002841.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_015659.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002842.1.REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain AndersonREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, SalinewaterREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in InnerREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, ChinaREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shapedREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002842.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4091189 Source DNA and organism available from Iain Anderson (ijanderson@lbl.gov) Contacts: Iain Anderson (ijanderson@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Halopiger xanaduensis SH-6 collection_date :: Missing lat_lon :: 43.2 114.016 depth :: Missing alt_elev :: Missing country :: China environment :: Soil, Salinewater num_replicons :: 4 ref_biomaterial :: DSM 18323 biotic_relationship :: Free living trophic_level :: Missing rel_to_oxygen :: Missing isol_growth_condt :: 17625165 sequencing_meth :: WGS assembly :: Newbler v. 2.3 (pre-release) finishing_strategy :: Finished GOLD Stamp ID :: Gi05995 Type Strain :: Yes Funding Program :: DOE-CSP 2010 Isolation Site :: Sediment of saline Lake Shangmatala in Inner Mongolia, China Cell Shape :: Pleomorphic-shaped Motility :: Nonmotile Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile pH :: 7.5 - 8.0 Gram Staining :: Gram- ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.3 Genome Coverage :: 30x Sequencing Technology :: 454/Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 02:17:40 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 4,320 CDSs (total) :: 4,258 Genes (coding) :: 4,198 CDSs (with protein) :: 4,198 Genes (RNA) :: 62 rRNAs :: 4, 3, 3 (5S, 16S, 23S) complete rRNAs :: 4, 3, 3 (5S, 16S, 23S) tRNAs :: 50 ncRNAs :: 2 Pseudo Genes (total) :: 60 CDSs (without protein) :: 60 Pseudo Genes (ambiguous residues) :: 0 of 60 Pseudo Genes (frameshifted) :: 30 of 60 Pseudo Genes (incomplete) :: 36 of 60 Pseudo Genes (internal stop) :: 11 of 60 Pseudo Genes (multiple problems) :: 15 of 60 ##Genome-Annotation-Data-END## COMPLETENESS: full length.