-- dump date   	20140619_100359
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_005376194.1	PFAM: domain; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA
YP_005376195.1	PFAM: DNA polymerase III beta subunit, C-terminal domain; DNA polymerase III beta subunit, N-terminal domain; DNA polymerase III beta subunit, central domain; TIGRFAM: DNA polymerase III, beta subunit
YP_005376196.1	PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: recF protein
YP_005376197.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit
YP_005376200.1	PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_005376201.1	PFAM: MotA/TolQ/ExbB proton channel family
YP_005376202.1	PFAM: Biopolymer transport protein ExbD/TolR
YP_005376203.1	PFAM: Biopolymer transport protein ExbD/TolR
YP_005376204.1	PFAM: 4'-phosphopantetheinyl transferase superfamily; TIGRFAM: phosphopantetheine--protein transferase domain
YP_005376205.1	PFAM: Domain of unknown function (DUF336)
YP_005376206.1	PFAM: Radical SAM superfamily
YP_005376209.1	PFAM: ABC transporter
YP_005376210.1	PFAM: Bacterial regulatory proteins, gntR family
YP_005376211.1	PFAM: Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat
YP_005376212.1	PFAM: Glycosyl hydrolases family 15
YP_005376213.1	PFAM: Glucose-6-phosphate dehydrogenase, C-terminal domain; Glucose-6-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase
YP_005376215.1	PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain
YP_005376216.1	PFAM: Major Facilitator Superfamily; TIGRFAM: L-fucose:H+ symporter permease
YP_005376217.1	PFAM: Fructose-1-6-bisphosphatase
YP_005376218.1	PFAM: Bacterial protein of unknown function (DUF885)
YP_005376219.1	PFAM: OmpW family
YP_005376220.1	PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases
YP_005376223.1	PFAM: Protein of unknown function (DUF1328)
YP_005376225.1	PFAM: Bacterial protein of unknown function (DUF883)
YP_005376228.1	PFAM: Domain of unknown function DUF20
YP_005376229.1	PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP
YP_005376230.1	PFAM: Uncharacterised protein family (UPF0075)
YP_005376231.1	PFAM: Opacity-associated protein A LysM-like domain; Peptidase family M23
YP_005376232.1	PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tyrosyl-tRNA synthetase
YP_005376235.1	PFAM: Phosphoribosyl transferase domain; TIGRFAM: orotate phosphoribosyltransferase
YP_005376236.1	PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_005376237.1	PFAM: Major Facilitator Superfamily
YP_005376238.1	PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme
YP_005376240.1	PFAM: GMC oxidoreductase
YP_005376241.1	PFAM: Cytochrome c
YP_005376242.1	PFAM: EamA-like transporter family
YP_005376243.1	PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial
YP_005376244.1	PFAM: Major Facilitator Superfamily
YP_005376245.1	PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase
YP_005376246.1	PFAM: Dehydratase family; TIGRFAM: 6-phosphogluconate dehydratase
YP_005376247.1	PFAM: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; TIGRFAM: 6-phosphogluconolactonase
YP_005376248.1	PFAM: Glucose-6-phosphate dehydrogenase, NAD binding domain; Glucose-6-phosphate dehydrogenase, C-terminal domain; TIGRFAM: glucose-6-phosphate 1-dehydrogenase
YP_005376249.1	PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_005376251.1	PFAM: Major royal jelly protein
YP_005376252.1	PFAM: Amidohydrolase family
YP_005376254.1	PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
YP_005376255.1	PFAM: Aldose 1-epimerase
YP_005376257.1	PFAM: Phosphopantetheine attachment site
YP_005376258.1	PFAM: FabA-like domain
YP_005376259.1	PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_005376263.1	PFAM: Glycosyl transferase family 2
YP_005376265.1	PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain
YP_005376266.1	PFAM: Coproporphyrinogen III oxidase
YP_005376267.1	PFAM: Protein of unknown function, DUF583
YP_005376270.1	PFAM: short chain dehydrogenase
YP_005376271.1	PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphoglycerate mutase, BPG-dependent, family 1
YP_005376273.1	PFAM: Protein of unknown function (DUF526)
YP_005376274.1	PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein
YP_005376275.1	PFAM: alpha/beta hydrolase fold
YP_005376276.1	PFAM: Sodium/hydrogen exchanger family
YP_005376277.1	PFAM: Isocitrate lyase family; TIGRFAM: isocitrate lyase
YP_005376278.1	PFAM: Malate synthase; TIGRFAM: malate synthase A
YP_005376279.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005376281.1	PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent, prokaryotic type
YP_005376282.1	PFAM: Isocitrate dehydrogenase kinase/phosphatase (AceK)
YP_005376283.1	PFAM: TraB family
YP_005376284.1	PFAM: Aldo/keto reductase family
YP_005376285.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005376286.1	PFAM: Protein of unknown function DUF88
YP_005376287.1	PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase
YP_005376288.1	PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_005376289.1	PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: general secretory pathway protein E
YP_005376290.1	PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F
YP_005376291.1	PFAM: Prokaryotic N-terminal methylation motif; Bacterial type II secretion system protein G; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain
YP_005376293.1	PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_005376294.1	TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_005376295.1	PFAM: General secretion pathway protein K
YP_005376297.1	PFAM: General secretion pathway protein M
YP_005376299.1	PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: general secretion pathway protein D
YP_005376301.1	PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); ATP-dependent helicase C-terminal; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB
YP_005376302.1	PFAM: Benzoate membrane transport protein; TIGRFAM: benzoate transporter
YP_005376303.1	PFAM: BlaR1 peptidase M56
YP_005376304.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_005376305.1	PFAM: Universal stress protein family
YP_005376309.1	PFAM: Helicase conserved C-terminal domain; Domain of unknown function (DUF1998); DEAD/DEAH box helicase
YP_005376310.1	PFAM: Bacterial DNA-binding protein
YP_005376311.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2058)
YP_005376312.1	PFAM: Aldo/keto reductase family
YP_005376313.1	PFAM: Ribonucleotide reductase, small chain
YP_005376314.1	PFAM: Ribonucleotide reductase, all-alpha domain; ATP cone domain; Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit
YP_005376315.1	PFAM: AMP-binding enzyme
YP_005376317.1	PFAM: Protein of unknown function (DUF692)
YP_005376318.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2063)
YP_005376319.1	PFAM: ZIP Zinc transporter
YP_005376320.1	PFAM: Peptidase family M23
YP_005376321.1	PFAM: CDP-diacylglycerol pyrophosphatase; TIGRFAM: CDP-diacylglycerol pyrophosphatase, bacterial type
YP_005376322.1	PFAM: Phospholipase D/viral envelope; Phospholipase D Active site motif
YP_005376323.1	PFAM: Peptidase S46
YP_005376324.1	PFAM: AFG1-like ATPase
YP_005376326.1	PFAM: Protein of unknown function, DUF479
YP_005376327.1	TIGRFAM: RND family efflux transporter, MFP subunit
YP_005376328.1	PFAM: AcrB/AcrD/AcrF family
YP_005376329.1	PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_005376330.1	PFAM: Helix-turn-helix
YP_005376331.1	PFAM: TonB-dependent Receptor Plug Domain; manually curated
YP_005376333.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_005376336.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005376337.1	PFAM: TonB-dependent Receptor Plug Domain
YP_005376338.1	PFAM: Glycyl-tRNA synthetase beta subunit; DALR anticodon binding domain; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit
YP_005376339.1	PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit
YP_005376340.1	PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain
YP_005376341.1	PFAM: GDSL-like Lipase/Acylhydrolase; Autotransporter beta-domain
YP_005376342.1	PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain
YP_005376343.1	PFAM: RDD family
YP_005376344.1	PFAM: Glucose inhibited division protein A; TIGRFAM: glucose-inhibited division protein A
YP_005376345.1	PFAM: Domain of unknown function (DUF3458); Peptidase family M1; TIGRFAM: aminopeptidase N, Escherichia coli type
YP_005376346.1	PFAM: Aldose 1-epimerase
YP_005376347.1	PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I
YP_005376348.1	PFAM: Macro domain
YP_005376349.1	PFAM: Aldehyde dehydrogenase family
YP_005376350.1	PFAM: Methyltransferase domain; TIGRFAM: biotin biosynthesis protein BioC
YP_005376351.1	TIGRFAM: putative pimeloyl-BioC--CoA transferase BioH
YP_005376352.1	PFAM: Rhodanese-like domain
YP_005376353.1	PFAM: C-terminal regulatory domain of Threonine dehydratase; Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine ammonia-lyase, biosynthetic, long form
YP_005376354.1	PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_005376355.1	PFAM: Radical SAM superfamily; Biotin and Thiamin Synthesis associated domain; TIGRFAM: biotin synthase
YP_005376357.1	PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein
YP_005376358.1	PFAM: Protein of unknown function (DUF2968)
YP_005376359.1	PFAM: Predicted membrane protein (DUF2134)
YP_005376360.1	PFAM: Protein of unknown function (DUF3613)
YP_005376362.1	PFAM: Bacterial type II secretion system protein F domain
YP_005376363.1	PFAM: Bacterial type II secretion system protein F domain
YP_005376364.1	PFAM: Type II/IV secretion system protein
YP_005376366.1	PFAM: Bacterial type II and III secretion system protein
YP_005376367.1	TIGRFAM: Flp pilus assembly protein CpaB
YP_005376369.1	PFAM: Type IV leader peptidase family
YP_005376370.1	PFAM: Flp/Fap pilin component
YP_005376372.1	PFAM: UbiA prenyltransferase family; TIGRFAM: 4-hydroxybenzoate polyprenyl transferase, proteobacterial
YP_005376373.1	PFAM: 6-pyruvoyl tetrahydropterin synthase; TIGRFAM: queuosine biosynthesis protein QueD; 6-pyruvoyl tetrahydropterin synthase/QueD family protein
YP_005376375.1	PFAM: ATP synthase A chain; TIGRFAM: ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes)
YP_005376376.1	PFAM: ATP synthase subunit C; TIGRFAM: ATP synthase, F0 subunit c
YP_005376377.1	PFAM: ATP synthase B/B' CF(0); TIGRFAM: ATP synthase, F0 subunit b
YP_005376378.1	PFAM: ATP synthase delta (OSCP) subunit; TIGRFAM: ATP synthase, F1 delta subunit
YP_005376379.1	PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: proton translocating ATP synthase, F1 alpha subunit
YP_005376380.1	PFAM: ATP synthase; TIGRFAM: ATP synthase, F1 gamma subunit
YP_005376381.1	PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit
YP_005376382.1	PFAM: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; ATP synthase, Delta/Epsilon chain, long alpha-helix domain; TIGRFAM: ATP synthase, F1 epsilon subunit (delta in mitochondria)
YP_005376383.1	PFAM: PhoPQ-activated pathogenicity-related protein
YP_005376384.1	PFAM: MarR family; TIGRFAM: homoprotocatechuate degradation operon regulator, HpaR
YP_005376385.1	PFAM: Pirin
YP_005376386.1	PFAM: Protein of unknown function (DUF3224)
YP_005376387.1	PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_005376389.1	PFAM: Carbohydrate-selective porin, OprB family
YP_005376390.1	PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_005376391.1	PFAM: Membrane bound FAD containing D-sorbitol dehydrogenase
YP_005376392.1	PFAM: GMC oxidoreductase; FAD dependent oxidoreductase
YP_005376393.1	PFAM: Cytochrome c
YP_005376395.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain
YP_005376397.1	PFAM: Protein of unknown function, DUF488
YP_005376399.1	PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain
YP_005376400.1	PFAM: Luciferase-like monooxygenase; TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family
YP_005376401.1	PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle
YP_005376402.1	PFAM: Binding-protein-dependent transport system inner membrane component
YP_005376403.1	PFAM: Binding-protein-dependent transport system inner membrane component
YP_005376404.1	PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region
YP_005376405.1	PFAM: Sigma-54 interaction domain
YP_005376406.1	PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_005376407.1	PFAM: Luciferase-like monooxygenase; TIGRFAM: alkanesulfonate monooxygenase, FMNH(2)-dependent
YP_005376408.1	PFAM: NADPH-dependent FMN reductase; TIGRFAM: FMN reductase, MsuE subfamily
YP_005376412.1	PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase
YP_005376413.1	PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain
YP_005376414.1	PFAM: Cytochrome c
YP_005376415.1	PFAM: Protein of unknown function (DUF1269)
YP_005376416.1	PFAM: Resolvase, N terminal domain; Helix-turn-helix domain of resolvase
YP_005376418.1	PFAM: Phage integrase family
YP_005376420.1	PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 factor, region 1.1; Sigma-70, non-essential region; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoD, C-terminal domain
YP_005376421.1	PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase
YP_005376422.1	PFAM: Bacterial lipid A biosynthesis acyltransferase
YP_005376425.1	PFAM: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
YP_005376426.1	PFAM: Glycosyl transferase family 2
YP_005376427.1	PFAM: O-Antigen ligase
YP_005376428.1	PFAM: Glycosyl transferase family 2
YP_005376429.1	PFAM: Glycosyl transferase family 2
YP_005376430.1	PFAM: EAL domain
YP_005376431.1	PFAM: Protein kinase domain; Transcriptional regulatory protein, C terminal
YP_005376435.1	PFAM: short chain dehydrogenase
YP_005376436.1	PFAM: Bacterial Fe(2+) trafficking
YP_005376437.1	PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: A/G-specific adenine glycosylase
YP_005376438.1	PFAM: AsmA family
YP_005376439.1	PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; TIGRFAM: signal recognition particle-docking protein FtsY
YP_005376440.1	PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family
YP_005376441.1	PFAM: Cytidylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase, bacterial; cytidyltransferase-related domain
YP_005376445.1	PFAM: Glycosyl hydrolases family 28
YP_005376446.1	PFAM: NUDIX domain
YP_005376447.1	PFAM: 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain
YP_005376448.1	PFAM: Nitroreductase family
YP_005376449.1	PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: cytidine deaminase, homotetrameric
YP_005376450.1	PFAM: Protein of unknown function (DUF3106)
YP_005376452.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_005376454.1	PFAM: Domain of unknown function DUF59; TIGRFAM: probable FeS assembly SUF system protein SufT
YP_005376457.1	PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_005376458.1	PFAM: S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form
YP_005376459.1	TIGRFAM: coenzyme PQQ biosynthesis protein B
YP_005376460.1	PFAM: TENA/THI-4/PQQC family; TIGRFAM: coenzyme PQQ biosynthesis protein C
YP_005376461.1	PFAM: Coenzyme PQQ synthesis protein D (PqqD); TIGRFAM: coenzyme PQQ biosynthesis protein PqqD
YP_005376462.1	PFAM: Radical SAM superfamily; TIGRFAM: coenzyme PQQ biosynthesis enzyme PqqE; radical SAM additional 4Fe4S-binding domain
YP_005376463.1	PFAM: Ubiquinone biosynthesis protein COQ7
YP_005376464.1	PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type
YP_005376465.1	PFAM: Ribosomal protein S9/S16
YP_005376467.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005376469.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005376470.1	PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
YP_005376473.1	PFAM: NAD dependent epimerase/dehydratase family
YP_005376474.1	PFAM: S4 domain; TIGRFAM: pseudouridine synthase
YP_005376475.1	PFAM: RIO1 family
YP_005376477.1	manually curated
YP_005376478.1	PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_005376479.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005376480.1	PFAM: AcrB/AcrD/AcrF family
YP_005376481.1	PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_005376482.1	PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_005376483.1	PFAM: Dyp-type peroxidase family; TIGRFAM: Dyp-type peroxidase family
YP_005376484.1	PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_005376485.1	PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_005376486.1	PFAM: SAF domain; D-galactarate dehydratase / Altronate hydrolase, C terminus
YP_005376487.1	PFAM: 2-keto-3-deoxygluconate permease; TIGRFAM: 2-keto-3-deoxygluconate transporter; manually curated
YP_005376488.1	PFAM: Amino acid permease
YP_005376489.1	PFAM: Flavin reductase like domain
YP_005376490.1	PFAM: Protein of unknown function (DUF445)
YP_005376491.1	PFAM: Mechanosensitive ion channel
YP_005376492.1	PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase
YP_005376494.1	PFAM: RimK-like ATP-grasp domain
YP_005376495.1	PFAM: Acetyltransferase (GNAT) family
YP_005376496.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005376499.1	PFAM: Diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase
YP_005376500.1	PFAM: Protein of unknown function, DUF484
YP_005376501.1	PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; TIGRFAM: tyrosine recombinase XerC
YP_005376502.1	PFAM: Proteasome subunit; TIGRFAM: ATP-dependent protease HslVU, peptidase subunit
YP_005376503.1	PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent protease HslVU, ATPase subunit
YP_005376505.1	PFAM: Major Facilitator Superfamily
YP_005376506.1	PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family
YP_005376507.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005376508.1	PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005376509.1	PFAM: Phosphopantetheine attachment site; Thioesterase domain; Condensation domain; AMP-binding enzyme; TIGRFAM: amino acid adenylation domain
YP_005376510.1	PFAM: Glycosyltransferase family 28 N-terminal domain; UDP-glucoronosyl and UDP-glucosyl transferase
YP_005376511.1	PFAM: Penicillin amidase
YP_005376512.1	PFAM: Glycosyl transferase family 2
YP_005376513.1	PFAM: Methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase, prokaryotic form
YP_005376514.1	PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_005376515.1	PFAM: YeeE/YedE family (DUF395)
YP_005376516.1	PFAM: YeeE/YedE family (DUF395)
YP_005376517.1	PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; S-adenosyl-L-homocysteine hydrolase; TIGRFAM: adenosylhomocysteinase
YP_005376518.1	PFAM: Phosphoenolpyruvate carboxylase
YP_005376519.1	PFAM: Isochorismatase family
YP_005376520.1	PFAM: Glycosyl hydrolases family 32 N-terminal domain
YP_005376521.1	PFAM: Aldo/keto reductase family
YP_005376522.1	PFAM: ABC transporter
YP_005376523.1	PFAM: D-alanyl-D-alanine carboxypeptidase
YP_005376524.1	PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: D-xylulose kinase
YP_005376525.1	PFAM: Uncharacterized BCR, YitT family COG1284
YP_005376526.1	PFAM: S-adenosylmethionine synthetase, C-terminal domain; S-adenosylmethionine synthetase, N-terminal domain; S-adenosylmethionine synthetase, central domain; TIGRFAM: S-adenosylmethionine synthetase
YP_005376527.1	PFAM: Cobalamin-independent synthase, N-terminal domain; Cobalamin-independent synthase, Catalytic domain; TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase
YP_005376528.1	PFAM: Dihydrouridine synthase (Dus); TIGRFAM: putative TIM-barrel protein, nifR3 family
YP_005376529.1	PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family
YP_005376530.1	PFAM: Na+ dependent nucleoside transporter C-terminus; Na+ dependent nucleoside transporter N-terminus; Nucleoside recognition; TIGRFAM: nucleoside transporter
YP_005376531.1	PFAM: LysE type translocator; TIGRFAM: The Resistance to Homoserine/Threonine (RhtB) Family protein
YP_005376532.1	PFAM: Uncharacterised protein family UPF0102; TIGRFAM: TIGR00252 family protein
YP_005376533.1	PFAM: LppC putative lipoprotein
YP_005376534.1	PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: probable S-adenosylmethionine-dependent methyltransferase, YraL family
YP_005376535.1	PFAM: MraZ protein; TIGRFAM: mraZ protein
YP_005376536.1	PFAM: MraW methylase family; TIGRFAM: S-adenosyl-methyltransferase MraW
YP_005376537.1	PFAM: Cell division protein FtsL; TIGRFAM: cell division protein FtsL
YP_005376538.1	PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain
YP_005376539.1	PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase
YP_005376540.1	PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
YP_005376541.1	PFAM: Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1; Glycosyl transferase family 4; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase
YP_005376542.1	PFAM: Cell cycle protein; TIGRFAM: cell division protein FtsW
YP_005376543.1	PFAM: Glycosyltransferase family 28 C-terminal domain; Glycosyltransferase family 28 N-terminal domain; TIGRFAM: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
YP_005376544.1	PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate--alanine ligase
YP_005376545.1	PFAM: D-ala D-ala ligase N-terminus; D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_005376546.1	PFAM: Cell division protein FtsQ; POTRA domain, FtsQ-type
YP_005376547.1	PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA
YP_005376548.1	PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ
YP_005376549.1	PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_005376550.1	PFAM: Protein of unknown function (DUF721)
YP_005376551.1	PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit
YP_005376552.1	PFAM: Calcineurin-like phosphoesterase; TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
YP_005376553.1	PFAM: Protein of unknown function (DUF525)
YP_005376554.1	PFAM: Ribosomal RNA adenine dimethylase; TIGRFAM: dimethyladenosine transferase
YP_005376555.1	PFAM: SurA N-terminal domain; PPIC-type PPIASE domain
YP_005376556.1	PFAM: Organic solvent tolerance protein
YP_005376557.1	PFAM: Histone deacetylase domain
YP_005376558.1	PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase
YP_005376559.1	PFAM: FAD binding domain; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
YP_005376560.1	PFAM: FAD binding domain; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
YP_005376561.1	PFAM: Redoxin
YP_005376562.1	PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I
YP_005376563.1	PFAM: Pyridoxal-phosphate dependent enzyme
YP_005376564.1	PFAM: S1/P1 Nuclease
YP_005376565.1	PFAM: Pyruvate kinase, barrel domain; Pyruvate kinase, alpha/beta domain; TIGRFAM: pyruvate kinase
YP_005376566.1	PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_005376567.1	PFAM: Fructose-bisphosphate aldolase class-I
YP_005376570.1	PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast
YP_005376571.1	PFAM: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: ribose 5-phosphate isomerase
YP_005376572.1	PFAM: Protein of unknown function DUF55
YP_005376573.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase
YP_005376574.1	PFAM: Cell division protein ZapA
YP_005376575.1	TIGRFAM: TIGR02449 family protein
YP_005376576.1	PFAM: Uncharacterised protein family (UPF0149)
YP_005376577.1	PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24
YP_005376578.1	PFAM: Metallopeptidase family M24
YP_005376579.1	PFAM: Radical SAM superfamily; HemN C-terminal region; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase
YP_005376580.1	PFAM: Ham1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
YP_005376581.1	PFAM: 3' exoribonuclease family, domain 1; 3' exoribonuclease family, domain 2; TIGRFAM: ribonuclease PH
YP_005376582.1	PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein
YP_005376583.1	PFAM: Guanylate kinase; TIGRFAM: guanylate kinase
YP_005376584.1	PFAM: ABC transporter
YP_005376585.1	PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein
YP_005376586.1	PFAM: mce related protein
YP_005376587.1	PFAM: Toluene tolerance, Ttg2
YP_005376588.1	PFAM: STAS domain
YP_005376589.1	PFAM: VacJ like lipoprotein
YP_005376590.1	PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit
YP_005376591.1	PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_005376592.1	PFAM: Putative peptidoglycan binding domain; TIGRFAM: lytic murein transglycosylase
YP_005376593.1	PFAM: S-adenosylmethionine-dependent methyltransferase
YP_005376594.1	PFAM: Periplasmic glucan biosynthesis protein, MdoG
YP_005376595.1	PFAM: short chain dehydrogenase
YP_005376596.1	PFAM: Thioesterase superfamily
YP_005376598.1	PFAM: Glutathionylspermidine synthase
YP_005376599.1	PFAM: Protein of unknown function (DUF1190)
YP_005376600.1	PFAM: Phosphotransferase enzyme family
YP_005376601.1	PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_005376602.1	PFAM: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain
YP_005376603.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2248)
YP_005376604.1	PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_005376607.1	PFAM: Permease family
YP_005376608.1	PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_005376609.1	PFAM: Uncharacterized ACR, YhhQ family COG1738; TIGRFAM: conserved hypothetical integral membrane protein
YP_005376610.1	PFAM: Phosphoglycerate mutase family
YP_005376611.1	PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2
YP_005376612.1	PFAM: ABC transporter; TIGRFAM: ATP-binding cassette protein, ChvD family
YP_005376613.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005376614.1	PFAM: Domain of unknown function (DUF3315)
YP_005376615.1	PFAM: Serine hydroxymethyltransferase
YP_005376616.1	PFAM: ATP cone domain; TIGRFAM: transcriptional regulator NrdR
YP_005376617.1	PFAM: RibD C-terminal domain; Cytidine and deoxycytidylate deaminase zinc-binding region; TIGRFAM: riboflavin-specific deaminase C-terminal domain; riboflavin biosynthesis protein RibD
YP_005376619.1	PFAM: Nitroreductase family
YP_005376620.1	PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit
YP_005376621.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_005376622.1	PFAM: LD-carboxypeptidase
YP_005376623.1	PFAM: 6,7-dimethyl-8-ribityllumazine synthase; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_005376624.1	PFAM: NusB family; TIGRFAM: transcription antitermination factor NusB
YP_005376625.1	PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: thiamine-monophosphate kinase
YP_005376626.1	PFAM: Phosphatidylglycerophosphatase A
YP_005376627.1	PFAM: Aldo/keto reductase family
YP_005376628.1	PFAM: Hemin uptake protein hemP
YP_005376630.1	PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family
YP_005376631.1	TIGRFAM: RND family efflux transporter, MFP subunit
YP_005376632.1	PFAM: ABC transporter
YP_005376633.1	PFAM: Predicted permease
YP_005376634.1	PFAM: Predicted permease
YP_005376636.1	PFAM: Predicted permease
YP_005376637.1	PFAM: Predicted permease
YP_005376638.1	PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_005376639.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_005376640.1	PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family
YP_005376641.1	PFAM: SPFH domain / Band 7 family
YP_005376642.1	PFAM: NfeD-like
YP_005376643.1	PFAM: Protein of unknown function (DUF1212)
YP_005376644.1	PFAM: H-NS histone family
YP_005376645.1	PFAM: Anticodon binding domain; YbaK / prolyl-tRNA synthetases associated domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: prolyl-tRNA synthetase, family II
YP_005376646.1	PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_005376648.1	PFAM: Acetyltransferase (GNAT) family; TIGRFAM: ribosomal-protein-alanine acetyltransferase
YP_005376649.1	PFAM: Protein of unknown function (DUF1022)
YP_005376650.1	PFAM: YceI-like domain
YP_005376651.1	PFAM: Zinc-finger domain
YP_005376652.1	PFAM: Glycosyl transferases group 1
YP_005376653.1	PFAM: O-Antigen ligase
YP_005376654.1	PFAM: Glycosyl transferase family 2
YP_005376655.1	PFAM: Glycosyl transferases group 1
YP_005376656.1	PFAM: Polysaccharide deacetylase; manually curated
YP_005376657.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase
YP_005376658.1	PFAM: Glycosyl transferases group 1; 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase)
YP_005376659.1	PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family
YP_005376660.1	PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005376661.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005376662.1	PFAM: Ferritin-like domain
YP_005376664.1	PFAM: Inorganic pyrophosphatase
YP_005376665.1	PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_005376666.1	PFAM: Bacterial transferase hexapeptide (three repeats)
YP_005376667.1	PFAM: O-Antigen ligase
YP_005376668.1	PFAM: Glycosyl transferases group 1
YP_005376669.1	PFAM: Glycosyl transferases group 1
YP_005376670.1	PFAM: Beta-galactosidase
YP_005376671.1	PFAM: Glycosyl transferases group 1
YP_005376672.1	PFAM: Chain length determinant protein
YP_005376673.1	PFAM: Polysaccharide biosynthesis/export protein; SLBB domain
YP_005376674.1	PFAM: Glycosyl transferase family 2
YP_005376675.1	PFAM: Bacterial sugar transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
YP_005376676.1	PFAM: Adenylate kinase; TIGRFAM: adenylate kinases
YP_005376677.1	PFAM: Mur ligase family, glutamate ligase domain; Mur ligase family, catalytic domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase
YP_005376678.1	PFAM: ATP-dependent protease La (LON) domain
YP_005376679.1	PFAM: Aminotransferase class-III; TIGRFAM: acetylornithine and succinylornithine transaminases
YP_005376680.1	PFAM: Major Facilitator Superfamily
YP_005376681.1	PFAM: Aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase
YP_005376682.1	PFAM: Rubredoxin
YP_005376685.1	PFAM: Peptidase family M48
YP_005376686.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Hsp90 protein
YP_005376687.1	PFAM: Protein of unknown function (DUF3617)
YP_005376688.1	PFAM: Phosphoesterase family
YP_005376689.1	PFAM: Multicopper oxidase
YP_005376690.1	PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC
YP_005376691.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_005376692.1	PFAM: Phosphotransferase enzyme family
YP_005376693.1	PFAM: Membrane transport protein
YP_005376694.1	PFAM: NADP oxidoreductase coenzyme F420-dependent
YP_005376695.1	PFAM: S4 domain
YP_005376696.1	PFAM: short chain dehydrogenase
YP_005376697.1	PFAM: Catalase; Catalase-related immune-responsive
YP_005376698.1	PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: urease accessory protein UreG
YP_005376699.1	PFAM: UreF
YP_005376700.1	PFAM: UreE urease accessory protein, N-terminal domain; UreE urease accessory protein, C-terminal domain
YP_005376701.1	PFAM: Amidohydrolase family; Urease alpha-subunit, N-terminal domain; TIGRFAM: urease, alpha subunit
YP_005376702.1	PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit
YP_005376703.1	PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit
YP_005376704.1	PFAM: UreD urease accessory protein
YP_005376705.1	PFAM: Phosphoglucose isomerase
YP_005376706.1	PFAM: Sulfate transporter family
YP_005376707.1	PFAM: Major Facilitator Superfamily
YP_005376708.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005376710.1	PFAM: Phosphoglucose isomerase
YP_005376711.1	PFAM: Uncharacterized ACR, YdiU/UPF0061 family
YP_005376712.1	PFAM: Peptidase family M13
YP_005376713.1	PFAM: Nuclease-related domain; UvrD/REP helicase
YP_005376714.1	PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase
YP_005376715.1	PFAM: Acetyltransferase (GNAT) family
YP_005376716.1	PFAM: Protein of unknown function (DUF1345)
YP_005376718.1	PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA topoisomerase IV, A subunit, proteobacterial
YP_005376719.1	PFAM: N-formylglutamate amidohydrolase
YP_005376722.1	PFAM: Bacterial extracellular solute-binding protein
YP_005376723.1	PFAM: Binding-protein-dependent transport system inner membrane component
YP_005376724.1	PFAM: Binding-protein-dependent transport system inner membrane component
YP_005376725.1	PFAM: ABC transporter; TOBE domain
YP_005376726.1	PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain
YP_005376727.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase
YP_005376728.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005376729.1	PFAM: Aldehyde dehydrogenase family
YP_005376731.1	PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_005376732.1	PFAM: Prolyl oligopeptidase, N-terminal beta-propeller domain; Prolyl oligopeptidase family
YP_005376733.1	PFAM: Domain of unknown function (DUF3412); Possible lysine decarboxylase
YP_005376734.1	PFAM: FAD dependent oxidoreductase
YP_005376735.1	PFAM: Major intrinsic protein; TIGRFAM: MIP family channel proteins
YP_005376736.1	PFAM: FGGY family of carbohydrate kinases, N-terminal domain; FGGY family of carbohydrate kinases, C-terminal domain; TIGRFAM: glycerol kinase
YP_005376737.1	PFAM: pfkB family carbohydrate kinase
YP_005376738.1	PFAM: MreB/Mbl protein; TIGRFAM: cell shape determining protein, MreB/Mrl family
YP_005376739.1	PFAM: rod shape-determining protein MreC; TIGRFAM: rod shape-determining protein MreC
YP_005376740.1	PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD
YP_005376741.1	PFAM: Penicillin binding protein transpeptidase domain; Penicillin-binding Protein dimerisation domain; TIGRFAM: penicillin-binding protein 2
YP_005376742.1	PFAM: Cell cycle protein; TIGRFAM: rod shape-determining protein RodA
YP_005376743.1	TIGRFAM: lytic murein transglycosylase B
YP_005376744.1	PFAM: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; Sporulation related domain; TIGRFAM: rare lipoprotein A
YP_005376745.1	PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain
YP_005376746.1	PFAM: Protein of unknown function (DUF493)
YP_005376747.1	PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: lipoate-protein ligase B
YP_005376748.1	PFAM: Radical SAM superfamily; TIGRFAM: lipoate synthase
YP_005376749.1	PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_005376750.1	PFAM: Cytosol aminopeptidase family, catalytic domain
YP_005376751.1	PFAM: LysM domain
YP_005376752.1	PFAM: Ribonucleotide reductase, barrel domain; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
YP_005376753.1	PFAM: Histone H1-like nucleoprotein HC2
YP_005376755.1	TIGRFAM: HipA N-terminal domain
YP_005376756.1	PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family
YP_005376757.1	PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 1
YP_005376758.1	PFAM: Shikimate / quinate 5-dehydrogenase; Glutamyl-tRNAGlu reductase, N-terminal domain; Glutamyl-tRNAGlu reductase, dimerisation domain; TIGRFAM: glutamyl-tRNA reductase
YP_005376760.1	PFAM: Outer membrane lipoprotein LolB; TIGRFAM: outer membrane lipoprotein LolB
YP_005376761.1	PFAM: Acetyltransferase (GNAT) family; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase
YP_005376762.1	PFAM: Phosphoribosyl transferase domain; TIGRFAM: ribose-phosphate pyrophosphokinase
YP_005376763.1	PFAM: Ribosomal L25p family; TIGRFAM: ribosomal protein L25, Ctc-form
YP_005376764.1	PFAM: Peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase
YP_005376765.1	PFAM: GTPase of unknown function; Protein of unknown function (DUF933); TIGRFAM: GTP-binding protein YchF
YP_005376767.1	PFAM: Uncharacterised protein family (UPF0150)
YP_005376768.1	PFAM: Restriction endonuclease
YP_005376769.1	PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM)
YP_005376770.1	PFAM: Type I restriction modification DNA specificity domain
YP_005376772.1	PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; Type I restriction and modification enzyme - subunit R C terminal; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family
YP_005376773.1	PFAM: PIN domain
YP_005376774.1	PFAM: Domain of unknown function (DUF955)
YP_005376778.1	PFAM: Protein of unknown function (DUF1311)
YP_005376782.1	manually curated
YP_005376786.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB
YP_005376790.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005376792.1	PFAM: Protein of unknown function (DUF1338)
YP_005376793.1	PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1
YP_005376794.1	PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_005376795.1	PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial
YP_005376796.1	PFAM: Transcription termination factor nusG; KOW motif; TIGRFAM: transcription termination/antitermination factor NusG
YP_005376797.1	PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11
YP_005376798.1	PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast
YP_005376799.1	PFAM: Ribosomal protein L10
YP_005376800.1	PFAM: Ribosomal protein L7/L12 C-terminal domain; TIGRFAM: ribosomal protein L7/L12
YP_005376801.1	PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit
YP_005376802.1	PFAM: RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 3; TIGRFAM: DNA-directed RNA polymerase, beta' subunit, predominant form
YP_005376803.1	PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle
YP_005376804.1	PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle
YP_005376805.1	PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_005376806.1	PFAM: Elongation factor Tu domain 2; Elongation factor Tu C-terminal domain; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; translation elongation factor TU
YP_005376808.1	PFAM: Bacteriocin class II with double-glycine leader peptide
YP_005376810.1	PFAM: 2-nitropropane dioxygenase
YP_005376811.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_005376812.1	PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle
YP_005376813.1	PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial
YP_005376814.1	PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle
YP_005376815.1	PFAM: Ribosomal protein L23
YP_005376816.1	PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar
YP_005376817.1	PFAM: Ribosomal protein S19; TIGRFAM: ribosomal protein S19, bacterial/organelle
YP_005376818.1	PFAM: Ribosomal protein L22p/L17e; TIGRFAM: ribosomal protein L22, bacterial type
YP_005376819.1	PFAM: KH domain; Ribosomal protein S3, C-terminal domain; Ribosomal protein S3, N-terminal domain; TIGRFAM: ribosomal protein S3, bacterial type
YP_005376820.1	PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L16, bacterial/organelle
YP_005376821.1	PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29
YP_005376822.1	PFAM: Ribosomal protein S17; TIGRFAM: 30S ribosomal protein S17
YP_005376823.1	PFAM: Ribosomal protein L14p/L23e; TIGRFAM: ribosomal protein L14, bacterial/organelle
YP_005376824.1	PFAM: KOW motif; TIGRFAM: ribosomal protein L24, bacterial/organelle
YP_005376825.1	PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5
YP_005376826.1	PFAM: Ribosomal protein S14p/S29e
YP_005376827.1	PFAM: Ribosomal protein S8
YP_005376828.1	PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type
YP_005376829.1	PFAM: Ribosomal L18p/L5e family; TIGRFAM: ribosomal protein L18, bacterial type
YP_005376830.1	PFAM: Ribosomal protein S5, C-terminal domain; Ribosomal protein S5, N-terminal domain; TIGRFAM: ribosomal protein S5, bacterial/organelle type
YP_005376831.1	PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle
YP_005376832.1	PFAM: Ribosomal protein L18e/L15; TIGRFAM: ribosomal protein L15, bacterial/organelle
YP_005376833.1	PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit
YP_005376834.1	PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13
YP_005376835.1	PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11
YP_005376836.1	PFAM: Ribosomal protein S4/S9 N-terminal domain; S4 domain; TIGRFAM: ribosomal protein S4, bacterial/organelle type
YP_005376837.1	PFAM: RNA polymerase Rpb3/Rpb11 dimerisation domain; RNA polymerase Rpb3/RpoA insert domain; Bacterial RNA polymerase, alpha chain C terminal domain; TIGRFAM: DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
YP_005376838.1	PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17
YP_005376839.1	PFAM: Disulfide bond formation protein DsbB
YP_005376840.1	PFAM: Class-II DAHP synthetase family; TIGRFAM: 3-deoxy-7-phosphoheptulonate synthase, class II
YP_005376841.1	PFAM: Cytochrome c
YP_005376842.1	PFAM: Cytochrome c
YP_005376843.1	PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: mismatch-specific thymine-DNA glycosylate (mug)
YP_005376844.1	PFAM: Mechanosensitive ion channel
YP_005376845.1	PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_005376846.1	TIGRFAM: TIGR02099 family protein
YP_005376847.1	PFAM: Putative modulator of DNA gyrase
YP_005376848.1	PFAM: PA domain; Peptidase family M28
YP_005376849.1	PFAM: Predicted permease
YP_005376850.1	PFAM: Predicted permease
YP_005376851.1	PFAM: YceI-like domain
YP_005376852.1	PFAM: Protein of unknown function (DUF615)
YP_005376853.1	PFAM: Protein of unknown function (DUF1653)
YP_005376854.1	PFAM: Putative modulator of DNA gyrase
YP_005376856.1	PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative
YP_005376857.1	PFAM: Exonuclease VII small subunit; TIGRFAM: exodeoxyribonuclease VII, small subunit
YP_005376858.1	PFAM: TilS substrate C-terminal domain; PP-loop family; TilS substrate binding domain; TIGRFAM: tRNA(Ile)-lysidine synthetase, C-terminal domain; tRNA(Ile)-lysidine synthetase, N-terminal domain
YP_005376859.1	PFAM: Adenosine/AMP deaminase
YP_005376861.1	PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain; PAS fold; TIGRFAM: PAS domain S-box
YP_005376862.1	PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_005376863.1	PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_005376864.1	PFAM: Natural resistance-associated macrophage protein; TIGRFAM: NRAMP (natural resistance-associated macrophage protein) metal ion transporters
YP_005376865.1	PFAM: Ribonuclease HII
YP_005376866.1	PFAM: Lipid-A-disaccharide synthetase; TIGRFAM: lipid-A-disaccharide synthase
YP_005376867.1	PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
YP_005376868.1	PFAM: FabA-like domain; TIGRFAM: beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ
YP_005376869.1	PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; Bacterial transferase hexapeptide (three repeats); TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
YP_005376870.1	PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein
YP_005376871.1	PFAM: Peptidase family M50; PDZ domain (Also known as DHR or GLGF); TIGRFAM: RIP metalloprotease RseP
YP_005376872.1	PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
YP_005376873.1	PFAM: Cytidylyltransferase family
YP_005376874.1	PFAM: Putative undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase
YP_005376875.1	PFAM: Ribosome recycling factor; TIGRFAM: ribosome recycling factor
YP_005376876.1	PFAM: Amino acid kinase family; TIGRFAM: uridylate kinase
YP_005376877.1	PFAM: Elongation factor TS; UBA/TS-N domain; TIGRFAM: translation elongation factor Ts
YP_005376878.1	PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type
YP_005376879.1	PFAM: Metallopeptidase family M24; TIGRFAM: methionine aminopeptidase, type I
YP_005376880.1	PFAM: GlnD PII-uridylyltransferase; HD domain; ACT domain; Nucleotidyltransferase domain; TIGRFAM: [Protein-PII] uridylyltransferase
YP_005376881.1	PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005376882.1	PFAM: Bacterial transferase hexapeptide (three repeats); TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
YP_005376883.1	PFAM: ArsC family; TIGRFAM: transcriptional regulator, Spx/MgsR family
YP_005376884.1	PFAM: VIT family
YP_005376885.1	PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: succinyl-diaminopimelate desuccinylase, proteobacterial clade
YP_005376886.1	PFAM: Predicted periplasmic protein (DUF2233)
YP_005376887.1	PFAM: NUDIX domain
YP_005376888.1	PFAM: Glutaredoxin-like domain (DUF836)
YP_005376889.1	PFAM: YceI-like domain
YP_005376890.1	PFAM: Cytochrome b(N-terminal)/b6/petB
YP_005376891.1	PFAM: Phospholipase A1
YP_005376892.1	PFAM: 'Cold-shock' DNA-binding domain
YP_005376893.1	PFAM: 'Cold-shock' DNA-binding domain
YP_005376895.1	PFAM: Cytochrome C'
YP_005376896.1	PFAM: ThiF family
YP_005376897.1	PFAM: short chain dehydrogenase; TIGRFAM: acetoacetyl-CoA reductase
YP_005376898.1	PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase
YP_005376899.1	PFAM: DSBA-like thioredoxin domain
YP_005376900.1	PFAM: Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA C-terminal domain
YP_005376901.1	PFAM: recA bacterial DNA recombination protein; TIGRFAM: protein RecA
YP_005376902.1	PFAM: RecX family
YP_005376903.1	PFAM: DHHA1 domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetases class II (A); TIGRFAM: alanine--tRNA ligase
YP_005376904.1	PFAM: Global regulator protein family; TIGRFAM: carbon storage regulator (csrA)
YP_005376905.1	PFAM: alpha/beta hydrolase fold; manually curated
YP_005376906.1	PFAM: Carbon-nitrogen hydrolase
YP_005376908.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_005376909.1	PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase
YP_005376910.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005376911.1	PFAM: Domain of unknown function (DUF336)
YP_005376912.1	PFAM: GAF domain
YP_005376913.1	PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: dethiobiotin synthase
YP_005376915.1	PFAM: Peptidase family M3
YP_005376917.1	PFAM: Membrane bound FAD containing D-sorbitol dehydrogenase
YP_005376918.1	PFAM: GMC oxidoreductase; FAD dependent oxidoreductase
YP_005376919.1	PFAM: Cytochrome c
YP_005376920.1	PFAM: Domain of unknown function (DUF336)
YP_005376921.1	PFAM: Glutamate-cysteine ligase family 2(GCS2); TIGRFAM: glutamate--cysteine ligase, plant type
YP_005376922.1	PFAM: Lipid A 3-O-deacylase (PagL)
YP_005376923.1	PFAM: Rho termination factor, N-terminal domain; Rho termination factor, RNA-binding domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: transcription termination factor Rho
YP_005376924.1	PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_005376925.1	PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_005376926.1	PFAM: ABC transporter; TIGRFAM: cell division ATP-binding protein FtsE
YP_005376927.1	PFAM: Predicted permease
YP_005376928.1	PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase
YP_005376929.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; Sigma-70 factor, region 1.2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; alternative sigma factor RpoH
YP_005376930.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005376931.1	PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005376932.1	PFAM: AcrB/AcrD/AcrF family
YP_005376933.1	TIGRFAM: RND family efflux transporter, MFP subunit
YP_005376934.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005376935.1	PFAM: Transaldolase; TIGRFAM: transaldolase
YP_005376936.1	PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: primosomal protein N'
YP_005376937.1	PFAM: MatE; TIGRFAM: putative efflux protein, MATE family
YP_005376938.1	PFAM: Asparaginase
YP_005376939.1	PFAM: NADPH-dependent FMN reductase; TIGRFAM: NAD(P)H:quinone oxidoreductase, type IV
YP_005376940.1	PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN)
YP_005376941.1	PFAM: AhpC/TSA family
YP_005376942.1	PFAM: Protein of unknown function (DUF1161)
YP_005376943.1	PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain
YP_005376945.1	PFAM: SET domain
YP_005376948.1	PFAM: Amino acid permease
YP_005376949.1	PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_005376951.1	PFAM: Septum formation topological specificity factor MinE; TIGRFAM: cell division topological specificity factor MinE
YP_005376952.1	PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: septum site-determining protein MinD
YP_005376953.1	PFAM: Septum formation inhibitor MinC, C-terminal domain; Septum formation inhibitor MinC, N-terminal domain; TIGRFAM: septum site-determining protein MinC
YP_005376955.1	PFAM: Histidine kinase
YP_005376956.1	PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_005376958.1	PFAM: ABC transporter
YP_005376960.1	PFAM: ABC-type uncharacterized transport system
YP_005376961.1	PFAM: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
YP_005376963.1	PFAM: Protein of unknown function (DUF461)
YP_005376964.1	PFAM: SCO1/SenC, involved in biogenesis of respiratory and photosynthetic systems
YP_005376965.1	PFAM: Protein of unknown function (DUF423)
YP_005376967.1	PFAM: SPFH domain / Band 7 family
YP_005376968.1	PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylglycinamide formyltransferase 2
YP_005376969.1	PFAM: Arginine-tRNA-protein transferase, C terminus; Arginine-tRNA-protein transferase, N terminus
YP_005376971.1	PFAM: Acyl-CoA thioesterase; TIGRFAM: acyl-CoA thioesterase II
YP_005376972.1	PFAM: N-acetylmuramoyl-L-alanine amidase
YP_005376974.1	PFAM: Putative RNA methylase family UPF0020; S-adenosylmethionine-dependent methyltransferase; THUMP domain
YP_005376976.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_005376977.1	PFAM: Ketopantoate reductase PanE/ApbA; Ketopantoate reductase PanE/ApbA C terminal; TIGRFAM: 2-dehydropantoate 2-reductase
YP_005376978.1	PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); Domain of unknown function (DUF3418); DEAD/DEAH box helicase; Domain of unknown function (DUF1605); TIGRFAM: ATP-dependent helicase HrpA
YP_005376979.1	PFAM: TGS domain; Region found in RelA / SpoT proteins; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family
YP_005376981.1	PFAM: NAD dependent epimerase/dehydratase family
YP_005376982.1	PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1B
YP_005376984.1	PFAM: Prephenate dehydrogenase; ACT domain
YP_005376985.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005376987.1	PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_005376988.1	PFAM: Ferric reductase like transmembrane component
YP_005376989.1	PFAM: Oxidoreductase molybdopterin binding domain
YP_005376990.1	PFAM: Universal stress protein family
YP_005376991.1	PFAM: Bacterial regulatory proteins, gntR family; FCD domain
YP_005376992.1	PFAM: Major Facilitator Superfamily
YP_005376993.1	PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_005376994.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005376995.1	PFAM: Universal stress protein family
YP_005376996.1	PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain
YP_005376997.1	PFAM: GcpE protein; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
YP_005376999.1	PFAM: Leucyl/phenylalanyl-tRNA protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA--protein transferase
YP_005377000.1	PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
YP_005377002.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_005377003.1	PFAM: Metallo-beta-lactamase superfamily
YP_005377004.1	PFAM: Protein of unknown function, DUF482
YP_005377005.1	PFAM: DSBA-like thioredoxin domain
YP_005377006.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: thioredoxin-disulfide reductase
YP_005377007.1	PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_005377008.1	PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein
YP_005377010.1	PFAM: Outer membrane lipoprotein carrier protein LolA; TIGRFAM: periplasmic chaperone LolA
YP_005377011.1	PFAM: Nitroreductase family
YP_005377012.1	PFAM: Ftsk gamma domain; FtsK/SpoIIIE family
YP_005377013.1	PFAM: Methyltransferase domain
YP_005377015.1	PFAM: Calcineurin-like phosphoesterase; Type 5 capsule protein repressor C terminal; TIGRFAM: exonuclease SbcD
YP_005377016.1	TIGRFAM: exonuclease SbcC
YP_005377017.1	PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
YP_005377018.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005377019.1	PFAM: Glutaredoxin 2, C terminal domain; TIGRFAM: Glutaredoxin, GrxB family
YP_005377020.1	PFAM: Helix-turn-helix
YP_005377021.1	PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; Tar ligand binding domain homologue
YP_005377023.1	PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: phage/conjugal plasmid C-4 type zinc finger protein, TraR family
YP_005377024.1	PFAM: Formate/nitrite transporter
YP_005377025.1	PFAM: Methyltransferase small domain
YP_005377026.1	PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase
YP_005377027.1	PFAM: Domain of unknown function (DUF1730); TIGRFAM: iron-sulfur cluster binding protein, putative
YP_005377028.1	PFAM: YjeF-related protein N-terminus; Carbohydrate kinase; TIGRFAM: yjeF N-terminal region; yjeF C-terminal region, hydroxyethylthiazole kinase-related
YP_005377029.1	PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family
YP_005377030.1	PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX)
YP_005377031.1	PFAM: 3-hydroxyanthranilic acid dioxygenase; TIGRFAM: 3-hydroxyanthranilate 3,4-dioxygenase
YP_005377032.1	PFAM: Ribonuclease E/G family; S1 RNA binding domain; TIGRFAM: ribonuclease, Rne/Rng family
YP_005377033.1	PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_005377034.1	PFAM: CAAX amino terminal protease family
YP_005377035.1	PFAM: Pterin 4 alpha carbinolamine dehydratase
YP_005377036.1	PFAM: Iron-sulphur cluster biosynthesis; NifU-like domain; TIGRFAM: IscR-regulated protein YhgI
YP_005377037.1	PFAM: Cytochrome c
YP_005377038.1	PFAM: Cytochrome c
YP_005377039.1	PFAM: TraB family; TIGRFAM: pheromone shutdown-related protein TraB
YP_005377040.1	PFAM: Carbon-nitrogen hydrolase
YP_005377041.1	PFAM: Porphyromonas-type peptidyl-arginine deiminase
YP_005377043.1	PFAM: ABC transporter
YP_005377045.1	PFAM: DHHA1 domain; DHH family; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ
YP_005377047.1	PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain
YP_005377048.1	PFAM: Helicase conserved C-terminal domain; TRCF domain; CarD-like/TRCF domain; DEAD/DEAH box helicase; TIGRFAM: transcription-repair coupling factor (mfd)
YP_005377049.1	PFAM: Acetyltransferase (GNAT) family
YP_005377050.1	PFAM: Outer membrane lipoprotein Slp family
YP_005377051.1	PFAM: Protein of unknown function (DUF519)
YP_005377052.1	PFAM: EamA-like transporter family
YP_005377053.1	PFAM: AsmA family
YP_005377054.1	PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain
YP_005377055.1	PFAM: Ferric uptake regulator family
YP_005377056.1	PFAM: Transcriptional regulator PadR-like family
YP_005377057.1	PFAM: EamA-like transporter family
YP_005377058.1	PFAM: ABC transporter
YP_005377059.1	PFAM: Ribosomal RNA adenine dimethylase
YP_005377060.1	PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_005377061.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
YP_005377062.1	PFAM: Semialdehyde dehydrogenase, dimerisation domain; Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)
YP_005377064.1	TIGRFAM: FimV C-terminal domain; FimV N-terminal domain
YP_005377065.1	PFAM: tRNA pseudouridine synthase; TIGRFAM: pseudouridylate synthase I
YP_005377066.1	PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase
YP_005377067.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377068.1	PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: tryptophan synthase, beta subunit
YP_005377069.1	PFAM: Tryptophan synthase alpha chain; TIGRFAM: tryptophan synthase, alpha subunit
YP_005377070.1	PFAM: Carboxyl transferase domain; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_005377071.1	PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes
YP_005377072.1	PFAM: PAP2 superfamily
YP_005377073.1	PFAM: Glycosyl transferases group 1
YP_005377075.1	PFAM: tRNA synthetases class I (E and Q), catalytic domain; TIGRFAM: glutamyl-tRNA synthetase, bacterial family
YP_005377077.1	PFAM: Ferric uptake regulator family
YP_005377078.1	PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter
YP_005377080.1	PFAM: Protein of unknown function (DUF3108)
YP_005377081.1	PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent
YP_005377082.1	PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylaminoimidazole synthetase
YP_005377083.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2066)
YP_005377084.1	PFAM: Domain of unknown function DUF20
YP_005377085.1	PFAM: Bacterial dnaA protein; TIGRFAM: DnaA regulatory inactivator Hda
YP_005377086.1	PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit
YP_005377087.1	PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family
YP_005377088.1	PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF
YP_005377089.1	PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_005377091.1	PFAM: Carbohydrate-selective porin, OprB family
YP_005377092.1	PFAM: Cytochrome c
YP_005377093.1	PFAM: GMC oxidoreductase
YP_005377094.1	PFAM: Membrane bound FAD containing D-sorbitol dehydrogenase
YP_005377095.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377096.1	PFAM: Protein of unknown function (DUF1275)
YP_005377097.1	PFAM: Stress responsive A/B Barrel Domain
YP_005377099.1	PFAM: Sodium/hydrogen exchanger family
YP_005377101.1	PFAM: Phage integrase family
YP_005377109.1	PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_005377112.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated
YP_005377117.1	manually curated
YP_005377118.1	PFAM: Helix-turn-helix; Peptidase S24-like; manually curated
YP_005377122.1	PFAM: Protein of unknown function (DUF1376)
YP_005377127.1	PFAM: Protein of unknown function (DUF1364); manually curated
YP_005377128.1	PFAM: VRR-NUC domain
YP_005377130.1	TIGRFAM: probable addiction module antidote protein
YP_005377131.1	PFAM: Phage derived protein Gp49-like (DUF891); TIGRFAM: putative addiction module killer protein
YP_005377132.1	PFAM: Phage regulatory protein Rha (Phage_pRha)
YP_005377134.1	PFAM: Phage lysozyme
YP_005377135.1	manually curated
YP_005377137.1	PFAM: Phage DNA packaging protein Nu1
YP_005377138.1	PFAM: Phage terminase large subunit (GpA)
YP_005377140.1	PFAM: Phage portal protein, lambda family; TIGRFAM: phage portal protein, lambda family
YP_005377141.1	PFAM: Peptidase family S49
YP_005377147.1	PFAM: Phage-related baseplate assembly protein; TIGRFAM: phage baseplate assembly protein V
YP_005377149.1	PFAM: Gene 25-like lysozyme
YP_005377150.1	PFAM: Baseplate J-like protein
YP_005377151.1	PFAM: Phage tail protein (Tail_P2_I); TIGRFAM: phage tail protein, P2 protein I family
YP_005377154.1	PFAM: Phage tail sheath protein
YP_005377155.1	PFAM: Phage tail tube protein FII; TIGRFAM: phage contractile tail tube protein, P2 family
YP_005377157.1	PFAM: Phage-related minor tail protein
YP_005377158.1	PFAM: Phage P2 GpU
YP_005377159.1	PFAM: Phage Tail Protein X
YP_005377160.1	PFAM: Phage late control gene D protein (GPD)
YP_005377162.1	PFAM: HxlR-like helix-turn-helix
YP_005377163.1	PFAM: NmrA-like family; manually curated
YP_005377164.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_005377166.1	PFAM: EAL domain; Sensors of blue-light using FAD
YP_005377167.1	PFAM: EAL domain; Sensors of blue-light using FAD
YP_005377168.1	PFAM: Protein of unknown function (DUF3325)
YP_005377169.1	PFAM: PepSY-associated TM helix
YP_005377170.1	PFAM: Protein of unknown function (DUF3649)
YP_005377171.1	PFAM: Bacterial regulatory proteins, gntR family; FCD domain; manually curated
YP_005377173.1	PFAM: TonB-dependent Receptor Plug Domain
YP_005377174.1	PFAM: Helix-turn-helix
YP_005377176.1	PFAM: NUDIX domain
YP_005377177.1	PFAM: Pyridoxal-phosphate dependent enzyme
YP_005377178.1	PFAM: Bacterial regulatory proteins, tetR family; manually curated
YP_005377179.1	PFAM: Major Facilitator Superfamily
YP_005377180.1	PFAM: Bacterial regulatory proteins, gntR family; UTRA domain
YP_005377181.1	PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC
YP_005377182.1	PFAM: Rhodanese-like domain
YP_005377183.1	PFAM: Phosphotransferase enzyme family
YP_005377184.1	PFAM: NMT1/THI5 like
YP_005377185.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_005377187.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005377188.1	PFAM: Major Facilitator Superfamily
YP_005377189.1	PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase
YP_005377190.1	PFAM: Redoxin
YP_005377192.1	PFAM: alpha/beta hydrolase fold; TIGRFAM: homoserine O-acetyltransferase
YP_005377194.1	PFAM: Cytochrome C biogenesis protein
YP_005377195.1	PFAM: Redoxin; TIGRFAM: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily
YP_005377196.1	PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF
YP_005377197.1	PFAM: CcmE
YP_005377198.1	PFAM: Heme exporter protein D (CcmD); TIGRFAM: heme exporter protein CcmD
YP_005377199.1	PFAM: Cytochrome C assembly protein; TIGRFAM: heme exporter protein CcmC
YP_005377200.1	PFAM: CcmB protein; TIGRFAM: heme exporter protein CcmB
YP_005377201.1	PFAM: ABC transporter; TIGRFAM: heme ABC exporter, ATP-binding protein CcmA
YP_005377202.1	PFAM: Protein of unknown function (DUF3293)
YP_005377203.1	PFAM: FAD binding domain
YP_005377204.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoE
YP_005377205.1	PFAM: Anti sigma-E protein RseA, N-terminal domain
YP_005377206.1	PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family
YP_005377207.1	PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain
YP_005377208.1	PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type
YP_005377210.1	PFAM: RNase3 domain; Double-stranded RNA binding motif; TIGRFAM: ribonuclease III, bacterial
YP_005377211.1	PFAM: KH domain; GTPase of unknown function; TIGRFAM: GTP-binding protein Era; small GTP-binding protein domain
YP_005377212.1	PFAM: Recombination protein O C terminal; Recombination protein O N terminal; TIGRFAM: DNA repair protein RecO
YP_005377214.1	PFAM: Methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase I
YP_005377215.1	PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase
YP_005377219.1	PFAM: Protein of unknown function (DUF2884)
YP_005377221.1	PFAM: ABC transporter
YP_005377222.1	PFAM: Bacterial regulatory proteins, gntR family
YP_005377224.1	PFAM: TraB family
YP_005377228.1	PFAM: FAD binding domain; UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase
YP_005377229.1	PFAM: Dihydroorotate dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase, subfamily 2
YP_005377231.1	PFAM: Aldehyde dehydrogenase family
YP_005377232.1	PFAM: Uncharacterised BCR, YhbC family COG0779
YP_005377233.1	PFAM: NusA N-terminal domain; S1 RNA binding domain; TIGRFAM: transcription termination factor NusA; transcription termination factor NusA, C-terminal duplication
YP_005377234.1	PFAM: Elongation factor Tu domain 2; Translation-initiation factor 2; Translation initiation factor IF-2, N-terminal region; Elongation factor Tu GTP binding domain; Bacterial translation initiation factor IF-2 associated region; TIGRFAM: small GTP-binding protein domain; translation initiation factor IF-2
YP_005377235.1	PFAM: Ribosome-binding factor A; TIGRFAM: ribosome-binding factor A
YP_005377236.1	PFAM: TruB family pseudouridylate synthase (N terminal domain); TIGRFAM: tRNA pseudouridine 55 synthase
YP_005377237.1	PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle
YP_005377238.1	PFAM: KH domain; S1 RNA binding domain; 3' exoribonuclease family, domain 1; Polyribonucleotide nucleotidyltransferase, RNA binding domain; 3' exoribonuclease family, domain 2; TIGRFAM: polyribonucleotide nucleotidyltransferase
YP_005377240.1	PFAM: Protein of unknown function (DUF3037)
YP_005377241.1	PFAM: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E); TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit
YP_005377242.1	PFAM: alpha/beta hydrolase fold; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
YP_005377243.1	PFAM: Initiation factor 2 subunit family; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; S-methyl-5-thioribose-1-phosphate isomerase
YP_005377244.1	PFAM: GtrA-like protein
YP_005377245.1	PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A subunit
YP_005377246.1	PFAM: Helix-turn-helix
YP_005377247.1	PFAM: Major Facilitator Superfamily
YP_005377248.1	PFAM: Hsp20/alpha crystallin family
YP_005377249.1	PFAM: DnaJ C terminal region; DnaJ domain
YP_005377250.1	PFAM: HxlR-like helix-turn-helix
YP_005377251.1	PFAM: short chain dehydrogenase
YP_005377252.1	PFAM: Glycosyl hydrolases family 28; Pectinesterase
YP_005377253.1	PFAM: FAD binding domain
YP_005377254.1	PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator
YP_005377255.1	PFAM: Peptidase family M1
YP_005377256.1	PFAM: HI0933-like protein; TIGRFAM: flavoprotein, HI0933 family
YP_005377257.1	PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase
YP_005377258.1	PFAM: Phenazine biosynthesis-like protein; TIGRFAM: phenazine biosynthesis protein PhzF family
YP_005377259.1	PFAM: Rhomboid family
YP_005377261.1	PFAM: Predicted aminopeptidase (DUF2265)
YP_005377262.1	PFAM: Sodium/hydrogen exchanger family
YP_005377263.1	PFAM: Nicotinate phosphoribosyltransferase (NAPRTase) family; TIGRFAM: nicotinate phosphoribosyltransferase
YP_005377264.1	PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family
YP_005377265.1	PFAM: Binding-protein-dependent transport system inner membrane component
YP_005377266.1	PFAM: ABC transporter; NIL domain
YP_005377267.1	PFAM: Glutathione peroxidase
YP_005377268.1	PFAM: Pyridoxal-phosphate dependent enzyme
YP_005377269.1	TIGRFAM: homoserine O-acetyltransferase; manually curated
YP_005377270.1	PFAM: Cys/Met metabolism PLP-dependent enzyme; TIGRFAM: O-succinylhomoserine (thiol)-lyase
YP_005377271.1	PFAM: Homoserine dehydrogenase; Homoserine dehydrogenase, NAD binding domain
YP_005377272.1	PFAM: Amino acid permease
YP_005377273.1	PFAM: Fusaric acid resistance protein family
YP_005377274.1	PFAM: Protein of unknown function (DUF1656)
YP_005377275.1	PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_005377276.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005377278.1	PFAM: Serine dehydratase alpha chain; Serine dehydratase beta chain; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, single chain form
YP_005377279.1	PFAM: Peptidase C39 family; ABC transporter; ABC transporter transmembrane region
YP_005377281.1	PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme
YP_005377282.1	PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_005377283.1	PFAM: Dehydrogenase E1 component; TIGRFAM: pyruvate dehydrogenase E1 component, alpha subunit
YP_005377284.1	PFAM: Tryptophan 2,3-dioxygenase; TIGRFAM: tryptophan 2,3-dioxygenase
YP_005377285.1	PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family
YP_005377286.1	PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain
YP_005377287.1	PFAM: Methyltransferase domain
YP_005377288.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005377289.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein
YP_005377290.1	PFAM: Major Facilitator Superfamily
YP_005377291.1	PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain
YP_005377292.1	PFAM: Sulfotransferase domain
YP_005377293.1	PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_005377294.1	PFAM: Bacterial protein of unknown function (DUF937)
YP_005377295.1	PFAM: Transglycosylase associated protein
YP_005377297.1	PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase
YP_005377298.1	PFAM: NAD dependent epimerase/dehydratase family
YP_005377299.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005377300.1	PFAM: Alginate lyase
YP_005377301.1	PFAM: OmpA family
YP_005377302.1	PFAM: OmpA family
YP_005377303.1	PFAM: Integral membrane protein TerC family; TIGRFAM: integral membrane protein, YjbE family
YP_005377304.1	PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; manually curated
YP_005377305.1	PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase; 2-amino-3-ketobutyrate coenzyme A ligase
YP_005377306.1	PFAM: Domain of Unknown Function (DUF748)
YP_005377307.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: L-threonine 3-dehydrogenase
YP_005377308.1	PFAM: IPP transferase; TIGRFAM: tRNA dimethylallyltransferase; manually curated
YP_005377309.1	PFAM: LSM domain; TIGRFAM: RNA chaperone Hfq
YP_005377310.1	PFAM: GTPase of unknown function; TIGRFAM: GTP-binding protein HflX
YP_005377311.1	PFAM: NUDIX domain; Thiamine monophosphate synthase/TENI; TIGRFAM: mutator mutT protein; thiamine-phosphate pyrophosphorylase
YP_005377312.1	PFAM: Dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase
YP_005377313.1	PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family
YP_005377314.1	PFAM: Bacterial type II secretion system protein F domain
YP_005377315.1	PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB
YP_005377316.1	PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_005377317.1	PFAM: short chain dehydrogenase
YP_005377318.1	PFAM: Acetyltransferase (GNAT) family
YP_005377319.1	PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase
YP_005377320.1	PFAM: Major Facilitator Superfamily
YP_005377321.1	PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_005377322.1	PFAM: NlpC/P60 family
YP_005377324.1	PFAM: Protein of unknown function (DUF489)
YP_005377325.1	PFAM: tRNA methyl transferase; TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_005377326.1	PFAM: NUDIX domain
YP_005377327.1	PFAM: ATP-dependent Clp protease adaptor protein ClpS
YP_005377328.1	PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA
YP_005377329.1	PFAM: Translation initiation factor 1A / IF-1; TIGRFAM: translation initiation factor IF-1
YP_005377330.1	PFAM: Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn); TIGRFAM: putative polyhydroxyalkanoic acid system protein
YP_005377331.1	PFAM: FHA domain
YP_005377332.1	PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase
YP_005377333.1	PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II; TIGRFAM: chorismate mutase domain of proteobacterial P-protein, clade 2
YP_005377334.1	PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase
YP_005377335.1	PFAM: Cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase
YP_005377336.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377337.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
YP_005377340.1	manually curated
YP_005377341.1	PFAM: Hep_Hag; YadA-like C-terminal region; Haemagglutinin; manually curated
YP_005377342.1	PFAM: Protein of unknown function (DUF2827)
YP_005377343.1	PFAM: Protein of unknown function (DUF2827)
YP_005377344.1	PFAM: Protein of unknown function (DUF2827)
YP_005377346.1	PFAM: UvrB/uvrC motif; UvrC Helix-hairpin-helix N-terminal; GIY-YIG catalytic domain; TIGRFAM: excinuclease ABC, C subunit
YP_005377347.1	PFAM: CDP-alcohol phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_005377348.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005377349.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_005377352.1	PFAM: Alcohol dehydrogenase GroES-like domain
YP_005377353.1	PFAM: Major Facilitator Superfamily
YP_005377354.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005377355.1	PFAM: XdhC and CoxI family
YP_005377356.1	PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain
YP_005377357.1	PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase
YP_005377358.1	PFAM: Cytochrome c; manually curated
YP_005377360.1	PFAM: HxlR-like helix-turn-helix
YP_005377361.1	PFAM: NmrA-like family
YP_005377362.1	PFAM: RibD C-terminal domain
YP_005377363.1	PFAM: Major Facilitator Superfamily
YP_005377364.1	PFAM: short chain dehydrogenase
YP_005377365.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377366.1	PFAM: Bacterial regulatory proteins, luxR family; Autoinducer binding domain
YP_005377367.1	PFAM: Rieske [2Fe-2S] domain
YP_005377368.1	PFAM: Terpene synthase family, metal binding domain
YP_005377369.1	PFAM: Cytochrome P450
YP_005377370.1	PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: threonyl-tRNA synthetase
YP_005377372.1	PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain
YP_005377375.1	PFAM: Aldehyde dehydrogenase family
YP_005377376.1	PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_005377378.1	PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_005377379.1	PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ
YP_005377380.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005377381.1	PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005377382.1	PFAM: Protein of unknown function (DUF3313)
YP_005377384.1	PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PEP-utilising enzyme, N-terminal; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase
YP_005377385.1	PFAM: PTS HPr component phosphorylation site; TIGRFAM: Phosphotransferase System HPr (HPr) Family
YP_005377386.1	PFAM: PTS system fructose IIA component
YP_005377387.1	PFAM: P-loop ATPase protein family
YP_005377388.1	PFAM: HPr Serine kinase N terminus; HPr Serine kinase C-terminal domain; TIGRFAM: Hpr(Ser) kinase/phosphatase
YP_005377389.1	PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein
YP_005377390.1	PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54, DNA binding domain; Sigma-54 factor, core binding domain; TIGRFAM: RNA polymerase sigma-54 factor
YP_005377391.1	PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter
YP_005377392.1	PFAM: Protein of unknown function (DUF1239)
YP_005377393.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA
YP_005377394.1	PFAM: CBS domain; SIS domain; TIGRFAM: KpsF/GutQ family protein
YP_005377395.1	PFAM: BolA-like protein
YP_005377396.1	PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_005377397.1	PFAM: Voltage gated chloride channel
YP_005377398.1	PFAM: Putative ATPase (DUF699); TIGRFAM: exodeoxyribonuclease V, alpha subunit
YP_005377399.1	PFAM: UvrD/REP helicase; TIGRFAM: exodeoxyribonuclease V, beta subunit
YP_005377400.1	PFAM: Exodeoxyribonuclease V, gamma subunit; TIGRFAM: exodeoxyribonuclease V, gamma subunit
YP_005377401.1	PFAM: High-affinity nickel-transport protein; TIGRFAM: high-affinity nickel-transporter, HoxN/HupN/NixA family
YP_005377402.1	PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: cobalamin biosynthesis protein CobW
YP_005377403.1	PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit
YP_005377404.1	PFAM: AAA domain (dynein-related subfamily)
YP_005377406.1	PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; Cobalamin synthesis G N-terminal; TIGRFAM: precorrin-3B C17-methyltransferase
YP_005377407.1	PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase
YP_005377408.1	PFAM: Precorrin-8X methylmutase
YP_005377409.1	PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: precorrin-3B synthase
YP_005377410.1	PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit
YP_005377411.1	PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD
YP_005377412.1	PFAM: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase
YP_005377413.1	PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase
YP_005377414.1	PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD
YP_005377415.1	PFAM: Aminotransferase class I and II; TIGRFAM: L-threonine-O-3-phosphate decarboxylase
YP_005377416.1	PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ
YP_005377417.1	PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase
YP_005377418.1	PFAM: Phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_005377419.1	PFAM: Phosphoglycerate mutase family
YP_005377420.1	PFAM: Cobalamin-5-phosphate synthase; TIGRFAM: cobalamin 5'-phosphate synthase/cobalamin synthase
YP_005377421.1	PFAM: Nitroreductase family; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase
YP_005377422.1	PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase
YP_005377423.1	PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; TIGRFAM: cob(I)alamin adenosyltransferase
YP_005377424.1	PFAM: Cobalamin synthesis G C-terminus
YP_005377425.1	PFAM: short chain dehydrogenase
YP_005377426.1	PFAM: EamA-like transporter family
YP_005377427.1	PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain
YP_005377428.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005377429.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Secretin and TonB N terminus short domain
YP_005377430.1	PFAM: FecR protein
YP_005377431.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_005377434.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein
YP_005377438.1	PFAM: L,D-transpeptidase catalytic domain
YP_005377439.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005377440.1	PFAM: short chain dehydrogenase
YP_005377445.1	PFAM: SmpB protein; TIGRFAM: SsrA-binding protein
YP_005377446.1	PFAM: Polyketide cyclase / dehydrase and lipid transport
YP_005377447.1	PFAM: Uncharacterised protein family (UPF0125)
YP_005377448.1	PFAM: SmpA / OmlA family
YP_005377449.1	PFAM: Ferric uptake regulator family
YP_005377450.1	PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MASE1
YP_005377451.1	PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_005377452.1	PFAM: RecF/RecN/SMC N terminal domain; TIGRFAM: DNA repair protein RecN
YP_005377453.1	PFAM: HrcA protein C terminal domain; TIGRFAM: heat shock gene repressor HrcA
YP_005377454.1	PFAM: GrpE
YP_005377455.1	PFAM: Hsp70 protein; TIGRFAM: chaperone protein DnaK
YP_005377456.1	PFAM: DnaJ central domain (4 repeats); DnaJ C terminal region; DnaJ domain; TIGRFAM: chaperone protein DnaJ
YP_005377457.1	PFAM: Dihydrodipicolinate reductase, N-terminus; Dihydrodipicolinate reductase, C-terminus; TIGRFAM: dihydrodipicolinate reductase
YP_005377458.1	PFAM: Sodium/calcium exchanger protein
YP_005377460.1	PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit
YP_005377461.1	PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit
YP_005377462.1	PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreA
YP_005377464.1	PFAM: Fimbrial protein
YP_005377465.1	PFAM: Gram-negative pili assembly chaperone, C-terminal domain; Gram-negative pili assembly chaperone, N-terminal domain
YP_005377466.1	PFAM: Fimbrial Usher protein
YP_005377467.1	PFAM: Fimbrial protein
YP_005377468.1	PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type
YP_005377469.1	PFAM: Peptide methionine sulfoxide reductase; TIGRFAM: methionine-S-sulfoxide reductase
YP_005377470.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; NADH:flavin oxidoreductase / NADH oxidase family
YP_005377471.1	PFAM: Cytidylate kinase; TIGRFAM: cytidylate kinase
YP_005377472.1	PFAM: S1 RNA binding domain; TIGRFAM: ribosomal protein S1
YP_005377473.1	PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, beta subunit
YP_005377474.1	PFAM: FeoA domain
YP_005377475.1	PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB
YP_005377478.1	PFAM: PAS fold
YP_005377479.1	PFAM: Proline racemase
YP_005377480.1	PFAM: Dihydrodipicolinate synthetase family
YP_005377481.1	PFAM: Aldehyde dehydrogenase family
YP_005377482.1	PFAM: Beta-galactosidase
YP_005377483.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005377484.1	PFAM: Putative glycosyl hydrolase of unknown function (DUF1680)
YP_005377486.1	PFAM: Melibiase
YP_005377487.1	PFAM: Amino acid permease
YP_005377488.1	PFAM: Bacterial protein of unknown function (DUF885)
YP_005377489.1	PFAM: Bacterial protein of unknown function (DUF885)
YP_005377490.1	PFAM: FAD dependent oxidoreductase
YP_005377491.1	TIGRFAM: proline iminopeptidase, Neisseria-type subfamily
YP_005377492.1	PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_005377493.1	PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family
YP_005377495.1	PFAM: ATPase family associated with various cellular activities (AAA); DNA polymerase III subunits gamma and tau domain III; TIGRFAM: DNA polymerase III, subunit gamma and tau
YP_005377496.1	PFAM: Uncharacterised BCR, YbaB family COG0718; TIGRFAM: DNA-binding protein, YbaB/EbfC family
YP_005377497.1	PFAM: Toprim domain; RecR protein; TIGRFAM: recombination protein RecR
YP_005377498.1	PFAM: HIT domain
YP_005377499.1	PFAM: Outer membrane lipoprotein Slp family; TIGRFAM: outer membrane lipoprotein, Slp family
YP_005377500.1	PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488)
YP_005377501.1	PFAM: Protein of unknown function DUF58
YP_005377502.1	PFAM: ATPase family associated with various cellular activities (AAA)
YP_005377504.1	PFAM: Uncharacterized ACR, COG1399; manually curated
YP_005377505.1	PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32
YP_005377506.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_005377507.1	PFAM: Acyl transferase domain; TIGRFAM: malonyl CoA-acyl carrier protein transacylase
YP_005377508.1	PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase
YP_005377509.1	PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein
YP_005377510.1	PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: beta-ketoacyl-acyl-carrier-protein synthase II
YP_005377511.1	PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: aminodeoxychorismate synthase, component I, clade 2
YP_005377512.1	PFAM: Aminotransferase class IV; TIGRFAM: aminodeoxychorismate lyase
YP_005377513.1	PFAM: YceG-like family; TIGRFAM: conserved hypothetical protein, YceG family
YP_005377514.1	PFAM: Thymidylate kinase; TIGRFAM: thymidylate kinase
YP_005377515.1	PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: DNA polymerase III, delta' subunit
YP_005377517.1	PFAM: GlcNAc-PI de-N-acetylase
YP_005377518.1	PFAM: PilZ domain
YP_005377519.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_005377520.1	PFAM: NADH ubiquinone oxidoreductase, 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit
YP_005377521.1	PFAM: Respiratory-chain NADH dehydrogenase, 30 Kd subunit
YP_005377522.1	PFAM: Respiratory-chain NADH dehydrogenase, 49 Kd subunit; TIGRFAM: NADH dehydrogenase I, D subunit
YP_005377523.1	PFAM: Respiratory-chain NADH dehydrogenase 24 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit
YP_005377524.1	PFAM: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; Respiratory-chain NADH dehydrogenase 51 Kd subunit; SLBB domain; TIGRFAM: NADH-quinone oxidoreductase, F subunit
YP_005377525.1	PFAM: 2Fe-2S iron-sulfur cluster binding domain; Molybdopterin oxidoreductase; NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; Molydopterin dinucleotide binding domain; TIGRFAM: NADH-quinone oxidoreductase, chain G
YP_005377526.1	PFAM: NADH dehydrogenase
YP_005377527.1	TIGRFAM: NADH-quinone oxidoreductase, chain I
YP_005377528.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6
YP_005377529.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
YP_005377530.1	PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L
YP_005377531.1	PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M
YP_005377532.1	PFAM: NADH-Ubiquinone/plastoquinone (complex I), various chains; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N
YP_005377533.1	PFAM: UvrD/REP helicase; Domain of unknown function (DUF955)
YP_005377536.1	PFAM: Taurine catabolism dioxygenase TauD, TfdA family
YP_005377537.1	PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DNA polymerase III, epsilon subunit, Proteobacterial
YP_005377538.1	PFAM: XFP N-terminal domain; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; XFP C-terminal domain
YP_005377539.1	PFAM: Acetokinase family; TIGRFAM: acetate kinase
YP_005377540.1	PFAM: NmrA-like family
YP_005377541.1	PFAM: HxlR-like helix-turn-helix
YP_005377543.1	PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_005377544.1	PFAM: Uncharacterized conserved protein (DUF2075)
YP_005377546.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; Multidrug resistance protein
YP_005377547.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377548.1	PFAM: Aldo/keto reductase family
YP_005377550.1	PFAM: HD domain
YP_005377556.1	PFAM: C-5 cytosine-specific DNA methylase
YP_005377559.1	PFAM: YqaJ-like viral recombinase domain; TIGRFAM: putative phage-type endonuclease
YP_005377560.1	PFAM: RecT family; TIGRFAM: phage recombination protein Bet
YP_005377578.1	PFAM: Protein of unknown function (DUF1364)
YP_005377587.1	PFAM: Head fiber protein
YP_005377589.1	PFAM: Terminase-like family; TIGRFAM: phage uncharacterized protein (putative large terminase), C-terminal domain
YP_005377590.1	PFAM: Phage Mu protein F like protein; TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; manually curated
YP_005377592.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2213)
YP_005377594.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2184)
YP_005377600.1	PFAM: Protein of unknown function (DUF3383)
YP_005377601.1	PFAM: Protein of unknown function (DUF3277)
YP_005377603.1	PFAM: Phage-related minor tail protein
YP_005377610.1	PFAM: Protein of unknown function (DUF2612)
YP_005377614.1	PFAM: Phage integrase family; manually curated
YP_005377615.1	PFAM: ThiC family; TIGRFAM: thiamine biosynthesis protein ThiC
YP_005377616.1	PFAM: FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO
YP_005377617.1	PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS
YP_005377618.1	PFAM: Thiazole biosynthesis protein ThiG
YP_005377619.1	PFAM: Thiamine monophosphate synthase/TENI; TIGRFAM: thiamine-phosphate pyrophosphorylase
YP_005377620.1	PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase
YP_005377621.1	PFAM: Outer membrane protein (OmpH-like)
YP_005377623.1	PFAM: Protein of unknown function (DUF3574)
YP_005377625.1	PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: lactoylglutathione lyase
YP_005377626.1	PFAM: Rhomboid family
YP_005377627.1	PFAM: MOSC N-terminal beta barrel domain; MOSC domain
YP_005377628.1	PFAM: Helicase conserved C-terminal domain; RNA polymerase recycling family C-terminal; SNF2 family N-terminal domain
YP_005377629.1	PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family
YP_005377630.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005377631.1	PFAM: POT family; TIGRFAM: amino acid/peptide transporter (Peptide:H+ symporter), bacterial
YP_005377632.1	PFAM: Glycine cleavage system P-protein
YP_005377633.1	PFAM: Prokaryotic diacylglycerol kinase
YP_005377634.1	PFAM: LemA family
YP_005377635.1	PFAM: Domain of unknown function (DUF477)
YP_005377636.1	PFAM: Prolyl oligopeptidase family
YP_005377637.1	PFAM: Prolipoprotein diacylglyceryl transferase; TIGRFAM: prolipoprotein diacylglyceryl transferase
YP_005377638.1	PFAM: Protein of unknown function DUF124; TIGRFAM: TIGR00266 family protein
YP_005377639.1	PFAM: Outer membrane efflux protein
YP_005377642.1	PFAM: Secretory lipase
YP_005377643.1	PFAM: Thymidylate synthase; TIGRFAM: thymidylate synthase
YP_005377644.1	PFAM: Dihydrofolate reductase
YP_005377645.1	PFAM: Sugar (and other) transporter
YP_005377646.1	PFAM: Rieske [2Fe-2S] domain
YP_005377647.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Two-component sensor kinase N-terminal
YP_005377648.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005377650.1	PFAM: HIT domain
YP_005377651.1	PFAM: Dienelactone hydrolase family
YP_005377652.1	PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: ribosomal protein S12 methylthiotransferase RimO; radical SAM methylthiotransferase, MiaB/RimO family
YP_005377653.1	PFAM: Protein of unknown function (DUF3025)
YP_005377655.1	PFAM: Thioredoxin; TIGRFAM: thioredoxin
YP_005377656.1	PFAM: Paraquat-inducible protein A
YP_005377657.1	PFAM: Paraquat-inducible protein A
YP_005377658.1	PFAM: mce related protein
YP_005377659.1	PFAM: Protein of unknown function (DUF330)
YP_005377660.1	PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family
YP_005377661.1	PFAM: Rare lipoprotein B family
YP_005377662.1	PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit
YP_005377663.1	PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain
YP_005377664.1	PFAM: Bacterial Cytochrome Ubiquinol Oxidase
YP_005377665.1	PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB)
YP_005377667.1	PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: thiol reductant ABC exporter, CydD subunit
YP_005377668.1	PFAM: ABC transporter; TIGRFAM: thiol reductant ABC exporter, CydC subunit
YP_005377669.1	PFAM: Domain of unknown function DUF143; TIGRFAM: iojap-like ribosome-associated protein
YP_005377670.1	PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH
YP_005377671.1	PFAM: Phospholipase/Carboxylesterase
YP_005377672.1	PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; TIGRFAM: succinate CoA transferases
YP_005377673.1	PFAM: Maf-like protein; TIGRFAM: MAF protein
YP_005377674.1	PFAM: CAAX amino terminal protease family
YP_005377675.1	PFAM: CBS domain; Integral membrane protein TerC family; Transporter associated domain
YP_005377676.1	PFAM: Glycosyl transferase family 2
YP_005377677.1	PFAM: Glycosyl transferases group 1
YP_005377678.1	PFAM: Glycosyl transferase family 2
YP_005377679.1	PFAM: Glycosyl transferase family 2; TIGRFAM: L-rhamnosyltransferase
YP_005377680.1	PFAM: Polysaccharide biosynthesis protein
YP_005377681.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2236)
YP_005377682.1	PFAM: MoeZ/MoeB domain; Rhodanese-like domain; ThiF family
YP_005377683.1	PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_005377684.1	PFAM: CBS domain; IMP dehydrogenase / GMP reductase domain; TIGRFAM: inosine-5'-monophosphate dehydrogenase
YP_005377685.1	PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit
YP_005377686.1	PFAM: Enterobacterial putative membrane protein (DUF943); manually curated
YP_005377687.1	PFAM: Protein of unknown function (DUF3289); TIGRFAM: conserved hypothetical protein
YP_005377688.1	manually curated
YP_005377689.1	manually curated
YP_005377691.1	PFAM: Enterobacterial putative membrane protein (DUF943)
YP_005377692.1	PFAM: Integrase core domain
YP_005377693.1	PFAM: Protein of unknown function (DUF1153)
YP_005377694.1	PFAM: Integrase core domain; manually curated
YP_005377695.1	PFAM: Transposase DDE domain; manually curated
YP_005377698.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2252)
YP_005377699.1	PFAM: Bacterial protein of unknown function (DUF925)
YP_005377700.1	PFAM: short chain dehydrogenase
YP_005377701.1	PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_005377703.1	PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-6A synthase (deacetylating); precorrin-2 C20-methyltransferase
YP_005377704.1	PFAM: GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005377705.1	PFAM: UvrD/REP helicase; Topoisomerase DNA binding C4 zinc finger; DNA helicase IV / RNA helicase N terminal
YP_005377706.1	PFAM: Acetyltransferase (GNAT) family
YP_005377709.1	PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain; PAS fold; TIGRFAM: PAS domain S-box
YP_005377712.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005377713.1	PFAM: EamA-like transporter family
YP_005377714.1	PFAM: Amino acid permease
YP_005377715.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_005377716.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_005377717.1	PFAM: MutS domain V
YP_005377718.1	PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: NAD(P) transhydrogenase, alpha subunit
YP_005377720.1	PFAM: NAD(P) transhydrogenase beta subunit
YP_005377721.1	PFAM: Aldehyde dehydrogenase family
YP_005377722.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase
YP_005377723.1	PFAM: Purine nucleoside permease (NUP)
YP_005377724.1	PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; TIGRFAM: glucarate dehydratase
YP_005377725.1	PFAM: Major Facilitator Superfamily; TIGRFAM: D-galactonate transporter
YP_005377726.1	PFAM: Aldehyde dehydrogenase family
YP_005377727.1	PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: 5-dehydro-4-deoxyglucarate dehydratase
YP_005377728.1	PFAM: Major royal jelly protein
YP_005377729.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377730.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
YP_005377734.1	PFAM: PHB accumulation regulatory domain; PHB/PHA accumulation regulator DNA-binding domain; TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR
YP_005377735.1	PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family
YP_005377736.1	PFAM: Rickettsia 17 kDa surface antigen
YP_005377737.1	PFAM: Cell Wall Hydrolase
YP_005377738.1	PFAM: Aminomethyltransferase folate-binding domain; TIGRFAM: folate-binding protein YgfZ
YP_005377739.1	PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit
YP_005377740.1	PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein
YP_005377741.1	PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup; succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
YP_005377742.1	TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein
YP_005377743.1	PFAM: Protein of unknown function (DUF339)
YP_005377745.1	PFAM: Predicted permease; TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family
YP_005377746.1	PFAM: ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein
YP_005377747.1	PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2
YP_005377748.1	PFAM: MotA/TolQ/ExbB proton channel family
YP_005377749.1	PFAM: Biopolymer transport protein ExbD/TolR
YP_005377750.1	PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: lipid A export permease/ATP-binding protein MsbA
YP_005377751.1	PFAM: Tetraacyldisaccharide-1-P 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase
YP_005377752.1	PFAM: N-acetylmuramoyl-L-alanine amidase; LysM domain
YP_005377754.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL
YP_005377755.1	PFAM: Protein of unknown function (DUF1684)
YP_005377756.1	PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_005377757.1	PFAM: NUDIX domain
YP_005377758.1	PFAM: Rhodanese-like domain
YP_005377760.1	PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family
YP_005377761.1	PFAM: Aldo/keto reductase family
YP_005377762.1	PFAM: RibD C-terminal domain
YP_005377763.1	PFAM: Carboxymuconolactone decarboxylase family
YP_005377764.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; manually curated
YP_005377765.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: putative quinone oxidoreductase, YhdH/YhfP family
YP_005377766.1	PFAM: Possible lysine decarboxylase; TIGRFAM: TIGR00725 family protein; TIGR00730 family protein
YP_005377767.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_005377768.1	PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
YP_005377769.1	PFAM: Dehydrogenase E1 component; Transketolase, pyrimidine binding domain; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 component
YP_005377770.1	PFAM: Cupin superfamily protein
YP_005377771.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005377772.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain
YP_005377773.1	PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase
YP_005377774.1	PFAM: Lyase; Fumarase C C-terminus; TIGRFAM: fumarate hydratase, class II
YP_005377775.1	PFAM: Amidohydrolase family
YP_005377776.1	PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase
YP_005377777.1	PFAM: Response regulator receiver domain; Hpt domain
YP_005377779.1	PFAM: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA
YP_005377780.1	PFAM: CYTH domain
YP_005377781.1	PFAM: Glycosyl hydrolase family 3 N terminal domain
YP_005377782.1	PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase
YP_005377783.1	PFAM: Phosphorylase superfamily; TIGRFAM: 5'-deoxy-5'-methylthioadenosine phosphorylase
YP_005377784.1	PFAM: 'Cold-shock' DNA-binding domain
YP_005377785.1	PFAM: ABC transporter transmembrane region; ABC transporter; TIGRFAM: ABC transporter, permease/ATP-binding protein
YP_005377787.1	PFAM: Multicopper oxidase; TIGRFAM: copper-resistance protein, CopA family
YP_005377788.1	PFAM: Copper resistance protein B precursor (CopB)
YP_005377789.1	PFAM: MerR family regulatory protein; MerR, DNA binding; TIGRFAM: Cu(I)-responsive transcriptional regulator
YP_005377790.1	PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC
YP_005377791.1	PFAM: Heavy-metal-associated domain
YP_005377792.1	PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing)
YP_005377794.1	PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2; manually curated
YP_005377795.1	PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial
YP_005377797.1	PFAM: EamA-like transporter family
YP_005377798.1	PFAM: Major royal jelly protein
YP_005377799.1	PFAM: YCII-related domain
YP_005377800.1	PFAM: BolA-like protein
YP_005377801.1	PFAM: RecF/RecN/SMC N terminal domain; SMC proteins Flexible Hinge Domain; TIGRFAM: chromosome segregation protein SMC, common bacterial type
YP_005377802.1	PFAM: ZipA, C-terminal FtsZ-binding domain; TIGRFAM: cell division protein ZipA
YP_005377803.1	PFAM: Polyphosphate kinase; TIGRFAM: polyphosphate kinase 1
YP_005377804.1	PFAM: DUF218 domain
YP_005377805.1	PFAM: Exonuclease VII, large subunit; OB-fold nucleic acid binding domain; TIGRFAM: exodeoxyribonuclease VII, large subunit
YP_005377807.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_005377808.1	PFAM: Na+/H+ antiporter 1; TIGRFAM: Na+/H+ antiporter NhaA
YP_005377809.1	PFAM: Cytochrome c; Di-haem cytochrome c peroxidase
YP_005377810.1	PFAM: HpcH/HpaI aldolase/citrate lyase family; TIGRFAM: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
YP_005377811.1	PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase
YP_005377812.1	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase
YP_005377813.1	PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase; TIGRFAM: 3,4-dihydroxyphenylacetate 2,3-dioxygenase
YP_005377814.1	PFAM: Aldehyde dehydrogenase family; TIGRFAM: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
YP_005377815.1	PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit
YP_005377816.1	PFAM: Fumarylacetoacetate (FAA) hydrolase family; TIGRFAM: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit
YP_005377817.1	PFAM: AraC-like ligand binding domain; TIGRFAM: 4-hydroxyphenylacetate catabolism regulatory protein HpaA
YP_005377819.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005377820.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005377821.1	PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase
YP_005377822.1	manually curated
YP_005377823.1	PFAM: Trp repressor protein; TIGRFAM: TrpR-related protein YerC/YecD
YP_005377824.1	PFAM: HisG, C-terminal domain; ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase, C-terminal domain; ATP phosphoribosyltransferase
YP_005377825.1	PFAM: Histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase
YP_005377826.1	PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_005377827.1	PFAM: Imidazoleglycerol-phosphate dehydratase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIIA; histidinol-phosphate phosphatase family domain; histidinol-phosphatase
YP_005377828.1	PFAM: Glutamine amidotransferase class-I; TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
YP_005377829.1	PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
YP_005377830.1	PFAM: Histidine biosynthesis protein; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit
YP_005377831.1	PFAM: Phosphoribosyl-ATP pyrophosphohydrolase; Phosphoribosyl-AMP cyclohydrolase; TIGRFAM: phosphoribosyl-ATP pyrophosphohydrolase
YP_005377833.1	PFAM: Peptidase C13 family
YP_005377834.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase
YP_005377835.1	PFAM: ARD/ARD' family
YP_005377836.1	PFAM: Class II Aldolase and Adducin N-terminal domain; TIGRFAM: methylthioribulose-1-phosphate dehydratase
YP_005377837.1	PFAM: High potential iron-sulfur protein
YP_005377838.1	PFAM: SelR domain; TIGRFAM: methionine-R-sulfoxide reductase
YP_005377839.1	TIGRFAM: KamA family protein; lysine-2,3-aminomutase-related protein
YP_005377840.1	PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P
YP_005377841.1	PFAM: Amidohydrolase family
YP_005377842.1	PFAM: YCII-related domain
YP_005377843.1	PFAM: Methyltransferase domain; TIGRFAM: ubiquinone biosynthesis O-methyltransferase
YP_005377844.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; 2-phosphoglycolate phosphatase, prokaryotic
YP_005377846.1	PFAM: Uncharacterized ACR, COG1469
YP_005377847.1	PFAM: Antibiotic biosynthesis monooxygenase
YP_005377848.1	PFAM: Acetyltransferase (GNAT) family
YP_005377849.1	PFAM: Disulphide bond corrector protein DsbC; Cytochrome C biogenesis protein transmembrane region
YP_005377850.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_005377851.1	PFAM: FecR protein
YP_005377852.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain
YP_005377853.1	PFAM: Thioredoxin
YP_005377854.1	PFAM: Sulfite exporter TauE/SafE
YP_005377855.1	PFAM: PhnA protein; PhnA Zinc-Ribbon; TIGRFAM: alkylphosphonate utilization operon protein PhnA
YP_005377856.1	PFAM: Putative ammonia monooxygenase; TIGRFAM: membrane protein AbrB duplication
YP_005377857.1	PFAM: Isochorismatase family
YP_005377858.1	PFAM: Bacterial regulatory proteins, tetR family; manually curated
YP_005377862.1	PFAM: Cysteine dioxygenase type I
YP_005377863.1	PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type
YP_005377864.1	PFAM: Asparaginase
YP_005377865.1	PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative
YP_005377866.1	PFAM: Aldo/keto reductase family
YP_005377868.1	PFAM: Major Facilitator Superfamily
YP_005377869.1	PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator
YP_005377870.1	PFAM: ImpA-related N-terminal; TIGRFAM: type VI secretion-associated protein, ImpA family
YP_005377871.1	PFAM: Protein of unknown function (DUF770); TIGRFAM: type VI secretion protein, VC_A0107 family
YP_005377872.1	PFAM: Protein of unknown function (DUF877); TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family
YP_005377873.1	PFAM: Protein of unknown function (DUF796); TIGRFAM: type VI secretion system effector, Hcp1 family
YP_005377874.1	PFAM: Gene 25-like lysozyme; TIGRFAM: type VI secretion system lysozyme-related protein
YP_005377875.1	PFAM: Bacterial protein of unknown function (DUF879); TIGRFAM: type VI secretion protein, VC_A0110 family
YP_005377876.1	PFAM: Protein of unknown function (DUF1305); TIGRFAM: type VI secretion protein, VC_A0111 family
YP_005377877.1	PFAM: Phage-related baseplate assembly protein; Phage late control gene D protein (GPD); TIGRFAM: Rhs element Vgr protein; type VI secretion system Vgr family protein
YP_005377878.1	PFAM: Pentapeptide repeats (8 copies); Uncharacterized protein conserved in bacteria (DUF2169)
YP_005377879.1	PFAM: Pentapeptide repeats (8 copies)
YP_005377880.1	PFAM: Protein of unknown function (DUF3540)
YP_005377882.1	TIGRFAM: type VI secretion lipoprotein, VC_A0113 family
YP_005377883.1	PFAM: Bacterial protein of unknown function (DUF876); TIGRFAM: type VI secretion protein, VC_A0114 family
YP_005377884.1	PFAM: OmpA family; Uncharacterized protein conserved in bacteria (DUF2077); TIGRFAM: type IV / VI secretion system protein, DotU family; type VI secretion system OmpA/MotB family protein
YP_005377885.1	PFAM: Protein of unknown function (DUF1215); Intracellular multiplication and human macrophage-killing; TIGRFAM: type VI secretion protein IcmF
YP_005377887.1	PFAM: domain; Transcription elongation factor, GreA/GreB, C-term; TIGRFAM: transcription elongation factor GreB
YP_005377888.1	PFAM: Protein of unknown function (DUF1523)
YP_005377889.1	PFAM: Transglycosylase SLT domain; LysM domain
YP_005377890.1	PFAM: Phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase precursor
YP_005377891.1	PFAM: Methyltransferase small domain; TIGRFAM: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; HemK family putative methylases
YP_005377892.1	PFAM: Chorismate synthase; TIGRFAM: chorismate synthase
YP_005377893.1	PFAM: Molybdenum Cofactor Synthesis C; Radical SAM superfamily; TIGRFAM: molybdenum cofactor biosynthesis protein A, bacterial
YP_005377894.1	manually curated
YP_005377895.1	PFAM: MoeA N-terminal region (domain I and II)
YP_005377897.1	PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: oxidoreductase alpha (molybdopterin) subunit
YP_005377898.1	PFAM: FdhD/NarQ family; TIGRFAM: formate dehydrogenase family accessory protein FdhD
YP_005377899.1	PFAM: Periplasmic binding protein
YP_005377900.1	PFAM: FecCD transport family
YP_005377901.1	PFAM: ABC transporter
YP_005377902.1	PFAM: Cupin domain
YP_005377903.1	manually curated
YP_005377904.1	PFAM: short chain dehydrogenase
YP_005377905.1	PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_005377906.1	PFAM: Homoserine dehydrogenase, NAD binding domain; Domain of unknown function DUF108
YP_005377907.1	PFAM: Aldehyde dehydrogenase family
YP_005377908.1	PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_005377909.1	PFAM: Sugar (and other) transporter
YP_005377910.1	PFAM: Nitroreductase family
YP_005377911.1	PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
YP_005377912.1	PFAM: Aldehyde dehydrogenase family
YP_005377913.1	PFAM: Aldo/keto reductase family
YP_005377915.1	PFAM: Phage integrase family
YP_005377917.1	PFAM: Transposase
YP_005377919.1	PFAM: Zinc carboxypeptidase
YP_005377922.1	PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain
YP_005377923.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005377924.1	PFAM: Iron-containing alcohol dehydrogenase
YP_005377925.1	PFAM: Zinc-binding dehydrogenase
YP_005377926.1	PFAM: DJ-1/PfpI family
YP_005377927.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005377928.1	PFAM: Major Facilitator Superfamily
YP_005377930.1	PFAM: Y_Y_Y domain; GGDEF domain; Two component regulator propeller; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005377931.1	PFAM: Inhibitor of vertebrate lysozyme (Ivy)
YP_005377932.1	PFAM: D-ala D-ala ligase C-terminus; D-ala D-ala ligase N-terminus; TIGRFAM: D-alanine--D-alanine ligase
YP_005377933.1	PFAM: YaeQ protein
YP_005377934.1	PFAM: Aminotransferase class IV; TIGRFAM: branched-chain amino acid aminotransferase, group II
YP_005377935.1	PFAM: Membrane bound FAD containing D-sorbitol dehydrogenase
YP_005377936.1	PFAM: GMC oxidoreductase
YP_005377937.1	PFAM: Cytochrome c
YP_005377938.1	PFAM: Bacterial regulatory proteins, lacI family; family
YP_005377939.1	PFAM: Small Multidrug Resistance protein
YP_005377940.1	PFAM: FtsH Extracellular; Peptidase family M41; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent metalloprotease FtsH
YP_005377941.1	PFAM: FtsJ-like methyltransferase; TIGRFAM: cell division protein FtsJ
YP_005377942.1	PFAM: CRS1 / YhbY (CRM) domain; TIGRFAM: putative RNA-binding protein, YhbY family
YP_005377943.1	PFAM: Protein of unknown function (DUF498/DUF598)
YP_005377944.1	PFAM: Peptidase family M23; LysM domain
YP_005377946.1	PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_005377947.1	PFAM: Survival protein SurE; TIGRFAM: 5'/3'-nucleotidase SurE
YP_005377948.1	PFAM: Smr domain
YP_005377949.1	PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: tRNA pseudouridine synthase, TruD family
YP_005377950.1	PFAM: MgtE intracellular N domain; CBS domain; Divalent cation transporter; TIGRFAM: Mg2+ transporter (mgtE)
YP_005377951.1	PFAM: YgbB family; TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_005377952.1	PFAM: Uncharacterized protein family UPF0007; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_005377953.1	PFAM: Septum formation initiator
YP_005377954.1	PFAM: Enolase, N-terminal domain; Enolase, C-terminal TIM barrel domain; TIGRFAM: phosphopyruvate hydratase
YP_005377956.1	PFAM: DAHP synthetase I family; TIGRFAM: 3-deoxy-8-phosphooctulonate synthase
YP_005377957.1	PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase
YP_005377958.1	PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain
YP_005377959.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA topoisomerase IV, B subunit, proteobacterial
YP_005377960.1	PFAM: ATP-NAD kinase
YP_005377961.1	PFAM: Bacterial NAD-glutamate dehydrogenase
YP_005377962.1	PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_005377963.1	PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_005377964.1	PFAM: Bacterial regulatory protein, arsR family; Methyltransferase domain
YP_005377965.1	PFAM: Homocysteine S-methyltransferase
YP_005377966.1	PFAM: Pterin binding enzyme; Vitamin B12 dependent methionine synthase, activation domain; B12 binding domain; TIGRFAM: 5-methyltetrahydrofolate--homocysteine methyltransferase
YP_005377967.1	PFAM: Putative peptidoglycan binding domain; N-acetylmuramoyl-L-alanine amidase
YP_005377968.1	PFAM: Lipid A Biosynthesis N-terminal domain
YP_005377970.1	PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
YP_005377971.1	PFAM: Major Facilitator Superfamily
YP_005377972.1	PFAM: alpha/beta hydrolase fold
YP_005377973.1	PFAM: Luciferase-like monooxygenase; TIGRFAM: dimethyl sulfone monooxygenase SfnG
YP_005377974.1	PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain; TIGRFAM: phage replicative helicase, DnaB family, HK022 subfamily; replicative DNA helicase
YP_005377975.1	PFAM: Ribosomal protein L9, N-terminal domain; Ribosomal protein L9, C-terminal domain; TIGRFAM: ribosomal protein L9
YP_005377976.1	PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18
YP_005377977.1	PFAM: Ribosomal protein S6; TIGRFAM: ribosomal protein S6
YP_005377978.1	PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein
YP_005377979.1	PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: asparaginyl-tRNA synthetase
YP_005377980.1	PFAM: Maltose operon periplasmic protein precursor (MalM)
YP_005377982.1	PFAM: short chain dehydrogenase
YP_005377983.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; Multidrug resistance protein
YP_005377984.1	PFAM: Protein of unknown function (DUF3465)
YP_005377985.1	PFAM: Endoribonuclease L-PSP
YP_005377987.1	PFAM: Fusaric acid resistance protein family; TIGRFAM: integral membrane protein, YccS/YhfK family; hypothetical membrane protein, TIGR01666
YP_005377988.1	PFAM: ThiS family
YP_005377989.1	PFAM: MoaE protein
YP_005377990.1	PFAM: MoaC family; Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor biosynthesis protein MoaC; molybdenum cofactor synthesis domain
YP_005377991.1	PFAM: XdhC and CoxI family
YP_005377993.1	PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain
YP_005377994.1	PFAM: Cytochrome c
YP_005377995.1	PFAM: 2Fe-2S iron-sulfur cluster binding domain; [2Fe-2S] binding domain
YP_005377996.1	PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase
YP_005377997.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005377998.1	PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc)
YP_005377999.1	PFAM: impB/mucB/samB family
YP_005378001.1	PFAM: LexA DNA binding domain; Peptidase S24-like; TIGRFAM: SOS regulatory protein LexA
YP_005378002.1	PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain
YP_005378003.1	PFAM: Membrane transport protein
YP_005378004.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2076)
YP_005378008.1	PFAM: Peptidase family M48
YP_005378010.1	PFAM: Uncharacterized ACR, COG1469
YP_005378011.1	PFAM: Cobalamin synthesis protein cobW C-terminal domain; CobW/HypB/UreG, nucleotide-binding domain
YP_005378012.1	PFAM: Ferric uptake regulator family; manually curated
YP_005378014.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005378015.1	PFAM: Major Facilitator Superfamily
YP_005378016.1	PFAM: Aldo/keto reductase family
YP_005378017.1	PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_005378018.1	PFAM: Aldehyde dehydrogenase family
YP_005378019.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378020.1	PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain
YP_005378021.1	PFAM: AraC-like ligand binding domain
YP_005378022.1	PFAM: D-lactate dehydrogenase, membrane binding; FAD binding domain
YP_005378023.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378024.1	PFAM: short chain dehydrogenase
YP_005378025.1	PFAM: Protein of unknown function (DUF3289); TIGRFAM: conserved hypothetical protein
YP_005378026.1	PFAM: Enterobacterial putative membrane protein (DUF943)
YP_005378027.1	PFAM: Protein of unknown function (DUF1153)
YP_005378028.1	PFAM: Integrase core domain
YP_005378029.1	PFAM: Protein of unknown function (DUF1376)
YP_005378030.1	PFAM: Phage regulatory protein CII (CP76)
YP_005378032.1	PFAM: Helix-turn-helix; Peptidase S24-like; manually curated
YP_005378042.1	PFAM: YqaJ-like viral recombinase domain
YP_005378046.1	PFAM: Phage integrase family
YP_005378047.1	PFAM: Domain of unknown function (DUF927)
YP_005378052.1	PFAM: KilA-N domain
YP_005378053.1	PFAM: Prophage CP4-57 regulatory protein (AlpA)
YP_005378057.1	PFAM: Phage integrase family
YP_005378058.1	PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit
YP_005378059.1	PFAM: Triosephosphate isomerase; TIGRFAM: triosephosphate isomerase
YP_005378061.1	PFAM: 2OG-Fe(II) oxygenase superfamily
YP_005378062.1	PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; TIGRFAM: phosphoglucosamine mutase
YP_005378063.1	PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase
YP_005378064.1	PFAM: Exonuclease
YP_005378065.1	PFAM: Exonuclease; Exonuclease C-terminal
YP_005378066.1	PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein
YP_005378067.1	PFAM: Major Facilitator Superfamily; manually curated
YP_005378068.1	PFAM: Protein of unknown function (DUF1302)
YP_005378071.1	PFAM: tRNA synthetases class II (D, K and N); TIGRFAM: EF-P lysine aminoacylase GenX
YP_005378072.1	PFAM: NAD-dependent DNA ligase OB-fold domain; NAD-dependent DNA ligase adenylation domain; BRCA1 C Terminus (BRCT) domain; NAD-dependent DNA ligase C4 zinc finger domain; TIGRFAM: DNA ligase, NAD-dependent
YP_005378073.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_005378074.1	PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_005378075.1	PFAM: NUDIX domain
YP_005378076.1	PFAM: Amino acid permease; TIGRFAM: amino acid transporter
YP_005378077.1	PFAM: Amino acid permease
YP_005378078.1	PFAM: GTPase of unknown function; TIGRFAM: ribosome-associated GTPase EngA; small GTP-binding protein domain
YP_005378079.1	PFAM: PQQ enzyme repeat; TIGRFAM: outer membrane assembly lipoprotein YfgL
YP_005378080.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2133)
YP_005378082.1	TIGRFAM: type IV pilus biogenesis/stability protein PilW
YP_005378083.1	PFAM: Radical SAM superfamily; TIGRFAM: 23S rRNA m2A2503 methyltransferase
YP_005378084.1	PFAM: Nucleoside diphosphate kinase
YP_005378085.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005378086.1	PFAM: Enoyl-CoA hydratase/isomerase family; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
YP_005378087.1	PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_005378088.1	PFAM: Acyltransferase
YP_005378089.1	PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurases, SufSfamily
YP_005378090.1	PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD
YP_005378091.1	PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC
YP_005378092.1	PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB
YP_005378093.1	PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; FeS assembly SUF system regulator, gammaproteobacterial
YP_005378094.1	PFAM: Nitrogen regulatory protein P-II
YP_005378095.1	PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter
YP_005378096.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_005378097.1	PFAM: Phosphotransferase enzyme family
YP_005378098.1	PFAM: Nucleotidyl transferase
YP_005378099.1	PFAM: Nucleotidyl transferase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase
YP_005378100.1	PFAM: Polysaccharide biosynthesis protein
YP_005378101.1	PFAM: Glycosyl transferase family 4
YP_005378103.1	PFAM: Protein of unknown function (DUF1049)
YP_005378104.1	PFAM: Elongation factor P, C-terminal; Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) OB domain; TIGRFAM: translation elongation factor P; elongation factor P-like protein YeiP
YP_005378105.1	PFAM: Fusaric acid resistance protein family
YP_005378106.1	PFAM: Aminotransferase class-V; TIGRFAM: kynureninase
YP_005378107.1	PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor
YP_005378108.1	PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_005378109.1	PFAM: CheB methylesterase; Response regulator receiver domain
YP_005378110.1	PFAM: CheD; stimulates methylation of MCP proteins
YP_005378111.1	PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain
YP_005378112.1	PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_005378113.1	PFAM: CheW-like domain
YP_005378114.1	PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain; manually curated
YP_005378115.1	PFAM: Response regulator receiver domain
YP_005378118.1	PFAM: FlgN protein
YP_005378119.1	PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM; manually curated
YP_005378120.1	TIGRFAM: flagella basal body P-ring formation protein FlgA
YP_005378121.1	PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain
YP_005378122.1	PFAM: CheW-like domain; Response regulator receiver domain
YP_005378123.1	PFAM: Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgB
YP_005378124.1	PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); TIGRFAM: flagellar basal-body rod protein FlgC
YP_005378125.1	PFAM: Flagellar hook capping protein
YP_005378126.1	PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins
YP_005378127.1	PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins
YP_005378128.1	PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins; flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgG, Gram-negative bacteria
YP_005378129.1	PFAM: Flagellar L-ring protein
YP_005378130.1	PFAM: Flagellar P-ring protein
YP_005378131.1	PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; Rod binding protein; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ
YP_005378132.1	PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK
YP_005378133.1	PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3
YP_005378135.1	PFAM: Aminotransferase class-V; TIGRFAM: phosphoserine aminotransferase
YP_005378136.1	PFAM: Glycosyl transferase family 2
YP_005378137.1	PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region
YP_005378138.1	PFAM: Flagellar hook-associated protein 2 C-terminus; Flagellin hook IN motif
YP_005378139.1	PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS
YP_005378142.1	PFAM: Flagellar regulatory protein FleQ; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_005378143.1	PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE
YP_005378144.1	PFAM: Flagellar M-ring protein C-terminal; Secretory protein of YscJ/FliF family; TIGRFAM: flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
YP_005378145.1	PFAM: FliG C-terminal domain; TIGRFAM: flagellar motor switch protein FliG
YP_005378146.1	PFAM: Flagellar assembly protein FliH
YP_005378147.1	PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family; flagellar protein export ATPase FliI
YP_005378148.1	PFAM: Flagellar FliJ protein; TIGRFAM: flagellar export protein FliJ
YP_005378149.1	PFAM: Flagellar hook-length control protein FliK
YP_005378150.1	PFAM: Flagellar basal body-associated protein FliL
YP_005378151.1	PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM
YP_005378152.1	PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN
YP_005378153.1	PFAM: Flagellar biosynthesis protein, FliO; TIGRFAM: flagellar biosynthetic protein FliO
YP_005378154.1	PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP
YP_005378155.1	PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ
YP_005378156.1	PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR
YP_005378157.1	PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: flagellar biosynthetic protein FlhB
YP_005378158.1	PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA
YP_005378159.1	PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF
YP_005378160.1	PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_005378161.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family
YP_005378162.1	PFAM: Response regulator receiver domain
YP_005378163.1	PFAM: Chemotaxis phosphatase, CheZ
YP_005378164.1	PFAM: CheW-like domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Signal transducing histidine kinase, homodimeric domain; Hpt domain
YP_005378165.1	PFAM: MotA/TolQ/ExbB proton channel family
YP_005378166.1	PFAM: OmpA family
YP_005378167.1	PFAM: CheW-like domain
YP_005378168.1	PFAM: Protein of unknown function (DUF2802)
YP_005378169.1	PFAM: Aldehyde dehydrogenase family; TIGRFAM: gamma-glutamyl phosphate reductase
YP_005378170.1	PFAM: PUA domain; Amino acid kinase family; TIGRFAM: glutamate 5-kinase
YP_005378171.1	PFAM: Lyase; TIGRFAM: argininosuccinate lyase
YP_005378172.1	PFAM: Purine nucleoside permease (NUP)
YP_005378173.1	PFAM: Semialdehyde dehydrogenase, NAD binding domain; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase, common form
YP_005378175.1	PFAM: Amino acid kinase family; Protein of unknown function (DUF619); TIGRFAM: acetylglutamate kinase
YP_005378176.1	PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_005378177.1	PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase
YP_005378178.1	PFAM: OsmC-like protein
YP_005378179.1	PFAM: Putative FMN-binding domain
YP_005378180.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: ornithine carbamoyltransferase
YP_005378182.1	PFAM: Rickettsia 17 kDa surface antigen
YP_005378183.1	PFAM: tRNA synthetases class I (C) catalytic domain; DALR domain; TIGRFAM: cysteinyl-tRNA synthetase
YP_005378184.1	PFAM: Fe-S metabolism associated domain
YP_005378185.1	PFAM: DNA/RNA non-specific endonuclease
YP_005378187.1	PFAM: Protein of unknown function (DUF1470); CGNR zinc finger
YP_005378189.1	PFAM: KaiC; TIGRFAM: DNA repair protein RadA
YP_005378191.1	PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_005378192.1	PFAM: Cupin domain
YP_005378193.1	PFAM: Rhamnan synthesis protein F
YP_005378194.1	PFAM: ABC transporter
YP_005378195.1	PFAM: FecCD transport family
YP_005378196.1	PFAM: Periplasmic binding protein
YP_005378197.1	PFAM: Haemin-degrading HenS.ChuX domain
YP_005378198.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent heme/hemoglobin receptor family protein; TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein
YP_005378199.1	PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II
YP_005378200.1	PFAM: SOR/SNZ family; TIGRFAM: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1
YP_005378201.1	PFAM: SNO glutamine amidotransferase family; TIGRFAM: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2
YP_005378202.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_005378203.1	PFAM: NAD dependent epimerase/dehydratase family
YP_005378204.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378205.1	PFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: UbiD family decarboxylases
YP_005378206.1	PFAM: Flavoprotein; TIGRFAM: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases
YP_005378207.1	PFAM: Xylose isomerase-like TIM barrel
YP_005378208.1	PFAM: Major Facilitator Superfamily
YP_005378210.1	PFAM: Type I 3-dehydroquinase; TIGRFAM: 3-dehydroquinate dehydratase, type I
YP_005378211.1	PFAM: EAL domain
YP_005378212.1	PFAM: Ribosomal protein L19; TIGRFAM: ribosomal protein L19, bacterial type
YP_005378213.1	PFAM: tRNA (Guanine-1)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase
YP_005378214.1	PFAM: PRC-barrel domain; RimM N-terminal domain; TIGRFAM: 16S rRNA processing protein RimM
YP_005378215.1	PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16
YP_005378216.1	PFAM: Substrate binding domain of ABC-type glycine betaine transport system; TIGRFAM: taurine ABC transporter, periplasmic binding protein
YP_005378217.1	PFAM: ABC transporter
YP_005378218.1	PFAM: Binding-protein-dependent transport system inner membrane component
YP_005378219.1	PFAM: Taurine catabolism dioxygenase TauD, TfdA family
YP_005378220.1	PFAM: SRP54-type protein, GTPase domain; SRP54-type protein, helical bundle domain; Signal peptide binding domain; TIGRFAM: signal recognition particle protein
YP_005378223.1	PFAM: Protein of unknown function (DUF1223)
YP_005378224.1	PFAM: Disulphide bond corrector protein DsbC
YP_005378225.1	PFAM: Cytochrome C assembly protein
YP_005378226.1	PFAM: ACT domain; Formyl transferase; TIGRFAM: formyltetrahydrofolate deformylase
YP_005378227.1	PFAM: Glutathione S-transferase, C-terminal domain
YP_005378228.1	PFAM: Prokaryotic dksA/traR C4-type zinc finger; TIGRFAM: RNA polymerase-binding protein DksA
YP_005378229.1	PFAM: Domain of unknown function DUF37; TIGRFAM: conserved hypothetical protein YidD
YP_005378230.1	PFAM: Amidohydrolase family; TIGRFAM: dihydroorotase, multifunctional complex type
YP_005378231.1	PFAM: Protein of unknown function (DUF3014)
YP_005378232.1	PFAM: Protein of unknown function (DUF455)
YP_005378233.1	PFAM: Phosphoribosyl transferase domain; Glutamine amidotransferases class-II; TIGRFAM: amidophosphoribosyltransferase
YP_005378234.1	PFAM: Colicin V production protein
YP_005378235.1	PFAM: Sporulation related domain
YP_005378236.1	PFAM: Mur ligase middle domain; TIGRFAM: folylpolyglutamate synthase/dihydrofolate synthase
YP_005378238.1	PFAM: Indole-3-glycerol phosphate synthase
YP_005378239.1	PFAM: Glycosyl transferase family, a/b domain; Glycosyl transferase family, helical bundle domain; TIGRFAM: anthranilate phosphoribosyltransferase
YP_005378240.1	PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
YP_005378244.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378245.1	PFAM: Uncharacterised BCR, COG1937
YP_005378246.1	PFAM: Putative esterase; TIGRFAM: S-formylglutathione hydrolase
YP_005378247.1	TIGRFAM: DNA alkylation damage repair protein AlkB
YP_005378248.1	PFAM: Peptidase family M1
YP_005378249.1	PFAM: Sir2 family
YP_005378250.1	PFAM: Prokaryotic N-terminal methylation motif; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_005378251.1	PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_005378252.1	PFAM: Neisseria PilC protein
YP_005378255.1	TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain
YP_005378257.1	PFAM: ParA/MinD ATPase like; Anion-transporting ATPase
YP_005378258.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2147)
YP_005378259.1	PFAM: tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta chain; methionyl-tRNA synthetase
YP_005378260.1	PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_005378261.1	PFAM: Putative Fe-S cluster; TIGRFAM: electron transport complex, RnfABCDGE type, B subunit
YP_005378262.1	PFAM: HhH-GPD superfamily base excision DNA repair protein; Helix-hairpin-helix motif; TIGRFAM: endonuclease III
YP_005378264.1	PFAM: 2OG-Fe(II) oxygenase superfamily
YP_005378265.1	PFAM: Sel1 repeat
YP_005378266.1	PFAM: Putative esterase
YP_005378267.1	PFAM: Beta-lactamase; Domain of unknown function (DUF3471)
YP_005378268.1	PFAM: Uncharacterized protein family UPF0029; TIGRFAM: uncharacterized protein, YigZ family
YP_005378269.1	PFAM: PPIC-type PPIASE domain
YP_005378270.1	PFAM: Bacterial DNA-binding protein
YP_005378271.1	PFAM: ATP-dependent protease La (LON) domain; ATPase family associated with various cellular activities (AAA); Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: ATP-dependent protease La
YP_005378272.1	PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ClpX C4-type zinc finger; TIGRFAM: endopeptidase Clp ATP-binding regulatory subunit (clpX)
YP_005378273.1	PFAM: Clp protease; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP
YP_005378274.1	PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Bacterial trigger factor protein (TF); Bacterial trigger factor protein (TF) C-terminus; TIGRFAM: trigger factor
YP_005378275.1	PFAM: ABC transporter transmembrane region; ABC transporter
YP_005378276.1	PFAM: Mechanosensitive ion channel; Protein of unknown function (DUF3772)
YP_005378277.1	PFAM: NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: 6-phosphogluconate dehydrogenase (decarboxylating)
YP_005378279.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_005378280.1	PFAM: Transcriptional regulator
YP_005378282.1	PFAM: short chain dehydrogenase
YP_005378283.1	PFAM: MaoC like domain
YP_005378284.1	PFAM: Thiolase, C-terminal domain; Thiolase, N-terminal domain; TIGRFAM: acetyl-CoA acetyltransferases
YP_005378285.1	PFAM: AraC-type transcriptional regulator N-terminus
YP_005378286.1	PFAM: short chain dehydrogenase
YP_005378287.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378289.1	PFAM: Acyltransferase
YP_005378290.1	PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family
YP_005378291.1	PFAM: Glutaredoxin; TIGRFAM: monothiol glutaredoxin, Grx4 family
YP_005378292.1	PFAM: Iron/manganese superoxide dismutases, alpha-hairpin domain; Iron/manganese superoxide dismutases, C-terminal domain
YP_005378293.1	PFAM: ATP-grasp domain; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurK protein
YP_005378294.1	PFAM: AIR carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, PurE protein
YP_005378295.1	PFAM: Trm112p-like protein
YP_005378296.1	PFAM: Quinolinate phosphoribosyl transferase, C-terminal domain; Quinolinate phosphoribosyl transferase, N-terminal domain; TIGRFAM: nicotinate-nucleotide pyrophosphorylase
YP_005378297.1	PFAM: Protein of unknown function (DUF3301)
YP_005378298.1	PFAM: Stringent starvation protein B
YP_005378299.1	PFAM: Cytochrome C1 family
YP_005378300.1	PFAM: Cytochrome b(N-terminal)/b6/petB; Cytochrome b(C-terminal)/b6/petD
YP_005378301.1	PFAM: Rieske [2Fe-2S] domain; Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit
YP_005378302.1	PFAM: Trypsin
YP_005378303.1	PFAM: Transglycosylase SLT domain
YP_005378304.1	PFAM: TRAM domain; Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; radical SAM methylthiotransferase, MiaB/RimO family
YP_005378305.1	PFAM: PhoH-like protein
YP_005378306.1	PFAM: Uncharacterized protein family UPF0054; TIGRFAM: metalloprotein, YbeY/UPF0054 family
YP_005378307.1	PFAM: CBS domain; Transporter associated domain
YP_005378309.1	PFAM: CorA-like Mg2+ transporter protein; TIGRFAM: magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)
YP_005378310.1	PFAM: Prolyl oligopeptidase family; WD40-like Beta Propeller Repeat
YP_005378311.1	PFAM: Prokaryotic N-terminal methylation motif; Pilin (bacterial filament); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_005378314.1	PFAM: Phosphoglycerate mutase family
YP_005378315.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_005378316.1	PFAM: EAL domain; GGDEF domain; Bacterial signalling protein N terminal repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378317.1	PFAM: Protein of unknown function (DUF3667)
YP_005378319.1	PFAM: CrcB-like protein; TIGRFAM: protein CrcB
YP_005378322.1	PFAM: Protein of unknown function (DUF2778)
YP_005378323.1	PFAM: AraC-type transcriptional regulator N-terminus
YP_005378324.1	PFAM: short chain dehydrogenase
YP_005378325.1	PFAM: short chain dehydrogenase
YP_005378326.1	PFAM: Flavin reductase like domain
YP_005378327.1	PFAM: HxlR-like helix-turn-helix
YP_005378328.1	PFAM: NmrA-like family
YP_005378329.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378330.1	PFAM: NmrA-like family
YP_005378331.1	manually curated
YP_005378332.1	PFAM: Acetyltransferase (GNAT) family
YP_005378333.1	PFAM: Cytochrome c
YP_005378334.1	PFAM: GMC oxidoreductase
YP_005378335.1	PFAM: Membrane bound FAD containing D-sorbitol dehydrogenase
YP_005378336.1	PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; PQQ enzyme repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
YP_005378338.1	PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
YP_005378341.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_005378342.1	PFAM: Cytochrome C biogenesis protein transmembrane region
YP_005378343.1	PFAM: AhpC/TSA family
YP_005378345.1	PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein
YP_005378346.1	PFAM: Polypeptide deformylase
YP_005378347.1	PFAM: Initiator Replication protein
YP_005378348.1	PFAM: EamA-like transporter family
YP_005378349.1	PFAM: Streptococcal 67 kDa myosin-cross-reactive antigen like family
YP_005378350.1	PFAM: Uncharacterised BCR, YnfA/UPF0060 family
YP_005378352.1	PFAM: Peptidase family M13
YP_005378355.1	PFAM: Seryl-tRNA synthetase N-terminal domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: seryl-tRNA synthetase
YP_005378356.1	PFAM: MgsA AAA+ ATPase C terminal; ATPase family associated with various cellular activities (AAA)
YP_005378357.1	PFAM: His Kinase A (phosphoacceptor) domain
YP_005378358.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005378359.1	PFAM: GDSL-like Lipase/Acylhydrolase
YP_005378360.1	PFAM: ABC transporter
YP_005378361.1	PFAM: Predicted permease
YP_005378362.1	PFAM: Hsp70 protein
YP_005378363.1	PFAM: Citrate transporter
YP_005378366.1	PFAM: MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein
YP_005378367.1	PFAM: Inositol monophosphatase family; TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase, bacterial
YP_005378368.1	PFAM: NUDIX domain
YP_005378369.1	PFAM: Inositol monophosphatase family; TIGRFAM: histidinol-phosphate phosphatase HisN, inositol monophosphatase family
YP_005378370.1	PFAM: Bacterial type II secretion system protein N
YP_005378371.1	PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase
YP_005378372.1	PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family
YP_005378373.1	PFAM: Prokaryotic glutathione synthetase, N-terminal domain; Prokaryotic glutathione synthetase, ATP-grasp domain; TIGRFAM: glutathione synthetase, prokaryotic
YP_005378374.1	PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_005378376.1	PFAM: Uncharacterized ACR, COG1678
YP_005378377.1	PFAM: Uncharacterised protein family (UPF0081); TIGRFAM: RNAse H-fold protein YqgF
YP_005378378.1	PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase
YP_005378380.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_005378381.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378382.1	PFAM: Inositol monophosphatase family
YP_005378383.1	PFAM: SpoU rRNA Methylase family; TIGRFAM: RNA methyltransferase, TrmH family, group 1
YP_005378384.1	PFAM: CBS domain; Domain of unknown function DUF21; Transporter associated domain
YP_005378386.1	PFAM: Phosphate transporter family
YP_005378387.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
YP_005378388.1	PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain
YP_005378389.1	PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Cytochrome c; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family
YP_005378390.1	PFAM: Cytochrome c
YP_005378391.1	PFAM: PhoU domain; TIGRFAM: phosphate transport system regulatory protein PhoU
YP_005378392.1	PFAM: ABC transporter; TIGRFAM: phosphate ABC transporter, ATP-binding protein
YP_005378393.1	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstA
YP_005378394.1	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC
YP_005378395.1	TIGRFAM: phosphate ABC transporter, phosphate-binding protein
YP_005378396.1	PFAM: Exonuclease; TIGRFAM: ribonuclease T
YP_005378399.1	PFAM: Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; tRNA-guanine transglycosylase, queuosine-34-forming
YP_005378400.1	PFAM: Cellulose synthase operon protein C C-terminus (BCSC_C); Tetratricopeptide repeat
YP_005378401.1	PFAM: Glycosyl hydrolases family 8
YP_005378402.1	PFAM: Bacterial cellulose synthase subunit
YP_005378403.1	PFAM: Glycosyl transferase family 2; PilZ domain; Cellulose synthase; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); manually curated
YP_005378404.1	PFAM: Cellulose synthase subunit D
YP_005378405.1	PFAM: Glycosyl hydrolases family 8
YP_005378406.1	PFAM: Glycosyl hydrolases family 8
YP_005378407.1	PFAM: Protein of unknown function (DUF2819); TIGRFAM: cellulose biosynthesis protein BcsE; manually curated
YP_005378408.1	PFAM: Protein of unknown function (DUF2636)
YP_005378409.1	PFAM: Protein of unknown function (DUF3260); TIGRFAM: cellulose synthase operon protein YhjU
YP_005378410.1	PFAM: Protein of unknown function (DUF2629)
YP_005378411.1	PFAM: YhjQ protein; TIGRFAM: cellulose synthase operon protein YhjQ
YP_005378412.1	PFAM: Glycosyl transferase family 2; PilZ domain; Cellulose synthase; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming)
YP_005378413.1	PFAM: Bacterial cellulose synthase subunit
YP_005378414.1	PFAM: Cellulose synthase operon protein C C-terminus (BCSC_C)
YP_005378415.1	PFAM: Queuosine biosynthesis protein; TIGRFAM: S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_005378416.1	PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family
YP_005378417.1	PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_005378418.1	PFAM: Aminotransferase class-III
YP_005378419.1	PFAM: psiF repeat
YP_005378420.1	PFAM: Phosphoribosyl transferase domain; TIGRFAM: uracil phosphoribosyltransferase
YP_005378421.1	PFAM: alpha/beta hydrolase fold; TIGRFAM: proline iminopeptidase, Neisseria-type subfamily
YP_005378422.1	PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain
YP_005378423.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase
YP_005378424.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: ModE molybdate transport repressor domain
YP_005378425.1	PFAM: Aconitate B N-terminal domain; Aconitase family (aconitate hydratase); Aconitate hydratase 2 N-terminus; TIGRFAM: aconitate hydratase 2
YP_005378426.1	PFAM: Aconitase C-terminal domain; Aconitase family (aconitate hydratase); TIGRFAM: aconitate hydratase 1
YP_005378427.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_005378428.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378429.1	PFAM: DoxX
YP_005378430.1	PFAM: Putative esterase
YP_005378431.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent siderophore receptor
YP_005378433.1	PFAM: Major Facilitator Superfamily
YP_005378434.1	PFAM: Serine carboxypeptidase
YP_005378435.1	PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_005378436.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378437.1	PFAM: MutS family domain IV; MutS domain II; MutS domain V; MutS domain I; MutS domain III; TIGRFAM: DNA mismatch repair protein MutS
YP_005378438.1	manually curated
YP_005378439.1	PFAM: Uracil DNA glycosylase superfamily
YP_005378440.1	PFAM: tRNA synthetases class I (W and Y); TIGRFAM: tryptophanyl-tRNA synthetase
YP_005378441.1	PFAM: Arginase family; TIGRFAM: arginase
YP_005378442.1	PFAM: VWA domain containing CoxE-like protein
YP_005378443.1	PFAM: ATPase family associated with various cellular activities (AAA)
YP_005378444.1	PFAM: Predicted membrane protein (DUF2127)
YP_005378445.1	PFAM: EamA-like transporter family
YP_005378446.1	PFAM: Glycosyl transferase family 2
YP_005378448.1	PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; TIGRFAM: phosphoribosylformylglycinamidine synthase, single chain form
YP_005378449.1	PFAM: Disulfide bond isomerase protein N-terminus
YP_005378452.1	PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family
YP_005378453.1	PFAM: RDD family
YP_005378454.1	PFAM: PHB de-polymerase C-terminus; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular
YP_005378455.1	PFAM: Beta-eliminating lyase
YP_005378456.1	PFAM: Demethylmenaquinone methyltransferase; TIGRFAM: RraA famliy
YP_005378457.1	PFAM: Predicted permease YjgP/YjgQ family
YP_005378458.1	PFAM: Predicted permease YjgP/YjgQ family
YP_005378459.1	PFAM: Cytosol aminopeptidase family, catalytic domain; Cytosol aminopeptidase family, N-terminal domain
YP_005378460.1	PFAM: DNA polymerase III chi subunit, HolC
YP_005378461.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005378462.1	PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase
YP_005378463.1	PFAM: MatE; TIGRFAM: putative efflux protein, MATE family
YP_005378464.1	PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
YP_005378465.1	PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain
YP_005378466.1	PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_005378467.1	PFAM: Elongation factor Tu domain 2; Elongation factor Tu GTP binding domain; TIGRFAM: small GTP-binding protein domain; peptide chain release factor 3
YP_005378468.1	PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain
YP_005378469.1	PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain
YP_005378470.1	PFAM: CheB methylesterase
YP_005378471.1	PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378472.1	PFAM: Dihydrouridine synthase (Dus); TIGRFAM: tRNA dihydrouridine synthase A
YP_005378474.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005378475.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
YP_005378477.1	PFAM: HTH domain; Biotin protein ligase C terminal domain; Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region; BirA biotin operon repressor domain
YP_005378478.1	PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III
YP_005378480.1	PFAM: AMP-binding enzyme
YP_005378481.1	PFAM: ScpA/B protein
YP_005378482.1	PFAM: Putative transcriptional regulators (Ypuh-like); TIGRFAM: segregation and condensation protein B
YP_005378483.1	PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase
YP_005378484.1	PFAM: ArsC family; TIGRFAM: arsenate reductase (glutaredoxin)
YP_005378485.1	PFAM: Carbon-nitrogen hydrolase
YP_005378486.1	PFAM: Aminotransferase class I and II
YP_005378487.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378489.1	PFAM: MerR family regulatory protein
YP_005378490.1	PFAM: Bacterial DNA-binding protein; TIGRFAM: integration host factor, alpha subunit
YP_005378491.1	PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial
YP_005378492.1	PFAM: tRNA synthetases class II core domain (F); Aminoacyl tRNA synthetase class II, N-terminal domain; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit
YP_005378493.1	PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20
YP_005378494.1	PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35
YP_005378495.1	PFAM: Translation initiation factor IF-3, C-terminal domain; Translation initiation factor IF-3, N-terminal domain; TIGRFAM: translation initiation factor IF-3
YP_005378496.1	PFAM: Anticodon binding domain; Threonyl and Alanyl tRNA synthetase second additional domain; tRNA synthetase class II core domain (G, H, P, S and T); TGS domain; TIGRFAM: threonyl-tRNA synthetase
YP_005378497.1	PFAM: NAD dependent epimerase/dehydratase family
YP_005378498.1	PFAM: short chain dehydrogenase
YP_005378499.1	PFAM: Uncharacterised protein family (UPF0093); TIGRFAM: TIGR00701 family protein
YP_005378500.1	PFAM: 2-keto-3-deoxy-galactonokinase
YP_005378501.1	PFAM: KDPG and KHG aldolase; TIGRFAM: Entner-Doudoroff aldolase
YP_005378504.1	PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family
YP_005378505.1	PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain; Tar ligand binding domain homologue
YP_005378506.1	PFAM: SPFH domain / Band 7 family
YP_005378507.1	PFAM: Uncharacterized protein family UPF0057
YP_005378509.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378510.1	PFAM: Bacterial regulatory proteins, tetR family; manually curated
YP_005378511.1	PFAM: 2Fe-2S iron-sulfur cluster binding domain; Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain
YP_005378512.1	PFAM: Fatty acid desaturase
YP_005378514.1	PFAM: Integrase core domain
YP_005378515.1	PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit
YP_005378516.1	PFAM: Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain
YP_005378517.1	PFAM: Shikimate dehydrogenase substrate binding domain; TIGRFAM: shikimate 5-dehydrogenase
YP_005378518.1	PFAM: Acetyltransferase (GNAT) family
YP_005378519.1	PFAM: SapC
YP_005378520.1	PFAM: HNH endonuclease
YP_005378521.1	PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: 1-deoxy-D-xylulose-5-phosphate synthase
YP_005378522.1	PFAM: MMPL family; TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN
YP_005378523.1	PFAM: Methyltransferase small domain; TIGRFAM: HemK family putative methylases; protein-(glutamine-N5) methyltransferase, release factor-specific
YP_005378524.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378525.1	PFAM: Phosphoribosyl transferase domain; TIGRFAM: adenine phosphoribosyltransferase
YP_005378527.1	PFAM: tRNA synthetases class I (E and Q), catalytic domain; tRNA synthetases class I (E and Q), anti-codon binding domain; TIGRFAM: glutaminyl-tRNA synthetase
YP_005378528.1	PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region
YP_005378529.1	PFAM: SNARE associated Golgi protein
YP_005378530.1	PFAM: Adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthase
YP_005378531.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2065)
YP_005378532.1	PFAM: SPFH domain / Band 7 family; TIGRFAM: HflC protein
YP_005378533.1	PFAM: Bacterial membrane protein N terminal; SPFH domain / Band 7 family; TIGRFAM: HflK protein
YP_005378534.1	PFAM: SMP-30/Gluconolaconase/LRE-like region
YP_005378535.1	PFAM: Domain of unknown function (DUF336)
YP_005378536.1	PFAM: EAL domain; GGDEF domain; Bacterial signalling protein N terminal repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378537.1	PFAM: Stage II sporulation protein E (SpoIIE)
YP_005378538.1	PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family; DNA polymerase III, epsilon subunit, Proteobacterial
YP_005378539.1	PFAM: RNase H
YP_005378540.1	PFAM: Methyltransferase domain
YP_005378541.1	PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: hydroxyacylglutathione hydrolase
YP_005378542.1	PFAM: Transglycosylase SLT domain; LysM domain
YP_005378543.1	PFAM: short chain dehydrogenase
YP_005378544.1	PFAM: NADPH-dependent FMN reductase
YP_005378545.1	PFAM: HxlR-like helix-turn-helix
YP_005378546.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2058)
YP_005378547.1	PFAM: SlyX
YP_005378548.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase
YP_005378549.1	PFAM: NlpC/P60 family
YP_005378550.1	PFAM: Alanine racemase, N-terminal domain; TIGRFAM: pyridoxal phosphate enzyme, YggS family
YP_005378551.1	PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain
YP_005378552.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region
YP_005378555.1	PFAM: Zinc carboxypeptidase
YP_005378556.1	PFAM: Peptidase family M13
YP_005378557.1	PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_005378558.1	PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT
YP_005378559.1	PFAM: NADP oxidoreductase coenzyme F420-dependent; TIGRFAM: pyrroline-5-carboxylate reductase
YP_005378560.1	PFAM: YGGT family
YP_005378561.1	PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3
YP_005378562.1	PFAM: RNB domain; Ribonuclease B OB domain; S1 RNA binding domain; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonucleases
YP_005378563.1	PFAM: Protein of unknown function (DUF1153)
YP_005378564.1	PFAM: Integrase core domain
YP_005378565.1	PFAM: HNH endonuclease; Protein of unknown function DUF262
YP_005378566.1	PFAM: FKBP-type peptidyl-prolyl cis-trans isomerase; Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
YP_005378567.1	PFAM: Sodium/hydrogen exchanger family
YP_005378569.1	PFAM: Protein of unknown function (DUF1249)
YP_005378570.1	PFAM: Domain of unknown function (DUF299); manually curated
YP_005378571.1	PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; Pyruvate phosphate dikinase, PEP/pyruvate binding domain; TIGRFAM: phosphoenolpyruvate synthase
YP_005378573.1	PFAM: Aspartate decarboxylase; TIGRFAM: L-aspartate-alpha-decarboxylase
YP_005378574.1	PFAM: Pantoate-beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase
YP_005378575.1	PFAM: Ketopantoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_005378576.1	PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_005378577.1	PFAM: Poly A polymerase head domain; TIGRFAM: poly(A) polymerase
YP_005378578.1	PFAM: Domain of unknown function (DUF3470); 4Fe-4S binding domain
YP_005378580.1	PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: dihydrodipicolinate synthase
YP_005378582.1	PFAM: AhpC/TSA family
YP_005378583.1	PFAM: PhoH-like protein
YP_005378584.1	PFAM: Aspartyl/Asparaginyl beta-hydroxylase
YP_005378586.1	PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NAD-dependent, mitochondrial type; isopropylmalate/isohomocitrate dehydrogenases
YP_005378587.1	PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: alkylhydroperoxidase AhpD family core domain
YP_005378588.1	PFAM: Glutaredoxin; TIGRFAM: Glutaredoxin, GrxC family
YP_005378589.1	PFAM: Peptidase family M48
YP_005378590.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB
YP_005378591.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: phosphate regulon sensor kinase PhoR
YP_005378592.1	PFAM: Ppx/GppA phosphatase family; TIGRFAM: exopolyphosphatase
YP_005378593.1	PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
YP_005378594.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase
YP_005378595.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378596.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378597.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378598.1	PFAM: 3'-5' exonuclease; HRDC domain; TIGRFAM: ribonuclease D
YP_005378601.1	PFAM: Major royal jelly protein
YP_005378602.1	PFAM: Glycerate kinase family; TIGRFAM: glycerate kinase
YP_005378603.1	PFAM: GntP family permease; Na+/H+ antiporter family
YP_005378604.1	PFAM: Putative sugar diacid recognition
YP_005378605.1	PFAM: Aldo/keto reductase family
YP_005378607.1	PFAM: NAD dependent epimerase/dehydratase family; manually curated
YP_005378608.1	PFAM: Probable cobalt transporter subunit (CbtA)
YP_005378610.1	PFAM: Phosphoglycerate mutase family
YP_005378612.1	PFAM: Domain of unknown function (DUF3315)
YP_005378613.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; TIGRFAM: dihydrolipoamide dehydrogenase
YP_005378614.1	PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_005378615.1	PFAM: Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain
YP_005378616.1	PFAM: Dehydrogenase E1 component
YP_005378617.1	PFAM: Bacterial regulatory proteins, luxR family
YP_005378619.1	PFAM: ABC transporter
YP_005378621.1	PFAM: Protein of unknown function (DUF3289); TIGRFAM: conserved hypothetical protein
YP_005378622.1	PFAM: Enterobacterial putative membrane protein (DUF943); manually curated
YP_005378625.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378627.1	PFAM: NADH:flavin oxidoreductase / NADH oxidase family
YP_005378628.1	PFAM: Pirin C-terminal cupin domain; Pirin
YP_005378630.1	PFAM: TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_005378631.1	PFAM: Phage integrase family
YP_005378632.1	PFAM: LytB protein; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)
YP_005378633.1	PFAM: Signal peptidase (SPase) II; TIGRFAM: lipoprotein signal peptidase
YP_005378634.1	PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Zinc finger found in FPG and IleRS; TIGRFAM: isoleucyl-tRNA synthetase
YP_005378635.1	PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase
YP_005378636.1	PFAM: MviN-like protein; TIGRFAM: integral membrane protein MviN
YP_005378637.1	PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20
YP_005378638.1	PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain
YP_005378639.1	PFAM: Pyridoxal-dependent decarboxylase conserved domain
YP_005378641.1	PFAM: Siderophore biosynthesis protein domain
YP_005378642.1	PFAM: Ferric iron reductase FhuF-like transporter; IucA / IucC family
YP_005378643.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent siderophore receptor
YP_005378644.1	PFAM: GTPase of unknown function; GTP1/OBG; TIGRFAM: Obg family GTPase CgtA
YP_005378645.1	PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27
YP_005378646.1	PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21
YP_005378647.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2059)
YP_005378648.1	PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit
YP_005378649.1	PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
YP_005378650.1	PFAM: Bacterial extracellular solute-binding proteins, family 3
YP_005378651.1	PFAM: ABC transporter
YP_005378652.1	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_005378653.1	PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
YP_005378654.1	PFAM: short chain dehydrogenase
YP_005378655.1	PFAM: LamB/YcsF family
YP_005378656.1	PFAM: Biotin-requiring enzyme
YP_005378657.1	PFAM: Allophanate hydrolase subunit 2; TIGRFAM: biotin-dependent carboxylase uncharacterized domain
YP_005378658.1	PFAM: Allophanate hydrolase subunit 1; TIGRFAM: TIGR00370 family protein
YP_005378659.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005378660.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_005378661.1	PFAM: Aminotransferase class I and II
YP_005378662.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378663.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005378664.1	PFAM: Alpha-acetolactate decarboxylase; TIGRFAM: alpha-acetolactate decarboxylase
YP_005378665.1	PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, catabolic
YP_005378666.1	PFAM: Cysteine-rich domain
YP_005378667.1	PFAM: Uncharacterised ACR, YkgG family COG1556; TIGRFAM: iron-sulfur cluster-binding protein
YP_005378668.1	PFAM: Uncharacterised ACR, YkgG family COG1556
YP_005378669.1	PFAM: Protein of unknown function (DUF2501)
YP_005378670.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005378671.1	PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Domain of unknown function (DUF1974); Acyl-CoA dehydrogenase, N-terminal domain
YP_005378672.1	PFAM: Major Facilitator Superfamily; TIGRFAM: Multidrug resistance protein
YP_005378674.1	PFAM: Oxidoreductase FAD-binding domain; Oxidoreductase NAD-binding domain
YP_005378676.1	PFAM: Protein of unknown function (DUF3298)
YP_005378677.1	PFAM: Protein of unknown function (DUF456)
YP_005378678.1	PFAM: Haemolysin-III related; TIGRFAM: channel protein, hemolysin III family
YP_005378679.1	PFAM: Bestrophin
YP_005378680.1	PFAM: Carbonic anhydrase
YP_005378682.1	PFAM: Phospholipase D Active site motif
YP_005378683.1	PFAM: Major Facilitator Superfamily
YP_005378685.1	PFAM: Isochorismatase family
YP_005378686.1	PFAM: FAD binding domain of DNA photolyase; DNA photolyase
YP_005378687.1	PFAM: GGDEF domain; MASE2 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378688.1	PFAM: D12 class N6 adenine-specific DNA methyltransferase; TIGRFAM: DNA adenine methylase (dam)
YP_005378690.1	PFAM: Cupin domain
YP_005378691.1	PFAM: Anthranilate synthase component I, N terminal region; chorismate binding enzyme; TIGRFAM: anthranilate synthase component I, non-proteobacterial lineages
YP_005378692.1	PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005378693.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; TIGRFAM: proteobacterial dedicated sortase system response regulator
YP_005378695.1	PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase
YP_005378696.1	PFAM: DnaJ domain; Tellurite resistance protein TerB
YP_005378697.1	PFAM: Cytochrome c
YP_005378698.1	PFAM: SAICAR synthetase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase
YP_005378699.1	PFAM: Small Multidrug Resistance protein
YP_005378701.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378702.1	PFAM: Sulfotransferase domain
YP_005378703.1	PFAM: cAMP phosphodiesterases class-II
YP_005378704.1	PFAM: Amino acid permease
YP_005378705.1	PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
YP_005378706.1	PFAM: Mannitol dehydrogenase C-terminal domain; Mannitol dehydrogenase Rossmann domain
YP_005378707.1	PFAM: impB/mucB/samB family C-terminal; IMS family HHH motif; impB/mucB/samB family
YP_005378708.1	PFAM: HD domain
YP_005378709.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; Biotin-requiring enzyme; TIGRFAM: dihydrolipoamide dehydrogenase
YP_005378710.1	PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form
YP_005378711.1	PFAM: Mechanosensitive ion channel
YP_005378712.1	PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein
YP_005378718.1	PFAM: Bacterial protein of unknown function (DUF894)
YP_005378719.1	PFAM: Thioredoxin
YP_005378720.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain
YP_005378722.1	PFAM: Transketolase, thiamine diphosphate binding domain; TIGRFAM: pyruvate dehydrogenase E1 component, homodimeric type
YP_005378723.1	PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain
YP_005378724.1	PFAM: Protein of unknown function, DUF258; TIGRFAM: ribosome small subunit-dependent GTPase A
YP_005378725.1	PFAM: Aminotransferase class I and II
YP_005378726.1	PFAM: GDSL-like Lipase/Acylhydrolase
YP_005378728.1	PFAM: Glutaredoxin; Rhodanese-like domain; TIGRFAM: monothiol glutaredoxin, Grx4 family
YP_005378729.1	PFAM: short chain dehydrogenase
YP_005378730.1	PFAM: ABC transporter
YP_005378731.1	PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type; signal peptide peptidase SppA, 67K type
YP_005378732.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005378733.1	PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005378734.1	PFAM: GTPase of unknown function; TIGRFAM: ribosome biogenesis GTP-binding protein YsxC/EngB
YP_005378735.1	PFAM: Cytochrome c
YP_005378736.1	PFAM: DSBA-like thioredoxin domain
YP_005378737.1	PFAM: DSBA-like thioredoxin domain
YP_005378738.1	PFAM: Endonuclease/Exonuclease/phosphatase family
YP_005378739.1	PFAM: Transglycosylase SLT domain
YP_005378740.1	PFAM: RmlD substrate binding domain; NAD dependent epimerase/dehydratase family
YP_005378741.1	PFAM: Poly A polymerase head domain
YP_005378742.1	PFAM: Sulfatase
YP_005378743.1	PFAM: Uncharacterized ACR, COG1565
YP_005378744.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005378746.1	PFAM: short chain dehydrogenase; TIGRFAM: pteridine reductase
YP_005378747.1	PFAM: Proteasome subunit
YP_005378748.1	PFAM: Bacterial domain of unknown function (DUF403)
YP_005378749.1	PFAM: Domain of unknown function (DUF404); Domain of unknown function (DUF407)
YP_005378750.1	PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_005378751.1	PFAM: Mechanosensitive ion channel
YP_005378752.1	PFAM: Dihydroneopterin aldolase; TIGRFAM: dihydroneopterin aldolase; FolB domain
YP_005378753.1	PFAM: Glycoprotease family; TIGRFAM: putative glycoprotease GCP; metallohydrolase, glycoprotease/Kae1 family
YP_005378754.1	PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21
YP_005378755.1	PFAM: Yqey-like protein
YP_005378756.1	PFAM: Protein of unknown function (DUF1328)
YP_005378757.1	PFAM: Toprim domain; CHC2 zinc finger; DNA primase catalytic core, N-terminal domain; DNA primase DnaG DnaB-binding; DnaB-helicase binding domain of primase; TIGRFAM: DNA primase, catalytic core
YP_005378758.1	PFAM: Sodium/hydrogen exchanger family; TIGRFAM: Na+/H+ antiporter, bacterial form
YP_005378760.1	PFAM: UbiA prenyltransferase family; TIGRFAM: protoheme IX farnesyltransferase
YP_005378761.1	PFAM: Cytochrome oxidase assembly protein
YP_005378763.1	PFAM: SURF1 family
YP_005378764.1	PFAM: Protein of unknown function (DUF2909)
YP_005378765.1	PFAM: Cytochrome c oxidase subunit III
YP_005378767.1	PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I
YP_005378768.1	PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome C oxidase subunit II, transmembrane domain; TIGRFAM: cytochrome c oxidase, subunit II
YP_005378769.1	PFAM: Integral membrane protein (DUF2244)
YP_005378770.1	PFAM: Proline dehydrogenase; Aldehyde dehydrogenase family; TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)
YP_005378771.1	PFAM: YcgL domain
YP_005378773.1	PFAM: Glycosyltransferase family 9 (heptosyltransferase)
YP_005378774.1	PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family
YP_005378776.1	PFAM: Fumarylacetoacetate (FAA) hydrolase family
YP_005378777.1	PFAM: Large-conductance mechanosensitive channel, MscL; TIGRFAM: large conductance mechanosensitive channel protein
YP_005378779.1	PFAM: Surface antigen variable number repeat; Surface antigen
YP_005378780.1	PFAM: Family of unknown function (DUF490)
YP_005378781.1	PFAM: Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_005378783.1	PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Amino acid kinase family; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase; aspartate kinase
YP_005378786.1	PFAM: von Willebrand factor type A domain; Collagen triple helix repeat (20 copies); Tetratricopeptide repeat
YP_005378787.1	PFAM: von Willebrand factor type A domain
YP_005378789.1	PFAM: Protein of unknown function DUF58
YP_005378790.1	PFAM: ATPase family associated with various cellular activities (AAA)
YP_005378791.1	PFAM: Predicted permease
YP_005378792.1	PFAM: Predicted permease
YP_005378794.1	PFAM: Rhomboid family
YP_005378796.1	PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: type IV pilus secretin (or competence protein) PilQ
YP_005378797.1	PFAM: Pilus assembly protein, PilP
YP_005378798.1	PFAM: Pilus assembly protein, PilO
YP_005378799.1	PFAM: Fimbrial assembly protein (PilN)
YP_005378800.1	PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM
YP_005378801.1	PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family
YP_005378803.1	PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type)
YP_005378804.1	PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31
YP_005378805.1	PFAM: Inosine-uridine preferring nucleoside hydrolase
YP_005378806.1	PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG
YP_005378807.1	PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative
YP_005378808.1	PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region
YP_005378809.1	PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF404); Domain of unknown function (DUF407)
YP_005378812.1	PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378813.1	PFAM: Hsp33 protein
YP_005378814.1	PFAM: Transglycosylase; TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase
YP_005378815.1	PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase)
YP_005378816.1	PFAM: short chain dehydrogenase
YP_005378817.1	PFAM: Glycosyl transferase family 2
YP_005378818.1	PFAM: Major Facilitator Superfamily
YP_005378820.1	PFAM: Met Apo-repressor, MetJ
YP_005378821.1	PFAM: Glycine cleavage system P-protein
YP_005378822.1	PFAM: Glycine cleavage H-protein; TIGRFAM: glycine cleavage system H protein
YP_005378823.1	PFAM: Aminomethyltransferase folate-binding domain; Glycine cleavage T-protein C-terminal barrel domain; TIGRFAM: glycine cleavage system T protein
YP_005378824.1	PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein; manually curated
YP_005378825.1	PFAM: ABC transporter
YP_005378826.1	PFAM: mce related protein
YP_005378827.1	PFAM: Protein of unknown function (DUF330)
YP_005378828.1	PFAM: Electron transfer flavoprotein-ubiquinone oxidoreductase; Thi4 family
YP_005378829.1	PFAM: Glycosyl transferases group 1
YP_005378830.1	PFAM: Glycosyl transferase family 2
YP_005378831.1	PFAM: Capsule polysaccharide biosynthesis protein
YP_005378832.1	PFAM: Glycosyl transferases group 1
YP_005378833.1	PFAM: Polysaccharide biosynthesis/export protein
YP_005378834.1	PFAM: Glycosyl transferases group 1
YP_005378835.1	PFAM: WavE lipopolysaccharide synthesis
YP_005378838.1	PFAM: Phosphotransferase enzyme family
YP_005378839.1	TIGRFAM: capsule biosynthesis phosphatase
YP_005378840.1	PFAM: WavE lipopolysaccharide synthesis
YP_005378842.1	PFAM: ABC-2 type transporter
YP_005378843.1	TIGRFAM: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family
YP_005378844.1	PFAM: Capsule polysaccharide biosynthesis protein
YP_005378845.1	PFAM: short chain dehydrogenase
YP_005378846.1	PFAM: Sulfatase
YP_005378847.1	PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Alcohol dehydrogenase GroES-like domain; Beta-ketoacyl synthase, N-terminal domain; Zinc-binding dehydrogenase; Beta-ketoacyl synthase, C-terminal domain
YP_005378848.1	PFAM: UDP-3-O-acyl N-acetylglycosamine deacetylase; TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase
YP_005378849.1	PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase
YP_005378850.1	PFAM: Acetyltransferase (GNAT) family
YP_005378851.1	PFAM: Electron transfer flavoprotein domain
YP_005378852.1	PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain
YP_005378854.1	PFAM: ABC-2 type transporter
YP_005378855.1	PFAM: Cys/Met metabolism PLP-dependent enzyme
YP_005378856.1	PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase
YP_005378857.1	PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form
YP_005378858.1	PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase
YP_005378859.1	PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase
YP_005378860.1	PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
YP_005378861.1	PFAM: Helix-turn-helix
YP_005378862.1	PFAM: SEC-C motif; manually curated
YP_005378863.1	TIGRFAM: RND family efflux transporter, MFP subunit
YP_005378864.1	PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium)
YP_005378865.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005378866.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378867.1	PFAM: Domain of unknown function DUF
YP_005378868.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_005378869.1	PFAM: Nucleoside recognition
YP_005378870.1	PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)
YP_005378871.1	PFAM: RES domain
YP_005378872.1	PFAM: Protein of unknown function (DUF2384); TIGRFAM: putative toxin-antitoxin system antitoxin component, TIGR02293 family
YP_005378873.1	PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C
YP_005378874.1	PFAM: Alpha-macro-globulin thiol-ester bond-forming region; Alpha-2-macroglobulin family; MG2 domain; Alpha-2-macroglobulin family N-terminal region; Alpha-2-macroglobulin MG1 domain
YP_005378875.1	PFAM: Domain of unknown function (DUF333)
YP_005378876.1	PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_005378877.1	PFAM: Copper resistance protein D
YP_005378878.1	PFAM: Copper resistance protein CopC
YP_005378879.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378880.1	PFAM: ExsB; TIGRFAM: queuosine biosynthesis protein QueC
YP_005378881.1	PFAM: Radical SAM superfamily
YP_005378882.1	TIGRFAM: tol-pal system protein YbgF
YP_005378883.1	PFAM: OmpA family; TIGRFAM: peptidoglycan-associated lipoprotein
YP_005378884.1	PFAM: WD40-like Beta Propeller Repeat; TolB amino-terminal domain; TIGRFAM: tol-pal system beta propeller repeat protein TolB
YP_005378885.1	TIGRFAM: TolA protein
YP_005378886.1	PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TolR protein
YP_005378887.1	PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: TolQ protein
YP_005378888.1	PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; tol-pal system-associated acyl-CoA thioesterase
YP_005378889.1	PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit
YP_005378890.1	PFAM: K+ potassium transporter; TIGRFAM: potassium uptake protein
YP_005378891.1	PFAM: RuvA, C-terminal domain; RuvA N terminal domain; TIGRFAM: Holliday junction DNA helicase, RuvA subunit
YP_005378892.1	PFAM: Crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC
YP_005378893.1	PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family
YP_005378895.1	PFAM: GAD domain; tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: aspartyl-tRNA synthetase, bacterial type
YP_005378896.1	PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family
YP_005378897.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain
YP_005378898.1	PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase
YP_005378899.1	PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB
YP_005378900.1	PFAM: Trehalose-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB
YP_005378901.1	PFAM: Glycosyl hydrolases family 15
YP_005378902.1	PFAM: Glycosyltransferase family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]
YP_005378903.1	PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family
YP_005378904.1	PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase, RluA family
YP_005378905.1	TIGRFAM: outer membrane assembly lipoprotein YfiO
YP_005378907.1	PFAM: short chain dehydrogenase
YP_005378908.1	PFAM: Bacterial regulatory proteins, tetR family; manually curated
YP_005378909.1	PFAM: NAD synthase; Carbon-nitrogen hydrolase; TIGRFAM: NAD+ synthetase
YP_005378910.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378911.1	PFAM: Cupin domain
YP_005378912.1	PFAM: CoA binding domain; CoA-ligase; TIGRFAM: succinyl-CoA synthetase, alpha subunit
YP_005378913.1	PFAM: CoA-ligase; ATP-grasp domain; TIGRFAM: succinyl-CoA synthetase, beta subunit
YP_005378914.1	PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005378915.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box
YP_005378916.1	PFAM: Major Facilitator Superfamily; TIGRFAM: glucose/galactose transporter; L-fucose:H+ symporter permease
YP_005378917.1	PFAM: pfkB family carbohydrate kinase
YP_005378918.1	PFAM: Bacterial Cytochrome Ubiquinol Oxidase
YP_005378919.1	PFAM: Cytochrome oxidase subunit II; TIGRFAM: cytochrome d oxidase, subunit II (cydB)
YP_005378920.1	PFAM: Protein of unknown function (DUF2474)
YP_005378921.1	PFAM: Uncharacterised protein family UPF0047; TIGRFAM: secondary thiamine-phosphate synthase enzyme
YP_005378922.1	PFAM: Pyridoxamine 5'-phosphate oxidase; Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; TIGRFAM: pyridoxamine-phosphate oxidase
YP_005378924.1	PFAM: NAD dependent epimerase/dehydratase family; manually curated
YP_005378925.1	PFAM: Shikimate kinase; manually curated
YP_005378926.1	PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase
YP_005378927.1	PFAM: WGR domain
YP_005378928.1	PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: uroporphyrinogen decarboxylase
YP_005378929.1	PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; Valyl tRNA synthetase tRNA binding arm; TIGRFAM: valyl-tRNA synthetase
YP_005378930.1	PFAM: GlnD PII-uridylyltransferase; Glutamate-ammonia ligase adenylyltransferase
YP_005378932.1	PFAM: Flavodoxin; FAD binding domain; Oxidoreductase NAD-binding domain; TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha-component
YP_005378933.1	PFAM: Nitrite and sulphite reductase 4Fe-4S domain; Nitrite/Sulfite reductase ferredoxin-like half domain; TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component
YP_005378934.1	PFAM: Phosphoadenosine phosphosulfate reductase family; TIGRFAM: phosophoadenylyl-sulfate reductase (thioredoxin); phosphoadenosine phosphosulfate reductase, thioredoxin dependent
YP_005378935.1	PFAM: ATP-sulfurylase; Adenylylsulphate kinase; TIGRFAM: adenylylsulfate kinase (apsK); ATP sulphurylase
YP_005378936.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005378937.1	PFAM: Sirohaem synthase dimerisation region; Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase, N-terminal domain
YP_005378938.1	PFAM: TonB-dependent Receptor Plug Domain
YP_005378940.1	PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, N-terminal domain; TIGRFAM: sulfur acquisition oxidoreductase, SfnB family
YP_005378941.1	PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain; TIGRFAM: sulfur acquisition oxidoreductase, SfnB family
YP_005378942.1	PFAM: Luciferase-like monooxygenase; TIGRFAM: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family
YP_005378944.1	PFAM: TCP-1/cpn60 chaperonin family; TIGRFAM: chaperonin GroL
YP_005378945.1	PFAM: Chaperonin 10 Kd subunit
YP_005378946.1	PFAM: Disulphide bond corrector protein DsbC; Cytochrome C biogenesis protein transmembrane region
YP_005378947.1	PFAM: AhpC/TSA family
YP_005378948.1	PFAM: Dehydroquinase class II; TIGRFAM: 3-dehydroquinate dehydratase, type II
YP_005378949.1	PFAM: Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_005378950.1	PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit
YP_005378951.1	PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase
YP_005378952.1	PFAM: Protein of unknown function (DUF3426); TIGRFAM: MJ0042 family finger-like domain
YP_005378953.1	PFAM: Bacterial regulatory protein, Fis family
YP_005378954.1	PFAM: AICARFT/IMPCHase bienzyme; MGS-like domain; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
YP_005378955.1	PFAM: Sodium Bile acid symporter family
YP_005378956.1	PFAM: Major Facilitator Superfamily; TIGRFAM: polyol permease family
YP_005378957.1	PFAM: EamA-like transporter family
YP_005378958.1	PFAM: Protein of unknown function (DUF2782)
YP_005378959.1	PFAM: 5'-3' exonuclease, C-terminal SAM fold; 3'-5' exonuclease; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I
YP_005378961.1	PFAM: UvrD/REP helicase; TIGRFAM: DNA helicase II
YP_005378962.1	PFAM: Bacterial protein of unknown function (DUF939)
YP_005378963.1	PFAM: TonB-dependent Receptor Plug Domain
YP_005378965.1	PFAM: Luciferase-like monooxygenase; TIGRFAM: luciferase family oxidoreductase, group 1
YP_005378966.1	PFAM: HemY protein N-terminus
YP_005378968.1	PFAM: Uroporphyrinogen-III synthase HemD
YP_005378969.1	PFAM: Putative thioesterase (yiiD_Cterm); TIGRFAM: thioesterase domain, putative
YP_005378970.1	PFAM: Rhodanese-like domain
YP_005378971.1	PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal
YP_005378972.1	PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain
YP_005378974.1	PFAM: Helix-turn-helix; TIGRFAM: addiction module antidote protein, HigA family
YP_005378975.1	PFAM: NADPH-dependent FMN reductase
YP_005378976.1	PFAM: Aminotransferase class I and II
YP_005378977.1	PFAM: RmuC family
YP_005378978.1	PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family
YP_005378979.1	PFAM: Phosphoribulokinase / Uridine kinase family
YP_005378980.1	PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component
YP_005378981.1	PFAM: pfkB family carbohydrate kinase; TIGRFAM: 1-phosphofructokinase; hexose kinase, 1-phosphofructokinase family
YP_005378982.1	PFAM: PEP-utilising enzyme, TIM barrel domain; PEP-utilising enzyme, mobile domain; PTS HPr component phosphorylation site; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, N-terminal; TIGRFAM: Phosphotransferase System HPr (HPr) Family; phosphoenolpyruvate-protein phosphotransferase
YP_005378983.1	PFAM: Bacterial regulatory proteins, lacI family; family; TIGRFAM: D-fructose-responsive transcription factor
YP_005378984.1	PFAM: Subtilase family; Pro-kumamolisin, activation domain
YP_005378985.1	PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I
YP_005378988.1	PFAM: RecF/RecN/SMC N terminal domain
YP_005378989.1	PFAM: Domain of unknown function (DUF1993)
YP_005378990.1	PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: cysteine synthase A; cysteine synthases
YP_005378991.1	PFAM: DEAD_2; DEAD/DEAH box helicase
YP_005378992.1	PFAM: Peptidase family M1
YP_005378993.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005378994.1	PFAM: Oxidoreductase FAD-binding domain; Globin; Oxidoreductase NAD-binding domain
YP_005378995.1	PFAM: GAF domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain
YP_005378996.1	TIGRFAM: serine transporter
YP_005378997.1	PFAM: Dopa 4,5-dioxygenase family
YP_005378998.1	PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative
YP_005378999.1	PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; TIGRFAM: HipA N-terminal domain
YP_005379000.1	PFAM: Helix-turn-helix
YP_005379001.1	PFAM: SIS domain; Glutamine amidotransferases class-II; TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_005379002.1	PFAM: CBS domain; Pyridoxal-phosphate dependent enzyme; TIGRFAM: cystathionine beta-synthase
YP_005379003.1	PFAM: Protein of unknown function (DUF465)
YP_005379004.1	PFAM: Phosphoglycerate kinase
YP_005379005.1	PFAM: Polyprenyl synthetase
YP_005379006.1	PFAM: Major Facilitator Superfamily
YP_005379007.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005379008.1	PFAM: CutA1 divalent ion tolerance protein
YP_005379009.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase small subunit family protein, proteobacterial
YP_005379010.1	PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II
YP_005379011.1	PFAM: Peptidase family M23
YP_005379012.1	PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc)
YP_005379013.1	PFAM: Protein of unknown function (DUF3300)
YP_005379014.1	PFAM: Sec-independent protein translocase protein (TatC); TIGRFAM: Twin arginine targeting (Tat) protein translocase TatC
YP_005379015.1	PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase TatB
YP_005379016.1	PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family
YP_005379017.1	PFAM: Family of unknown function (DUF500)
YP_005379019.1	PFAM: Ferrochelatase; TIGRFAM: ferrochelatase
YP_005379020.1	PFAM: Fimbrial protein
YP_005379021.1	PFAM: Fimbrial Usher protein
YP_005379022.1	PFAM: Gram-negative pili assembly chaperone, C-terminal domain; Gram-negative pili assembly chaperone, N-terminal domain
YP_005379023.1	PFAM: Fimbrial protein
YP_005379025.1	PFAM: ABC transporter
YP_005379027.1	PFAM: ABC transporter
YP_005379028.1	PFAM: ABC-2 type transporter
YP_005379029.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase
YP_005379030.1	PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase
YP_005379031.1	PFAM: Glutamine cyclotransferase
YP_005379032.1	PFAM: Aspartyl/Asparaginyl beta-hydroxylase
YP_005379033.1	PFAM: Serine carboxypeptidase
YP_005379034.1	PFAM: Serine carboxypeptidase
YP_005379035.1	PFAM: Phosphoesterase family; TIGRFAM: acid phosphatase, Burkholderia-type
YP_005379036.1	PFAM: Leukotriene A4 hydrolase, C-terminal; Peptidase family M1
YP_005379038.1	PFAM: PilZ domain
YP_005379039.1	PFAM: Protein of unknown function DUF45
YP_005379040.1	PFAM: Putative exonuclease, RdgC
YP_005379041.1	PFAM: Phytanoyl-CoA dioxygenase (PhyH)
YP_005379042.1	PFAM: haloacid dehalogenase-like hydrolase
YP_005379044.1	TIGRFAM: PEP-CTERM protein sorting domain; LPXTG-motif cell wall anchor domain
YP_005379045.1	PFAM: OHCU decarboxylase; TIGRFAM: OHCU decarboxylase
YP_005379046.1	PFAM: Polysaccharide deacetylase; TIGRFAM: putative urate catabolism protein
YP_005379047.1	PFAM: Rieske [2Fe-2S] domain
YP_005379049.1	PFAM: Permease family; TIGRFAM: uracil-xanthine permease; xanthine permease
YP_005379050.1	PFAM: HIUase/Transthyretin family; TIGRFAM: hydroxyisourate hydrolase
YP_005379051.1	PFAM: Cytochrome c; Protein of unknown function (DUF989)
YP_005379052.1	PFAM: Allantoicase repeat; TIGRFAM: allantoicase
YP_005379053.1	PFAM: Ureidoglycolate hydrolase
YP_005379054.1	PFAM: Carbohydrate-selective porin, OprB family
YP_005379055.1	PFAM: Membrane bound FAD containing D-sorbitol dehydrogenase
YP_005379056.1	PFAM: Cytochrome c
YP_005379057.1	PFAM: GMC oxidoreductase; FAD dependent oxidoreductase
YP_005379058.1	PFAM: Pathogenicity locus
YP_005379059.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005379060.1	PFAM: NAD dependent epimerase/dehydratase family
YP_005379061.1	PFAM: Protein of unknown function (DUF2946)
YP_005379062.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent copper receptor
YP_005379067.1	PFAM: Prophage CP4-57 regulatory protein (AlpA)
YP_005379068.1	PFAM: KilA-N domain
YP_005379073.1	PFAM: Domain of unknown function (DUF927)
YP_005379074.1	PFAM: Phage integrase family
YP_005379075.1	PFAM: NUDIX domain
YP_005379076.1	PFAM: BFD-like [2Fe-2S] binding domain
YP_005379077.1	PFAM: Ferritin-like domain; TIGRFAM: bacterioferritin
YP_005379078.1	PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein
YP_005379079.1	PFAM: NADH pyrophosphatase zinc ribbon domain; NUDIX domain; NADH pyrophosphatase-like rudimentary NUDIX domain
YP_005379080.1	PFAM: CobD/Cbib protein
YP_005379081.1	PFAM: Aldo/keto reductase family
YP_005379082.1	PFAM: Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase
YP_005379083.1	PFAM: H-NS histone family
YP_005379084.1	PFAM: AMP-binding enzyme
YP_005379085.1	PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein
YP_005379086.1	PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase I, bacterial
YP_005379087.1	PFAM: IclR helix-turn-helix domain; DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA
YP_005379088.1	PFAM: LysM domain
YP_005379089.1	PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase
YP_005379090.1	PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase
YP_005379091.1	PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB
YP_005379092.1	PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase
YP_005379093.1	PFAM: Glycosyl transferases group 1
YP_005379094.1	PFAM: Glycosyl transferase family 2
YP_005379095.1	PFAM: Pirin C-terminal cupin domain; Pirin
YP_005379096.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005379097.1	PFAM: Bacterial transferase hexapeptide (three repeats)
YP_005379098.1	PFAM: Peptidase family M3
YP_005379099.1	PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth)
YP_005379100.1	PFAM: Uncharacterised protein family (UPF0149); TIGRFAM: yecA family protein
YP_005379101.1	PFAM: Shikimate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family
YP_005379102.1	PFAM: rRNA small subunit methyltransferase G; TIGRFAM: 16S rRNA (guanine(527)-N(7))-methyltransferase GidB
YP_005379103.1	PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain
YP_005379104.1	PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins
YP_005379105.1	PFAM: Glycosyl transferase family 2
YP_005379106.1	PFAM: Patatin-like phospholipase
YP_005379107.1	PFAM: HTH domain
YP_005379108.1	PFAM: Protein of unknown function, DUF481
YP_005379109.1	PFAM: Aminotransferase class I and II; manually curated
YP_005379110.1	PFAM: PP-loop family
YP_005379111.1	PFAM: Uncharacterized protein conserved in bacteria (DUF2076)
YP_005379112.1	PFAM: HlyD family secretion protein
YP_005379113.1	PFAM: Protein of unknown function (DUF1656)
YP_005379114.1	PFAM: Fusaric acid resistance protein family
YP_005379117.1	PFAM: Peptidase M16 inactive domain; Insulinase (Peptidase family M16)
YP_005379118.1	PFAM: SpoU rRNA Methylase family; TIGRFAM: rRNA methylase, putative, group 2
YP_005379119.1	PFAM: SCP-2 sterol transfer family
YP_005379120.1	PFAM: ABC1 family; TIGRFAM: 2-polyprenylphenol 6-hydroxylase
YP_005379121.1	PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family
YP_005379122.1	PFAM: RF-1 domain
YP_005379123.1	PFAM: Protein of unknown function (DUF962)
YP_005379124.1	PFAM: Aldehyde dehydrogenase family
YP_005379125.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_005379126.1	PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Secretin and TonB N terminus short domain
YP_005379128.1	PFAM: Protein of unknown function (DUF560)
YP_005379129.1	PFAM: MotA/TolQ/ExbB proton channel family; TIGRFAM: tonB-system energizer ExbB
YP_005379130.1	PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TonB system transport protein ExbD, group 1
YP_005379131.1	PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_005379132.1	PFAM: MgtC family
YP_005379133.1	PFAM: short chain dehydrogenase
YP_005379134.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005379141.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005379142.1	PFAM: short chain dehydrogenase
YP_005379144.1	PFAM: ABC transporter transmembrane region; ABC transporter
YP_005379145.1	PFAM: ABC transporter transmembrane region; ABC transporter
YP_005379146.1	PFAM: Major royal jelly protein
YP_005379147.1	PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family
YP_005379148.1	PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase; TIGRFAM: zinc-binding alcohol dehydrogenase family protein
YP_005379149.1	PFAM: Major royal jelly protein
YP_005379151.1	TIGRFAM: putative addiction module antidote protein, CC2985 family
YP_005379152.1	PFAM: Plasmid stabilisation system protein
YP_005379155.1	PFAM: Putative methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase
YP_005379156.1	PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain
YP_005379157.1	PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit
YP_005379158.1	PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_005379159.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005379160.1	PFAM: Cell division protein ZapA
YP_005379162.1	PFAM: Delta-aminolevulinic acid dehydratase
YP_005379163.1	PFAM: Glucokinase; TIGRFAM: glucokinase, proteobacterial type
YP_005379164.1	PFAM: FAD binding domain; FAD linked oxidases, C-terminal domain; TIGRFAM: glycolate oxidase, subunit GlcD
YP_005379165.1	PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain
YP_005379166.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
YP_005379167.1	PFAM: Preprotein translocase subunit SecB; TIGRFAM: protein-export chaperone SecB
YP_005379168.1	PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28
YP_005379169.1	PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type
YP_005379170.1	PFAM: Major Facilitator Superfamily
YP_005379171.1	PFAM: Alanine racemase, C-terminal domain; Alanine racemase, N-terminal domain; TIGRFAM: alanine racemase
YP_005379172.1	PFAM: FAD dependent oxidoreductase
YP_005379173.1	PFAM: MarR family; AsnC family
YP_005379174.1	PFAM: Voltage gated chloride channel
YP_005379175.1	PFAM: OsmC-like protein; TIGRFAM: peroxiredoxin, Ohr subfamily
YP_005379176.1	PFAM: MarR family
YP_005379178.1	PFAM: short chain dehydrogenase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase, putative
YP_005379179.1	PFAM: M61 glycyl aminopeptidase
YP_005379180.1	PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain
YP_005379181.1	PFAM: Phosphoesterase family; Domain of unknown function (DUF756); TIGRFAM: phospholipase C, phosphocholine-specific, Pseudomonas-type
YP_005379182.1	PFAM: Flavodoxin; Oxidoreductase NAD-binding domain
YP_005379183.1	PFAM: Amino acid permease
YP_005379184.1	PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor
YP_005379185.1	PFAM: Ferritin-like domain
YP_005379186.1	PFAM: Glycerophosphoryl diester phosphodiesterase family
YP_005379187.1	PFAM: Amidohydrolase family; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase
YP_005379188.1	PFAM: 5'-nucleotidase, C-terminal domain; Calcineurin-like phosphoesterase; TIGRFAM: 2',3'-cyclic-nucleotide 2'-phosphodiesterase
YP_005379189.1	PFAM: Bacterial regulatory proteins, tetR family
YP_005379190.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005379191.1	PFAM: HlyD family secretion protein; TIGRFAM: efflux pump membrane protein (multidrug resistance protein A)
YP_005379192.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily
YP_005379193.1	PFAM: Proteobacterial lipase chaperone protein
YP_005379194.1	PFAM: alpha/beta hydrolase fold
YP_005379195.1	PFAM: alpha/beta hydrolase fold
YP_005379197.1	PFAM: Homoserine dehydrogenase, NAD binding domain; Homoserine dehydrogenase
YP_005379198.1	PFAM: GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: homoserine kinase
YP_005379199.1	PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: threonine synthase
YP_005379200.1	PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; TIGRFAM: 2-isopropylmalate synthase, bacterial type
YP_005379201.1	PFAM: Aconitase family (aconitate hydratase); TIGRFAM: 3-isopropylmalate dehydratase, large subunit
YP_005379202.1	PFAM: Aconitase C-terminal domain; TIGRFAM: 3-isopropylmalate dehydratase, small subunit
YP_005379203.1	PFAM: Isocitrate/isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase
YP_005379204.1	PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase
YP_005379205.1	PFAM: Thiamine pyrophosphate enzyme, central domain; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type
YP_005379206.1	PFAM: ACT domain; Small subunit of acetolactate synthase; TIGRFAM: acetolactate synthase, small subunit
YP_005379207.1	PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain
YP_005379208.1	PFAM: Glycosyl transferase family 2; TIGRFAM: hopene-associated glycosyltransferase HpnB
YP_005379209.1	PFAM: Radical SAM superfamily; Domain of unknown function (DUF3463); TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH
YP_005379210.1	PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1
YP_005379211.1	PFAM: Glycosyl transferase family 2; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI
YP_005379212.1	PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ
YP_005379213.1	PFAM: YdjC-like protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK
YP_005379214.1	PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: putative membrane protein
YP_005379215.1	PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: hopanoid-associated sugar epimerase
YP_005379216.1	PFAM: Squalene/phytoene synthase
YP_005379217.1	PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase
YP_005379218.1	PFAM: Phosphorylase superfamily
YP_005379219.1	PFAM: Polyprenyl synthetase
YP_005379220.1	PFAM: Carbohydrate-selective porin, OprB family
YP_005379221.1	PFAM: Carbohydrate-selective porin, OprB family
YP_005379222.1	PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: alkyl hydroperoxide reductase, F subunit
YP_005379223.1	PFAM: C-terminal domain of 1-Cys peroxiredoxin; AhpC/TSA family; TIGRFAM: peroxiredoxin
YP_005379224.1	PFAM: RbsD / FucU transport protein family
YP_005379225.1	PFAM: pfkB family carbohydrate kinase; TIGRFAM: ribokinase
YP_005379226.1	PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_005379228.1	PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_005379229.1	PFAM: Thioesterase superfamily
YP_005379230.1	PFAM: GTP cyclohydrolase I; TIGRFAM: 7-cyano-7-deazaguanine reductase
YP_005379232.1	PFAM: short chain dehydrogenase; TIGRFAM: acetoin reductases
YP_005379233.1	PFAM: Fatty acid desaturase
YP_005379234.1	PFAM: Formamidopyrimidine-DNA glycosylase H2TH domain; Formamidopyrimidine-DNA glycosylase N-terminal domain; Zinc finger found in FPG and IleRS; TIGRFAM: formamidopyrimidine-DNA glycosylase (fpg)
YP_005379236.1	PFAM: Thymidine kinase
YP_005379237.1	PFAM: UvrD/REP helicase; TIGRFAM: ATP-dependent DNA helicase Rep
YP_005379238.1	PFAM: Domain of unknown function DUF20
YP_005379240.1	PFAM: Acyltransferase; TIGRFAM: glycerol-3-phosphate O-acyltransferase
YP_005379241.1	PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase
YP_005379242.1	PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases
YP_005379243.1	PFAM: Acyltransferase family
YP_005379245.1	PFAM: Spermine/spermidine synthase; TIGRFAM: spermidine synthase
YP_005379246.1	PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: arginine decarboxylase, biosynthetic
YP_005379247.1	PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family
YP_005379248.1	PFAM: Sugar (and other) transporter; TIGRFAM: MFS transporter, sugar porter (SP) family
YP_005379249.1	PFAM: Fusaric acid resistance protein family
YP_005379250.1	PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; Multidrug resistance protein
YP_005379251.1	PFAM: HlyD family secretion protein; TIGRFAM: efflux pump membrane protein (multidrug resistance protein A)
YP_005379252.1	PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
YP_005379253.1	PFAM: MarR family
YP_005379254.1	PFAM: Prolyl oligopeptidase family; Dipeptidyl peptidase IV (DPP IV) N-terminal region
YP_005379255.1	PFAM: Phospholipase/Carboxylesterase
YP_005379256.1	PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase
YP_005379257.1	PFAM: Phosphoglycerate mutase family; TIGRFAM: phosphohistidine phosphatase SixA
YP_005379259.1	PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain
YP_005379261.1	PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: nitrogen regulation protein NR(I)
YP_005379262.1	PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; manually curated
YP_005379263.1	PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I
YP_005379264.1	PFAM: Bacterial protein of unknown function (Gcw_chp); TIGRFAM: conserved hypothetical protein, proteobacterial
YP_005379265.1	PFAM: Rhomboid family
YP_005379266.1	PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain
YP_005379267.1	PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
YP_005379268.1	PFAM: dUTPase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase (dut)
YP_005379269.1	PFAM: DNA / pantothenate metabolism flavoprotein; Flavoprotein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic
YP_005379270.1	PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc
YP_005379271.1	PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase
YP_005379272.1	PFAM: Sporulation related domain
YP_005379274.1	PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family
YP_005379276.1	PFAM: MatE; TIGRFAM: putative efflux protein, MATE family
YP_005379277.1	PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
YP_005379278.1	PFAM: Protein of unknown function (DUF1481)
YP_005379279.1	PFAM: Glycosyl transferase family 2
YP_005379280.1	PFAM: Periplasmic glucan biosynthesis protein, MdoG
YP_005379281.1	PFAM: short chain dehydrogenase
YP_005379282.1	PFAM: Catalytic LigB subunit of aromatic ring-opening dioxygenase
YP_005379283.1	PFAM: Phospholipase/Carboxylesterase
YP_005379285.1	PFAM: Protein phosphatase 2C
YP_005379286.1	PFAM: ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor, TIGR02999 family
YP_005379287.1	PFAM: Protein kinase domain
YP_005379291.1	PFAM: GTPase of unknown function; GTP-binding protein TrmE N-terminus; TIGRFAM: small GTP-binding protein domain; tRNA modification GTPase TrmE
YP_005379292.1	PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain
YP_005379293.1	PFAM: Ribonuclease P; TIGRFAM: ribonuclease P protein component, eubacterial
YP_005379294.1	PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; IMG reference gene:2509819362_SP