-- dump date 20140619_105017 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_874357.1 118216075 3021849 complement(join(5079..5178,1..107)) 1 NC_006298.1 hypothetical protein 107 3021849 HS_p06 Haemophilus somnus 129PT hypothetical protein YP_874357.1 5079 R 205914 CDS YP_087174.1 52421263 3021847 complement(341..547) 1 NC_006298.1 hypothetical protein 547 3021847 HS_p01 Haemophilus somnus 129PT hypothetical protein YP_087174.1 341 R 205914 CDS YP_087175.1 52421264 3021852 complement(558..1529) 1 NC_006298.1 replication protein 1529 rep 3021852 rep Haemophilus somnus 129PT replication protein YP_087175.1 558 R 205914 CDS YP_087176.1 52421265 3021850 3309..4280 1 NC_006298.1 replication protein 4280 rep 3021850 rep Haemophilus somnus 129PT replication protein YP_087176.1 3309 D 205914 CDS YP_087177.1 52421266 3021848 4327..4563 1 NC_006298.1 hypothetical protein 4563 3021848 HS_p04 Haemophilus somnus 129PT hypothetical protein YP_087177.1 4327 D 205914 CDS YP_087178.1 52421267 3021851 complement(4798..5079) 1 NC_006298.1 hypothetical protein 5079 3021851 HS_p05 Haemophilus somnus 129PT hypothetical protein YP_087178.1 4798 R 205914 CDS YP_718205.1 113461928 4239482 join(2006035..2007700,1..257) 1 NC_008309.1 hypothetical protein 257 4239482 HS_1792 Haemophilus somnus 129PT hypothetical protein YP_718205.1 2006035 D 205914 CDS YP_718206.1 113460150 4239506 384..1181 1 NC_008309.1 integrase 1181 4239506 HS_0001 Haemophilus somnus 129PT integrase YP_718206.1 384 D 205914 CDS YP_718207.1 113460151 4239509 1927..3324 1 NC_008309.1 nicotinate phosphoribosyltransferase 3324 pncB 4239509 pncB Haemophilus somnus 129PT nicotinate phosphoribosyltransferase YP_718207.1 1927 D 205914 CDS YP_718208.1 113460152 4239510 complement(3401..3865) 1 NC_008309.1 catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase 3865 gptA 4239510 gptA Haemophilus somnus 129PT xanthine-guanine phosphoribosyltransferase YP_718208.1 3401 R 205914 CDS YP_718209.1 113460153 4239511 3990..5450 1 NC_008309.1 M20C family Xaa-His dipeptidase 5450 pepD 4239511 pepD Haemophilus somnus 129PT M20C family Xaa-His dipeptidase YP_718209.1 3990 D 205914 CDS YP_718210.1 113460154 4239512 complement(5598..8168) 1 NC_008309.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 8168 mutS 4239512 mutS Haemophilus somnus 129PT DNA mismatch repair protein MutS YP_718210.1 5598 R 205914 CDS YP_718211.1 113460155 4239513 complement(8310..9125) 1 NC_008309.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 9125 aroE 4239513 aroE Haemophilus somnus 129PT shikimate 5-dehydrogenase YP_718211.1 8310 R 205914 CDS YP_718212.1 113460156 4239514 complement(9129..9707) 1 NC_008309.1 Sua5 family translation factor 9707 4239514 HS_0007 Haemophilus somnus 129PT Sua5 family translation factor YP_718212.1 9129 R 205914 CDS YP_718213.1 113460157 4239515 complement(9677..10225) 1 NC_008309.1 DNA topoisomerase I-like protein 10225 4239515 HS_0008 Haemophilus somnus 129PT DNA topoisomerase I-like protein YP_718213.1 9677 R 205914 CDS YP_718214.1 113460158 4239516 10359..10922 1 NC_008309.1 hypothetical protein 10922 4239516 HS_0009 Haemophilus somnus 129PT hypothetical protein YP_718214.1 10359 D 205914 CDS YP_718215.1 113460159 4239517 10922..11347 1 NC_008309.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 11347 4239517 HS_0010 Haemophilus somnus 129PT Holliday junction resolvase-like protein YP_718215.1 10922 D 205914 CDS YP_718216.1 113460160 4239518 complement(11348..12106) 1 NC_008309.1 sugar metabolism transcriptional regulator 12106 4239518 HS_0011 Haemophilus somnus 129PT sugar metabolism transcriptional regulator YP_718216.1 11348 R 205914 CDS YP_718217.1 113460161 4239519 12277..13185 1 NC_008309.1 3-hydroxyisobutyrate dehydrogenase 13185 4239519 HS_0012 Haemophilus somnus 129PT 3-hydroxyisobutyrate dehydrogenase YP_718217.1 12277 D 205914 CDS YP_718218.1 113460162 4239520 13187..14428 1 NC_008309.1 secretion system component 14428 4239520 HS_0013 Haemophilus somnus 129PT secretion system component YP_718218.1 13187 D 205914 CDS YP_718219.1 113460163 4239521 14425..15057 1 NC_008309.1 aldolase 15057 fucA 4239521 fucA Haemophilus somnus 129PT aldolase YP_718219.1 14425 D 205914 CDS YP_718220.1 113460164 4239522 15060..15836 1 NC_008309.1 hydroxypyruvate isomerase 15836 4239522 HS_0015 Haemophilus somnus 129PT hydroxypyruvate isomerase YP_718220.1 15060 D 205914 CDS YP_718221.1 113460165 4239523 15963..16910 1 NC_008309.1 hypothetical protein 16910 4239523 HS_0016 Haemophilus somnus 129PT hypothetical protein YP_718221.1 15963 D 205914 CDS YP_718222.1 113460166 4239524 16926..18398 1 NC_008309.1 GntP family permease 18398 gntP 4239524 gntP Haemophilus somnus 129PT GntP family permease YP_718222.1 16926 D 205914 CDS YP_718223.1 113461929 4239525 complement(18540..18716) 1 NC_008309.1 hypothetical protein 18716 4239525 HS_0017a Haemophilus somnus 129PT hypothetical protein YP_718223.1 18540 R 205914 CDS YP_718224.1 113460167 4239526 19007..20050 1 NC_008309.1 hypothetical protein 20050 4239526 HS_0018 Haemophilus somnus 129PT hypothetical protein YP_718224.1 19007 D 205914 CDS YP_718225.1 113460168 4239527 20037..21212 1 NC_008309.1 major facilitator superfamily permease 21212 4239527 HS_0019 Haemophilus somnus 129PT major facilitator superfamily permease YP_718225.1 20037 D 205914 CDS YP_718226.1 113460169 4239528 complement(21510..22280) 1 NC_008309.1 GntR family transcriptional regulator 22280 uxuR 4239528 uxuR Haemophilus somnus 129PT GntR family transcriptional regulator YP_718226.1 21510 R 205914 CDS YP_718227.1 113460170 4239529 22388..23446 1 NC_008309.1 Zn-binding dehydrogenase 23446 4239529 HS_0021 Haemophilus somnus 129PT Zn-binding dehydrogenase YP_718227.1 22388 D 205914 CDS YP_718228.1 113460171 4239530 23475..24458 1 NC_008309.1 dicarboxylate-binding protein 24458 4239530 HS_0022 Haemophilus somnus 129PT dicarboxylate-binding protein YP_718228.1 23475 D 205914 CDS YP_718229.1 113460172 4239531 24523..25002 1 NC_008309.1 permease 25002 4239531 HS_0023 Haemophilus somnus 129PT permease YP_718229.1 24523 D 205914 CDS YP_718230.1 113460173 4239532 24999..26273 1 NC_008309.1 permease 26273 4239532 HS_0024 Haemophilus somnus 129PT permease YP_718230.1 24999 D 205914 CDS YP_718231.1 113460174 4239533 26460..27107 1 NC_008309.1 allophanate hydrolase subunit 1 27107 4239533 HS_0025 Haemophilus somnus 129PT allophanate hydrolase subunit 1 YP_718231.1 26460 D 205914 CDS YP_718232.1 113460175 4239534 27104..28033 1 NC_008309.1 allophanate hydrolase subunit 2 28033 4239534 HS_0026 Haemophilus somnus 129PT allophanate hydrolase subunit 2 YP_718232.1 27104 D 205914 CDS YP_718233.1 113460176 4239535 28020..28763 1 NC_008309.1 LamB/YcsF family protein 28763 4239535 HS_0027 Haemophilus somnus 129PT LamB/YcsF family protein YP_718233.1 28020 D 205914 CDS YP_718234.1 113460177 4239536 28889..30076 1 NC_008309.1 permease 30076 4239536 HS_0028 Haemophilus somnus 129PT permease YP_718234.1 28889 D 205914 CDS YP_718235.1 113460178 4239537 30320..31048 1 NC_008309.1 positive and negative regulator; regulates the araBAD and araFGH operons and other genes involved in the transport and catabolism of L-arabinose; DNA-binding transcriptional regulator AraC 31048 araC 4239537 araC Haemophilus somnus 129PT DNA-binding transcriptional regulator AraC YP_718235.1 30320 D 205914 CDS YP_718236.1 113460179 4239538 31236..32210 1 NC_008309.1 sugar ABC transporter sugar-binding protein 32210 4239538 HS_0030 Haemophilus somnus 129PT sugar ABC transporter sugar-binding protein YP_718236.1 31236 D 205914 CDS YP_718237.1 113460180 4239539 32278..33753 1 NC_008309.1 sugar ABC transporter ATP-binding 33753 4239539 HS_0031 Haemophilus somnus 129PT sugar ABC transporter ATP-binding YP_718237.1 32278 D 205914 CDS YP_718238.1 113460181 4239540 33722..34696 1 NC_008309.1 sugar ABC transporter permease 34696 4239540 HS_0032 Haemophilus somnus 129PT sugar ABC transporter permease YP_718238.1 33722 D 205914 CDS YP_718239.1 113460182 4239541 34699..35649 1 NC_008309.1 sugar ABC transporter permease 35649 4239541 HS_0033 Haemophilus somnus 129PT sugar ABC transporter permease YP_718239.1 34699 D 205914 CDS YP_718240.1 113460183 4239542 35662..37254 1 NC_008309.1 sugar kinase 37254 4239542 HS_0034 Haemophilus somnus 129PT sugar kinase YP_718240.1 35662 D 205914 CDS YP_718241.1 113460184 4239543 complement(37376..38092) 1 NC_008309.1 peroxiredoxin 38092 4239543 HS_0035 Haemophilus somnus 129PT peroxiredoxin YP_718241.1 37376 R 205914 CDS YP_718242.1 113460185 4239544 38221..39135 1 NC_008309.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 39135 oxyR 4239544 oxyR Haemophilus somnus 129PT DNA-binding transcriptional regulator OxyR YP_718242.1 38221 D 205914 CDS YP_718243.1 113460186 4239545 complement(39262..39657) 1 NC_008309.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 39657 mscL 4239545 mscL Haemophilus somnus 129PT large-conductance mechanosensitive channel YP_718243.1 39262 R 205914 CDS YP_718244.1 113460187 4239546 complement(39742..41118) 1 NC_008309.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 41118 trkA 4239546 trkA Haemophilus somnus 129PT potassium transporter peripheral membrane component YP_718244.1 39742 R 205914 CDS YP_718245.1 113460188 4239547 complement(41203..42591) 1 NC_008309.1 ribosomal RNA small subunit methyltransferase B 42591 rsmB 4239547 rsmB Haemophilus somnus 129PT ribosomal RNA small subunit methyltransferase B YP_718245.1 41203 R 205914 CDS YP_718246.1 113460189 4239548 complement(42588..43541) 1 NC_008309.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 43541 fmt 4239548 fmt Haemophilus somnus 129PT methionyl-tRNA formyltransferase YP_718246.1 42588 R 205914 CDS YP_718247.1 113460190 4239549 complement(43616..44128) 1 NC_008309.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 44128 def 4239549 def Haemophilus somnus 129PT peptide deformylase YP_718247.1 43616 R 205914 CDS YP_718248.1 113460191 4239550 complement(44316..44945) 1 NC_008309.1 nitrate/nitrite response regulator protein 44945 narP 4239550 narP Haemophilus somnus 129PT nitrate/nitrite response regulator protein YP_718248.1 44316 R 205914 CDS YP_718249.1 113460192 4239551 complement(44960..47470) 1 NC_008309.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 47470 cyaA 4239551 cyaA Haemophilus somnus 129PT adenylate cyclase YP_718249.1 44960 R 205914 CDS YP_718250.1 113460193 4239552 47625..48590 1 NC_008309.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 48590 hemC 4239552 hemC Haemophilus somnus 129PT porphobilinogen deaminase YP_718250.1 47625 D 205914 CDS YP_718251.1 113460194 4239553 48677..49345 1 NC_008309.1 uroporphyrinogen-III synthase 49345 hemD 4239553 hemD Haemophilus somnus 129PT uroporphyrinogen-III synthase YP_718251.1 48677 D 205914 CDS YP_718252.1 113460195 4239554 49546..50745 1 NC_008309.1 uroporphyrin-III C-methyltransferase 50745 hemX 4239554 hemX Haemophilus somnus 129PT uroporphyrin-III C-methyltransferase YP_718252.1 49546 D 205914 CDS YP_718253.1 113460196 4239555 50760..52037 1 NC_008309.1 porphyrin biosynthesis protein 52037 hemY 4239555 hemY Haemophilus somnus 129PT porphyrin biosynthesis protein YP_718253.1 50760 D 205914 CDS YP_718254.1 113460197 4239556 complement(52092..53078) 1 NC_008309.1 tRNA-dihydrouridine synthase A 53078 dusA 4239556 dusA Haemophilus somnus 129PT tRNA-dihydrouridine synthase A YP_718254.1 52092 R 205914 CDS YP_718255.1 113460198 4239557 complement(53491..55044) 1 NC_008309.1 autoinducer-2 (AI-2) kinase 55044 4239557 HS_0049 Haemophilus somnus 129PT autoinducer-2 (AI-2) kinase YP_718255.1 53491 R 205914 CDS YP_718256.1 113460199 4239558 complement(55098..56057) 1 NC_008309.1 sorbitol operon transcriptional regulator 56057 4239558 HS_0050 Haemophilus somnus 129PT sorbitol operon transcriptional regulator YP_718256.1 55098 R 205914 CDS YP_718257.1 113460200 4239559 56274..57782 1 NC_008309.1 ABC transporter ATP-binding, sugar transport 57782 ego 4239559 ego Haemophilus somnus 129PT ABC transporter ATP-binding, sugar transport YP_718257.1 56274 D 205914 CDS YP_718258.1 113460201 4239560 57791..58789 1 NC_008309.1 sugar ABC transporter permease 58789 4239560 HS_0052 Haemophilus somnus 129PT sugar ABC transporter permease YP_718258.1 57791 D 205914 CDS YP_718259.1 113460202 4239561 58786..59769 1 NC_008309.1 sugar ABC transporter permease 59769 4239561 HS_0053 Haemophilus somnus 129PT sugar ABC transporter permease YP_718259.1 58786 D 205914 CDS YP_718260.1 113460203 4239562 59882..60901 1 NC_008309.1 sugar ABC transporter solute-binding protein 60901 4239562 HS_0054 Haemophilus somnus 129PT sugar ABC transporter solute-binding protein YP_718260.1 59882 D 205914 CDS YP_718261.1 113460204 4239563 60920..61798 1 NC_008309.1 aldolase 61798 4239563 HS_0055 Haemophilus somnus 129PT aldolase YP_718261.1 60920 D 205914 CDS YP_718262.1 113460205 4239564 61864..62166 1 NC_008309.1 autoinducer-2 (AI-2) modifying protein LsrG 62166 4239564 HS_0056 Haemophilus somnus 129PT autoinducer-2 (AI-2) modifying protein LsrG YP_718262.1 61864 D 205914 CDS YP_718263.1 113460206 4239565 62159..62869 1 NC_008309.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 62869 rpe 4239565 rpe Haemophilus somnus 129PT ribulose-phosphate 3-epimerase YP_718263.1 62159 D 205914 CDS YP_718264.1 113460207 4239566 63132..63443 1 NC_008309.1 SSU ribosomal protein S10P 63443 rpsJ 4239566 rpsJ Haemophilus somnus 129PT SSU ribosomal protein S10P YP_718264.1 63132 D 205914 CDS YP_718265.1 113460208 4239567 63460..64086 1 NC_008309.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 64086 rplC 4239567 rplC Haemophilus somnus 129PT 50S ribosomal protein L3 YP_718265.1 63460 D 205914 CDS YP_718266.1 113460209 4239568 64102..64704 1 NC_008309.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 64704 rplD 4239568 rplD Haemophilus somnus 129PT 50S ribosomal protein L4 YP_718266.1 64102 D 205914 CDS YP_718267.1 113460210 4239569 64701..65006 1 NC_008309.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 65006 rplW 4239569 rplW Haemophilus somnus 129PT 50S ribosomal protein L23 YP_718267.1 64701 D 205914 CDS YP_718268.1 113460211 4239570 65027..65848 1 NC_008309.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 65848 rplB 4239570 rplB Haemophilus somnus 129PT 50S ribosomal protein L2 YP_718268.1 65027 D 205914 CDS YP_718269.1 113460212 4239571 65875..66150 1 NC_008309.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 66150 rpsS 4239571 rpsS Haemophilus somnus 129PT 30S ribosomal protein S19 YP_718269.1 65875 D 205914 CDS YP_718270.1 113460213 4239572 66161..66493 1 NC_008309.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 66493 rplV 4239572 rplV Haemophilus somnus 129PT 50S ribosomal protein L22 YP_718270.1 66161 D 205914 CDS YP_718271.1 113460214 4239573 66510..67217 1 NC_008309.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 67217 rpsC 4239573 rpsC Haemophilus somnus 129PT 30S ribosomal protein S3 YP_718271.1 66510 D 205914 CDS YP_718272.1 113460215 4239574 67231..67641 1 NC_008309.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 67641 rplP 4239574 rplP Haemophilus somnus 129PT 50S ribosomal protein L16 YP_718272.1 67231 D 205914 CDS YP_718273.1 113460216 4239575 67641..67832 1 NC_008309.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 67832 rpmC 4239575 rpmC Haemophilus somnus 129PT 50S ribosomal protein L29 YP_718273.1 67641 D 205914 CDS YP_718274.1 113460217 4239576 67832..68086 1 NC_008309.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 68086 rpsQ 4239576 rpsQ Haemophilus somnus 129PT 30S ribosomal protein S17 YP_718274.1 67832 D 205914 CDS YP_718275.1 113460218 4239577 68283..70889 1 NC_008309.1 iron-regulated outer membrane protein 70889 irp 4239577 irp Haemophilus somnus 129PT iron-regulated outer membrane protein YP_718275.1 68283 D 205914 CDS YP_718276.1 113460219 4239578 71086..71457 1 NC_008309.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 71457 rplN 4239578 rplN Haemophilus somnus 129PT 50S ribosomal protein L14 YP_718276.1 71086 D 205914 CDS YP_718277.1 113460220 4239579 71470..71781 1 NC_008309.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 71781 rplX 4239579 rplX Haemophilus somnus 129PT 50S ribosomal protein L24 YP_718277.1 71470 D 205914 CDS YP_718278.1 113460221 4239580 71799..72338 1 NC_008309.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 72338 rplE 4239580 rplE Haemophilus somnus 129PT 50S ribosomal protein L5 YP_718278.1 71799 D 205914 CDS YP_718279.1 113460222 4239581 72350..72655 1 NC_008309.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 72655 rpsN 4239581 rpsN Haemophilus somnus 129PT 30S ribosomal protein S14 YP_718279.1 72350 D 205914 CDS YP_718280.1 113460223 4239582 72692..73084 1 NC_008309.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 73084 rpsH 4239582 rpsH Haemophilus somnus 129PT 30S ribosomal protein S8 YP_718280.1 72692 D 205914 CDS YP_718281.1 113460224 4239583 73101..73634 1 NC_008309.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 73634 rplF 4239583 rplF Haemophilus somnus 129PT 50S ribosomal protein L6 YP_718281.1 73101 D 205914 CDS YP_718282.1 113460225 4239584 73648..74001 1 NC_008309.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 74001 rplR 4239584 rplR Haemophilus somnus 129PT 50S ribosomal protein L18 YP_718282.1 73648 D 205914 CDS YP_718283.1 113460226 4239585 74017..74517 1 NC_008309.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 74517 rpsE 4239585 rpsE Haemophilus somnus 129PT 30S ribosomal protein S5 YP_718283.1 74017 D 205914 CDS YP_718284.1 113460227 4239586 74521..74703 1 NC_008309.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 74703 rpmD 4239586 rpmD Haemophilus somnus 129PT 50S ribosomal protein L30 YP_718284.1 74521 D 205914 CDS YP_718285.1 113460228 4239587 74708..75142 1 NC_008309.1 late assembly protein; 50S ribosomal protein L15 75142 rplO 4239587 rplO Haemophilus somnus 129PT 50S ribosomal protein L15 YP_718285.1 74708 D 205914 CDS YP_718286.1 113460229 4239588 75150..76475 1 NC_008309.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 76475 secY 4239588 secY Haemophilus somnus 129PT preprotein translocase subunit SecY YP_718286.1 75150 D 205914 CDS YP_718287.1 113461930 4239589 76503..76616 1 NC_008309.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 76616 rpmJ 4239589 rpmJ Haemophilus somnus 129PT 50S ribosomal protein L36 YP_718287.1 76503 D 205914 CDS YP_718288.1 113460230 4239590 76760..77116 1 NC_008309.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 77116 rpsM 4239590 rpsM Haemophilus somnus 129PT 30S ribosomal protein S13 YP_718288.1 76760 D 205914 CDS YP_718289.1 113460231 4239591 77132..77521 1 NC_008309.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 77521 rpsK 4239591 rpsK Haemophilus somnus 129PT 30S ribosomal protein S11 YP_718289.1 77132 D 205914 CDS YP_718290.1 113460232 4239592 77551..78171 1 NC_008309.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 78171 rpsD 4239592 rpsD Haemophilus somnus 129PT 30S ribosomal protein S4 YP_718290.1 77551 D 205914 CDS YP_718291.1 113460233 4239593 78204..79193 1 NC_008309.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 79193 rpoA 4239593 rpoA Haemophilus somnus 129PT DNA-directed RNA polymerase subunit alpha YP_718291.1 78204 D 205914 CDS YP_718292.1 113460234 4239594 79235..79621 1 NC_008309.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 79621 rplQ 4239594 rplQ Haemophilus somnus 129PT 50S ribosomal protein L17 YP_718292.1 79235 D 205914 CDS YP_718293.1 113460235 4239595 complement(79692..80378) 1 NC_008309.1 hypothetical protein 80378 4239595 HS_0086 Haemophilus somnus 129PT hypothetical protein YP_718293.1 79692 R 205914 CDS YP_718294.1 113460236 4239596 complement(80383..81660) 1 NC_008309.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 81660 nadR 4239596 nadR Haemophilus somnus 129PT nicotinamide-nucleotide adenylyltransferase YP_718294.1 80383 R 205914 CDS YP_718295.1 113460237 4239597 complement(81736..82026) 1 NC_008309.1 hypothetical protein 82026 4239597 HS_0088 Haemophilus somnus 129PT hypothetical protein YP_718295.1 81736 R 205914 CDS YP_718296.1 113460238 4239598 82323..82961 1 NC_008309.1 DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 82961 ribB 4239598 ribB Haemophilus somnus 129PT 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_718296.1 82323 D 205914 CDS YP_718297.1 113460239 4239599 complement(83118..83783) 1 NC_008309.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 83783 thiE 4239599 thiE Haemophilus somnus 129PT thiamine-phosphate pyrophosphorylase YP_718297.1 83118 R 205914 CDS YP_718298.1 113460240 4239600 complement(83783..84595) 1 NC_008309.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 84595 thiD 4239600 thiD Haemophilus somnus 129PT phosphomethylpyrimidine kinase YP_718298.1 83783 R 205914 CDS YP_718299.1 113460241 4239601 complement(84588..85388) 1 NC_008309.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 85388 thiM 4239601 thiM Haemophilus somnus 129PT hydroxyethylthiazole kinase YP_718299.1 84588 R 205914 CDS YP_718300.1 113460242 4239602 85961..86569 1 NC_008309.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 86569 recO 4239602 recO Haemophilus somnus 129PT DNA repair protein RecO YP_718300.1 85961 D 205914 CDS YP_718301.1 113460243 4239603 86590..87909 1 NC_008309.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 87909 rumA 4239603 rumA Haemophilus somnus 129PT 23S rRNA 5-methyluridine methyltransferase YP_718301.1 86590 D 205914 CDS YP_718302.1 113460244 4239604 87921..90158 1 NC_008309.1 GTP diphosphokinase 90158 relA 4239604 relA Haemophilus somnus 129PT GTP diphosphokinase YP_718302.1 87921 D 205914 CDS YP_718303.1 113460245 4239605 90183..90539 1 NC_008309.1 diacylglycerol kinase 90539 dgkA 4239605 dgkA Haemophilus somnus 129PT diacylglycerol kinase YP_718303.1 90183 D 205914 CDS YP_718304.1 113460246 4239607 92709..92966 1 NC_008309.1 hypothetical protein 92966 4239607 HS_0099 Haemophilus somnus 129PT hypothetical protein YP_718304.1 92709 D 205914 CDS YP_718305.1 113460247 4239608 93052..93987 1 NC_008309.1 transcriptional regulator 93987 4239608 HS_0100 Haemophilus somnus 129PT transcriptional regulator YP_718305.1 93052 D 205914 CDS YP_718306.1 113460248 4239609 94032..94934 1 NC_008309.1 hypothetical protein 94934 4239609 HS_0101 Haemophilus somnus 129PT hypothetical protein YP_718306.1 94032 D 205914 CDS YP_718307.1 113460249 4239611 95537..95761 1 NC_008309.1 hypothetical protein 95761 4239611 HS_0103 Haemophilus somnus 129PT hypothetical protein YP_718307.1 95537 D 205914 CDS YP_718308.1 113460250 4239612 95721..96155 1 NC_008309.1 hypothetical protein 96155 4239612 HS_0104 Haemophilus somnus 129PT hypothetical protein YP_718308.1 95721 D 205914 CDS YP_718309.1 113460251 4239613 96182..97399 1 NC_008309.1 3-oxoacyl-[acyl-carrier-protein] synthase 97399 fabF 4239613 fabF Haemophilus somnus 129PT 3-oxoacyl-[acyl-carrier-protein] synthase YP_718309.1 96182 D 205914 CDS YP_718310.1 113460252 4239614 97401..97853 1 NC_008309.1 dehydratase 97853 4239614 HS_0106 Haemophilus somnus 129PT dehydratase YP_718310.1 97401 D 205914 CDS YP_718311.1 113460253 4239615 97853..98581 1 NC_008309.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 98581 fabG 4239615 fabG Haemophilus somnus 129PT 3-ketoacyl-(acyl-carrier-protein) reductase YP_718311.1 97853 D 205914 CDS YP_718312.1 113460254 4239616 98654..99892 1 NC_008309.1 3-oxoacyl-[acyl-carrier-protein] synthase II 99892 fab 4239616 fab Haemophilus somnus 129PT 3-oxoacyl-[acyl-carrier-protein] synthase II YP_718312.1 98654 D 205914 CDS YP_718313.1 113460255 4239617 100060..100812 1 NC_008309.1 hypothetical protein 100812 4239617 HS_0109 Haemophilus somnus 129PT hypothetical protein YP_718313.1 100060 D 205914 CDS YP_718314.1 113460256 4239618 100788..101549 1 NC_008309.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 101549 plsC 4239618 plsC Haemophilus somnus 129PT 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_718314.1 100788 D 205914 CDS YP_718315.1 113460257 4239619 101553..101810 1 NC_008309.1 acyl carrier protein 101810 acp 4239619 acp Haemophilus somnus 129PT acyl carrier protein YP_718315.1 101553 D 205914 CDS YP_718316.1 113460258 4239620 101826..102074 1 NC_008309.1 acyl carrier protein 102074 acp 4239620 acp Haemophilus somnus 129PT acyl carrier protein YP_718316.1 101826 D 205914 CDS YP_718317.1 113460259 4239621 102135..102515 1 NC_008309.1 3-hydroxymyristoyl/3-hydroxydecanoyl-[acyl- carrier-protein] dehydratase 102515 4239621 HS_0113 Haemophilus somnus 129PT 3-hydroxymyristoyl/3-hydroxydecanoyl-[acyl- carrier-protein] dehydratase YP_718317.1 102135 D 205914 CDS YP_718318.1 113460260 4239622 102625..103059 1 NC_008309.1 hypothetical protein 103059 4239622 HS_0114 Haemophilus somnus 129PT hypothetical protein YP_718318.1 102625 D 205914 CDS YP_718319.1 113460261 4239623 103052..104335 1 NC_008309.1 acyl-coenzyme A synthetase-like protein 104335 4239623 HS_0115 Haemophilus somnus 129PT acyl-coenzyme A synthetase-like protein YP_718319.1 103052 D 205914 CDS YP_718320.1 113460262 4239624 104332..105060 1 NC_008309.1 glycosyl transferase, group 2 family protein 105060 4239624 HS_0116 Haemophilus somnus 129PT glycosyl transferase, group 2 family protein YP_718320.1 104332 D 205914 CDS YP_718321.1 113460263 4239625 105057..105977 1 NC_008309.1 acyltransferase 105977 4239625 HS_0117 Haemophilus somnus 129PT acyltransferase YP_718321.1 105057 D 205914 CDS YP_718322.1 113460264 4239626 105959..106426 1 NC_008309.1 hypothetical protein 106426 4239626 HS_0118 Haemophilus somnus 129PT hypothetical protein YP_718322.1 105959 D 205914 CDS YP_718323.1 113460265 4239627 106506..106949 1 NC_008309.1 thioesterase 106949 4239627 HS_0119 Haemophilus somnus 129PT thioesterase YP_718323.1 106506 D 205914 CDS YP_718324.1 113460266 4239628 106960..107547 1 NC_008309.1 hypothetical protein 107547 4239628 HS_0120 Haemophilus somnus 129PT hypothetical protein YP_718324.1 106960 D 205914 CDS YP_718325.1 113460267 4239629 107556..109847 1 NC_008309.1 hypothetical protein 109847 4239629 HS_0121 Haemophilus somnus 129PT hypothetical protein YP_718325.1 107556 D 205914 CDS YP_718326.1 113460268 4239630 complement(109988..111220) 1 NC_008309.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 111220 serA 4239630 serA Haemophilus somnus 129PT D-3-phosphoglycerate dehydrogenase YP_718326.1 109988 R 205914 CDS YP_718327.1 113460269 4239631 complement(111246..111905) 1 NC_008309.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 111905 rpiA 4239631 rpiA Haemophilus somnus 129PT ribose-5-phosphate isomerase A YP_718327.1 111246 R 205914 CDS YP_718328.1 113460270 4239632 complement(112001..113179) 1 NC_008309.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 113179 4239632 HS_0124 Haemophilus somnus 129PT coproporphyrinogen III oxidase YP_718328.1 112001 R 205914 CDS YP_718329.1 113460271 4239633 complement(113179..113775) 1 NC_008309.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; deoxyribonucleotide triphosphate pyrophosphatase 113775 4239633 HS_0125 Haemophilus somnus 129PT deoxyribonucleotide triphosphate pyrophosphatase YP_718329.1 113179 R 205914 CDS YP_718330.1 113460272 4239634 complement(113965..114300) 1 NC_008309.1 competenc protein ComE 114300 comEA 4239634 comEA Haemophilus somnus 129PT competenc protein ComE YP_718330.1 113965 R 205914 CDS YP_718331.1 113460273 4239635 complement(114522..114911) 1 NC_008309.1 translation initiation inhibitor 114911 4239635 HS_0127 Haemophilus somnus 129PT translation initiation inhibitor YP_718331.1 114522 R 205914 CDS YP_718332.1 113460274 4239636 complement(114972..115553) 1 NC_008309.1 hypothetical protein 115553 4239636 HS_0128 Haemophilus somnus 129PT hypothetical protein YP_718332.1 114972 R 205914 CDS YP_718333.1 113460275 4239637 complement(115702..116709) 1 NC_008309.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I 116709 pabB 4239637 pabB Haemophilus somnus 129PT para-aminobenzoate synthase component I YP_718333.1 115702 R 205914 CDS YP_718334.1 113460276 4239638 116766..117335 1 NC_008309.1 catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis; anthranilate synthase component II 117335 trpG 4239638 trpG Haemophilus somnus 129PT anthranilate synthase component II YP_718334.1 116766 D 205914 CDS YP_718335.1 113460277 4239639 117488..117967 1 NC_008309.1 Dps family protein; DNA-binding stress protein 117967 4239639 HS_0131 Haemophilus somnus 129PT DNA-binding stress protein YP_718335.1 117488 D 205914 CDS YP_718336.1 113460278 4239640 complement(118067..119425) 1 NC_008309.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 119425 trmE 4239640 trmE Haemophilus somnus 129PT tRNA modification GTPase TrmE YP_718336.1 118067 R 205914 CDS YP_718337.1 113460279 4239641 complement(119511..121136) 1 NC_008309.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; inner membrane protein translocase component YidC 121136 oxaA 4239641 oxaA Haemophilus somnus 129PT inner membrane protein translocase component YidC YP_718337.1 119511 R 205914 CDS YP_718338.1 113460280 4239642 complement(121136..121396) 1 NC_008309.1 hypothetical protein 121396 4239642 HS_0134 Haemophilus somnus 129PT hypothetical protein YP_718338.1 121136 R 205914 CDS YP_718339.1 113460281 4239643 complement(121360..121719) 1 NC_008309.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 121719 rnpA 4239643 rnpA Haemophilus somnus 129PT ribonuclease P YP_718339.1 121360 R 205914 CDS YP_718340.1 113461931 4239644 complement(121734..121868) 1 NC_008309.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 121868 rpmH 4239644 rpmH Haemophilus somnus 129PT 50S ribosomal protein L34 YP_718340.1 121734 R 205914 CDS YP_718341.1 113460282 4239645 122211..123569 1 NC_008309.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 123569 dnaA 4239645 dnaA Haemophilus somnus 129PT chromosomal replication initiation protein YP_718341.1 122211 D 205914 CDS YP_718342.1 113460283 4239646 123581..124681 1 NC_008309.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 124681 dnaN 4239646 dnaN Haemophilus somnus 129PT DNA polymerase III subunit beta YP_718342.1 123581 D 205914 CDS YP_718343.1 113460284 4239647 124685..125761 1 NC_008309.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 125761 recF 4239647 recF Haemophilus somnus 129PT recombination protein F YP_718343.1 124685 D 205914 CDS YP_718344.1 113460285 4239648 complement(125818..126462) 1 NC_008309.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 126462 crp 4239648 crp Haemophilus somnus 129PT cAMP-regulatory protein YP_718344.1 125818 R 205914 CDS YP_718345.1 113460286 4239649 complement(126475..126714) 1 NC_008309.1 hypothetical protein 126714 4239649 HS_0140 Haemophilus somnus 129PT hypothetical protein YP_718345.1 126475 R 205914 CDS YP_718346.1 113460287 4239650 complement(126734..127393) 1 NC_008309.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 127393 slmA 4239650 slmA Haemophilus somnus 129PT nucleoid occlusion protein YP_718346.1 126734 R 205914 CDS YP_718347.1 113460288 4239651 complement(127393..127848) 1 NC_008309.1 dUTPase or desoxyuridine 5'-triphosphate nucleotidohydrolase; catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 127848 dut 4239651 dut Haemophilus somnus 129PT deoxyuridine 5'-triphosphate nucleotidohydrolase YP_718347.1 127393 R 205914 CDS YP_718348.1 113460289 4239652 complement(127845..129071) 1 NC_008309.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 129071 coaBC 4239652 coaBC Haemophilus somnus 129PT bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_718348.1 127845 R 205914 CDS YP_718349.1 113460290 4239653 129244..129912 1 NC_008309.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 129912 radC 4239653 radC Haemophilus somnus 129PT DNA repair protein RadC YP_718349.1 129244 D 205914 CDS YP_718350.1 113460291 4239654 130133..130369 1 NC_008309.1 required for 70S ribosome assembly; 50S ribosomal protein L28 130369 rpmB 4239654 rpmB Haemophilus somnus 129PT 50S ribosomal protein L28 YP_718350.1 130133 D 205914 CDS YP_718351.1 113461932 4239655 130381..130551 1 NC_008309.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 130551 rpmG 4239655 rpmG Haemophilus somnus 129PT 50S ribosomal protein L33 YP_718351.1 130381 D 205914 CDS YP_718352.1 113460292 4239656 130656..131468 1 NC_008309.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 131468 mutM 4239656 mutM Haemophilus somnus 129PT formamidopyrimidine-DNA glycosylase YP_718352.1 130656 D 205914 CDS YP_718353.1 113460293 4239657 131560..133236 1 NC_008309.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 133236 ilvG 4239657 ilvG Haemophilus somnus 129PT acetolactate synthase 2 catalytic subunit YP_718353.1 131560 D 205914 CDS YP_718354.1 113460294 4239658 133240..133458 1 NC_008309.1 acetolactate synthase 2 regulatory subunit 133458 ilvM 4239658 ilvM Haemophilus somnus 129PT acetolactate synthase 2 regulatory subunit YP_718354.1 133240 D 205914 CDS YP_718355.1 113460295 4239659 133524..134186 1 NC_008309.1 hypothetical protein 134186 4239659 HS_0149 Haemophilus somnus 129PT hypothetical protein YP_718355.1 133524 D 205914 CDS YP_718356.1 113460296 4239660 134303..134806 1 NC_008309.1 chorismate lyase 134806 ubiC 4239660 ubiC Haemophilus somnus 129PT chorismate lyase YP_718356.1 134303 D 205914 CDS YP_718357.1 113460297 4239661 134810..137224 1 NC_008309.1 exoribonuclease II 137224 rnr 4239661 rnr Haemophilus somnus 129PT exoribonuclease II YP_718357.1 134810 D 205914 CDS YP_718358.1 113460298 4239662 137231..137968 1 NC_008309.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 137968 4239662 HS_0152 Haemophilus somnus 129PT 23S rRNA (guanosine-2'-O-)-methyltransferase YP_718358.1 137231 D 205914 CDS YP_718359.1 113460299 4239663 complement(138109..138654) 1 NC_008309.1 TPR repeat-containing protein 138654 4239663 HS_0153 Haemophilus somnus 129PT TPR repeat-containing protein YP_718359.1 138109 R 205914 CDS YP_718360.1 113460300 4239664 complement(138698..139495) 1 NC_008309.1 catalyzes the O-acetylation of serine; serine acetyltransferase 139495 cysE 4239664 cysE Haemophilus somnus 129PT serine acetyltransferase YP_718360.1 138698 R 205914 CDS YP_718361.1 113460301 4239665 complement(139497..140513) 1 NC_008309.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 140513 gpsA 4239665 gpsA Haemophilus somnus 129PT NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_718361.1 139497 R 205914 CDS YP_718362.1 113460302 4239666 complement(140580..141095) 1 NC_008309.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 141095 secB 4239666 secB Haemophilus somnus 129PT preprotein translocase subunit SecB YP_718362.1 140580 R 205914 CDS YP_718363.1 113460303 4239667 complement(141106..141552) 1 NC_008309.1 hypothetical protein 141552 4239667 HS_0157 Haemophilus somnus 129PT hypothetical protein YP_718363.1 141106 R 205914 CDS YP_718364.1 113460304 4239668 141796..143106 1 NC_008309.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter 143106 dcuB 4239668 dcuB Haemophilus somnus 129PT anaerobic C4-dicarboxylate transporter YP_718364.1 141796 D 205914 CDS YP_718365.1 113460305 4239669 complement(143179..144039) 1 NC_008309.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase 144039 ubiA 4239669 ubiA Haemophilus somnus 129PT 4-hydroxybenzoate octaprenyltransferase YP_718365.1 143179 R 205914 CDS YP_718366.1 113460306 4239670 144024..144500 1 NC_008309.1 thiosulfate sulfurtransferase 144500 glpE 4239670 glpE Haemophilus somnus 129PT thiosulfate sulfurtransferase YP_718366.1 144024 D 205914 CDS YP_718367.1 113460307 4239671 complement(144524..144862) 1 NC_008309.1 hypothetical protein 144862 4239671 HS_0161 Haemophilus somnus 129PT hypothetical protein YP_718367.1 144524 R 205914 CDS YP_718368.1 113460308 4239672 144882..145751 1 NC_008309.1 rhomboid family GlpG protein 145751 glpG 4239672 glpG Haemophilus somnus 129PT rhomboid family GlpG protein YP_718368.1 144882 D 205914 CDS YP_718369.1 113460309 4239673 145978..146502 1 NC_008309.1 hypothetical protein 146502 4239673 HS_0163 Haemophilus somnus 129PT hypothetical protein YP_718369.1 145978 D 205914 CDS YP_718370.1 113461933 4239674 146520..146690 1 NC_008309.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 146690 rpmF 4239674 rpmF Haemophilus somnus 129PT 50S ribosomal protein L32 YP_718370.1 146520 D 205914 CDS YP_718371.1 113460310 4239675 146757..147089 1 NC_008309.1 fatty acid/phospholipid synthesis protein 147089 plsX 4239675 plsX Haemophilus somnus 129PT fatty acid/phospholipid synthesis protein YP_718371.1 146757 D 205914 CDS YP_718372.1 113460311 4239676 147142..148092 1 NC_008309.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 148092 fabH 4239676 fabH Haemophilus somnus 129PT 3-oxoacyl-(acyl carrier protein) synthase III YP_718372.1 147142 D 205914 CDS YP_718373.1 113460312 4239677 148136..149074 1 NC_008309.1 [Acyl-carrier-protein] S-malonyltransferase 149074 fabD 4239677 fabD Haemophilus somnus 129PT [Acyl-carrier-protein] S-malonyltransferase YP_718373.1 148136 D 205914 CDS YP_718374.1 113460313 4239678 149128..149853 1 NC_008309.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase 149853 fabG 4239678 fabG Haemophilus somnus 129PT 3-ketoacyl-(acyl-carrier-protein) reductase YP_718374.1 149128 D 205914 CDS YP_718375.1 113460314 4239679 150107..150337 1 NC_008309.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 150337 acpP 4239679 acpP Haemophilus somnus 129PT acyl carrier protein YP_718375.1 150107 D 205914 CDS YP_718376.1 113460315 4239680 150486..150914 1 NC_008309.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 150914 rplK 4239680 rplK Haemophilus somnus 129PT 50S ribosomal protein L11 YP_718376.1 150486 D 205914 CDS YP_718377.1 113460316 4239681 150919..151608 1 NC_008309.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 151608 rplA 4239681 rplA Haemophilus somnus 129PT 50S ribosomal protein L1 YP_718377.1 150919 D 205914 CDS YP_718378.1 113460317 4239682 151892..152383 1 NC_008309.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 152383 rplJ 4239682 rplJ Haemophilus somnus 129PT 50S ribosomal protein L10 YP_718378.1 151892 D 205914 CDS YP_718379.1 113460318 4239683 152435..152803 1 NC_008309.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 152803 rplL 4239683 rplL Haemophilus somnus 129PT 50S ribosomal protein L7/L12 YP_718379.1 152435 D 205914 CDS YP_718380.1 113460319 4239684 complement(153043..154242) 1 NC_008309.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 154242 rho 4239684 rho Haemophilus somnus 129PT transcription termination factor Rho YP_718380.1 153043 R 205914 CDS YP_718381.1 113460320 4239685 154500..155759 1 NC_008309.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB 155759 rhlB 4239685 rhlB Haemophilus somnus 129PT ATP-dependent RNA helicase RhlB YP_718381.1 154500 D 205914 CDS YP_718382.1 113460321 4239686 155873..156559 1 NC_008309.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 156559 rpe 4239686 rpe Haemophilus somnus 129PT ribulose-phosphate 3-epimerase YP_718382.1 155873 D 205914 CDS YP_718383.1 113460322 4239687 156556..157230 1 NC_008309.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase 157230 gph 4239687 gph Haemophilus somnus 129PT phosphoglycolate phosphatase YP_718383.1 156556 D 205914 CDS YP_718384.1 113460323 4239688 157240..158241 1 NC_008309.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 158241 trpS 4239688 trpS Haemophilus somnus 129PT tryptophanyl-tRNA synthetase YP_718384.1 157240 D 205914 CDS YP_718385.1 113460324 4239689 complement(158460..158900) 1 NC_008309.1 hypothetical protein 158900 4239689 HS_0178 Haemophilus somnus 129PT hypothetical protein YP_718385.1 158460 R 205914 CDS YP_718386.1 113460325 4239690 158953..159555 1 NC_008309.1 phosphatase 159555 4239690 HS_0179 Haemophilus somnus 129PT phosphatase YP_718386.1 158953 D 205914 CDS YP_718387.1 113460326 4239691 complement(159556..159843) 1 NC_008309.1 hypothetical protein 159843 4239691 HS_0180 Haemophilus somnus 129PT hypothetical protein YP_718387.1 159556 R 205914 CDS YP_718388.1 113460327 4239692 complement(159934..162681) 1 NC_008309.1 TonB-dependent outer membrane receptor 162681 4239692 HS_0181 Haemophilus somnus 129PT TonB-dependent outer membrane receptor YP_718388.1 159934 R 205914 CDS YP_718389.1 113460328 4239693 complement(162913..163530) 1 NC_008309.1 hypothetical protein 163530 4239693 HS_0182 Haemophilus somnus 129PT hypothetical protein YP_718389.1 162913 R 205914 CDS YP_718390.1 113460329 4239694 163772..165307 1 NC_008309.1 threonine dehydratase; threonine deaminase; threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 165307 ilvA 4239694 ilvA Haemophilus somnus 129PT threonine dehydratase YP_718390.1 163772 D 205914 CDS YP_718391.1 113460330 4239695 complement(165383..166315) 1 NC_008309.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 166315 ispH 4239695 ispH Haemophilus somnus 129PT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_718391.1 165383 R 205914 CDS YP_718392.1 113460331 4239696 complement(166327..166824) 1 NC_008309.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 166824 lspA 4239696 lspA Haemophilus somnus 129PT lipoprotein signal peptidase YP_718392.1 166327 R 205914 CDS YP_718393.1 113460332 4239697 complement(166899..169712) 1 NC_008309.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 169712 ileS 4239697 ileS Haemophilus somnus 129PT isoleucyl-tRNA synthetase YP_718393.1 166899 R 205914 CDS YP_718394.1 113460333 4239698 complement(169731..170279) 1 NC_008309.1 hypothetical protein 170279 4239698 HS_0187 Haemophilus somnus 129PT hypothetical protein YP_718394.1 169731 R 205914 CDS YP_718395.1 113460334 4239699 complement(170377..171321) 1 NC_008309.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 171321 ribF 4239699 ribF Haemophilus somnus 129PT bifunctional riboflavin kinase/FMN adenylyltransferase YP_718395.1 170377 R 205914 CDS YP_718396.1 113460335 4239700 complement(171407..171892) 1 NC_008309.1 dihydrofolate reductase 171892 folA 4239700 folA Haemophilus somnus 129PT dihydrofolate reductase YP_718396.1 171407 R 205914 CDS YP_718397.1 113460336 4239701 complement(171945..172424) 1 NC_008309.1 hypothetical protein 172424 4239701 HS_0190 Haemophilus somnus 129PT hypothetical protein YP_718397.1 171945 R 205914 CDS YP_718398.1 113460337 4239702 complement(172412..173200) 1 NC_008309.1 hypothetical protein 173200 4239702 HS_0191 Haemophilus somnus 129PT hypothetical protein YP_718398.1 172412 R 205914 CDS YP_718399.1 113460338 4239703 173358..174470 1 NC_008309.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 174470 proB 4239703 proB Haemophilus somnus 129PT gamma-glutamyl kinase YP_718399.1 173358 D 205914 CDS YP_718400.1 113460339 4239704 complement(174631..175185) 1 NC_008309.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 175185 nusG 4239704 nusG Haemophilus somnus 129PT transcription antitermination protein NusG YP_718400.1 174631 R 205914 CDS YP_718401.1 113460340 4239705 complement(175187..175594) 1 NC_008309.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 175594 secE 4239705 secE Haemophilus somnus 129PT preprotein translocase subunit SecE YP_718401.1 175187 R 205914 CDS YP_718402.1 113460341 4239706 complement(175770..176954) 1 NC_008309.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 176954 tufA 4239706 tufA Haemophilus somnus 129PT elongation factor Tu YP_718402.1 175770 R 205914 CDS YP_718403.1 113460342 4239711 177659..178612 1 NC_008309.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 178612 coaA 4239711 coaA Haemophilus somnus 129PT pantothenate kinase YP_718403.1 177659 D 205914 CDS YP_718404.1 113460343 4239712 complement(178666..179874) 1 NC_008309.1 sodium/glutamate symporter 179874 gltS 4239712 gltS Haemophilus somnus 129PT sodium/glutamate symporter YP_718404.1 178666 R 205914 CDS YP_718405.1 113460344 4239713 complement(180055..183531) 1 NC_008309.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 183531 dnaE 4239713 dnaE Haemophilus somnus 129PT DNA polymerase III subunit alpha YP_718405.1 180055 R 205914 CDS YP_718406.1 113460345 4239714 complement(183692..186262) 1 NC_008309.1 ATP-dependent Clp protease subunit B 186262 clpB 4239714 clpB Haemophilus somnus 129PT ATP-dependent Clp protease subunit B YP_718406.1 183692 R 205914 CDS YP_718407.1 113460346 4239715 complement(186446..186907) 1 NC_008309.1 hypothetical protein 186907 4239715 HS_0200 Haemophilus somnus 129PT hypothetical protein YP_718407.1 186446 R 205914 CDS YP_718408.1 113460347 4239716 187091..187348 1 NC_008309.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 187348 oadG 4239716 oadG Haemophilus somnus 129PT oxaloacetate decarboxylase subunit gamma YP_718408.1 187091 D 205914 CDS YP_718409.1 113460348 4239717 187361..189160 1 NC_008309.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 189160 oadA 4239717 oadA Haemophilus somnus 129PT oxaloacetate decarboxylase YP_718409.1 187361 D 205914 CDS YP_718410.1 113460349 4239718 189212..190477 1 NC_008309.1 oxaloacetate decarboxylase subunit beta 190477 oadB 4239718 oadB Haemophilus somnus 129PT oxaloacetate decarboxylase subunit beta YP_718410.1 189212 D 205914 CDS YP_718411.1 113460350 4239719 complement(190550..191503) 1 NC_008309.1 transaldolase B 191503 tal 4239719 tal Haemophilus somnus 129PT transaldolase B YP_718411.1 190550 R 205914 CDS YP_718412.1 113460351 4239720 191691..194036 1 NC_008309.1 determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 194036 imp 4239720 imp Haemophilus somnus 129PT organic solvent tolerance protein YP_718412.1 191691 D 205914 CDS YP_718413.1 113460352 4239721 complement(194113..195192) 1 NC_008309.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 195192 fba 4239721 fba Haemophilus somnus 129PT fructose-bisphosphate aldolase YP_718413.1 194113 R 205914 CDS YP_718414.1 113460353 4239722 complement(195284..196438) 1 NC_008309.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 196438 pgk 4239722 pgk Haemophilus somnus 129PT phosphoglycerate kinase YP_718414.1 195284 R 205914 CDS YP_718415.1 113460354 4239723 196692..196952 1 NC_008309.1 ferredoxin 196952 fdx 4239723 fdx Haemophilus somnus 129PT ferredoxin YP_718415.1 196692 D 205914 CDS YP_718416.1 113460355 4239724 complement(197001..212432) 1 NC_008309.1 large adhesin 212432 hsf 4239724 hsf Haemophilus somnus 129PT large adhesin YP_718416.1 197001 R 205914 CDS YP_718417.1 113460356 4239725 complement(212868..213617) 1 NC_008309.1 polar amino acid ABC transporter ATP-binding protein 213617 4239725 HS_0210 Haemophilus somnus 129PT polar amino acid ABC transporter ATP-binding protein YP_718417.1 212868 R 205914 CDS YP_718418.1 113460357 4239726 complement(213631..214347) 1 NC_008309.1 amino acid ABC transporter permease 214347 4239726 HS_0211 Haemophilus somnus 129PT amino acid ABC transporter permease YP_718418.1 213631 R 205914 CDS YP_718419.1 113460358 4239727 complement(214337..215119) 1 NC_008309.1 amino acid ABC transporter substrate-binding 215119 4239727 HS_0212 Haemophilus somnus 129PT amino acid ABC transporter substrate-binding YP_718419.1 214337 R 205914 CDS YP_718420.1 113460359 4239728 complement(215433..215996) 1 NC_008309.1 hypothetical protein 215996 4239728 HS_0213 Haemophilus somnus 129PT hypothetical protein YP_718420.1 215433 R 205914 CDS YP_718421.1 113460360 4239729 complement(216015..216398) 1 NC_008309.1 hypothetical protein 216398 4239729 HS_0214 Haemophilus somnus 129PT hypothetical protein YP_718421.1 216015 R 205914 CDS YP_718422.1 113460361 4239730 complement(216401..216868) 1 NC_008309.1 hypothetical protein 216868 4239730 HS_0215 Haemophilus somnus 129PT hypothetical protein YP_718422.1 216401 R 205914 CDS YP_718423.1 113460362 4239731 complement(217020..218141) 1 NC_008309.1 hypothetical protein 218141 mloA 4239731 mloA Haemophilus somnus 129PT hypothetical protein YP_718423.1 217020 R 205914 CDS YP_718424.1 113460363 4239732 complement(218189..218512) 1 NC_008309.1 hypothetical protein 218512 4239732 HS_0217 Haemophilus somnus 129PT hypothetical protein YP_718424.1 218189 R 205914 CDS YP_718425.1 113460364 4239733 219081..219368 1 NC_008309.1 hypothetical protein 219368 4239733 HS_0218 Haemophilus somnus 129PT hypothetical protein YP_718425.1 219081 D 205914 CDS YP_718426.1 113460365 4239734 complement(219532..220920) 1 NC_008309.1 NadC family transporter 220920 4239734 HS_0219 Haemophilus somnus 129PT NadC family transporter YP_718426.1 219532 R 205914 CDS YP_718427.1 113460366 4239735 complement(221104..221604) 1 NC_008309.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 221604 rraA 4239735 rraA Haemophilus somnus 129PT ribonuclease activity regulator protein RraA YP_718427.1 221104 R 205914 CDS YP_718428.1 113460367 4239736 complement(221651..222565) 1 NC_008309.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 222565 menA 4239736 menA Haemophilus somnus 129PT 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_718428.1 221651 R 205914 CDS YP_718429.1 113460368 4239737 222663..223385 1 NC_008309.1 hypothetical protein 223385 4239737 HS_0222 Haemophilus somnus 129PT hypothetical protein YP_718429.1 222663 D 205914 CDS YP_718430.1 113460369 4239738 223545..223964 1 NC_008309.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 223964 rbsD 4239738 rbsD Haemophilus somnus 129PT D-ribose pyranase YP_718430.1 223545 D 205914 CDS YP_718431.1 113460370 4239739 224095..224280 1 NC_008309.1 transposase 224280 4239739 HS_0224 Haemophilus somnus 129PT transposase YP_718431.1 224095 D 205914 CDS YP_718432.1 113461934 4239740 224451..224690 1 NC_008309.1 transposase 224690 4239740 HS_0224a Haemophilus somnus 129PT transposase YP_718432.1 224451 D 205914 CDS YP_718433.1 113460371 4239741 224788..225741 1 NC_008309.1 catalyzes the formation of D-ribose 5-phosphate from ribose; ribokinase 225741 rbsK 4239741 rbsK Haemophilus somnus 129PT ribokinase YP_718433.1 224788 D 205914 CDS YP_718434.1 113460372 4239742 225762..226772 1 NC_008309.1 LacI family transcription regulator 226772 rbsR 4239742 rbsR Haemophilus somnus 129PT LacI family transcription regulator YP_718434.1 225762 D 205914 CDS YP_718435.1 113460373 4239743 complement(226801..227187) 1 NC_008309.1 small protein A 227187 smpA 4239743 smpA Haemophilus somnus 129PT small protein A YP_718435.1 226801 R 205914 CDS YP_718436.1 113460374 4239744 complement(227282..228295) 1 NC_008309.1 nucleoid-associated protein NdpA 228295 ndpA 4239744 ndpA Haemophilus somnus 129PT nucleoid-associated protein NdpA YP_718436.1 227282 R 205914 CDS YP_718437.1 113460375 4239745 228413..228634 1 NC_008309.1 hypothetical protein 228634 4239745 HS_0229 Haemophilus somnus 129PT hypothetical protein YP_718437.1 228413 D 205914 CDS YP_718438.1 113460376 4239746 228636..230378 1 NC_008309.1 hypothetical protein 230378 4239746 HS_0230 Haemophilus somnus 129PT hypothetical protein YP_718438.1 228636 D 205914 CDS YP_718439.1 113460377 4239747 complement(230592..231308) 1 NC_008309.1 Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 231308 sfsA 4239747 sfsA Haemophilus somnus 129PT sugar fermentation stimulation protein A YP_718439.1 230592 R 205914 CDS YP_718440.1 113460378 4239748 231517..233049 1 NC_008309.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 233049 pntA 4239748 pntA Haemophilus somnus 129PT NAD(P) transhydrogenase subunit alpha YP_718440.1 231517 D 205914 CDS YP_718441.1 113460379 4239749 233062..234522 1 NC_008309.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 234522 pntB 4239749 pntB Haemophilus somnus 129PT pyridine nucleotide transhydrogenase YP_718441.1 233062 D 205914 CDS YP_718442.1 113460380 4239750 234603..236252 1 NC_008309.1 phosphoglycerol transferase 236252 4239750 HS_0234 Haemophilus somnus 129PT phosphoglycerol transferase YP_718442.1 234603 D 205914 CDS YP_718443.1 113460381 4239751 236311..236580 1 NC_008309.1 galactokinase 236580 galK 4239751 galK Haemophilus somnus 129PT galactokinase YP_718443.1 236311 D 205914 CDS YP_718444.1 113460382 4239752 236574..237617 1 NC_008309.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 237617 galM 4239752 galM Haemophilus somnus 129PT aldose 1-epimerase YP_718444.1 236574 D 205914 CDS YP_718445.1 113460383 4239753 237772..238665 1 NC_008309.1 possible hemolysin-related protein; magnesium and cobalt efflux protein 238665 corC 4239753 corC Haemophilus somnus 129PT magnesium and cobalt efflux protein YP_718445.1 237772 D 205914 CDS YP_718446.1 113460384 4239754 238662..240194 1 NC_008309.1 Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 240194 lnt 4239754 lnt Haemophilus somnus 129PT apolipoprotein N-acyltransferase YP_718446.1 238662 D 205914 CDS YP_718447.1 113460385 4239755 complement(240202..240933) 1 NC_008309.1 TatD family deoxyribonuclease 240933 4239755 HS_0239 Haemophilus somnus 129PT TatD family deoxyribonuclease YP_718447.1 240202 R 205914 CDS YP_718448.1 113460386 4239756 241113..241613 1 NC_008309.1 hypothetical protein 241613 4239756 HS_0240 Haemophilus somnus 129PT hypothetical protein YP_718448.1 241113 D 205914 CDS YP_718449.1 113460387 4239757 complement(241185..241694) 1 NC_008309.1 peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase) 241694 ppiB 4239757 ppiB Haemophilus somnus 129PT peptidylprolyl isomerase (peptidyl-prolyl cis-trans isomerase) YP_718449.1 241185 R 205914 CDS YP_718450.1 113460388 4239758 241833..243212 1 NC_008309.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 243212 cysS 4239758 cysS Haemophilus somnus 129PT cysteinyl-tRNA synthetase YP_718450.1 241833 D 205914 CDS YP_718451.1 113460389 4239759 complement(243264..243995) 1 NC_008309.1 hypothetical protein 243995 4239759 HS_0243 Haemophilus somnus 129PT hypothetical protein YP_718451.1 243264 R 205914 CDS YP_718452.1 113460390 4239760 complement(244128..245108) 1 NC_008309.1 octaprenyl-diphosphate synthase 245108 ispB 4239760 ispB Haemophilus somnus 129PT octaprenyl-diphosphate synthase YP_718452.1 244128 R 205914 CDS YP_718453.1 113460391 4239761 245340..245651 1 NC_008309.1 50S ribosomal protein L21 245651 rplU 4239761 rplU Haemophilus somnus 129PT 50S ribosomal protein L21 YP_718453.1 245340 D 205914 CDS YP_718454.1 113460392 4239762 245672..245929 1 NC_008309.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 245929 rpmA 4239762 rpmA Haemophilus somnus 129PT 50S ribosomal protein L27 YP_718454.1 245672 D 205914 CDS YP_718455.1 113460393 4239763 246065..246985 1 NC_008309.1 hypothetical protein 246985 4239763 HS_0247 Haemophilus somnus 129PT hypothetical protein YP_718455.1 246065 D 205914 CDS YP_718456.1 113460394 4239764 246995..248173 1 NC_008309.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 248173 obgE 4239764 obgE Haemophilus somnus 129PT GTPase ObgE YP_718456.1 246995 D 205914 CDS YP_718457.1 113460395 4239765 complement(248415..248984) 1 NC_008309.1 N-acetyl-anhydromuranmyl-L-alanine amidase 248984 ampD 4239765 ampD Haemophilus somnus 129PT N-acetyl-anhydromuranmyl-L-alanine amidase YP_718457.1 248415 R 205914 CDS YP_718458.1 113460396 4239766 249107..249565 1 NC_008309.1 fimbrial subunit 249565 pilA 4239766 pilA Haemophilus somnus 129PT fimbrial subunit YP_718458.1 249107 D 205914 CDS YP_718459.1 113460397 4239767 249639..250448 1 NC_008309.1 With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 250448 artP 4239767 artP Haemophilus somnus 129PT arginine transporter ATP-binding subunit YP_718459.1 249639 D 205914 CDS YP_718460.1 113460398 4239768 250466..251191 1 NC_008309.1 arginine ABC transporter substrate-binding protein 251191 artI 4239768 artI Haemophilus somnus 129PT arginine ABC transporter substrate-binding protein YP_718460.1 250466 D 205914 CDS YP_718461.1 113460399 4239769 251196..251867 1 NC_008309.1 with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 251867 artQ 4239769 artQ Haemophilus somnus 129PT arginine transporter permease subunit ArtQ YP_718461.1 251196 D 205914 CDS YP_718462.1 113460400 4239770 251878..252561 1 NC_008309.1 with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 252561 artM 4239770 artM Haemophilus somnus 129PT arginine transporter permease subunit ArtM YP_718462.1 251878 D 205914 CDS YP_718463.1 113460401 4239771 complement(252667..252954) 1 NC_008309.1 hypothetical protein 252954 4239771 HS_0255 Haemophilus somnus 129PT hypothetical protein YP_718463.1 252667 R 205914 CDS YP_718464.1 113460402 4239772 253414..254979 1 NC_008309.1 cytochrome D ubiquinol oxidase subunit I 254979 cydA 4239772 cydA Haemophilus somnus 129PT cytochrome D ubiquinol oxidase subunit I YP_718464.1 253414 D 205914 CDS YP_718465.1 113460403 4239773 254994..256130 1 NC_008309.1 cytochrome D ubiquinol oxidase subunit II 256130 cydB 4239773 cydB Haemophilus somnus 129PT cytochrome D ubiquinol oxidase subunit II YP_718465.1 254994 D 205914 CDS YP_718466.1 113460404 4239774 256504..256929 1 NC_008309.1 thioesterase 256929 4239774 HS_0258 Haemophilus somnus 129PT thioesterase YP_718466.1 256504 D 205914 CDS YP_718467.1 113460405 4239775 256926..257609 1 NC_008309.1 biopolymer transport protein 257609 tolQ 4239775 tolQ Haemophilus somnus 129PT biopolymer transport protein YP_718467.1 256926 D 205914 CDS YP_718468.1 113460406 4239776 257677..258099 1 NC_008309.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR 258099 tolR 4239776 tolR Haemophilus somnus 129PT colicin uptake protein TolR YP_718468.1 257677 D 205914 CDS YP_718469.1 113460407 4239459 258118..259173 1 NC_008309.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA 259173 tolA 4239459 tolA Haemophilus somnus 129PT cell envelope integrity inner membrane protein TolA YP_718469.1 258118 D 205914 CDS YP_718470.1 113460408 4239460 259201..260505 1 NC_008309.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 260505 tolB 4239460 tolB Haemophilus somnus 129PT translocation protein TolB YP_718470.1 259201 D 205914 CDS YP_718471.1 113460409 4239461 260563..260970 1 NC_008309.1 peptidoglycan-associated outer membrane lipoprotein (outer membrane protein P6) 260970 pal 4239461 pal Haemophilus somnus 129PT peptidoglycan-associated outer membrane lipoprotein (outer membrane protein P6) YP_718471.1 260563 D 205914 CDS YP_718472.1 113460410 4239465 261644..262171 1 NC_008309.1 type II secretory pathway, pseudopilin 262171 pulG 4239465 pulG Haemophilus somnus 129PT type II secretory pathway, pseudopilin YP_718472.1 261644 D 205914 CDS YP_718473.1 113460411 4239466 262220..262897 1 NC_008309.1 hypothetical protein 262897 4239466 HS_0265 Haemophilus somnus 129PT hypothetical protein YP_718473.1 262220 D 205914 CDS YP_718474.1 113460412 4239467 262900..263580 1 NC_008309.1 hypothetical protein 263580 4239467 HS_0266 Haemophilus somnus 129PT hypothetical protein YP_718474.1 262900 D 205914 CDS YP_718475.1 113460413 4239468 263561..263878 1 NC_008309.1 hypothetical protein 263878 4239468 HS_0267 Haemophilus somnus 129PT hypothetical protein YP_718475.1 263561 D 205914 CDS YP_718476.1 113460414 4239469 263931..267365 1 NC_008309.1 DNA helicase/exodeoxyribonuclease V subunit gamma 267365 recC 4239469 recC Haemophilus somnus 129PT DNA helicase/exodeoxyribonuclease V subunit gamma YP_718476.1 263931 D 205914 CDS YP_718477.1 113460415 4239470 267444..268058 1 NC_008309.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 268058 ruvA 4239470 ruvA Haemophilus somnus 129PT Holliday junction DNA helicase RuvA YP_718477.1 267444 D 205914 CDS YP_718478.1 113460416 4239471 268069..269076 1 NC_008309.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 269076 ruvB 4239471 ruvB Haemophilus somnus 129PT Holliday junction DNA helicase RuvB YP_718478.1 268069 D 205914 CDS YP_718479.1 113460417 4239472 complement(269211..270416) 1 NC_008309.1 hypothetical protein 270416 4239472 HS_0271 Haemophilus somnus 129PT hypothetical protein YP_718479.1 269211 R 205914 CDS YP_718480.1 113460418 4239473 complement(270419..271384) 1 NC_008309.1 S-adenosylmethionine-dependent methyltransferase 271384 4239473 HS_0272 Haemophilus somnus 129PT S-adenosylmethionine-dependent methyltransferase YP_718480.1 270419 R 205914 CDS YP_718481.1 113460419 4239474 complement(271387..272901) 1 NC_008309.1 sodium/proline symporter 272901 putP 4239474 putP Haemophilus somnus 129PT sodium/proline symporter YP_718481.1 271387 R 205914 CDS YP_718482.1 113460420 4239475 273032..274507 1 NC_008309.1 involved in the processing of the 5'end of 16S rRNA; ribonuclease G 274507 rng 4239475 rng Haemophilus somnus 129PT ribonuclease G YP_718482.1 273032 D 205914 CDS YP_718483.1 113460421 4239476 274562..275341 1 NC_008309.1 glycosyltransferase 275341 4239476 HS_0275 Haemophilus somnus 129PT glycosyltransferase YP_718483.1 274562 D 205914 CDS YP_718484.1 113460422 4239477 275479..276927 1 NC_008309.1 microcin-processing peptidase 2 276927 tldD 4239477 tldD Haemophilus somnus 129PT microcin-processing peptidase 2 YP_718484.1 275479 D 205914 CDS YP_718485.1 113460423 4239478 277139..278587 1 NC_008309.1 SAM-dependent methyltransferase 278587 4239478 HS_0277 Haemophilus somnus 129PT SAM-dependent methyltransferase YP_718485.1 277139 D 205914 CDS YP_718486.1 113460424 4239479 complement(278668..279474) 1 NC_008309.1 inositol-1(or 4)-monophosphatase 279474 suhB 4239479 suhB Haemophilus somnus 129PT inositol-1(or 4)-monophosphatase YP_718486.1 278668 R 205914 CDS YP_718487.1 113460425 4239480 279646..280386 1 NC_008309.1 tRNA/rRNA methyltransferase 280386 4239480 HS_0279 Haemophilus somnus 129PT tRNA/rRNA methyltransferase YP_718487.1 279646 D 205914 CDS YP_718488.1 113460426 4239481 280440..280847 1 NC_008309.1 BadM/Rrf2 family transcriptional regulator 280847 4239481 HS_0280 Haemophilus somnus 129PT BadM/Rrf2 family transcriptional regulator YP_718488.1 280440 D 205914 CDS YP_718489.1 113460427 4239483 280926..282140 1 NC_008309.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 282140 nifS 4239483 nifS Haemophilus somnus 129PT cysteine desulfurase YP_718489.1 280926 D 205914 CDS YP_718490.1 113460428 4239484 282216..282599 1 NC_008309.1 scaffold protein 282599 iscU 4239484 iscU Haemophilus somnus 129PT scaffold protein YP_718490.1 282216 D 205914 CDS YP_718491.1 113460429 4239485 282765..283088 1 NC_008309.1 HesB-family protein 283088 4239485 HS_0283 Haemophilus somnus 129PT HesB-family protein YP_718491.1 282765 D 205914 CDS YP_718492.1 113460430 4239486 283097..283615 1 NC_008309.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 283615 hscB 4239486 hscB Haemophilus somnus 129PT co-chaperone HscB YP_718492.1 283097 D 205914 CDS YP_718493.1 113460431 4239487 283657..285507 1 NC_008309.1 involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 285507 hscA 4239487 hscA Haemophilus somnus 129PT chaperone protein HscA YP_718493.1 283657 D 205914 CDS YP_718494.1 113460432 4239488 285519..285860 1 NC_008309.1 ferredoxin 285860 fdx 4239488 fdx Haemophilus somnus 129PT ferredoxin YP_718494.1 285519 D 205914 CDS YP_718495.1 113460433 4239489 285995..288268 1 NC_008309.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 288268 gshA 4239489 gshA Haemophilus somnus 129PT bifunctional glutamate--cysteine ligase/glutathione synthetase YP_718495.1 285995 D 205914 CDS YP_718496.1 113460434 4239490 complement(288437..289153) 1 NC_008309.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 289153 deoD 4239490 deoD Haemophilus somnus 129PT purine nucleoside phosphorylase YP_718496.1 288437 R 205914 CDS YP_718497.1 113460435 4239491 complement(289282..290541) 1 NC_008309.1 transport system permease 290541 4239491 HS_0289 Haemophilus somnus 129PT transport system permease YP_718497.1 289282 R 205914 CDS YP_718498.1 113460436 4239492 290717..291352 1 NC_008309.1 hypothetical protein 291352 4239492 HS_0290 Haemophilus somnus 129PT hypothetical protein YP_718498.1 290717 D 205914 CDS YP_718499.1 113460437 4239493 291438..292208 1 NC_008309.1 UDP-glucose--lipooligosaccharide beta 1-4 glucosyltransferase 292208 lgtF 4239493 lgtF Haemophilus somnus 129PT UDP-glucose--lipooligosaccharide beta 1-4 glucosyltransferase YP_718499.1 291438 D 205914 CDS YP_718500.1 113460438 4239494 292198..293244 1 NC_008309.1 glycosyltransferase 293244 4239494 HS_0292 Haemophilus somnus 129PT glycosyltransferase YP_718500.1 292198 D 205914 CDS YP_718501.1 113460439 4239495 293372..293620 1 NC_008309.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 293620 rpsP 4239495 rpsP Haemophilus somnus 129PT 30S ribosomal protein S16 YP_718501.1 293372 D 205914 CDS YP_718502.1 113460440 4239496 293647..294174 1 NC_008309.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 294174 rimM 4239496 rimM Haemophilus somnus 129PT 16S rRNA-processing protein RimM YP_718502.1 293647 D 205914 CDS YP_718503.1 113460441 4239497 294228..294965 1 NC_008309.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 294965 trmD 4239497 trmD Haemophilus somnus 129PT tRNA (guanine-N(1)-)-methyltransferase YP_718503.1 294228 D 205914 CDS YP_718504.1 113460442 4239498 295001..295351 1 NC_008309.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 295351 rplS 4239498 rplS Haemophilus somnus 129PT 50S ribosomal protein L19 YP_718504.1 295001 D 205914 CDS YP_718505.1 113460443 4239499 complement(295486..296304) 1 NC_008309.1 hydrolase 296304 4239499 HS_0297 Haemophilus somnus 129PT hydrolase YP_718505.1 295486 R 205914 CDS YP_718506.1 113460444 4239500 complement(296341..297342) 1 NC_008309.1 gluconate utilization operon repressor 297342 gntR 4239500 gntR Haemophilus somnus 129PT gluconate utilization operon repressor YP_718506.1 296341 R 205914 CDS YP_718507.1 113460445 4239501 complement(297351..298445) 1 NC_008309.1 tRNA/rRNA methyltransferase 298445 4239501 HS_0299 Haemophilus somnus 129PT tRNA/rRNA methyltransferase YP_718507.1 297351 R 205914 CDS YP_718508.1 113460446 4239502 298569..299936 1 NC_008309.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase 299936 pssA 4239502 pssA Haemophilus somnus 129PT phosphatidylserine synthase YP_718508.1 298569 D 205914 CDS YP_718509.1 113460447 4239503 complement(299966..300676) 1 NC_008309.1 DNA polymerase III, epsilon subunit 300676 dnaQ 4239503 dnaQ Haemophilus somnus 129PT DNA polymerase III, epsilon subunit YP_718509.1 299966 R 205914 CDS YP_718510.1 113460448 4239504 complement(300673..302619) 1 NC_008309.1 signal-transduction protein 302619 4239504 HS_0302 Haemophilus somnus 129PT signal-transduction protein YP_718510.1 300673 R 205914 CDS YP_718511.1 113460449 4239505 complement(302655..304565) 1 NC_008309.1 myo-inositol catabolism protein 304565 iolC 4239505 iolC Haemophilus somnus 129PT myo-inositol catabolism protein YP_718511.1 302655 R 205914 CDS YP_718512.1 113460450 4239777 304808..305650 1 NC_008309.1 transcriptional regulator 305650 4239777 HS_0304 Haemophilus somnus 129PT transcriptional regulator YP_718512.1 304808 D 205914 CDS YP_718513.1 113460451 4239778 complement(305687..306451) 1 NC_008309.1 SAM-dependent methyltransferase 306451 4239778 HS_0305 Haemophilus somnus 129PT SAM-dependent methyltransferase YP_718513.1 305687 R 205914 CDS YP_718514.1 113460452 4239779 complement(306427..307626) 1 NC_008309.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 307626 trmA 4239779 trmA Haemophilus somnus 129PT tRNA (uracil-5-)-methyltransferase YP_718514.1 306427 R 205914 CDS YP_718515.1 113460453 4239780 complement(307592..307921) 1 NC_008309.1 hypothetical protein 307921 4239780 HS_0307 Haemophilus somnus 129PT hypothetical protein YP_718515.1 307592 R 205914 CDS YP_718516.1 113460454 4239781 complement(307975..308583) 1 NC_008309.1 protein disulfide-isomerase 308583 dsbA 4239781 dsbA Haemophilus somnus 129PT protein disulfide-isomerase YP_718516.1 307975 R 205914 CDS YP_718517.1 113460455 4239782 complement(308593..308859) 1 NC_008309.1 hypothetical protein 308859 4239782 HS_0309 Haemophilus somnus 129PT hypothetical protein YP_718517.1 308593 R 205914 CDS YP_718518.1 113460456 4239783 308926..309513 1 NC_008309.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 309513 mobA 4239783 mobA Haemophilus somnus 129PT molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_718518.1 308926 D 205914 CDS YP_718519.1 113460457 4239784 309632..311638 1 NC_008309.1 possible oligopeptide transporter; integral membrane protein 311638 4239784 HS_0311 Haemophilus somnus 129PT integral membrane protein YP_718519.1 309632 D 205914 CDS YP_718520.1 113460458 4239785 complement(311761..312432) 1 NC_008309.1 TPR repeat-containing protein 312432 4239785 HS_0312 Haemophilus somnus 129PT TPR repeat-containing protein YP_718520.1 311761 R 205914 CDS YP_718521.1 113460459 4239786 complement(312490..313248) 1 NC_008309.1 TPR repeat-containing protein 313248 4239786 HS_0313 Haemophilus somnus 129PT TPR repeat-containing protein YP_718521.1 312490 R 205914 CDS YP_718522.1 113460460 4239787 complement(313269..313532) 1 NC_008309.1 hypothetical protein 313532 4239787 HS_0314 Haemophilus somnus 129PT hypothetical protein YP_718522.1 313269 R 205914 CDS YP_718523.1 113460461 4239788 complement(313770..314714) 1 NC_008309.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 314714 lipA 4239788 lipA Haemophilus somnus 129PT lipoyl synthase YP_718523.1 313770 R 205914 CDS YP_718524.1 113460462 4239789 complement(314750..315406) 1 NC_008309.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 315406 lipB 4239789 lipB Haemophilus somnus 129PT lipoate-protein ligase B YP_718524.1 314750 R 205914 CDS YP_718525.1 113460463 4239790 complement(315415..315711) 1 NC_008309.1 hypothetical protein 315711 4239790 HS_0317 Haemophilus somnus 129PT hypothetical protein YP_718525.1 315415 R 205914 CDS YP_718526.1 113460464 4239791 complement(315766..316932) 1 NC_008309.1 serine-type D-Ala-D-Ala carboxypeptidase; penicillin-binding protein 316932 dacA 4239791 dacA Haemophilus somnus 129PT penicillin-binding protein YP_718526.1 315766 R 205914 CDS YP_718527.1 113460465 4239792 complement(317042..317602) 1 NC_008309.1 rare lipoprotein A 317602 rlpA 4239792 rlpA Haemophilus somnus 129PT rare lipoprotein A YP_718527.1 317042 R 205914 CDS YP_718528.1 113460466 4239793 complement(317645..318760) 1 NC_008309.1 rod shape-determining protein 318760 mrdB 4239793 mrdB Haemophilus somnus 129PT rod shape-determining protein YP_718528.1 317645 R 205914 CDS YP_718529.1 113460467 4239794 complement(318760..320673) 1 NC_008309.1 peptidoglycan glycosyltransferase 320673 mrdA 4239794 mrdA Haemophilus somnus 129PT peptidoglycan glycosyltransferase YP_718529.1 318760 R 205914 CDS YP_718530.1 113460468 4239795 complement(320690..321157) 1 NC_008309.1 SPOUT methyltransferase; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 321157 4239795 HS_0322 Haemophilus somnus 129PT rRNA large subunit methyltransferase YP_718530.1 320690 R 205914 CDS YP_718531.1 113460469 4239796 complement(321161..321481) 1 NC_008309.1 hypothetical protein 321481 4239796 HS_0323 Haemophilus somnus 129PT hypothetical protein YP_718531.1 321161 R 205914 CDS YP_718532.1 113460470 4239797 complement(321635..322288) 1 NC_008309.1 IS1016C2 transposase 322288 4239797 HS_0324 Haemophilus somnus 129PT IS1016C2 transposase YP_718532.1 321635 R 205914 CDS YP_718533.1 113460471 4239798 complement(322555..323397) 1 NC_008309.1 chelated iron ABC transporter permease 323397 yfeD 4239798 yfeD Haemophilus somnus 129PT chelated iron ABC transporter permease YP_718533.1 322555 R 205914 CDS YP_718534.1 113460472 4239799 complement(323390..324280) 1 NC_008309.1 chelated iron ABC transporter permease 324280 yfeC 4239799 yfeC Haemophilus somnus 129PT chelated iron ABC transporter permease YP_718534.1 323390 R 205914 CDS YP_718535.1 113460473 4239800 complement(324285..325043) 1 NC_008309.1 iron ABC transporter ATP-binding protein 325043 yfeB 4239800 yfeB Haemophilus somnus 129PT iron ABC transporter ATP-binding protein YP_718535.1 324285 R 205914 CDS YP_718536.1 113460474 4239801 complement(325053..325913) 1 NC_008309.1 chelated iron ABC transporter periplasmic-binding protein 325913 yfeA 4239801 yfeA Haemophilus somnus 129PT chelated iron ABC transporter periplasmic-binding protein YP_718536.1 325053 R 205914 CDS YP_718537.1 113460475 4239802 complement(326040..326369) 1 NC_008309.1 sulfite reductase-like protein 326369 4239802 HS_0329 Haemophilus somnus 129PT sulfite reductase-like protein YP_718537.1 326040 R 205914 CDS YP_718538.1 113460476 4239803 complement(326447..327109) 1 NC_008309.1 integral membrane protein 327109 4239803 HS_0330 Haemophilus somnus 129PT integral membrane protein YP_718538.1 326447 R 205914 CDS YP_718539.1 113460477 4239805 complement(327531..329060) 1 NC_008309.1 competence-like protein 329060 comM 4239805 comM Haemophilus somnus 129PT competence-like protein YP_718539.1 327531 R 205914 CDS YP_718540.1 113460478 4239806 complement(329162..329857) 1 NC_008309.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 329857 engB 4239806 engB Haemophilus somnus 129PT ribosome biogenesis GTP-binding protein YsxC YP_718540.1 329162 R 205914 CDS YP_718541.1 113460479 4239807 complement(329778..331139) 1 NC_008309.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 331139 glmU 4239807 glmU Haemophilus somnus 129PT bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_718541.1 329778 R 205914 CDS YP_718542.1 113460480 4239808 331242..332363 1 NC_008309.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 332363 anmK 4239808 anmK Haemophilus somnus 129PT anhydro-N-acetylmuramic acid kinase YP_718542.1 331242 D 205914 CDS YP_718543.1 113460481 4239809 332366..333277 1 NC_008309.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase 333277 murQ 4239809 murQ Haemophilus somnus 129PT N-acetylmuramic acid-6-phosphate etherase YP_718543.1 332366 D 205914 CDS YP_718544.1 113460482 4239810 333498..334103 1 NC_008309.1 NAD(P)H dehydrogenase (quinone) 334103 kefF 4239810 kefF Haemophilus somnus 129PT NAD(P)H dehydrogenase (quinone) YP_718544.1 333498 D 205914 CDS YP_718545.1 113460483 4239811 334320..335087 1 NC_008309.1 hypothetical protein 335087 4239811 HS_0337 Haemophilus somnus 129PT hypothetical protein YP_718545.1 334320 D 205914 CDS YP_718546.1 113460484 4239812 complement(335169..336857) 1 NC_008309.1 uncharacterized member of the SSS superfamily of sodium-dependent solute transporters; unknown function; symporter YidK 336857 4239812 HS_0338 Haemophilus somnus 129PT symporter YidK YP_718546.1 335169 R 205914 CDS YP_718547.1 113460485 4239813 337178..338944 1 NC_008309.1 outer membrane protein 338944 4239813 HS_0339 Haemophilus somnus 129PT outer membrane protein YP_718547.1 337178 D 205914 CDS YP_718548.1 113460486 4239814 338955..342479 1 NC_008309.1 hypothetical protein 342479 4239814 HS_0340 Haemophilus somnus 129PT hypothetical protein YP_718548.1 338955 D 205914 CDS YP_718549.1 113460487 4239815 342482..344032 1 NC_008309.1 exopolyphosphatase 344032 ppx 4239815 ppx Haemophilus somnus 129PT exopolyphosphatase YP_718549.1 342482 D 205914 CDS YP_718550.1 113460488 4239816 344205..346040 1 NC_008309.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 346040 ilvD 4239816 ilvD Haemophilus somnus 129PT dihydroxy-acid dehydratase YP_718550.1 344205 D 205914 CDS YP_718551.1 113461935 4239817 complement(346369..346554) 1 NC_008309.1 hypothetical protein 346554 4239817 HS_0342a Haemophilus somnus 129PT hypothetical protein YP_718551.1 346369 R 205914 CDS YP_718552.1 113460489 4239818 347041..348198 1 NC_008309.1 calcium/proton antiporter 348198 chaA 4239818 chaA Haemophilus somnus 129PT calcium/proton antiporter YP_718552.1 347041 D 205914 CDS YP_718553.1 113460490 4239819 348297..349274 1 NC_008309.1 hypothetical protein 349274 4239819 HS_0344 Haemophilus somnus 129PT hypothetical protein YP_718553.1 348297 D 205914 CDS YP_718554.1 113460491 4239820 349291..350403 1 NC_008309.1 PhoH-like ATP-binding protein 350403 4239820 HS_0345 Haemophilus somnus 129PT PhoH-like ATP-binding protein YP_718554.1 349291 D 205914 CDS YP_718555.1 113460492 4239821 350425..350889 1 NC_008309.1 metal-dependent hydrolase 350889 4239821 HS_0346 Haemophilus somnus 129PT metal-dependent hydrolase YP_718555.1 350425 D 205914 CDS YP_718556.1 113460493 4239822 350879..352831 1 NC_008309.1 acetyltransferase 352831 4239822 HS_0347 Haemophilus somnus 129PT acetyltransferase YP_718556.1 350879 D 205914 CDS YP_718557.1 113461936 4239823 352864..353037 1 NC_008309.1 hypothetical protein 353037 4239823 HS_0347a Haemophilus somnus 129PT hypothetical protein YP_718557.1 352864 D 205914 CDS YP_718558.1 113460494 4239824 353182..354765 1 NC_008309.1 carbon starvation protein A 354765 cstA 4239824 cstA Haemophilus somnus 129PT carbon starvation protein A YP_718558.1 353182 D 205914 CDS YP_718559.1 113460495 4239825 354994..355452 1 NC_008309.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 355452 mraZ 4239825 mraZ Haemophilus somnus 129PT cell division protein MraZ YP_718559.1 354994 D 205914 CDS YP_718560.1 113460496 4239826 355570..356529 1 NC_008309.1 S-adenosyl-methyltransferase MraW 356529 mraW 4239826 mraW Haemophilus somnus 129PT S-adenosyl-methyltransferase MraW YP_718560.1 355570 D 205914 CDS YP_718561.1 113460497 4239827 356529..356849 1 NC_008309.1 cell division protein 356849 ftsL 4239827 ftsL Haemophilus somnus 129PT cell division protein YP_718561.1 356529 D 205914 CDS YP_718562.1 113460498 4239828 356874..358673 1 NC_008309.1 peptidoglycan synthetase FtsI 358673 ftsI 4239828 ftsI Haemophilus somnus 129PT peptidoglycan synthetase FtsI YP_718562.1 356874 D 205914 CDS YP_718563.1 113460499 4239829 358689..360176 1 NC_008309.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 360176 murE 4239829 murE Haemophilus somnus 129PT UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_718563.1 358689 D 205914 CDS YP_718564.1 113460500 4239830 360257..361651 1 NC_008309.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 361651 murF 4239830 murF Haemophilus somnus 129PT UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_718564.1 360257 D 205914 CDS YP_718565.1 113460501 4239831 361645..362730 1 NC_008309.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 362730 mraY 4239831 mraY Haemophilus somnus 129PT phospho-N-acetylmuramoyl-pentapeptide- transferase YP_718565.1 361645 D 205914 CDS YP_718566.1 113460502 4239832 362739..364049 1 NC_008309.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 364049 murD 4239832 murD Haemophilus somnus 129PT UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_718566.1 362739 D 205914 CDS YP_718567.1 113460503 4239833 364063..365247 1 NC_008309.1 cell division protein 365247 ftsW 4239833 ftsW Haemophilus somnus 129PT cell division protein YP_718567.1 364063 D 205914 CDS YP_718568.1 113460504 4239834 365263..366336 1 NC_008309.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 366336 murG 4239834 murG Haemophilus somnus 129PT UDPdiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_718568.1 365263 D 205914 CDS YP_718569.1 113460505 4239835 366390..367820 1 NC_008309.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 367820 murC 4239835 murC Haemophilus somnus 129PT UDP-N-acetylmuramate--L-alanine ligase YP_718569.1 366390 D 205914 CDS YP_718570.1 113460506 4239836 367865..368791 1 NC_008309.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 368791 ddl 4239836 ddl Haemophilus somnus 129PT D-alanine--D-alanine ligase YP_718570.1 367865 D 205914 CDS YP_718571.1 113460507 4239837 368792..369565 1 NC_008309.1 cell division protein 369565 ftsQ 4239837 ftsQ Haemophilus somnus 129PT cell division protein YP_718571.1 368792 D 205914 CDS YP_718572.1 113460508 4239838 369596..370870 1 NC_008309.1 cell division protein FtsA 370870 fstA 4239838 fstA Haemophilus somnus 129PT cell division protein FtsA YP_718572.1 369596 D 205914 CDS YP_718573.1 113460509 4239839 371056..372171 1 NC_008309.1 hydrolyzes GTP; cell division protein FtsZ 372171 ftsZ 4239839 ftsZ Haemophilus somnus 129PT cell division protein FtsZ YP_718573.1 371056 D 205914 CDS YP_718574.1 113460510 4239840 372212..373129 1 NC_008309.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 373129 lpxC 4239840 lpxC Haemophilus somnus 129PT UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_718574.1 372212 D 205914 CDS YP_718575.1 113460511 4239841 373254..374411 1 NC_008309.1 chorismate mutase / prephenate dehydratase 374411 pheA 4239841 pheA Haemophilus somnus 129PT chorismate mutase / prephenate dehydratase YP_718575.1 373254 D 205914 CDS YP_718576.1 113460512 4239842 complement(374473..375261) 1 NC_008309.1 DNA uptake lipoprotein 375261 comL 4239842 comL Haemophilus somnus 129PT DNA uptake lipoprotein YP_718576.1 374473 R 205914 CDS YP_718577.1 113460513 4239843 375371..376336 1 NC_008309.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 376336 rluD 4239843 rluD Haemophilus somnus 129PT 23S rRNA pseudouridine synthase D YP_718577.1 375371 D 205914 CDS YP_718578.1 113460514 4239844 376338..377078 1 NC_008309.1 hypothetical protein 377078 4239844 HS_0368 Haemophilus somnus 129PT hypothetical protein YP_718578.1 376338 D 205914 CDS YP_718579.1 113460515 4239845 complement(377132..378082) 1 NC_008309.1 cysteine synthase 378082 cysK 4239845 cysK Haemophilus somnus 129PT cysteine synthase YP_718579.1 377132 R 205914 CDS YP_718580.1 113460516 4239846 complement(378200..378973) 1 NC_008309.1 role in sulfur assimilation; sulfate transport protein CysZ 378973 cysZ 4239846 cysZ Haemophilus somnus 129PT sulfate transport protein CysZ YP_718580.1 378200 R 205914 CDS YP_718581.1 113460517 4239847 379133..380140 1 NC_008309.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA 380140 zipA 4239847 zipA Haemophilus somnus 129PT cell division protein ZipA YP_718581.1 379133 D 205914 CDS YP_718582.1 113460518 4239848 380653..382323 1 NC_008309.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 382323 4239848 HS_0372 Haemophilus somnus 129PT ABC transporter ATP-binding protein YP_718582.1 380653 D 205914 CDS YP_718583.1 113460519 4239849 382622..382969 1 NC_008309.1 hypothetical protein 382969 4239849 HS_0373 Haemophilus somnus 129PT hypothetical protein YP_718583.1 382622 D 205914 CDS YP_718584.1 113460520 4239850 383108..383317 1 NC_008309.1 hypothetical protein 383317 4239850 HS_0374 Haemophilus somnus 129PT hypothetical protein YP_718584.1 383108 D 205914 CDS YP_718585.1 113460521 4239851 383505..384167 1 NC_008309.1 potassium uptake protein; K+ transporter 384167 ktrA 4239851 ktrA Haemophilus somnus 129PT K+ transporter YP_718585.1 383505 D 205914 CDS YP_718586.1 113460522 4239852 384157..385476 1 NC_008309.1 potassium uptake protein; cation transport protein 385476 ktrB 4239852 ktrB Haemophilus somnus 129PT cation transport protein YP_718586.1 384157 D 205914 CDS YP_718587.1 113460523 4239853 complement(385592..387613) 1 NC_008309.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 387613 ligA 4239853 ligA Haemophilus somnus 129PT NAD-dependent DNA ligase LigA YP_718587.1 385592 R 205914 CDS YP_718588.1 113460524 4239854 complement(387723..389057) 1 NC_008309.1 gluconate permease 389057 gntP 4239854 gntP Haemophilus somnus 129PT gluconate permease YP_718588.1 387723 R 205914 CDS YP_718589.1 113460525 4239855 389391..389909 1 NC_008309.1 gluconate kinase 389909 glk 4239855 glk Haemophilus somnus 129PT gluconate kinase YP_718589.1 389391 D 205914 CDS YP_718590.1 113460526 4239856 390391..391419 1 NC_008309.1 periplasmic-binding protein 391419 4239856 HS_0380 Haemophilus somnus 129PT periplasmic-binding protein YP_718590.1 390391 D 205914 CDS YP_718591.1 113460527 4239857 391450..391914 1 NC_008309.1 hypothetical protein 391914 4239857 HS_0381 Haemophilus somnus 129PT hypothetical protein YP_718591.1 391450 D 205914 CDS YP_718592.1 113460528 4239858 391907..393883 1 NC_008309.1 integral membrane protein 393883 4239858 HS_0382 Haemophilus somnus 129PT integral membrane protein YP_718592.1 391907 D 205914 CDS YP_718593.1 113460529 4239859 complement(394115..406831) 1 NC_008309.1 large adhesin 406831 4239859 HS_0383 Haemophilus somnus 129PT large adhesin YP_718593.1 394115 R 205914 CDS YP_718594.1 113460530 4239860 407469..409049 1 NC_008309.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 409049 prfC 4239860 prfC Haemophilus somnus 129PT peptide chain release factor 3 YP_718594.1 407469 D 205914 CDS YP_718595.1 113460531 4239861 complement(409166..411601) 1 NC_008309.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 411601 plsB 4239861 plsB Haemophilus somnus 129PT glycerol-3-phosphate acyltransferase YP_718595.1 409166 R 205914 CDS YP_718596.1 113460532 4239862 411763..412395 1 NC_008309.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 412395 lexA 4239862 lexA Haemophilus somnus 129PT LexA repressor YP_718596.1 411763 D 205914 CDS YP_718597.1 113460533 4239863 complement(412482..412907) 1 NC_008309.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 412907 ndk 4239863 ndk Haemophilus somnus 129PT nucleoside diphosphate kinase YP_718597.1 412482 R 205914 CDS YP_718598.1 113460534 4239864 complement(412919..414217) 1 NC_008309.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 414217 pepB 4239864 pepB Haemophilus somnus 129PT aminopeptidase B YP_718598.1 412919 R 205914 CDS YP_718599.1 113460535 4239865 complement(414327..414929) 1 NC_008309.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 414929 leuD 4239865 leuD Haemophilus somnus 129PT isopropylmalate isomerase small subunit YP_718599.1 414327 R 205914 CDS YP_718600.1 113460536 4239866 complement(414939..416348) 1 NC_008309.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 416348 leuC 4239866 leuC Haemophilus somnus 129PT isopropylmalate isomerase large subunit YP_718600.1 414939 R 205914 CDS YP_718601.1 113460537 4239867 complement(416449..417525) 1 NC_008309.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 417525 leuB 4239867 leuB Haemophilus somnus 129PT 3-isopropylmalate dehydrogenase YP_718601.1 416449 R 205914 CDS YP_718602.1 113460538 4239868 complement(417549..419102) 1 NC_008309.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 419102 leuA 4239868 leuA Haemophilus somnus 129PT 2-isopropylmalate synthase YP_718602.1 417549 R 205914 CDS YP_718603.1 113460539 4239869 419699..420352 1 NC_008309.1 ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 420352 ccmA 4239869 ccmA Haemophilus somnus 129PT cytochrome c biogenesis protein CcmA YP_718603.1 419699 D 205914 CDS YP_718604.1 113460540 4239870 420349..421014 1 NC_008309.1 heme ABC transporter permease 421014 ccmB 4239870 ccmB Haemophilus somnus 129PT heme ABC transporter permease YP_718604.1 420349 D 205914 CDS YP_718605.1 113460541 4239871 421064..421795 1 NC_008309.1 heme ABC transporter permease 421795 ccmC 4239871 ccmC Haemophilus somnus 129PT heme ABC transporter permease YP_718605.1 421064 D 205914 CDS YP_718606.1 113460542 4239872 421805..422017 1 NC_008309.1 heme ABC transporter substrate-binding protein 422017 ccmD 4239872 ccmD Haemophilus somnus 129PT heme ABC transporter substrate-binding protein YP_718606.1 421805 D 205914 CDS YP_718607.1 113460543 4239873 422014..422538 1 NC_008309.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 422538 ccmE 4239873 ccmE Haemophilus somnus 129PT cytochrome c-type biogenesis protein CcmE YP_718607.1 422014 D 205914 CDS YP_718608.1 113460544 4239874 422535..424484 1 NC_008309.1 cytochrome c-type biogenesis protein F 424484 ccmF 4239874 ccmF Haemophilus somnus 129PT cytochrome c-type biogenesis protein F YP_718608.1 422535 D 205914 CDS YP_718609.1 113460545 4239875 424488..425033 1 NC_008309.1 thiol:disulfide interchange protein; cytochrome c-type biogenesis protein G 425033 dsbE 4239875 dsbE Haemophilus somnus 129PT cytochrome c-type biogenesis protein G YP_718609.1 424488 D 205914 CDS YP_718610.1 113460546 4239876 425030..425500 1 NC_008309.1 cytochrome c-type biogenesis protein H 425500 ccmH 4239876 ccmH Haemophilus somnus 129PT cytochrome c-type biogenesis protein H YP_718610.1 425030 D 205914 CDS YP_718611.1 113460547 4239877 425504..426388 1 NC_008309.1 TPR repeat-containing cytochrome c-type biogenesis protein 426388 4239877 HS_0401 Haemophilus somnus 129PT TPR repeat-containing cytochrome c-type biogenesis protein YP_718611.1 425504 D 205914 CDS YP_718612.1 113460548 4239878 426401..428257 1 NC_008309.1 sensor histidine kinase 428257 arcB 4239878 arcB Haemophilus somnus 129PT sensor histidine kinase YP_718612.1 426401 D 205914 CDS YP_718613.1 113460549 4239879 428344..429300 1 NC_008309.1 hypothetical protein 429300 4239879 HS_0403 Haemophilus somnus 129PT hypothetical protein YP_718613.1 428344 D 205914 CDS YP_718614.1 113460550 4239880 429307..430413 1 NC_008309.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 430413 ispG 4239880 ispG Haemophilus somnus 129PT 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_718614.1 429307 D 205914 CDS YP_718615.1 113460551 4239881 430426..431703 1 NC_008309.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 431703 hisS 4239881 hisS Haemophilus somnus 129PT histidyl-tRNA synthetase YP_718615.1 430426 D 205914 CDS YP_718616.1 113460552 4239882 431714..432325 1 NC_008309.1 hypothetical protein 432325 4239882 HS_0406 Haemophilus somnus 129PT hypothetical protein YP_718616.1 431714 D 205914 CDS YP_718617.1 113460553 4239883 432401..433828 1 NC_008309.1 succinate semialdehyde dehydrogenase 433828 attK 4239883 attK Haemophilus somnus 129PT succinate semialdehyde dehydrogenase YP_718617.1 432401 D 205914 CDS YP_718618.1 113460554 4239884 complement(433984..435240) 1 NC_008309.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 435240 proA 4239884 proA Haemophilus somnus 129PT gamma-glutamyl phosphate reductase YP_718618.1 433984 R 205914 CDS YP_718619.1 113460555 4239885 complement(435250..435921) 1 NC_008309.1 hypothetical protein 435921 4239885 HS_0409 Haemophilus somnus 129PT hypothetical protein YP_718619.1 435250 R 205914 CDS YP_718620.1 113460556 4239886 complement(436082..436669) 1 NC_008309.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 436669 tdk 4239886 tdk Haemophilus somnus 129PT thymidine kinase YP_718620.1 436082 R 205914 CDS YP_718621.1 113460557 4239887 complement(436731..437759) 1 NC_008309.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 437759 gcp 4239887 gcp Haemophilus somnus 129PT DNA-binding/iron metalloprotein/AP endonuclease YP_718621.1 436731 R 205914 CDS YP_718622.1 113460558 4239888 437995..439101 1 NC_008309.1 DNA processing chain A 439101 dprA 4239888 dprA Haemophilus somnus 129PT DNA processing chain A YP_718622.1 437995 D 205914 CDS YP_718623.1 113460559 4239889 complement(439084..439686) 1 NC_008309.1 methylase 439686 4239889 HS_0413 Haemophilus somnus 129PT methylase YP_718623.1 439084 R 205914 CDS YP_718624.1 113460560 4239890 439750..441093 1 NC_008309.1 signal recognition particle-docking protein FtsY 441093 ftsY 4239890 ftsY Haemophilus somnus 129PT signal recognition particle-docking protein FtsY YP_718624.1 439750 D 205914 CDS YP_718625.1 113460561 4239891 complement(441256..442812) 1 NC_008309.1 virulence factor 442812 mviN 4239891 mviN Haemophilus somnus 129PT virulence factor YP_718625.1 441256 R 205914 CDS YP_718626.1 113460562 4239892 443105..443368 1 NC_008309.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 443368 rpsT 4239892 rpsT Haemophilus somnus 129PT 30S ribosomal protein S20 YP_718626.1 443105 D 205914 CDS YP_718627.1 113460563 4239893 complement(443430..445280) 1 NC_008309.1 elongation factor; GTP-binding protein 445280 typA 4239893 typA Haemophilus somnus 129PT GTP-binding protein YP_718627.1 443430 R 205914 CDS YP_718628.1 113460564 4239894 445523..446941 1 NC_008309.1 L-glutamine synthetase 446941 glnA 4239894 glnA Haemophilus somnus 129PT L-glutamine synthetase YP_718628.1 445523 D 205914 CDS YP_718629.1 113460565 4239895 complement(447166..448098) 1 NC_008309.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 448098 birA 4239895 birA Haemophilus somnus 129PT biotin--protein ligase YP_718629.1 447166 R 205914 CDS YP_718630.1 113460566 4239896 448262..449725 1 NC_008309.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 449725 guaB 4239896 guaB Haemophilus somnus 129PT inosine 5'-monophosphate dehydrogenase YP_718630.1 448262 D 205914 CDS YP_718631.1 113460567 4239897 449845..451416 1 NC_008309.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 451416 guaA 4239897 guaA Haemophilus somnus 129PT GMP synthase YP_718631.1 449845 D 205914 CDS YP_718632.1 113460568 4239898 complement(451591..452031) 1 NC_008309.1 transcriptional regulator 452031 4239898 HS_0422 Haemophilus somnus 129PT transcriptional regulator YP_718632.1 451591 R 205914 CDS YP_718633.1 113460569 4239899 452273..452509 1 NC_008309.1 hypothetical protein 452509 4239899 HS_0423 Haemophilus somnus 129PT hypothetical protein YP_718633.1 452273 D 205914 CDS YP_718634.1 113460570 4239900 452512..453636 1 NC_008309.1 phage integrase 453636 4239900 HS_0424 Haemophilus somnus 129PT phage integrase YP_718634.1 452512 D 205914 CDS YP_718635.1 113460571 4239901 453626..453988 1 NC_008309.1 hypothetical protein 453988 4239901 HS_0425 Haemophilus somnus 129PT hypothetical protein YP_718635.1 453626 D 205914 CDS YP_718636.1 113460572 4239902 454096..455007 1 NC_008309.1 phage DNA-polymerase or DNA-primase 455007 4239902 HS_0426 Haemophilus somnus 129PT phage DNA-polymerase or DNA-primase YP_718636.1 454096 D 205914 CDS YP_718637.1 113460573 4239903 454967..456397 1 NC_008309.1 virulence-associated protein E 456397 virE 4239903 virE Haemophilus somnus 129PT virulence-associated protein E YP_718637.1 454967 D 205914 CDS YP_718638.1 113460574 4239904 456719..457060 1 NC_008309.1 hypothetical protein 457060 4239904 HS_0428 Haemophilus somnus 129PT hypothetical protein YP_718638.1 456719 D 205914 CDS YP_718639.1 113460575 4239905 457204..457629 1 NC_008309.1 hypothetical protein 457629 4239905 HS_0429 Haemophilus somnus 129PT hypothetical protein YP_718639.1 457204 D 205914 CDS YP_718640.1 113460576 4239906 457622..459592 1 NC_008309.1 bifunctional; restriction enzyme subunit alpha 459592 bcgIA 4239906 bcgIA Haemophilus somnus 129PT restriction enzyme subunit alpha YP_718640.1 457622 D 205914 CDS YP_718641.1 113460577 4239907 459573..460649 1 NC_008309.1 restriction enzyme subunit beta 460649 bcgIB 4239907 bcgIB Haemophilus somnus 129PT restriction enzyme subunit beta YP_718641.1 459573 D 205914 CDS YP_718642.1 113460578 4239908 460618..461151 1 NC_008309.1 restriction enzyme subunit beta 461151 bcgIB 4239908 bcgIB Haemophilus somnus 129PT restriction enzyme subunit beta YP_718642.1 460618 D 205914 CDS YP_718643.1 113460579 4239909 461158..462090 1 NC_008309.1 hypothetical protein 462090 4239909 HS_0433 Haemophilus somnus 129PT hypothetical protein YP_718643.1 461158 D 205914 CDS YP_718644.1 113460580 4239911 463494..464132 1 NC_008309.1 alpha-L-fucosidase 464132 alfA 4239911 alfA Haemophilus somnus 129PT alpha-L-fucosidase YP_718644.1 463494 D 205914 CDS YP_718645.1 113460581 4239912 464154..464462 1 NC_008309.1 Haemophilus-specific protein; hypothetical protein 464462 4239912 HS_0436 Haemophilus somnus 129PT hypothetical protein YP_718645.1 464154 D 205914 CDS YP_718646.1 113460582 4239913 464465..465805 1 NC_008309.1 protein-N(pi)-phosphohistidine-sugar phosphotransferase; PTS system, cellobiose-specific IIC component 465805 4239913 HS_0437 Haemophilus somnus 129PT PTS system, cellobiose-specific IIC component YP_718646.1 464465 D 205914 CDS YP_718647.1 113460583 4239914 465880..466239 1 NC_008309.1 ribosomal small subunit pseudouridine synthase A 466239 rusA 4239914 rusA Haemophilus somnus 129PT ribosomal small subunit pseudouridine synthase A YP_718647.1 465880 D 205914 CDS YP_718648.1 113460584 4239915 466559..466792 1 NC_008309.1 hypothetical protein 466792 4239915 HS_0439 Haemophilus somnus 129PT hypothetical protein YP_718648.1 466559 D 205914 CDS YP_718649.1 113460585 4239916 466802..467053 1 NC_008309.1 hypothetical protein 467053 4239916 HS_0440 Haemophilus somnus 129PT hypothetical protein YP_718649.1 466802 D 205914 CDS YP_718650.1 113460586 4239917 467055..468053 1 NC_008309.1 cell filamentation-like protein 468053 4239917 HS_0441 Haemophilus somnus 129PT cell filamentation-like protein YP_718650.1 467055 D 205914 CDS YP_718651.1 113460587 4239918 complement(468080..468301) 1 NC_008309.1 resolvase/integrase-like protein 468301 4239918 HS_0442 Haemophilus somnus 129PT resolvase/integrase-like protein YP_718651.1 468080 R 205914 CDS YP_718652.1 113460588 4239919 468440..469108 1 NC_008309.1 ParA-like protein 469108 4239919 HS_0443 Haemophilus somnus 129PT ParA-like protein YP_718652.1 468440 D 205914 CDS YP_718653.1 113460589 4239920 469110..469553 1 NC_008309.1 hypothetical protein 469553 4239920 HS_0444 Haemophilus somnus 129PT hypothetical protein YP_718653.1 469110 D 205914 CDS YP_718654.1 113460590 4239921 complement(469567..470145) 1 NC_008309.1 resolvase/integrase-like protein 470145 4239921 HS_0445 Haemophilus somnus 129PT resolvase/integrase-like protein YP_718654.1 469567 R 205914 CDS YP_718655.1 113460591 4239922 470536..471993 1 NC_008309.1 hypothetical protein 471993 4239922 HS_0446 Haemophilus somnus 129PT hypothetical protein YP_718655.1 470536 D 205914 CDS YP_718656.1 113460592 4239923 complement(472432..472653) 1 NC_008309.1 hypothetical protein 472653 4239923 HS_0447 Haemophilus somnus 129PT hypothetical protein YP_718656.1 472432 R 205914 CDS YP_718657.1 113461937 4239924 complement(472874..473056) 1 NC_008309.1 hypothetical protein 473056 4239924 HS_0447a Haemophilus somnus 129PT hypothetical protein YP_718657.1 472874 R 205914 CDS YP_718658.1 113460593 4239925 473089..475053 1 NC_008309.1 transferrin-binding protein 475053 tbpB 4239925 tbpB Haemophilus somnus 129PT transferrin-binding protein YP_718658.1 473089 D 205914 CDS YP_718659.1 113460594 4239926 475187..478165 1 NC_008309.1 transferrin-binding protein A 478165 tbpA 4239926 tbpA Haemophilus somnus 129PT transferrin-binding protein A YP_718659.1 475187 D 205914 CDS YP_718660.1 113460595 4239927 478475..480355 1 NC_008309.1 molecular chaperone; heat shock protein 90 480355 htpG 4239927 htpG Haemophilus somnus 129PT heat shock protein 90 YP_718660.1 478475 D 205914 CDS YP_718661.1 113460596 4239928 481084..482853 1 NC_008309.1 hypothetical protein 482853 4239928 HS_0451 Haemophilus somnus 129PT hypothetical protein YP_718661.1 481084 D 205914 CDS YP_718662.1 113460597 4239929 482850..483539 1 NC_008309.1 hypothetical protein 483539 4239929 HS_0452 Haemophilus somnus 129PT hypothetical protein YP_718662.1 482850 D 205914 CDS YP_718663.1 113460598 4239930 483539..484348 1 NC_008309.1 hypothetical protein 484348 4239930 HS_0453 Haemophilus somnus 129PT hypothetical protein YP_718663.1 483539 D 205914 CDS YP_718664.1 113460599 4239931 485040..485282 1 NC_008309.1 hypothetical protein 485282 4239931 HS_0454 Haemophilus somnus 129PT hypothetical protein YP_718664.1 485040 D 205914 CDS YP_718665.1 113460600 4239932 485279..486055 1 NC_008309.1 4'-phosphopantetheinyl transferase 486055 4239932 HS_0455 Haemophilus somnus 129PT 4'-phosphopantetheinyl transferase YP_718665.1 485279 D 205914 CDS YP_718666.1 113460601 4239934 complement(486393..487835) 1 NC_008309.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 487835 gltX 4239934 gltX Haemophilus somnus 129PT glutamyl-tRNA synthetase YP_718666.1 486393 R 205914 CDS YP_718667.1 113460602 4239938 488524..489744 1 NC_008309.1 type IV pilus assembly protein; protein transport protein 489744 pilC 4239938 pilC Haemophilus somnus 129PT protein transport protein YP_718667.1 488524 D 205914 CDS YP_718668.1 113460603 4239939 489741..490448 1 NC_008309.1 prepilin peptidase 490448 pilD 4239939 pilD Haemophilus somnus 129PT prepilin peptidase YP_718668.1 489741 D 205914 CDS YP_718669.1 113460604 4239940 490468..491115 1 NC_008309.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 491115 coaE 4239940 coaE Haemophilus somnus 129PT dephospho-CoA kinase YP_718669.1 490468 D 205914 CDS YP_718670.1 113460605 4239941 491112..491306 1 NC_008309.1 hypothetical protein 491306 4239941 HS_0460 Haemophilus somnus 129PT hypothetical protein YP_718670.1 491112 D 205914 CDS YP_718671.1 113461938 4239942 491479..491640 1 NC_008309.1 hypothetical protein 491640 4239942 HS_0460a Haemophilus somnus 129PT hypothetical protein YP_718671.1 491479 D 205914 CDS YP_718672.1 113460606 4239943 491711..493087 1 NC_008309.1 D-alanine glycine permease 493087 4239943 HS_0461 Haemophilus somnus 129PT D-alanine glycine permease YP_718672.1 491711 D 205914 CDS YP_718673.1 113460607 4239944 493323..493640 1 NC_008309.1 sigma 54 modulation protein / SSU ribosomal protein S30P 493640 4239944 HS_0462 Haemophilus somnus 129PT sigma 54 modulation protein / SSU ribosomal protein S30P YP_718673.1 493323 D 205914 CDS YP_718674.1 113460608 4239945 493844..494383 1 NC_008309.1 hypoxanthine phosphoribosyltransferase 494383 hpt 4239945 hpt Haemophilus somnus 129PT hypoxanthine phosphoribosyltransferase YP_718674.1 493844 D 205914 CDS YP_718675.1 113460609 4239946 complement(494512..495141) 1 NC_008309.1 superoxide dismutase, manganese 495141 sodA 4239946 sodA Haemophilus somnus 129PT superoxide dismutase, manganese YP_718675.1 494512 R 205914 CDS YP_718676.1 113460610 4239947 complement(495280..497547) 1 NC_008309.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 497547 mdh 4239947 mdh Haemophilus somnus 129PT malic enzyme YP_718676.1 495280 R 205914 CDS YP_718677.2 161486693 4239948 complement(497743..499158) 1 NC_008309.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 499158 aspA 4239948 aspA Haemophilus somnus 129PT aspartate ammonia-lyase YP_718677.2 497743 R 205914 CDS YP_718678.1 113460612 4239949 499396..499686 1 NC_008309.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 499686 groES 4239949 groES Haemophilus somnus 129PT co-chaperonin GroES YP_718678.1 499396 D 205914 CDS YP_718679.1 113460613 4239950 499717..501360 1 NC_008309.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 501360 groEL 4239950 groEL Haemophilus somnus 129PT chaperonin GroEL YP_718679.1 499717 D 205914 CDS YP_718680.1 113460614 4239951 501532..501849 1 NC_008309.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ 501849 metJ 4239951 metJ Haemophilus somnus 129PT transcriptional repressor protein MetJ YP_718680.1 501532 D 205914 CDS YP_718681.1 113460615 4239952 501891..502535 1 NC_008309.1 hypothetical protein 502535 4239952 HS_0470 Haemophilus somnus 129PT hypothetical protein YP_718681.1 501891 D 205914 CDS YP_718682.1 113460616 4239953 502539..502982 1 NC_008309.1 hypothetical protein 502982 4239953 HS_0471 Haemophilus somnus 129PT hypothetical protein YP_718682.1 502539 D 205914 CDS YP_718683.1 113460617 4239954 502983..504350 1 NC_008309.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 504350 hemN 4239954 hemN Haemophilus somnus 129PT coproporphyrinogen III oxidase YP_718683.1 502983 D 205914 CDS YP_718684.1 113460618 4239955 complement(504384..504866) 1 NC_008309.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 504866 smpB 4239955 smpB Haemophilus somnus 129PT SsrA-binding protein YP_718684.1 504384 R 205914 CDS YP_718685.1 113460619 4239956 504994..506469 1 NC_008309.1 3-octaprenyl-4hydroxybenzoate decarboxylase 506469 ubiD 4239956 ubiD Haemophilus somnus 129PT 3-octaprenyl-4hydroxybenzoate decarboxylase YP_718685.1 504994 D 205914 CDS YP_718686.1 113460620 4239957 complement(506509..507699) 1 NC_008309.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 507699 metC 4239957 metC Haemophilus somnus 129PT cystathionine beta-lyase YP_718686.1 506509 R 205914 CDS YP_718687.1 113460621 4239958 507852..508454 1 NC_008309.1 peroxiredoxin; AhpC/TSA family protein 508454 tsaA 4239958 tsaA Haemophilus somnus 129PT AhpC/TSA family protein YP_718687.1 507852 D 205914 CDS YP_718688.1 113460622 4239959 complement(508639..508908) 1 NC_008309.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 508908 rpsO 4239959 rpsO Haemophilus somnus 129PT 30S ribosomal protein S15 YP_718688.1 508639 R 205914 CDS YP_718689.1 113460623 4239960 complement(509163..517718) 1 NC_008309.1 cell-surface large adhesin 517718 4239960 HS_0478 Haemophilus somnus 129PT cell-surface large adhesin YP_718689.1 509163 R 205914 CDS YP_718690.1 113460624 4239961 518592..520658 1 NC_008309.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 520658 glyS 4239961 glyS Haemophilus somnus 129PT glycyl-tRNA synthetase subunit beta YP_718690.1 518592 D 205914 CDS YP_718691.1 113460625 4239962 complement(520757..521140) 1 NC_008309.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 521140 4239962 HS_0480 Haemophilus somnus 129PT autonomous glycyl radical cofactor GrcA YP_718691.1 520757 R 205914 CDS YP_718692.1 113460626 4239963 521400..522071 1 NC_008309.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 522071 ung 4239963 ung Haemophilus somnus 129PT uracil-DNA glycosylase YP_718692.1 521400 D 205914 CDS YP_718693.1 113460627 4239964 522087..522863 1 NC_008309.1 hypothetical protein 522863 4239964 HS_0482 Haemophilus somnus 129PT hypothetical protein YP_718693.1 522087 D 205914 CDS YP_718694.1 113460628 4239965 522860..523414 1 NC_008309.1 hypothetical protein 523414 4239965 HS_0483 Haemophilus somnus 129PT hypothetical protein YP_718694.1 522860 D 205914 CDS YP_718695.1 113460629 4239966 523429..524325 1 NC_008309.1 cation efflux protein 524325 4239966 HS_0484 Haemophilus somnus 129PT cation efflux protein YP_718695.1 523429 D 205914 CDS YP_718696.1 113460630 4239967 524438..525403 1 NC_008309.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 525403 pfkA 4239967 pfkA Haemophilus somnus 129PT 6-phosphofructokinase YP_718696.1 524438 D 205914 CDS YP_718697.1 113460631 4239968 525674..526720 1 NC_008309.1 transposase 526720 4239968 HS_0486 Haemophilus somnus 129PT transposase YP_718697.1 525674 D 205914 CDS YP_718698.1 113460632 4239969 527119..528381 1 NC_008309.1 phage lambda CII stabilizer; possible CII-specific protease; HflK protein 528381 hflK 4239969 hflK Haemophilus somnus 129PT HflK protein YP_718698.1 527119 D 205914 CDS YP_718699.1 113460633 4239970 528381..529268 1 NC_008309.1 protease specific for phage lambda CII repressor; HflC protein 529268 hflC 4239970 hflC Haemophilus somnus 129PT HflC protein YP_718699.1 528381 D 205914 CDS YP_718700.1 113460634 4239971 529557..531968 1 NC_008309.1 Lon-A peptidase 531968 lon 4239971 lon Haemophilus somnus 129PT Lon-A peptidase YP_718700.1 529557 D 205914 CDS YP_718701.1 113460635 4239972 532146..532550 1 NC_008309.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 532550 holD 4239972 holD Haemophilus somnus 129PT DNA polymerase III subunit psi YP_718701.1 532146 D 205914 CDS YP_718702.1 113460636 4239973 532554..533000 1 NC_008309.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 533000 rimI 4239973 rimI Haemophilus somnus 129PT ribosomal-protein-alanine N-acetyltransferase YP_718702.1 532554 D 205914 CDS YP_718703.1 113460637 4239974 complement(533075..533971) 1 NC_008309.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 533971 dapA 4239974 dapA Haemophilus somnus 129PT dihydrodipicolinate synthase YP_718703.1 533075 R 205914 CDS YP_718704.1 113460638 4239975 534081..534557 1 NC_008309.1 bacterioferritin comigratory protein; thiol peroxidase; thioredoxin-dependent; hydroperoxide peroxidase; in Escherichia coli this enzyme preferentially reduces linoleic acid hydroperoxide; contains an active site cysteine; thioredoxin-dependent thiol peroxidase 534557 bcp 4239975 bcp Haemophilus somnus 129PT thioredoxin-dependent thiol peroxidase YP_718704.1 534081 D 205914 CDS YP_718705.1 113460639 4239976 complement(534638..535657) 1 NC_008309.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 535657 ilvE 4239976 ilvE Haemophilus somnus 129PT branched-chain amino acid aminotransferase YP_718705.1 534638 R 205914 CDS YP_718706.1 113460640 4239977 536097..537002 1 NC_008309.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA 537002 gcvA 4239977 gcvA Haemophilus somnus 129PT DNA-binding transcriptional activator GcvA YP_718706.1 536097 D 205914 CDS YP_718707.1 113460641 4239978 536995..538080 1 NC_008309.1 RNA 2'-O-ribose methyltransferase 538080 4239978 HS_0496 Haemophilus somnus 129PT RNA 2'-O-ribose methyltransferase YP_718707.1 536995 D 205914 CDS YP_718708.1 113460642 4239979 538228..540408 1 NC_008309.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II 540408 uvrD 4239979 uvrD Haemophilus somnus 129PT DNA-dependent helicase II YP_718708.1 538228 D 205914 CDS YP_718709.1 113460643 4239980 complement(540474..541178) 1 NC_008309.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 541178 lpxH 4239980 lpxH Haemophilus somnus 129PT UDP-2,3-diacylglucosamine hydrolase YP_718709.1 540474 R 205914 CDS YP_718710.1 113460644 4239981 541289..542014 1 NC_008309.1 1-acyl-sn-glycerol-3-phosphate acyltransferase 542014 plsC 4239981 plsC Haemophilus somnus 129PT 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_718710.1 541289 D 205914 CDS YP_718711.1 113460645 4239982 542030..543433 1 NC_008309.1 cell division protein SufI 543433 sufI 4239982 sufI Haemophilus somnus 129PT cell division protein SufI YP_718711.1 542030 D 205914 CDS YP_718712.1 113460646 4239983 complement(543483..544139) 1 NC_008309.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 544139 rnt 4239983 rnt Haemophilus somnus 129PT ribonuclease T YP_718712.1 543483 R 205914 CDS YP_718713.1 113460647 4239984 complement(544227..544637) 1 NC_008309.1 lactoylglutathione lyase 544637 gloA 4239984 gloA Haemophilus somnus 129PT lactoylglutathione lyase YP_718713.1 544227 R 205914 CDS YP_718714.1 113460648 4239985 complement(544887..545978) 1 NC_008309.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 545978 engD 4239985 engD Haemophilus somnus 129PT GTP-dependent nucleic acid-binding protein EngD YP_718714.1 544887 R 205914 CDS YP_718715.1 113460649 4239986 complement(546045..546629) 1 NC_008309.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 546629 pth 4239986 pth Haemophilus somnus 129PT peptidyl-tRNA hydrolase YP_718715.1 546045 R 205914 CDS YP_718716.1 113460650 4239987 546715..547242 1 NC_008309.1 hypothetical protein 547242 4239987 HS_0505 Haemophilus somnus 129PT hypothetical protein YP_718716.1 546715 D 205914 CDS YP_718717.1 113460651 4239988 547235..547567 1 NC_008309.1 hypothetical protein 547567 4239988 HS_0506 Haemophilus somnus 129PT hypothetical protein YP_718717.1 547235 D 205914 CDS YP_718718.1 113460652 4239989 547721..548173 1 NC_008309.1 converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase 548173 ntpA 4239989 ntpA Haemophilus somnus 129PT dATP pyrophosphohydrolase YP_718718.1 547721 D 205914 CDS YP_718719.1 113460653 4239990 548175..548915 1 NC_008309.1 hypothetical protein 548915 4239990 HS_0508 Haemophilus somnus 129PT hypothetical protein YP_718719.1 548175 D 205914 CDS YP_718720.1 113460654 4239991 549074..549643 1 NC_008309.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 549643 ruvC 4239991 ruvC Haemophilus somnus 129PT Holliday junction resolvase YP_718720.1 549074 D 205914 CDS YP_718721.1 113460655 4239992 complement(549723..550808) 1 NC_008309.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 550808 glpQ 4239992 glpQ Haemophilus somnus 129PT glycerophosphodiester phosphodiesterase YP_718721.1 549723 R 205914 CDS YP_718722.1 113460656 4239993 complement(550922..552367) 1 NC_008309.1 glycerol 3-phosphate transporter 552367 glpT 4239993 glpT Haemophilus somnus 129PT glycerol 3-phosphate transporter YP_718722.1 550922 R 205914 CDS YP_718723.1 113460657 4239994 552693..554381 1 NC_008309.1 anaerobic, catalyzes the conversion of glycerol 3-phosphate to dihydroxyacetone using fumarate or nitrate as electron acceptor; sn-glycerol-3-phosphate dehydrogenase subunit A 554381 glpA 4239994 glpA Haemophilus somnus 129PT sn-glycerol-3-phosphate dehydrogenase subunit A YP_718723.1 552693 D 205914 CDS YP_718724.1 113460658 4239995 554371..555669 1 NC_008309.1 sn-glycerol-3-phosphate dehydrogenase (anaerobic); catalyzes the formation of dihydroxyacetone from glycerol 3-phosphate; part of GlpABC complex; presumably this subunit is responsible for membrane interactions and contains iron-sulfur clusters; anaerobic glycerol-3-phosphate dehydrogenase subunit B 555669 glpB 4239995 glpB Haemophilus somnus 129PT anaerobic glycerol-3-phosphate dehydrogenase subunit B YP_718724.1 554371 D 205914 CDS YP_718725.1 113460659 4239996 555680..556951 1 NC_008309.1 anaerobic; with GlpAB catalyzes the conversion of glycerol-3-phosphate to dihydroxyacetone phosphate; sn-glycerol-3-phosphate dehydrogenase subunit C 556951 glpC 4239996 glpC Haemophilus somnus 129PT sn-glycerol-3-phosphate dehydrogenase subunit C YP_718725.1 555680 D 205914 CDS YP_718726.1 113460660 4239997 complement(557001..557759) 1 NC_008309.1 glycerol-3-phosphate regulon repressor 557759 glpR 4239997 glpR Haemophilus somnus 129PT glycerol-3-phosphate regulon repressor YP_718726.1 557001 R 205914 CDS YP_718727.1 113460661 4239998 complement(558033..559520) 1 NC_008309.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 559520 pepA 4239998 pepA Haemophilus somnus 129PT leucyl aminopeptidase YP_718727.1 558033 R 205914 CDS YP_718728.1 113460662 4239999 559639..560742 1 NC_008309.1 permease 560742 4239999 HS_0517 Haemophilus somnus 129PT permease YP_718728.1 559639 D 205914 CDS YP_718729.1 113460663 4240000 560755..561825 1 NC_008309.1 permease 561825 4240000 HS_0518 Haemophilus somnus 129PT permease YP_718729.1 560755 D 205914 CDS YP_718730.1 113460664 4240002 562270..563574 1 NC_008309.1 phage integrase 563574 intA 4240002 intA Haemophilus somnus 129PT phage integrase YP_718730.1 562270 D 205914 CDS YP_718731.1 113460665 4240003 564106..564357 1 NC_008309.1 hypothetical protein 564357 4240003 HS_0520 Haemophilus somnus 129PT hypothetical protein YP_718731.1 564106 D 205914 CDS YP_718732.1 113460666 4240004 564367..564879 1 NC_008309.1 hypothetical protein 564879 4240004 HS_0521 Haemophilus somnus 129PT hypothetical protein YP_718732.1 564367 D 205914 CDS YP_718733.1 113460667 4240005 565047..565268 1 NC_008309.1 phage transcriptional regulator 565268 4240005 HS_0522 Haemophilus somnus 129PT phage transcriptional regulator YP_718733.1 565047 D 205914 CDS YP_718734.1 113460668 4240006 565278..565523 1 NC_008309.1 hypothetical protein 565523 4240006 HS_0523 Haemophilus somnus 129PT hypothetical protein YP_718734.1 565278 D 205914 CDS YP_718735.1 113460669 4240007 565524..565763 1 NC_008309.1 hypothetical protein 565763 4240007 HS_0524 Haemophilus somnus 129PT hypothetical protein YP_718735.1 565524 D 205914 CDS YP_718736.1 113460670 4240008 565777..566259 1 NC_008309.1 hypothetical protein 566259 4240008 HS_0525 Haemophilus somnus 129PT hypothetical protein YP_718736.1 565777 D 205914 CDS YP_718737.1 113460671 4240009 566252..566476 1 NC_008309.1 hypothetical protein 566476 4240009 HS_0526 Haemophilus somnus 129PT hypothetical protein YP_718737.1 566252 D 205914 CDS YP_718738.1 113460672 4240010 566469..566729 1 NC_008309.1 hypothetical protein 566729 4240010 HS_0527 Haemophilus somnus 129PT hypothetical protein YP_718738.1 566469 D 205914 CDS YP_718739.1 113460673 4240011 566868..567359 1 NC_008309.1 hypothetical protein 567359 4240011 HS_0528 Haemophilus somnus 129PT hypothetical protein YP_718739.1 566868 D 205914 CDS YP_718740.1 113460674 4240012 567352..567585 1 NC_008309.1 hypothetical protein 567585 4240012 HS_0529 Haemophilus somnus 129PT hypothetical protein YP_718740.1 567352 D 205914 CDS YP_718741.1 113460675 4240013 567578..567829 1 NC_008309.1 hypothetical protein 567829 4240013 HS_0530 Haemophilus somnus 129PT hypothetical protein YP_718741.1 567578 D 205914 CDS YP_718742.1 113460676 4240014 567813..568184 1 NC_008309.1 hypothetical protein 568184 4240014 HS_0531 Haemophilus somnus 129PT hypothetical protein YP_718742.1 567813 D 205914 CDS YP_718743.1 113460677 4240015 568181..568708 1 NC_008309.1 hypothetical protein 568708 4240015 HS_0532 Haemophilus somnus 129PT hypothetical protein YP_718743.1 568181 D 205914 CDS YP_718744.1 113460678 4240016 568711..570621 1 NC_008309.1 phage DNA primase-like protein 570621 4240016 HS_0533 Haemophilus somnus 129PT phage DNA primase-like protein YP_718744.1 568711 D 205914 CDS YP_718745.1 113460679 4240017 571152..571433 1 NC_008309.1 hypothetical protein 571433 4240017 HS_0534 Haemophilus somnus 129PT hypothetical protein YP_718745.1 571152 D 205914 CDS YP_718746.1 113460680 4240018 571469..571864 1 NC_008309.1 transcriptional regulator 571864 4240018 HS_0535 Haemophilus somnus 129PT transcriptional regulator YP_718746.1 571469 D 205914 CDS YP_718747.1 113460681 4240019 572003..572296 1 NC_008309.1 hypothetical protein 572296 4240019 HS_0536 Haemophilus somnus 129PT hypothetical protein YP_718747.1 572003 D 205914 CDS YP_718748.1 113460682 4240020 572309..572896 1 NC_008309.1 hypothetical protein 572896 4240020 HS_0537 Haemophilus somnus 129PT hypothetical protein YP_718748.1 572309 D 205914 CDS YP_718749.1 113460683 4240021 572889..573335 1 NC_008309.1 hypothetical protein 573335 4240021 HS_0538 Haemophilus somnus 129PT hypothetical protein YP_718749.1 572889 D 205914 CDS YP_718750.1 113460684 4240022 573579..573782 1 NC_008309.1 hypothetical protein 573782 4240022 HS_0539 Haemophilus somnus 129PT hypothetical protein YP_718750.1 573579 D 205914 CDS YP_718751.1 113460685 4240023 complement(574743..575204) 1 NC_008309.1 hypothetical protein 575204 4240023 HS_0540 Haemophilus somnus 129PT hypothetical protein YP_718751.1 574743 R 205914 CDS YP_718752.1 113460686 4240024 complement(575341..576051) 1 NC_008309.1 hypothetical protein 576051 4240024 HS_0541 Haemophilus somnus 129PT hypothetical protein YP_718752.1 575341 R 205914 CDS YP_718753.1 113460687 4240025 576234..577019 1 NC_008309.1 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase 577019 ubiE 4240025 ubiE Haemophilus somnus 129PT 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase YP_718753.1 576234 D 205914 CDS YP_718754.1 113460688 4240026 577028..577663 1 NC_008309.1 hypothetical protein 577663 4240026 HS_0543 Haemophilus somnus 129PT hypothetical protein YP_718754.1 577028 D 205914 CDS YP_718755.1 113460689 4240027 577663..579297 1 NC_008309.1 2-octaprenylphenol hydroxylase 579297 ubiB 4240027 ubiB Haemophilus somnus 129PT 2-octaprenylphenol hydroxylase YP_718755.1 577663 D 205914 CDS YP_718756.1 113460690 4240028 579402..579623 1 NC_008309.1 Sec-independent protein translocase 579623 tatA 4240028 tatA Haemophilus somnus 129PT Sec-independent protein translocase YP_718756.1 579402 D 205914 CDS YP_718757.1 113460691 4240029 579627..580181 1 NC_008309.1 Sec-independent protein translocase TatB 580181 tatB 4240029 tatB Haemophilus somnus 129PT Sec-independent protein translocase TatB YP_718757.1 579627 D 205914 CDS YP_718758.1 113460692 4240030 580178..580915 1 NC_008309.1 Sec-independent protein translocase TatC 580915 tatC 4240030 tatC Haemophilus somnus 129PT Sec-independent protein translocase TatC YP_718758.1 580178 D 205914 CDS YP_718759.1 113460693 4240031 580981..582003 1 NC_008309.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 582003 hemB 4240031 hemB Haemophilus somnus 129PT delta-aminolevulinic acid dehydratase YP_718759.1 580981 D 205914 CDS YP_718760.1 113460694 4240032 complement(582060..583241) 1 NC_008309.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 583241 purT 4240032 purT Haemophilus somnus 129PT phosphoribosylglycinamide formyltransferase 2 YP_718760.1 582060 R 205914 CDS YP_718761.1 113460695 4240033 complement(583282..583788) 1 NC_008309.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 583788 luxS 4240033 luxS Haemophilus somnus 129PT S-ribosylhomocysteinase YP_718761.1 583282 R 205914 CDS YP_718762.1 113460696 4240034 584087..586075 1 NC_008309.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 586075 tktB 4240034 tktB Haemophilus somnus 129PT transketolase YP_718762.1 584087 D 205914 CDS YP_718763.2 229131798 4240035 586302..587930 1 NC_008309.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 587930 pyrG 4240035 pyrG Haemophilus somnus 129PT CTP synthetase YP_718763.2 586302 D 205914 CDS YP_718764.1 113460698 4240036 complement(587978..589612) 1 NC_008309.1 acetyltransferase 589612 4240036 HS_0553 Haemophilus somnus 129PT acetyltransferase YP_718764.1 587978 R 205914 CDS YP_718765.1 113460699 4240037 589932..590333 1 NC_008309.1 hypothetical protein 590333 4240037 HS_0554 Haemophilus somnus 129PT hypothetical protein YP_718765.1 589932 D 205914 CDS YP_718766.1 113460700 4240038 590355..591281 1 NC_008309.1 phage integrase 591281 4240038 HS_0555 Haemophilus somnus 129PT phage integrase YP_718766.1 590355 D 205914 CDS YP_718767.1 113460701 4240039 complement(591294..591845) 1 NC_008309.1 type I restriction enzyme, specificity subunit 591845 hsdS 4240039 hsdS Haemophilus somnus 129PT type I restriction enzyme, specificity subunit YP_718767.1 591294 R 205914 CDS YP_718768.1 113460702 4240040 complement(592009..592530) 1 NC_008309.1 phage P1-like protein 592530 4240040 HS_0557 Haemophilus somnus 129PT phage P1-like protein YP_718768.1 592009 R 205914 CDS YP_718769.1 113460703 4240041 complement(592523..593221) 1 NC_008309.1 hypothetical protein 593221 rlfA 4240041 rlfA Haemophilus somnus 129PT hypothetical protein YP_718769.1 592523 R 205914 CDS YP_718770.1 113460704 4240042 complement(593223..596423) 1 NC_008309.1 type I site-specific deoxyribonuclease, restriction subunit 596423 hsdR 4240042 hsdR Haemophilus somnus 129PT type I site-specific deoxyribonuclease, restriction subunit YP_718770.1 593223 R 205914 CDS YP_718771.1 113460705 4240043 complement(596416..596994) 1 NC_008309.1 type I restriction enzyme, specificity subunit 596994 hsdS 4240043 hsdS Haemophilus somnus 129PT type I restriction enzyme, specificity subunit YP_718771.1 596416 R 205914 CDS YP_718772.1 113460706 4240044 597234..598535 1 NC_008309.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 598535 eno 4240044 eno Haemophilus somnus 129PT phosphopyruvate hydratase YP_718772.1 597234 D 205914 CDS YP_718773.1 113460707 4240045 598843..599679 1 NC_008309.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 599679 menB 4240045 menB Haemophilus somnus 129PT naphthoate synthase YP_718773.1 598843 D 205914 CDS YP_718774.1 113460708 4240046 599893..600891 1 NC_008309.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 600891 menC 4240046 menC Haemophilus somnus 129PT O-succinylbenzoate synthase YP_718774.1 599893 D 205914 CDS YP_718775.1 113460709 4240047 complement(600940..601236) 1 NC_008309.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis 601236 fis 4240047 fis Haemophilus somnus 129PT DNA-binding protein Fis YP_718775.1 600940 R 205914 CDS YP_718776.1 113460710 4240048 complement(601230..602213) 1 NC_008309.1 tRNA-dihydrouridine synthase B 602213 dusB 4240048 dusB Haemophilus somnus 129PT tRNA-dihydrouridine synthase B YP_718776.1 601230 R 205914 CDS YP_718777.1 113460711 4240049 complement(602400..603290) 1 NC_008309.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 603290 prmA 4240049 prmA Haemophilus somnus 129PT ribosomal protein L11 methyltransferase YP_718777.1 602400 R 205914 CDS YP_718778.1 113460712 4240050 complement(603291..604733) 1 NC_008309.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter 604733 panF 4240050 panF Haemophilus somnus 129PT sodium/panthothenate symporter YP_718778.1 603291 R 205914 CDS YP_718779.1 113461939 4240051 complement(604730..604966) 1 NC_008309.1 hypothetical protein 604966 4240051 HS_0567a Haemophilus somnus 129PT hypothetical protein YP_718779.1 604730 R 205914 CDS YP_718780.1 113460713 4240052 complement(605038..606384) 1 NC_008309.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 606384 accC 4240052 accC Haemophilus somnus 129PT acetyl-CoA carboxylase biotin carboxylase subunit YP_718780.1 605038 R 205914 CDS YP_718781.1 113460714 4240053 complement(606445..606906) 1 NC_008309.1 biotin carboxyl carrier protein 606906 accB 4240053 accB Haemophilus somnus 129PT biotin carboxyl carrier protein YP_718781.1 606445 R 205914 CDS YP_718782.1 113460715 4240054 complement(607095..607547) 1 NC_008309.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 607547 aroQ 4240054 aroQ Haemophilus somnus 129PT 3-dehydroquinate dehydratase YP_718782.1 607095 R 205914 CDS YP_718783.1 113460716 4240055 607825..608745 1 NC_008309.1 SPFH domain-containing protein/band 7 family protein 608745 4240055 HS_0571 Haemophilus somnus 129PT SPFH domain-containing protein/band 7 family protein YP_718783.1 607825 D 205914 CDS YP_718784.1 113460717 4240056 608792..609235 1 NC_008309.1 regulator of membrane protease activity 609235 4240056 HS_0572 Haemophilus somnus 129PT regulator of membrane protease activity YP_718784.1 608792 D 205914 CDS YP_718785.1 113460718 4240057 609245..609865 1 NC_008309.1 quinone family NAD(P)H dehydrogenase 609865 4240057 HS_0573 Haemophilus somnus 129PT quinone family NAD(P)H dehydrogenase YP_718785.1 609245 D 205914 CDS YP_718786.1 113460719 4240058 609877..610425 1 NC_008309.1 oxidoreductase component 610425 4240058 HS_0574 Haemophilus somnus 129PT oxidoreductase component YP_718786.1 609877 D 205914 CDS YP_718787.1 113460720 4240059 complement(610451..611389) 1 NC_008309.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 611389 htrB 4240059 htrB Haemophilus somnus 129PT lipid A biosynthesis lauroyl acyltransferase YP_718787.1 610451 R 205914 CDS YP_718788.1 113460721 4240060 611515..612942 1 NC_008309.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 612942 rfaE 4240060 rfaE Haemophilus somnus 129PT bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_718788.1 611515 D 205914 CDS YP_718789.1 113460722 4240061 612952..613296 1 NC_008309.1 arsenate reductase 613296 4240061 HS_0577 Haemophilus somnus 129PT arsenate reductase YP_718789.1 612952 D 205914 CDS YP_718790.1 113460723 4240062 613409..614542 1 NC_008309.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 614542 dapE 4240062 dapE Haemophilus somnus 129PT succinyl-diaminopimelate desuccinylase YP_718790.1 613409 D 205914 CDS YP_718791.1 113460724 4240063 614496..615212 1 NC_008309.1 D-alanyl-D-alanine carboxypeptidase-like protein 615212 4240063 HS_0579 Haemophilus somnus 129PT D-alanyl-D-alanine carboxypeptidase-like protein YP_718791.1 614496 D 205914 CDS YP_718792.1 113460725 4240064 615265..615885 1 NC_008309.1 ADP-ribose diphosphatase 615885 nudF 4240064 nudF Haemophilus somnus 129PT ADP-ribose diphosphatase YP_718792.1 615265 D 205914 CDS YP_718793.1 113460726 4240065 616024..616854 1 NC_008309.1 cyclic 3',5'-adenosine monophosphate phosphodiesterase 616854 icc 4240065 icc Haemophilus somnus 129PT cyclic 3',5'-adenosine monophosphate phosphodiesterase YP_718793.1 616024 D 205914 CDS YP_718794.1 113460727 4240066 complement(616932..619298) 1 NC_008309.1 transferrin binding protein A; heme uptake protein 619298 hpuB 4240066 hpuB Haemophilus somnus 129PT heme uptake protein YP_718794.1 616932 R 205914 CDS YP_718795.1 113460728 4240067 619605..620651 1 NC_008309.1 transposase 620651 4240067 HS_0583 Haemophilus somnus 129PT transposase YP_718795.1 619605 D 205914 CDS YP_718796.1 113460729 4240068 complement(620843..621916) 1 NC_008309.1 D-xylose ABC transporter permease 621916 xylH 4240068 xylH Haemophilus somnus 129PT D-xylose ABC transporter permease YP_718796.1 620843 R 205914 CDS YP_718797.1 113460730 4240069 complement(621974..623488) 1 NC_008309.1 with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit 623488 xylG 4240069 xylG Haemophilus somnus 129PT xylose transporter ATP-binding subunit YP_718797.1 621974 R 205914 CDS YP_718798.1 113460731 4240070 complement(623548..624549) 1 NC_008309.1 periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF 624549 xylF 4240070 xylF Haemophilus somnus 129PT D-xylose transporter subunit XylF YP_718798.1 623548 R 205914 CDS YP_718799.1 113460732 4240071 624797..626122 1 NC_008309.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 626122 xylA 4240071 xylA Haemophilus somnus 129PT xylose isomerase YP_718799.1 624797 D 205914 CDS YP_718800.1 113460733 4240072 626191..627651 1 NC_008309.1 xylulokinase 627651 xylB 4240072 xylB Haemophilus somnus 129PT xylulokinase YP_718800.1 626191 D 205914 CDS YP_718801.1 113460734 4240073 complement(627781..628941) 1 NC_008309.1 adhesin 628941 4240073 HS_0589 Haemophilus somnus 129PT adhesin YP_718801.1 627781 R 205914 CDS YP_718802.1 113460735 4240074 complement(629239..630033) 1 NC_008309.1 peptide ABC transporter ATP-binding protein 630033 sapF 4240074 sapF Haemophilus somnus 129PT peptide ABC transporter ATP-binding protein YP_718802.1 629239 R 205914 CDS YP_718803.1 113460736 4240075 complement(630049..631095) 1 NC_008309.1 peptide ABC transporter ATP-binding protein 631095 sapD 4240075 sapD Haemophilus somnus 129PT peptide ABC transporter ATP-binding protein YP_718803.1 630049 R 205914 CDS YP_718804.1 113460737 4240076 complement(631107..631994) 1 NC_008309.1 peptide ABC transporter permease 631994 sapC 4240076 sapC Haemophilus somnus 129PT peptide ABC transporter permease YP_718804.1 631107 R 205914 CDS YP_718805.1 113460738 4240077 complement(631984..632949) 1 NC_008309.1 peptide ABC transporter permease 632949 sapB 4240077 sapB Haemophilus somnus 129PT peptide ABC transporter permease YP_718805.1 631984 R 205914 CDS YP_718806.1 113460739 4240078 complement(632977..634665) 1 NC_008309.1 peptide ABC transporter periplasmic-binding protein 634665 sapA 4240078 sapA Haemophilus somnus 129PT peptide ABC transporter periplasmic-binding protein YP_718806.1 632977 R 205914 CDS YP_718807.1 113460740 4240079 634732..636141 1 NC_008309.1 hypothetical protein 636141 4240079 HS_0595 Haemophilus somnus 129PT hypothetical protein YP_718807.1 634732 D 205914 CDS YP_718808.1 113460741 4240080 636151..637224 1 NC_008309.1 hypothetical protein 637224 4240080 HS_0596 Haemophilus somnus 129PT hypothetical protein YP_718808.1 636151 D 205914 CDS YP_718809.1 113460742 4240081 complement(637331..637594) 1 NC_008309.1 functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase; also involved in reducing some disulfides in a coupled system with glutathione reductase; glutaredoxin 1 637594 grxA 4240081 grxA Haemophilus somnus 129PT glutaredoxin 1 YP_718809.1 637331 R 205914 CDS YP_718810.1 113460743 4240082 complement(637715..639961) 1 NC_008309.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 639961 parC 4240082 parC Haemophilus somnus 129PT DNA topoisomerase IV subunit A YP_718810.1 637715 R 205914 CDS YP_718811.1 113460744 4240083 complement(640056..641948) 1 NC_008309.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 641948 parE 4240083 parE Haemophilus somnus 129PT DNA topoisomerase IV subunit B YP_718811.1 640056 R 205914 CDS YP_718812.1 113460745 4240084 complement(642004..643290) 1 NC_008309.1 beta-lactamase synthesis signal transducer; AmpG protein 643290 ampG 4240084 ampG Haemophilus somnus 129PT AmpG protein YP_718812.1 642004 R 205914 CDS YP_718813.1 113460746 4240085 643495..644784 1 NC_008309.1 xanthine/uracil family permease 644784 4240085 HS_0601 Haemophilus somnus 129PT xanthine/uracil family permease YP_718813.1 643495 D 205914 CDS YP_718814.1 113460747 4240086 complement(644891..646105) 1 NC_008309.1 adhesin 646105 4240086 HS_0602 Haemophilus somnus 129PT adhesin YP_718814.1 644891 R 205914 CDS YP_718815.1 113460748 4240089 complement(646670..647428) 1 NC_008309.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 647428 dnaQ 4240089 dnaQ Haemophilus somnus 129PT DNA polymerase III subunit epsilon YP_718815.1 646670 R 205914 CDS YP_718816.1 113460749 4240090 647499..647963 1 NC_008309.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 647963 rnhA 4240090 rnhA Haemophilus somnus 129PT ribonuclease H YP_718816.1 647499 D 205914 CDS YP_718817.1 113460750 4240091 complement(648022..649227) 1 NC_008309.1 mannose-6-phosphate isomerase 649227 pmi 4240091 pmi Haemophilus somnus 129PT mannose-6-phosphate isomerase YP_718817.1 648022 R 205914 CDS YP_718818.1 113460751 4240092 complement(649224..649703) 1 NC_008309.1 hypothetical protein 649703 4240092 HS_0606 Haemophilus somnus 129PT hypothetical protein YP_718818.1 649224 R 205914 CDS YP_718819.1 113460752 4240093 complement(649761..650597) 1 NC_008309.1 hosphoenolpyruvate-dependent sugar phosphotransferase system catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IID with IIC forms the translocation channel; PTS system mannose-specific transporter subunit IID 650597 manZ 4240093 manZ Haemophilus somnus 129PT PTS system mannose-specific transporter subunit IID YP_718819.1 649761 R 205914 CDS YP_718820.1 113460753 4240094 complement(650612..651412) 1 NC_008309.1 protein-N(pi)-phosphohistidine-sugar phosphotransferase (mannose-specific phosphotransferase system IIC component) 651412 manY 4240094 manY Haemophilus somnus 129PT protein-N(pi)-phosphohistidine-sugar phosphotransferase (mannose-specific phosphotransferase system IIC component) YP_718820.1 650612 R 205914 CDS YP_718821.1 113460754 4240095 complement(651424..652395) 1 NC_008309.1 protein-N(pi)-phosphohistidine-sugar phosphotransferase (phosphotransferase system mannose/fructose-specific IIA component) 652395 manX 4240095 manX Haemophilus somnus 129PT protein-N(pi)-phosphohistidine-sugar phosphotransferase (phosphotransferase system mannose/fructose-specific IIA component) YP_718821.1 651424 R 205914 CDS YP_718822.1 113460755 4240096 complement(652616..652969) 1 NC_008309.1 hypothetical protein 652969 4240096 HS_0610 Haemophilus somnus 129PT hypothetical protein YP_718822.1 652616 R 205914 CDS YP_718823.1 113460756 4240097 653162..654238 1 NC_008309.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 654238 serC 4240097 serC Haemophilus somnus 129PT phosphoserine aminotransferase YP_718823.1 653162 D 205914 CDS YP_718824.1 113460757 4240098 654297..655406 1 NC_008309.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 655406 hisC 4240098 hisC Haemophilus somnus 129PT histidinol-phosphate aminotransferase YP_718824.1 654297 D 205914 CDS YP_718825.1 113460758 4240099 655469..656767 1 NC_008309.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 656767 aroA 4240099 aroA Haemophilus somnus 129PT 3-phosphoshikimate 1-carboxyvinyltransferase YP_718825.1 655469 D 205914 CDS YP_718826.1 113460759 4240100 657001..658215 1 NC_008309.1 membrane fusion protein 658215 4240100 HS_0614 Haemophilus somnus 129PT membrane fusion protein YP_718826.1 657001 D 205914 CDS YP_718827.1 113460760 4240101 658237..661353 1 NC_008309.1 cation/multidrug efflux protein 661353 acrB 4240101 acrB Haemophilus somnus 129PT cation/multidrug efflux protein YP_718827.1 658237 D 205914 CDS YP_718828.1 113460761 4240102 complement(661379..662137) 1 NC_008309.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 662137 4240102 HS_0616 Haemophilus somnus 129PT acyl-CoA thioester hydrolase YfbB YP_718828.1 661379 R 205914 CDS YP_718829.1 113460762 4240103 complement(662150..663856) 1 NC_008309.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 663856 menD 4240103 menD Haemophilus somnus 129PT 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_718829.1 662150 R 205914 CDS YP_718830.1 113460763 4240104 complement(663862..665145) 1 NC_008309.1 isochorismate synthase 665145 menF 4240104 menF Haemophilus somnus 129PT isochorismate synthase YP_718830.1 663862 R 205914 CDS YP_718831.1 113460764 4240105 665297..666511 1 NC_008309.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT 666511 4240105 HS_0619 Haemophilus somnus 129PT aminotransferase AlaT YP_718831.1 665297 D 205914 CDS YP_718832.1 113460765 4240107 complement(667230..667616) 1 NC_008309.1 transcriptional regulator 667616 4240107 HS_0620 Haemophilus somnus 129PT transcriptional regulator YP_718832.1 667230 R 205914 CDS YP_718833.1 113460766 4240108 667778..668578 1 NC_008309.1 hypothetical protein 668578 4240108 HS_0621 Haemophilus somnus 129PT hypothetical protein YP_718833.1 667778 D 205914 CDS YP_718834.1 113460767 4240109 668613..669866 1 NC_008309.1 hypothetical protein 669866 4240109 HS_0622 Haemophilus somnus 129PT hypothetical protein YP_718834.1 668613 D 205914 CDS YP_718835.1 113460768 4240110 complement(669927..670646) 1 NC_008309.1 Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 670646 fadR 4240110 fadR Haemophilus somnus 129PT fatty acid metabolism regulator YP_718835.1 669927 R 205914 CDS YP_718836.1 113460769 4240111 670750..671370 1 NC_008309.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B 671370 dshB 4240111 dshB Haemophilus somnus 129PT disulfide bond formation protein B YP_718836.1 670750 D 205914 CDS YP_718837.1 113460770 4240112 672127..673131 1 NC_008309.1 possible tellurium resistance protein; membrane protein 673131 terC 4240112 terC Haemophilus somnus 129PT membrane protein YP_718837.1 672127 D 205914 CDS YP_718838.1 113460771 4240113 673133..673495 1 NC_008309.1 hypothetical protein 673495 4240113 HS_0626 Haemophilus somnus 129PT hypothetical protein YP_718838.1 673133 D 205914 CDS YP_718839.1 113460772 4240114 673507..674157 1 NC_008309.1 hypothetical protein 674157 4240114 HS_0627 Haemophilus somnus 129PT hypothetical protein YP_718839.1 673507 D 205914 CDS YP_718840.1 113460773 4240115 674167..674805 1 NC_008309.1 hypothetical protein 674805 4240115 HS_0628 Haemophilus somnus 129PT hypothetical protein YP_718840.1 674167 D 205914 CDS YP_718841.1 113460774 4240116 674853..675530 1 NC_008309.1 hypothetical protein 675530 4240116 HS_0629 Haemophilus somnus 129PT hypothetical protein YP_718841.1 674853 D 205914 CDS YP_718842.1 113460775 4240117 675539..676570 1 NC_008309.1 hypothetical protein 676570 4240117 HS_0630 Haemophilus somnus 129PT hypothetical protein YP_718842.1 675539 D 205914 CDS YP_718843.1 113460776 4240118 676573..678123 1 NC_008309.1 hypothetical protein 678123 4240118 HS_0631 Haemophilus somnus 129PT hypothetical protein YP_718843.1 676573 D 205914 CDS YP_718844.1 113460777 4240119 678116..679612 1 NC_008309.1 serine/threonine kinase-like protein 679612 4240119 HS_0632 Haemophilus somnus 129PT serine/threonine kinase-like protein YP_718844.1 678116 D 205914 CDS YP_718845.1 113460778 4240120 679642..680220 1 NC_008309.1 tellurium resistance protein; stress response protein 680220 terD 4240120 terD Haemophilus somnus 129PT stress response protein YP_718845.1 679642 D 205914 CDS YP_718846.1 113460779 4240121 680223..680969 1 NC_008309.1 tellurium resistance protein; stress response protein 680969 terE 4240121 terE Haemophilus somnus 129PT stress response protein YP_718846.1 680223 D 205914 CDS YP_718847.1 113460780 4240122 680979..681560 1 NC_008309.1 tellurium resistance protein; stress response protein 681560 terZ 4240122 terZ Haemophilus somnus 129PT stress response protein YP_718847.1 680979 D 205914 CDS YP_718848.1 113460781 4240123 complement(682438..683502) 1 NC_008309.1 glycosyltransferase family 8 lipopolysaccharide biosynthesis protein 683502 lob2d 4240123 lob2d Haemophilus somnus 129PT glycosyltransferase family 8 lipopolysaccharide biosynthesis protein YP_718848.1 682438 R 205914 CDS YP_718849.1 113460782 4240125 complement(683679..684155) 1 NC_008309.1 lipooligosaccharide biosynthesis protein 684155 lob2A 4240125 lob2A Haemophilus somnus 129PT lipooligosaccharide biosynthesis protein YP_718849.1 683679 R 205914 CDS YP_718850.1 113460783 4240126 684277..685170 1 NC_008309.1 Lob1 protein 685170 lob1 4240126 lob1 Haemophilus somnus 129PT Lob1 protein YP_718850.1 684277 D 205914 CDS YP_718851.1 113460784 4240127 complement(685341..686390) 1 NC_008309.1 Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit 686390 fbpC 4240127 fbpC Haemophilus somnus 129PT ferric transporter ATP-binding subunit YP_718851.1 685341 R 205914 CDS YP_718852.1 113460785 4240128 complement(686457..688514) 1 NC_008309.1 Fe3+ ABC transporter permease 688514 afuB 4240128 afuB Haemophilus somnus 129PT Fe3+ ABC transporter permease YP_718852.1 686457 R 205914 CDS YP_718853.1 113460786 4240129 complement(688536..689567) 1 NC_008309.1 Fe3+ ABC transporter iron-binding protein 689567 afuA 4240129 afuA Haemophilus somnus 129PT Fe3+ ABC transporter iron-binding protein YP_718853.1 688536 R 205914 CDS YP_718854.1 113460787 4240130 complement(689621..690274) 1 NC_008309.1 insertion element IS1016 transposase 690274 4240130 HS_0642 Haemophilus somnus 129PT insertion element IS1016 transposase YP_718854.1 689621 R 205914 CDS YP_718855.1 113460788 4240131 complement(690316..691356) 1 NC_008309.1 Fe3+ ABC transporter iron-binding protein 691356 afuA 4240131 afuA Haemophilus somnus 129PT Fe3+ ABC transporter iron-binding protein YP_718855.1 690316 R 205914 CDS YP_718856.1 113460789 4240132 691560..692201 1 NC_008309.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 692201 udk 4240132 udk Haemophilus somnus 129PT uridine kinase YP_718856.1 691560 D 205914 CDS YP_718857.1 113460790 4240133 692211..692795 1 NC_008309.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 692795 dcd 4240133 dcd Haemophilus somnus 129PT deoxycytidine triphosphate deaminase YP_718857.1 692211 D 205914 CDS YP_718858.1 113460791 4240134 692810..694003 1 NC_008309.1 hypothetical protein 694003 4240134 HS_0646 Haemophilus somnus 129PT hypothetical protein YP_718858.1 692810 D 205914 CDS YP_718859.1 113460792 4240135 694283..695284 1 NC_008309.1 sodium-dependent transporter 695284 4240135 HS_0647 Haemophilus somnus 129PT sodium-dependent transporter YP_718859.1 694283 D 205914 CDS YP_718860.1 113460793 4240136 695374..696018 1 NC_008309.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 696018 adk 4240136 adk Haemophilus somnus 129PT adenylate kinase YP_718860.1 695374 D 205914 CDS YP_718861.1 113460794 4240137 complement(696104..696691) 1 NC_008309.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 696691 grpE 4240137 grpE Haemophilus somnus 129PT heat shock protein GrpE YP_718861.1 696104 R 205914 CDS YP_718862.1 113460795 4240138 696834..697751 1 NC_008309.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 697751 ppnK 4240138 ppnK Haemophilus somnus 129PT inorganic polyphosphate/ATP-NAD kinase YP_718862.1 696834 D 205914 CDS YP_718863.1 113460796 4240139 697829..699508 1 NC_008309.1 DNA repair protein 699508 recN 4240139 recN Haemophilus somnus 129PT DNA repair protein YP_718863.1 697829 D 205914 CDS YP_718864.1 113460797 4240140 complement(699699..701009) 1 NC_008309.1 Na+/H+ antiporter 701009 nhaP 4240140 nhaP Haemophilus somnus 129PT Na+/H+ antiporter YP_718864.1 699699 R 205914 CDS YP_718865.1 113460798 4240141 complement(701338..701688) 1 NC_008309.1 translation inhibitor of mRNA 701688 4240141 HS_0653 Haemophilus somnus 129PT translation inhibitor of mRNA YP_718865.1 701338 R 205914 CDS YP_718866.1 113460799 4240142 701799..702521 1 NC_008309.1 hypothetical protein 702521 4240142 HS_0654 Haemophilus somnus 129PT hypothetical protein YP_718866.1 701799 D 205914 CDS YP_718867.1 113460800 4240143 702536..703435 1 NC_008309.1 SSU ribosomal protein S6P modification protein 703435 rimK 4240143 rimK Haemophilus somnus 129PT SSU ribosomal protein S6P modification protein YP_718867.1 702536 D 205914 CDS YP_718868.1 113460801 4240144 703554..704549 1 NC_008309.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase 704549 lpxK 4240144 lpxK Haemophilus somnus 129PT tetraacyldisaccharide 4'-kinase YP_718868.1 703554 D 205914 CDS YP_718869.1 113460802 4240145 704546..704743 1 NC_008309.1 hypothetical protein 704743 4240145 HS_0657 Haemophilus somnus 129PT hypothetical protein YP_718869.1 704546 D 205914 CDS YP_718870.1 113460803 4240146 704758..705528 1 NC_008309.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 705528 kdsB 4240146 kdsB Haemophilus somnus 129PT 3-deoxy-manno-octulosonate cytidylyltransferase YP_718870.1 704758 D 205914 CDS YP_718871.1 113460804 4240147 705521..707350 1 NC_008309.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 707350 uvrC 4240147 uvrC Haemophilus somnus 129PT excinuclease ABC subunit C YP_718871.1 705521 D 205914 CDS YP_718872.1 113460805 4240148 complement(707416..707802) 1 NC_008309.1 hypothetical protein 707802 4240148 HS_0660 Haemophilus somnus 129PT hypothetical protein YP_718872.1 707416 R 205914 CDS YP_718873.1 113460806 4240149 complement(707927..709906) 1 NC_008309.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II 709906 rnb 4240149 rnb Haemophilus somnus 129PT exoribonuclease II YP_718873.1 707927 R 205914 CDS YP_718874.1 113460807 4240150 complement(709971..710759) 1 NC_008309.1 enoyl-[acyl-carrier-protein] reductase [NADH] 710759 fabI 4240150 fabI Haemophilus somnus 129PT enoyl-[acyl-carrier-protein] reductase [NADH] YP_718874.1 709971 R 205914 CDS YP_718875.1 113460808 4240151 complement(710850..711605) 1 NC_008309.1 hypothetical protein 711605 4240151 HS_0663 Haemophilus somnus 129PT hypothetical protein YP_718875.1 710850 R 205914 CDS YP_718876.1 113460809 4240152 complement(711629..713659) 1 NC_008309.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase 713659 mnmC 4240152 mnmC Haemophilus somnus 129PT 5-methylaminomethyl-2-thiouridine methyltransferase YP_718876.1 711629 R 205914 CDS YP_718877.1 113460810 4240153 713814..715034 1 NC_008309.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 715034 fabB 4240153 fabB Haemophilus somnus 129PT 3-oxoacyl-(acyl carrier protein) synthase I YP_718877.1 713814 D 205914 CDS YP_718878.1 113460811 4240154 complement(715124..715564) 1 NC_008309.1 transposase 715564 4240154 HS_0666 Haemophilus somnus 129PT transposase YP_718878.1 715124 R 205914 CDS YP_718879.1 113460812 4240155 715676..716080 1 NC_008309.1 transposase 716080 4240155 HS_0667 Haemophilus somnus 129PT transposase YP_718879.1 715676 D 205914 CDS YP_718880.1 113460813 4240156 716028..716723 1 NC_008309.1 transposase 716723 4240156 HS_0668 Haemophilus somnus 129PT transposase YP_718880.1 716028 D 205914 CDS YP_718881.1 113460814 4240157 complement(716869..717360) 1 NC_008309.1 hypothetical protein 717360 4240157 HS_0669 Haemophilus somnus 129PT hypothetical protein YP_718881.1 716869 R 205914 CDS YP_718882.1 113460815 4240158 717522..717911 1 NC_008309.1 transcriptional regulator 717911 4240158 HS_0670 Haemophilus somnus 129PT transcriptional regulator YP_718882.1 717522 D 205914 CDS YP_718883.1 113460816 4240159 complement(718191..719315) 1 NC_008309.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 719315 tyrA 4240159 tyrA Haemophilus somnus 129PT bifunctional chorismate mutase/prephenate dehydrogenase YP_718883.1 718191 R 205914 CDS YP_718884.1 113460817 4240160 719516..720013 1 NC_008309.1 phosphoribosylaminoimidazole carboxylase 720013 purE 4240160 purE Haemophilus somnus 129PT phosphoribosylaminoimidazole carboxylase YP_718884.1 719516 D 205914 CDS YP_718885.1 113460818 4240161 complement(720224..721033) 1 NC_008309.1 regulates genes involved in glucitol utilization; DNA-binding transcriptional repressor SrlR 721033 srlR 4240161 srlR Haemophilus somnus 129PT DNA-binding transcriptional repressor SrlR YP_718885.1 720224 R 205914 CDS YP_718886.1 113460819 4240162 complement(721076..721723) 1 NC_008309.1 phosphatase 721723 4240162 HS_0674 Haemophilus somnus 129PT phosphatase YP_718886.1 721076 R 205914 CDS YP_718887.1 113460820 4240163 complement(721798..722166) 1 NC_008309.1 regulator for glucitol utilization; DNA-binding transcriptional activator GutM 722166 gutM 4240163 gutM Haemophilus somnus 129PT DNA-binding transcriptional activator GutM YP_718887.1 721798 R 205914 CDS YP_718888.1 113460821 4240164 complement(722221..723009) 1 NC_008309.1 catalyzes the conversion of sorbitol 6-phosphate into fructose 6-phosphate; sorbitol-6-phosphate dehydrogenase 723009 srlD 4240164 srlD Haemophilus somnus 129PT sorbitol-6-phosphate dehydrogenase YP_718888.1 722221 R 205914 CDS YP_718889.1 113460822 4240165 complement(723056..723421) 1 NC_008309.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system glucitol/sorbitol-specific transporter subunit IIA 723421 srlB 4240165 srlB Haemophilus somnus 129PT PTS system glucitol/sorbitol-specific transporter subunit IIA YP_718889.1 723056 R 205914 CDS YP_718890.1 113460823 4240166 complement(723482..724477) 1 NC_008309.1 PTS system, glucitol/sorbitol-specific IIBC component 724477 srlE 4240166 srlE Haemophilus somnus 129PT PTS system, glucitol/sorbitol-specific IIBC component YP_718890.1 723482 R 205914 CDS YP_718891.1 113460824 4240167 complement(724514..725068) 1 NC_008309.1 PTS system, glucitol/sorbitol-specific IIC2 component 725068 srlA 4240167 srlA Haemophilus somnus 129PT PTS system, glucitol/sorbitol-specific IIC2 component YP_718891.1 724514 R 205914 CDS YP_718892.1 113460825 4240168 complement(725395..726570) 1 NC_008309.1 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 726570 visC 4240168 visC Haemophilus somnus 129PT 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_718892.1 725395 R 205914 CDS YP_718893.1 113460826 4240169 complement(726597..727796) 1 NC_008309.1 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 727796 ubiH 4240169 ubiH Haemophilus somnus 129PT 2-octaprenyl-6-methoxyphenol hydroxylase / 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_718893.1 726597 R 205914 CDS YP_718894.1 113460827 4240170 complement(727824..729143) 1 NC_008309.1 aminopeptidase P 729143 pepP 4240170 pepP Haemophilus somnus 129PT aminopeptidase P YP_718894.1 727824 R 205914 CDS YP_718895.1 113460828 4240171 complement(729310..729867) 1 NC_008309.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 729867 4240171 HS_0683 Haemophilus somnus 129PT hypothetical protein YP_718895.1 729310 R 205914 CDS YP_718896.1 113460829 4240172 730010..730309 1 NC_008309.1 cell division protein ZapA 730309 4240172 HS_0684 Haemophilus somnus 129PT cell division protein ZapA YP_718896.1 730010 D 205914 CDS YP_718897.1 113460830 4240173 730605..731171 1 NC_008309.1 5-formyltetrahydrofolate cyclo-ligase 731171 4240173 HS_0685 Haemophilus somnus 129PT 5-formyltetrahydrofolate cyclo-ligase YP_718897.1 730605 D 205914 CDS YP_718898.1 113460831 4240174 complement(731160..731858) 1 NC_008309.1 aphA-like regulator 731858 aphA 4240174 aphA Haemophilus somnus 129PT aphA-like regulator YP_718898.1 731160 R 205914 CDS YP_718899.1 113460832 4240175 731926..732879 1 NC_008309.1 catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase 732879 serB 4240175 serB Haemophilus somnus 129PT phosphoserine phosphatase YP_718899.1 731926 D 205914 CDS YP_718900.1 113460833 4240176 732896..733387 1 NC_008309.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 733387 4240176 HS_0688 Haemophilus somnus 129PT nucleotide-binding protein YP_718900.1 732896 D 205914 CDS YP_718901.1 113460834 4240177 complement(733485..734237) 1 NC_008309.1 TonB protein 734237 tonB 4240177 tonB Haemophilus somnus 129PT TonB protein YP_718901.1 733485 R 205914 CDS YP_718902.1 113460835 4240178 complement(734237..734635) 1 NC_008309.1 biopolymer transport protein 734635 exbD 4240178 exbD Haemophilus somnus 129PT biopolymer transport protein YP_718902.1 734237 R 205914 CDS YP_718903.1 113460836 4240179 complement(734628..735083) 1 NC_008309.1 biopolymer transport protein 735083 exbB 4240179 exbB Haemophilus somnus 129PT biopolymer transport protein YP_718903.1 734628 R 205914 CDS YP_718904.1 113460837 4240180 complement(735477..736850) 1 NC_008309.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 736850 argH 4240180 argH Haemophilus somnus 129PT argininosuccinate lyase YP_718904.1 735477 R 205914 CDS YP_718905.1 113460838 4240181 737288..738154 1 NC_008309.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN 738154 rbn 4240181 rbn Haemophilus somnus 129PT ribonuclease BN YP_718905.1 737288 D 205914 CDS YP_718906.1 113460839 4240182 738151..738585 1 NC_008309.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 738585 dtd 4240182 dtd Haemophilus somnus 129PT D-tyrosyl-tRNA(Tyr) deacylase YP_718906.1 738151 D 205914 CDS YP_718907.1 113460840 4240183 complement(738633..739511) 1 NC_008309.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 739511 nanA 4240183 nanA Haemophilus somnus 129PT N-acetylneuraminate lyase YP_718907.1 738633 R 205914 CDS YP_718908.1 113460841 4240184 complement(739544..740413) 1 NC_008309.1 RpiR family transcriptional regulator 740413 4240184 HS_0696 Haemophilus somnus 129PT RpiR family transcriptional regulator YP_718908.1 739544 R 205914 CDS YP_718909.1 113460842 4240185 complement(740448..740918) 1 NC_008309.1 hypothetical protein 740918 4240185 HS_0697 Haemophilus somnus 129PT hypothetical protein YP_718909.1 740448 R 205914 CDS YP_718910.1 113460843 4240186 complement(740934..741812) 1 NC_008309.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 741812 nanK 4240186 nanK Haemophilus somnus 129PT N-acetylmannosamine kinase YP_718910.1 740934 R 205914 CDS YP_718911.1 113460844 4240187 complement(741829..742521) 1 NC_008309.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 742521 nanE 4240187 nanE Haemophilus somnus 129PT N-acetylmannosamine-6-phosphate 2-epimerase YP_718911.1 741829 R 205914 CDS YP_718912.1 113460845 4240188 complement(742567..743157) 1 NC_008309.1 N-acylneuraminate cytidylyltransferase 743157 neuA 4240188 neuA Haemophilus somnus 129PT N-acylneuraminate cytidylyltransferase YP_718912.1 742567 R 205914 CDS YP_718913.1 113460846 4240189 743326..744378 1 NC_008309.1 TRAP dicarboxylate transporter, periplasmic component 744378 dctP 4240189 dctP Haemophilus somnus 129PT TRAP dicarboxylate transporter, periplasmic component YP_718913.1 743326 D 205914 CDS YP_718914.1 113460847 4240190 744433..746298 1 NC_008309.1 TRAP dicarboxylate transporter, permease component 746298 dctQ 4240190 dctQ Haemophilus somnus 129PT TRAP dicarboxylate transporter, permease component YP_718914.1 744433 D 205914 CDS YP_718915.1 113460848 4240191 746649..748790 1 NC_008309.1 polynucleotide phosphorylase/polyadenylase 748790 pnp 4240191 pnp Haemophilus somnus 129PT polynucleotide phosphorylase/polyadenylase YP_718915.1 746649 D 205914 CDS YP_718916.1 113460849 4240192 749193..750998 1 NC_008309.1 ATP-dependent RNA helicase 750998 deaD 4240192 deaD Haemophilus somnus 129PT ATP-dependent RNA helicase YP_718916.1 749193 D 205914 CDS YP_718917.1 113460850 4240193 complement(751060..751278) 1 NC_008309.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 751278 infA 4240193 infA Haemophilus somnus 129PT translation initiation factor IF-1 YP_718917.1 751060 R 205914 CDS YP_718918.1 113460851 4240194 751489..752037 1 NC_008309.1 CMP-N-acetylneuraminic acid synthetase 752037 neuA 4240194 neuA Haemophilus somnus 129PT CMP-N-acetylneuraminic acid synthetase YP_718918.1 751489 D 205914 CDS YP_718919.1 113460852 4240195 752266..753285 1 NC_008309.1 dTDP-glucose 4,6-dehydratase 753285 rmlB 4240195 rmlB Haemophilus somnus 129PT dTDP-glucose 4,6-dehydratase YP_718919.1 752266 D 205914 CDS YP_718920.1 113460853 4240196 753459..755138 1 NC_008309.1 L-lactate permease 755138 lctP 4240196 lctP Haemophilus somnus 129PT L-lactate permease YP_718920.1 753459 D 205914 CDS YP_718921.1 113460854 4240197 755218..755949 1 NC_008309.1 hypothetical protein 755949 4240197 HS_0709 Haemophilus somnus 129PT hypothetical protein YP_718921.1 755218 D 205914 CDS YP_718922.1 113460855 4240198 755951..757363 1 NC_008309.1 hypothetical protein 757363 4240198 HS_0710 Haemophilus somnus 129PT hypothetical protein YP_718922.1 755951 D 205914 CDS YP_718923.1 113460856 4240199 757444..758061 1 NC_008309.1 hypothetical protein 758061 4240199 HS_0711 Haemophilus somnus 129PT hypothetical protein YP_718923.1 757444 D 205914 CDS YP_718924.1 113460857 4240200 complement(758136..759848) 1 NC_008309.1 two electrons are transferred from cytoplasmic NADPH to thioredoxin and then to the inner membrane protein DsbD which keeps the disulfide isomerase DsbC in a reduced state in the oxidizing periplasm; DsbC in turns rearranges incorrectly made disulfide bonds in the periplasm; thiol:disulfide interchange protein precursor 759848 dipZ 4240200 dipZ Haemophilus somnus 129PT thiol:disulfide interchange protein precursor YP_718924.1 758136 R 205914 CDS YP_718925.1 113460858 4240201 760056..760772 1 NC_008309.1 two-component response regulator 760772 arcA 4240201 arcA Haemophilus somnus 129PT two-component response regulator YP_718925.1 760056 D 205914 CDS YP_718926.1 113460859 4240202 complement(760954..761934) 1 NC_008309.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 761934 rluC 4240202 rluC Haemophilus somnus 129PT 23S rRNA pseudouridylate synthase C YP_718926.1 760954 R 205914 CDS YP_718927.1 113460860 4240203 762353..765181 1 NC_008309.1 ribonuclease E 765181 rne 4240203 rne Haemophilus somnus 129PT ribonuclease E YP_718927.1 762353 D 205914 CDS YP_718928.1 113460861 4240204 765404..765898 1 NC_008309.1 transposase 765898 4240204 HS_0716 Haemophilus somnus 129PT transposase YP_718928.1 765404 D 205914 CDS YP_718929.1 113460862 4240205 765882..766541 1 NC_008309.1 transposase 766541 4240205 HS_0717 Haemophilus somnus 129PT transposase YP_718929.1 765882 D 205914 CDS YP_718930.1 113460863 4240207 complement(767061..769916) 1 NC_008309.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 769916 polA 4240207 polA Haemophilus somnus 129PT DNA polymerase I YP_718930.1 767061 R 205914 CDS YP_718931.1 113460864 4240208 770124..772136 1 NC_008309.1 ATP-dependent DNA helicase Rep 772136 rep 4240208 rep Haemophilus somnus 129PT ATP-dependent DNA helicase Rep YP_718931.1 770124 D 205914 CDS YP_718932.1 113460865 4240213 complement(776536..777057) 1 NC_008309.1 heme binding protein 777057 hugZ 4240213 hugZ Haemophilus somnus 129PT heme binding protein YP_718932.1 776536 R 205914 CDS YP_718933.1 113460866 4240214 complement(777075..777569) 1 NC_008309.1 heme utilization protein HuvX 777569 hugX 4240214 hugX Haemophilus somnus 129PT heme utilization protein HuvX YP_718933.1 777075 R 205914 CDS YP_718934.1 113460867 4240215 777773..778402 1 NC_008309.1 Specifically methylates the uridine in position 2552 of 23S rRNA in the fully assembled 50S ribosomal subunit; 23S rRNA methyltransferase J 778402 rrmJ 4240215 rrmJ Haemophilus somnus 129PT 23S rRNA methyltransferase J YP_718934.1 777773 D 205914 CDS YP_718935.1 113460868 4240216 778524..780362 1 NC_008309.1 FtsH peptidase 780362 ftsH 4240216 ftsH Haemophilus somnus 129PT FtsH peptidase YP_718935.1 778524 D 205914 CDS YP_718936.1 113460869 4240217 780444..780668 1 NC_008309.1 hypothetical protein 780668 4240217 HS_0726 Haemophilus somnus 129PT hypothetical protein YP_718936.1 780444 D 205914 CDS YP_718937.1 113460870 4240218 780724..781380 1 NC_008309.1 lipopolysaccharide cholinephosphotransferase 781380 licD 4240218 licD Haemophilus somnus 129PT lipopolysaccharide cholinephosphotransferase YP_718937.1 780724 D 205914 CDS YP_718938.1 113460871 4240219 complement(782166..783110) 1 NC_008309.1 hemin receptor, outer membrane protein 783110 hemR 4240219 hemR Haemophilus somnus 129PT hemin receptor, outer membrane protein YP_718938.1 782166 R 205914 CDS YP_718939.1 113460872 4240220 783368..784195 1 NC_008309.1 dihydropteroate synthase 784195 folP 4240220 folP Haemophilus somnus 129PT dihydropteroate synthase YP_718939.1 783368 D 205914 CDS YP_718940.1 113460873 4240221 784286..785620 1 NC_008309.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 785620 glmM 4240221 glmM Haemophilus somnus 129PT phosphoglucosamine mutase YP_718940.1 784286 D 205914 CDS YP_718941.1 113460874 4240222 785556..786101 1 NC_008309.1 phosphohistidine phosphatase 786101 sixA 4240222 sixA Haemophilus somnus 129PT phosphohistidine phosphatase YP_718941.1 785556 D 205914 CDS YP_718942.1 113460875 4240223 786106..787065 1 NC_008309.1 permease 787065 4240223 HS_0732 Haemophilus somnus 129PT permease YP_718942.1 786106 D 205914 CDS YP_718943.1 113460876 4240224 787193..789115 1 NC_008309.1 ATP-dependent DNA helicase 789115 dinG 4240224 dinG Haemophilus somnus 129PT ATP-dependent DNA helicase YP_718943.1 787193 D 205914 CDS YP_718944.1 113460877 4240225 789120..789836 1 NC_008309.1 glycoprotease 789836 4240225 HS_0734 Haemophilus somnus 129PT glycoprotease YP_718944.1 789120 D 205914 CDS YP_718945.1 113460878 4240226 790062..791744 1 NC_008309.1 Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 791744 fadD 4240226 fadD Haemophilus somnus 129PT long-chain-fatty-acid--CoA ligase YP_718945.1 790062 D 205914 CDS YP_718946.1 113460879 4240227 791850..792995 1 NC_008309.1 ribonuclease D 792995 rnd 4240227 rnd Haemophilus somnus 129PT ribonuclease D YP_718946.1 791850 D 205914 CDS YP_718947.1 113460880 4240228 complement(793113..793700) 1 NC_008309.1 hypothetical protein 793700 4240228 HS_0737 Haemophilus somnus 129PT hypothetical protein YP_718947.1 793113 R 205914 CDS YP_718948.1 113460881 4240229 complement(793762..794346) 1 NC_008309.1 phosphoheptose isomerase 794346 4240229 HS_0738 Haemophilus somnus 129PT phosphoheptose isomerase YP_718948.1 793762 R 205914 CDS YP_718949.1 113460882 4240230 complement(794352..794714) 1 NC_008309.1 hypothetical protein 794714 4240230 HS_0739 Haemophilus somnus 129PT hypothetical protein YP_718949.1 794352 R 205914 CDS YP_718950.1 113460883 4240231 complement(794725..796539) 1 NC_008309.1 LppC precursor 796539 lppC 4240231 lppC Haemophilus somnus 129PT LppC precursor YP_718950.1 794725 R 205914 CDS YP_718951.1 113460884 4240232 796556..797401 1 NC_008309.1 methyltransferase 797401 4240232 HS_0741 Haemophilus somnus 129PT methyltransferase YP_718951.1 796556 D 205914 CDS YP_718952.1 113460885 4240233 797478..798101 1 NC_008309.1 translation factor SUA5 798101 4240233 HS_0742 Haemophilus somnus 129PT translation factor SUA5 YP_718952.1 797478 D 205914 CDS YP_718953.1 113460886 4240234 798231..799208 1 NC_008309.1 ribosomal large subunit pseudouridine synthase B 799208 rluB 4240234 rluB Haemophilus somnus 129PT ribosomal large subunit pseudouridine synthase B YP_718953.1 798231 D 205914 CDS YP_718954.1 113460887 4240235 complement(799472..799891) 1 NC_008309.1 hypothetical protein 799891 4240235 HS_0744 Haemophilus somnus 129PT hypothetical protein YP_718954.1 799472 R 205914 CDS YP_718955.1 113460888 4240236 complement(799904..800155) 1 NC_008309.1 hypothetical protein 800155 4240236 HS_0745 Haemophilus somnus 129PT hypothetical protein YP_718955.1 799904 R 205914 CDS YP_718956.1 113460889 4240237 complement(800661..802046) 1 NC_008309.1 outer membrane protein 802046 4240237 HS_0746 Haemophilus somnus 129PT outer membrane protein YP_718956.1 800661 R 205914 CDS YP_718957.1 113460890 4240238 complement(802177..802908) 1 NC_008309.1 deoxyribose operon repressor 802908 deoR 4240238 deoR Haemophilus somnus 129PT deoxyribose operon repressor YP_718957.1 802177 R 205914 CDS YP_718958.1 113460891 4240239 complement(802933..803607) 1 NC_008309.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 803607 deoC 4240239 deoC Haemophilus somnus 129PT deoxyribose-phosphate aldolase YP_718958.1 802933 R 205914 CDS YP_718959.1 113460892 4240240 803777..804697 1 NC_008309.1 ribokinase 804697 rbsK 4240240 rbsK Haemophilus somnus 129PT ribokinase YP_718959.1 803777 D 205914 CDS YP_718960.1 113460893 4240241 804726..806000 1 NC_008309.1 fucose permease 806000 fucP 4240241 fucP Haemophilus somnus 129PT fucose permease YP_718960.1 804726 D 205914 CDS YP_718961.1 113460894 4240242 806002..807015 1 NC_008309.1 hypothetical protein 807015 4240242 HS_0751 Haemophilus somnus 129PT hypothetical protein YP_718961.1 806002 D 205914 CDS YP_718962.1 113460895 4240243 807284..807712 1 NC_008309.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 807712 rplM 4240243 rplM Haemophilus somnus 129PT 50S ribosomal protein L13 YP_718962.1 807284 D 205914 CDS YP_718963.1 113460896 4240244 807729..808121 1 NC_008309.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 808121 rpsI 4240244 rpsI Haemophilus somnus 129PT 30S ribosomal protein S9 YP_718963.1 807729 D 205914 CDS YP_718964.1 113460897 4240245 808266..808904 1 NC_008309.1 stringent starvation protein A 808904 sspA 4240245 sspA Haemophilus somnus 129PT stringent starvation protein A YP_718964.1 808266 D 205914 CDS YP_718965.1 113460898 4240246 808912..809367 1 NC_008309.1 ClpXP protease specificity-enhancing factor 809367 sspB 4240246 sspB Haemophilus somnus 129PT ClpXP protease specificity-enhancing factor YP_718965.1 808912 D 205914 CDS YP_718966.1 113460899 4240247 complement(809440..810843) 1 NC_008309.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 810843 asnC 4240247 asnC Haemophilus somnus 129PT asparaginyl-tRNA synthetase YP_718966.1 809440 R 205914 CDS YP_718967.1 113460900 4240248 811046..812263 1 NC_008309.1 NagC-like transcriptional regulator 812263 mlc 4240248 mlc Haemophilus somnus 129PT NagC-like transcriptional regulator YP_718967.1 811046 D 205914 CDS YP_718968.1 113460901 4240249 complement(812399..813187) 1 NC_008309.1 IclR family transcriptional regulator 813187 4240249 HS_0758 Haemophilus somnus 129PT IclR family transcriptional regulator YP_718968.1 812399 R 205914 CDS YP_718969.1 113460902 4240250 813410..814408 1 NC_008309.1 NAD(P)H-dependent; catalyzes the reduction of 2,3-diketo-L-gulonate to 3-keto-L-gulonate; 2,3-diketo-L-gulonate reductase 814408 mdh 4240250 mdh Haemophilus somnus 129PT 2,3-diketo-L-gulonate reductase YP_718969.1 813410 D 205914 CDS YP_718970.1 113460903 4240251 814506..814988 1 NC_008309.1 tripartite ATP-independent periplasmic transporter DctQ 814988 4240251 HS_0760 Haemophilus somnus 129PT tripartite ATP-independent periplasmic transporter DctQ YP_718970.1 814506 D 205914 CDS YP_718971.1 113460904 4240252 814985..816265 1 NC_008309.1 DedA family integral membrane protein 816265 4240252 HS_0761 Haemophilus somnus 129PT DedA family integral membrane protein YP_718971.1 814985 D 205914 CDS YP_718972.1 113460905 4240253 816285..817271 1 NC_008309.1 C4-dicarboxylate transport system, periplasmic component 817271 4240253 HS_0762 Haemophilus somnus 129PT C4-dicarboxylate transport system, periplasmic component YP_718972.1 816285 D 205914 CDS YP_718973.1 113460906 4240254 817351..818868 1 NC_008309.1 ribose ABC transporter ATP-binding protein 818868 rbsA 4240254 rbsA Haemophilus somnus 129PT ribose ABC transporter ATP-binding protein YP_718973.1 817351 D 205914 CDS YP_718974.1 113460907 4240255 818911..819960 1 NC_008309.1 ribose ABC transporter permease 819960 rbsC 4240255 rbsC Haemophilus somnus 129PT ribose ABC transporter permease YP_718974.1 818911 D 205914 CDS YP_718975.1 113460908 4240256 820001..821110 1 NC_008309.1 ABC-type sugar-binding periplasmic protein 821110 rbsB 4240256 rbsB Haemophilus somnus 129PT ABC-type sugar-binding periplasmic protein YP_718975.1 820001 D 205914 CDS YP_718976.1 113460909 4240257 821173..822060 1 NC_008309.1 gluconolactonase 822060 4240257 HS_0766 Haemophilus somnus 129PT gluconolactonase YP_718976.1 821173 D 205914 CDS YP_718977.1 113460910 4240258 complement(822127..823065) 1 NC_008309.1 sugar ABC transporter periplasmic sugar-binding protein 823065 4240258 HS_0767 Haemophilus somnus 129PT sugar ABC transporter periplasmic sugar-binding protein YP_718977.1 822127 R 205914 CDS YP_718978.1 113460911 4240259 823280..824770 1 NC_008309.1 ribose ABC transporter ATP-binding protein 824770 rbsA 4240259 rbsA Haemophilus somnus 129PT ribose ABC transporter ATP-binding protein YP_718978.1 823280 D 205914 CDS YP_718979.1 113460912 4240260 824779..825807 1 NC_008309.1 ribose transport system permease 825807 rbsC 4240260 rbsC Haemophilus somnus 129PT ribose transport system permease YP_718979.1 824779 D 205914 CDS YP_718980.1 113460913 4240261 825909..827363 1 NC_008309.1 L-xylulose kinase 827363 sgbK 4240261 sgbK Haemophilus somnus 129PT L-xylulose kinase YP_718980.1 825909 D 205914 CDS YP_718981.1 113460914 4240262 827374..828021 1 NC_008309.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 828021 ulaD 4240262 ulaD Haemophilus somnus 129PT 3-keto-L-gulonate-6-phosphate decarboxylase YP_718981.1 827374 D 205914 CDS YP_718982.1 113460915 4240263 828038..828910 1 NC_008309.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; L-xylulose 5-phosphate 3-epimerase 828910 sgbU 4240263 sgbU Haemophilus somnus 129PT L-xylulose 5-phosphate 3-epimerase YP_718982.1 828038 D 205914 CDS YP_718983.1 113460916 4240264 828904..829599 1 NC_008309.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 829599 sgbE 4240264 sgbE Haemophilus somnus 129PT L-ribulose-5-phosphate 4-epimerase YP_718983.1 828904 D 205914 CDS YP_718984.1 113460917 4240265 complement(829642..830463) 1 NC_008309.1 HAD superfamily hydrolase 830463 4240265 HS_0774 Haemophilus somnus 129PT HAD superfamily hydrolase YP_718984.1 829642 R 205914 CDS YP_718985.1 113460918 4240266 830702..831658 1 NC_008309.1 lysophospholipase L2 831658 pldB 4240266 pldB Haemophilus somnus 129PT lysophospholipase L2 YP_718985.1 830702 D 205914 CDS YP_718986.1 113460919 4240267 complement(831636..832019) 1 NC_008309.1 camphor resistance protein CrcB 832019 crcB 4240267 crcB Haemophilus somnus 129PT camphor resistance protein CrcB YP_718986.1 831636 R 205914 CDS YP_718987.1 113460920 4240268 complement(832039..832857) 1 NC_008309.1 HAD superfamily hydrolase 832857 4240268 HS_0777 Haemophilus somnus 129PT HAD superfamily hydrolase YP_718987.1 832039 R 205914 CDS YP_718988.1 113460921 4240269 complement(832895..833557) 1 NC_008309.1 NAD(P)H nitroreductase 833557 frxA 4240269 frxA Haemophilus somnus 129PT NAD(P)H nitroreductase YP_718988.1 832895 R 205914 CDS YP_718989.1 113460922 4240270 complement(833578..833874) 1 NC_008309.1 hypothetical protein 833874 4240270 HS_0779 Haemophilus somnus 129PT hypothetical protein YP_718989.1 833578 R 205914 CDS YP_718990.1 113460923 4240271 complement(833899..835110) 1 NC_008309.1 tyrosine-specific transport protein 835110 tyrP 4240271 tyrP Haemophilus somnus 129PT tyrosine-specific transport protein YP_718990.1 833899 R 205914 CDS YP_718991.1 113460924 4240272 complement(835204..836253) 1 NC_008309.1 iron(III) ABC transporter ATP-binding protein 836253 fbpC 4240272 fbpC Haemophilus somnus 129PT iron(III) ABC transporter ATP-binding protein YP_718991.1 835204 R 205914 CDS YP_718992.1 113460925 4240273 complement(836253..837920) 1 NC_008309.1 iron-uptake permease inner membrane protein 837920 fbpB 4240273 fbpB Haemophilus somnus 129PT iron-uptake permease inner membrane protein YP_718992.1 836253 R 205914 CDS YP_718993.1 113460926 4240274 complement(838077..839093) 1 NC_008309.1 periplasmic iron-binding protein 839093 fbpA 4240274 fbpA Haemophilus somnus 129PT periplasmic iron-binding protein YP_718993.1 838077 R 205914 CDS YP_718994.1 113460927 4240275 complement(839284..840975) 1 NC_008309.1 component of the membrane-bound D-lactate oxidase, FAD-binding, NADH independent; D-lactate dehydrogenase 840975 dld 4240275 dld Haemophilus somnus 129PT D-lactate dehydrogenase YP_718994.1 839284 R 205914 CDS YP_718995.1 113460928 4240276 841187..842014 1 NC_008309.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 842014 dapD 4240276 dapD Haemophilus somnus 129PT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_718995.1 841187 D 205914 CDS YP_718996.1 113460929 4240277 complement(842072..842908) 1 NC_008309.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 842908 purU 4240277 purU Haemophilus somnus 129PT formyltetrahydrofolate deformylase YP_718996.1 842072 R 205914 CDS YP_718997.1 113460930 4240278 complement(842970..843374) 1 NC_008309.1 DNA-binding protein H-NS 843374 hns 4240278 hns Haemophilus somnus 129PT DNA-binding protein H-NS YP_718997.1 842970 R 205914 CDS YP_718998.1 113460931 4240279 843815..845362 1 NC_008309.1 Na(+)/H(+) antiporter 845362 4240279 HS_0788 Haemophilus somnus 129PT Na(+)/H(+) antiporter YP_718998.1 843815 D 205914 CDS YP_718999.1 113460932 4240280 845481..846497 1 NC_008309.1 UDP-galactose 4-epimerase 846497 galE 4240280 galE Haemophilus somnus 129PT UDP-galactose 4-epimerase YP_718999.1 845481 D 205914 CDS YP_719000.1 113460933 4240281 847130..858892 1 NC_008309.1 large adhesin 858892 4240281 HS_0790 Haemophilus somnus 129PT large adhesin YP_719000.1 847130 D 205914 CDS YP_719001.1 113460934 4240282 complement(858994..861033) 1 NC_008309.1 oligopeptidase A 861033 prlC 4240282 prlC Haemophilus somnus 129PT oligopeptidase A YP_719001.1 858994 R 205914 CDS YP_719002.1 113460935 4240283 861320..862510 1 NC_008309.1 aminotransferase 862510 4240283 HS_0792 Haemophilus somnus 129PT aminotransferase YP_719002.1 861320 D 205914 CDS YP_719003.1 113460936 4240284 862500..863909 1 NC_008309.1 Na(+)/H(+) antiporter 863909 nhaC 4240284 nhaC Haemophilus somnus 129PT Na(+)/H(+) antiporter YP_719003.1 862500 D 205914 CDS YP_719004.1 113460937 4240285 864058..865221 1 NC_008309.1 AraC family transcriptional regulator 865221 xylR 4240285 xylR Haemophilus somnus 129PT AraC family transcriptional regulator YP_719004.1 864058 D 205914 CDS YP_719005.1 113460938 4240286 865329..865691 1 NC_008309.1 hypothetical protein 865691 4240286 HS_0795 Haemophilus somnus 129PT hypothetical protein YP_719005.1 865329 D 205914 CDS YP_719006.1 113460939 4240287 865741..867312 1 NC_008309.1 oligopeptide transporter, periplasmic-binding protein 867312 4240287 HS_0796 Haemophilus somnus 129PT oligopeptide transporter, periplasmic-binding protein YP_719006.1 865741 D 205914 CDS YP_719007.1 113460940 4240288 867381..869315 1 NC_008309.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase component 869315 uup-A 4240288 uup-A Haemophilus somnus 129PT ABC transporter ATPase component YP_719007.1 867381 D 205914 CDS YP_719008.1 113460941 4240289 869335..869568 1 NC_008309.1 hypothetical protein 869568 4240289 HS_0798 Haemophilus somnus 129PT hypothetical protein YP_719008.1 869335 D 205914 CDS YP_719009.1 113460942 4240290 complement(869528..870514) 1 NC_008309.1 dihydroorotate oxidase B, catalytic subunit 870514 4240290 HS_0799 Haemophilus somnus 129PT dihydroorotate oxidase B, catalytic subunit YP_719009.1 869528 R 205914 CDS YP_719010.1 113460943 4240291 complement(870879..872108) 1 NC_008309.1 tryptophan permease 872108 tnaB 4240291 tnaB Haemophilus somnus 129PT tryptophan permease YP_719010.1 870879 R 205914 CDS YP_719011.1 113460944 4240292 complement(872174..873589) 1 NC_008309.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 873589 tnaA 4240292 tnaA Haemophilus somnus 129PT tryptophanase YP_719011.1 872174 R 205914 CDS YP_719012.1 113460945 4240293 complement(873911..876049) 1 NC_008309.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 876049 pta 4240293 pta Haemophilus somnus 129PT phosphate acetyltransferase YP_719012.1 873911 R 205914 CDS YP_719013.1 113460946 4240294 complement(876116..877312) 1 NC_008309.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 877312 ackA 4240294 ackA Haemophilus somnus 129PT acetate kinase YP_719013.1 876116 R 205914 CDS YP_719014.1 113460947 4240295 877544..877978 1 NC_008309.1 hypothetical protein 877978 4240295 HS_0804 Haemophilus somnus 129PT hypothetical protein YP_719014.1 877544 D 205914 CDS YP_719015.1 113460948 4240296 878091..878369 1 NC_008309.1 hypothetical protein 878369 4240296 HS_0805 Haemophilus somnus 129PT hypothetical protein YP_719015.1 878091 D 205914 CDS YP_719016.1 113460949 4240297 complement(878467..880872) 1 NC_008309.1 trimethylamine-N-oxide reductase 2, biotin sulfoxide reductase 880872 torZ 4240297 torZ Haemophilus somnus 129PT trimethylamine-N-oxide reductase 2, biotin sulfoxide reductase YP_719016.1 878467 R 205914 CDS YP_719017.1 113460950 4240298 complement(881203..882339) 1 NC_008309.1 cytochrome c-type protein 882339 torY 4240298 torY Haemophilus somnus 129PT cytochrome c-type protein YP_719017.1 881203 R 205914 CDS YP_719018.1 113460951 4240299 complement(882511..883236) 1 NC_008309.1 SAM-dependent methyltransferase 883236 yafS 4240299 yafS Haemophilus somnus 129PT SAM-dependent methyltransferase YP_719018.1 882511 R 205914 CDS YP_719019.1 113460952 4240300 883270..883971 1 NC_008309.1 hydroxyacylglutathione hydrolase 883971 gloB 4240300 gloB Haemophilus somnus 129PT hydroxyacylglutathione hydrolase YP_719019.1 883270 D 205914 CDS YP_719020.1 113460953 4240301 884013..885392 1 NC_008309.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 885392 hemA 4240301 hemA Haemophilus somnus 129PT glutamyl-tRNA reductase YP_719020.1 884013 D 205914 CDS YP_719021.1 113460954 4240302 complement(885404..886681) 1 NC_008309.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 886681 norM 4240302 norM Haemophilus somnus 129PT multidrug efflux protein YP_719021.1 885404 R 205914 CDS YP_719022.1 113460955 4240303 886852..887460 1 NC_008309.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 887460 ribE 4240303 ribE Haemophilus somnus 129PT riboflavin synthase subunit alpha YP_719022.1 886852 D 205914 CDS YP_719023.1 113460956 4240304 complement(887513..888853) 1 NC_008309.1 recombination factor protein RarA 888853 4240304 HS_0813 Haemophilus somnus 129PT recombination factor protein RarA YP_719023.1 887513 R 205914 CDS YP_719024.1 113460957 4240305 complement(888919..889533) 1 NC_008309.1 participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 889533 lolA 4240305 lolA Haemophilus somnus 129PT outer-membrane lipoprotein carrier protein YP_719024.1 888919 R 205914 CDS YP_719025.1 113460958 4240306 889755..890168 1 NC_008309.1 hypothetical protein 890168 4240306 HS_0815 Haemophilus somnus 129PT hypothetical protein YP_719025.1 889755 D 205914 CDS YP_719026.1 113460959 4240307 890297..891685 1 NC_008309.1 periplasmic serine protease 891685 htrA 4240307 htrA Haemophilus somnus 129PT periplasmic serine protease YP_719026.1 890297 D 205914 CDS YP_719027.1 113460960 4240308 complement(891770..892330) 1 NC_008309.1 low molecular weight protein-tyrosine-phosphatase 892330 yfkJ 4240308 yfkJ Haemophilus somnus 129PT low molecular weight protein-tyrosine-phosphatase YP_719027.1 891770 R 205914 CDS YP_719028.1 113460961 4240309 892379..893101 1 NC_008309.1 hypothetical protein 893101 4240309 HS_0818 Haemophilus somnus 129PT hypothetical protein YP_719028.1 892379 D 205914 CDS YP_719029.1 113460962 4240311 893535..893996 1 NC_008309.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 893996 4240311 HS_0819 Haemophilus somnus 129PT hypothetical protein YP_719029.1 893535 D 205914 CDS YP_719030.1 113460963 4240312 894011..895492 1 NC_008309.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 895492 nusA 4240312 nusA Haemophilus somnus 129PT transcription elongation factor NusA YP_719030.1 894011 D 205914 CDS YP_719031.1 113460964 4240313 895513..898008 1 NC_008309.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 898008 infB 4240313 infB Haemophilus somnus 129PT translation initiation factor IF-2 YP_719031.1 895513 D 205914 CDS YP_719032.1 113460965 4240314 898262..898642 1 NC_008309.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 898642 rbfA 4240314 rbfA Haemophilus somnus 129PT ribosome-binding factor A YP_719032.1 898262 D 205914 CDS YP_719033.1 113460966 4240315 898655..899581 1 NC_008309.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 899581 truB 4240315 truB Haemophilus somnus 129PT tRNA pseudouridine synthase B YP_719033.1 898655 D 205914 CDS YP_719034.1 113460967 4240316 complement(899629..901902) 1 NC_008309.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 901902 metE 4240316 metE Haemophilus somnus 129PT 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase YP_719034.1 899629 R 205914 CDS YP_719035.1 113460968 4240317 complement(902107..904371) 1 NC_008309.1 penicillin-binding protein 1B 904371 ponB 4240317 ponB Haemophilus somnus 129PT penicillin-binding protein 1B YP_719035.1 902107 R 205914 CDS YP_719036.1 113460969 4240318 complement(904443..904805) 1 NC_008309.1 hypothetical protein 904805 4240318 HS_0826 Haemophilus somnus 129PT hypothetical protein YP_719036.1 904443 R 205914 CDS YP_719037.1 113460970 4240319 complement(904809..905150) 1 NC_008309.1 HesB family protein 905150 4240319 HS_0827 Haemophilus somnus 129PT HesB family protein YP_719037.1 904809 R 205914 CDS YP_719038.1 113460971 4240320 905284..906087 1 NC_008309.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 906087 map 4240320 map Haemophilus somnus 129PT methionine aminopeptidase YP_719038.1 905284 D 205914 CDS YP_719039.1 113460972 4240321 906145..908730 1 NC_008309.1 PII uridylyl-transferase 908730 glnD 4240321 glnD Haemophilus somnus 129PT PII uridylyl-transferase YP_719039.1 906145 D 205914 CDS YP_719040.1 113460973 4240322 908809..909282 1 NC_008309.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 909282 ribH 4240322 ribH Haemophilus somnus 129PT 6,7-dimethyl-8-ribityllumazine synthase YP_719040.1 908809 D 205914 CDS YP_719041.1 113460974 4240323 909291..909725 1 NC_008309.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 909725 nusB 4240323 nusB Haemophilus somnus 129PT transcription antitermination protein NusB YP_719041.1 909291 D 205914 CDS YP_719042.1 113460975 4240324 909740..910747 1 NC_008309.1 thiamine-monophosphate kinase 910747 thiL 4240324 thiL Haemophilus somnus 129PT thiamine-monophosphate kinase YP_719042.1 909740 D 205914 CDS YP_719043.1 113460976 4240325 910757..911242 1 NC_008309.1 phosphatidylglycerophosphatase 911242 pgpA 4240325 pgpA Haemophilus somnus 129PT phosphatidylglycerophosphatase YP_719043.1 910757 D 205914 CDS YP_719044.1 113460977 4240326 911255..911884 1 NC_008309.1 lysine exporter protein 911884 4240326 HS_0834 Haemophilus somnus 129PT lysine exporter protein YP_719044.1 911255 D 205914 CDS YP_719045.1 113460978 4240327 911904..912716 1 NC_008309.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 912716 dapB 4240327 dapB Haemophilus somnus 129PT dihydrodipicolinate reductase YP_719045.1 911904 D 205914 CDS YP_719046.1 113460979 4240328 912874..913677 1 NC_008309.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 913677 xthA 4240328 xthA Haemophilus somnus 129PT exonuclease III YP_719046.1 912874 D 205914 CDS YP_719047.1 113460980 4240329 913616..914467 1 NC_008309.1 hypothetical protein 914467 4240329 HS_0837 Haemophilus somnus 129PT hypothetical protein YP_719047.1 913616 D 205914 CDS YP_719048.1 113460981 4240330 complement(914522..915712) 1 NC_008309.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 915712 aspC 4240330 aspC Haemophilus somnus 129PT aromatic amino acid aminotransferase YP_719048.1 914522 R 205914 CDS YP_719049.1 113460982 4240331 complement(915857..916945) 1 NC_008309.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 916945 purK 4240331 purK Haemophilus somnus 129PT phosphoribosylaminoimidazole carboxylase ATPase subunit YP_719049.1 915857 R 205914 CDS YP_719050.1 113460983 4240332 complement(916988..917680) 1 NC_008309.1 carbonic anhydrase 917680 cah 4240332 cah Haemophilus somnus 129PT carbonic anhydrase YP_719050.1 916988 R 205914 CDS YP_719051.1 113460984 4240333 917847..918890 1 NC_008309.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 918890 sohB 4240333 sohB Haemophilus somnus 129PT periplasmic protease YP_719051.1 917847 D 205914 CDS YP_719052.1 113460985 4240334 919074..919895 1 NC_008309.1 outer membrane protein 919895 4240334 HS_0842 Haemophilus somnus 129PT outer membrane protein YP_719052.1 919074 D 205914 CDS YP_719053.1 113460986 4240335 complement(919946..920950) 1 NC_008309.1 fructosamine kinase 920950 4240335 HS_0843 Haemophilus somnus 129PT fructosamine kinase YP_719053.1 919946 R 205914 CDS YP_719054.1 113460987 4240336 921208..923136 1 NC_008309.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 923136 thrS 4240336 thrS Haemophilus somnus 129PT threonyl-tRNA synthetase YP_719054.1 921208 D 205914 CDS YP_719055.1 113460988 4240337 complement(923192..924040) 1 NC_008309.1 hypothetical protein 924040 4240337 HS_0845 Haemophilus somnus 129PT hypothetical protein YP_719055.1 923192 R 205914 CDS YP_719056.1 113460989 4240338 924377..925687 1 NC_008309.1 xanthine/uracil family permease 925687 4240338 HS_0846 Haemophilus somnus 129PT xanthine/uracil family permease YP_719056.1 924377 D 205914 CDS YP_719057.1 113460990 4240339 925768..926304 1 NC_008309.1 hypothetical protein 926304 4240339 HS_0847 Haemophilus somnus 129PT hypothetical protein YP_719057.1 925768 D 205914 CDS YP_719058.1 113460991 4240340 926305..927234 1 NC_008309.1 multidrug ABC transporter ATP-binding protein 927234 4240340 HS_0848 Haemophilus somnus 129PT multidrug ABC transporter ATP-binding protein YP_719058.1 926305 D 205914 CDS YP_719059.1 113460992 4240341 927234..927998 1 NC_008309.1 multidrug ABC transporter permease 927998 4240341 HS_0849 Haemophilus somnus 129PT multidrug ABC transporter permease YP_719059.1 927234 D 205914 CDS YP_719060.1 113460993 4240342 complement(928108..929490) 1 NC_008309.1 hypothetical protein 929490 4240342 HS_0850 Haemophilus somnus 129PT hypothetical protein YP_719060.1 928108 R 205914 CDS YP_719061.1 113460994 4240343 complement(929503..930342) 1 NC_008309.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 930342 queF 4240343 queF Haemophilus somnus 129PT 7-cyano-7-deazaguanine reductase YP_719061.1 929503 R 205914 CDS YP_719062.1 113460995 4240344 complement(930358..931146) 1 NC_008309.1 hypothetical protein 931146 4240344 HS_0852 Haemophilus somnus 129PT hypothetical protein YP_719062.1 930358 R 205914 CDS YP_719063.1 113460996 4240345 931232..931546 1 NC_008309.1 hypothetical protein 931546 4240345 HS_0853 Haemophilus somnus 129PT hypothetical protein YP_719063.1 931232 D 205914 CDS YP_719064.1 113460997 4240346 931549..932253 1 NC_008309.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C 932253 truC 4240346 truC Haemophilus somnus 129PT tRNA pseudouridine synthase C YP_719064.1 931549 D 205914 CDS YP_719065.1 113460998 4240347 932247..932447 1 NC_008309.1 hypothetical protein 932447 4240347 HS_0855 Haemophilus somnus 129PT hypothetical protein YP_719065.1 932247 D 205914 CDS YP_719066.1 113460999 4240348 932597..932806 1 NC_008309.1 cold-shock DNA-binding protein family protein 932806 cspD 4240348 cspD Haemophilus somnus 129PT cold-shock DNA-binding protein family protein YP_719066.1 932597 D 205914 CDS YP_719067.1 113461000 4240349 complement(932878..933324) 1 NC_008309.1 hypothetical protein 933324 4240349 HS_0857 Haemophilus somnus 129PT hypothetical protein YP_719067.1 932878 R 205914 CDS YP_719068.1 113461001 4240350 933476..935287 1 NC_008309.1 ATP-dependent Lon protease 935287 4240350 HS_0858 Haemophilus somnus 129PT ATP-dependent Lon protease YP_719068.1 933476 D 205914 CDS YP_719069.1 113461002 4240351 935382..936371 1 NC_008309.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 936371 pheS 4240351 pheS Haemophilus somnus 129PT phenylalanyl-tRNA synthetase subunit alpha YP_719069.1 935382 D 205914 CDS YP_719070.1 113461003 4240352 936386..936865 1 NC_008309.1 hypothetical protein 936865 4240352 HS_0860 Haemophilus somnus 129PT hypothetical protein YP_719070.1 936386 D 205914 CDS YP_719071.1 113461004 4240353 936880..939267 1 NC_008309.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 939267 pheT 4240353 pheT Haemophilus somnus 129PT phenylalanyl-tRNA synthetase subunit beta YP_719071.1 936880 D 205914 CDS YP_719072.1 113461005 4240354 939270..939563 1 NC_008309.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 939563 ihfA 4240354 ihfA Haemophilus somnus 129PT integration host factor subunit alpha YP_719072.1 939270 D 205914 CDS YP_719073.1 113461006 4240355 complement(939707..940651) 1 NC_008309.1 TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 940651 4240355 HS_0863 Haemophilus somnus 129PT C32 tRNA thiolase YP_719073.1 939707 R 205914 CDS YP_719074.1 113461007 4240356 940859..942181 1 NC_008309.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 942181 kicB 4240356 kicB Haemophilus somnus 129PT condesin subunit F YP_719074.1 940859 D 205914 CDS YP_719075.1 113461008 4240357 942248..942991 1 NC_008309.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 942991 kicA 4240357 kicA Haemophilus somnus 129PT condesin subunit E YP_719075.1 942248 D 205914 CDS YP_719076.1 113461009 4240358 943114..947520 1 NC_008309.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 947520 mukB 4240358 mukB Haemophilus somnus 129PT cell division protein MukB YP_719076.1 943114 D 205914 CDS YP_719077.1 113461010 4240359 947677..948531 1 NC_008309.1 permease 948531 4240359 HS_0867 Haemophilus somnus 129PT permease YP_719077.1 947677 D 205914 CDS YP_719078.1 113461011 4240360 948627..948920 1 NC_008309.1 hypothetical protein 948920 4240360 HS_0868 Haemophilus somnus 129PT hypothetical protein YP_719078.1 948627 D 205914 CDS YP_719079.1 113461012 4240361 949454..949846 1 NC_008309.1 hypothetical protein 949846 4240361 HS_0869 Haemophilus somnus 129PT hypothetical protein YP_719079.1 949454 D 205914 CDS YP_719080.1 113461013 4240362 949941..950996 1 NC_008309.1 hypothetical protein 950996 4240362 HS_0870 Haemophilus somnus 129PT hypothetical protein YP_719080.1 949941 D 205914 CDS YP_719081.1 113461014 4240363 951085..951342 1 NC_008309.1 hypothetical protein 951342 4240363 HS_0871 Haemophilus somnus 129PT hypothetical protein YP_719081.1 951085 D 205914 CDS YP_719082.1 113461015 4240364 951474..952934 1 NC_008309.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 952934 sbcB 4240364 sbcB Haemophilus somnus 129PT exonuclease I YP_719082.1 951474 D 205914 CDS YP_719083.1 113461016 4240365 complement(953614..953901) 1 NC_008309.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 953901 rplY 4240365 rplY Haemophilus somnus 129PT 50S ribosomal protein L25 YP_719083.1 953614 R 205914 CDS YP_719084.1 113461017 4240366 954122..954727 1 NC_008309.1 hypothetical protein 954727 4240366 HS_0874 Haemophilus somnus 129PT hypothetical protein YP_719084.1 954122 D 205914 CDS YP_719085.1 113461018 4240367 complement(954900..955253) 1 NC_008309.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 955253 rplT 4240367 rplT Haemophilus somnus 129PT 50S ribosomal protein L20 YP_719085.1 954900 R 205914 CDS YP_719086.1 113461019 4240368 complement(955324..955521) 1 NC_008309.1 50S ribosomal protein L35 955521 rpmI 4240368 rpmI Haemophilus somnus 129PT 50S ribosomal protein L35 YP_719086.1 955324 R 205914 CDS YP_719087.1 113461020 4240369 complement(955620..956099) 1 NC_008309.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits; translation initiation factor IF-3 956099 infC 4240369 infC Haemophilus somnus 129PT translation initiation factor IF-3 YP_719087.1 955620 R 205914 CDS YP_719088.1 113461021 4240370 956523..957296 1 NC_008309.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 957296 fnr 4240370 fnr Haemophilus somnus 129PT fumarate/nitrate reduction transcriptional regulator YP_719088.1 956523 D 205914 CDS YP_719089.1 113461022 4240371 957447..958370 1 NC_008309.1 with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 958370 uspE 4240371 uspE Haemophilus somnus 129PT universal stress protein UspE YP_719089.1 957447 D 205914 CDS YP_719090.1 113461023 4240372 complement(958415..959746) 1 NC_008309.1 folylpolyglutamate synthase 959746 folC 4240372 folC Haemophilus somnus 129PT folylpolyglutamate synthase YP_719090.1 958415 R 205914 CDS YP_719091.1 113461024 4240373 complement(959736..960635) 1 NC_008309.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 960635 accD 4240373 accD Haemophilus somnus 129PT acetyl-CoA carboxylase subunit beta YP_719091.1 959736 R 205914 CDS YP_719092.1 113461025 4240374 complement(960720..961664) 1 NC_008309.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 961664 usg 4240374 usg Haemophilus somnus 129PT aspartate-semialdehyde dehydrogenase YP_719092.1 960720 R 205914 CDS YP_719093.1 113461026 4240375 complement(961769..962578) 1 NC_008309.1 TrpH protein 962578 trpH 4240375 trpH Haemophilus somnus 129PT TrpH protein YP_719093.1 961769 R 205914 CDS YP_719094.1 113461027 4240376 complement(962676..965285) 1 NC_008309.1 aminopeptidase N 965285 pepN 4240376 pepN Haemophilus somnus 129PT aminopeptidase N YP_719094.1 962676 R 205914 CDS YP_719095.1 113461028 4240377 complement(965394..967853) 1 NC_008309.1 glycogen phosphorylase 967853 glgP 4240377 glgP Haemophilus somnus 129PT glycogen phosphorylase YP_719095.1 965394 R 205914 CDS YP_719096.1 113461029 4240378 complement(967975..969414) 1 NC_008309.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 969414 glgA 4240378 glgA Haemophilus somnus 129PT glycogen synthase YP_719096.1 967975 R 205914 CDS YP_719097.1 113461030 4240379 complement(969484..970794) 1 NC_008309.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 970794 glgC 4240379 glgC Haemophilus somnus 129PT glucose-1-phosphate adenylyltransferase YP_719097.1 969484 R 205914 CDS YP_719098.1 113461031 4240380 complement(970853..972835) 1 NC_008309.1 glycogen operon protein 972835 glgX 4240380 glgX Haemophilus somnus 129PT glycogen operon protein YP_719098.1 970853 R 205914 CDS YP_719099.1 113461032 4240381 complement(972861..975284) 1 NC_008309.1 1,4-alpha-glucan branching enzyme 975284 glgB 4240381 glgB Haemophilus somnus 129PT 1,4-alpha-glucan branching enzyme YP_719099.1 972861 R 205914 CDS YP_719100.1 113461033 4240382 complement(975296..977395) 1 NC_008309.1 4-alpha-glucanotransferase 977395 malQ 4240382 malQ Haemophilus somnus 129PT 4-alpha-glucanotransferase YP_719100.1 975296 R 205914 CDS YP_719101.1 113461034 4240383 complement(977505..977972) 1 NC_008309.1 hypothetical protein 977972 4240383 HS_0891 Haemophilus somnus 129PT hypothetical protein YP_719101.1 977505 R 205914 CDS YP_719102.1 113461035 4240384 complement(978062..980845) 1 NC_008309.1 zinc protease 980845 pqqL 4240384 pqqL Haemophilus somnus 129PT zinc protease YP_719102.1 978062 R 205914 CDS YP_719103.1 113461036 4240385 complement(980845..981645) 1 NC_008309.1 hypothetical protein 981645 4240385 HS_0893 Haemophilus somnus 129PT hypothetical protein YP_719103.1 980845 R 205914 CDS YP_719104.1 113461037 4240386 complement(981768..983234) 1 NC_008309.1 hypothetical protein 983234 4240386 HS_0894 Haemophilus somnus 129PT hypothetical protein YP_719104.1 981768 R 205914 CDS YP_719105.1 113461038 4240387 complement(983429..985075) 1 NC_008309.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 985075 glnS 4240387 glnS Haemophilus somnus 129PT glutaminyl-tRNA synthetase YP_719105.1 983429 R 205914 CDS YP_719106.1 113461039 4240388 985301..986245 1 NC_008309.1 hypothetical protein 986245 4240388 HS_0896 Haemophilus somnus 129PT hypothetical protein YP_719106.1 985301 D 205914 CDS YP_719107.1 113461040 4240389 complement(986232..989321) 1 NC_008309.1 tetrathionate reductase subunit A 989321 ttrA 4240389 ttrA Haemophilus somnus 129PT tetrathionate reductase subunit A YP_719107.1 986232 R 205914 CDS YP_719108.1 113461041 4240390 complement(989314..990342) 1 NC_008309.1 tetrathionate reductase subunit C 990342 ttrC 4240390 ttrC Haemophilus somnus 129PT tetrathionate reductase subunit C YP_719108.1 989314 R 205914 CDS YP_719109.1 113461042 4240391 complement(990339..991076) 1 NC_008309.1 tetrathionate reductase subunit B 991076 ttrB 4240391 ttrB Haemophilus somnus 129PT tetrathionate reductase subunit B YP_719109.1 990339 R 205914 CDS YP_719110.1 113461043 4240392 991289..992986 1 NC_008309.1 sensor kinase 992986 ttrS 4240392 ttrS Haemophilus somnus 129PT sensor kinase YP_719110.1 991289 D 205914 CDS YP_719111.1 113461044 4240393 992988..993578 1 NC_008309.1 two component response regulator 993578 ttrR 4240393 ttrR Haemophilus somnus 129PT two component response regulator YP_719111.1 992988 D 205914 CDS YP_719112.1 113461045 4240394 complement(993618..995072) 1 NC_008309.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 995072 thiI 4240394 thiI Haemophilus somnus 129PT thiamine biosynthesis protein ThiI YP_719112.1 993618 R 205914 CDS YP_719113.1 113461046 4240395 995253..995513 1 NC_008309.1 exodeoxyribonuclease VII small subunit 995513 xseB 4240395 xseB Haemophilus somnus 129PT exodeoxyribonuclease VII small subunit YP_719113.1 995253 D 205914 CDS YP_719114.1 113461047 4240396 995529..996419 1 NC_008309.1 farnesyl-diphosphate synthase 996419 ispA 4240396 ispA Haemophilus somnus 129PT farnesyl-diphosphate synthase YP_719114.1 995529 D 205914 CDS YP_719115.1 113461048 4240397 996452..998305 1 NC_008309.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 998305 dxs 4240397 dxs Haemophilus somnus 129PT 1-deoxy-D-xylulose-5-phosphate synthase YP_719115.1 996452 D 205914 CDS YP_719116.1 113461049 4240398 998563..999471 1 NC_008309.1 permease 999471 4240398 HS_0906 Haemophilus somnus 129PT permease YP_719116.1 998563 D 205914 CDS YP_719117.1 113461050 4240399 999657..1000175 1 NC_008309.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 1000175 fabA 4240399 fabA Haemophilus somnus 129PT 3-hydroxydecanoyl-ACP dehydratase YP_719117.1 999657 D 205914 CDS YP_719118.1 113461051 4240400 complement(1000290..1002155) 1 NC_008309.1 protease IV 1002155 sppA 4240400 sppA Haemophilus somnus 129PT protease IV YP_719118.1 1000290 R 205914 CDS YP_719119.1 113461052 4240401 1002283..1002837 1 NC_008309.1 nitroreductase 1002837 4240401 HS_0909 Haemophilus somnus 129PT nitroreductase YP_719119.1 1002283 D 205914 CDS YP_719120.1 113461053 4240402 complement(1002903..1003559) 1 NC_008309.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 1003559 folE 4240402 folE Haemophilus somnus 129PT GTP cyclohydrolase I YP_719120.1 1002903 R 205914 CDS YP_719121.1 113461054 4240403 1003736..1004920 1 NC_008309.1 molybdopterin molybdochelatase 1004920 moeA 4240403 moeA Haemophilus somnus 129PT molybdopterin molybdochelatase YP_719121.1 1003736 D 205914 CDS YP_719122.1 113461055 4240404 1004928..1005656 1 NC_008309.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1005656 moeB 4240404 moeB Haemophilus somnus 129PT molybdopterin biosynthesis protein MoeB YP_719122.1 1004928 D 205914 CDS YP_719123.1 113461056 4240405 complement(1005729..1006361) 1 NC_008309.1 phosphoribosylglycinamide formyltransferase 1006361 purN 4240405 purN Haemophilus somnus 129PT phosphoribosylglycinamide formyltransferase YP_719123.1 1005729 R 205914 CDS YP_719124.1 113461057 4240406 complement(1006574..1009180) 1 NC_008309.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1009180 topA 4240406 topA Haemophilus somnus 129PT DNA topoisomerase I YP_719124.1 1006574 R 205914 CDS YP_719125.1 113461058 4240407 complement(1009461..1010081) 1 NC_008309.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1010081 ubiX 4240407 ubiX Haemophilus somnus 129PT 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_719125.1 1009461 R 205914 CDS YP_719126.1 113461059 4240408 complement(1010038..1011552) 1 NC_008309.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1011552 purF 4240408 purF Haemophilus somnus 129PT amidophosphoribosyltransferase YP_719126.1 1010038 R 205914 CDS YP_719127.1 113461060 4240409 complement(1011565..1012065) 1 NC_008309.1 colicin V production protein 1012065 cvpA 4240409 cvpA Haemophilus somnus 129PT colicin V production protein YP_719127.1 1011565 R 205914 CDS YP_719128.1 113461940 4240410 1012275..1012490 1 NC_008309.1 hypothetical protein 1012490 4240410 HS_0917a Haemophilus somnus 129PT hypothetical protein YP_719128.1 1012275 D 205914 CDS YP_719129.1 113461061 4240411 1012730..1013695 1 NC_008309.1 polysialic acid capsule expression protein, KpsF/GutQ family protein 1013695 kpsF 4240411 kpsF Haemophilus somnus 129PT polysialic acid capsule expression protein, KpsF/GutQ family protein YP_719129.1 1012730 D 205914 CDS YP_719130.1 113461062 4240412 1013679..1014251 1 NC_008309.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1014251 kdsC 4240412 kdsC Haemophilus somnus 129PT 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_719130.1 1013679 D 205914 CDS YP_719131.1 113461063 4240413 1014584..1015069 1 NC_008309.1 ferritin like protein 1 1015069 ftnA 4240413 ftnA Haemophilus somnus 129PT ferritin like protein 1 YP_719131.1 1014584 D 205914 CDS YP_719132.1 113461064 4240414 1015086..1015583 1 NC_008309.1 ferritin like protein 2 1015583 ftnB 4240414 ftnB Haemophilus somnus 129PT ferritin like protein 2 YP_719132.1 1015086 D 205914 CDS YP_719133.1 113461065 4240415 complement(1015812..1016567) 1 NC_008309.1 DeoR family transcriptional regulator 1016567 4240415 HS_0922 Haemophilus somnus 129PT DeoR family transcriptional regulator YP_719133.1 1015812 R 205914 CDS YP_719134.1 113461066 4240416 complement(1016671..1017900) 1 NC_008309.1 hypothetical protein 1017900 4240416 HS_0923 Haemophilus somnus 129PT hypothetical protein YP_719134.1 1016671 R 205914 CDS YP_719135.1 113461067 4240417 complement(1017897..1018895) 1 NC_008309.1 transports degraded pectin products into the bacterial cell; 2-keto-3-deoxygluconate permease 1018895 kdgT 4240417 kdgT Haemophilus somnus 129PT 2-keto-3-deoxygluconate permease YP_719135.1 1017897 R 205914 CDS YP_719136.1 113461068 4240418 complement(1018906..1019907) 1 NC_008309.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 1019907 pdxA 4240418 pdxA Haemophilus somnus 129PT 4-hydroxythreonine-4-phosphate dehydrogenase YP_719136.1 1018906 R 205914 CDS YP_719137.1 113461069 4240419 1020328..1021692 1 NC_008309.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1021692 dat 4240419 dat Haemophilus somnus 129PT diaminobutyrate--2-oxoglutarate aminotransferase YP_719137.1 1020328 D 205914 CDS YP_719138.1 113461070 4240420 1021782..1023317 1 NC_008309.1 L-2,4-diaminobutyrate decarboxylase 1023317 ddc 4240420 ddc Haemophilus somnus 129PT L-2,4-diaminobutyrate decarboxylase YP_719138.1 1021782 D 205914 CDS YP_719139.1 113461071 4240421 complement(1023434..1025458) 1 NC_008309.1 DNA helicase/exodeoxyribonuclease V subunit alpha 1025458 recD 4240421 recD Haemophilus somnus 129PT DNA helicase/exodeoxyribonuclease V subunit alpha YP_719139.1 1023434 R 205914 CDS YP_719140.1 113461072 4240422 complement(1025458..1029108) 1 NC_008309.1 DNA helicase/exodeoxyribonuclease V subunit beta 1029108 recB 4240422 recB Haemophilus somnus 129PT DNA helicase/exodeoxyribonuclease V subunit beta YP_719140.1 1025458 R 205914 CDS YP_719141.1 113461073 4240423 complement(1029219..1030082) 1 NC_008309.1 metalloprotease; heat shock protein HtpX 1030082 htpX 4240423 htpX Haemophilus somnus 129PT heat shock protein HtpX YP_719141.1 1029219 R 205914 CDS YP_719142.1 113461074 4240424 complement(1030168..1031229) 1 NC_008309.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 1031229 dinP 4240424 dinP Haemophilus somnus 129PT DNA polymerase IV YP_719142.1 1030168 R 205914 CDS YP_719143.1 113461075 4240425 1031554..1032507 1 NC_008309.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1032507 accA 4240425 accA Haemophilus somnus 129PT acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_719143.1 1031554 D 205914 CDS YP_719144.1 113461076 4240426 1032576..1033436 1 NC_008309.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase 1033436 pdxY 4240426 pdxY Haemophilus somnus 129PT pyridoxamine kinase YP_719144.1 1032576 D 205914 CDS YP_719145.1 113461077 4240427 1033511..1034794 1 NC_008309.1 tRNA(Ile)-lysidine synthetase; cell-cycle protein 1034794 mesJ 4240427 mesJ Haemophilus somnus 129PT cell-cycle protein YP_719145.1 1033511 D 205914 CDS YP_719146.1 113461078 4240428 complement(1034871..1035302) 1 NC_008309.1 hypothetical protein 1035302 4240428 HS_0935 Haemophilus somnus 129PT hypothetical protein YP_719146.1 1034871 R 205914 CDS YP_719147.1 113461079 4240429 1035431..1036189 1 NC_008309.1 hypothetical protein 1036189 4240429 HS_0936 Haemophilus somnus 129PT hypothetical protein YP_719147.1 1035431 D 205914 CDS YP_719148.1 113461080 4240430 1036481..1037227 1 NC_008309.1 hypothetical protein 1037227 4240430 HS_0937 Haemophilus somnus 129PT hypothetical protein YP_719148.1 1036481 D 205914 CDS YP_719149.1 113461081 4240431 complement(1037324..1038973) 1 NC_008309.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 1038973 pgi 4240431 pgi Haemophilus somnus 129PT glucose-6-phosphate isomerase YP_719149.1 1037324 R 205914 CDS YP_719150.1 113461082 4240432 complement(1039001..1040080) 1 NC_008309.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 1040080 alr 4240432 alr Haemophilus somnus 129PT alanine racemase YP_719150.1 1039001 R 205914 CDS YP_719151.1 113461083 4240433 complement(1040097..1041515) 1 NC_008309.1 unwinds double stranded DNA; replicative DNA helicase 1041515 dnaB 4240433 dnaB Haemophilus somnus 129PT replicative DNA helicase YP_719151.1 1040097 R 205914 CDS YP_719152.1 113461084 4240434 complement(1041668..1042747) 1 NC_008309.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1042747 aroG 4240434 aroG Haemophilus somnus 129PT phospho-2-dehydro-3-deoxyheptonate aldolase YP_719152.1 1041668 R 205914 CDS YP_719153.1 113461085 4240435 complement(1042854..1043969) 1 NC_008309.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 1043969 lolE 4240435 lolE Haemophilus somnus 129PT outer membrane-specific lipoprotein transporter subunit LolE YP_719153.1 1042854 R 205914 CDS YP_719154.1 113461086 4240436 complement(1044101..1044784) 1 NC_008309.1 lipoprotein releasing system, ATP-binding protein 1044784 lolD 4240436 lolD Haemophilus somnus 129PT lipoprotein releasing system, ATP-binding protein YP_719154.1 1044101 R 205914 CDS YP_719155.1 113461087 4240437 complement(1044805..1045995) 1 NC_008309.1 lipoprotein releasing system, transmembrane protein 1045995 lolC 4240437 lolC Haemophilus somnus 129PT lipoprotein releasing system, transmembrane protein YP_719155.1 1044805 R 205914 CDS YP_719156.1 113461088 4240438 complement(1046165..1047106) 1 NC_008309.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1047106 ldhA 4240438 ldhA Haemophilus somnus 129PT glycerate dehydrogenase YP_719156.1 1046165 R 205914 CDS YP_719157.1 113461089 4240439 complement(1047218..1048072) 1 NC_008309.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1048072 kdsA 4240439 kdsA Haemophilus somnus 129PT 2-dehydro-3-deoxyphosphooctonate aldolase YP_719157.1 1047218 R 205914 CDS YP_719158.1 113461090 4240440 complement(1048086..1048880) 1 NC_008309.1 hypothetical protein 1048880 4240440 HS_0947 Haemophilus somnus 129PT hypothetical protein YP_719158.1 1048086 R 205914 CDS YP_719159.1 113461091 4240441 complement(1048864..1049769) 1 NC_008309.1 peptide release factor glutamine N(5)-methylase 1049769 hemK 4240441 hemK Haemophilus somnus 129PT peptide release factor glutamine N(5)-methylase YP_719159.1 1048864 R 205914 CDS YP_719160.1 113461092 4240442 complement(1049784..1050275) 1 NC_008309.1 hypothetical protein 1050275 4240442 HS_0949 Haemophilus somnus 129PT hypothetical protein YP_719160.1 1049784 R 205914 CDS YP_719161.1 113461093 4240443 complement(1050327..1051409) 1 NC_008309.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1051409 prfA 4240443 prfA Haemophilus somnus 129PT peptide chain release factor 1 YP_719161.1 1050327 R 205914 CDS YP_719162.1 113461094 4240444 complement(1051572..1051799) 1 NC_008309.1 hypothetical protein 1051799 4240444 HS_0951 Haemophilus somnus 129PT hypothetical protein YP_719162.1 1051572 R 205914 CDS YP_719163.1 113461095 4240445 complement(1051914..1052375) 1 NC_008309.1 outer membrane lipoprotein pcp precursor 1052375 pcp 4240445 pcp Haemophilus somnus 129PT outer membrane lipoprotein pcp precursor YP_719163.1 1051914 R 205914 CDS YP_719164.1 113461096 4240446 complement(1052399..1052722) 1 NC_008309.1 hypothetical protein 1052722 4240446 HS_0953 Haemophilus somnus 129PT hypothetical protein YP_719164.1 1052399 R 205914 CDS YP_719165.1 113461097 4240447 complement(1052728..1053315) 1 NC_008309.1 hypothetical protein 1053315 4240447 HS_0954 Haemophilus somnus 129PT hypothetical protein YP_719165.1 1052728 R 205914 CDS YP_719166.1 113461098 4240448 1053399..1055132 1 NC_008309.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1055132 argS 4240448 argS Haemophilus somnus 129PT arginyl-tRNA synthetase YP_719166.1 1053399 D 205914 CDS YP_719167.1 113461099 4240449 complement(1055206..1056078) 1 NC_008309.1 succinyl-CoA synthetase (ADP-forming) subunit alpha 1056078 sucD 4240449 sucD Haemophilus somnus 129PT succinyl-CoA synthetase (ADP-forming) subunit alpha YP_719167.1 1055206 R 205914 CDS YP_719168.1 113461100 4240450 complement(1056078..1057247) 1 NC_008309.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1057247 sucC 4240450 sucC Haemophilus somnus 129PT succinyl-CoA synthetase subunit beta YP_719168.1 1056078 R 205914 CDS YP_719169.1 113461101 4240451 complement(1057301..1058524) 1 NC_008309.1 2-oxoglutarate dehydrogenase E2 component 1058524 sucB 4240451 sucB Haemophilus somnus 129PT 2-oxoglutarate dehydrogenase E2 component YP_719169.1 1057301 R 205914 CDS YP_719170.1 113461102 4240452 complement(1058613..1061408) 1 NC_008309.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1061408 sucA 4240452 sucA Haemophilus somnus 129PT 2-oxoglutarate dehydrogenase E1 component YP_719170.1 1058613 R 205914 CDS YP_719171.1 113461103 4240453 1061754..1063037 1 NC_008309.1 citrate synthase 1063037 gltA 4240453 gltA Haemophilus somnus 129PT citrate synthase YP_719171.1 1061754 D 205914 CDS YP_719172.1 113461104 4240454 1063175..1064305 1 NC_008309.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta 1064305 nrdB 4240454 nrdB Haemophilus somnus 129PT ribonucleotide-diphosphate reductase subunit beta YP_719172.1 1063175 D 205914 CDS YP_719173.1 113461105 4240455 1064371..1064628 1 NC_008309.1 ferredoxin, 2Fe-2S type 1064628 4240455 HS_0962 Haemophilus somnus 129PT ferredoxin, 2Fe-2S type YP_719173.1 1064371 D 205914 CDS YP_719174.1 113461106 4240456 complement(1064682..1065869) 1 NC_008309.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1065869 nhaA 4240456 nhaA Haemophilus somnus 129PT pH-dependent sodium/proton antiporter YP_719174.1 1064682 R 205914 CDS YP_719175.1 113461107 4240457 complement(1066056..1067402) 1 NC_008309.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1067402 dgt 4240457 dgt Haemophilus somnus 129PT deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_719175.1 1066056 R 205914 CDS YP_719176.1 113461108 4240458 complement(1067418..1067642) 1 NC_008309.1 hypothetical protein 1067642 4240458 HS_0965 Haemophilus somnus 129PT hypothetical protein YP_719176.1 1067418 R 205914 CDS YP_719177.1 113461109 4240459 1067518..1068075 1 NC_008309.1 nuclease 1068075 4240459 HS_0966 Haemophilus somnus 129PT nuclease YP_719177.1 1067518 D 205914 CDS YP_719178.1 113461110 4240460 1068065..1069264 1 NC_008309.1 cysteine desulfurase, aminotransferase, class V 1069264 csd 4240460 csd Haemophilus somnus 129PT cysteine desulfurase, aminotransferase, class V YP_719178.1 1068065 D 205914 CDS YP_719179.1 113461111 4240461 1069261..1069641 1 NC_008309.1 hypothetical protein 1069641 4240461 HS_0968 Haemophilus somnus 129PT hypothetical protein YP_719179.1 1069261 D 205914 CDS YP_719180.1 113461112 4240462 1070099..1070389 1 NC_008309.1 RelB protein 1070389 relB 4240462 relB Haemophilus somnus 129PT RelB protein YP_719180.1 1070099 D 205914 CDS YP_719181.1 113461113 4240463 1070328..1070642 1 NC_008309.1 hypothetical protein 1070642 4240463 HS_0970 Haemophilus somnus 129PT hypothetical protein YP_719181.1 1070328 D 205914 CDS YP_719182.1 113461114 4240464 complement(1070718..1071668) 1 NC_008309.1 ompH family outer membrane protein 1071668 ompH 4240464 ompH Haemophilus somnus 129PT ompH family outer membrane protein YP_719182.1 1070718 R 205914 CDS YP_719183.1 113461115 4240465 complement(1071929..1072246) 1 NC_008309.1 translation initiation factor 1 (eIF-1/SUI1) 1072246 yciH 4240465 yciH Haemophilus somnus 129PT translation initiation factor 1 (eIF-1/SUI1) YP_719183.1 1071929 R 205914 CDS YP_719184.1 113461116 4240466 complement(1072426..1073622) 1 NC_008309.1 tetratricopeptide repeat protein 1073622 4240466 HS_0973 Haemophilus somnus 129PT tetratricopeptide repeat protein YP_719184.1 1072426 R 205914 CDS YP_719185.1 113461117 4240467 complement(1073632..1073916) 1 NC_008309.1 hypothetical protein 1073916 4240467 HS_0974 Haemophilus somnus 129PT hypothetical protein YP_719185.1 1073632 R 205914 CDS YP_719186.1 113461118 4240468 complement(1074036..1074320) 1 NC_008309.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1074320 ihfB 4240468 ihfB Haemophilus somnus 129PT integration host factor subunit beta YP_719186.1 1074036 R 205914 CDS YP_719187.1 113461119 4240469 complement(1074384..1076027) 1 NC_008309.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1076027 rpsA 4240469 rpsA Haemophilus somnus 129PT 30S ribosomal protein S1 YP_719187.1 1074384 R 205914 CDS YP_719188.1 113461120 4240470 complement(1076100..1076813) 1 NC_008309.1 cytidylate kinase 1076813 cmkA 4240470 cmkA Haemophilus somnus 129PT cytidylate kinase YP_719188.1 1076100 R 205914 CDS YP_719189.1 113461121 4240471 complement(1076866..1077891) 1 NC_008309.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 1077891 lpxD 4240471 lpxD Haemophilus somnus 129PT UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_719189.1 1076866 R 205914 CDS YP_719190.1 113461122 4240472 complement(1077891..1078475) 1 NC_008309.1 outer membrane protein 1078475 skp 4240472 skp Haemophilus somnus 129PT outer membrane protein YP_719190.1 1077891 R 205914 CDS YP_719191.1 113461123 4240473 complement(1078572..1080980) 1 NC_008309.1 surface antigen 1080980 4240473 HS_0980 Haemophilus somnus 129PT surface antigen YP_719191.1 1078572 R 205914 CDS YP_719192.1 113461124 4240474 complement(1081049..1082380) 1 NC_008309.1 peptidase RseP 1082380 4240474 HS_0981 Haemophilus somnus 129PT peptidase RseP YP_719192.1 1081049 R 205914 CDS YP_719193.1 113461125 4240475 complement(1082389..1083252) 1 NC_008309.1 phosphatidate cytidylyltransferase 1083252 cdsA 4240475 cdsA Haemophilus somnus 129PT phosphatidate cytidylyltransferase YP_719193.1 1082389 R 205914 CDS YP_719194.1 113461126 4240476 complement(1083265..1083990) 1 NC_008309.1 UDP pyrophosphate synthetase 1083990 uppS 4240476 uppS Haemophilus somnus 129PT UDP pyrophosphate synthetase YP_719194.1 1083265 R 205914 CDS YP_719195.1 113461127 4240477 complement(1084172..1084678) 1 NC_008309.1 hypothetical protein 1084678 4240477 HS_0984 Haemophilus somnus 129PT hypothetical protein YP_719195.1 1084172 R 205914 CDS YP_719196.1 113461128 4240478 complement(1084680..1085888) 1 NC_008309.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1085888 dxr 4240478 dxr Haemophilus somnus 129PT 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_719196.1 1084680 R 205914 CDS YP_719197.1 113461129 4240479 complement(1085959..1086516) 1 NC_008309.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1086516 frr 4240479 frr Haemophilus somnus 129PT ribosome recycling factor YP_719197.1 1085959 R 205914 CDS YP_719198.1 113461130 4240480 complement(1086570..1087286) 1 NC_008309.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1087286 pyrH 4240480 pyrH Haemophilus somnus 129PT uridylate kinase YP_719198.1 1086570 R 205914 CDS YP_719199.1 113461131 4240481 complement(1087385..1087693) 1 NC_008309.1 hypothetical protein 1087693 4240481 HS_0988 Haemophilus somnus 129PT hypothetical protein YP_719199.1 1087385 R 205914 CDS YP_719200.1 113461132 4240482 1087797..1088108 1 NC_008309.1 hypothetical protein 1088108 4240482 HS_0989 Haemophilus somnus 129PT hypothetical protein YP_719200.1 1087797 D 205914 CDS YP_719201.1 113461133 4240483 1088177..1090873 1 NC_008309.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 1090873 secA 4240483 secA Haemophilus somnus 129PT preprotein translocase subunit SecA YP_719201.1 1088177 D 205914 CDS YP_719202.1 113461134 4240484 1090920..1091318 1 NC_008309.1 7,8-dihydro-8-oxoguanine-triphosphatase 1091318 mutT 4240484 mutT Haemophilus somnus 129PT 7,8-dihydro-8-oxoguanine-triphosphatase YP_719202.1 1090920 D 205914 CDS YP_719203.1 113461135 4240485 complement(1091386..1095297) 1 NC_008309.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 1095297 hrpA 4240485 hrpA Haemophilus somnus 129PT ATP-dependent RNA helicase HrpA YP_719203.1 1091386 R 205914 CDS YP_719204.1 113461136 4240486 complement(1095344..1095799) 1 NC_008309.1 permease 1095799 4240486 HS_0993 Haemophilus somnus 129PT permease YP_719204.1 1095344 R 205914 CDS YP_719205.1 113461137 4240487 1096112..1098751 1 NC_008309.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 1098751 ppc 4240487 ppc Haemophilus somnus 129PT phosphoenolpyruvate carboxylase YP_719205.1 1096112 D 205914 CDS YP_719206.1 113461138 4240488 1098855..1099178 1 NC_008309.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 1099178 4240488 HS_0995 Haemophilus somnus 129PT dsDNA-mimic protein YP_719206.1 1098855 D 205914 CDS YP_719207.1 113461139 4240489 complement(1099335..1100282) 1 NC_008309.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1100282 prs 4240489 prs Haemophilus somnus 129PT ribose-phosphate pyrophosphokinase YP_719207.1 1099335 R 205914 CDS YP_719208.1 113461140 4240490 complement(1100290..1101231) 1 NC_008309.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1101231 ipk 4240490 ipk Haemophilus somnus 129PT 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_719208.1 1100290 R 205914 CDS YP_719209.1 113461141 4240491 complement(1101231..1101860) 1 NC_008309.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1101860 lolB 4240491 lolB Haemophilus somnus 129PT outer membrane lipoprotein LolB YP_719209.1 1101231 R 205914 CDS YP_719210.1 113461142 4240492 1102038..1102307 1 NC_008309.1 hypothetical protein 1102307 4240492 HS_0999 Haemophilus somnus 129PT hypothetical protein YP_719210.1 1102038 D 205914 CDS YP_719211.1 113461143 4240493 1102586..1103062 1 NC_008309.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 1103062 greA 4240493 greA Haemophilus somnus 129PT transcription elongation factor GreA YP_719211.1 1102586 D 205914 CDS YP_719212.1 113461144 4240494 complement(1103118..1103414) 1 NC_008309.1 hypothetical protein 1103414 4240494 HS_1001 Haemophilus somnus 129PT hypothetical protein YP_719212.1 1103118 R 205914 CDS YP_719213.1 113461145 4240495 complement(1103541..1103891) 1 NC_008309.1 arsenate reductase 1103891 arsC 4240495 arsC Haemophilus somnus 129PT arsenate reductase YP_719213.1 1103541 R 205914 CDS YP_719214.1 113461146 4240496 1103977..1105029 1 NC_008309.1 permease 1105029 perM 4240496 perM Haemophilus somnus 129PT permease YP_719214.1 1103977 D 205914 CDS YP_719215.1 113461147 4240497 1105109..1106497 1 NC_008309.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase 1106497 4240497 HS_1004 Haemophilus somnus 129PT transglycosylase YP_719215.1 1105109 D 205914 CDS YP_719216.1 113461148 4240498 complement(1106463..1106660) 1 NC_008309.1 hypothetical protein 1106660 4240498 HS_1005 Haemophilus somnus 129PT hypothetical protein YP_719216.1 1106463 R 205914 CDS YP_719217.1 113461149 4240499 1107112..1108428 1 NC_008309.1 antiporter protein responsible for lysine import and cadaverine export; member of the lysine-dependent acid resistance system 4 (AR4); inner membrane protein; lysine/cadaverine antiporter 1108428 cadB 4240499 cadB Haemophilus somnus 129PT lysine/cadaverine antiporter YP_719217.1 1107112 D 205914 CDS YP_719218.1 113461150 4240500 1108445..1110571 1 NC_008309.1 L-lysine decarboxylase 1110571 cadA 4240500 cadA Haemophilus somnus 129PT L-lysine decarboxylase YP_719218.1 1108445 D 205914 CDS YP_719219.1 113461151 4240501 1110793..1112283 1 NC_008309.1 lysyl-tRNA synthetase 1112283 lysS 4240501 lysS Haemophilus somnus 129PT lysyl-tRNA synthetase YP_719219.1 1110793 D 205914 CDS YP_719220.1 113461152 4240502 1112316..1113203 1 NC_008309.1 specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 1113203 iciA 4240502 iciA Haemophilus somnus 129PT chromosome replication initiation inhibitor protein YP_719220.1 1112316 D 205914 CDS YP_719221.1 113461153 4240503 complement(1113463..1114458) 1 NC_008309.1 biotin synthase 1114458 bioB 4240503 bioB Haemophilus somnus 129PT biotin synthase YP_719221.1 1113463 R 205914 CDS YP_719222.1 113461154 4240504 complement(1114490..1115134) 1 NC_008309.1 thiamine ABC transporter ATP-binding protein 1115134 thiQ 4240504 thiQ Haemophilus somnus 129PT thiamine ABC transporter ATP-binding protein YP_719222.1 1114490 R 205914 CDS YP_719223.1 113461155 4240505 complement(1115127..1116671) 1 NC_008309.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 1116671 thiP 4240505 thiP Haemophilus somnus 129PT thiamine transporter membrane protein YP_719223.1 1115127 R 205914 CDS YP_719224.1 113461156 4240506 complement(1116733..1117749) 1 NC_008309.1 thiamine ABC transporter periplasmic-binding protein 1117749 tbpA 4240506 tbpA Haemophilus somnus 129PT thiamine ABC transporter periplasmic-binding protein YP_719224.1 1116733 R 205914 CDS YP_719225.1 113461157 4240507 1118086..1119444 1 NC_008309.1 permease 1119444 4240507 HS_1014 Haemophilus somnus 129PT permease YP_719225.1 1118086 D 205914 CDS YP_719226.1 113461158 4240508 1119492..1120085 1 NC_008309.1 hypothetical protein 1120085 4240508 HS_1015 Haemophilus somnus 129PT hypothetical protein YP_719226.1 1119492 D 205914 CDS YP_719227.1 113461941 4240509 complement(1120120..1120293) 1 NC_008309.1 hypothetical protein 1120293 4240509 HS_1015a Haemophilus somnus 129PT hypothetical protein YP_719227.1 1120120 R 205914 CDS YP_719228.1 113461159 4240510 complement(1120294..1120884) 1 NC_008309.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 1120884 4240510 HS_1016 Haemophilus somnus 129PT RNA polymerase sigma factor YP_719228.1 1120294 R 205914 CDS YP_719229.1 113461160 4240511 1120952..1121905 1 NC_008309.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 1121905 4240511 HS_1017 Haemophilus somnus 129PT sulfite oxidase subunit YedY YP_719229.1 1120952 D 205914 CDS YP_719230.1 113461161 4240512 1121905..1122504 1 NC_008309.1 in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; sulfite oxidase subunit YedZ 1122504 4240512 HS_1018 Haemophilus somnus 129PT sulfite oxidase subunit YedZ YP_719230.1 1121905 D 205914 CDS YP_719231.1 113461162 4240513 complement(1122606..1123907) 1 NC_008309.1 permease 1123907 4240513 HS_1019 Haemophilus somnus 129PT permease YP_719231.1 1122606 R 205914 CDS YP_719232.1 113461163 4240518 complement(1124740..1126896) 1 NC_008309.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1126896 rlmL 4240518 rlmL Haemophilus somnus 129PT 23S rRNA m(2)G2445 methyltransferase YP_719232.1 1124740 R 205914 CDS YP_719233.1 113461164 4240519 complement(1126942..1128690) 1 NC_008309.1 involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 1128690 msbA 4240519 msbA Haemophilus somnus 129PT lipid transporter ATP-binding/permease YP_719233.1 1126942 R 205914 CDS YP_719234.1 113461165 4240520 complement(1128741..1131167) 1 NC_008309.1 recombination protein 2 1131167 rec2 4240520 rec2 Haemophilus somnus 129PT recombination protein 2 YP_719234.1 1128741 R 205914 CDS YP_719235.1 113461166 4240521 1131493..1131903 1 NC_008309.1 DnaK suppressor protein 1131903 dksA 4240521 dksA Haemophilus somnus 129PT DnaK suppressor protein YP_719235.1 1131493 D 205914 CDS YP_719236.1 113461167 4240522 1132205..1133578 1 NC_008309.1 poly(A) polymerase 1133578 pcnB 4240522 pcnB Haemophilus somnus 129PT poly(A) polymerase YP_719236.1 1132205 D 205914 CDS YP_719237.1 113461168 4240523 1133575..1134051 1 NC_008309.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1134051 folK 4240523 folK Haemophilus somnus 129PT 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_719237.1 1133575 D 205914 CDS YP_719238.1 113461169 4240524 complement(1134150..1135298) 1 NC_008309.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 1135298 nagA 4240524 nagA Haemophilus somnus 129PT N-acetylglucosamine-6-phosphate deacetylase YP_719238.1 1134150 R 205914 CDS YP_719239.1 113461170 4240525 complement(1135311..1136117) 1 NC_008309.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 1136117 nagB 4240525 nagB Haemophilus somnus 129PT glucosamine-6-phosphate deaminase YP_719239.1 1135311 R 205914 CDS YP_719240.1 113461171 4240526 complement(1136349..1136801) 1 NC_008309.1 molybdopterin synthase subunit MoaE 1136801 moaE 4240526 moaE Haemophilus somnus 129PT molybdopterin synthase subunit MoaE YP_719240.1 1136349 R 205914 CDS YP_719241.1 113461172 4240527 complement(1136802..1137047) 1 NC_008309.1 catalyzes the conversion of molybdopterin precursor Z into molybdopterin; molybdopterin synthase small subunit 1137047 moaD 4240527 moaD Haemophilus somnus 129PT molybdopterin synthase small subunit YP_719241.1 1136802 R 205914 CDS YP_719242.1 113461173 4240528 complement(1137069..1137545) 1 NC_008309.1 GTP cyclohydrolase subunit MoaC 1137545 moaC 4240528 moaC Haemophilus somnus 129PT GTP cyclohydrolase subunit MoaC YP_719242.1 1137069 R 205914 CDS YP_719243.1 113461174 4240529 complement(1137555..1138571) 1 NC_008309.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 1138571 moaA 4240529 moaA Haemophilus somnus 129PT molybdenum cofactor biosynthesis protein A YP_719243.1 1137555 R 205914 CDS YP_719244.1 113461175 4240530 1138843..1139844 1 NC_008309.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 1139844 purR 4240530 purR Haemophilus somnus 129PT DNA-binding transcriptional repressor PurR YP_719244.1 1138843 D 205914 CDS YP_719245.1 113461176 4240531 complement(1139894..1140865) 1 NC_008309.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1140865 cysB 4240531 cysB Haemophilus somnus 129PT transcriptional regulator CysB YP_719245.1 1139894 R 205914 CDS YP_719246.1 113461177 4240532 complement(1140927..1141253) 1 NC_008309.1 glutaredoxin-like protein 1141253 4240532 HS_1034 Haemophilus somnus 129PT glutaredoxin-like protein YP_719246.1 1140927 R 205914 CDS YP_719247.1 113461178 4240533 complement(1141355..1142422) 1 NC_008309.1 hemagglutinin antigen 1142422 hagA 4240533 hagA Haemophilus somnus 129PT hemagglutinin antigen YP_719247.1 1141355 R 205914 CDS YP_719248.1 113461179 4240534 complement(1142526..1143902) 1 NC_008309.1 metalloprotease 1143902 4240534 HS_1036 Haemophilus somnus 129PT metalloprotease YP_719248.1 1142526 R 205914 CDS YP_719249.1 113461180 4240535 1144091..1144885 1 NC_008309.1 high-affinity zinc uptake system, ATP-binding protein 1144885 znuC 4240535 znuC Haemophilus somnus 129PT high-affinity zinc uptake system, ATP-binding protein YP_719249.1 1144091 D 205914 CDS YP_719250.1 113461181 4240536 1144895..1145680 1 NC_008309.1 high-affinity zinc uptake system, membrane protein 1145680 znuB 4240536 znuB Haemophilus somnus 129PT high-affinity zinc uptake system, membrane protein YP_719250.1 1144895 D 205914 CDS YP_719251.1 113461182 4240537 complement(1145754..1147193) 1 NC_008309.1 possible sodium/alanine symporter family; amino acid carrier protein 1147193 4240537 HS_1039 Haemophilus somnus 129PT amino acid carrier protein YP_719251.1 1145754 R 205914 CDS YP_719252.1 113461183 4240538 complement(1147178..1147396) 1 NC_008309.1 hypothetical protein 1147396 4240538 HS_1040 Haemophilus somnus 129PT hypothetical protein YP_719252.1 1147178 R 205914 CDS YP_719253.1 113461184 4240539 complement(1147365..1148282) 1 NC_008309.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 1148282 4240539 HS_1041 Haemophilus somnus 129PT N-acetyl-D-glucosamine kinase YP_719253.1 1147365 R 205914 CDS YP_719254.1 113461185 4240540 complement(1148318..1149055) 1 NC_008309.1 phosphatidylglycerophosphatase 1149055 pgpB 4240540 pgpB Haemophilus somnus 129PT phosphatidylglycerophosphatase YP_719254.1 1148318 R 205914 CDS YP_719255.1 113461186 4240541 1149148..1149798 1 NC_008309.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1149798 ribA 4240541 ribA Haemophilus somnus 129PT GTP cyclohydrolase II YP_719255.1 1149148 D 205914 CDS YP_719256.1 113461187 4240542 1149951..1153046 1 NC_008309.1 hypothetical protein 1153046 4240542 HS_1044 Haemophilus somnus 129PT hypothetical protein YP_719256.1 1149951 D 205914 CDS YP_719257.1 113461188 4240543 1153063..1153485 1 NC_008309.1 hypothetical protein 1153485 4240543 HS_1045 Haemophilus somnus 129PT hypothetical protein YP_719257.1 1153063 D 205914 CDS YP_719258.1 113461189 4240544 1153580..1154095 1 NC_008309.1 permease 1154095 4240544 HS_1046 Haemophilus somnus 129PT permease YP_719258.1 1153580 D 205914 CDS YP_719259.1 113461190 4240545 1153936..1155066 1 NC_008309.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1155066 hemH 4240545 hemH Haemophilus somnus 129PT ferrochelatase YP_719259.1 1153936 D 205914 CDS YP_719260.1 113461191 4240546 1155218..1156255 1 NC_008309.1 spermidine/putrescine-binding periplasmic protein 1156255 potD 4240546 potD Haemophilus somnus 129PT spermidine/putrescine-binding periplasmic protein YP_719260.1 1155218 D 205914 CDS YP_719261.1 113461192 4240547 complement(1156362..1157408) 1 NC_008309.1 DegS serine peptidase 1157408 degS 4240547 degS Haemophilus somnus 129PT DegS serine peptidase YP_719261.1 1156362 R 205914 CDS YP_719262.1 113461193 4240548 complement(1157428..1158558) 1 NC_008309.1 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase 1158558 ribD 4240548 ribD Haemophilus somnus 129PT diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase YP_719262.1 1157428 R 205914 CDS YP_719263.1 113461194 4240549 complement(1158561..1159010) 1 NC_008309.1 transcriptional regulator NrdR 1159010 nrdR 4240549 nrdR Haemophilus somnus 129PT transcriptional regulator NrdR YP_719263.1 1158561 R 205914 CDS YP_719264.1 113461195 4240550 complement(1159157..1159453) 1 NC_008309.1 branched chain amino acid ABC transporter 1159453 azlD 4240550 azlD Haemophilus somnus 129PT branched chain amino acid ABC transporter YP_719264.1 1159157 R 205914 CDS YP_719265.1 113461196 4240551 complement(1159497..1160228) 1 NC_008309.1 branched chain amino acid ABC transporter 1160228 azlC 4240551 azlC Haemophilus somnus 129PT branched chain amino acid ABC transporter YP_719265.1 1159497 R 205914 CDS YP_719266.1 113461197 4240552 complement(1160236..1161162) 1 NC_008309.1 transcriptional regulator 1161162 metR 4240552 metR Haemophilus somnus 129PT transcriptional regulator YP_719266.1 1160236 R 205914 CDS YP_719267.1 113461198 4240553 complement(1161299..1162234) 1 NC_008309.1 oxidizes malate to oxaloacetate; malate dehydrogenase 1162234 mdh 4240553 mdh Haemophilus somnus 129PT malate dehydrogenase YP_719267.1 1161299 R 205914 CDS YP_719268.1 113461199 4240554 1162457..1162924 1 NC_008309.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1162924 argR 4240554 argR Haemophilus somnus 129PT arginine repressor YP_719268.1 1162457 D 205914 CDS YP_719269.1 113461200 4240555 1162946..1163833 1 NC_008309.1 hypothetical protein 1163833 4240555 HS_1057 Haemophilus somnus 129PT hypothetical protein YP_719269.1 1162946 D 205914 CDS YP_719270.1 113461201 4240556 complement(1163918..1172638) 1 NC_008309.1 large adhesin 1172638 4240556 HS_1058 Haemophilus somnus 129PT large adhesin YP_719270.1 1163918 R 205914 CDS YP_719271.1 113461202 4240557 1173363..1173944 1 NC_008309.1 Na(+)-translocating NADH-quinone reductase subunit E 1173944 rnfA 4240557 rnfA Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit E YP_719271.1 1173363 D 205914 CDS YP_719272.1 113461203 4240558 1173948..1174538 1 NC_008309.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1174538 rnfB 4240558 rnfB Haemophilus somnus 129PT electron transport complex protein RnfB YP_719272.1 1173948 D 205914 CDS YP_719273.1 113461204 4240559 1174542..1176521 1 NC_008309.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC 1176521 rnfC 4240559 rnfC Haemophilus somnus 129PT electron transport complex protein RnfC YP_719273.1 1174542 D 205914 CDS YP_719274.1 113461205 4240560 1176538..1177629 1 NC_008309.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1177629 rnfD 4240560 rnfD Haemophilus somnus 129PT electron transport complex protein RnfD YP_719274.1 1176538 D 205914 CDS YP_719275.1 113461206 4240561 1177626..1178249 1 NC_008309.1 part of membrane-bound complex hought to be involved in electron transport to nitrogen; electron transport complex protein RnfG 1178249 rnfG 4240561 rnfG Haemophilus somnus 129PT electron transport complex protein RnfG YP_719275.1 1177626 D 205914 CDS YP_719276.1 113461207 4240562 1178306..1178962 1 NC_008309.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex RsxE subunit 1178962 rnfE 4240562 rnfE Haemophilus somnus 129PT electron transport complex RsxE subunit YP_719276.1 1178306 D 205914 CDS YP_719277.1 113461208 4240563 1178959..1179594 1 NC_008309.1 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 1179594 nth 4240563 nth Haemophilus somnus 129PT endonuclease III / DNA-(apurinic or apyrimidinic site) lyase YP_719277.1 1178959 D 205914 CDS YP_719278.1 113461209 4240564 1179629..1180993 1 NC_008309.1 sodium-dependent transporter 1180993 4240564 HS_1066 Haemophilus somnus 129PT sodium-dependent transporter YP_719278.1 1179629 D 205914 CDS YP_719279.1 113461210 4240566 1181208..1181792 1 NC_008309.1 hypothetical protein 1181792 4240566 HS_1067 Haemophilus somnus 129PT hypothetical protein YP_719279.1 1181208 D 205914 CDS YP_719280.1 113461211 4240567 complement(1181872..1184517) 1 NC_008309.1 hypothetical protein 1184517 4240567 HS_1068 Haemophilus somnus 129PT hypothetical protein YP_719280.1 1181872 R 205914 CDS YP_719281.1 113461212 4240568 complement(1184495..1185748) 1 NC_008309.1 hypothetical protein 1185748 4240568 HS_1069 Haemophilus somnus 129PT hypothetical protein YP_719281.1 1184495 R 205914 CDS YP_719282.1 113461213 4240569 1185960..1186595 1 NC_008309.1 affects solute and DNA transport through an unknown mechanism; solute/DNA competence effector 1186595 proQ 4240569 proQ Haemophilus somnus 129PT solute/DNA competence effector YP_719282.1 1185960 D 205914 CDS YP_719283.1 113461214 4240570 1186675..1188702 1 NC_008309.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease 1188702 prc 4240570 prc Haemophilus somnus 129PT carboxy-terminal protease YP_719283.1 1186675 D 205914 CDS YP_719284.1 113461215 4240571 1188767..1190194 1 NC_008309.1 hypothetical protein 1190194 4240571 HS_1072 Haemophilus somnus 129PT hypothetical protein YP_719284.1 1188767 D 205914 CDS YP_719285.1 113461216 4240572 1190271..1190834 1 NC_008309.1 hypothetical protein 1190834 4240572 HS_1073 Haemophilus somnus 129PT hypothetical protein YP_719285.1 1190271 D 205914 CDS YP_719286.1 113461217 4240573 1190910..1191542 1 NC_008309.1 glyoxalase II family protein 1191542 4240573 HS_1074 Haemophilus somnus 129PT glyoxalase II family protein YP_719286.1 1190910 D 205914 CDS YP_719287.1 113461218 4240574 1191644..1192933 1 NC_008309.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1192933 serS 4240574 serS Haemophilus somnus 129PT seryl-tRNA synthetase YP_719287.1 1191644 D 205914 CDS YP_719288.1 113461219 4240575 complement(1192980..1194053) 1 NC_008309.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 1194053 metX 4240575 metX Haemophilus somnus 129PT homoserine O-acetyltransferase YP_719288.1 1192980 R 205914 CDS YP_719289.1 113461220 4240576 1194241..1194936 1 NC_008309.1 SanA protein 1194936 sanA 4240576 sanA Haemophilus somnus 129PT SanA protein YP_719289.1 1194241 D 205914 CDS YP_719290.1 113461221 4240578 1195690..1196661 1 NC_008309.1 sodium/calcium exchange protein 1196661 4240578 HS_1078 Haemophilus somnus 129PT sodium/calcium exchange protein YP_719290.1 1195690 D 205914 CDS YP_719291.1 113461222 4240579 complement(1196682..1197689) 1 NC_008309.1 permease 1197689 4240579 HS_1079 Haemophilus somnus 129PT permease YP_719291.1 1196682 R 205914 CDS YP_719292.1 113461223 4240580 complement(1197680..1198321) 1 NC_008309.1 hypothetical protein 1198321 4240580 HS_1080 Haemophilus somnus 129PT hypothetical protein YP_719292.1 1197680 R 205914 CDS YP_719293.1 113461224 4240581 1198553..1199023 1 NC_008309.1 ATPase 1199023 4240581 HS_1081 Haemophilus somnus 129PT ATPase YP_719293.1 1198553 D 205914 CDS YP_719294.1 113461225 4240582 1199027..1200229 1 NC_008309.1 N-acetylmuramoyl-L-alanine amidase 1200229 amiB 4240582 amiB Haemophilus somnus 129PT N-acetylmuramoyl-L-alanine amidase YP_719294.1 1199027 D 205914 CDS YP_719295.1 113461226 4240583 1200245..1202092 1 NC_008309.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1202092 mutL 4240583 mutL Haemophilus somnus 129PT DNA mismatch repair protein YP_719295.1 1200245 D 205914 CDS YP_719296.1 113461227 4240584 1202089..1203024 1 NC_008309.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1203024 miaA 4240584 miaA Haemophilus somnus 129PT tRNA delta(2)-isopentenylpyrophosphate transferase YP_719296.1 1202089 D 205914 CDS YP_719297.1 113461228 4240585 1203500..1214713 1 NC_008309.1 large adhesin 1214713 4240585 HS_1085 Haemophilus somnus 129PT large adhesin YP_719297.1 1203500 D 205914 CDS YP_719298.1 113461229 4240586 1214992..1216431 1 NC_008309.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1216431 pykA 4240586 pykA Haemophilus somnus 129PT pyruvate kinase YP_719298.1 1214992 D 205914 CDS YP_719299.1 113461230 4240587 1216722..1218578 1 NC_008309.1 peptidyl-prolyl cis-trans isomerase D 1218578 ppiD 4240587 ppiD Haemophilus somnus 129PT peptidyl-prolyl cis-trans isomerase D YP_719299.1 1216722 D 205914 CDS YP_719300.1 113461231 4240588 1218833..1219552 1 NC_008309.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1219552 rpsB 4240588 rpsB Haemophilus somnus 129PT 30S ribosomal protein S2 YP_719300.1 1218833 D 205914 CDS YP_719301.1 113461232 4240589 1219675..1220526 1 NC_008309.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1220526 tsf 4240589 tsf Haemophilus somnus 129PT elongation factor Ts YP_719301.1 1219675 D 205914 CDS YP_719302.1 113461233 4240590 complement(1220700..1221020) 1 NC_008309.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 1221020 trpR 4240590 trpR Haemophilus somnus 129PT Trp operon repressor YP_719302.1 1220700 R 205914 CDS YP_719303.1 113461234 4240591 complement(1221334..1222575) 1 NC_008309.1 involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT 1222575 4240591 HS_1091 Haemophilus somnus 129PT serine/threonine transporter SstT YP_719303.1 1221334 R 205914 CDS YP_719304.1 113461235 4240592 1222834..1223289 1 NC_008309.1 ImpA protein 1223289 impA 4240592 impA Haemophilus somnus 129PT ImpA protein YP_719304.1 1222834 D 205914 CDS YP_719305.1 113461236 4240593 complement(1223377..1224801) 1 NC_008309.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1224801 lpdA 4240593 lpdA Haemophilus somnus 129PT dihydrolipoamide dehydrogenase YP_719305.1 1223377 R 205914 CDS YP_719306.1 113461237 4240594 complement(1224888..1226645) 1 NC_008309.1 pyruvate dehydrogenase, E2 complex 1226645 aceF 4240594 aceF Haemophilus somnus 129PT pyruvate dehydrogenase, E2 complex YP_719306.1 1224888 R 205914 CDS YP_719307.1 113461238 4240595 complement(1226829..1229492) 1 NC_008309.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1229492 aceE 4240595 aceE Haemophilus somnus 129PT pyruvate dehydrogenase subunit E1 YP_719307.1 1226829 R 205914 CDS YP_719308.1 113461239 4240596 complement(1229787..1230287) 1 NC_008309.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 1230287 crr 4240596 crr Haemophilus somnus 129PT PTS system glucose-specific transporter subunit YP_719308.1 1229787 R 205914 CDS YP_719309.1 113461240 4240597 complement(1230350..1232077) 1 NC_008309.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 1232077 ptsI 4240597 ptsI Haemophilus somnus 129PT phosphoenolpyruvate-protein phosphotransferase YP_719309.1 1230350 R 205914 CDS YP_719310.1 113461241 4240598 complement(1232182..1232439) 1 NC_008309.1 phosphocarrier protein HPr 1232439 ptsH 4240598 ptsH Haemophilus somnus 129PT phosphocarrier protein HPr YP_719310.1 1232182 R 205914 CDS YP_719311.1 113461242 4240599 complement(1232662..1233714) 1 NC_008309.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1233714 engC 4240599 engC Haemophilus somnus 129PT ribosome-associated GTPase YP_719311.1 1232662 R 205914 CDS YP_719312.1 113461243 4240600 1233784..1234338 1 NC_008309.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 1234338 orn 4240600 orn Haemophilus somnus 129PT oligoribonuclease YP_719312.1 1233784 D 205914 CDS YP_719313.1 113461244 4240602 complement(1235376..1236674) 1 NC_008309.1 ammonium transporter 1236674 amtB 4240602 amtB Haemophilus somnus 129PT ammonium transporter YP_719313.1 1235376 R 205914 CDS YP_719314.1 113461245 4240603 complement(1237162..1238556) 1 NC_008309.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1238556 fumC 4240603 fumC Haemophilus somnus 129PT fumarate hydratase YP_719314.1 1237162 R 205914 CDS YP_719315.1 113461246 4240604 1238763..1239704 1 NC_008309.1 transcriptional regulatory protein 1239704 tyrR 4240604 tyrR Haemophilus somnus 129PT transcriptional regulatory protein YP_719315.1 1238763 D 205914 CDS YP_719316.1 113461247 4240605 complement(1239721..1241097) 1 NC_008309.1 GTP-binding protein HflX 1241097 hflX 4240605 hflX Haemophilus somnus 129PT GTP-binding protein HflX YP_719316.1 1239721 R 205914 CDS YP_719317.1 113461248 4240606 complement(1241100..1241390) 1 NC_008309.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 1241390 hfq 4240606 hfq Haemophilus somnus 129PT RNA-binding protein Hfq YP_719317.1 1241100 R 205914 CDS YP_719318.1 113461249 4240607 complement(1241597..1242967) 1 NC_008309.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 1242967 gor 4240607 gor Haemophilus somnus 129PT glutathione reductase YP_719318.1 1241597 R 205914 CDS YP_719319.1 113461250 4240608 complement(1243057..1243902) 1 NC_008309.1 hypothetical protein 1243902 4240608 HS_1107 Haemophilus somnus 129PT hypothetical protein YP_719319.1 1243057 R 205914 CDS YP_719320.1 113461251 4240609 complement(1243962..1246502) 1 NC_008309.1 penicillin-binding protein 1A 1246502 ponA 4240609 ponA Haemophilus somnus 129PT penicillin-binding protein 1A YP_719320.1 1243962 R 205914 CDS YP_719321.1 113461252 4240610 1246627..1247412 1 NC_008309.1 competence protein A 1247412 comA 4240610 comA Haemophilus somnus 129PT competence protein A YP_719321.1 1246627 D 205914 CDS YP_719322.1 113461253 4240611 1247416..1247955 1 NC_008309.1 competence protein B 1247955 comB 4240611 comB Haemophilus somnus 129PT competence protein B YP_719322.1 1247416 D 205914 CDS YP_719323.1 113461254 4240612 1247959..1248456 1 NC_008309.1 competence protein C 1248456 comC 4240612 comC Haemophilus somnus 129PT competence protein C YP_719323.1 1247959 D 205914 CDS YP_719324.1 113461255 4240613 1248472..1249605 1 NC_008309.1 competence protein E 1249605 comE 4240613 comE Haemophilus somnus 129PT competence protein E YP_719324.1 1248472 D 205914 CDS YP_719325.1 113461256 4240614 1249823..1250314 1 NC_008309.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 1250314 aroK 4240614 aroK Haemophilus somnus 129PT shikimate kinase YP_719325.1 1249823 D 205914 CDS YP_719326.1 113461257 4240615 1250334..1251422 1 NC_008309.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 1251422 aroB 4240615 aroB Haemophilus somnus 129PT 3-dehydroquinate synthase YP_719326.1 1250334 D 205914 CDS YP_719327.1 113461258 4240616 1251459..1252292 1 NC_008309.1 DNA adenine methylase Dam 1252292 dam 4240616 dam Haemophilus somnus 129PT DNA adenine methylase Dam YP_719327.1 1251459 D 205914 CDS YP_719328.1 113461259 4240617 complement(1252323..1252976) 1 NC_008309.1 transposase 1252976 tpn 4240617 tpn Haemophilus somnus 129PT transposase YP_719328.1 1252323 R 205914 CDS YP_719329.1 113461260 4240618 complement(1253061..1253972) 1 NC_008309.1 UDP-glucose pyrophosphorylase 1253972 galU 4240618 galU Haemophilus somnus 129PT UDP-glucose pyrophosphorylase YP_719329.1 1253061 R 205914 CDS YP_719330.1 113461261 4240619 complement(1254022..1255386) 1 NC_008309.1 phosphomannomutase 1255386 manB 4240619 manB Haemophilus somnus 129PT phosphomannomutase YP_719330.1 1254022 R 205914 CDS YP_719331.1 113461262 4240620 complement(1255499..1255684) 1 NC_008309.1 hypothetical protein 1255684 4240620 HS_1119 Haemophilus somnus 129PT hypothetical protein YP_719331.1 1255499 R 205914 CDS YP_719332.1 113461263 4240621 complement(1255786..1258410) 1 NC_008309.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1258410 alaS 4240621 alaS Haemophilus somnus 129PT alanyl-tRNA synthetase YP_719332.1 1255786 R 205914 CDS YP_719333.1 113461264 4240622 complement(1258602..1259027) 1 NC_008309.1 universal stress protein A 1259027 uspA 4240622 uspA Haemophilus somnus 129PT universal stress protein A YP_719333.1 1258602 R 205914 CDS YP_719334.1 113461265 4240623 1259016..1260005 1 NC_008309.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase 1260005 mazG 4240623 mazG Haemophilus somnus 129PT nucleoside triphosphate pyrophosphohydrolase YP_719334.1 1259016 D 205914 CDS YP_719335.1 113461266 4240624 1260010..1262202 1 NC_008309.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1262202 priA 4240624 priA Haemophilus somnus 129PT primosome assembly protein PriA YP_719335.1 1260010 D 205914 CDS YP_719336.1 113461267 4240625 1262274..1262948 1 NC_008309.1 cell division protein FtsN 1262948 4240625 HS_1124 Haemophilus somnus 129PT cell division protein FtsN YP_719336.1 1262274 D 205914 CDS YP_719337.1 113461268 4240626 complement(1262974..1263462) 1 NC_008309.1 rod shape-determining protein MreD 1263462 mreD 4240626 mreD Haemophilus somnus 129PT rod shape-determining protein MreD YP_719337.1 1262974 R 205914 CDS YP_719338.1 113461269 4240627 complement(1263462..1264517) 1 NC_008309.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1264517 mreC 4240627 mreC Haemophilus somnus 129PT rod shape-determining protein MreC YP_719338.1 1263462 R 205914 CDS YP_719339.1 113461270 4240628 complement(1264599..1265654) 1 NC_008309.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1265654 mreB 4240628 mreB Haemophilus somnus 129PT rod shape-determining protein MreB YP_719339.1 1264599 R 205914 CDS YP_719340.1 113461271 4240629 complement(1265826..1268657) 1 NC_008309.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 1268657 uvrA 4240629 uvrA Haemophilus somnus 129PT excinuclease ABC subunit A YP_719340.1 1265826 R 205914 CDS YP_719341.1 113461272 4240630 1268836..1269300 1 NC_008309.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1269300 ssb 4240630 ssb Haemophilus somnus 129PT single-stranded DNA-binding protein YP_719341.1 1268836 D 205914 CDS YP_719342.1 113461273 4240631 complement(1269387..1270271) 1 NC_008309.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 1270271 metF 4240631 metF Haemophilus somnus 129PT 5,10-methylenetetrahydrofolate reductase YP_719342.1 1269387 R 205914 CDS YP_719343.1 113461274 4240632 complement(1270487..1271005) 1 NC_008309.1 hypothetical protein 1271005 4240632 HS_1131 Haemophilus somnus 129PT hypothetical protein YP_719343.1 1270487 R 205914 CDS YP_719344.1 113461275 4240633 complement(1271025..1272080) 1 NC_008309.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1272080 nagZ 4240633 nagZ Haemophilus somnus 129PT beta-hexosaminidase YP_719344.1 1271025 R 205914 CDS YP_719345.1 113461276 4240634 complement(1272087..1272443) 1 NC_008309.1 hypothetical protein 1272443 4240634 HS_1133 Haemophilus somnus 129PT hypothetical protein YP_719345.1 1272087 R 205914 CDS YP_719346.1 113461277 4240635 complement(1272443..1272793) 1 NC_008309.1 HIT-like protein 1272793 4240635 HS_1134 Haemophilus somnus 129PT HIT-like protein YP_719346.1 1272443 R 205914 CDS YP_719347.1 113461278 4240636 1273061..1273888 1 NC_008309.1 formate transporter 1273888 focA 4240636 focA Haemophilus somnus 129PT formate transporter YP_719347.1 1273061 D 205914 CDS YP_719348.1 113461279 4240637 1273983..1276307 1 NC_008309.1 formate acetyltransferase 1276307 pflB 4240637 pflB Haemophilus somnus 129PT formate acetyltransferase YP_719348.1 1273983 D 205914 CDS YP_719349.1 113461280 4240638 1276442..1276900 1 NC_008309.1 hypothetical protein 1276900 4240638 HS_1137 Haemophilus somnus 129PT hypothetical protein YP_719349.1 1276442 D 205914 CDS YP_719350.1 113461281 4240639 1277023..1278126 1 NC_008309.1 hypothetical protein 1278126 4240639 HS_1138 Haemophilus somnus 129PT hypothetical protein YP_719350.1 1277023 D 205914 CDS YP_719351.1 113461282 4240640 1278111..1278815 1 NC_008309.1 hypothetical protein 1278815 4240640 HS_1139 Haemophilus somnus 129PT hypothetical protein YP_719351.1 1278111 D 205914 CDS YP_719352.1 113461283 4240641 complement(1279077..1279868) 1 NC_008309.1 galactitol utilization operon repressor 1279868 gatR 4240641 gatR Haemophilus somnus 129PT galactitol utilization operon repressor YP_719352.1 1279077 R 205914 CDS YP_719353.1 113461284 4240642 complement(1279962..1281005) 1 NC_008309.1 Zn-dependent; NAD(P)-binding; catalyzes the formation of tagatose-6-phosphate from galactitol-1-phosphate; galactitol-1-phosphate dehydrogenase 1281005 gatD 4240642 gatD Haemophilus somnus 129PT galactitol-1-phosphate dehydrogenase YP_719353.1 1279962 R 205914 CDS YP_719354.1 113461285 4240643 complement(1281019..1282377) 1 NC_008309.1 PTS system, galactitol-specific IIC component 1282377 gatC 4240643 gatC Haemophilus somnus 129PT PTS system, galactitol-specific IIC component YP_719354.1 1281019 R 205914 CDS YP_719355.1 113461286 4240644 complement(1282382..1282666) 1 NC_008309.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIB 1282666 gatB 4240644 gatB Haemophilus somnus 129PT PTS system galactitol-specific transporter subunit IIB YP_719355.1 1282382 R 205914 CDS YP_719356.1 113461287 4240645 complement(1282690..1283136) 1 NC_008309.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system galactitol-specific transporter subunit IIA 1283136 gatA 4240645 gatA Haemophilus somnus 129PT PTS system galactitol-specific transporter subunit IIA YP_719356.1 1282690 R 205914 CDS YP_719357.1 113461288 4240646 complement(1283149..1284414) 1 NC_008309.1 tagatose-bisphosphate aldolase noncatalytic subunit 1284414 gatZ 4240646 gatZ Haemophilus somnus 129PT tagatose-bisphosphate aldolase noncatalytic subunit YP_719357.1 1283149 R 205914 CDS YP_719358.1 113461289 4240647 complement(1284428..1285381) 1 NC_008309.1 catalyzes the reversible reaction of dihydroxyacetone phosphate with glyceraldehyde 3-phosphate to produce tagatose 1,6-bisphosphate; in Streptococcus pyogenes there are two paralogs of tagatose-bisphosphate aldolase, encoded by lacD1 and lacD2; expression of lacD1 is highly regulated by environmental conditions while lacD2 specializes in an efficient utilization of carbohydrate sources; tagatose 1,6-diphosphate aldolase 1285381 lacD 4240647 lacD Haemophilus somnus 129PT tagatose 1,6-diphosphate aldolase YP_719358.1 1284428 R 205914 CDS YP_719359.1 113461290 4240648 1285647..1286387 1 NC_008309.1 activates pyruvate formate-lyase 1 under anaerobic conditions; pyruvate formate lyase-activating enzyme 1 1286387 pflA 4240648 pflA Haemophilus somnus 129PT pyruvate formate lyase-activating enzyme 1 YP_719359.1 1285647 D 205914 CDS YP_719360.1 113461291 4240649 1286516..1287469 1 NC_008309.1 thioredoxin reductase 1287469 trxB 4240649 trxB Haemophilus somnus 129PT thioredoxin reductase YP_719360.1 1286516 D 205914 CDS YP_719361.1 113461292 4240650 1287535..1289298 1 NC_008309.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1289298 cydD 4240650 cydD Haemophilus somnus 129PT cysteine/glutathione ABC transporter membrane/ATP-binding component YP_719361.1 1287535 D 205914 CDS YP_719362.2 161486692 4240651 1289298..1291028 1 NC_008309.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding component 1291028 cydC 4240651 cydC Haemophilus somnus 129PT cysteine/glutathione ABC transporter membrane/ATP-binding component YP_719362.2 1289298 D 205914 CDS YP_719363.1 113461294 4240652 1291133..1291474 1 NC_008309.1 hypothetical protein 1291474 4240652 HS_1151 Haemophilus somnus 129PT hypothetical protein YP_719363.1 1291133 D 205914 CDS YP_719364.1 113461295 4240653 1291766..1292638 1 NC_008309.1 hypothetical protein 1292638 4240653 HS_1152 Haemophilus somnus 129PT hypothetical protein YP_719364.1 1291766 D 205914 CDS YP_719365.1 113461296 4240654 1292729..1293295 1 NC_008309.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1293295 pgsA 4240654 pgsA Haemophilus somnus 129PT CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_719365.1 1292729 D 205914 CDS YP_719366.1 113461297 4240655 1293755..1304419 1 NC_008309.1 large adhesin 1304419 4240655 HS_1154 Haemophilus somnus 129PT large adhesin YP_719366.1 1293755 D 205914 CDS YP_719367.1 113461298 4240656 complement(1304541..1305965) 1 NC_008309.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1305965 4240656 HS_1155 Haemophilus somnus 129PT (dimethylallyl)adenosine tRNA methylthiotransferase YP_719367.1 1304541 R 205914 CDS YP_719368.1 113461299 4240657 1306116..1307282 1 NC_008309.1 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1307282 ubiF 4240657 ubiF Haemophilus somnus 129PT 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase YP_719368.1 1306116 D 205914 CDS YP_719369.1 113461300 4240658 1307441..1308559 1 NC_008309.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase 1308559 potA 4240658 potA Haemophilus somnus 129PT putrescine/spermidine ABC transporter ATPase YP_719369.1 1307441 D 205914 CDS YP_719370.1 113461301 4240659 1308543..1309403 1 NC_008309.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1309403 potB 4240659 potB Haemophilus somnus 129PT spermidine/putrescine ABC transporter membrane protein YP_719370.1 1308543 D 205914 CDS YP_719371.1 113461302 4240660 1309403..1310170 1 NC_008309.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1310170 potC 4240660 potC Haemophilus somnus 129PT spermidine/putrescine ABC transporter membrane protein YP_719371.1 1309403 D 205914 CDS YP_719372.1 113461303 4240661 1310334..1311419 1 NC_008309.1 spermidine/putrescine-binding periplasmic protein 1311419 potD 4240661 potD Haemophilus somnus 129PT spermidine/putrescine-binding periplasmic protein YP_719372.1 1310334 D 205914 CDS YP_719373.1 113461304 4240662 complement(1311475..1314906) 1 NC_008309.1 transcription-repair coupling factor 1314906 mfd 4240662 mfd Haemophilus somnus 129PT transcription-repair coupling factor YP_719373.1 1311475 R 205914 CDS YP_719374.1 113461305 4240663 complement(1314912..1315628) 1 NC_008309.1 Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 1315628 ubiG 4240663 ubiG Haemophilus somnus 129PT 3-demethylubiquinone-9 3-methyltransferase YP_719374.1 1314912 R 205914 CDS YP_719375.1 113461306 4240664 1315768..1318413 1 NC_008309.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1318413 gyrA 4240664 gyrA Haemophilus somnus 129PT DNA gyrase subunit A YP_719375.1 1315768 D 205914 CDS YP_719376.1 113461307 4240665 1318464..1318655 1 NC_008309.1 hypothetical protein 1318655 4240665 HS_1164 Haemophilus somnus 129PT hypothetical protein YP_719376.1 1318464 D 205914 CDS YP_719377.1 113461308 4240666 1318777..1319103 1 NC_008309.1 alkylphosphonate uptake protein 1319103 phnA 4240666 phnA Haemophilus somnus 129PT alkylphosphonate uptake protein YP_719377.1 1318777 D 205914 CDS YP_719378.1 113461309 4240667 1319140..1320357 1 NC_008309.1 tyrosine-specific transport protein 1320357 tyrP 4240667 tyrP Haemophilus somnus 129PT tyrosine-specific transport protein YP_719378.1 1319140 D 205914 CDS YP_719379.1 113461310 4240668 complement(1320468..1321742) 1 NC_008309.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1321742 murZ 4240668 murZ Haemophilus somnus 129PT UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_719379.1 1320468 R 205914 CDS YP_719380.1 113461311 4240669 complement(1321762..1322013) 1 NC_008309.1 morphology/transcription regulator BolA family protein 1322013 4240669 HS_1168 Haemophilus somnus 129PT morphology/transcription regulator BolA family protein YP_719380.1 1321762 R 205914 CDS YP_719381.1 113461312 4240670 complement(1322026..1322358) 1 NC_008309.1 hypothetical protein 1322358 4240670 HS_1169 Haemophilus somnus 129PT hypothetical protein YP_719381.1 1322026 R 205914 CDS YP_719382.1 113461313 4240671 complement(1322362..1322988) 1 NC_008309.1 hypothetical protein 1322988 4240671 HS_1170 Haemophilus somnus 129PT hypothetical protein YP_719382.1 1322362 R 205914 CDS YP_719383.1 113461314 4240672 complement(1323024..1323530) 1 NC_008309.1 hypothetical protein 1323530 4240672 HS_1171 Haemophilus somnus 129PT hypothetical protein YP_719383.1 1323024 R 205914 CDS YP_719384.1 113461315 4240673 complement(1323562..1324347) 1 NC_008309.1 ABC transporter permease 1324347 4240673 HS_1172 Haemophilus somnus 129PT ABC transporter permease YP_719384.1 1323562 R 205914 CDS YP_719385.1 113461316 4240674 complement(1324344..1325138) 1 NC_008309.1 ABC transporter ATP-binding protein 1325138 4240674 HS_1173 Haemophilus somnus 129PT ABC transporter ATP-binding protein YP_719385.1 1324344 R 205914 CDS YP_719386.1 113461317 4240675 1325313..1325933 1 NC_008309.1 hypothetical protein 1325933 4240675 HS_1174 Haemophilus somnus 129PT hypothetical protein YP_719386.1 1325313 D 205914 CDS YP_719387.1 113461318 4240676 1325914..1326432 1 NC_008309.1 hypothetical protein 1326432 4240676 HS_1175 Haemophilus somnus 129PT hypothetical protein YP_719387.1 1325914 D 205914 CDS YP_719388.1 113461319 4240677 1326447..1327172 1 NC_008309.1 ABC transporter ATP-binding protein 1327172 4240677 HS_1176 Haemophilus somnus 129PT ABC transporter ATP-binding protein YP_719388.1 1326447 D 205914 CDS YP_719389.1 113461320 4240678 1327175..1327735 1 NC_008309.1 nitrogen regulatory IIA protein 1327735 ptsN 4240678 ptsN Haemophilus somnus 129PT nitrogen regulatory IIA protein YP_719389.1 1327175 D 205914 CDS YP_719390.1 113461321 4240679 1327738..1328598 1 NC_008309.1 hypothetical protein 1328598 4240679 HS_1178 Haemophilus somnus 129PT hypothetical protein YP_719390.1 1327738 D 205914 CDS YP_719391.1 113461322 4240680 complement(1328634..1330685) 1 NC_008309.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1330685 metG 4240680 metG Haemophilus somnus 129PT methionyl-tRNA synthetase YP_719391.1 1328634 R 205914 CDS YP_719392.1 113461323 4240681 1330827..1331948 1 NC_008309.1 ATPase 1331948 mrp 4240681 mrp Haemophilus somnus 129PT ATPase YP_719392.1 1330827 D 205914 CDS YP_719393.1 113461324 4240682 complement(1331963..1332673) 1 NC_008309.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease 1332673 modB 4240682 modB Haemophilus somnus 129PT molybdate ABC transporter permease YP_719393.1 1331963 R 205914 CDS YP_719394.1 113461325 4240683 complement(1332691..1333455) 1 NC_008309.1 molybdenum ABC transporter periplasmic binding protein 1333455 modA 4240683 modA Haemophilus somnus 129PT molybdenum ABC transporter periplasmic binding protein YP_719394.1 1332691 R 205914 CDS YP_719395.1 113461326 4240684 complement(1333477..1334175) 1 NC_008309.1 permease 1334175 4240684 HS_1183 Haemophilus somnus 129PT permease YP_719395.1 1333477 R 205914 CDS YP_719396.1 113461327 4240685 1334333..1335121 1 NC_008309.1 hypothetical protein 1335121 4240685 HS_1184 Haemophilus somnus 129PT hypothetical protein YP_719396.1 1334333 D 205914 CDS YP_719397.1 113461328 4240686 1335892..1336611 1 NC_008309.1 hypothetical protein 1336611 4240686 HS_1185 Haemophilus somnus 129PT hypothetical protein YP_719397.1 1335892 D 205914 CDS YP_719398.1 113461329 4240687 complement(1336965..1339676) 1 NC_008309.1 DNA translocase FtsK 1339676 ftsK 4240687 ftsK Haemophilus somnus 129PT DNA translocase FtsK YP_719398.1 1336965 R 205914 CDS YP_719399.1 113461330 4240688 complement(1339678..1340154) 1 NC_008309.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 1340154 lrp 4240688 lrp Haemophilus somnus 129PT leucine-responsive transcriptional regulator YP_719399.1 1339678 R 205914 CDS YP_719400.1 113461331 4240689 complement(1340256..1341632) 1 NC_008309.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 1341632 radA 4240689 radA Haemophilus somnus 129PT DNA repair protein RadA YP_719400.1 1340256 R 205914 CDS YP_719401.1 113461332 4240690 complement(1341642..1342685) 1 NC_008309.1 hypothetical protein 1342685 4240690 HS_1189 Haemophilus somnus 129PT hypothetical protein YP_719401.1 1341642 R 205914 CDS YP_719402.1 113461333 4240691 1342828..1343508 1 NC_008309.1 phosphate transport regulator 1343508 4240691 HS_1190 Haemophilus somnus 129PT phosphate transport regulator YP_719402.1 1342828 D 205914 CDS YP_719403.1 113461334 4240692 1343535..1344797 1 NC_008309.1 possible PHO4 family; phosphate permease 1344797 4240692 HS_1191 Haemophilus somnus 129PT phosphate permease YP_719403.1 1343535 D 205914 CDS YP_719404.1 113461335 4240693 1344722..1345513 1 NC_008309.1 hypothetical protein 1345513 4240693 HS_1192 Haemophilus somnus 129PT hypothetical protein YP_719404.1 1344722 D 205914 CDS YP_719405.1 113461336 4240694 1345518..1346771 1 NC_008309.1 tRNA nucleotidyltransferase 1346771 cca 4240694 cca Haemophilus somnus 129PT tRNA nucleotidyltransferase YP_719405.1 1345518 D 205914 CDS YP_719406.1 113461337 4240695 1346950..1348857 1 NC_008309.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1348857 dnaK 4240695 dnaK Haemophilus somnus 129PT molecular chaperone DnaK YP_719406.1 1346950 D 205914 CDS YP_719407.1 113461338 4240696 1348955..1350076 1 NC_008309.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1350076 dnaJ 4240696 dnaJ Haemophilus somnus 129PT chaperone protein DnaJ YP_719407.1 1348955 D 205914 CDS YP_719408.1 113461339 4240697 1350360..1352630 1 NC_008309.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1352630 nrdA 4240697 nrdA Haemophilus somnus 129PT ribonucleotide-diphosphate reductase subunit alpha YP_719408.1 1350360 D 205914 CDS YP_719409.1 113461340 4240698 complement(1352713..1353252) 1 NC_008309.1 fimbrial biogenesis and twitching motility protein 1353252 pilF 4240698 pilF Haemophilus somnus 129PT fimbrial biogenesis and twitching motility protein YP_719409.1 1352713 R 205914 CDS YP_719410.1 113461341 4240699 complement(1353283..1354380) 1 NC_008309.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1354380 4240699 HS_1198 Haemophilus somnus 129PT ribosomal RNA large subunit methyltransferase N YP_719410.1 1353283 R 205914 CDS YP_719411.1 113461342 4240700 1354473..1354667 1 NC_008309.1 hypothetical protein 1354667 4240700 HS_1199 Haemophilus somnus 129PT hypothetical protein YP_719411.1 1354473 D 205914 CDS YP_719412.1 113461343 4240701 complement(1354654..1356657) 1 NC_008309.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 1356657 dnaX 4240701 dnaX Haemophilus somnus 129PT DNA polymerase III subunits gamma and tau YP_719412.1 1354654 R 205914 CDS YP_719413.1 113461344 4240702 complement(1356688..1357212) 1 NC_008309.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1357212 apt 4240702 apt Haemophilus somnus 129PT adenine phosphoribosyltransferase YP_719413.1 1356688 R 205914 CDS YP_719414.1 113461345 4240703 complement(1357298..1358251) 1 NC_008309.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1358251 msbB 4240703 msbB Haemophilus somnus 129PT lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase YP_719414.1 1357298 R 205914 CDS YP_719415.1 113461346 4240704 complement(1358275..1359048) 1 NC_008309.1 permease 1359048 4240704 HS_1203 Haemophilus somnus 129PT permease YP_719415.1 1358275 R 205914 CDS YP_719416.1 113461347 4240705 complement(1359057..1359896) 1 NC_008309.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 1359896 mepA 4240705 mepA Haemophilus somnus 129PT penicillin-insensitive murein endopeptidase YP_719416.1 1359057 R 205914 CDS YP_719417.1 113461348 4240706 complement(1359929..1361011) 1 NC_008309.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1361011 aroC 4240706 aroC Haemophilus somnus 129PT chorismate synthase YP_719417.1 1359929 R 205914 CDS YP_719418.1 113461349 4240707 complement(1361027..1364323) 1 NC_008309.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 1364323 4240707 HS_1206 Haemophilus somnus 129PT potassium efflux protein KefA YP_719418.1 1361027 R 205914 CDS YP_719419.1 113461350 4240708 complement(1364326..1365732) 1 NC_008309.1 O-succinylbenzoic acid--CoA ligase 1365732 menE 4240708 menE Haemophilus somnus 129PT O-succinylbenzoic acid--CoA ligase YP_719419.1 1364326 R 205914 CDS YP_719420.1 113461351 4240709 complement(1365735..1366349) 1 NC_008309.1 negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 1366349 seqA 4240709 seqA Haemophilus somnus 129PT replication initiation regulator SeqA YP_719420.1 1365735 R 205914 CDS YP_719421.1 113461352 4240710 1366299..1367234 1 NC_008309.1 esterase/lipase 1367234 4240710 HS_1209 Haemophilus somnus 129PT esterase/lipase YP_719421.1 1366299 D 205914 CDS YP_719422.1 113461353 4240711 1367656..1368180 1 NC_008309.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1368180 fldA 4240711 fldA Haemophilus somnus 129PT flavodoxin FldA YP_719422.1 1367656 D 205914 CDS YP_719423.1 113461354 4240712 1368197..1368643 1 NC_008309.1 ferric uptake regulation protein 1368643 fur 4240712 fur Haemophilus somnus 129PT ferric uptake regulation protein YP_719423.1 1368197 D 205914 CDS YP_719424.1 113461355 4240713 complement(1368815..1370092) 1 NC_008309.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1370092 thrC 4240713 thrC Haemophilus somnus 129PT threonine synthase YP_719424.1 1368815 R 205914 CDS YP_719425.1 113461356 4240714 complement(1370105..1371049) 1 NC_008309.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1371049 thrB 4240714 thrB Haemophilus somnus 129PT homoserine kinase YP_719425.1 1370105 R 205914 CDS YP_719426.1 113461357 4240715 complement(1371062..1373512) 1 NC_008309.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1373512 thrA 4240715 thrA Haemophilus somnus 129PT bifunctional aspartokinase I/homoserine dehydrogenase I YP_719426.1 1371062 R 205914 CDS YP_719427.1 113461358 4240716 1373841..1374536 1 NC_008309.1 hypothetical protein 1374536 4240716 HS_1215 Haemophilus somnus 129PT hypothetical protein YP_719427.1 1373841 D 205914 CDS YP_719428.1 113461359 4240717 complement(1374589..1375935) 1 NC_008309.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1375935 xseA 4240717 xseA Haemophilus somnus 129PT exodeoxyribonuclease VII large subunit YP_719428.1 1374589 R 205914 CDS YP_719429.1 113461360 4240718 complement(1376111..1376770) 1 NC_008309.1 hypothetical protein 1376770 4240718 HS_1217 Haemophilus somnus 129PT hypothetical protein YP_719429.1 1376111 R 205914 CDS YP_719430.1 113461361 4240719 complement(1376885..1379845) 1 NC_008309.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1379845 glnE 4240719 glnE Haemophilus somnus 129PT bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase YP_719430.1 1376885 R 205914 CDS YP_719431.1 113461362 4240720 1379985..1380269 1 NC_008309.1 hypothetical protein 1380269 4240720 HS_1219 Haemophilus somnus 129PT hypothetical protein YP_719431.1 1379985 D 205914 CDS YP_719432.1 113461363 4240721 complement(1380266..1381126) 1 NC_008309.1 integrase 1381126 int 4240721 int Haemophilus somnus 129PT integrase YP_719432.1 1380266 R 205914 CDS YP_719433.1 113461364 4240724 1381844..1382692 1 NC_008309.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 1382692 folD 4240724 folD Haemophilus somnus 129PT bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_719433.1 1381844 D 205914 CDS YP_719434.1 113461365 4240725 complement(1382730..1383455) 1 NC_008309.1 SAM-dependent methyltransferase 1383455 4240725 HS_1222 Haemophilus somnus 129PT SAM-dependent methyltransferase YP_719434.1 1382730 R 205914 CDS YP_719435.1 113461366 4240726 1383619..1385376 1 NC_008309.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1385376 aspS 4240726 aspS Haemophilus somnus 129PT aspartyl-tRNA synthetase YP_719435.1 1383619 D 205914 CDS YP_719436.1 113461367 4240727 complement(1385418..1385618) 1 NC_008309.1 hypothetical protein 1385618 4240727 HS_1224 Haemophilus somnus 129PT hypothetical protein YP_719436.1 1385418 R 205914 CDS YP_719437.1 113461368 4240728 complement(1385764..1386207) 1 NC_008309.1 flavin:NADH reductase 1386207 ycdH 4240728 ycdH Haemophilus somnus 129PT flavin:NADH reductase YP_719437.1 1385764 R 205914 CDS YP_719438.1 113461369 4240729 complement(1386244..1387275) 1 NC_008309.1 catalyzes the formation of tetrahydropteroyl-L-glutamate and methionine from L-homocysteine and 5-methyltetrahydropteroyltri-L-glutamate; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1387275 metE 4240729 metE Haemophilus somnus 129PT 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_719438.1 1386244 R 205914 CDS YP_719439.1 113461370 4240730 complement(1387355..1388335) 1 NC_008309.1 hypothetical protein 1388335 4240730 HS_1227 Haemophilus somnus 129PT hypothetical protein YP_719439.1 1387355 R 205914 CDS YP_719440.1 113461371 4240731 complement(1388586..1389104) 1 NC_008309.1 integrase 1389104 int 4240731 int Haemophilus somnus 129PT integrase YP_719440.1 1388586 R 205914 CDS YP_719441.1 113461372 4240740 1395605..1396903 1 NC_008309.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1396903 hemL 4240740 hemL Haemophilus somnus 129PT glutamate-1-semialdehyde aminotransferase YP_719441.1 1395605 D 205914 CDS YP_719442.1 113461373 4240741 complement(1397066..1397677) 1 NC_008309.1 hypothetical protein 1397677 4240741 HS_1230 Haemophilus somnus 129PT hypothetical protein YP_719442.1 1397066 R 205914 CDS YP_719443.1 113461374 4240742 complement(1397760..1398029) 1 NC_008309.1 hypothetical protein 1398029 4240742 HS_1231 Haemophilus somnus 129PT hypothetical protein YP_719443.1 1397760 R 205914 CDS YP_719444.1 113461375 4240743 complement(1398029..1398940) 1 NC_008309.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 1398940 glyQ 4240743 glyQ Haemophilus somnus 129PT glycyl-tRNA synthetase subunit alpha YP_719444.1 1398029 R 205914 CDS YP_719445.1 113461376 4240744 complement(1399053..1399679) 1 NC_008309.1 hypothetical protein 1399679 4240744 HS_1233 Haemophilus somnus 129PT hypothetical protein YP_719445.1 1399053 R 205914 CDS YP_719446.1 113461377 4240745 complement(1400065..1413645) 1 NC_008309.1 large adhesin 1413645 4240745 HS_1234 Haemophilus somnus 129PT large adhesin YP_719446.1 1400065 R 205914 CDS YP_719447.1 113461378 4240746 complement(1414343..1416130) 1 NC_008309.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 1416130 rpoD 4240746 rpoD Haemophilus somnus 129PT RNA polymerase sigma factor RpoD YP_719447.1 1414343 R 205914 CDS YP_719448.1 113461379 4240747 complement(1416275..1418029) 1 NC_008309.1 synthesizes RNA primers at the replication forks; DNA primase 1418029 dnaG 4240747 dnaG Haemophilus somnus 129PT DNA primase YP_719448.1 1416275 R 205914 CDS YP_719449.1 113461380 4240748 complement(1418190..1418405) 1 NC_008309.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1418405 rpsU 4240748 rpsU Haemophilus somnus 129PT 30S ribosomal protein S21 YP_719449.1 1418190 R 205914 CDS YP_719450.1 113461381 4240749 complement(1418590..1419171) 1 NC_008309.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 1419171 gmhA 4240749 gmhA Haemophilus somnus 129PT phosphoheptose isomerase YP_719450.1 1418590 R 205914 CDS YP_719451.1 113461382 4240750 complement(1419202..1420104) 1 NC_008309.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1420104 era 4240750 era Haemophilus somnus 129PT GTP-binding protein Era YP_719451.1 1419202 R 205914 CDS YP_719452.1 113461383 4240751 complement(1420157..1420840) 1 NC_008309.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1420840 rnc 4240751 rnc Haemophilus somnus 129PT ribonuclease III YP_719452.1 1420157 R 205914 CDS YP_719453.1 113461384 4240752 complement(1421035..1422066) 1 NC_008309.1 signal peptidase I 1422066 lepB 4240752 lepB Haemophilus somnus 129PT signal peptidase I YP_719453.1 1421035 R 205914 CDS YP_719454.1 113461385 4240753 complement(1422077..1423873) 1 NC_008309.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1423873 lepA 4240753 lepA Haemophilus somnus 129PT GTP-binding protein LepA YP_719454.1 1422077 R 205914 CDS YP_719455.1 113461386 4240754 complement(1424054..1425319) 1 NC_008309.1 M20/M25/M40 family peptidase 1425319 4240754 HS_1243 Haemophilus somnus 129PT M20/M25/M40 family peptidase YP_719455.1 1424054 R 205914 CDS YP_719456.1 113461387 4240755 complement(1425399..1426691) 1 NC_008309.1 C4-dicarboxylate ABC transporter permease 1426691 4240755 HS_1244 Haemophilus somnus 129PT C4-dicarboxylate ABC transporter permease YP_719456.1 1425399 R 205914 CDS YP_719457.1 113461388 4240756 complement(1426702..1427406) 1 NC_008309.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1427406 pepE 4240756 pepE Haemophilus somnus 129PT peptidase E YP_719457.1 1426702 R 205914 CDS YP_719458.1 113461389 4240757 1427713..1428369 1 NC_008309.1 hypothetical protein 1428369 4240757 HS_1246 Haemophilus somnus 129PT hypothetical protein YP_719458.1 1427713 D 205914 CDS YP_719459.1 113461390 4240758 1428263..1430725 1 NC_008309.1 autotransporter protein YapE 1430725 4240758 HS_1247 Haemophilus somnus 129PT autotransporter protein YapE YP_719459.1 1428263 D 205914 CDS YP_719460.1 113461391 4240759 complement(1430933..1431940) 1 NC_008309.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 1431940 fbp 4240759 fbp Haemophilus somnus 129PT fructose-1,6-bisphosphatase YP_719460.1 1430933 R 205914 CDS YP_719461.1 113461392 4240760 1432081..1433457 1 NC_008309.1 UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl- medo-diaminopimelate 1433457 mpl 4240760 mpl Haemophilus somnus 129PT UDP-N-acetylmuramate:L-alanyl-gamma-d-glutamayl- medo-diaminopimelate YP_719461.1 1432081 D 205914 CDS YP_719462.1 113461393 4240761 complement(1433554..1434069) 1 NC_008309.1 Acts as a repressor of the mtlAD operon; mannitol repressor protein 1434069 mtlR 4240761 mtlR Haemophilus somnus 129PT mannitol repressor protein YP_719462.1 1433554 R 205914 CDS YP_719463.1 113461394 4240762 complement(1434151..1435302) 1 NC_008309.1 mannitol-1-phosphate 5-dehydrogenase 1435302 mtlD 4240762 mtlD Haemophilus somnus 129PT mannitol-1-phosphate 5-dehydrogenase YP_719463.1 1434151 R 205914 CDS YP_719464.1 113461395 4240763 complement(1435375..1437252) 1 NC_008309.1 mannitol-specific IIABC component, PTS system 1437252 mtlA 4240763 mtlA Haemophilus somnus 129PT mannitol-specific IIABC component, PTS system YP_719464.1 1435375 R 205914 CDS YP_719465.1 113461396 4240764 1437618..1438526 1 NC_008309.1 catalyzes phosphorylation of fructose; cytosolic enzyme; fructokinase 1438526 4240764 HS_1253 Haemophilus somnus 129PT fructokinase YP_719465.1 1437618 D 205914 CDS YP_719466.2 161486691 4240765 1438800..1439891 1 NC_008309.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 1439891 mltA 4240765 mltA Haemophilus somnus 129PT murein transglycosylase A YP_719466.2 1438800 D 205914 CDS YP_719467.1 113461398 4240766 1439891..1440658 1 NC_008309.1 hypothetical protein 1440658 4240766 HS_1255 Haemophilus somnus 129PT hypothetical protein YP_719467.1 1439891 D 205914 CDS YP_719468.1 113461399 4240767 1440751..1441869 1 NC_008309.1 involved in transport of zinc(II) with ZnuA and C; high-affinity zinc transporter periplasmic component 1441869 znuA 4240767 znuA Haemophilus somnus 129PT high-affinity zinc transporter periplasmic component YP_719468.1 1440751 D 205914 CDS YP_719469.1 113461400 4240768 1442591..1443502 1 NC_008309.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1443502 cdd 4240768 cdd Haemophilus somnus 129PT cytidine deaminase YP_719469.1 1442591 D 205914 CDS YP_719470.1 113461401 4240769 1443533..1444342 1 NC_008309.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1444342 truA 4240769 truA Haemophilus somnus 129PT tRNA pseudouridine synthase A YP_719470.1 1443533 D 205914 CDS YP_719471.1 113461402 4240770 complement(1444398..1447244) 1 NC_008309.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1447244 valS 4240770 valS Haemophilus somnus 129PT valyl-tRNA synthetase YP_719471.1 1444398 R 205914 CDS YP_719472.1 113461403 4240771 complement(1447281..1448399) 1 NC_008309.1 hypothetical protein 1448399 4240771 HS_1260 Haemophilus somnus 129PT hypothetical protein YP_719472.1 1447281 R 205914 CDS YP_719473.1 113461404 4240772 complement(1448680..1448874) 1 NC_008309.1 hypothetical protein 1448874 4240772 HS_1261 Haemophilus somnus 129PT hypothetical protein YP_719473.1 1448680 R 205914 CDS YP_719474.1 113461405 4240773 complement(1448876..1449625) 1 NC_008309.1 hypothetical protein 1449625 4240773 HS_1262 Haemophilus somnus 129PT hypothetical protein YP_719474.1 1448876 R 205914 CDS YP_719475.1 113461406 4240774 complement(1449789..1450244) 1 NC_008309.1 hypothetical protein 1450244 4240774 HS_1263 Haemophilus somnus 129PT hypothetical protein YP_719475.1 1449789 R 205914 CDS YP_719476.1 113461407 4240775 complement(1450266..1450709) 1 NC_008309.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 1450709 holC 4240775 holC Haemophilus somnus 129PT DNA polymerase III subunit chi YP_719476.1 1450266 R 205914 CDS YP_719477.1 113461408 4240776 complement(1450879..1451508) 1 NC_008309.1 outer membrane protein precursor 1451508 ompW 4240776 ompW Haemophilus somnus 129PT outer membrane protein precursor YP_719477.1 1450879 R 205914 CDS YP_719478.1 113461409 4240777 1451784..1452524 1 NC_008309.1 hypothetical protein 1452524 4240777 HS_1266 Haemophilus somnus 129PT hypothetical protein YP_719478.1 1451784 D 205914 CDS YP_719479.1 113461410 4240778 1452524..1453063 1 NC_008309.1 Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1453063 ispZ 4240778 ispZ Haemophilus somnus 129PT intracellular septation protein A YP_719479.1 1452524 D 205914 CDS YP_719480.1 113461411 4240779 1453073..1453537 1 NC_008309.1 acyl-CoA hydrolase 1453537 yciA 4240779 yciA Haemophilus somnus 129PT acyl-CoA hydrolase YP_719480.1 1453073 D 205914 CDS YP_719481.1 113461412 4240780 1453560..1453856 1 NC_008309.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1453856 4240780 HS_1269 Haemophilus somnus 129PT YciI-like protein YP_719481.1 1453560 D 205914 CDS YP_719482.1 113461413 4240781 1454031..1456637 1 NC_008309.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1456637 acnB 4240781 acnB Haemophilus somnus 129PT bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_719482.1 1454031 D 205914 CDS YP_719483.1 113461414 4240782 1456960..1458546 1 NC_008309.1 ABC transporter periplasmic binding protein 1458546 4240782 HS_1271 Haemophilus somnus 129PT ABC transporter periplasmic binding protein YP_719483.1 1456960 D 205914 CDS YP_719484.1 113461415 4240783 1458684..1459637 1 NC_008309.1 ABC transporter permease component 1459637 4240783 HS_1272 Haemophilus somnus 129PT ABC transporter permease component YP_719484.1 1458684 D 205914 CDS YP_719485.1 113461416 4240784 1459637..1461589 1 NC_008309.1 ABC transporter ATP-binding/permease 1461589 4240784 HS_1273 Haemophilus somnus 129PT ABC transporter ATP-binding/permease YP_719485.1 1459637 D 205914 CDS YP_719486.1 113461417 4240785 1461605..1462399 1 NC_008309.1 ABC transporter ATP-binding protein 1462399 4240785 HS_1274 Haemophilus somnus 129PT ABC transporter ATP-binding protein YP_719486.1 1461605 D 205914 CDS YP_719487.1 113461418 4240786 1462480..1464066 1 NC_008309.1 FAD flavoprotein oxidase 1464066 4240786 HS_1275 Haemophilus somnus 129PT FAD flavoprotein oxidase YP_719487.1 1462480 D 205914 CDS YP_719488.1 113461419 4240787 complement(1464120..1465091) 1 NC_008309.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 1465091 lysS 4240787 lysS Haemophilus somnus 129PT lysyl-tRNA synthetase YP_719488.1 1464120 R 205914 CDS YP_719489.1 113461420 4240788 1465404..1467203 1 NC_008309.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1467203 frdA 4240788 frdA Haemophilus somnus 129PT fumarate reductase flavoprotein subunit YP_719489.1 1465404 D 205914 CDS YP_719490.1 113461421 4240789 1467196..1467966 1 NC_008309.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1467966 frdB 4240789 frdB Haemophilus somnus 129PT fumarate reductase iron-sulfur subunit YP_719490.1 1467196 D 205914 CDS YP_719491.1 113461422 4240790 1467977..1468381 1 NC_008309.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 1468381 frdC 4240790 frdC Haemophilus somnus 129PT fumarate reductase subunit C YP_719491.1 1467977 D 205914 CDS YP_719492.1 113461423 4240791 1468392..1468739 1 NC_008309.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 1468739 frdD 4240791 frdD Haemophilus somnus 129PT fumarate reductase subunit D YP_719492.1 1468392 D 205914 CDS YP_719493.1 113461424 4240792 complement(1468858..1469667) 1 NC_008309.1 permease 1469667 4240792 HS_1281 Haemophilus somnus 129PT permease YP_719493.1 1468858 R 205914 CDS YP_719494.1 113461425 4240793 complement(1469974..1471449) 1 NC_008309.1 major facilitator superfamily permease 1471449 4240793 HS_1282 Haemophilus somnus 129PT major facilitator superfamily permease YP_719494.1 1469974 R 205914 CDS YP_719495.1 113461426 4240794 complement(1471627..1472520) 1 NC_008309.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 1472520 xerD 4240794 xerD Haemophilus somnus 129PT site-specific tyrosine recombinase XerD YP_719495.1 1471627 R 205914 CDS YP_719496.1 113461427 4240795 complement(1472517..1473716) 1 NC_008309.1 transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; 3-phenylpropionic acid transporter 1473716 hcaT 4240795 hcaT Haemophilus somnus 129PT 3-phenylpropionic acid transporter YP_719496.1 1472517 R 205914 CDS YP_719497.1 113461428 4240796 complement(1473717..1474532) 1 NC_008309.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1474532 proC 4240796 proC Haemophilus somnus 129PT pyrroline-5-carboxylate reductase YP_719497.1 1473717 R 205914 CDS YP_719498.1 113461429 4240797 1474595..1475500 1 NC_008309.1 Required for efficient pilin antigenic variation; recombination associated protein 1475500 rdgC 4240797 rdgC Haemophilus somnus 129PT recombination associated protein YP_719498.1 1474595 D 205914 CDS YP_719499.1 113461430 4240798 complement(1475568..1476776) 1 NC_008309.1 opacity associated protein A 1476776 oapA 4240798 oapA Haemophilus somnus 129PT opacity associated protein A YP_719499.1 1475568 R 205914 CDS YP_719500.1 113461431 4240799 complement(1476826..1477839) 1 NC_008309.1 L-lysine 2,3-aminomutase 1477839 4240799 HS_1288 Haemophilus somnus 129PT L-lysine 2,3-aminomutase YP_719500.1 1476826 R 205914 CDS YP_719501.1 113461432 4240800 1477875..1478441 1 NC_008309.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1478441 efp 4240800 efp Haemophilus somnus 129PT elongation factor P YP_719501.1 1477875 D 205914 CDS YP_719502.1 113461433 4240801 complement(1478488..1479417) 1 NC_008309.1 tRNA-dihydrouridine synthase C 1479417 dusC 4240801 dusC Haemophilus somnus 129PT tRNA-dihydrouridine synthase C YP_719502.1 1478488 R 205914 CDS YP_719503.1 113461434 4240802 complement(1479422..1480291) 1 NC_008309.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 1480291 djlA 4240802 djlA Haemophilus somnus 129PT Dna-J like membrane chaperone protein YP_719503.1 1479422 R 205914 CDS YP_719504.1 113461435 4240803 complement(1480384..1481100) 1 NC_008309.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 1481100 rph 4240803 rph Haemophilus somnus 129PT ribonuclease PH YP_719504.1 1480384 R 205914 CDS YP_719505.1 113461436 4240804 1481221..1482084 1 NC_008309.1 hypothetical protein 1482084 4240804 HS_1293 Haemophilus somnus 129PT hypothetical protein YP_719505.1 1481221 D 205914 CDS YP_719506.1 113461437 4240805 1482093..1482926 1 NC_008309.1 aminomethyl transferase 1482926 4240805 HS_1294 Haemophilus somnus 129PT aminomethyl transferase YP_719506.1 1482093 D 205914 CDS YP_719507.1 113461438 4240806 complement(1482970..1484295) 1 NC_008309.1 facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB 1484295 srmB 4240806 srmB Haemophilus somnus 129PT ATP-dependent RNA helicase SrmB YP_719507.1 1482970 R 205914 CDS YP_719508.1 113461439 4240807 1484389..1485099 1 NC_008309.1 SAM-dependent methyltransferase 1485099 4240807 HS_1296 Haemophilus somnus 129PT SAM-dependent methyltransferase YP_719508.1 1484389 D 205914 CDS YP_719509.1 113461440 4240808 complement(1485116..1485694) 1 NC_008309.1 acyl-phosphate glycerol-3-phosphate acyltransferase 1485694 4240808 HS_1297 Haemophilus somnus 129PT acyl-phosphate glycerol-3-phosphate acyltransferase YP_719509.1 1485116 R 205914 CDS YP_719510.1 113461441 4240809 1485793..1486161 1 NC_008309.1 dihydroneopterin aldolase 1486161 folB 4240809 folB Haemophilus somnus 129PT dihydroneopterin aldolase YP_719510.1 1485793 D 205914 CDS YP_719511.1 113461442 4240810 complement(1486210..1487085) 1 NC_008309.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1487085 xerC 4240810 xerC Haemophilus somnus 129PT site-specific tyrosine recombinase XerC YP_719511.1 1486210 R 205914 CDS YP_719512.1 113461443 4240811 1487393..1488277 1 NC_008309.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1488277 psd 4240811 psd Haemophilus somnus 129PT phosphatidylserine decarboxylase YP_719512.1 1487393 D 205914 CDS YP_719513.1 113461444 4240812 1488304..1488936 1 NC_008309.1 FKBP-type peptidyl-prolyl cis-trans isomerase 1488936 fklB 4240812 fklB Haemophilus somnus 129PT FKBP-type peptidyl-prolyl cis-trans isomerase YP_719513.1 1488304 D 205914 CDS YP_719514.1 113461445 4240813 1489174..1491093 1 NC_008309.1 ABC transporter ATP-binding protein 1491093 4240813 HS_1302 Haemophilus somnus 129PT ABC transporter ATP-binding protein YP_719514.1 1489174 D 205914 CDS YP_719515.1 113461446 4240814 1491217..1492284 1 NC_008309.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1492284 recA 4240814 recA Haemophilus somnus 129PT recombinase A YP_719515.1 1491217 D 205914 CDS YP_719516.1 113461447 4240815 1492393..1492857 1 NC_008309.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 1492857 recX 4240815 recX Haemophilus somnus 129PT recombination regulator RecX YP_719516.1 1492393 D 205914 CDS YP_719517.1 113461448 4240816 1492960..1494675 1 NC_008309.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1494675 proS 4240816 proS Haemophilus somnus 129PT prolyl-tRNA synthetase YP_719517.1 1492960 D 205914 CDS YP_719518.1 113461449 4240817 1494813..1496891 1 NC_008309.1 iron-regulated outer membrane protein 1496891 frpB 4240817 frpB Haemophilus somnus 129PT iron-regulated outer membrane protein YP_719518.1 1494813 D 205914 CDS YP_719519.1 113461450 4240818 1497083..1498270 1 NC_008309.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1498270 tyrS 4240818 tyrS Haemophilus somnus 129PT tyrosyl-tRNA synthetase YP_719519.1 1497083 D 205914 CDS YP_719520.1 113461451 4240819 complement(1498316..1498921) 1 NC_008309.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1498921 recR 4240819 recR Haemophilus somnus 129PT recombination protein RecR YP_719520.1 1498316 R 205914 CDS YP_719521.1 113461452 4240820 complement(1498984..1499313) 1 NC_008309.1 hypothetical protein 1499313 4240820 HS_1309 Haemophilus somnus 129PT hypothetical protein YP_719521.1 1498984 R 205914 CDS YP_719522.1 113461453 4240821 1499439..1501337 1 NC_008309.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1501337 topB 4240821 topB Haemophilus somnus 129PT DNA topoisomerase III YP_719522.1 1499439 D 205914 CDS YP_719523.1 113461454 4240822 1501475..1501819 1 NC_008309.1 preprotein translocase subunit SecG 1501819 secG 4240822 secG Haemophilus somnus 129PT preprotein translocase subunit SecG YP_719523.1 1501475 D 205914 CDS YP_719524.1 113461455 4240824 complement(1502393..1503334) 1 NC_008309.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1503334 secF 4240824 secF Haemophilus somnus 129PT preprotein translocase subunit SecF YP_719524.1 1502393 R 205914 CDS YP_719525.1 113461456 4240825 complement(1503374..1505224) 1 NC_008309.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1505224 secD 4240825 secD Haemophilus somnus 129PT preprotein translocase subunit SecD YP_719525.1 1503374 R 205914 CDS YP_719526.1 113461457 4240826 complement(1505256..1505525) 1 NC_008309.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1505525 yajC 4240826 yajC Haemophilus somnus 129PT preprotein translocase subunit YajC YP_719526.1 1505256 R 205914 CDS YP_719527.1 113461458 4240827 complement(1505711..1506841) 1 NC_008309.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1506841 tgt 4240827 tgt Haemophilus somnus 129PT queuine tRNA-ribosyltransferase YP_719527.1 1505711 R 205914 CDS YP_719528.1 113461459 4240828 complement(1506892..1507962) 1 NC_008309.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1507962 queA 4240828 queA Haemophilus somnus 129PT S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_719528.1 1506892 R 205914 CDS YP_719529.1 113461460 4240829 complement(1508094..1509362) 1 NC_008309.1 C4-dicarboxylate transport system, large subunit 1509362 dctM 4240829 dctM Haemophilus somnus 129PT C4-dicarboxylate transport system, large subunit YP_719529.1 1508094 R 205914 CDS YP_719530.1 113461461 4240830 complement(1509380..1509832) 1 NC_008309.1 C4-dicarboxylate transport system, small subunit 1509832 dctQ 4240830 dctQ Haemophilus somnus 129PT C4-dicarboxylate transport system, small subunit YP_719530.1 1509380 R 205914 CDS YP_719531.1 113461462 4240831 complement(1509829..1510899) 1 NC_008309.1 C4-dicarboxylate transport system, C4-dicarboxylate-binding protein 1510899 dctP 4240831 dctP Haemophilus somnus 129PT C4-dicarboxylate transport system, C4-dicarboxylate-binding protein YP_719531.1 1509829 R 205914 CDS YP_719532.1 113461463 4240832 complement(1511236..1511850) 1 NC_008309.1 hypothetical protein 1511850 4240832 HS_1320 Haemophilus somnus 129PT hypothetical protein YP_719532.1 1511236 R 205914 CDS YP_719533.1 113461464 4240833 1512130..1512402 1 NC_008309.1 hypothetical protein 1512402 4240833 HS_1321 Haemophilus somnus 129PT hypothetical protein YP_719533.1 1512130 D 205914 CDS YP_719534.1 113461465 4240834 1512411..1512599 1 NC_008309.1 hypothetical protein 1512599 4240834 HS_1322 Haemophilus somnus 129PT hypothetical protein YP_719534.1 1512411 D 205914 CDS YP_719535.1 113461466 4240835 complement(1512910..1514286) 1 NC_008309.1 possible protease; collagenase prtC 1514286 prtC 4240835 prtC Haemophilus somnus 129PT collagenase prtC YP_719535.1 1512910 R 205914 CDS YP_719536.1 113461467 4240836 complement(1514428..1515237) 1 NC_008309.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1515237 ligA 4240836 ligA Haemophilus somnus 129PT DNA ligase YP_719536.1 1514428 R 205914 CDS YP_719537.1 113461468 4240837 complement(1515405..1516940) 1 NC_008309.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1516940 engA 4240837 engA Haemophilus somnus 129PT GTP-binding protein EngA YP_719537.1 1515405 R 205914 CDS YP_719538.1 113461469 4240838 complement(1517071..1517604) 1 NC_008309.1 hypothetical protein 1517604 4240838 HS_1326 Haemophilus somnus 129PT hypothetical protein YP_719538.1 1517071 R 205914 CDS YP_719539.1 113461470 4240839 1517751..1519103 1 NC_008309.1 antibiotic maturation factor 1519103 pmbA 4240839 pmbA Haemophilus somnus 129PT antibiotic maturation factor YP_719539.1 1517751 D 205914 CDS YP_719540.1 113461471 4240840 complement(1519169..1520467) 1 NC_008309.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 1520467 purA 4240840 purA Haemophilus somnus 129PT adenylosuccinate synthetase YP_719540.1 1519169 R 205914 CDS YP_719541.1 113461472 4240841 1520967..1521995 1 NC_008309.1 2-keto-3-deoxygluconate kinase 1521995 kdgK 4240841 kdgK Haemophilus somnus 129PT 2-keto-3-deoxygluconate kinase YP_719541.1 1520967 D 205914 CDS YP_719542.1 113461473 4240842 1522017..1523807 1 NC_008309.1 beta-D-glucuronidase 1523807 uidA 4240842 uidA Haemophilus somnus 129PT beta-D-glucuronidase YP_719542.1 1522017 D 205914 CDS YP_719543.1 113461474 4240843 complement(1525271..1525699) 1 NC_008309.1 hypothetical protein 1525699 4240843 HS_1331 Haemophilus somnus 129PT hypothetical protein YP_719543.1 1525271 R 205914 CDS YP_719544.1 113461475 4240844 complement(1525748..1525927) 1 NC_008309.1 hypothetical protein 1525927 4240844 HS_1332 Haemophilus somnus 129PT hypothetical protein YP_719544.1 1525748 R 205914 CDS YP_719545.1 113461476 4240845 complement(1525943..1526275) 1 NC_008309.1 hypothetical protein 1526275 4240845 HS_1333 Haemophilus somnus 129PT hypothetical protein YP_719545.1 1525943 R 205914 CDS YP_719546.1 113461477 4240846 complement(1526268..1526666) 1 NC_008309.1 terminase small subunit 1526666 4240846 HS_1334 Haemophilus somnus 129PT terminase small subunit YP_719546.1 1526268 R 205914 CDS YP_719547.1 113461478 4240847 complement(1526741..1526947) 1 NC_008309.1 prophage CP4-57 regulatory protein 1526947 4240847 HS_1335 Haemophilus somnus 129PT prophage CP4-57 regulatory protein YP_719547.1 1526741 R 205914 CDS YP_719548.1 113461479 4240848 complement(1527311..1528012) 1 NC_008309.1 hypothetical protein 1528012 4240848 HS_1336 Haemophilus somnus 129PT hypothetical protein YP_719548.1 1527311 R 205914 CDS YP_719549.1 113461480 4240849 complement(1528094..1529350) 1 NC_008309.1 integrase 1529350 int 4240849 int Haemophilus somnus 129PT integrase YP_719549.1 1528094 R 205914 CDS YP_719550.1 113461481 4240850 complement(1530177..1530716) 1 NC_008309.1 hypothetical protein 1530716 4240850 HS_1338 Haemophilus somnus 129PT hypothetical protein YP_719550.1 1530177 R 205914 CDS YP_719551.1 113461482 4240851 1531121..1532470 1 NC_008309.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 1532470 gdhA 4240851 gdhA Haemophilus somnus 129PT glutamate dehydrogenase YP_719551.1 1531121 D 205914 CDS YP_719552.1 113461483 4240852 1532664..1533491 1 NC_008309.1 hypothetical protein 1533491 4240852 HS_1340 Haemophilus somnus 129PT hypothetical protein YP_719552.1 1532664 D 205914 CDS YP_719553.1 113461484 4240853 1533632..1534258 1 NC_008309.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 1534258 upp 4240853 upp Haemophilus somnus 129PT uracil phosphoribosyltransferase YP_719553.1 1533632 D 205914 CDS YP_719554.1 113461485 4240854 1534360..1535601 1 NC_008309.1 uracil permease 1535601 uraA 4240854 uraA Haemophilus somnus 129PT uracil permease YP_719554.1 1534360 D 205914 CDS YP_719555.1 113461486 4240855 1535688..1536383 1 NC_008309.1 controls initiation of DNA replication by inhibiting re-initiation of replication, promotes hydrolysis of DnaA-bound ATP; DNA replication initiation factor 1536383 4240855 HS_1343 Haemophilus somnus 129PT DNA replication initiation factor YP_719555.1 1535688 D 205914 CDS YP_719556.1 113461487 4240856 complement(1536501..1536824) 1 NC_008309.1 thioredoxin 1536824 trxA 4240856 trxA Haemophilus somnus 129PT thioredoxin YP_719556.1 1536501 R 205914 CDS YP_719557.1 113461488 4240857 complement(1536989..1538098) 1 NC_008309.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity; cystathionine gamma-synthase 1538098 metB 4240857 metB Haemophilus somnus 129PT cystathionine gamma-synthase YP_719557.1 1536989 R 205914 CDS YP_719558.1 113461489 4240861 1538796..1539662 1 NC_008309.1 chromosome partitioning-like protein 1539662 4240861 HS_1346 Haemophilus somnus 129PT chromosome partitioning-like protein YP_719558.1 1538796 D 205914 CDS YP_719559.1 113461490 4240862 1539655..1541031 1 NC_008309.1 replicative DNA helicase 1541031 dnaB 4240862 dnaB Haemophilus somnus 129PT replicative DNA helicase YP_719559.1 1539655 D 205914 CDS YP_719560.1 113461491 4240863 1541021..1542727 1 NC_008309.1 hypothetical protein 1542727 4240863 HS_1348 Haemophilus somnus 129PT hypothetical protein YP_719560.1 1541021 D 205914 CDS YP_719561.1 113461492 4240864 1543110..1543763 1 NC_008309.1 hypothetical protein 1543763 4240864 HS_1349 Haemophilus somnus 129PT hypothetical protein YP_719561.1 1543110 D 205914 CDS YP_719562.1 113461493 4240865 1543827..1544285 1 NC_008309.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1544285 mgsA 4240865 mgsA Haemophilus somnus 129PT methylglyoxal synthase YP_719562.1 1543827 D 205914 CDS YP_719563.1 113461494 4240866 1544310..1546475 1 NC_008309.1 hypothetical protein 1546475 4240866 HS_1351 Haemophilus somnus 129PT hypothetical protein YP_719563.1 1544310 D 205914 CDS YP_719564.1 113461495 4240867 complement(1546477..1546983) 1 NC_008309.1 hypothetical protein 1546983 4240867 HS_1352 Haemophilus somnus 129PT hypothetical protein YP_719564.1 1546477 R 205914 CDS YP_719565.1 113461496 4240868 1547068..1548021 1 NC_008309.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1548021 4240868 HS_1353 Haemophilus somnus 129PT N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_719565.1 1547068 D 205914 CDS YP_719566.1 113461497 4240869 complement(1548092..1549144) 1 NC_008309.1 permease 1549144 4240869 HS_1354 Haemophilus somnus 129PT permease YP_719566.1 1548092 R 205914 CDS YP_719567.1 113461498 4240870 complement(1549144..1549482) 1 NC_008309.1 nitrogen regulatory protein p-II 1549482 glnB 4240870 glnB Haemophilus somnus 129PT nitrogen regulatory protein p-II YP_719567.1 1549144 R 205914 CDS YP_719568.1 113461499 4240871 complement(1549525..1550109) 1 NC_008309.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 1550109 mogA 4240871 mogA Haemophilus somnus 129PT molybdenum cofactor biosynthesis protein MogA YP_719568.1 1549525 R 205914 CDS YP_719569.1 113461500 4240872 complement(1550170..1550805) 1 NC_008309.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1550805 rnhB 4240872 rnhB Haemophilus somnus 129PT ribonuclease HII YP_719569.1 1550170 R 205914 CDS YP_719570.1 113461501 4240873 complement(1550806..1551975) 1 NC_008309.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 1551975 lpxB 4240873 lpxB Haemophilus somnus 129PT lipid-A-disaccharide synthase YP_719570.1 1550806 R 205914 CDS YP_719571.1 113461502 4240874 complement(1552058..1552846) 1 NC_008309.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 1552846 lpxA 4240874 lpxA Haemophilus somnus 129PT UDP-N-acetylglucosamine acyltransferase YP_719571.1 1552058 R 205914 CDS YP_719572.1 113461503 4240875 complement(1552860..1553315) 1 NC_008309.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 1553315 fabZ 4240875 fabZ Haemophilus somnus 129PT (3R)-hydroxymyristoyl-ACP dehydratase YP_719572.1 1552860 R 205914 CDS YP_719573.1 113461504 4240876 complement(1553399..1554358) 1 NC_008309.1 hypothetical protein 1554358 4240876 HS_1361 Haemophilus somnus 129PT hypothetical protein YP_719573.1 1553399 R 205914 CDS YP_719574.1 113461505 4240877 complement(1554396..1555730) 1 NC_008309.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase 1555730 argG 4240877 argG Haemophilus somnus 129PT argininosuccinate synthase YP_719574.1 1554396 R 205914 CDS YP_719575.1 113461506 4240878 complement(1555823..1556653) 1 NC_008309.1 hypothetical protein 1556653 4240878 HS_1363 Haemophilus somnus 129PT hypothetical protein YP_719575.1 1555823 R 205914 CDS YP_719576.1 113461507 4240879 complement(1556720..1557565) 1 NC_008309.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 1557565 purC 4240879 purC Haemophilus somnus 129PT phosphoribosylaminoimidazole-succinocarboxamide synthase YP_719576.1 1556720 R 205914 CDS YP_719577.1 113461508 4240880 complement(1558147..1558773) 1 NC_008309.1 hypothetical protein 1558773 4240880 HS_1365 Haemophilus somnus 129PT hypothetical protein YP_719577.1 1558147 R 205914 CDS YP_719578.1 113461509 4240881 complement(1558773..1559306) 1 NC_008309.1 hypothetical protein 1559306 4240881 HS_1366 Haemophilus somnus 129PT hypothetical protein YP_719578.1 1558773 R 205914 CDS YP_719579.1 113461510 4240882 complement(1559325..1560641) 1 NC_008309.1 hypothetical protein 1560641 4240882 HS_1367 Haemophilus somnus 129PT hypothetical protein YP_719579.1 1559325 R 205914 CDS YP_719580.1 113461511 4240883 complement(1560645..1560962) 1 NC_008309.1 hypothetical protein 1560962 4240883 HS_1368 Haemophilus somnus 129PT hypothetical protein YP_719580.1 1560645 R 205914 CDS YP_719581.1 113461512 4240884 complement(1560979..1562226) 1 NC_008309.1 hypothetical protein 1562226 4240884 HS_1369 Haemophilus somnus 129PT hypothetical protein YP_719581.1 1560979 R 205914 CDS YP_719582.1 113461513 4240885 complement(1562322..1562606) 1 NC_008309.1 hypothetical protein 1562606 4240885 HS_1370 Haemophilus somnus 129PT hypothetical protein YP_719582.1 1562322 R 205914 CDS YP_719583.1 113461514 4240886 complement(1562582..1563130) 1 NC_008309.1 hypothetical protein 1563130 4240886 HS_1371 Haemophilus somnus 129PT hypothetical protein YP_719583.1 1562582 R 205914 CDS YP_719584.1 113461515 4240887 complement(1563261..1565549) 1 NC_008309.1 phage-related tail fiber protein 1565549 4240887 HS_1372 Haemophilus somnus 129PT phage-related tail fiber protein YP_719584.1 1563261 R 205914 CDS YP_719585.1 113461516 4240888 complement(1565542..1567521) 1 NC_008309.1 hypothetical protein 1567521 4240888 HS_1373 Haemophilus somnus 129PT hypothetical protein YP_719585.1 1565542 R 205914 CDS YP_719586.1 113461517 4240889 complement(1567585..1568034) 1 NC_008309.1 hypothetical protein 1568034 4240889 HS_1374 Haemophilus somnus 129PT hypothetical protein YP_719586.1 1567585 R 205914 CDS YP_719587.1 113461518 4240890 complement(1568244..1568633) 1 NC_008309.1 hypothetical protein 1568633 4240890 HS_1375 Haemophilus somnus 129PT hypothetical protein YP_719587.1 1568244 R 205914 CDS YP_719588.1 113461519 4240891 complement(1568630..1569076) 1 NC_008309.1 hypothetical protein 1569076 4240891 HS_1376 Haemophilus somnus 129PT hypothetical protein YP_719588.1 1568630 R 205914 CDS YP_719589.1 113461520 4240892 complement(1569138..1570133) 1 NC_008309.1 hypothetical protein 1570133 4240892 HS_1377 Haemophilus somnus 129PT hypothetical protein YP_719589.1 1569138 R 205914 CDS YP_719590.1 113461521 4240893 complement(1570159..1571022) 1 NC_008309.1 hypothetical protein 1571022 4240893 HS_1378 Haemophilus somnus 129PT hypothetical protein YP_719590.1 1570159 R 205914 CDS YP_719591.1 113461522 4240894 complement(1571100..1571282) 1 NC_008309.1 hypothetical protein 1571282 4240894 HS_1379 Haemophilus somnus 129PT hypothetical protein YP_719591.1 1571100 R 205914 CDS YP_719592.1 113461523 4240895 complement(1571380..1571682) 1 NC_008309.1 transcription regulator 1571682 4240895 HS_1380 Haemophilus somnus 129PT transcription regulator YP_719592.1 1571380 R 205914 CDS YP_719593.1 113461524 4240896 complement(1572189..1580201) 1 NC_008309.1 hypothetical protein 1580201 4240896 HS_1381 Haemophilus somnus 129PT hypothetical protein YP_719593.1 1572189 R 205914 CDS YP_719594.1 113461525 4240897 complement(1580282..1580668) 1 NC_008309.1 hypothetical protein 1580668 4240897 HS_1382 Haemophilus somnus 129PT hypothetical protein YP_719594.1 1580282 R 205914 CDS YP_719595.1 113461526 4240898 1580465..1580851 1 NC_008309.1 hypothetical protein 1580851 4240898 HS_1383 Haemophilus somnus 129PT hypothetical protein YP_719595.1 1580465 D 205914 CDS YP_719596.1 113461527 4240899 complement(1581207..1583273) 1 NC_008309.1 hypothetical protein 1583273 4240899 HS_1384 Haemophilus somnus 129PT hypothetical protein YP_719596.1 1581207 R 205914 CDS YP_719597.1 113461528 4240900 complement(1583386..1584933) 1 NC_008309.1 hypothetical protein 1584933 4240900 HS_1385 Haemophilus somnus 129PT hypothetical protein YP_719597.1 1583386 R 205914 CDS YP_719598.1 113461529 4240901 complement(1584933..1585628) 1 NC_008309.1 terminase small subunit 1585628 4240901 HS_1386 Haemophilus somnus 129PT terminase small subunit YP_719598.1 1584933 R 205914 CDS YP_719599.1 113461530 4240902 complement(1585825..1586151) 1 NC_008309.1 hypothetical protein 1586151 4240902 HS_1387 Haemophilus somnus 129PT hypothetical protein YP_719599.1 1585825 R 205914 CDS YP_719600.1 113461531 4240903 complement(1586124..1586660) 1 NC_008309.1 lysozyme, phage-related lysozyme 1586660 4240903 HS_1388 Haemophilus somnus 129PT lysozyme, phage-related lysozyme YP_719600.1 1586124 R 205914 CDS YP_719601.1 113461532 4240904 complement(1586653..1586889) 1 NC_008309.1 hypothetical protein 1586889 4240904 HS_1389 Haemophilus somnus 129PT hypothetical protein YP_719601.1 1586653 R 205914 CDS YP_719602.1 113461533 4240905 complement(1587177..1588223) 1 NC_008309.1 transposase 1588223 4240905 HS_1390 Haemophilus somnus 129PT transposase YP_719602.1 1587177 R 205914 CDS YP_719603.1 113461534 4240906 1588360..1588776 1 NC_008309.1 transposase 1588776 4240906 HS_1391 Haemophilus somnus 129PT transposase YP_719603.1 1588360 D 205914 CDS YP_719604.1 113461535 4240907 complement(1588836..1589234) 1 NC_008309.1 hypothetical protein 1589234 4240907 HS_1392 Haemophilus somnus 129PT hypothetical protein YP_719604.1 1588836 R 205914 CDS YP_719605.1 113461536 4240908 complement(1589385..1589789) 1 NC_008309.1 hypothetical protein 1589789 4240908 HS_1393 Haemophilus somnus 129PT hypothetical protein YP_719605.1 1589385 R 205914 CDS YP_719606.1 113461537 4240909 complement(1589779..1590390) 1 NC_008309.1 Bacteriophage Lambda NinG recombination protein; NinG recombination protein 1590390 4240909 HS_1394 Haemophilus somnus 129PT NinG recombination protein YP_719606.1 1589779 R 205914 CDS YP_719607.1 113461538 4240910 1590548..1590733 1 NC_008309.1 hypothetical protein 1590733 4240910 HS_1395 Haemophilus somnus 129PT hypothetical protein YP_719607.1 1590548 D 205914 CDS YP_719608.1 113461539 4240911 1590756..1591169 1 NC_008309.1 hypothetical protein 1591169 4240911 HS_1396 Haemophilus somnus 129PT hypothetical protein YP_719608.1 1590756 D 205914 CDS YP_719609.1 113461540 4240912 complement(1591256..1592215) 1 NC_008309.1 hypothetical protein 1592215 4240912 HS_1397 Haemophilus somnus 129PT hypothetical protein YP_719609.1 1591256 R 205914 CDS YP_719610.1 113461541 4240913 1592579..1593193 1 NC_008309.1 prophage antirepressor 1593193 4240913 HS_1398 Haemophilus somnus 129PT prophage antirepressor YP_719610.1 1592579 D 205914 CDS YP_719611.1 113461542 4240914 complement(1593245..1593697) 1 NC_008309.1 hypothetical protein 1593697 4240914 HS_1399 Haemophilus somnus 129PT hypothetical protein YP_719611.1 1593245 R 205914 CDS YP_719612.1 113461543 4240915 complement(1593710..1594243) 1 NC_008309.1 DNA methylase 1594243 4240915 HS_1400 Haemophilus somnus 129PT DNA methylase YP_719612.1 1593710 R 205914 CDS YP_719613.1 113461544 4240916 complement(1594258..1594950) 1 NC_008309.1 replication protein P 1594950 4240916 HS_1401 Haemophilus somnus 129PT replication protein P YP_719613.1 1594258 R 205914 CDS YP_719614.1 113461545 4240917 complement(1594947..1595738) 1 NC_008309.1 hypothetical protein 1595738 4240917 HS_1402 Haemophilus somnus 129PT hypothetical protein YP_719614.1 1594947 R 205914 CDS YP_719615.1 113461546 4240918 complement(1595735..1595983) 1 NC_008309.1 hypothetical protein 1595983 4240918 HS_1403 Haemophilus somnus 129PT hypothetical protein YP_719615.1 1595735 R 205914 CDS YP_719616.1 113461547 4240919 complement(1596026..1596478) 1 NC_008309.1 hypothetical protein 1596478 4240919 HS_1404 Haemophilus somnus 129PT hypothetical protein YP_719616.1 1596026 R 205914 CDS YP_719617.1 113461548 4240920 complement(1596523..1596729) 1 NC_008309.1 hypothetical protein 1596729 4240920 HS_1405 Haemophilus somnus 129PT hypothetical protein YP_719617.1 1596523 R 205914 CDS YP_719618.1 113461549 4240921 1596868..1597503 1 NC_008309.1 repressor protein 1597503 4240921 HS_1406 Haemophilus somnus 129PT repressor protein YP_719618.1 1596868 D 205914 CDS YP_719619.1 113461550 4240922 1597622..1598665 1 NC_008309.1 hypothetical protein 1598665 4240922 HS_1407 Haemophilus somnus 129PT hypothetical protein YP_719619.1 1597622 D 205914 CDS YP_719620.1 113461551 4240923 1598658..1598921 1 NC_008309.1 hypothetical protein 1598921 4240923 HS_1408 Haemophilus somnus 129PT hypothetical protein YP_719620.1 1598658 D 205914 CDS YP_719621.1 113461552 4240924 1598911..1599276 1 NC_008309.1 hypothetical protein 1599276 4240924 HS_1409 Haemophilus somnus 129PT hypothetical protein YP_719621.1 1598911 D 205914 CDS YP_719622.1 113461553 4240925 1599786..1600052 1 NC_008309.1 hypothetical protein 1600052 4240925 HS_1410 Haemophilus somnus 129PT hypothetical protein YP_719622.1 1599786 D 205914 CDS YP_719623.1 113461554 4240926 complement(1600415..1600603) 1 NC_008309.1 hypothetical protein 1600603 4240926 HS_1411 Haemophilus somnus 129PT hypothetical protein YP_719623.1 1600415 R 205914 CDS YP_719624.1 113461555 4240927 1600832..1601518 1 NC_008309.1 hypothetical protein 1601518 4240927 HS_1412 Haemophilus somnus 129PT hypothetical protein YP_719624.1 1600832 D 205914 CDS YP_719625.1 113461556 4240928 1601521..1601718 1 NC_008309.1 hypothetical protein 1601718 4240928 HS_1413 Haemophilus somnus 129PT hypothetical protein YP_719625.1 1601521 D 205914 CDS YP_719626.1 113461557 4240929 1602088..1602576 1 NC_008309.1 hypothetical protein 1602576 4240929 HS_1414 Haemophilus somnus 129PT hypothetical protein YP_719626.1 1602088 D 205914 CDS YP_719627.1 113461558 4240930 1602930..1603595 1 NC_008309.1 prophage antirepressor 1603595 4240930 HS_1415 Haemophilus somnus 129PT prophage antirepressor YP_719627.1 1602930 D 205914 CDS YP_719628.1 113461559 4240931 1603682..1603966 1 NC_008309.1 hypothetical protein 1603966 4240931 HS_1416 Haemophilus somnus 129PT hypothetical protein YP_719628.1 1603682 D 205914 CDS YP_719629.1 113461560 4240932 1603963..1604400 1 NC_008309.1 hypothetical protein 1604400 4240932 HS_1417 Haemophilus somnus 129PT hypothetical protein YP_719629.1 1603963 D 205914 CDS YP_719630.1 113461561 4240933 1604397..1604696 1 NC_008309.1 hypothetical protein 1604696 4240933 HS_1418 Haemophilus somnus 129PT hypothetical protein YP_719630.1 1604397 D 205914 CDS YP_719631.1 113461562 4240934 1604708..1605643 1 NC_008309.1 phage recombinase 1605643 4240934 HS_1419 Haemophilus somnus 129PT phage recombinase YP_719631.1 1604708 D 205914 CDS YP_719632.1 113461563 4240935 1605636..1606304 1 NC_008309.1 hypothetical protein 1606304 4240935 HS_1420 Haemophilus somnus 129PT hypothetical protein YP_719632.1 1605636 D 205914 CDS YP_719633.1 113461564 4240936 1606354..1607412 1 NC_008309.1 hypothetical protein 1607412 4240936 HS_1421 Haemophilus somnus 129PT hypothetical protein YP_719633.1 1606354 D 205914 CDS YP_719634.1 113461565 4240937 1607441..1608538 1 NC_008309.1 DNA-cytosine methyltransferase 1608538 4240937 HS_1422 Haemophilus somnus 129PT DNA-cytosine methyltransferase YP_719634.1 1607441 D 205914 CDS YP_719635.1 113461566 4240938 1608571..1609368 1 NC_008309.1 hypothetical protein 1609368 4240938 HS_1423 Haemophilus somnus 129PT hypothetical protein YP_719635.1 1608571 D 205914 CDS YP_719636.1 113461567 4240939 1609378..1609563 1 NC_008309.1 phage transcriptional regulator, AlpA 1609563 4240939 HS_1424 Haemophilus somnus 129PT phage transcriptional regulator, AlpA YP_719636.1 1609378 D 205914 CDS YP_719637.1 113461568 4240940 complement(1609525..1610766) 1 NC_008309.1 integrase 1610766 4240940 HS_1425 Haemophilus somnus 129PT integrase YP_719637.1 1609525 R 205914 CDS YP_719638.1 113461569 4240942 1611223..1612962 1 NC_008309.1 role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; sulfate transporter YchM 1612962 ychM 4240942 ychM Haemophilus somnus 129PT sulfate transporter YchM YP_719638.1 1611223 D 205914 CDS YP_719639.1 113461570 4240943 complement(1613005..1614381) 1 NC_008309.1 signal recognition particle subunit FFH/SRP54 (srp54) 1614381 ffh 4240943 ffh Haemophilus somnus 129PT signal recognition particle subunit FFH/SRP54 (srp54) YP_719639.1 1613005 R 205914 CDS YP_719640.1 113461571 4240944 1614531..1615328 1 NC_008309.1 permease 1615328 4240944 HS_1428 Haemophilus somnus 129PT permease YP_719640.1 1614531 D 205914 CDS YP_719641.1 113461572 4240945 1615398..1616657 1 NC_008309.1 transporter 1616657 4240945 HS_1429 Haemophilus somnus 129PT transporter YP_719641.1 1615398 D 205914 CDS YP_719642.1 113461573 4240946 complement(1616691..1618106) 1 NC_008309.1 pilin/fimbriae biogenesis protein 1618106 pilB 4240946 pilB Haemophilus somnus 129PT pilin/fimbriae biogenesis protein YP_719642.1 1616691 R 205914 CDS YP_719643.1 113461574 4240947 1618465..1619763 1 NC_008309.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1619763 tig 4240947 tig Haemophilus somnus 129PT trigger factor YP_719643.1 1618465 D 205914 CDS YP_719644.2 161486690 4240948 1619849..1620430 1 NC_008309.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1620430 clpP 4240948 clpP Haemophilus somnus 129PT ATP-dependent Clp protease proteolytic subunit YP_719644.2 1619849 D 205914 CDS YP_719645.1 113461576 4240949 1620446..1621690 1 NC_008309.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1621690 clpX 4240949 clpX Haemophilus somnus 129PT ATP-dependent protease ATP-binding subunit ClpX YP_719645.1 1620446 D 205914 CDS YP_719646.1 113461577 4240950 complement(1622188..1623375) 1 NC_008309.1 N-acyl-L-amino acid amidohydrolase 1623375 amaA 4240950 amaA Haemophilus somnus 129PT N-acyl-L-amino acid amidohydrolase YP_719646.1 1622188 R 205914 CDS YP_719647.1 113461578 4240951 complement(1623908..1624357) 1 NC_008309.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 1624357 rplI 4240951 rplI Haemophilus somnus 129PT 50S ribosomal protein L9 YP_719647.1 1623908 R 205914 CDS YP_719648.1 113461579 4240952 complement(1624376..1624603) 1 NC_008309.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 1624603 rpsR 4240952 rpsR Haemophilus somnus 129PT 30S ribosomal protein S18 YP_719648.1 1624376 R 205914 CDS YP_719649.1 113461580 4240953 complement(1624616..1624942) 1 NC_008309.1 binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 1624942 priB 4240953 priB Haemophilus somnus 129PT primosomal replication protein N YP_719649.1 1624616 R 205914 CDS YP_719650.1 113461581 4240954 complement(1624929..1625306) 1 NC_008309.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1625306 rpsF 4240954 rpsF Haemophilus somnus 129PT 30S ribosomal protein S6 YP_719650.1 1624929 R 205914 CDS YP_719651.1 113461582 4240955 complement(1625558..1626280) 1 NC_008309.1 MgtC family membrane protein 1626280 4240955 HS_1439 Haemophilus somnus 129PT MgtC family membrane protein YP_719651.1 1625558 R 205914 CDS YP_719652.1 113461583 4240956 complement(1626397..1627398) 1 NC_008309.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 1627398 asnA 4240956 asnA Haemophilus somnus 129PT asparagine synthetase AsnA YP_719652.1 1626397 R 205914 CDS YP_719653.1 113461584 4240957 1627573..1628025 1 NC_008309.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 1628025 asnC 4240957 asnC Haemophilus somnus 129PT DNA-binding transcriptional regulator AsnC YP_719653.1 1627573 D 205914 CDS YP_719654.1 113461585 4240958 complement(1628080..1628892) 1 NC_008309.1 hypothetical protein 1628892 4240958 HS_1442 Haemophilus somnus 129PT hypothetical protein YP_719654.1 1628080 R 205914 CDS YP_719655.1 113461586 4240959 complement(1628939..1630171) 1 NC_008309.1 hypothetical protein 1630171 4240959 HS_1443 Haemophilus somnus 129PT hypothetical protein YP_719655.1 1628939 R 205914 CDS YP_719656.1 113461587 4240960 complement(1630263..1631594) 1 NC_008309.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 1631594 rimO 4240960 rimO Haemophilus somnus 129PT ribosomal protein S12 methylthiotransferase YP_719656.1 1630263 R 205914 CDS YP_719657.1 113461588 4240961 complement(1631734..1632417) 1 NC_008309.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 1632417 gpmA 4240961 gpmA Haemophilus somnus 129PT phosphoglyceromutase YP_719657.1 1631734 R 205914 CDS YP_719658.1 113461589 4240962 1632653..1633405 1 NC_008309.1 L-fucose operon activator 1633405 fucR 4240962 fucR Haemophilus somnus 129PT L-fucose operon activator YP_719658.1 1632653 D 205914 CDS YP_719659.1 113461590 4240963 1633660..1634952 1 NC_008309.1 L-fucose permease 1634952 fucP 4240963 fucP Haemophilus somnus 129PT L-fucose permease YP_719659.1 1633660 D 205914 CDS YP_719660.1 113461591 4240964 1635148..1636914 1 NC_008309.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose; L-fucose isomerase 1636914 fucI 4240964 fucI Haemophilus somnus 129PT L-fucose isomerase YP_719660.1 1635148 D 205914 CDS YP_719661.1 113461592 4240965 1636996..1638453 1 NC_008309.1 L-fuculokinase 1638453 fucK 4240965 fucK Haemophilus somnus 129PT L-fuculokinase YP_719661.1 1636996 D 205914 CDS YP_719662.1 113461593 4240966 1638447..1638881 1 NC_008309.1 fucose operon fucU protein 1638881 fucU 4240966 fucU Haemophilus somnus 129PT fucose operon fucU protein YP_719662.1 1638447 D 205914 CDS YP_719663.1 113461594 4240967 1638895..1639542 1 NC_008309.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 1639542 fucA 4240967 fucA Haemophilus somnus 129PT L-fuculose phosphate aldolase YP_719663.1 1638895 D 205914 CDS YP_719664.1 113461595 4240968 1639764..1640048 1 NC_008309.1 hypothetical protein 1640048 4240968 HS_1452 Haemophilus somnus 129PT hypothetical protein YP_719664.1 1639764 D 205914 CDS YP_719665.1 113461596 4240974 complement(1645935..1646738) 1 NC_008309.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1646738 murI 4240974 murI Haemophilus somnus 129PT glutamate racemase YP_719665.1 1645935 R 205914 CDS YP_719666.1 113461597 4240975 complement(1646808..1648889) 1 NC_008309.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1648889 recG 4240975 recG Haemophilus somnus 129PT ATP-dependent DNA helicase RecG YP_719666.1 1646808 R 205914 CDS YP_719667.1 113461598 4240976 complement(1648889..1651012) 1 NC_008309.1 guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase 1651012 spoT 4240976 spoT Haemophilus somnus 129PT guanosine-3'5'-bis(diphosphate) 3'- pyrophosphohydrolase YP_719667.1 1648889 R 205914 CDS YP_719668.1 113461599 4240977 complement(1651093..1651365) 1 NC_008309.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1651365 rpoZ 4240977 rpoZ Haemophilus somnus 129PT DNA-directed RNA polymerase subunit omega YP_719668.1 1651093 R 205914 CDS YP_719669.1 113461600 4240978 complement(1651420..1652058) 1 NC_008309.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1652058 gmk 4240978 gmk Haemophilus somnus 129PT guanylate kinase YP_719669.1 1651420 R 205914 CDS YP_719670.1 113461601 4240979 complement(1652155..1652955) 1 NC_008309.1 lipopolysaccharide choline phosphotransferase 1652955 licD 4240979 licD Haemophilus somnus 129PT lipopolysaccharide choline phosphotransferase YP_719670.1 1652155 R 205914 CDS YP_719671.1 113461602 4240980 complement(1652957..1653655) 1 NC_008309.1 LicC protein 1653655 licC 4240980 licC Haemophilus somnus 129PT LicC protein YP_719671.1 1652957 R 205914 CDS YP_719672.1 113461603 4240981 complement(1653652..1654584) 1 NC_008309.1 lic-1 operon protein LicB 1654584 licB 4240981 licB Haemophilus somnus 129PT lic-1 operon protein LicB YP_719672.1 1653652 R 205914 CDS YP_719673.1 113461604 4240982 complement(1654571..1655374) 1 NC_008309.1 LicA protein 1655374 licA 4240982 licA Haemophilus somnus 129PT LicA protein YP_719673.1 1654571 R 205914 CDS YP_719674.1 113461605 4240984 1656140..1656331 1 NC_008309.1 hypothetical protein 1656331 4240984 HS_1464 Haemophilus somnus 129PT hypothetical protein YP_719674.1 1656140 D 205914 CDS YP_719675.1 113461606 4240985 1656163..1656372 1 NC_008309.1 hypothetical protein 1656372 4240985 HS_1465 Haemophilus somnus 129PT hypothetical protein YP_719675.1 1656163 D 205914 CDS YP_719676.1 113461607 4240986 1656605..1657609 1 NC_008309.1 glyceraldehyde-3-phosphate dehydrogenase 1657609 gapA 4240986 gapA Haemophilus somnus 129PT glyceraldehyde-3-phosphate dehydrogenase YP_719676.1 1656605 D 205914 CDS YP_719677.1 113461608 4240987 complement(1657785..1658252) 1 NC_008309.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 1658252 nrdG 4240987 nrdG Haemophilus somnus 129PT anaerobic ribonucleotide reductase-activating protein YP_719677.1 1657785 R 205914 CDS YP_719678.1 113461609 4240988 complement(1658268..1660394) 1 NC_008309.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1660394 nrdD 4240988 nrdD Haemophilus somnus 129PT anaerobic ribonucleoside triphosphate reductase YP_719678.1 1658268 R 205914 CDS YP_719679.1 113461610 4240989 complement(1660679..1662475) 1 NC_008309.1 ABC transporter ATP-binding/permease 1662475 4240989 HS_1469 Haemophilus somnus 129PT ABC transporter ATP-binding/permease YP_719679.1 1660679 R 205914 CDS YP_719680.1 113461611 4240990 1662669..1664327 1 NC_008309.1 hypothetical protein 1664327 4240990 HS_1470 Haemophilus somnus 129PT hypothetical protein YP_719680.1 1662669 D 205914 CDS YP_719681.1 113461612 4240991 complement(1664281..1664481) 1 NC_008309.1 hypothetical protein 1664481 4240991 HS_1471 Haemophilus somnus 129PT hypothetical protein YP_719681.1 1664281 R 205914 CDS YP_719682.1 113461613 4240992 1664502..1664735 1 NC_008309.1 50S ribosomal protein L31P 1664735 rpmE 4240992 rpmE Haemophilus somnus 129PT 50S ribosomal protein L31P YP_719682.1 1664502 D 205914 CDS YP_719683.1 113461614 4240993 complement(1664811..1665500) 1 NC_008309.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1665500 pfs 4240993 pfs Haemophilus somnus 129PT 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_719683.1 1664811 R 205914 CDS YP_719684.1 113461615 4240994 complement(1665695..1667416) 1 NC_008309.1 single-strand DNA-specific exonuclease 1667416 recJ 4240994 recJ Haemophilus somnus 129PT single-strand DNA-specific exonuclease YP_719684.1 1665695 R 205914 CDS YP_719685.1 113461616 4240995 complement(1667409..1668107) 1 NC_008309.1 thiol:disulfide interchange protein 1668107 dsbC 4240995 dsbC Haemophilus somnus 129PT thiol:disulfide interchange protein YP_719685.1 1667409 R 205914 CDS YP_719686.1 113461617 4240996 1668554..1669336 1 NC_008309.1 peptide chain release factor 2 1669336 prfB 4240996 prfB Haemophilus somnus 129PT peptide chain release factor 2 YP_719686.1 1668554 D 205914 CDS YP_719687.1 113461618 4240997 1669414..1670922 1 NC_008309.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1670922 lysS 4240997 lysS Haemophilus somnus 129PT lysyl-tRNA synthetase YP_719687.1 1669414 D 205914 CDS YP_719688.1 113461619 4240998 complement(1670973..1671203) 1 NC_008309.1 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1671203 4240998 HS_1478 Haemophilus somnus 129PT acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_719688.1 1670973 R 205914 CDS YP_719689.1 113461620 4240999 complement(1671213..1672325) 1 NC_008309.1 Involved in sulfonamide (sulfathiazole) and bicyclomycin resistance; bicyclomycin/multidrug efflux system 1672325 bcr 4240999 bcr Haemophilus somnus 129PT bicyclomycin/multidrug efflux system YP_719689.1 1671213 R 205914 CDS YP_719690.1 113461621 4241000 1672855..1673424 1 NC_008309.1 permease 1673424 4241000 HS_1480 Haemophilus somnus 129PT permease YP_719690.1 1672855 D 205914 CDS YP_719691.1 113461622 4241001 1673753..1674358 1 NC_008309.1 hypothetical protein 1674358 4241001 HS_1481 Haemophilus somnus 129PT hypothetical protein YP_719691.1 1673753 D 205914 CDS YP_719692.1 113461623 4241002 1674402..1674824 1 NC_008309.1 hypothetical protein 1674824 4241002 HS_1482 Haemophilus somnus 129PT hypothetical protein YP_719692.1 1674402 D 205914 CDS YP_719693.1 113461624 4241003 complement(1674968..1676257) 1 NC_008309.1 hypothetical protein 1676257 4241003 HS_1483 Haemophilus somnus 129PT hypothetical protein YP_719693.1 1674968 R 205914 CDS YP_719694.1 113461625 4241004 complement(1676318..1676845) 1 NC_008309.1 hypothetical protein 1676845 4241004 HS_1484 Haemophilus somnus 129PT hypothetical protein YP_719694.1 1676318 R 205914 CDS YP_719695.1 113461626 4241005 complement(1676873..1677646) 1 NC_008309.1 hypothetical protein 1677646 4241005 HS_1485 Haemophilus somnus 129PT hypothetical protein YP_719695.1 1676873 R 205914 CDS YP_719696.1 113461627 4241006 complement(1677664..1678722) 1 NC_008309.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1678722 holB 4241006 holB Haemophilus somnus 129PT DNA polymerase III subunit delta' YP_719696.1 1677664 R 205914 CDS YP_719697.1 113461628 4241007 complement(1678646..1679278) 1 NC_008309.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 1679278 tmk 4241007 tmk Haemophilus somnus 129PT thymidylate kinase YP_719697.1 1678646 R 205914 CDS YP_719698.1 113461629 4241008 complement(1679288..1680328) 1 NC_008309.1 hypothetical protein 1680328 4241008 HS_1488 Haemophilus somnus 129PT hypothetical protein YP_719698.1 1679288 R 205914 CDS YP_719699.1 113461630 4241009 complement(1680460..1681272) 1 NC_008309.1 Cof-like hydrolase 1681272 4241009 HS_1489 Haemophilus somnus 129PT Cof-like hydrolase YP_719699.1 1680460 R 205914 CDS YP_719700.1 113461631 4241010 1681419..1682117 1 NC_008309.1 competence protein 1682117 comF 4241010 comF Haemophilus somnus 129PT competence protein YP_719700.1 1681419 D 205914 CDS YP_719701.1 113461632 4241011 1682210..1682791 1 NC_008309.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; DNA uptake protein 1682791 4241011 HS_1491 Haemophilus somnus 129PT DNA uptake protein YP_719701.1 1682210 D 205914 CDS YP_719702.1 113461633 4241012 complement(1682829..1684145) 1 NC_008309.1 branched-chain amino acid carrier protein 1684145 brnQ 4241012 brnQ Haemophilus somnus 129PT branched-chain amino acid carrier protein YP_719702.1 1682829 R 205914 CDS YP_719703.1 113461634 4241013 complement(1684212..1686515) 1 NC_008309.1 transcription accessory protein 1686515 tex 4241013 tex Haemophilus somnus 129PT transcription accessory protein YP_719703.1 1684212 R 205914 CDS YP_719704.1 113461635 4241014 1686695..1687171 1 NC_008309.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1687171 greB 4241014 greB Haemophilus somnus 129PT transcription elongation factor GreB YP_719704.1 1686695 D 205914 CDS YP_719705.1 113461636 4241015 1687181..1687462 1 NC_008309.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1687462 ftsB 4241015 ftsB Haemophilus somnus 129PT cell division protein FtsB YP_719705.1 1687181 D 205914 CDS YP_719706.1 113461637 4241016 1687463..1688146 1 NC_008309.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1688146 ispD 4241016 ispD Haemophilus somnus 129PT 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_719706.1 1687463 D 205914 CDS YP_719707.1 113461638 4241017 1688152..1689957 1 NC_008309.1 glutathione-regulated potassium-efflux system protein 1689957 kefBC 4241017 kefBC Haemophilus somnus 129PT glutathione-regulated potassium-efflux system protein YP_719707.1 1688152 D 205914 CDS YP_719708.1 113461639 4241018 1689970..1690458 1 NC_008309.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1690458 ispF 4241018 ispF Haemophilus somnus 129PT 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_719708.1 1689970 D 205914 CDS YP_719709.1 113461640 4241019 1690458..1691465 1 NC_008309.1 catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1691465 truD 4241019 truD Haemophilus somnus 129PT tRNA pseudouridine synthase D YP_719709.1 1690458 D 205914 CDS YP_719710.1 113461641 4241020 1691489..1692229 1 NC_008309.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1692229 surE 4241020 surE Haemophilus somnus 129PT stationary phase survival protein SurE YP_719710.1 1691489 D 205914 CDS YP_719711.1 113461642 4241021 1692259..1692834 1 NC_008309.1 lipoprotein B 1692834 lppB 4241021 lppB Haemophilus somnus 129PT lipoprotein B YP_719711.1 1692259 D 205914 CDS YP_719712.1 113461643 4241022 1693040..1693912 1 NC_008309.1 lipoprotein B 1693912 lppB 4241022 lppB Haemophilus somnus 129PT lipoprotein B YP_719712.1 1693040 D 205914 CDS YP_719713.1 113461644 4241023 1694093..1697986 1 NC_008309.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 1697986 purL 4241023 purL Haemophilus somnus 129PT phosphoribosylformylglycinamidine synthase YP_719713.1 1694093 D 205914 CDS YP_719714.1 113461645 4241024 complement(1698081..1698692) 1 NC_008309.1 periplasmic nitrate reductase subunit NapC 1698692 napC 4241024 napC Haemophilus somnus 129PT periplasmic nitrate reductase subunit NapC YP_719714.1 1698081 R 205914 CDS YP_719715.1 113461646 4241025 complement(1698707..1699129) 1 NC_008309.1 periplasmic nitrate reductase subunit NapB 1699129 napB 4241025 napB Haemophilus somnus 129PT periplasmic nitrate reductase subunit NapB YP_719715.1 1698707 R 205914 CDS YP_719716.1 113461647 4241026 complement(1699129..1700001) 1 NC_008309.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component 1700001 napH 4241026 napH Haemophilus somnus 129PT quinol dehydrogenase membrane component YP_719716.1 1699129 R 205914 CDS YP_719717.1 113461648 4241027 complement(1700001..1700753) 1 NC_008309.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component 1700753 napG 4241027 napG Haemophilus somnus 129PT quinol dehydrogenase periplasmic component YP_719717.1 1700001 R 205914 CDS YP_719718.1 113461649 4241028 complement(1700804..1703287) 1 NC_008309.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit 1703287 napA 4241028 napA Haemophilus somnus 129PT nitrate reductase catalytic subunit YP_719718.1 1700804 R 205914 CDS YP_719719.1 113461650 4241029 complement(1703314..1703784) 1 NC_008309.1 periplasmic nitrate reductase chaperone NapD 1703784 napD 4241029 napD Haemophilus somnus 129PT periplasmic nitrate reductase chaperone NapD YP_719719.1 1703314 R 205914 CDS YP_719720.1 113461651 4241030 1703916..1705637 1 NC_008309.1 nitrate/nitrite sensor protein NarQ 1705637 narQ 4241030 narQ Haemophilus somnus 129PT nitrate/nitrite sensor protein NarQ YP_719720.1 1703916 D 205914 CDS YP_719721.1 113461652 4241031 1705647..1706672 1 NC_008309.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1706672 murB 4241031 murB Haemophilus somnus 129PT UDP-N-acetylenolpyruvoylglucosamine reductase YP_719721.1 1705647 D 205914 CDS YP_719722.1 113461653 4241032 1706889..1707977 1 NC_008309.1 hypothetical protein 1707977 4241032 HS_1512 Haemophilus somnus 129PT hypothetical protein YP_719722.1 1706889 D 205914 CDS YP_719723.1 113461654 4241033 1708378..1708905 1 NC_008309.1 catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 1708905 ppa 4241033 ppa Haemophilus somnus 129PT inorganic pyrophosphatase YP_719723.1 1708378 D 205914 CDS YP_719724.1 113461655 4241034 1708964..1709728 1 NC_008309.1 hypothetical protein 1709728 4241034 HS_1514 Haemophilus somnus 129PT hypothetical protein YP_719724.1 1708964 D 205914 CDS YP_719725.1 113461656 4241035 complement(1709791..1710456) 1 NC_008309.1 ribosomal large subunit pseudouridine synthase A 1710456 rluA 4241035 rluA Haemophilus somnus 129PT ribosomal large subunit pseudouridine synthase A YP_719725.1 1709791 R 205914 CDS YP_719726.1 113461657 4241036 complement(1710458..1713358) 1 NC_008309.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 1713358 hepA 4241036 hepA Haemophilus somnus 129PT ATP-dependent helicase HepA YP_719726.1 1710458 R 205914 CDS YP_719727.1 113461658 4241037 complement(1713526..1714122) 1 NC_008309.1 copper homeostasis protein 1714122 cutC 4241037 cutC Haemophilus somnus 129PT copper homeostasis protein YP_719727.1 1713526 R 205914 CDS YP_719728.1 113461659 4241038 complement(1714235..1714540) 1 NC_008309.1 hypothetical protein 1714540 4241038 HS_1518 Haemophilus somnus 129PT hypothetical protein YP_719728.1 1714235 R 205914 CDS YP_719729.1 113461660 4241039 1714824..1715582 1 NC_008309.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 1715582 udp 4241039 udp Haemophilus somnus 129PT uridine phosphorylase YP_719729.1 1714824 D 205914 CDS YP_719730.1 113461661 4241044 1721371..1722489 1 NC_008309.1 CdaR family transcriptional regulator 1722489 4241044 HS_1521 Haemophilus somnus 129PT CdaR family transcriptional regulator YP_719730.1 1721371 D 205914 CDS YP_719731.1 113461662 4241046 1723902..1725044 1 NC_008309.1 glycerate kinase 1725044 glxK 4241046 glxK Haemophilus somnus 129PT glycerate kinase YP_719731.1 1723902 D 205914 CDS YP_719732.1 113461663 4241048 1726631..1727497 1 NC_008309.1 hypothetical protein 1727497 4241048 HS_1527 Haemophilus somnus 129PT hypothetical protein YP_719732.1 1726631 D 205914 CDS YP_719733.1 113461664 4241049 1727606..1727926 1 NC_008309.1 hypothetical protein 1727926 4241049 HS_1528 Haemophilus somnus 129PT hypothetical protein YP_719733.1 1727606 D 205914 CDS YP_719734.1 113461665 4241050 1728121..1728684 1 NC_008309.1 hypothetical protein 1728684 4241050 HS_1529 Haemophilus somnus 129PT hypothetical protein YP_719734.1 1728121 D 205914 CDS YP_719735.1 113461666 4241051 1728711..1728974 1 NC_008309.1 hypothetical protein 1728974 4241051 HS_1530 Haemophilus somnus 129PT hypothetical protein YP_719735.1 1728711 D 205914 CDS YP_719736.1 113461667 4241052 1728992..1729492 1 NC_008309.1 hypothetical protein 1729492 4241052 HS_1531 Haemophilus somnus 129PT hypothetical protein YP_719736.1 1728992 D 205914 CDS YP_719737.1 113461668 4241053 complement(1729835..1730389) 1 NC_008309.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 1730389 4241053 HS_1532 Haemophilus somnus 129PT D,D-heptose 1,7-bisphosphate phosphatase YP_719737.1 1729835 R 205914 CDS YP_719738.1 113461669 4241054 1730544..1731581 1 NC_008309.1 part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 1731581 metN 4241054 metN Haemophilus somnus 129PT DL-methionine transporter ATP-binding subunit YP_719738.1 1730544 D 205914 CDS YP_719739.1 113461670 4241055 1731571..1732260 1 NC_008309.1 D-methionine ABC transporter permease 1732260 metI 4241055 metI Haemophilus somnus 129PT D-methionine ABC transporter permease YP_719739.1 1731571 D 205914 CDS YP_719740.1 113461671 4241056 1732296..1733126 1 NC_008309.1 outer membrane lipoprotein 1 precursor 1733126 plpA 4241056 plpA Haemophilus somnus 129PT outer membrane lipoprotein 1 precursor YP_719740.1 1732296 D 205914 CDS YP_719741.1 113461672 4241057 complement(1733284..1735116) 1 NC_008309.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1735116 glmS 4241057 glmS Haemophilus somnus 129PT glucosamine--fructose-6-phosphate aminotransferase YP_719741.1 1733284 R 205914 CDS YP_719742.1 113461673 4241058 complement(1735142..1735924) 1 NC_008309.1 DeoR family transcriptional regulator 1735924 4241058 HS_1537 Haemophilus somnus 129PT DeoR family transcriptional regulator YP_719742.1 1735142 R 205914 CDS YP_719743.1 113461674 4241059 complement(1736080..1736355) 1 NC_008309.1 DNA-binding protein HU 1736355 hupA 4241059 hupA Haemophilus somnus 129PT DNA-binding protein HU YP_719743.1 1736080 R 205914 CDS YP_719744.1 113461675 4241060 complement(1736514..1737113) 1 NC_008309.1 hypothetical protein 1737113 4241060 HS_1539 Haemophilus somnus 129PT hypothetical protein YP_719744.1 1736514 R 205914 CDS YP_719745.1 113461676 4241061 complement(1737121..1738185) 1 NC_008309.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1738185 hemE 4241061 hemE Haemophilus somnus 129PT uroporphyrinogen decarboxylase YP_719745.1 1737121 R 205914 CDS YP_719746.1 113461677 4241062 1738491..1739018 1 NC_008309.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1739018 hslV 4241062 hslV Haemophilus somnus 129PT ATP-dependent protease peptidase subunit YP_719746.1 1738491 D 205914 CDS YP_719747.1 113461678 4241063 1739036..1740367 1 NC_008309.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1740367 hslU 4241063 hslU Haemophilus somnus 129PT ATP-dependent protease ATP-binding subunit HslU YP_719747.1 1739036 D 205914 CDS YP_719748.1 113461679 4241064 1740598..1741956 1 NC_008309.1 outer membrane protein 1741956 4241064 HS_1543 Haemophilus somnus 129PT outer membrane protein YP_719748.1 1740598 D 205914 CDS YP_719749.1 113461680 4241065 1742156..1742470 1 NC_008309.1 hypothetical protein 1742470 4241065 HS_1544 Haemophilus somnus 129PT hypothetical protein YP_719749.1 1742156 D 205914 CDS YP_719750.1 113461681 4241066 1742593..1743435 1 NC_008309.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 1743435 rpoH 4241066 rpoH Haemophilus somnus 129PT RNA polymerase factor sigma-32 YP_719750.1 1742593 D 205914 CDS YP_719751.1 113461682 4241067 complement(1743543..1744232) 1 NC_008309.1 hypothetical protein 1744232 yhhW 4241067 yhhW Haemophilus somnus 129PT hypothetical protein YP_719751.1 1743543 R 205914 CDS YP_719752.1 113461683 4241068 complement(1744385..1744681) 1 NC_008309.1 hypothetical protein 1744681 4241068 HS_1547 Haemophilus somnus 129PT hypothetical protein YP_719752.1 1744385 R 205914 CDS YP_719753.1 113461684 4241069 1744932..1746293 1 NC_008309.1 outer membrane protein P1 1746293 ompP1 4241069 ompP1 Haemophilus somnus 129PT outer membrane protein P1 YP_719753.1 1744932 D 205914 CDS YP_719754.1 113461685 4241070 1746347..1746889 1 NC_008309.1 methylated-DNA-protein-cysteine methyltransferase 1746889 dat1 4241070 dat1 Haemophilus somnus 129PT methylated-DNA-protein-cysteine methyltransferase YP_719754.1 1746347 D 205914 CDS YP_719755.1 113461686 4241071 1746886..1747560 1 NC_008309.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1747560 mutH 4241071 mutH Haemophilus somnus 129PT DNA mismatch repair protein YP_719755.1 1746886 D 205914 CDS YP_719756.1 113461687 4241072 1747749..1748786 1 NC_008309.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 1748786 purM 4241072 purM Haemophilus somnus 129PT phosphoribosylaminoimidazole synthetase YP_719756.1 1747749 D 205914 CDS YP_719757.1 113461688 4241073 complement(1748979..1750094) 1 NC_008309.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1750094 asd 4241073 asd Haemophilus somnus 129PT aspartate-semialdehyde dehydrogenase YP_719757.1 1748979 R 205914 CDS YP_719758.1 113461689 4241074 complement(1750221..1751159) 1 NC_008309.1 ABC transporter, membrane protein; cell division protein FtsX 1751159 ftsX 4241074 ftsX Haemophilus somnus 129PT cell division protein FtsX YP_719758.1 1750221 R 205914 CDS YP_719759.1 113461690 4241075 complement(1751169..1751819) 1 NC_008309.1 cell division ATP-binding protein FtsE 1751819 ftsE 4241075 ftsE Haemophilus somnus 129PT cell division ATP-binding protein FtsE YP_719759.1 1751169 R 205914 CDS YP_719760.1 113461691 4241076 complement(1751946..1752986) 1 NC_008309.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 1752986 holA 4241076 holA Haemophilus somnus 129PT DNA polymerase III subunit delta YP_719760.1 1751946 R 205914 CDS YP_719761.1 113461692 4241077 complement(1752986..1753489) 1 NC_008309.1 rare lipoprotein B 1753489 4241077 HS_1556 Haemophilus somnus 129PT rare lipoprotein B YP_719761.1 1752986 R 205914 CDS YP_719762.1 113461693 4241078 complement(1753538..1756120) 1 NC_008309.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 1756120 leuS 4241078 leuS Haemophilus somnus 129PT leucyl-tRNA synthetase YP_719762.1 1753538 R 205914 CDS YP_719763.1 113461694 4241079 complement(1756407..1757228) 1 NC_008309.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 1757228 apaH 4241079 apaH Haemophilus somnus 129PT diadenosine tetraphosphatase YP_719763.1 1756407 R 205914 CDS YP_719764.1 113461695 4241080 complement(1757279..1758124) 1 NC_008309.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 1758124 ksgA 4241080 ksgA Haemophilus somnus 129PT dimethyladenosine transferase YP_719764.1 1757279 R 205914 CDS YP_719765.1 113461696 4241081 complement(1758200..1759144) 1 NC_008309.1 stationary-phase survival protein; peptidyl-prolyl cis-trans isomerase, PPIC-type 1759144 surA 4241081 surA Haemophilus somnus 129PT peptidyl-prolyl cis-trans isomerase, PPIC-type YP_719765.1 1758200 R 205914 CDS YP_719766.1 113461697 4241082 complement(1759227..1759817) 1 NC_008309.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 1759817 pyrR 4241082 pyrR Haemophilus somnus 129PT bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase YP_719766.1 1759227 R 205914 CDS YP_719767.1 113461698 4241083 complement(1759927..1761177) 1 NC_008309.1 tryptophan-specific transport protein 1761177 mtr 4241083 mtr Haemophilus somnus 129PT tryptophan-specific transport protein YP_719767.1 1759927 R 205914 CDS YP_719768.1 113461699 4241084 1761577..1762494 1 NC_008309.1 hypothetical protein 1762494 4241084 HS_1563 Haemophilus somnus 129PT hypothetical protein YP_719768.1 1761577 D 205914 CDS YP_719769.1 113461700 4241085 complement(1762830..1767092) 1 NC_008309.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1767092 rpoC 4241085 rpoC Haemophilus somnus 129PT DNA-directed RNA polymerase subunit beta' YP_719769.1 1762830 R 205914 CDS YP_719770.1 113461701 4241086 complement(1767183..1771211) 1 NC_008309.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1771211 rpoB 4241086 rpoB Haemophilus somnus 129PT DNA-directed RNA polymerase subunit beta YP_719770.1 1767183 R 205914 CDS YP_719771.1 113461702 4241087 complement(1771715..1773040) 1 NC_008309.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to DcuA; DcuA and DcuB function as independent and mutually redundant C4-dicarboxylate (aspartate, malate, fumarate and succinate) transporters; anaerobic C4-dicarboxylate transporter 1773040 dcuB 4241087 dcuB Haemophilus somnus 129PT anaerobic C4-dicarboxylate transporter YP_719771.1 1771715 R 205914 CDS YP_719772.1 113461703 4241088 complement(1773283..1773804) 1 NC_008309.1 DMT family permease 1773804 4241088 HS_1567 Haemophilus somnus 129PT DMT family permease YP_719772.1 1773283 R 205914 CDS YP_719773.1 113461704 4241089 complement(1773789..1774133) 1 NC_008309.1 hypothetical protein 1774133 4241089 HS_1568 Haemophilus somnus 129PT hypothetical protein YP_719773.1 1773789 R 205914 CDS YP_719774.1 113461705 4241096 complement(1780165..1780677) 1 NC_008309.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 1780677 hemG 4241096 hemG Haemophilus somnus 129PT protoporphyrinogen oxidase YP_719774.1 1780165 R 205914 CDS YP_719775.1 113461706 4241097 complement(1780677..1782140) 1 NC_008309.1 potassium uptake system protein 1782140 trkH 4241097 trkH Haemophilus somnus 129PT potassium uptake system protein YP_719775.1 1780677 R 205914 CDS YP_719776.1 113461707 4241098 complement(1782152..1782760) 1 NC_008309.1 hypothetical protein 1782760 4241098 HS_1571 Haemophilus somnus 129PT hypothetical protein YP_719776.1 1782152 R 205914 CDS YP_719777.1 113461708 4241099 1782833..1783072 1 NC_008309.1 TusA; transfers sulfur to TusBCD complex; involved in thiouridation of U34 position of some tRNAs; sulfur transfer protein SirA 1783072 4241099 HS_1572 Haemophilus somnus 129PT sulfur transfer protein SirA YP_719777.1 1782833 D 205914 CDS YP_719778.1 113461709 4241100 1783677..1785836 1 NC_008309.1 ornithine decarboxylase 1785836 speF 4241100 speF Haemophilus somnus 129PT ornithine decarboxylase YP_719778.1 1783677 D 205914 CDS YP_719779.1 113461710 4241101 1785893..1787203 1 NC_008309.1 catalyzes the uptake of putrescine via a proton symport mechanism, as well as the efflux of putrescine by a putrescine/ornithine antiport system; putrescine transporter 1787203 potE 4241101 potE Haemophilus somnus 129PT putrescine transporter YP_719779.1 1785893 D 205914 CDS YP_719780.1 113461711 4241102 1787321..1788058 1 NC_008309.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1788058 4241102 HS_1575 Haemophilus somnus 129PT 16S ribosomal RNA methyltransferase RsmE YP_719780.1 1787321 D 205914 CDS YP_719781.1 113461712 4241103 complement(1788120..1789130) 1 NC_008309.1 possible myo-inositol 2-dehydrogenase; dehydrogenase 1789130 iolG 4241103 iolG Haemophilus somnus 129PT dehydrogenase YP_719781.1 1788120 R 205914 CDS YP_719782.1 113461713 4241104 complement(1789132..1790028) 1 NC_008309.1 myo-inositol catabolism protein 1790028 iolE 4241104 iolE Haemophilus somnus 129PT myo-inositol catabolism protein YP_719782.1 1789132 R 205914 CDS YP_719783.1 113461714 4241105 complement(1790102..1792039) 1 NC_008309.1 myo-inositol catabolism protein 1792039 iolD 4241105 iolD Haemophilus somnus 129PT myo-inositol catabolism protein YP_719783.1 1790102 R 205914 CDS YP_719784.1 113461715 4241106 complement(1792226..1793182) 1 NC_008309.1 sugar ABC transporter permease 1793182 rbsC 4241106 rbsC Haemophilus somnus 129PT sugar ABC transporter permease YP_719784.1 1792226 R 205914 CDS YP_719785.1 113461716 4241107 complement(1793220..1794737) 1 NC_008309.1 sugar ABC transporter ATP-binding protein 1794737 4241107 HS_1580 Haemophilus somnus 129PT sugar ABC transporter ATP-binding protein YP_719785.1 1793220 R 205914 CDS YP_719786.1 113461717 4241108 complement(1794818..1795750) 1 NC_008309.1 ABC transporter periplasmic sugar-binding protein 1795750 4241108 HS_1581 Haemophilus somnus 129PT ABC transporter periplasmic sugar-binding protein YP_719786.1 1794818 R 205914 CDS YP_719787.1 113461718 4241109 complement(1795838..1796773) 1 NC_008309.1 ABC transporter periplasmic sugar-binding protein 1796773 4241109 HS_1582 Haemophilus somnus 129PT ABC transporter periplasmic sugar-binding protein YP_719787.1 1795838 R 205914 CDS YP_719788.1 113461719 4241110 complement(1797067..1798203) 1 NC_008309.1 dehydrogenase 1798203 4241110 HS_1583 Haemophilus somnus 129PT dehydrogenase YP_719788.1 1797067 R 205914 CDS YP_719789.1 113461720 4241111 complement(1798287..1799783) 1 NC_008309.1 methylmalonate-semialdehyde dehydrogenase 1799783 4241111 HS_1584 Haemophilus somnus 129PT methylmalonate-semialdehyde dehydrogenase YP_719789.1 1798287 R 205914 CDS YP_719790.1 113461721 4241112 complement(1799956..1800804) 1 NC_008309.1 hypothetical protein 1800804 4241112 HS_1585 Haemophilus somnus 129PT hypothetical protein YP_719790.1 1799956 R 205914 CDS YP_719791.1 113461722 4241113 complement(1800815..1802200) 1 NC_008309.1 major facilitator superfamily permease 1802200 4241113 HS_1586 Haemophilus somnus 129PT major facilitator superfamily permease YP_719791.1 1800815 R 205914 CDS YP_719792.1 113461723 4241114 1802437..1803267 1 NC_008309.1 myo-inositol catabolism protein 1803267 4241114 HS_1587 Haemophilus somnus 129PT myo-inositol catabolism protein YP_719792.1 1802437 D 205914 CDS YP_719793.1 113461724 4241115 complement(1803350..1805188) 1 NC_008309.1 ABC transporter ATP-binding/permease 1805188 4241115 HS_1588 Haemophilus somnus 129PT ABC transporter ATP-binding/permease YP_719793.1 1803350 R 205914 CDS YP_719794.1 113461725 4241116 complement(1805262..1805738) 1 NC_008309.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1805738 coaD 4241116 coaD Haemophilus somnus 129PT phosphopantetheine adenylyltransferase YP_719794.1 1805262 R 205914 CDS YP_719795.1 113461726 4241117 complement(1805738..1807018) 1 NC_008309.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 1807018 kdtA 4241117 kdtA Haemophilus somnus 129PT 3-deoxy-D-manno-octulosonic-acid transferase YP_719795.1 1805738 R 205914 CDS YP_719796.1 113461727 4241118 complement(1807116..1807883) 1 NC_008309.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1807883 tpiA 4241118 tpiA Haemophilus somnus 129PT triosephosphate isomerase YP_719796.1 1807116 R 205914 CDS YP_719797.1 113461728 4241119 1808051..1808488 1 NC_008309.1 acetyltransferase 1808488 4241119 HS_1592 Haemophilus somnus 129PT acetyltransferase YP_719797.1 1808051 D 205914 CDS YP_719798.1 113461729 4241120 complement(1808568..1809935) 1 NC_008309.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1809935 purB 4241120 purB Haemophilus somnus 129PT adenylosuccinate lyase YP_719798.1 1808568 R 205914 CDS YP_719799.1 113461730 4241121 complement(1809958..1810569) 1 NC_008309.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1810569 4241121 HS_1594 Haemophilus somnus 129PT hypothetical protein YP_719799.1 1809958 R 205914 CDS YP_719800.1 113461731 4241122 1810730..1811257 1 NC_008309.1 hypothetical protein 1811257 4241122 HS_1595 Haemophilus somnus 129PT hypothetical protein YP_719800.1 1810730 D 205914 CDS YP_719801.1 113461732 4241123 complement(1811479..1812663) 1 NC_008309.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 1812663 uxuA 4241123 uxuA Haemophilus somnus 129PT mannonate dehydratase YP_719801.1 1811479 R 205914 CDS YP_719802.1 113461733 4241124 complement(1812682..1813440) 1 NC_008309.1 GntR family transcriptional regulator 1813440 uxuR 4241124 uxuR Haemophilus somnus 129PT GntR family transcriptional regulator YP_719802.1 1812682 R 205914 CDS YP_719803.1 113461734 4241125 1813693..1814538 1 NC_008309.1 Converts D-mannonate to D-mannuronate; D-mannonate oxidoreductase 1814538 4241125 HS_1598 Haemophilus somnus 129PT D-mannonate oxidoreductase YP_719803.1 1813693 D 205914 CDS YP_719804.1 113461735 4241126 1814548..1815363 1 NC_008309.1 hypothetical protein 1815363 4241126 HS_1599 Haemophilus somnus 129PT hypothetical protein YP_719804.1 1814548 D 205914 CDS YP_719805.1 113461736 4241127 1815405..1817165 1 NC_008309.1 beta-hexosamidase A 1817165 4241127 HS_1600 Haemophilus somnus 129PT beta-hexosamidase A YP_719805.1 1815405 D 205914 CDS YP_719806.1 113461737 4241128 1817191..1818606 1 NC_008309.1 glucuronide permease 1818606 uidB 4241128 uidB Haemophilus somnus 129PT glucuronide permease YP_719806.1 1817191 D 205914 CDS YP_719807.1 113461738 4241129 1818628..1820019 1 NC_008309.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 1820019 uxaC 4241129 uxaC Haemophilus somnus 129PT glucuronate isomerase YP_719807.1 1818628 D 205914 CDS YP_719808.1 113461739 4241130 1820067..1820708 1 NC_008309.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 1820708 eda 4241130 eda Haemophilus somnus 129PT keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase YP_719808.1 1820067 D 205914 CDS YP_719809.1 113461740 4241131 1821128..1821382 1 NC_008309.1 hypothetical protein 1821382 4241131 HS_1604 Haemophilus somnus 129PT hypothetical protein YP_719809.1 1821128 D 205914 CDS YP_719810.1 113461741 4241132 1821488..1822063 1 NC_008309.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1822063 rpoE 4241132 rpoE Haemophilus somnus 129PT RNA polymerase sigma factor RpoE YP_719810.1 1821488 D 205914 CDS YP_719811.1 113461742 4241133 1821979..1822680 1 NC_008309.1 sigma-E factor negative regulatory protein 1822680 rseA 4241133 rseA Haemophilus somnus 129PT sigma-E factor negative regulatory protein YP_719811.1 1821979 D 205914 CDS YP_719812.1 113461743 4241134 1822744..1823682 1 NC_008309.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE 1823682 rseB 4241134 rseB Haemophilus somnus 129PT periplasmic negative regulator of sigmaE YP_719812.1 1822744 D 205914 CDS YP_719813.1 113461744 4241135 1823621..1824124 1 NC_008309.1 positive sigma-E factor regulatory protein 1824124 rseC 4241135 rseC Haemophilus somnus 129PT positive sigma-E factor regulatory protein YP_719813.1 1823621 D 205914 CDS YP_719814.1 113461745 4241136 1824009..1824635 1 NC_008309.1 molybdopterin-guanine dinucleotide biosynthesis protein B 1824635 mobB 4241136 mobB Haemophilus somnus 129PT molybdopterin-guanine dinucleotide biosynthesis protein B YP_719814.1 1824009 D 205914 CDS YP_719815.1 113461746 4241137 1824790..1825614 1 NC_008309.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1825614 dapF 4241137 dapF Haemophilus somnus 129PT diaminopimelate epimerase YP_719815.1 1824790 D 205914 CDS YP_719816.1 113461747 4241138 complement(1825664..1826629) 1 NC_008309.1 ADP-heptose:LPS heptosyl transferase I 1826629 rfaC 4241138 rfaC Haemophilus somnus 129PT ADP-heptose:LPS heptosyl transferase I YP_719816.1 1825664 R 205914 CDS YP_719817.1 113461748 4241139 complement(1826631..1827671) 1 NC_008309.1 ADP-heptose--LPS heptosyltransferase II 1827671 rfaF 4241139 rfaF Haemophilus somnus 129PT ADP-heptose--LPS heptosyltransferase II YP_719817.1 1826631 R 205914 CDS YP_719818.1 113461749 4241140 complement(1827809..1828738) 1 NC_008309.1 catalyzes the interconversion between ADP-D-glycero-beta-D-manno-heptose and ADP-L-glycero-beta-D-manno-heptose; ADP-L-glycero-D-mannoheptose-6-epimerase 1828738 rfaD 4241140 rfaD Haemophilus somnus 129PT ADP-L-glycero-D-mannoheptose-6-epimerase YP_719818.1 1827809 R 205914 CDS YP_719819.1 113461750 4241141 complement(1828798..1830405) 1 NC_008309.1 DNA recombination protein rmuC 1830405 rmuC 4241141 rmuC Haemophilus somnus 129PT DNA recombination protein rmuC YP_719819.1 1828798 R 205914 CDS YP_719820.1 113461751 4241142 complement(1830478..1831695) 1 NC_008309.1 dehydrogenase 1831695 4241142 HS_1615 Haemophilus somnus 129PT dehydrogenase YP_719820.1 1830478 R 205914 CDS YP_719821.1 113461752 4241143 complement(1832041..1841277) 1 NC_008309.1 large adhesin 1841277 4241143 HS_1616 Haemophilus somnus 129PT large adhesin YP_719821.1 1832041 R 205914 CDS YP_719822.1 113461753 4241144 1841800..1843833 1 NC_008309.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1843833 uvrB 4241144 uvrB Haemophilus somnus 129PT excinuclease ABC subunit B YP_719822.1 1841800 D 205914 CDS YP_719823.1 113461754 4241145 complement(1843804..1844280) 1 NC_008309.1 tRNA-adenosine deaminase 1844280 4241145 HS_1618 Haemophilus somnus 129PT tRNA-adenosine deaminase YP_719823.1 1843804 R 205914 CDS YP_719824.1 113461755 4241146 complement(1844326..1845177) 1 NC_008309.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1845177 thyA 4241146 thyA Haemophilus somnus 129PT thymidylate synthase YP_719824.1 1844326 R 205914 CDS YP_719825.1 113461756 4241147 complement(1845184..1845996) 1 NC_008309.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1845996 lgt 4241147 lgt Haemophilus somnus 129PT prolipoprotein diacylglyceryl transferase YP_719825.1 1845184 R 205914 CDS YP_719826.1 113461757 4241148 complement(1846006..1846800) 1 NC_008309.1 permease 1846800 4241148 HS_1621 Haemophilus somnus 129PT permease YP_719826.1 1846006 R 205914 CDS YP_719827.1 113461758 4241149 complement(1846811..1847389) 1 NC_008309.1 hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 1847389 nudH 4241149 nudH Haemophilus somnus 129PT dinucleoside polyphosphate hydrolase YP_719827.1 1846811 R 205914 CDS YP_719828.1 113461759 4241150 1847666..1848820 1 NC_008309.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1848820 metK 4241150 metK Haemophilus somnus 129PT S-adenosylmethionine synthetase YP_719828.1 1847666 D 205914 CDS YP_719829.1 113461760 4241151 1848898..1849407 1 NC_008309.1 hypothetical protein 1849407 sprT 4241151 sprT Haemophilus somnus 129PT hypothetical protein YP_719829.1 1848898 D 205914 CDS YP_719830.1 113461761 4241152 1849542..1851140 1 NC_008309.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1851140 purH 4241152 purH Haemophilus somnus 129PT bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_719830.1 1849542 D 205914 CDS YP_719831.1 113461762 4241153 1851189..1852487 1 NC_008309.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 1852487 purD 4241153 purD Haemophilus somnus 129PT phosphoribosylamine--glycine ligase YP_719831.1 1851189 D 205914 CDS YP_719832.1 113461763 4241154 1852630..1853889 1 NC_008309.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1853889 glyA 4241154 glyA Haemophilus somnus 129PT serine hydroxymethyltransferase YP_719832.1 1852630 D 205914 CDS YP_719833.1 113461764 4241155 1854069..1855685 1 NC_008309.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 1855685 pckA 4241155 pckA Haemophilus somnus 129PT phosphoenolpyruvate carboxykinase YP_719833.1 1854069 D 205914 CDS YP_719834.1 113461765 4241156 1855857..1856342 1 NC_008309.1 tRNA/rRNA methyltransferase 1856342 spoU 4241156 spoU Haemophilus somnus 129PT tRNA/rRNA methyltransferase YP_719834.1 1855857 D 205914 CDS YP_719835.1 113461766 4241157 1856359..1856772 1 NC_008309.1 hypothetical protein 1856772 4241157 HS_1630 Haemophilus somnus 129PT hypothetical protein YP_719835.1 1856359 D 205914 CDS YP_719836.1 113461767 4241158 1856829..1857410 1 NC_008309.1 FKBP-type peptidyl-prolyl cis-trans isomerase 1857410 slyD 4241158 slyD Haemophilus somnus 129PT FKBP-type peptidyl-prolyl cis-trans isomerase YP_719836.1 1856829 D 205914 CDS YP_719837.1 113461768 4241159 1858163..1866907 1 NC_008309.1 large adhesin 1866907 4241159 HS_1632 Haemophilus somnus 129PT large adhesin YP_719837.1 1858163 D 205914 CDS YP_719838.1 113461769 4241160 complement(1867240..1867530) 1 NC_008309.1 hypothetical protein 1867530 4241160 HS_1633 Haemophilus somnus 129PT hypothetical protein YP_719838.1 1867240 R 205914 CDS YP_719839.1 113461770 4241161 complement(1867542..1867904) 1 NC_008309.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur relay protein TusC 1867904 4241161 HS_1634 Haemophilus somnus 129PT sulfur relay protein TusC YP_719839.1 1867542 R 205914 CDS YP_719840.1 113461771 4241162 complement(1867901..1868281) 1 NC_008309.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 1868281 4241162 HS_1635 Haemophilus somnus 129PT sulfur transfer complex subunit TusD YP_719840.1 1867901 R 205914 CDS YP_719841.1 113461772 4241163 complement(1868281..1868949) 1 NC_008309.1 hypothetical protein 1868949 4241163 HS_1636 Haemophilus somnus 129PT hypothetical protein YP_719841.1 1868281 R 205914 CDS YP_719842.1 113461773 4241164 complement(1869018..1869704) 1 NC_008309.1 FKBP-type peptidyl-prolyl cis-trans isomerase 1869704 slyD 4241164 slyD Haemophilus somnus 129PT FKBP-type peptidyl-prolyl cis-trans isomerase YP_719842.1 1869018 R 205914 CDS YP_719843.1 113461774 4241165 1869801..1870022 1 NC_008309.1 hypothetical protein 1870022 slyX 4241165 slyX Haemophilus somnus 129PT hypothetical protein YP_719843.1 1869801 D 205914 CDS YP_719844.1 113461775 4241166 complement(1870024..1870479) 1 NC_008309.1 MutT/NUDIX family NTP pyrophosphohydrolase 1870479 4241166 HS_1639 Haemophilus somnus 129PT MutT/NUDIX family NTP pyrophosphohydrolase YP_719844.1 1870024 R 205914 CDS YP_719845.1 113461776 4241167 complement(1870481..1871128) 1 NC_008309.1 ribosomal large subunit pseudouridine synthase E 1871128 rluE 4241167 rluE Haemophilus somnus 129PT ribosomal large subunit pseudouridine synthase E YP_719845.1 1870481 R 205914 CDS YP_719846.1 113461777 4241168 complement(1871215..1873428) 1 NC_008309.1 isocitrate dehydrogenase 1873428 icd 4241168 icd Haemophilus somnus 129PT isocitrate dehydrogenase YP_719846.1 1871215 R 205914 CDS YP_719847.1 113461778 4241169 1873643..1874821 1 NC_008309.1 hypothetical protein 1874821 4241169 HS_1642 Haemophilus somnus 129PT hypothetical protein YP_719847.1 1873643 D 205914 CDS YP_719848.1 113461779 4241170 1874882..1875634 1 NC_008309.1 hypothetical protein 1875634 4241170 HS_1643 Haemophilus somnus 129PT hypothetical protein YP_719848.1 1874882 D 205914 CDS YP_719849.1 113461780 4241171 complement(1876089..1877273) 1 NC_008309.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1877273 tufA 4241171 tufA Haemophilus somnus 129PT elongation factor Tu YP_719849.1 1876089 R 205914 CDS YP_719850.1 113461781 4241172 complement(1877345..1879447) 1 NC_008309.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1879447 fusA 4241172 fusA Haemophilus somnus 129PT elongation factor G YP_719850.1 1877345 R 205914 CDS YP_719851.1 113461782 4241173 complement(1879539..1880009) 1 NC_008309.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1880009 rpsG 4241173 rpsG Haemophilus somnus 129PT 30S ribosomal protein S7 YP_719851.1 1879539 R 205914 CDS YP_719852.1 113461783 4241174 complement(1880140..1880514) 1 NC_008309.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1880514 rpsL 4241174 rpsL Haemophilus somnus 129PT 30S ribosomal protein S12 YP_719852.1 1880140 R 205914 CDS YP_719853.1 113461784 4241175 complement(1880673..1881533) 1 NC_008309.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 1881533 hslO 4241175 hslO Haemophilus somnus 129PT Hsp33-like chaperonin YP_719853.1 1880673 R 205914 CDS YP_719854.1 113461785 4241176 complement(1881589..1881999) 1 NC_008309.1 heat shock protein 15 1881999 hslR 4241176 hslR Haemophilus somnus 129PT heat shock protein 15 YP_719854.1 1881589 R 205914 CDS YP_719855.1 113461786 4241177 1881915..1882889 1 NC_008309.1 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase 1882889 cysQ 4241177 cysQ Haemophilus somnus 129PT 3'-phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase YP_719855.1 1881915 D 205914 CDS YP_719856.1 113461787 4241178 1882961..1884451 1 NC_008309.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1884451 zwf 4241178 zwf Haemophilus somnus 129PT glucose-6-phosphate 1-dehydrogenase YP_719856.1 1882961 D 205914 CDS YP_719857.1 113461788 4241179 1884562..1885206 1 NC_008309.1 6-phosphogluconolactonase 1885206 pgl 4241179 pgl Haemophilus somnus 129PT 6-phosphogluconolactonase YP_719857.1 1884562 D 205914 CDS YP_719858.1 113461789 4241180 1885220..1885618 1 NC_008309.1 hypothetical protein 1885618 4241180 HS_1653 Haemophilus somnus 129PT hypothetical protein YP_719858.1 1885220 D 205914 CDS YP_719859.1 113461790 4241181 1885622..1887076 1 NC_008309.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1887076 gnd 4241181 gnd Haemophilus somnus 129PT 6-phosphogluconate dehydrogenase YP_719859.1 1885622 D 205914 CDS YP_719860.1 113461791 4241182 1887245..1887994 1 NC_008309.1 VacJ lipoprotein 1887994 vacJ 4241182 vacJ Haemophilus somnus 129PT VacJ lipoprotein YP_719860.1 1887245 D 205914 CDS YP_719861.1 113461792 4241183 1888020..1888508 1 NC_008309.1 hypothetical protein 1888508 4241183 HS_1656 Haemophilus somnus 129PT hypothetical protein YP_719861.1 1888020 D 205914 CDS YP_719862.1 113461793 4241184 complement(1888559..1888858) 1 NC_008309.1 hypothetical protein 1888858 4241184 HS_1657 Haemophilus somnus 129PT hypothetical protein YP_719862.1 1888559 R 205914 CDS YP_719863.1 113461794 4241185 complement(1888884..1889441) 1 NC_008309.1 integral membrane protein 1889441 4241185 HS_1658 Haemophilus somnus 129PT integral membrane protein YP_719863.1 1888884 R 205914 CDS YP_719864.1 113461795 4241186 complement(1889441..1890391) 1 NC_008309.1 responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 1890391 corA 4241186 corA Haemophilus somnus 129PT magnesium/nickel/cobalt transporter CorA YP_719864.1 1889441 R 205914 CDS YP_719865.1 113461796 4241187 complement(1890486..1890689) 1 NC_008309.1 hypothetical protein 1890689 4241187 HS_1660 Haemophilus somnus 129PT hypothetical protein YP_719865.1 1890486 R 205914 CDS YP_719866.1 113461797 4241188 complement(1890726..1891064) 1 NC_008309.1 hypothetical protein 1891064 4241188 HS_1661 Haemophilus somnus 129PT hypothetical protein YP_719866.1 1890726 R 205914 CDS YP_719867.1 113461798 4241189 complement(1891162..1892091) 1 NC_008309.1 LysR family transcriptional regulator 1892091 4241189 HS_1662 Haemophilus somnus 129PT LysR family transcriptional regulator YP_719867.1 1891162 R 205914 CDS YP_719868.1 113461799 4241190 1892159..1893628 1 NC_008309.1 permease 1893628 4241190 HS_1663 Haemophilus somnus 129PT permease YP_719868.1 1892159 D 205914 CDS YP_719869.1 113461800 4241191 1893567..1894244 1 NC_008309.1 phosphoglycerate mutase 1894244 gpm 4241191 gpm Haemophilus somnus 129PT phosphoglycerate mutase YP_719869.1 1893567 D 205914 CDS YP_719870.1 113461801 4241192 complement(1894370..1894819) 1 NC_008309.1 hypothetical protein 1894819 4241192 HS_1665 Haemophilus somnus 129PT hypothetical protein YP_719870.1 1894370 R 205914 CDS YP_719871.1 113461802 4241193 complement(1894831..1895586) 1 NC_008309.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1895586 trmB 4241193 trmB Haemophilus somnus 129PT tRNA (guanine-N(7)-)-methyltransferase YP_719871.1 1894831 R 205914 CDS YP_719872.1 113461803 4241194 1895732..1896844 1 NC_008309.1 A/G-specific DNA-adenine glycosylase 1896844 mutY 4241194 mutY Haemophilus somnus 129PT A/G-specific DNA-adenine glycosylase YP_719872.1 1895732 D 205914 CDS YP_719873.1 113461804 4241195 1896847..1897122 1 NC_008309.1 hypothetical protein 1897122 4241195 HS_1668 Haemophilus somnus 129PT hypothetical protein YP_719873.1 1896847 D 205914 CDS YP_719874.1 113461805 4241196 1897129..1898220 1 NC_008309.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 1898220 mltC 4241196 mltC Haemophilus somnus 129PT murein transglycosylase C YP_719874.1 1897129 D 205914 CDS YP_719875.1 113461806 4241197 1898321..1899979 1 NC_008309.1 phosphomannomutase 1899979 manB 4241197 manB Haemophilus somnus 129PT phosphomannomutase YP_719875.1 1898321 D 205914 CDS YP_719876.1 113461807 4241198 complement(1900106..1901587) 1 NC_008309.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 1901587 ilvC 4241198 ilvC Haemophilus somnus 129PT ketol-acid reductoisomerase YP_719876.1 1900106 R 205914 CDS YP_719877.1 113461808 4241199 1901844..1903013 1 NC_008309.1 cytochrome c-type protein 1903013 torC 4241199 torC Haemophilus somnus 129PT cytochrome c-type protein YP_719877.1 1901844 D 205914 CDS YP_719878.1 113461809 4241200 1903028..1905496 1 NC_008309.1 trimethylamine-N-oxide reductase precursor 1905496 torA 4241200 torA Haemophilus somnus 129PT trimethylamine-N-oxide reductase precursor YP_719878.1 1903028 D 205914 CDS YP_719879.1 113461810 4241201 1905493..1906074 1 NC_008309.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD 1906074 torD 4241201 torD Haemophilus somnus 129PT chaperone protein TorD YP_719879.1 1905493 D 205914 CDS YP_719880.1 113461811 4241202 complement(1906359..1906712) 1 NC_008309.1 histone acetyltransferase 1906712 4241202 HS_1675 Haemophilus somnus 129PT histone acetyltransferase YP_719880.1 1906359 R 205914 CDS YP_719881.1 113461812 4241203 complement(1906732..1907013) 1 NC_008309.1 hypothetical protein 1907013 4241203 HS_1676 Haemophilus somnus 129PT hypothetical protein YP_719881.1 1906732 R 205914 CDS YP_719882.1 113461813 4241204 complement(1907010..1907219) 1 NC_008309.1 hypothetical protein 1907219 4241204 HS_1677 Haemophilus somnus 129PT hypothetical protein YP_719882.1 1907010 R 205914 CDS YP_719883.1 113461814 4241205 complement(1907383..1907673) 1 NC_008309.1 hypothetical protein 1907673 4241205 HS_1678 Haemophilus somnus 129PT hypothetical protein YP_719883.1 1907383 R 205914 CDS YP_719884.1 113461815 4241206 1907757..1908410 1 NC_008309.1 transposase 1908410 4241206 HS_1679 Haemophilus somnus 129PT transposase YP_719884.1 1907757 D 205914 CDS YP_719885.1 113461816 4241207 1909106..1909975 1 NC_008309.1 hypothetical protein 1909975 4241207 HS_1680 Haemophilus somnus 129PT hypothetical protein YP_719885.1 1909106 D 205914 CDS YP_719886.1 113461817 4241208 1910070..1910312 1 NC_008309.1 NAD-dependent aldehyde dehydrogenase 1910312 4241208 HS_1681 Haemophilus somnus 129PT NAD-dependent aldehyde dehydrogenase YP_719886.1 1910070 D 205914 CDS YP_719887.1 113461818 4241209 1910279..1910476 1 NC_008309.1 possible succinate-semialdehyde dehydrogenase (NAD(P)); aldehyde dehydrogenase 1910476 attK 4241209 attK Haemophilus somnus 129PT aldehyde dehydrogenase YP_719887.1 1910279 D 205914 CDS YP_719888.1 113461819 4241210 complement(1910523..1911674) 1 NC_008309.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 1911674 mnmA 4241210 mnmA Haemophilus somnus 129PT tRNA-specific 2-thiouridylase MnmA YP_719888.1 1910523 R 205914 CDS YP_719889.1 113461820 4241211 complement(1911709..1912221) 1 NC_008309.1 hypothetical protein 1912221 4241211 HS_1684 Haemophilus somnus 129PT hypothetical protein YP_719889.1 1911709 R 205914 CDS YP_719890.1 113461821 4241212 complement(1912262..1912516) 1 NC_008309.1 hypothetical protein 1912516 4241212 HS_1685 Haemophilus somnus 129PT hypothetical protein YP_719890.1 1912262 R 205914 CDS YP_719891.1 113461822 4241213 complement(1912526..1913575) 1 NC_008309.1 thiamine biosynthesis lipoprotein 1913575 apbE 4241213 apbE Haemophilus somnus 129PT thiamine biosynthesis lipoprotein YP_719891.1 1912526 R 205914 CDS YP_719892.1 113461823 4241214 complement(1913591..1914103) 1 NC_008309.1 peptide methionine sulfoxide reductase msrA/msrB 1914103 msrAB 4241214 msrAB Haemophilus somnus 129PT peptide methionine sulfoxide reductase msrA/msrB YP_719892.1 1913591 R 205914 CDS YP_719893.1 113461824 4241215 complement(1914206..1915429) 1 NC_008309.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1915429 nqrF 4241215 nqrF Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit F YP_719893.1 1914206 R 205914 CDS YP_719894.1 113461825 4241216 complement(1915444..1916040) 1 NC_008309.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1916040 nqrE 4241216 nqrE Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit E YP_719894.1 1915444 R 205914 CDS YP_719895.1 113461826 4241217 complement(1916044..1916667) 1 NC_008309.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1916667 nqrD 4241217 nqrD Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit D YP_719895.1 1916044 R 205914 CDS YP_719896.1 113461827 4241218 complement(1916667..1917443) 1 NC_008309.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1917443 nqrC 4241218 nqrC Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit C YP_719896.1 1916667 R 205914 CDS YP_719897.1 113461828 4241219 complement(1917436..1918674) 1 NC_008309.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1918674 nqrB 4241219 nqrB Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit B YP_719897.1 1917436 R 205914 CDS YP_719898.1 113461829 4241220 complement(1918677..1920017) 1 NC_008309.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1920017 nqrA 4241220 nqrA Haemophilus somnus 129PT Na(+)-translocating NADH-quinone reductase subunit A YP_719898.1 1918677 R 205914 CDS YP_719899.1 113461830 4241221 complement(1920345..1920701) 1 NC_008309.1 transcriptional regulator BolA 1920701 bolA 4241221 bolA Haemophilus somnus 129PT transcriptional regulator BolA YP_719899.1 1920345 R 205914 CDS YP_719900.1 113461831 4241222 complement(1920846..1921274) 1 NC_008309.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1921274 atpC 4241222 atpC Haemophilus somnus 129PT F0F1 ATP synthase subunit epsilon YP_719900.1 1920846 R 205914 CDS YP_719901.1 113461832 4241223 complement(1921317..1922690) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1922690 atpD 4241223 atpD Haemophilus somnus 129PT F0F1 ATP synthase subunit beta YP_719901.1 1921317 R 205914 CDS YP_719902.1 113461833 4241224 complement(1922704..1923573) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1923573 atpG 4241224 atpG Haemophilus somnus 129PT F0F1 ATP synthase subunit gamma YP_719902.1 1922704 R 205914 CDS YP_719903.1 113461834 4241225 complement(1923597..1925138) 1 NC_008309.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1925138 atpA 4241225 atpA Haemophilus somnus 129PT F0F1 ATP synthase subunit alpha YP_719903.1 1923597 R 205914 CDS YP_719904.2 229131797 4241226 complement(1925151..1925699) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1925699 atpH 4241226 atpH Haemophilus somnus 129PT F0F1 ATP synthase subunit delta YP_719904.2 1925151 R 205914 CDS YP_719905.1 113461836 4241227 complement(1925713..1926183) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1926183 atpF 4241227 atpF Haemophilus somnus 129PT F0F1 ATP synthase subunit B YP_719905.1 1925713 R 205914 CDS YP_719906.1 113461837 4241228 complement(1926247..1926501) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1926501 atpE 4241228 atpE Haemophilus somnus 129PT F0F1 ATP synthase subunit C YP_719906.1 1926247 R 205914 CDS YP_719907.1 113461838 4241229 complement(1926600..1927397) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1927397 atpB 4241229 atpB Haemophilus somnus 129PT F0F1 ATP synthase subunit A YP_719907.1 1926600 R 205914 CDS YP_719908.1 113461839 4241230 complement(1927416..1927805) 1 NC_008309.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 1927805 4241230 HS_1703 Haemophilus somnus 129PT F0F1 ATP synthase subunit I YP_719908.1 1927416 R 205914 CDS YP_719909.1 113461840 4241231 complement(1927918..1928556) 1 NC_008309.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1928556 gidB 4241231 gidB Haemophilus somnus 129PT 16S rRNA methyltransferase GidB YP_719909.1 1927918 R 205914 CDS YP_719910.1 113461841 4241232 complement(1928580..1930469) 1 NC_008309.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 1930469 gidA 4241232 gidA Haemophilus somnus 129PT tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA YP_719910.1 1928580 R 205914 CDS YP_719911.1 113461842 4241233 complement(1930849..1931298) 1 NC_008309.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1931298 mioC 4241233 mioC Haemophilus somnus 129PT flavodoxin YP_719911.1 1930849 R 205914 CDS YP_719912.1 113461843 4241234 complement(1931364..1931582) 1 NC_008309.1 hypothetical protein 1931582 4241234 HS_1707 Haemophilus somnus 129PT hypothetical protein YP_719912.1 1931364 R 205914 CDS YP_719913.1 113461844 4241235 1931837..1934260 1 NC_008309.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 1934260 gyrB 4241235 gyrB Haemophilus somnus 129PT DNA gyrase subunit B YP_719913.1 1931837 D 205914 CDS YP_719914.1 113461845 4241236 1934310..1934963 1 NC_008309.1 transposase 1934963 4241236 HS_1709 Haemophilus somnus 129PT transposase YP_719914.1 1934310 D 205914 CDS YP_719915.1 113461846 4241237 1935023..1935265 1 NC_008309.1 hypothetical protein 1935265 4241237 HS_1710 Haemophilus somnus 129PT hypothetical protein YP_719915.1 1935023 D 205914 CDS YP_719916.1 113461847 4241238 complement(1935345..1937219) 1 NC_008309.1 ATP-dependent DNA helicase RecQ 1937219 recQ 4241238 recQ Haemophilus somnus 129PT ATP-dependent DNA helicase RecQ YP_719916.1 1935345 R 205914 CDS YP_719917.1 113461848 4241239 complement(1937219..1937527) 1 NC_008309.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 1937527 cyaY 4241239 cyaY Haemophilus somnus 129PT frataxin-like protein YP_719917.1 1937219 R 205914 CDS YP_719918.1 113461849 4241240 1937805..1939058 1 NC_008309.1 diaminopimelate decarboxylase 1939058 lysA 4241240 lysA Haemophilus somnus 129PT diaminopimelate decarboxylase YP_719918.1 1937805 D 205914 CDS YP_719919.1 113461850 4241241 1939322..1940830 1 NC_008309.1 SNF family sodium-dependent transporter 1940830 4241241 HS_1714 Haemophilus somnus 129PT SNF family sodium-dependent transporter YP_719919.1 1939322 D 205914 CDS YP_719920.1 113461851 4241242 complement(1941365..1942081) 1 NC_008309.1 DNA transformation protein 1942081 tfoX 4241242 tfoX Haemophilus somnus 129PT DNA transformation protein YP_719920.1 1941365 R 205914 CDS YP_719921.1 113461852 4241248 complement(1948118..1949056) 1 NC_008309.1 regulates the synthesis and expression of the dsdXA operon and dadA gene; DNA-binding transcriptional regulator DsdC 1949056 dsdC 4241248 dsdC Haemophilus somnus 129PT DNA-binding transcriptional regulator DsdC YP_719921.1 1948118 R 205914 CDS YP_719922.1 113461853 4241249 1949246..1950583 1 NC_008309.1 member of the Gnt family of gluconate transporters; not involved in gluconate transport; unknown function; permease DsdX 1950583 dsdX 4241249 dsdX Haemophilus somnus 129PT permease DsdX YP_719922.1 1949246 D 205914 CDS YP_719923.1 113461854 4241250 1950612..1951910 1 NC_008309.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 1951910 dsdA 4241250 dsdA Haemophilus somnus 129PT D-serine dehydratase YP_719923.1 1950612 D 205914 CDS YP_719924.1 113461855 4241253 1952412..1953263 1 NC_008309.1 chromosome partitioning-like protein 1953263 4241253 HS_1719 Haemophilus somnus 129PT chromosome partitioning-like protein YP_719924.1 1952412 D 205914 CDS YP_719925.1 113461856 4241254 1953256..1954632 1 NC_008309.1 replicative DNA helicase 1954632 dnaB 4241254 dnaB Haemophilus somnus 129PT replicative DNA helicase YP_719925.1 1953256 D 205914 CDS YP_719926.1 113461857 4241255 1954622..1956328 1 NC_008309.1 hypothetical protein 1956328 4241255 HS_1721 Haemophilus somnus 129PT hypothetical protein YP_719926.1 1954622 D 205914 CDS YP_719927.1 113461858 4241256 1956339..1956890 1 NC_008309.1 hypothetical protein 1956890 4241256 HS_1722 Haemophilus somnus 129PT hypothetical protein YP_719927.1 1956339 D 205914 CDS YP_719928.1 113461859 4241257 1957053..1958282 1 NC_008309.1 hypothetical protein 1958282 4241257 HS_1723 Haemophilus somnus 129PT hypothetical protein YP_719928.1 1957053 D 205914 CDS YP_719929.1 113461860 4241258 1958896..1959648 1 NC_008309.1 hypothetical protein 1959648 4241258 HS_1724 Haemophilus somnus 129PT hypothetical protein YP_719929.1 1958896 D 205914 CDS YP_719930.1 113461861 4241259 1959689..1960201 1 NC_008309.1 hypothetical protein 1960201 4241259 HS_1725 Haemophilus somnus 129PT hypothetical protein YP_719930.1 1959689 D 205914 CDS YP_719931.1 113461862 4241260 1960349..1961146 1 NC_008309.1 hypothetical protein 1961146 4241260 HS_1726 Haemophilus somnus 129PT hypothetical protein YP_719931.1 1960349 D 205914 CDS YP_719932.1 113461863 4241261 1961150..1961359 1 NC_008309.1 hypothetical protein 1961359 4241261 HS_1727 Haemophilus somnus 129PT hypothetical protein YP_719932.1 1961150 D 205914 CDS YP_719933.1 113461864 4241262 complement(1961363..1961557) 1 NC_008309.1 hypothetical protein 1961557 4241262 HS_1728 Haemophilus somnus 129PT hypothetical protein YP_719933.1 1961363 R 205914 CDS YP_719934.1 113461865 4241263 1961745..1962194 1 NC_008309.1 single-stranded DNA binding protein 1962194 ssb 4241263 ssb Haemophilus somnus 129PT single-stranded DNA binding protein YP_719934.1 1961745 D 205914 CDS YP_719935.1 113461866 4241264 1962274..1962732 1 NC_008309.1 hypothetical protein 1962732 4241264 HS_1730 Haemophilus somnus 129PT hypothetical protein YP_719935.1 1962274 D 205914 CDS YP_719936.1 113461867 4241265 complement(1962695..1963465) 1 NC_008309.1 hypothetical protein 1963465 4241265 HS_1731 Haemophilus somnus 129PT hypothetical protein YP_719936.1 1962695 R 205914 CDS YP_719937.1 113461868 4241266 1963578..1964057 1 NC_008309.1 hypothetical protein 1964057 4241266 HS_1732 Haemophilus somnus 129PT hypothetical protein YP_719937.1 1963578 D 205914 CDS YP_719938.1 113461869 4241267 1964537..1965055 1 NC_008309.1 hypothetical protein 1965055 4241267 HS_1733 Haemophilus somnus 129PT hypothetical protein YP_719938.1 1964537 D 205914 CDS YP_719939.1 113461870 4241268 complement(1965052..1965303) 1 NC_008309.1 hypothetical protein 1965303 4241268 HS_1734 Haemophilus somnus 129PT hypothetical protein YP_719939.1 1965052 R 205914 CDS YP_719940.1 113461871 4241269 complement(1965589..1966311) 1 NC_008309.1 hypothetical protein 1966311 4241269 HS_1735 Haemophilus somnus 129PT hypothetical protein YP_719940.1 1965589 R 205914 CDS YP_719941.1 113461872 4241270 1966253..1966693 1 NC_008309.1 hypothetical protein 1966693 4241270 HS_1736 Haemophilus somnus 129PT hypothetical protein YP_719941.1 1966253 D 205914 CDS YP_719942.1 113461873 4241271 1966695..1968725 1 NC_008309.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1968725 topA 4241271 topA Haemophilus somnus 129PT DNA topoisomerase III YP_719942.1 1966695 D 205914 CDS YP_719943.1 113461874 4241272 1969488..1969952 1 NC_008309.1 hypothetical protein 1969952 4241272 HS_1738 Haemophilus somnus 129PT hypothetical protein YP_719943.1 1969488 D 205914 CDS YP_719944.1 113461875 4241273 1970033..1970431 1 NC_008309.1 hypothetical protein 1970431 4241273 HS_1739 Haemophilus somnus 129PT hypothetical protein YP_719944.1 1970033 D 205914 CDS YP_719945.1 113461876 4241274 1970520..1970813 1 NC_008309.1 hypothetical protein 1970813 4241274 HS_1740 Haemophilus somnus 129PT hypothetical protein YP_719945.1 1970520 D 205914 CDS YP_719946.1 113461877 4241275 1971203..1971508 1 NC_008309.1 hypothetical protein 1971508 4241275 HS_1741 Haemophilus somnus 129PT hypothetical protein YP_719946.1 1971203 D 205914 CDS YP_719947.1 113461878 4241276 1971652..1972299 1 NC_008309.1 hypothetical protein 1972299 4241276 HS_1742 Haemophilus somnus 129PT hypothetical protein YP_719947.1 1971652 D 205914 CDS YP_719948.1 113461879 4241277 1972320..1972517 1 NC_008309.1 hypothetical protein 1972517 4241277 HS_1743 Haemophilus somnus 129PT hypothetical protein YP_719948.1 1972320 D 205914 CDS YP_719949.1 113461880 4241278 1972670..1973002 1 NC_008309.1 hypothetical protein 1973002 4241278 HS_1744 Haemophilus somnus 129PT hypothetical protein YP_719949.1 1972670 D 205914 CDS YP_719950.1 113461881 4241279 1973220..1973666 1 NC_008309.1 hypothetical protein 1973666 4241279 HS_1745 Haemophilus somnus 129PT hypothetical protein YP_719950.1 1973220 D 205914 CDS YP_719951.1 113461882 4241280 1973782..1974429 1 NC_008309.1 hypothetical protein 1974429 4241280 HS_1746 Haemophilus somnus 129PT hypothetical protein YP_719951.1 1973782 D 205914 CDS YP_719952.1 113461883 4241281 1974317..1975168 1 NC_008309.1 hypothetical protein 1975168 4241281 HS_1747 Haemophilus somnus 129PT hypothetical protein YP_719952.1 1974317 D 205914 CDS YP_719953.1 113461884 4241282 1975087..1975857 1 NC_008309.1 hypothetical protein 1975857 4241282 HS_1748 Haemophilus somnus 129PT hypothetical protein YP_719953.1 1975087 D 205914 CDS YP_719954.1 113461885 4241283 1975888..1976151 1 NC_008309.1 hypothetical protein 1976151 4241283 HS_1749 Haemophilus somnus 129PT hypothetical protein YP_719954.1 1975888 D 205914 CDS YP_719955.1 113461886 4241284 1976152..1976664 1 NC_008309.1 hypothetical protein 1976664 4241284 HS_1750 Haemophilus somnus 129PT hypothetical protein YP_719955.1 1976152 D 205914 CDS YP_719956.1 113461887 4241285 1976664..1978895 1 NC_008309.1 hypothetical protein 1978895 4241285 HS_1751 Haemophilus somnus 129PT hypothetical protein YP_719956.1 1976664 D 205914 CDS YP_719957.1 113461888 4241286 1978892..1979230 1 NC_008309.1 hypothetical protein 1979230 4241286 HS_1752 Haemophilus somnus 129PT hypothetical protein YP_719957.1 1978892 D 205914 CDS YP_719958.1 113461889 4241287 1979230..1979919 1 NC_008309.1 hypothetical protein 1979919 4241287 HS_1753 Haemophilus somnus 129PT hypothetical protein YP_719958.1 1979230 D 205914 CDS YP_719959.1 113461890 4241288 1980104..1980292 1 NC_008309.1 hypothetical protein 1980292 4241288 HS_1754 Haemophilus somnus 129PT hypothetical protein YP_719959.1 1980104 D 205914 CDS YP_719960.1 113461891 4241289 1980289..1980570 1 NC_008309.1 hypothetical protein 1980570 4241289 HS_1755 Haemophilus somnus 129PT hypothetical protein YP_719960.1 1980289 D 205914 CDS YP_719961.1 113461892 4241290 1981051..1981374 1 NC_008309.1 hypothetical protein 1981374 4241290 HS_1756 Haemophilus somnus 129PT hypothetical protein YP_719961.1 1981051 D 205914 CDS YP_719962.1 113461893 4241291 1981385..1981627 1 NC_008309.1 hypothetical protein 1981627 4241291 HS_1757 Haemophilus somnus 129PT hypothetical protein YP_719962.1 1981385 D 205914 CDS YP_719963.1 113461894 4241292 1981636..1982046 1 NC_008309.1 hypothetical protein 1982046 4241292 HS_1758 Haemophilus somnus 129PT hypothetical protein YP_719963.1 1981636 D 205914 CDS YP_719964.1 113461895 4241293 1982089..1982457 1 NC_008309.1 hypothetical protein 1982457 4241293 HS_1759 Haemophilus somnus 129PT hypothetical protein YP_719964.1 1982089 D 205914 CDS YP_719965.1 113461896 4241294 1982458..1983096 1 NC_008309.1 hypothetical protein 1983096 4241294 HS_1760 Haemophilus somnus 129PT hypothetical protein YP_719965.1 1982458 D 205914 CDS YP_719966.1 113461897 4241295 1983097..1984017 1 NC_008309.1 hypothetical protein 1984017 4241295 HS_1761 Haemophilus somnus 129PT hypothetical protein YP_719966.1 1983097 D 205914 CDS YP_719967.1 113461898 4241296 1984004..1985425 1 NC_008309.1 hypothetical protein 1985425 4241296 HS_1762 Haemophilus somnus 129PT hypothetical protein YP_719967.1 1984004 D 205914 CDS YP_719968.1 113461899 4241297 1985437..1985841 1 NC_008309.1 hypothetical protein 1985841 4241297 HS_1763 Haemophilus somnus 129PT hypothetical protein YP_719968.1 1985437 D 205914 CDS YP_719969.1 113461900 4241298 1985841..1988657 1 NC_008309.1 hypothetical protein 1988657 4241298 HS_1764 Haemophilus somnus 129PT hypothetical protein YP_719969.1 1985841 D 205914 CDS YP_719970.1 113461901 4241299 1988644..1989033 1 NC_008309.1 hypothetical protein 1989033 4241299 HS_1765 Haemophilus somnus 129PT hypothetical protein YP_719970.1 1988644 D 205914 CDS YP_719971.1 113461902 4241300 1989033..1989332 1 NC_008309.1 hypothetical protein 1989332 4241300 HS_1766 Haemophilus somnus 129PT hypothetical protein YP_719971.1 1989033 D 205914 CDS YP_719972.1 113461903 4241301 1989343..1990845 1 NC_008309.1 hypothetical protein 1990845 4241301 HS_1767 Haemophilus somnus 129PT hypothetical protein YP_719972.1 1989343 D 205914 CDS YP_719973.1 113461904 4241302 complement(1990896..1991228) 1 NC_008309.1 hypothetical protein 1991228 4241302 HS_1768 Haemophilus somnus 129PT hypothetical protein YP_719973.1 1990896 R 205914 CDS YP_719974.1 113461905 4241303 complement(1991256..1991651) 1 NC_008309.1 hypothetical protein 1991651 4241303 HS_1769 Haemophilus somnus 129PT hypothetical protein YP_719974.1 1991256 R 205914 CDS YP_719975.1 113461906 4241304 complement(1991657..1991989) 1 NC_008309.1 hypothetical protein 1991989 4241304 HS_1770 Haemophilus somnus 129PT hypothetical protein YP_719975.1 1991657 R 205914 CDS YP_719976.1 113461907 4241305 complement(1992060..1992461) 1 NC_008309.1 hypothetical protein 1992461 4241305 HS_1771 Haemophilus somnus 129PT hypothetical protein YP_719976.1 1992060 R 205914 CDS YP_719977.1 113461908 4241306 complement(1992461..1992700) 1 NC_008309.1 hypothetical protein 1992700 4241306 HS_1772 Haemophilus somnus 129PT hypothetical protein YP_719977.1 1992461 R 205914 CDS YP_719978.1 113461909 4241307 complement(1992821..1993258) 1 NC_008309.1 hypothetical protein 1993258 4241307 HS_1773 Haemophilus somnus 129PT hypothetical protein YP_719978.1 1992821 R 205914 CDS YP_719979.1 113461910 4241308 complement(1993321..1995321) 1 NC_008309.1 hypothetical protein 1995321 4241308 HS_1774 Haemophilus somnus 129PT hypothetical protein YP_719979.1 1993321 R 205914 CDS YP_719980.1 113461911 4241309 complement(1995333..1996259) 1 NC_008309.1 hypothetical protein 1996259 4241309 HS_1775 Haemophilus somnus 129PT hypothetical protein YP_719980.1 1995333 R 205914 CDS YP_719981.1 113461912 4241310 complement(1996261..1996698) 1 NC_008309.1 hypothetical protein 1996698 4241310 HS_1776 Haemophilus somnus 129PT hypothetical protein YP_719981.1 1996261 R 205914 CDS YP_719982.1 113461913 4241311 1996990..1997430 1 NC_008309.1 hypothetical protein 1997430 4241311 HS_1777 Haemophilus somnus 129PT hypothetical protein YP_719982.1 1996990 D 205914 CDS YP_719983.1 113461914 4241312 1997526..1997783 1 NC_008309.1 hypothetical protein 1997783 4241312 HS_1778 Haemophilus somnus 129PT hypothetical protein YP_719983.1 1997526 D 205914 CDS YP_719984.1 113461915 4241313 1997780..1998025 1 NC_008309.1 hypothetical protein 1998025 4241313 HS_1779 Haemophilus somnus 129PT hypothetical protein YP_719984.1 1997780 D 205914 CDS YP_719985.1 113461916 4241314 1998290..1999258 1 NC_008309.1 antirestriction protein 1999258 4241314 HS_1780 Haemophilus somnus 129PT antirestriction protein YP_719985.1 1998290 D 205914 CDS YP_719986.1 113461917 4241315 1999490..1999903 1 NC_008309.1 hypothetical protein 1999903 4241315 HS_1781 Haemophilus somnus 129PT hypothetical protein YP_719986.1 1999490 D 205914 CDS YP_719987.1 113461918 4241316 2000019..2000252 1 NC_008309.1 hypothetical protein 2000252 4241316 HS_1782 Haemophilus somnus 129PT hypothetical protein YP_719987.1 2000019 D 205914 CDS YP_719988.1 113461919 4241317 complement(2000602..2001069) 1 NC_008309.1 hypothetical protein 2001069 4241317 HS_1783 Haemophilus somnus 129PT hypothetical protein YP_719988.1 2000602 R 205914 CDS YP_719989.1 113461920 4241318 complement(2001071..2001334) 1 NC_008309.1 hypothetical protein 2001334 4241318 HS_1784 Haemophilus somnus 129PT hypothetical protein YP_719989.1 2001071 R 205914 CDS YP_719990.1 113461921 4241319 complement(2001472..2001708) 1 NC_008309.1 hypothetical protein 2001708 4241319 HS_1785 Haemophilus somnus 129PT hypothetical protein YP_719990.1 2001472 R 205914 CDS YP_719991.1 113461922 4241320 complement(2001784..2002053) 1 NC_008309.1 hypothetical protein 2002053 4241320 HS_1786 Haemophilus somnus 129PT hypothetical protein YP_719991.1 2001784 R 205914 CDS YP_719992.1 113461923 4241321 2002226..2003155 1 NC_008309.1 hypothetical protein 2003155 4241321 HS_1787 Haemophilus somnus 129PT hypothetical protein YP_719992.1 2002226 D 205914 CDS YP_719993.1 113461924 4241322 complement(2003166..2003639) 1 NC_008309.1 hypothetical protein 2003639 4241322 HS_1788 Haemophilus somnus 129PT hypothetical protein YP_719993.1 2003166 R 205914 CDS YP_719994.1 113461925 4241323 2003858..2004094 1 NC_008309.1 hypothetical protein 2004094 4241323 HS_1789 Haemophilus somnus 129PT hypothetical protein YP_719994.1 2003858 D 205914 CDS YP_719995.1 113461926 4241324 complement(2004189..2004617) 1 NC_008309.1 hypothetical protein 2004617 4241324 HS_1790 Haemophilus somnus 129PT hypothetical protein YP_719995.1 2004189 R 205914 CDS YP_719996.1 113461927 4241325 complement(2004619..2005728) 1 NC_008309.1 hypothetical protein 2005728 4241325 HS_1791 Haemophilus somnus 129PT hypothetical protein YP_719996.1 2004619 R 205914 CDS