-- dump date 20111121_012151 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 402612000001 SEQ_END SEQ_END NC_009613.1 2861988 2861988 DR NC_009613.1; contig end 2861988..2861988 Flavobacterium psychrophilum JIP02/86 YP_001294941.1 CDS FP0001 NC_009613.1 575 3907 D Similar to chromosome segregation ATPases Cytophaga hutchinsonii. Probable transmembrane protein; putative chromosome segregation ATPase 575..3907 Flavobacterium psychrophilum JIP02/86 5298635 YP_001294942.1 CDS FP0002 NC_009613.1 3900 4322 D Similar to predicted metal-dependent hydrolase COG0319; hypothetical protein 3900..4322 Flavobacterium psychrophilum JIP02/86 5299484 YP_001294943.1 CDS gidA NC_009613.1 4533 6404 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 4533..6404 Flavobacterium psychrophilum JIP02/86 5300664 YP_001294944.1 CDS FP0004 NC_009613.1 6568 7416 D SAM-dependent methyltransferase 6568..7416 Flavobacterium psychrophilum JIP02/86 5299774 YP_001294945.1 CDS FP0005 NC_009613.1 7680 8243 D Weakly similar to outer membrane protein (OmpH- like) pfam03938; OmpH family outer membrane protein 7680..8243 Flavobacterium psychrophilum JIP02/86 5300665 YP_001294946.1 CDS FP0006 NC_009613.1 9077 11557 D Some similarities with PKD repeats protein of Cytophaga hutchinsonii; hypothetical protein 9077..11557 Flavobacterium psychrophilum JIP02/86 5300666 YP_001294947.1 CDS FP0007 NC_009613.1 11900 14173 D Similar to putative helicase of Porphyromonas gingivalis and Cytophaga hutchinsonii; helicase 11900..14173 Flavobacterium psychrophilum JIP02/86 5300667 YP_001294948.1 CDS FP0008 NC_009613.1 15024 15575 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(15024..15575) Flavobacterium psychrophilum JIP02/86 5300821 YP_001294949.1 CDS FP0009 NC_009613.1 15631 16140 R Similar to cAMP-binding proteins - catabolite geneactivator and regulatory subunit of cAMP-dependent protein kinase COG0664; cAMP-binding protein complement(15631..16140) Flavobacterium psychrophilum JIP02/86 5300822 YP_001294950.1 CDS FP0010 NC_009613.1 16177 16560 R Probable transmembrane protein; hypothetical protein complement(16177..16560) Flavobacterium psychrophilum JIP02/86 5300823 YP_001294951.1 CDS holB NC_009613.1 16691 17839 R Similar to HolB ATPase involved in DNA replicationCOG0470; DNA polymerase III, delta prime subunit complement(16691..17839) Flavobacterium psychrophilum JIP02/86 5300824 YP_001294952.1 CDS FP0012 NC_009613.1 18268 18705 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 18268..18705 Flavobacterium psychrophilum JIP02/86 5300129 YP_001294953.1 CDS FP0013 NC_009613.1 18740 20032 D Similar to proteins of unknown function of the CFBphylum; hypothetical protein 18740..20032 Flavobacterium psychrophilum JIP02/86 5299087 YP_001294954.1 CDS sprC NC_009613.1 20165 21598 D Putative adhesin precursor likely involved in gliding motility; putative adhesin precursor SprC 20165..21598 Flavobacterium psychrophilum JIP02/86 5299088 YP_001294955.1 CDS sprD NC_009613.1 21600 25460 D Putative cell surface protein likely involved in gliding motility; putative cell surface protein precursor SprD 21600..25460 Flavobacterium psychrophilum JIP02/86 5300591 YP_001294956.1 CDS sprB NC_009613.1 25572 35549 D Putative adhesin precursor likely involved in gliding motility; putative adhesin precursor SprB 25572..35549 Flavobacterium psychrophilum JIP02/86 5300592 YP_001294957.1 CDS FP0017 NC_009613.1 35596 36567 D Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein 35596..36567 Flavobacterium psychrophilum JIP02/86 5300590 YP_001294958.1 CDS pgk NC_009613.1 36696 37883 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 36696..37883 Flavobacterium psychrophilum JIP02/86 5299089 YP_001294959.1 CDS mltD NC_009613.1 37989 40085 D Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division (By similarity); membrane-bound lytic murein transglycosylase D precursor 37989..40085 Flavobacterium psychrophilum JIP02/86 5298999 YP_001294960.1 CDS elaA NC_009613.1 40142 40591 D Similar to predicted acyltransferase ElaA COG2153; ElaA protein 40142..40591 Flavobacterium psychrophilum JIP02/86 5300110 YP_001294961.1 CDS FP0021 NC_009613.1 40588 41406 R Similar to outer membrane protein and related peptidoglycan-associated (lipo)proteins COG2885; OmpA family outer membrane protein complement(40588..41406) Flavobacterium psychrophilum JIP02/86 5300873 YP_001294962.1 CDS yceA NC_009613.1 42033 43391 D Similar to protein of unknown function YceA of E. coli; hypothetical protein 42033..43391 Flavobacterium psychrophilum JIP02/86 5299090 YP_001294963.1 CDS FP0023 NC_009613.1 43562 44953 D Similar to Fjo17 protein of Flavobacterium johnsoniae; hypothetical protein 43562..44953 Flavobacterium psychrophilum JIP02/86 5300611 YP_001294964.1 CDS gldH NC_009613.1 44928 45440 D In Flavobacterium johnsoniae, GldH is a lipoprotein that is required for gliding motility and chitin utilization; gliding motility protein GldH 44928..45440 Flavobacterium psychrophilum JIP02/86 5300068 YP_001294965.1 CDS mrcA NC_009613.1 45446 47770 D Peptidoglycan synthesis; final stages (by similarity); penicillin-binding protein 1A 45446..47770 Flavobacterium psychrophilum JIP02/86 5299072 YP_001294966.1 CDS atoD NC_009613.1 47939 48637 D Short-chain fatty acids metabolism; 3-oxoacid CoA-transferase subunit A family protein AtoD 47939..48637 Flavobacterium psychrophilum JIP02/86 5299598 YP_001294967.1 CDS FP0027 NC_009613.1 48654 51689 D Similar to putative type I restriction-modification system, M subunit, of Porphyromonas gingivalis; type I endonuclease-methyltransferase fusion protein 48654..51689 Flavobacterium psychrophilum JIP02/86 5299244 YP_001294968.1 CDS FP0028 NC_009613.1 51689 52309 D hypothetical protein 51689..52309 Flavobacterium psychrophilum JIP02/86 5300069 YP_001294969.1 CDS FP0029 NC_009613.1 52314 52511 D hypothetical protein 52314..52511 Flavobacterium psychrophilum JIP02/86 5300070 YP_001294970.1 CDS atoA NC_009613.1 52601 53257 D Short-chain fatty acids metabolism; 3-oxoacid CoA-transferase subunit B family protein AtoA 52601..53257 Flavobacterium psychrophilum JIP02/86 5300071 YP_001294971.1 CDS FP0031 NC_009613.1 53852 55291 R Similar to uncharacterized membrane protein; transmembrane protein of unknown function complement(53852..55291) Flavobacterium psychrophilum JIP02/86 5299243 YP_001294972.1 CDS FP0032 NC_009613.1 55407 56120 R Similar to predicted 3'-5' exonuclease related to the exonuclease domain of PolB, WlaX protein of Campylobacter jejuni.; hypothetical protein complement(55407..56120) Flavobacterium psychrophilum JIP02/86 5300797 YP_001294973.1 CDS ogt1 NC_009613.1 56226 56696 R Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairsalkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Can also repair O-4-methylthymine (by similarity); methylated-DNA--[protein]-cysteineS-methyltransf erase complement(56226..56696) Flavobacterium psychrophilum JIP02/86 5300798 YP_001294974.1 CDS FP0034 NC_009613.1 56980 57375 R Similar to cytochrome c551/c552 COG4654; cytochrome c551/c552 family protein complement(56980..57375) Flavobacterium psychrophilum JIP02/86 5300191 YP_001294975.1 CDS hemB NC_009613.1 57616 58608 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(57616..58608) Flavobacterium psychrophilum JIP02/86 5300799 YP_001294976.1 CDS FP0036 NC_009613.1 58613 59647 R Similar to protein of unknown function of Bacteroides thetaiotaomicron; hypothetical protein complement(58613..59647) Flavobacterium psychrophilum JIP02/86 5298866 YP_001294977.1 CDS hemF NC_009613.1 59655 60557 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(59655..60557) Flavobacterium psychrophilum JIP02/86 5300800 YP_001294978.1 CDS FP0038 NC_009613.1 60559 61122 R hypothetical protein complement(60559..61122) Flavobacterium psychrophilum JIP02/86 5300524 YP_001294979.1 CDS FP0039 NC_009613.1 61126 61647 R Acetylation of N-terminal amino-acid of ribosomal protein; ribosomal-protein-amino-adic N-acetyltransferase complement(61126..61647) Flavobacterium psychrophilum JIP02/86 5299402 YP_001294980.1 CDS FP0040 NC_009613.1 61656 62459 R Some weak similarities to proteins of unknown function; hypothetical protein complement(61656..62459) Flavobacterium psychrophilum JIP02/86 5299403 YP_001294981.1 CDS hemE NC_009613.1 62500 63525 R Similar to eukaryotic uroporphyrinogen decarboxylase COG0407; uroporphyrinogen decarboxylase complement(62500..63525) Flavobacterium psychrophilum JIP02/86 5299404 YP_001294982.1 CDS hemD NC_009613.1 63605 64267 R Porphyrin biosynthesis; fourth step (by similarity); uroporphyrinogen-III synthase complement(63605..64267) Flavobacterium psychrophilum JIP02/86 5300523 YP_001294983.1 CDS hemC NC_009613.1 64267 65193 R Porphobilinogen deaminase. Porphyrin biosynthesis by the C5 pathway; fourth step (by similarity); hydroxymethylbilane synthase complement(64267..65193) Flavobacterium psychrophilum JIP02/86 5298868 YP_001294984.1 CDS hemA NC_009613.1 65262 66503 R Porphyrin biosynthesis by the C5 pathway; first step (by similarity); glutamyl-tRNA reductase complement(65262..66503) Flavobacterium psychrophilum JIP02/86 5298867 YP_001294985.1 CDS FP0045 NC_009613.1 66733 67599 D AraC family transcriptional regulator 66733..67599 Flavobacterium psychrophilum JIP02/86 5298865 YP_001294986.1 CDS hemH NC_009613.1 67603 68622 D Protoheme biosynthesis; last step (by similarity); ferrochelatase 67603..68622 Flavobacterium psychrophilum JIP02/86 5299405 YP_001294987.1 CDS FP0047 NC_009613.1 68655 69197 D Similar to predicted membrane protein COG1981; transmembrane protein of unknown function 68655..69197 Flavobacterium psychrophilum JIP02/86 5300525 YP_001294988.1 CDS FP0048 NC_009613.1 69198 70673 D two-component system sensor histidine kinase 69198..70673 Flavobacterium psychrophilum JIP02/86 5299254 YP_001294989.1 CDS crt NC_009613.1 70677 71459 D Butyrate/butanol-producing pathway; 3-hydroxybutyryl-CoA dehydratase 70677..71459 Flavobacterium psychrophilum JIP02/86 5299255 YP_001294990.1 CDS FP0050 NC_009613.1 71468 72115 R Similar to predicted HD superfamily hydrolase COG1418; hydrolase complement(71468..72115) Flavobacterium psychrophilum JIP02/86 5298841 YP_001294991.1 CDS FP0051 NC_009613.1 72187 73176 R Similar to eukaryotic acyl-[acyl-carrier-protein] desaturase; putative acyl-[acyl-carrier-protein] desaturase complement(72187..73176) Flavobacterium psychrophilum JIP02/86 5299256 YP_001294992.1 CDS plsC NC_009613.1 73212 73946 R De novo phospholipid biosynthesis; second step. Converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at the 2 position. This enzyme can utilize either acyl-CoA or acyl-acyl carrier protein as the fatty acyl donor (by similarity); 1-acylglycerol-3-phosphate O-acyltransferase complement(73212..73946) Flavobacterium psychrophilum JIP02/86 5299257 YP_001294993.1 CDS yqiW NC_009613.1 74027 74437 R Similar to protein of unknown function YqiW of B. subtilis; hypothetical protein complement(74027..74437) Flavobacterium psychrophilum JIP02/86 5299460 YP_001294994.1 CDS FP0054 NC_009613.1 74600 75289 R Similar to predicted hydrolase (HAD superfamily) COG1011; hydrolase, haloacid dehalogenase family protein complement(74600..75289) Flavobacterium psychrophilum JIP02/86 5299232 YP_001294995.1 CDS metG NC_009613.1 75344 77404 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(75344..77404) Flavobacterium psychrophilum JIP02/86 5298893 YP_001294996.1 CDS FP0056 NC_009613.1 77725 77958 D hypothetical protein 77725..77958 Flavobacterium psychrophilum JIP02/86 5299057 YP_001294997.1 CDS FP0057 NC_009613.1 77964 78983 D Probable transmembrane protein; hypothetical protein 77964..78983 Flavobacterium psychrophilum JIP02/86 5298894 YP_001294998.1 CDS FP0058 NC_009613.1 79010 79966 D Similar to uncharacterized proteins, homologs of microcin C7 resistance protein MccF COG1619; putative carboxypeptidase 79010..79966 Flavobacterium psychrophilum JIP02/86 5298895 YP_001294999.1 CDS FP0059 NC_009613.1 80045 80425 D Similar to predicted endonuclease distantly related to archaeal Holliday junction resolvase COG0792; hypothetical protein 80045..80425 Flavobacterium psychrophilum JIP02/86 5298896 YP_001295000.1 CDS tas NC_009613.1 80426 81466 R Similar to predicted oxidoreductases (related to aryl-alcohol dehydrogenases) COG0667; aldo/keto reductase family oxidoreductase TAS complement(80426..81466) Flavobacterium psychrophilum JIP02/86 5298491 YP_001295001.1 CDS FP0061 NC_009613.1 81601 82563 R Probable outer membrane lipoprotein; flagellar motor/chemotaxis (MotB)-related protein complement(81601..82563) Flavobacterium psychrophilum JIP02/86 5299869 YP_001295002.1 CDS xth NC_009613.1 82634 83395 R Exonucleolytic cleavage in the 3'- to 5'- directionto yield nucleoside 5'-phosphates (by similarity); exodeoxyribonuclease III complement(82634..83395) Flavobacterium psychrophilum JIP02/86 5298492 YP_001295003.1 CDS FP0063 NC_009613.1 83592 85397 D Similar to putative hemolysin of Vibrio sp.; putative hemolysin 83592..85397 Flavobacterium psychrophilum JIP02/86 5300623 YP_001295004.1 CDS FP0064 NC_009613.1 85671 86657 R Similar to eukaryotic and archaeal phosphoglycerate dehydrogenases; putative phosphoglycerate dehydrogenase complement(85671..86657) Flavobacterium psychrophilum JIP02/86 5298493 YP_001295005.1 CDS FP0065 NC_009613.1 86681 87361 R Probable transmembrane protein; hypothetical protein complement(86681..87361) Flavobacterium psychrophilum JIP02/86 5298494 YP_001295006.1 CDS proC NC_009613.1 87577 88353 R Proline biosynthesis; third (last) step (by similarity); pyrroline-5-carboxylate reductase complement(87577..88353) Flavobacterium psychrophilum JIP02/86 5298537 YP_001295007.1 CDS mgtE NC_009613.1 88364 89713 R Similar to Mg/Co/Ni transporter MgtE (contains CBSdomain) COG2239. Probable transmembrane protein; Mg2+ transporter MgtE complement(88364..89713) Flavobacterium psychrophilum JIP02/86 5299142 YP_001295008.1 CDS ksgA NC_009613.1 89703 90482 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(89703..90482) Flavobacterium psychrophilum JIP02/86 5299521 YP_001295009.1 CDS FP0069 NC_009613.1 90515 91411 R Similar to abortive infection bacteriophage resistance protein COG4823; hypothetical protein complement(90515..91411) Flavobacterium psychrophilum JIP02/86 5300767 YP_001295010.1 CDS FP0070 NC_009613.1 91576 91890 R Similar to protein of unknown function of Cytophaga hutchinsonii and Bacteroides thetaiotaomicron; hypothetical protein complement(91576..91890) Flavobacterium psychrophilum JIP02/86 5298538 YP_001295011.1 CDS FP0071 NC_009613.1 91963 93741 R Similar to TPR repeat protein of Cytophaga hutchinsonii; hypothetical protein complement(91963..93741) Flavobacterium psychrophilum JIP02/86 5298539 YP_001295012.1 CDS serS NC_009613.1 93976 95247 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(93976..95247) Flavobacterium psychrophilum JIP02/86 5298540 YP_001295013.1 CDS FP0073 NC_009613.1 95459 96691 R Some similarities with protein of unknown function; hypothetical protein complement(95459..96691) Flavobacterium psychrophilum JIP02/86 5299836 YP_001295014.1 CDS FP0074 NC_009613.1 96688 97128 R Weakly similar to putative Rieske-FeS protein; hypothetical protein complement(96688..97128) Flavobacterium psychrophilum JIP02/86 5300050 YP_001295015.1 CDS FP0075 NC_009613.1 97130 98308 R Similar to predicted thiol oxidoreductase COG3488.; lipoprotein precursor complement(97130..98308) Flavobacterium psychrophilum JIP02/86 5300051 YP_001295016.1 CDS mntH NC_009613.1 98399 100270 D N-terminal region similar to similar to probable manganese transport protein MntH and C-terminal region similar to universal stress protein; manganese transport protein mntH 98399..100270 Flavobacterium psychrophilum JIP02/86 5300052 YP_001295017.1 CDS sirR NC_009613.1 100564 101217 D Iron-dependant repressor; metal-dependent transcriptional regulator 100564..101217 Flavobacterium psychrophilum JIP02/86 5300111 YP_001295018.1 CDS FP0078 NC_009613.1 101843 102334 R Some similarities with protein of unknown functionof Colwellia psychrerythraea and Shewanella oneidensis; hypothetical protein complement(101843..102334) Flavobacterium psychrophilum JIP02/86 5298528 YP_001295019.1 CDS FP0079 NC_009613.1 102595 103188 D Some similarities with predicted proline hydroxylase COG3751; hypothetical protein 102595..103188 Flavobacterium psychrophilum JIP02/86 5300053 YP_001295020.1 CDS FP0081 NC_009613.1 103517 104851 R Similar to predicted membrane-associated Zn- dependent proteases 1 COG0750; M50 family membrane-associated zinc metalloprotease precursor complement(103517..104851) Flavobacterium psychrophilum JIP02/86 5299892 YP_001295021.1 CDS FP0082 NC_009613.1 104938 106866 R Some similarities with aminopeptidase N COG0308; M1 family metalloprotease precursor complement(104938..106866) Flavobacterium psychrophilum JIP02/86 5299752 YP_001295022.1 CDS FP0083 NC_009613.1 107000 107380 R Some similarities with single-strand DNA-binding protein Ssb; hypothetical protein complement(107000..107380) Flavobacterium psychrophilum JIP02/86 5299894 YP_001295023.1 CDS FP0084 NC_009613.1 108187 108534 D hypothetical protein 108187..108534 Flavobacterium psychrophilum JIP02/86 5299895 YP_001295024.1 CDS yeeZ NC_009613.1 108535 109356 D Similar to putative enzyme of sugar metabolism YeeZ of Escherichia coli; sugar metabolism protein YeeZ 108535..109356 Flavobacterium psychrophilum JIP02/86 5299514 YP_001295025.1 CDS pepO NC_009613.1 109411 111471 R Endopeptidase with broad substrate specificity forseveral oligopeptides (by similarity); M13 family metallopeptidase PepO precursor complement(109411..111471) Flavobacterium psychrophilum JIP02/86 5300614 YP_001295026.1 CDS FP0087 NC_009613.1 111474 114893 R Similar to glycosyl hydrolases; glycosyl hydrolase complement(111474..114893) Flavobacterium psychrophilum JIP02/86 5299508 YP_001295027.1 CDS FP0088 NC_009613.1 114965 115690 D Start doubtful, the first ATG was choosen. Similarto uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems COG1999; cytochrome c oxidase biogenesis protein 114965..115690 Flavobacterium psychrophilum JIP02/86 5299515 YP_001295028.1 CDS feoA NC_009613.1 115786 116028 D Involved in ferrous ion uptake; ferrous iron transport protein A 115786..116028 Flavobacterium psychrophilum JIP02/86 5299516 YP_001295029.1 CDS feoB NC_009613.1 116028 118121 D Probable GTP-driven transporter of ferrous ion (bysimilarity); ferrous iron transport protein B 116028..118121 Flavobacterium psychrophilum JIP02/86 5299197 YP_001295030.1 CDS FP0091 NC_009613.1 118720 118884 R hypothetical protein complement(118720..118884) Flavobacterium psychrophilum JIP02/86 5299198 YP_001295031.1 CDS sdhC NC_009613.1 119212 119877 D Tricarboxylic acid cycle. Part of an enzyme complex containing three subunits: a flavoprotein (SdhA), an iron- sulfur protein (SdhB) and cytochrome b (SdhC); succinate dehydrogenase, cytochrome b subunit 119212..119877 Flavobacterium psychrophilum JIP02/86 5299517 YP_001295032.1 CDS sdhA NC_009613.1 119887 121896 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 119887..121896 Flavobacterium psychrophilum JIP02/86 5300125 YP_001295033.1 CDS FP0094 NC_009613.1 121990 122364 D hypothetical protein 121990..122364 Flavobacterium psychrophilum JIP02/86 5299344 YP_001295034.1 CDS sdhB NC_009613.1 122423 123187 D Tricarboxylic acid cycle. Part of an enzyme complex containing three subunits: a flavoprotein (SdhA), an iron- sulfur protein (SdhB) and cytochrome b (SdhC); succinate dehydrogenase/fumarate reductase iron-sulfur subunit 122423..123187 Flavobacterium psychrophilum JIP02/86 5299611 YP_001295035.1 CDS FP0096 NC_009613.1 123664 124533 D Putative lipoprotein; hypothetical protein 123664..124533 Flavobacterium psychrophilum JIP02/86 5300124 YP_001295036.1 CDS fmo NC_009613.1 124551 125699 D Probable lipoprotein, some similarities with suilysin protein of Streptococcus suis and others thiol- activated cytolysin; flavomodulin 124551..125699 Flavobacterium psychrophilum JIP02/86 5299612 YP_001295037.1 CDS FP0099 NC_009613.1 126179 127996 R Some weak similarities with outer membrane receptor proteins; hypothetical protein complement(126179..127996) Flavobacterium psychrophilum JIP02/86 5299613 YP_001295038.1 CDS FP0100 NC_009613.1 128126 130081 R Peptidoglycan synthesis; final stages (by similarity); penicillin-binding protein complement(128126..130081) Flavobacterium psychrophilum JIP02/86 5299614 YP_001295039.1 CDS FP0101 NC_009613.1 130088 130603 R hypothetical protein complement(130088..130603) Flavobacterium psychrophilum JIP02/86 5299761 YP_001295040.1 CDS FP0102 NC_009613.1 130611 130898 R Similar to protein of unknown function of Geobacter sulfurreducens and Nitrosomonas europaea; hypothetical protein complement(130611..130898) Flavobacterium psychrophilum JIP02/86 5299762 YP_001295041.1 CDS FP0103 NC_009613.1 130895 131122 R hypothetical protein complement(130895..131122) Flavobacterium psychrophilum JIP02/86 5299763 YP_001295042.1 CDS radA NC_009613.1 131156 132517 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(131156..132517) Flavobacterium psychrophilum JIP02/86 5299764 YP_001295043.1 CDS FP0105 NC_009613.1 132520 133800 R Some similarities with predicted hydrolase of the alpha/beta superfamily COG2819; hypothetical protein complement(132520..133800) Flavobacterium psychrophilum JIP02/86 5299472 YP_001295044.1 CDS FP0106 NC_009613.1 133849 134808 R Similar to predicted integral membrane protein COG0392; hypothetical protein complement(133849..134808) Flavobacterium psychrophilum JIP02/86 5298965 YP_001295045.1 CDS panD NC_009613.1 134813 135163 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(134813..135163) Flavobacterium psychrophilum JIP02/86 5298966 YP_001295046.1 CDS panC NC_009613.1 135177 136025 R Cofactor biosynthesis; pantothenate biosynthesis; pantothenate from beta-alanine and pantoate: single step [final step] (by similaity); pantoate--beta-alanine ligase complement(135177..136025) Flavobacterium psychrophilum JIP02/86 5299260 YP_001295047.1 CDS FP0109 NC_009613.1 136134 136943 D Some similarities with glycogen synthase COG0297; hypothetical protein 136134..136943 Flavobacterium psychrophilum JIP02/86 5299259 YP_001295048.1 CDS FP0110 NC_009613.1 136943 138607 D Probable lipoprotein; hypothetical protein 136943..138607 Flavobacterium psychrophilum JIP02/86 5298967 YP_001295049.1 CDS glmS NC_009613.1 138614 140461 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 138614..140461 Flavobacterium psychrophilum JIP02/86 5298968 YP_001295050.1 CDS FP0112 NC_009613.1 140731 143565 D Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor 140731..143565 Flavobacterium psychrophilum JIP02/86 5300241 YP_001295051.1 CDS FP0113 NC_009613.1 143667 145166 D Similar to putative outer membrane protein of Ornithobacterium rhinotracheale and Cytophaga hutchinsonii; outer membrane protein 143667..145166 Flavobacterium psychrophilum JIP02/86 5298656 YP_001295052.1 CDS atpD NC_009613.1 145371 146882 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 145371..146882 Flavobacterium psychrophilum JIP02/86 5298657 YP_001295053.1 CDS atpC NC_009613.1 146962 147243 D Produces ATP from ADP in the presence of a proton gradient across the membrane (by similarity); ATP synthase epsilon subunit 146962..147243 Flavobacterium psychrophilum JIP02/86 5298924 YP_001295054.1 CDS FP0116 NC_009613.1 147308 147823 D Probable transmembrane protein; hypothetical protein 147308..147823 Flavobacterium psychrophilum JIP02/86 5298923 YP_001295055.1 CDS FP0117 NC_009613.1 147904 148092 D hypothetical protein 147904..148092 Flavobacterium psychrophilum JIP02/86 5298658 YP_001295056.1 CDS FP0118 NC_009613.1 148096 148212 D hypothetical protein 148096..148212 Flavobacterium psychrophilum JIP02/86 5298659 YP_001295057.1 CDS FP0119 NC_009613.1 148273 149430 D putative 8-amino-7-oxononanoate synthase 148273..149430 Flavobacterium psychrophilum JIP02/86 5298627 YP_001295058.1 CDS FP0120 NC_009613.1 149473 149814 D Some weak similarities with protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 149473..149814 Flavobacterium psychrophilum JIP02/86 5298628 YP_001295059.1 CDS FP0121 NC_009613.1 149923 150897 D Some similarities with putative outer membrane protein PG57 of Porphyromonas gingivalis; hypothetical protein 149923..150897 Flavobacterium psychrophilum JIP02/86 5298629 YP_001295060.1 CDS FP0122 NC_009613.1 150952 151953 D Similar to Long-chain-fatty-acid--luciferin- component ligase (Acyl-protein synthetase) LuxE; acyl-protein synthetase 150952..151953 Flavobacterium psychrophilum JIP02/86 5298630 YP_001295061.1 CDS FP0123 NC_009613.1 151964 152374 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(151964..152374) Flavobacterium psychrophilum JIP02/86 5299562 YP_001295062.1 CDS pheS NC_009613.1 152564 153583 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(152564..153583) Flavobacterium psychrophilum JIP02/86 5299563 YP_001295063.1 CDS FP0125 NC_009613.1 153722 154078 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(153722..154078) Flavobacterium psychrophilum JIP02/86 5299001 YP_001295064.1 CDS FP0126 NC_009613.1 154223 154753 D Similar to uncharacterized membrane protein, required for colicin V production of Psychrobacter sp. and Geobacter metallireducens; transmembrane protein 154223..154753 Flavobacterium psychrophilum JIP02/86 5299564 YP_001295065.1 CDS batE NC_009613.1 154737 155480 R Similar to BatE protein of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis. Probable transmembrane protein; BatE protein complement(154737..155480) Flavobacterium psychrophilum JIP02/86 5299565 YP_001295066.1 CDS batD NC_009613.1 156340 158145 R Similar to BatD protein of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis; BatD protein complement(156340..158145) Flavobacterium psychrophilum JIP02/86 5300229 YP_001295067.1 CDS batC NC_009613.1 158167 158880 R Similar to BatC protein of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis; BatC protein complement(158167..158880) Flavobacterium psychrophilum JIP02/86 5300228 YP_001295068.1 CDS batB NC_009613.1 159785 160825 R Similar to BatB protein of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis. Probable transmembrane protein; BatB protein complement(159785..160825) Flavobacterium psychrophilum JIP02/86 5300227 YP_001295069.1 CDS FP0131 NC_009613.1 160995 161348 R Similar to protein of unknown function; hypothetical protein complement(160995..161348) Flavobacterium psychrophilum JIP02/86 5300226 YP_001295070.1 CDS batA NC_009613.1 161403 162404 R Similar to BatA protein of the Batl (Bacteroides aerotolerance) operon in Bacteroides fragilis. Probable transmembrane protein; BatA protein complement(161403..162404) Flavobacterium psychrophilum JIP02/86 5299096 YP_001295071.1 CDS FP0133 NC_009613.1 162406 163992 R Some similarities with protein of unknown functionof the CFB phylum. Probable transmembrane protein; hypothetical protein complement(162406..163992) Flavobacterium psychrophilum JIP02/86 5300220 YP_001295072.1 CDS FP0134 NC_009613.1 164982 165167 R hypothetical protein complement(164982..165167) Flavobacterium psychrophilum JIP02/86 5299097 YP_001295073.1 CDS FP0135 NC_009613.1 165168 166034 R Some similarities with uncharacterized conserved protein COG1721; hypothetical protein complement(165168..166034) Flavobacterium psychrophilum JIP02/86 5299098 YP_001295074.1 CDS FP0136 NC_009613.1 166111 167115 R Similar to MoxR-like ATPases COG0714; MoxR family ATPase complement(166111..167115) Flavobacterium psychrophilum JIP02/86 5299099 YP_001295075.1 CDS FP0137 NC_009613.1 167200 168435 D Some weak similarities with protein of unknown function of Crocosphaera watsonii; hypothetical protein 167200..168435 Flavobacterium psychrophilum JIP02/86 5299450 YP_001295076.1 CDS pphA NC_009613.1 168416 169165 D Serine/threonine protein phosphatase plays a key role in signaling protein misfolding (by similarity); phosphoprotein phosphatase 168416..169165 Flavobacterium psychrophilum JIP02/86 5299451 YP_001295077.1 CDS FP0139 NC_009613.1 169215 169730 D Probable exported protein; hypothetical protein 169215..169730 Flavobacterium psychrophilum JIP02/86 5300182 YP_001295078.1 CDS phnA NC_009613.1 169815 170396 D Similar to uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism COG2824; PhnA protein 169815..170396 Flavobacterium psychrophilum JIP02/86 5299452 YP_001295079.1 CDS gpsA NC_009613.1 170486 171481 R De novo phospholipid biosynthesis; glycerol-3 phosphate formation (by similarity); glycerol-3-phosphate dehydrogenase (NAD(P)+) complement(170486..171481) Flavobacterium psychrophilum JIP02/86 5300303 YP_001295080.1 CDS FP0142 NC_009613.1 171734 172900 R Similar to uncharacterized oxidoreductases, Fe- dependent alcohol dehydrogenase family COG1979; alcohol dehydrogenase complement(171734..172900) Flavobacterium psychrophilum JIP02/86 5298797 YP_001295081.1 CDS nadD NC_009613.1 172975 173556 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(172975..173556) Flavobacterium psychrophilum JIP02/86 5299453 YP_001295082.1 CDS FP0144 NC_009613.1 173831 176716 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(173831..176716) Flavobacterium psychrophilum JIP02/86 5298948 YP_001295083.1 CDS pgi NC_009613.1 176896 178539 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(176896..178539) Flavobacterium psychrophilum JIP02/86 5299217 YP_001295084.1 CDS rplY NC_009613.1 178681 179292 R the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc complement(178681..179292) Flavobacterium psychrophilum JIP02/86 5298998 YP_001295085.1 CDS prsA NC_009613.1 179380 180321 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(179380..180321) Flavobacterium psychrophilum JIP02/86 5300585 YP_001295086.1 CDS FP0150 NC_009613.1 181087 182475 D Similar to acetylornithine deacetylase/succinyl- diaminopimelate desuccinylase and related deacylases COG0624; ArgE/DapE/Acy1 family protein 181087..182475 Flavobacterium psychrophilum JIP02/86 5300054 YP_001295087.1 CDS FP0151 NC_009613.1 182486 183037 D Similar to phospholipid N-methyltransferase COG3963; phospholipid N-methyltransferase 182486..183037 Flavobacterium psychrophilum JIP02/86 5299218 YP_001295088.1 CDS FP0152 NC_009613.1 183724 184824 D Weakly similar to protein of unknown function of Streptomyces avermitilis. Probable transmembrane protein; hypothetical protein 183724..184824 Flavobacterium psychrophilum JIP02/86 5299219 YP_001295089.1 CDS pepP NC_009613.1 185245 186537 D Release of any N-terminal amino acid, including proline, that is linked to proline, even from a dipeptide ortripeptide (by similarity); Xaa-Pro aminopeptidase 185245..186537 Flavobacterium psychrophilum JIP02/86 5299220 YP_001295090.1 CDS FP0154 NC_009613.1 186647 187432 D Similar to predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) COG0596; hydrolase 186647..187432 Flavobacterium psychrophilum JIP02/86 5300483 YP_001295091.1 CDS FP0155 NC_009613.1 187429 190197 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(187429..190197) Flavobacterium psychrophilum JIP02/86 5299188 YP_001295092.1 CDS FP0156 NC_009613.1 190266 191663 R Outer membrane protein (OmpA-like) COG2885; OmpA family outer membrane protein P60 complement(190266..191663) Flavobacterium psychrophilum JIP02/86 5299189 YP_001295093.1 CDS kbl NC_009613.1 191767 192963 R catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase complement(191767..192963) Flavobacterium psychrophilum JIP02/86 5299190 YP_001295094.1 CDS FP0158 NC_009613.1 192994 194607 R Similar to uncharacterized protein conserved in bacteria; hypothetical protein complement(192994..194607) Flavobacterium psychrophilum JIP02/86 5298929 YP_001295095.1 CDS FP0159 NC_009613.1 194655 197813 R Similar to ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) COG1074; ATP-dependent DNA helicase UvrD complement(194655..197813) Flavobacterium psychrophilum JIP02/86 5299191 YP_001295096.1 CDS sodA NC_009613.1 198079 198684 D Mn; manganese; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (bysimilarity); superoxide dismutase 198079..198684 Flavobacterium psychrophilum JIP02/86 5299652 YP_001295097.1 CDS tyrS NC_009613.1 199342 200637 R tyrosine--tRNA ligase complement(199342..200637) Flavobacterium psychrophilum JIP02/86 5298531 YP_001295098.1 CDS FP0162 NC_009613.1 200791 201786 D Similar to nucleoside-diphosphate-sugar epimerasesCOG0451 and to putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes COG3320; hypothetical protein 200791..201786 Flavobacterium psychrophilum JIP02/86 5299814 YP_001295099.1 CDS FP0163 NC_009613.1 201783 202205 R lipoprotein precursor complement(201783..202205) Flavobacterium psychrophilum JIP02/86 5299653 YP_001295100.1 CDS pyrC1 NC_009613.1 202210 203547 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(202210..203547) Flavobacterium psychrophilum JIP02/86 5299654 YP_001295101.1 CDS FP0165 NC_009613.1 203570 204295 R glycosyl transferase, group 2 family protein complement(203570..204295) Flavobacterium psychrophilum JIP02/86 5300531 YP_001295102.1 CDS FP0166 NC_009613.1 204542 205669 R cell surface leucine-rich repeat-containing protein complement(204542..205669) Flavobacterium psychrophilum JIP02/86 5299655 YP_001295103.1 CDS FP0167 NC_009613.1 205983 207179 R cell surface leucine-rich repeat-containing protein complement(205983..207179) Flavobacterium psychrophilum JIP02/86 5298698 YP_001295104.1 CDS FP0168 NC_009613.1 207493 208899 R cell surface leucine-rich repeat-containing protein complement(207493..208899) Flavobacterium psychrophilum JIP02/86 5298699 YP_001295105.1 CDS FP0169 NC_009613.1 208915 209907 R cell surface leucine-rich repeat-containing protein complement(208915..209907) Flavobacterium psychrophilum JIP02/86 5298700 YP_001295106.1 CDS FP0170 NC_009613.1 209923 210846 R cell surface leucine-rich repeat-containing protein complement(209923..210846) Flavobacterium psychrophilum JIP02/86 5298701 YP_001295107.1 CDS FP0171 NC_009613.1 210862 211713 R cell surface leucine-rich repeat-containing protein complement(210862..211713) Flavobacterium psychrophilum JIP02/86 5300930 YP_001295108.1 CDS FP0172 NC_009613.1 211729 212787 R cell surface leucine-rich repeat-containing protein complement(211729..212787) Flavobacterium psychrophilum JIP02/86 5300931 YP_001295109.1 CDS FP0173 NC_009613.1 212802 214205 R cell surface leucine-rich repeat-containing protein complement(212802..214205) Flavobacterium psychrophilum JIP02/86 5300932 YP_001295110.1 CDS FP0174 NC_009613.1 214532 215521 R cell surface leucine-rich repeat-containing protein complement(214532..215521) Flavobacterium psychrophilum JIP02/86 5300933 YP_001295111.1 CDS FP0175 NC_009613.1 215835 217100 R cell surface leucine-rich repeat-containing protein complement(215835..217100) Flavobacterium psychrophilum JIP02/86 5300755 YP_001295112.1 CDS FP0176 NC_009613.1 217414 218403 R cell surface leucine-rich repeat-containing protein complement(217414..218403) Flavobacterium psychrophilum JIP02/86 5300756 YP_001295113.1 CDS FP0177 NC_009613.1 218418 219473 R cell surface leucine-rich repeat-containing protein complement(218418..219473) Flavobacterium psychrophilum JIP02/86 5300757 YP_001295114.1 CDS FP0178 NC_009613.1 219489 220337 R cell surface leucine-rich repeat-containing protein complement(219489..220337) Flavobacterium psychrophilum JIP02/86 5300758 YP_001295115.1 CDS FP0179 NC_009613.1 220352 221479 R cell surface leucine-rich repeat-containing protein complement(220352..221479) Flavobacterium psychrophilum JIP02/86 5298541 YP_001295116.1 CDS FP0180 NC_009613.1 221495 222481 R cell surface leucine-rich repeat-containing protein complement(221495..222481) Flavobacterium psychrophilum JIP02/86 5298542 YP_001295117.1 CDS FP0181 NC_009613.1 223067 223732 D Probable transmembrane protein; hypothetical protein 223067..223732 Flavobacterium psychrophilum JIP02/86 5298543 YP_001295118.1 CDS FP0182 NC_009613.1 223753 224502 D Similar to uroporphyrinogen-III synthase COG1587; hypothetical protein 223753..224502 Flavobacterium psychrophilum JIP02/86 5298544 YP_001295119.1 CDS FP0183 NC_009613.1 224568 225338 D Similar to Enoyl-CoA hydratase/carnithine racemaseCOG1024; enoyl-CoA hydratase/isomerase family protein 224568..225338 Flavobacterium psychrophilum JIP02/86 5298482 YP_001295120.1 CDS FP0184 NC_009613.1 225411 225815 R Some similarities with protein chain release factor B COG1186; protein chain release factor complement(225411..225815) Flavobacterium psychrophilum JIP02/86 5298483 YP_001295121.1 CDS FP0185 NC_009613.1 225815 227929 R N-terminal region similar to C-terminal region of transcriptional regulator NadR and C-terminal region similar to protein of unknown function of the CFB phylum; transcription regulator NadR complement(225815..227929) Flavobacterium psychrophilum JIP02/86 5298484 YP_001295122.1 CDS pnuC NC_009613.1 227890 228513 R PnuC is an integral membrane protein required for NMN transport across the cytoplasmic membrane. It is believed to function cooperatively with NadR. TC : 4.B.1.1.Z; nicotinamide mononucleotide transporter complement(227890..228513) Flavobacterium psychrophilum JIP02/86 5298485 YP_001295123.1 CDS pcrB NC_009613.1 228522 229244 R PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase-like protein complement(228522..229244) Flavobacterium psychrophilum JIP02/86 5299462 YP_001295124.1 CDS sfp NC_009613.1 229255 229896 R Similar to phosphopantetheinyl transferase COG2091; phosphopantetheinyl transferase complement(229255..229896) Flavobacterium psychrophilum JIP02/86 5298616 YP_001295125.1 CDS ahcY NC_009613.1 230122 231438 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 230122..231438 Flavobacterium psychrophilum JIP02/86 5298527 YP_001295126.1 CDS FP0190 NC_009613.1 231573 232181 R Start doubtful, the first ATG was choosen; hypothetical protein complement(231573..232181) Flavobacterium psychrophilum JIP02/86 5298738 YP_001295127.1 CDS ltd NC_009613.1 232301 233251 D Highly similar to psychrophilic and thermolabile L- threonine dehydrogenase from Flavobacterium frigidimaris strain KUC-1. Threonine catabolism; L-threonine 3-dehydrogenase 232301..233251 Flavobacterium psychrophilum JIP02/86 5300548 YP_001295128.1 CDS mfd NC_009613.1 233613 236966 R Necessary for strand-specific repair. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognized byTRCF which releases RNAP and the truncated transcript; the TCRF may replace RNAP at the lesion site and then recruit the uvrA/B/C repair system (by similarity); transcription-repair coupling factor complement(233613..236966) Flavobacterium psychrophilum JIP02/86 5299367 YP_001295129.1 CDS FP0193 NC_009613.1 237082 237507 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 237082..237507 Flavobacterium psychrophilum JIP02/86 5299520 YP_001295130.1 CDS FP0194 NC_009613.1 237592 238113 D Probable pseudogene, C-terminal region similar to C- terminal region of rare lipoprotein A; hypothetical protein 237592..238113 Flavobacterium psychrophilum JIP02/86 5300549 YP_001295131.1 CDS FP0195 NC_009613.1 238080 238547 R Similar to uncharacterized protein conserved in bacteria COG2954; hypothetical protein complement(238080..238547) Flavobacterium psychrophilum JIP02/86 5300550 YP_001295132.1 CDS purF NC_009613.1 238936 240834 R De novo purine biosynthesis; first step; amidophosphoribosyltransferase complement(238936..240834) Flavobacterium psychrophilum JIP02/86 5300551 YP_001295133.1 CDS FP0197 NC_009613.1 240904 241827 R carbohydrate kinase complement(240904..241827) Flavobacterium psychrophilum JIP02/86 5298683 YP_001295134.1 CDS rnhA NC_009613.1 241904 242383 R Endonuclease that specifically degrades the RNA ofRNA-DNA hybrids (by similarity); ribonuclease HI complement(241904..242383) Flavobacterium psychrophilum JIP02/86 5300825 YP_001295135.1 CDS purN NC_009613.1 242385 242954 R De novo purine biosynthesis; third step; phosphoribosylglycinamide formyltransferase complement(242385..242954) Flavobacterium psychrophilum JIP02/86 5299741 YP_001295136.1 CDS acpP NC_009613.1 243129 243365 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 243129..243365 Flavobacterium psychrophilum JIP02/86 5300026 YP_001295137.1 CDS fabF NC_009613.1 243718 244968 D Fatty acid biosynthesis; 3-oxoacyl-(acyl-carrier-protein) synthase II 243718..244968 Flavobacterium psychrophilum JIP02/86 5298734 YP_001295138.1 CDS rnc NC_009613.1 244977 245717 D Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs (by similarity); ribonuclease III 244977..245717 Flavobacterium psychrophilum JIP02/86 5298888 YP_001295139.1 CDS FP0203 NC_009613.1 245830 246309 D hypothetical protein 245830..246309 Flavobacterium psychrophilum JIP02/86 5299740 YP_001295140.1 CDS pykA NC_009613.1 246313 247743 D Glycolysis; final step; pyruvate kinase 246313..247743 Flavobacterium psychrophilum JIP02/86 5300826 YP_001295141.1 CDS FP0205 NC_009613.1 247899 248609 R Some similarities with protein of unknown functionof Xanthomonas axonopodis; hypothetical protein complement(247899..248609) Flavobacterium psychrophilum JIP02/86 5300529 YP_001295142.1 CDS FP0206 NC_009613.1 248683 249042 R Similar to uncharacterized protein conserved in bacteria COG2315; hypothetical protein complement(248683..249042) Flavobacterium psychrophilum JIP02/86 5300827 YP_001295143.1 CDS FP0207 NC_009613.1 249048 249800 R Similar to predicted metal-dependent hydrolase COG1878; arylformamidase complement(249048..249800) Flavobacterium psychrophilum JIP02/86 5300828 YP_001295144.1 CDS FP0208 NC_009613.1 249881 251014 R Porphyrin biosynthesis; coproporphyrinogen oxidase complement(249881..251014) Flavobacterium psychrophilum JIP02/86 5298518 YP_001295145.1 CDS ruvC NC_009613.1 251017 251571 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(251017..251571) Flavobacterium psychrophilum JIP02/86 5298519 YP_001295146.1 CDS FP0210 NC_009613.1 251626 252552 D Probable transmembrane protein; hypothetical protein 251626..252552 Flavobacterium psychrophilum JIP02/86 5299342 YP_001295147.1 CDS FP0211 NC_009613.1 252540 253649 D Similar to glycosyltransferases , probably involved in cell wall biogenesis COG1215; glycosyl transferase, group 2 family protein 252540..253649 Flavobacterium psychrophilum JIP02/86 5298520 YP_001295148.1 CDS FP0212 NC_009613.1 253757 254230 R hypothetical protein complement(253757..254230) Flavobacterium psychrophilum JIP02/86 5298521 YP_001295149.1 CDS FP0213 NC_009613.1 254300 254806 D Similar to uncharacterized protein conserved in bacteria COG2839 . Probable transmembrane protein; hypothetical protein 254300..254806 Flavobacterium psychrophilum JIP02/86 5298495 YP_001295150.1 CDS FP0214 NC_009613.1 255009 255410 R hypothetical protein complement(255009..255410) Flavobacterium psychrophilum JIP02/86 5298496 YP_001295151.1 CDS FP0215 NC_009613.1 255560 256258 R Probable exported protein; hypothetical protein complement(255560..256258) Flavobacterium psychrophilum JIP02/86 5298497 YP_001295152.1 CDS FP0216 NC_009613.1 256273 257019 R Probable exported protein; hypothetical protein complement(256273..257019) Flavobacterium psychrophilum JIP02/86 5298498 YP_001295153.1 CDS ileS NC_009613.1 257204 260605 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 257204..260605 Flavobacterium psychrophilum JIP02/86 5300134 YP_001295154.1 CDS dksA NC_009613.1 260612 260992 D General stress protein; DnaK suppressor protein 260612..260992 Flavobacterium psychrophilum JIP02/86 5299548 YP_001295155.1 CDS lspA NC_009613.1 261229 261822 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 261229..261822 Flavobacterium psychrophilum JIP02/86 5298962 YP_001295156.1 CDS ygfA NC_009613.1 261823 262386 R 5-formyltetrahydrofolate cyclo-ligase complement(261823..262386) Flavobacterium psychrophilum JIP02/86 5299365 YP_001295157.1 CDS FP0221 NC_009613.1 262431 263408 R Similar to predicted deacylase COG3608; hypothetical protein complement(262431..263408) Flavobacterium psychrophilum JIP02/86 5299026 YP_001295158.1 CDS uvrC NC_009613.1 263492 265291 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 263492..265291 Flavobacterium psychrophilum JIP02/86 5300135 YP_001295159.1 CDS FP0223 NC_009613.1 265304 267613 D Similar to putative patatin-like phospholipase of the CFB phylum; alpha-beta hydrolase superfamily esterase 265304..267613 Flavobacterium psychrophilum JIP02/86 5299715 YP_001295160.1 CDS FP0224 NC_009613.1 267714 269192 D Amino Acid-Polyamine-Organocation (APC) Superfamily. TC 2.A.3.Y.Z; amino acid-transporting permease 267714..269192 Flavobacterium psychrophilum JIP02/86 5300136 YP_001295161.1 CDS hmgA NC_009613.1 269454 270611 D Catabolism of tyrosine; third step and catabolism of phenylalanine; fourth step (by similarity); homogentisate 1,2-dioxygenase 269454..270611 Flavobacterium psychrophilum JIP02/86 5300137 YP_001295162.1 CDS hppD NC_009613.1 270814 271974 D Tyrosine catabolism; 4-hydroxyphenylpyruvate dioxygenase 270814..271974 Flavobacterium psychrophilum JIP02/86 5298875 YP_001295163.1 CDS FP0227 NC_009613.1 272270 273040 D Similar to protein of unknown function; hypothetical protein 272270..273040 Flavobacterium psychrophilum JIP02/86 5300132 YP_001295164.1 CDS FP0228 NC_009613.1 273042 273968 D Tryptophan metabolism; tryptophan 2,3-dioxygenase 273042..273968 Flavobacterium psychrophilum JIP02/86 5299523 YP_001295165.1 CDS FP0229 NC_009613.1 273982 275214 D M23/M37 family peptidase 273982..275214 Flavobacterium psychrophilum JIP02/86 5299524 YP_001295166.1 CDS pth NC_009613.1 275229 275858 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 275229..275858 Flavobacterium psychrophilum JIP02/86 5299525 YP_001295167.1 CDS fpp1 NC_009613.1 275907 279323 R Calcium-induced and growth-phase-dependent metalloprotease. Probable virulence factor, secreted protein. C-terminal region similar to psychrophilic metalloprotease Fpp2; metalloprotease Fpp1 precursor complement(275907..279323) Flavobacterium psychrophilum JIP02/86 5298768 YP_001295168.1 CDS fpp2 NC_009613.1 279431 282259 R Probable virulence factor, secreted protein; metalloprotease Fpp2 precursor complement(279431..282259) Flavobacterium psychrophilum JIP02/86 5300255 YP_001295169.1 CDS ribF NC_009613.1 282511 283443 D bifunctional riboflavin kinase/FMN adenylyltransferase 282511..283443 Flavobacterium psychrophilum JIP02/86 5300256 YP_001295170.1 CDS bioB NC_009613.1 283640 284728 D Biotin biosynthesis; last step; biotin synthase 283640..284728 Flavobacterium psychrophilum JIP02/86 5299299 YP_001295171.1 CDS FP0235 NC_009613.1 284778 284984 R hypothetical protein complement(284778..284984) Flavobacterium psychrophilum JIP02/86 5299275 YP_001295172.1 CDS FP0237 NC_009613.1 285324 285728 R Similar to lactoylglutathione lyase and related lyases COG0346; lyase complement(285324..285728) Flavobacterium psychrophilum JIP02/86 5299526 YP_001295173.1 CDS rbfA NC_009613.1 285938 286330 D Essential for efficient processing of 16S rRNA. Probably part of the 30S subunit prior to or during the final step in the processing of 16S free 30S ribosomal subunits. Could be some accessory protein needed for efficient assembly of the 30S subunit. May interact with the 5'terminal helix region of 16S rRNA. Has affinity for free ribosomal 30S subunits but not for 70S ribosomes (by simialrity); ribosome-binding factor A 285938..286330 Flavobacterium psychrophilum JIP02/86 5300007 YP_001295174.1 CDS FP0239 NC_009613.1 286332 287531 D ABC transporter, permease (IM), o228-family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease 286332..287531 Flavobacterium psychrophilum JIP02/86 5299379 YP_001295175.1 CDS queA NC_009613.1 287641 288690 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(287641..288690) Flavobacterium psychrophilum JIP02/86 5299687 YP_001295176.1 CDS aroA NC_009613.1 288864 290093 R Aromatic amino acids biosynthesis; shikimate pathway; sixth step; 3-phosphoshikimate 1-carboxyvinyltransferase complement(288864..290093) Flavobacterium psychrophilum JIP02/86 5299471 YP_001295177.1 CDS FP0242 NC_009613.1 290138 290464 R Similar to predicted pyrophosphatase COG1694; hypothetical protein complement(290138..290464) Flavobacterium psychrophilum JIP02/86 5300810 YP_001295178.1 CDS FP0243 NC_009613.1 290652 291011 R Similar to predicted endonuclease containing a URIdomain COG2827; hypothetical protein complement(290652..291011) Flavobacterium psychrophilum JIP02/86 5299688 YP_001295179.1 CDS FP0244 NC_009613.1 292038 292220 R hypothetical protein complement(292038..292220) Flavobacterium psychrophilum JIP02/86 5299689 YP_001295180.1 CDS dinD NC_009613.1 292278 293123 R DNA-damage-inducible protein D complement(292278..293123) Flavobacterium psychrophilum JIP02/86 5299164 YP_001295181.1 CDS FP0246 NC_009613.1 293237 296248 R type II endonuclease-methyltransferasefusion protein complement(293237..296248) Flavobacterium psychrophilum JIP02/86 5298961 YP_001295182.1 CDS dtd NC_009613.1 296292 296744 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(296292..296744) Flavobacterium psychrophilum JIP02/86 5299165 YP_001295183.1 CDS engC NC_009613.1 296855 297835 R EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase complement(296855..297835) Flavobacterium psychrophilum JIP02/86 5300856 YP_001295184.1 CDS FP0249 NC_009613.1 297946 299028 R putative phospho-2-dehydro-3-deoxyheptonate aldolase complement(297946..299028) Flavobacterium psychrophilum JIP02/86 5300876 YP_001295185.1 CDS aspC3 NC_009613.1 299148 300359 R Similar to aspartate/tyrosine/aromatic aminotransferase COG0436; aspartate transaminase AspC3 complement(299148..300359) Flavobacterium psychrophilum JIP02/86 5299166 YP_001295186.1 CDS pheA NC_009613.1 300356 301192 R L-phenylalanine biosynthesis; prephenate dehydratase complement(300356..301192) Flavobacterium psychrophilum JIP02/86 5299241 YP_001295187.1 CDS gldA NC_009613.1 301476 302372 D Highly similar to gliding motility protein GldA ofFlavobacterium johnsoniae. ABC transporter, ATP-binding protein (ABC), DRI-family, DRB-subfamily, export of unknownsubstrat, TC 3.A.1.Y.Z; gliding motility protein GldA 301476..302372 Flavobacterium psychrophilum JIP02/86 5299000 YP_001295188.1 CDS FP0253 NC_009613.1 302379 303191 D Similar to YbfI protein of B. subtilis; AraC family transcriptional regulator 302379..303191 Flavobacterium psychrophilum JIP02/86 5299777 YP_001295189.1 CDS FP0254 NC_009613.1 303249 304418 D hypothetical protein 303249..304418 Flavobacterium psychrophilum JIP02/86 5299167 YP_001295190.1 CDS FP0255 NC_009613.1 304989 306089 R Amino-acid biosynthesis; homoserine dehydrogenase complement(304989..306089) Flavobacterium psychrophilum JIP02/86 5299793 YP_001295191.1 CDS metX NC_009613.1 306076 307077 R Amino-acid biosynthesis; L-methionine biosynthesis; O-acetyl-L-homoserine from L-homoserine: single step (bysimilarity); homoserine O-acetyltransferase complement(306076..307077) Flavobacterium psychrophilum JIP02/86 5299794 YP_001295192.1 CDS metY NC_009613.1 307156 308448 R Similar to O-acetylhomoserine sulfhydrylase COG2873; O-acetylhomoserine aminocarboxypropyltransferase complement(307156..308448) Flavobacterium psychrophilum JIP02/86 5299518 YP_001295193.1 CDS FP0259 NC_009613.1 309508 310434 R Some similarities with uncharacterized conserved protein COG1721; hypothetical protein complement(309508..310434) Flavobacterium psychrophilum JIP02/86 5299519 YP_001295194.1 CDS FP0260 NC_009613.1 310657 310974 R Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein complement(310657..310974) Flavobacterium psychrophilum JIP02/86 5298897 YP_001295195.1 CDS FP0261 NC_009613.1 311190 312128 R Probable exported protein; hypothetical protein complement(311190..312128) Flavobacterium psychrophilum JIP02/86 5299796 YP_001295196.1 CDS FP0262 NC_009613.1 312432 313046 R Similar to deoxynucleoside kinases COG1428; deoxynucleoside kinase complement(312432..313046) Flavobacterium psychrophilum JIP02/86 5300152 YP_001295197.1 CDS FP0263 NC_009613.1 313046 313837 R hypothetical protein complement(313046..313837) Flavobacterium psychrophilum JIP02/86 5300153 YP_001295198.1 CDS FP0264 NC_009613.1 315368 315523 D Probable exported protein; hypothetical protein 315368..315523 Flavobacterium psychrophilum JIP02/86 5300154 YP_001295199.1 CDS FP0265 NC_009613.1 315564 316490 D Some weak similarities with putative outer membrane proteins; hypothetical protein 315564..316490 Flavobacterium psychrophilum JIP02/86 5300155 YP_001295200.1 CDS FP0266 NC_009613.1 316495 317346 D Similar to protein of unknown function of Porphyromonas gingivalis; hypothetical protein 316495..317346 Flavobacterium psychrophilum JIP02/86 5300284 YP_001295201.1 CDS FP0267 NC_009613.1 317487 320198 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 317487..320198 Flavobacterium psychrophilum JIP02/86 5300285 YP_001295202.1 CDS metK NC_009613.1 320372 321622 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(320372..321622) Flavobacterium psychrophilum JIP02/86 5300286 YP_001295203.1 CDS recO NC_009613.1 322224 322940 R Involved in DNA repair and recF pathway recombination (by similarity); DNA repair protein RecO complement(322224..322940) Flavobacterium psychrophilum JIP02/86 5299058 YP_001295204.1 CDS FP0270 NC_009613.1 322999 325281 R Similar to the immunoreactive 84kD antigen PG93 ofPorphyromonas gingivalis; hypothetical protein complement(322999..325281) Flavobacterium psychrophilum JIP02/86 5300213 YP_001295205.1 CDS gdhA NC_009613.1 325410 326753 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(325410..326753) Flavobacterium psychrophilum JIP02/86 5300287 YP_001295206.1 CDS FP0272 NC_009613.1 326945 327772 D hypothetical protein 326945..327772 Flavobacterium psychrophilum JIP02/86 5300560 YP_001295207.1 CDS FP0273 NC_009613.1 327954 328739 R Similar to protein of unknown function; hypothetical protein complement(327954..328739) Flavobacterium psychrophilum JIP02/86 5300377 YP_001295208.1 CDS FP0274 NC_009613.1 328844 329848 R Some similarities with thiol-disulfide isomerase and thioredoxins COG0526; hypothetical protein complement(328844..329848) Flavobacterium psychrophilum JIP02/86 5300378 YP_001295209.1 CDS aspS NC_009613.1 329951 331702 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 329951..331702 Flavobacterium psychrophilum JIP02/86 5300379 YP_001295210.1 CDS FP0276 NC_009613.1 331807 332007 D Similar to cold shock proteins COG1278; cold shock protein 331807..332007 Flavobacterium psychrophilum JIP02/86 5299242 YP_001295211.1 CDS FP0277 NC_009613.1 332153 332593 R Similar to cytosine/adenosine deaminases COG0590; cytosine/adenosine deaminase complement(332153..332593) Flavobacterium psychrophilum JIP02/86 5300380 YP_001295212.1 CDS FP0278 NC_009613.1 332656 333243 D Some similarities with proteins of unknown function of Cytophaga hutchinsonii; hypothetical protein 332656..333243 Flavobacterium psychrophilum JIP02/86 5300409 YP_001295213.1 CDS dxs NC_009613.1 333290 335062 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 333290..335062 Flavobacterium psychrophilum JIP02/86 5300410 YP_001295214.1 CDS FP0280 NC_009613.1 335114 337858 R Highly similar to probable metalloprotease of Flavobacterium psychrophilum. Some similarities with fungi metalloproteases; M36 fungalysin family metalloprotease precursor complement(335114..337858) Flavobacterium psychrophilum JIP02/86 5300858 YP_001295215.1 CDS FP0281 NC_009613.1 338450 341209 R Highly similar to probable metalloprotease of Flavobacterium psychrophilum. Some similarities with fungi metalloproteases; M36 fungalysin family metalloprotease precursor complement(338450..341209) Flavobacterium psychrophilum JIP02/86 5300411 YP_001295216.1 CDS dgt NC_009613.1 341295 342638 R dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs (by similarity); deoxyguanosinetriphosphate triphosphohydrolase (dGTPase) complement(341295..342638) Flavobacterium psychrophilum JIP02/86 5300412 YP_001295217.1 CDS FP0285 NC_009613.1 344154 346472 R hypothetical protein complement(344154..346472) Flavobacterium psychrophilum JIP02/86 5299399 YP_001295218.1 CDS FP0286 NC_009613.1 347639 348229 R hypothetical protein complement(347639..348229) Flavobacterium psychrophilum JIP02/86 5299400 YP_001295219.1 CDS FP0287 NC_009613.1 348334 348939 R Putative lipoprotein; hypothetical protein complement(348334..348939) Flavobacterium psychrophilum JIP02/86 5299401 YP_001295220.1 CDS FP0288 NC_009613.1 348943 349572 R hypothetical protein complement(348943..349572) Flavobacterium psychrophilum JIP02/86 5300469 YP_001295221.1 CDS FP0289 NC_009613.1 349777 351087 R Probably involved in peptidoglycan modification (by similarity); penicillin-binding protein complement(349777..351087) Flavobacterium psychrophilum JIP02/86 5300470 YP_001295222.1 CDS polA NC_009613.1 351115 353961 R In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' and 5' to 3' exonuclease activity.It is able to utilize nicked circular duplex DNA as a template and can unwind the parental DNA strand from its template (by similarity); DNA polymerase I complement(351115..353961) Flavobacterium psychrophilum JIP02/86 5300471 YP_001295223.1 CDS FP0291 NC_009613.1 354088 355326 D Some similarities with predicted phosphohydrolasesCOG1408. Probable transmembrane protein; hypothetical protein 354088..355326 Flavobacterium psychrophilum JIP02/86 5299463 YP_001295224.1 CDS FP0292 NC_009613.1 355376 355672 D Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein 355376..355672 Flavobacterium psychrophilum JIP02/86 5300472 YP_001295225.1 CDS FP0293 NC_009613.1 355683 356312 R Similar to predicted xylanase/chitin deacetylase COG0726; polysaccharide deacetylase complement(355683..356312) Flavobacterium psychrophilum JIP02/86 5298803 YP_001295226.1 CDS FP0294 NC_009613.1 356469 357626 R Similar to hypothetical transport permease YbhR ofE. coli. ABC transporter, permease (IM), DRI-family, YHIH-subfamily, drug export (putative), TC 3.A.1.Y.Z; ABC transporter permease complement(356469..357626) Flavobacterium psychrophilum JIP02/86 5298804 YP_001295227.1 CDS FP0295 NC_009613.1 357623 358621 R ABC transporter, membrane fusion protein (MFP), DRI- family, YHIH-subfamily, drug export (putative). Probablelipoprotein. TC 8.A.1.Y.Z; ABC transporter membrane fusion efflux protein complement(357623..358621) Flavobacterium psychrophilum JIP02/86 5298805 YP_001295228.1 CDS FP0296 NC_009613.1 358630 360009 R Outer Membrane Factor (OMF) Family. TC 1.B.17.Y.Z; outer membrane efflux protein precursor complement(358630..360009) Flavobacterium psychrophilum JIP02/86 5298806 YP_001295229.1 CDS FP0297 NC_009613.1 360153 363383 R Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein complement(360153..363383) Flavobacterium psychrophilum JIP02/86 5298504 YP_001295230.1 CDS fbp NC_009613.1 363659 364666 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(363659..364666) Flavobacterium psychrophilum JIP02/86 5298899 YP_001295231.1 CDS yggG NC_009613.1 364868 365695 D Similar to putative metalloprotease YggG of E. coli that seems to regulate the expression of speB; M48 family metalloprotease YggG 364868..365695 Flavobacterium psychrophilum JIP02/86 5299466 YP_001295232.1 CDS FP0301 NC_009613.1 365658 366179 D Similar to N-acetyltransferase; acetyltransferase 365658..366179 Flavobacterium psychrophilum JIP02/86 5299027 YP_001295233.1 CDS lysC NC_009613.1 366452 367705 D aspartate kinase 366452..367705 Flavobacterium psychrophilum JIP02/86 5298506 YP_001295234.1 CDS FP0303 NC_009613.1 367751 371158 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable exported protein; hypothetical protein 367751..371158 Flavobacterium psychrophilum JIP02/86 5299368 YP_001295235.1 CDS FP0304 NC_009613.1 371228 371827 D hypothetical protein 371228..371827 Flavobacterium psychrophilum JIP02/86 5298507 YP_001295236.1 CDS FP0305 NC_009613.1 371914 373506 D Some similarities with alpha-amylases; glycosidase 371914..373506 Flavobacterium psychrophilum JIP02/86 5300072 YP_001295237.1 CDS FP0306 NC_009613.1 373619 374479 D hypothetical protein 373619..374479 Flavobacterium psychrophilum JIP02/86 5300073 YP_001295238.1 CDS FP0307 NC_009613.1 375104 375244 D hypothetical protein 375104..375244 Flavobacterium psychrophilum JIP02/86 5300074 YP_001295239.1 CDS FP0308 NC_009613.1 375293 376540 D Similar to predicted flavoproteins COG2081; hypothetical protein 375293..376540 Flavobacterium psychrophilum JIP02/86 5300075 YP_001295240.1 CDS FP0309 NC_009613.1 376537 377028 R Similar to tryptophan-rich sensory protein COG3476; integral membrane protein complement(376537..377028) Flavobacterium psychrophilum JIP02/86 5299421 YP_001295241.1 CDS mvaD NC_009613.1 377126 378208 D diphosphomevalonate decarboxylase 377126..378208 Flavobacterium psychrophilum JIP02/86 5299422 YP_001295242.1 CDS FP0311 NC_009613.1 378360 378458 D hypothetical protein 378360..378458 Flavobacterium psychrophilum JIP02/86 5298946 YP_001295243.1 CDS FP0312 NC_009613.1 378458 378679 D hypothetical protein 378458..378679 Flavobacterium psychrophilum JIP02/86 5299423 YP_001295244.1 CDS FP0313 NC_009613.1 378772 379710 D Similar to mevalonate kinase COG1577; mevalonate kinase 378772..379710 Flavobacterium psychrophilum JIP02/86 5299424 YP_001295245.1 CDS FP0314 NC_009613.1 379753 380670 D Similar to 4-hydroxybenzoate polyprenyltransferaseand related prenyltransferases COG0382. Probable transmembrane protein; prenyltransferase family protein 379753..380670 Flavobacterium psychrophilum JIP02/86 5300427 YP_001295246.1 CDS FP0315 NC_009613.1 380811 381719 D Similar to 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases COG1187; pseudouridylate synthase 380811..381719 Flavobacterium psychrophilum JIP02/86 5300428 YP_001295247.1 CDS FP0316 NC_009613.1 381829 382191 D Similar to protein of unknown function; hypothetical protein 381829..382191 Flavobacterium psychrophilum JIP02/86 5300429 YP_001295248.1 CDS FP0317 NC_009613.1 382610 382954 R Some similarities with Helix-turn-helix XRE- familylike proteins (xenobiotic response element family of transcriptional regulators); putative transcriptional regulator complement(382610..382954) Flavobacterium psychrophilum JIP02/86 5300430 YP_001295249.1 CDS FP0318 NC_009613.1 383039 383236 D hypothetical protein 383039..383236 Flavobacterium psychrophilum JIP02/86 5300580 YP_001295250.1 CDS FP0319 NC_009613.1 383595 392900 D Probable exported protein; hypothetical protein 383595..392900 Flavobacterium psychrophilum JIP02/86 5300581 YP_001295251.1 CDS FP0320 NC_009613.1 392952 393866 D Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein 392952..393866 Flavobacterium psychrophilum JIP02/86 5300582 YP_001295252.1 CDS FP0321 NC_009613.1 393877 395811 D Similar to immunogenic 75 kDa protein PG4 of Porphyromonas gingivalis; OmpA family outer membrane protein 393877..395811 Flavobacterium psychrophilum JIP02/86 5300583 YP_001295253.1 CDS accD NC_009613.1 395855 396709 R Long-chain fatty acid biosynthesis; first step. This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA (By similarity); Acetyl-coenzyme A carboxylase carboxyl transferase beta subunit complement(395855..396709) Flavobacterium psychrophilum JIP02/86 5300584 YP_001295254.1 CDS fbaA NC_009613.1 396771 397838 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase complement(396771..397838) Flavobacterium psychrophilum JIP02/86 5299137 YP_001295255.1 CDS FP0324 NC_009613.1 397880 400411 R Similar to outer membrane protein/protective antigen OMA87 COG4775; outer membrane protein precursor complement(397880..400411) Flavobacterium psychrophilum JIP02/86 5299465 YP_001295256.1 CDS FP0325 NC_009613.1 400448 401176 D Similar to rRNA methylases COG0566; tRNA/rRNA methyltransferase 400448..401176 Flavobacterium psychrophilum JIP02/86 5300269 YP_001295257.1 CDS porT NC_009613.1 401173 401883 R Similar to PorT proteina membrane-associated Protein that influences transport/maturation of gingipains and adhesins of Porphyromonas gingivalis. TC 1.B.44.1.1; PorT protein complement(401173..401883) Flavobacterium psychrophilum JIP02/86 5300270 YP_001295258.1 CDS ubiE NC_009613.1 401905 402636 R Ubiquinone biosynthesis and Menaquinone biosynthesis; last step (by similarity); ubiquinone/menaquinone biosynthesis methyltransferase UbiE complement(401905..402636) Flavobacterium psychrophilum JIP02/86 5300180 YP_001295259.1 CDS dfrA NC_009613.1 403331 403819 R Essential step for de novo glycine and purine synthesis, DNA precursor synthesis, and for the conversion of dUMP to dTMP (by similarity); dihydrofolate reductase complement(403331..403819) Flavobacterium psychrophilum JIP02/86 5299815 YP_001295260.1 CDS FP0329 NC_009613.1 403819 404148 R Probable transmembrane protein; hypothetical protein complement(403819..404148) Flavobacterium psychrophilum JIP02/86 5299108 YP_001295261.1 CDS FP0330 NC_009613.1 404213 406897 R Weakly similar to to proteins of unknown function of the CFB phylum. Probable exported protein; hypothetical protein complement(404213..406897) Flavobacterium psychrophilum JIP02/86 5300271 YP_001295262.1 CDS FP0331 NC_009613.1 406902 407648 R Similar to protein of unknown function of Porphyromonas gingivalis; hypothetical protein complement(406902..407648) Flavobacterium psychrophilum JIP02/86 5300272 YP_001295263.1 CDS FP0332 NC_009613.1 407701 407955 R hypothetical protein complement(407701..407955) Flavobacterium psychrophilum JIP02/86 5300273 YP_001295264.1 CDS thyA NC_009613.1 408059 408883 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(408059..408883) Flavobacterium psychrophilum JIP02/86 5300119 YP_001295265.1 CDS FP0334 NC_009613.1 408954 409574 R Similar to uncharacterized conserved protein COG1259; hypothetical protein complement(408954..409574) Flavobacterium psychrophilum JIP02/86 5299727 YP_001295266.1 CDS etfA NC_009613.1 409866 410834 R The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity); electron transfer flavoprotein subunit alpha complement(409866..410834) Flavobacterium psychrophilum JIP02/86 5300120 YP_001295267.1 CDS etfB NC_009613.1 410984 411730 R The electron transfer flavoprotein serves as a specific electron acceptor for other dehydrogenases. It transfers the electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase (ETF dehydrogenase) (By similarity); electron transfer flavoprotein subunit beta complement(410984..411730) Flavobacterium psychrophilum JIP02/86 5299988 YP_001295268.1 CDS pdhB NC_009613.1 411932 412909 D The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity); pyruvate dehydrogenase E1 component, beta subunit 411932..412909 Flavobacterium psychrophilum JIP02/86 5300207 YP_001295269.1 CDS FP0338 NC_009613.1 413037 415529 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 413037..415529 Flavobacterium psychrophilum JIP02/86 5299092 YP_001295270.1 CDS ppa NC_009613.1 415809 416339 D Energy Metabolism; Oxidative phosphorylation; inorganic diphosphatase 415809..416339 Flavobacterium psychrophilum JIP02/86 5300121 YP_001295271.1 CDS FP0340 NC_009613.1 417720 418763 R Similar to uncharacterized proteins, homologs of microcin C7 resistance protein MccF COG1619; putative carboxypeptidase complement(417720..418763) Flavobacterium psychrophilum JIP02/86 5300181 YP_001295272.1 CDS dnaE/dnaQ NC_009613.1 418854 423380 R DNA polymerase III is a complex, multichain enzymeresponsible for most of the replicative synthesis in bacteria (by similarity); DNA polymerase III, alpha and epsilon subunits complement(418854..423380) Flavobacterium psychrophilum JIP02/86 5300122 YP_001295273.1 CDS rpbA NC_009613.1 423557 423958 R Some similarities with RNA-binding proteins (RRM domain) COG0724; putative RNA-binding protein RbpA complement(423557..423958) Flavobacterium psychrophilum JIP02/86 5300745 YP_001295274.1 CDS FP0343 NC_009613.1 424245 424931 R hypothetical protein complement(424245..424931) Flavobacterium psychrophilum JIP02/86 5300920 YP_001295275.1 CDS rpsP NC_009613.1 425119 425661 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 425119..425661 Flavobacterium psychrophilum JIP02/86 5300123 YP_001295276.1 CDS rimM NC_009613.1 425678 426202 D Essential for efficient processing of 16S rRNA. Probably part of the 30S subunit prior to or during the final step in the processing of 16S free 30S ribosomal subunits (by similarity); 16S rRNA processing protein RimM 425678..426202 Flavobacterium psychrophilum JIP02/86 5300253 YP_001295277.1 CDS yfiC NC_009613.1 426332 427036 D Similar to predicted O-methyltransferase COG4123; hypothetical protein 426332..427036 Flavobacterium psychrophilum JIP02/86 5299733 YP_001295278.1 CDS gcdH NC_009613.1 427225 428403 R glutaryl-CoA dehydrogenase complement(427225..428403) Flavobacterium psychrophilum JIP02/86 5300963 YP_001295279.1 CDS gmk NC_009613.1 428537 429112 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(428537..429112) Flavobacterium psychrophilum JIP02/86 5300333 YP_001295280.1 CDS FP0349 NC_009613.1 429207 430052 R Similar to protein of unknown function; hypothetical protein complement(429207..430052) Flavobacterium psychrophilum JIP02/86 5298794 YP_001295281.1 CDS FP0350 NC_009613.1 430100 430960 R Similar to uncharacterized stress-induced protein COG1561; hypothetical protein complement(430100..430960) Flavobacterium psychrophilum JIP02/86 5300245 YP_001295282.1 CDS FP0351 NC_009613.1 431258 432136 R Probable drug/metabolite transporter (DMT) superfamily protein. TC 2.A.7.Y.Z; drug/metabolite-transporting permease complement(431258..432136) Flavobacterium psychrophilum JIP02/86 5300246 YP_001295283.1 CDS FP0352 NC_009613.1 432129 432485 R Reduction of arsenate [As(V)] to arsenite [As(III)] (by similarity); arsenate reductase (glutaredoxin) complement(432129..432485) Flavobacterium psychrophilum JIP02/86 5300247 YP_001295284.1 CDS FP0353 NC_009613.1 432713 433168 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 432713..433168 Flavobacterium psychrophilum JIP02/86 5300248 YP_001295285.1 CDS FP0354 NC_009613.1 433357 434505 D Cys/Met metabolism PLP-dependent enzyme 433357..434505 Flavobacterium psychrophilum JIP02/86 5300249 YP_001295286.1 CDS FP0355 NC_009613.1 434606 434956 R Some weak similarities with uncharacterized protein conserved in bacteria COG2849; hypothetical protein complement(434606..434956) Flavobacterium psychrophilum JIP02/86 5299445 YP_001295287.1 CDS FP0356 NC_009613.1 435165 436376 R Some similarities with protein of unknown functionof the CFB phylum; lipoprotein precursor complement(435165..436376) Flavobacterium psychrophilum JIP02/86 5299446 YP_001295288.1 CDS FP0357 NC_009613.1 436566 439400 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(436566..439400) Flavobacterium psychrophilum JIP02/86 5299447 YP_001295289.1 CDS phoP NC_009613.1 439581 440267 D two-component system response regulatory protein involved in phosphate regulation 439581..440267 Flavobacterium psychrophilum JIP02/86 5299448 YP_001295290.1 CDS phoR NC_009613.1 440268 441332 D Probable transmembrane protein; two-component system sensor histidine kinase involved in phosphate regulation 440268..441332 Flavobacterium psychrophilum JIP02/86 5300306 YP_001295291.1 CDS oprP NC_009613.1 441453 442790 D ABC transporter, porine (POR), phosphate import, TC 1.B.5.1.1; phosphate-selective porine 441453..442790 Flavobacterium psychrophilum JIP02/86 5299542 YP_001295292.1 CDS pstS NC_009613.1 442810 443643 D ABC transporter, binding protein (BP), MOI- family,phosphate import, TC 3.A.1.7.1; ABC-type phosphate-transport system, binding protein precursor component PstS 442810..443643 Flavobacterium psychrophilum JIP02/86 5300160 YP_001295293.1 CDS pstC NC_009613.1 443734 444885 D ABC transporter, permease (IM), MOI-family, phosphate import, TC 3.A.1.7.1; ABC-type phosphate-transport system, permease component PstC 443734..444885 Flavobacterium psychrophilum JIP02/86 5298767 YP_001295294.1 CDS pstA NC_009613.1 444889 445836 D ABC transporter, permease (IM), MOI-family, phosphate import, TC 3.A.1.7.1; ABC-type phosphate-transport system, permease component PstA 444889..445836 Flavobacterium psychrophilum JIP02/86 5298766 YP_001295295.1 CDS pstB NC_009613.1 445931 446689 D ABC transporter, ATP-binding protein (ABC), MOI- family, phosphate import, TC 3.A.1.7.1; ABC-type phosphate-transport system, ATPase component PstB 445931..446689 Flavobacterium psychrophilum JIP02/86 5300643 YP_001295296.1 CDS phoU NC_009613.1 446728 447456 D Unknown function, probably involved in phosphate transport and/or metabolism (by similarity); phosphate transporter PhoU 446728..447456 Flavobacterium psychrophilum JIP02/86 5300644 YP_001295297.1 CDS FP0366 NC_009613.1 447520 448566 R Some similarities with UDP-N-acetylglucosamine:LPSN- acetylglucosamine transferase COG0707; glycosyl transferase complement(447520..448566) Flavobacterium psychrophilum JIP02/86 5299543 YP_001295298.1 CDS FP0367 NC_009613.1 448605 449426 R Similar to uncharacterized conserved protein COG2908. Probable phosphohydrolase; hypothetical protein complement(448605..449426) Flavobacterium psychrophilum JIP02/86 5299449 YP_001295299.1 CDS trmB NC_009613.1 449549 450223 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 449549..450223 Flavobacterium psychrophilum JIP02/86 5298486 YP_001295300.1 CDS FP0369 NC_009613.1 450272 450913 D Some similarities with putative threonine efflux protein of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 450272..450913 Flavobacterium psychrophilum JIP02/86 5300518 YP_001295301.1 CDS ogt2 NC_009613.1 451000 451332 D Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairsalkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. Can also repair O-4-methylthymine (by similarity); methylated-DNA--[protein]-cysteineS-methyltransf erase 451000..451332 Flavobacterium psychrophilum JIP02/86 5298487 YP_001295302.1 CDS FP0371 NC_009613.1 451424 451813 R hypothetical protein complement(451424..451813) Flavobacterium psychrophilum JIP02/86 5300192 YP_001295303.1 CDS FP0372 NC_009613.1 452032 453354 D Cytochromes c (cytC) can be defined as electron- transfer proteins having one or several haem c groups; cytochrome c family protein 452032..453354 Flavobacterium psychrophilum JIP02/86 5298488 YP_001295304.1 CDS hmoA NC_009613.1 453444 456473 D molybdopterin oxidoreductase, iron-sulfur binding subunit 453444..456473 Flavobacterium psychrophilum JIP02/86 5298489 YP_001295305.1 CDS FP0374 NC_009613.1 456567 457973 D molybdopterin oxidoreductase, membranesubunit 456567..457973 Flavobacterium psychrophilum JIP02/86 5298876 YP_001295306.1 CDS FP0375 NC_009613.1 457980 458504 D Similar to protein of unknown function of Leptospira interrogans. Probable transmembrane protein; hypothetical protein 457980..458504 Flavobacterium psychrophilum JIP02/86 5298490 YP_001295307.1 CDS FP0376 NC_009613.1 458513 459058 D Probable lipoprotein. Similar to cytochrome c, mono- and diheme variants COG2010; cytochrome c family protein 458513..459058 Flavobacterium psychrophilum JIP02/86 5299980 YP_001295308.1 CDS FP0377 NC_009613.1 459084 460529 D Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein 459084..460529 Flavobacterium psychrophilum JIP02/86 5299981 YP_001295309.1 CDS FP0378 NC_009613.1 460548 461720 D Similar to heme/copper-type cytochrome/quinol oxidases, subunit 2 COG1622; cytochrome c oxidase, subunit II precursor 460548..461720 Flavobacterium psychrophilum JIP02/86 5299982 YP_001295310.1 CDS FP0379 NC_009613.1 461752 463557 D Similar to heme/copper-type cytochrome/quinol oxidases, subunit 1 COG0843; cytochrome c oxidase, subunit I precursor 461752..463557 Flavobacterium psychrophilum JIP02/86 5299983 YP_001295311.1 CDS FP0380 NC_009613.1 463639 464325 D Some similarities with protein of unknown functionof Flavobacterium psychrophilum; hypothetical protein 463639..464325 Flavobacterium psychrophilum JIP02/86 5299984 YP_001295312.1 CDS FP0381 NC_009613.1 464320 464928 R Probable transmembrane protein; hypothetical protein complement(464320..464928) Flavobacterium psychrophilum JIP02/86 5299249 YP_001295313.1 CDS FP0382 NC_009613.1 465396 467537 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 465396..467537 Flavobacterium psychrophilum JIP02/86 5299250 YP_001295314.1 CDS FP0383 NC_009613.1 467719 468060 R hypothetical protein complement(467719..468060) Flavobacterium psychrophilum JIP02/86 5299251 YP_001295315.1 CDS FP0384 NC_009613.1 468242 468607 R hypothetical protein complement(468242..468607) Flavobacterium psychrophilum JIP02/86 5299252 YP_001295316.1 CDS FP0385 NC_009613.1 470623 471285 D Some weak similarities with DNA-directed RNA polymerase; hypothetical protein 470623..471285 Flavobacterium psychrophilum JIP02/86 5299253 YP_001295317.1 CDS FP0386 NC_009613.1 471379 471663 D hypothetical protein 471379..471663 Flavobacterium psychrophilum JIP02/86 5299671 YP_001295318.1 CDS FP0387 NC_009613.1 471666 473057 D Some similarities with predicted ATPase COG3378; hypothetical protein 471666..473057 Flavobacterium psychrophilum JIP02/86 5299672 YP_001295319.1 CDS FP0388 NC_009613.1 473150 473293 D hypothetical protein 473150..473293 Flavobacterium psychrophilum JIP02/86 5299673 YP_001295320.1 CDS umuC NC_009613.1 473440 474693 D Involved in UV protection and mutation. Essential for induced (or SOS) mutagenesis. May modify the DNA replication machinery to allow bypass synthesis across a damaged template (by similarity); UmuC protein 473440..474693 Flavobacterium psychrophilum JIP02/86 5299674 YP_001295321.1 CDS umuD NC_009613.1 474695 475141 D Involved in UV protection and mutation. Essential for induced (or SOS) mutagenesis. May modify the DNA replication machinery to allow bypass synthesis across a damaged template (by similarity); SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC 474695..475141 Flavobacterium psychrophilum JIP02/86 5299790 YP_001295322.1 CDS FP0391 NC_009613.1 475664 476191 D Probable transmembrane protein. Some weak similarities with proteins of unknown function; hypothetical protein 475664..476191 Flavobacterium psychrophilum JIP02/86 5299791 YP_001295323.1 CDS FP0392 NC_009613.1 476315 480571 D Some similarities with unknown protein of Methanosarcina acetivorans; hypothetical protein 476315..480571 Flavobacterium psychrophilum JIP02/86 5299675 YP_001295324.1 CDS mutS NC_009613.1 481007 483607 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(481007..483607) Flavobacterium psychrophilum JIP02/86 5300829 YP_001295325.1 CDS FP0396 NC_009613.1 483757 484275 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 483757..484275 Flavobacterium psychrophilum JIP02/86 5299212 YP_001295326.1 CDS FP0397 NC_009613.1 484340 484888 D Similar to SpoU, rRNA methylases COG0566; tRNA/rRNA methyltransferase 484340..484888 Flavobacterium psychrophilum JIP02/86 5300830 YP_001295327.1 CDS FP0398 NC_009613.1 484885 486027 R N-terminal region similar to 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase involved in dihydrofolate biosynthesis (first step) and C-terminal region similar to deoxynucleoside kinases COG1428; bifunctional 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/deoxynucleoside kinase complement(484885..486027) Flavobacterium psychrophilum JIP02/86 5300831 YP_001295328.1 CDS sppA NC_009613.1 486151 487914 D Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane (by similarity); protease IV (signal peptide peptidase) 486151..487914 Flavobacterium psychrophilum JIP02/86 5300832 YP_001295329.1 CDS FP0400 NC_009613.1 488084 490666 D Similar to outer membrane assembly protein of the CFB phylum; hypothetical protein 488084..490666 Flavobacterium psychrophilum JIP02/86 5300762 YP_001295330.1 CDS FP0401 NC_009613.1 490926 491720 R Similar to protein of unknown function; hypothetical protein complement(490926..491720) Flavobacterium psychrophilum JIP02/86 5300833 YP_001295331.1 CDS FP0402 NC_009613.1 491811 492422 D Similar to hypothetical protein YqiI of Bacillus subtilis. Similar to N-acetylmuramoyl-L-alanine amidase COG0860; hypothetical protein 491811..492422 Flavobacterium psychrophilum JIP02/86 5299311 YP_001295332.1 CDS FP0403 NC_009613.1 492444 493952 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 492444..493952 Flavobacterium psychrophilum JIP02/86 5299312 YP_001295333.1 CDS kdtA NC_009613.1 493988 495217 R Lipopolysaccharide core biosynthesis; 3-deoxy-D-manno-octulosonic-acid transferase complement(493988..495217) Flavobacterium psychrophilum JIP02/86 5299313 YP_001295334.1 CDS porR NC_009613.1 495363 496496 D Similar to PorR protein of Porphyromonas gingivalis; cell surface polysaccharide biosynthesis protein 495363..496496 Flavobacterium psychrophilum JIP02/86 5300765 YP_001295335.1 CDS galE NC_009613.1 496608 497639 D Galactose metabolism; third step; UDP-glucose 4-epimerase 496608..497639 Flavobacterium psychrophilum JIP02/86 5300179 YP_001295336.1 CDS FP0407 NC_009613.1 497884 498141 R hypothetical protein complement(497884..498141) Flavobacterium psychrophilum JIP02/86 5298512 YP_001295337.1 CDS fabD NC_009613.1 498293 499165 R Involved in fatty acid biosynthesis; malonyl CoA-acyl carrier protein transacylase complement(498293..499165) Flavobacterium psychrophilum JIP02/86 5299314 YP_001295338.1 CDS FP0409 NC_009613.1 499358 499681 R hypothetical protein complement(499358..499681) Flavobacterium psychrophilum JIP02/86 5300211 YP_001295339.1 CDS FP0410 NC_009613.1 499686 499835 R hypothetical protein complement(499686..499835) Flavobacterium psychrophilum JIP02/86 5299315 YP_001295340.1 CDS purT NC_009613.1 499838 500998 R non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 complement(499838..500998) Flavobacterium psychrophilum JIP02/86 5300783 YP_001295341.1 CDS aspC1 NC_009613.1 501166 502353 R Similar to aspartate/tyrosine/aromatic aminotransferase COG0436; aspartate transaminase AspC1 complement(501166..502353) Flavobacterium psychrophilum JIP02/86 5300528 YP_001295342.1 CDS FP0413 NC_009613.1 502421 503518 R Similar to DesD protein of Synechocystis; Fatty acid desaturase complement(502421..503518) Flavobacterium psychrophilum JIP02/86 5298920 YP_001295343.1 CDS gidB NC_009613.1 503624 504253 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 503624..504253 Flavobacterium psychrophilum JIP02/86 5300784 YP_001295344.1 CDS pruA NC_009613.1 504329 505954 R Proline utilization; 1-pyrroline-5-carboxylate dehydrogenase complement(504329..505954) Flavobacterium psychrophilum JIP02/86 5299775 YP_001295345.1 CDS apaG NC_009613.1 506721 507107 R protein associated with Co2+ and Mg2+ efflux; ApaG complement(506721..507107) Flavobacterium psychrophilum JIP02/86 5300640 YP_001295346.1 CDS FP0417 NC_009613.1 507175 508428 R Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis. Probable exported protein; hypothetical protein complement(507175..508428) Flavobacterium psychrophilum JIP02/86 5299225 YP_001295347.1 CDS FP0418 NC_009613.1 508485 509261 R methyltransferase complement(508485..509261) Flavobacterium psychrophilum JIP02/86 5300785 YP_001295348.1 CDS map NC_009613.1 509261 510079 R Removes the amino-terminal methionine from nascentproteins (by similarity); methionine aminopeptidase complement(509261..510079) Flavobacterium psychrophilum JIP02/86 5300786 YP_001295349.1 CDS FP0420 NC_009613.1 510127 511518 R Outer Membrane Factor (OMF) Family. TC 1.B.17.Y.Z; outer membrane efflux protein precursor complement(510127..511518) Flavobacterium psychrophilum JIP02/86 5298603 YP_001295350.1 CDS FP0421 NC_009613.1 511522 512880 R ABC transporter, membrane fusion protein (MFP), DLP- family, export of unknown substrat. Probable transmembrane protein. TC 8.A.1.Y.Z; ABC transporter membrane fusion efflux protein complement(511522..512880) Flavobacterium psychrophilum JIP02/86 5300787 YP_001295351.1 CDS FP0422 NC_009613.1 512886 514547 R ABC transporter, permease and ATP-binding protein (IM-ABC), DLP-family, export of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease/ATPase complement(512886..514547) Flavobacterium psychrophilum JIP02/86 5298555 YP_001295352.1 CDS FP0423 NC_009613.1 514553 515227 R TetR family transcriptional regulator complement(514553..515227) Flavobacterium psychrophilum JIP02/86 5298556 YP_001295353.1 CDS cat2 NC_009613.1 515377 516645 D 4-hydroxybutyrate coenzyme A transferase 515377..516645 Flavobacterium psychrophilum JIP02/86 5298557 YP_001295354.1 CDS FP0425 NC_009613.1 516946 517377 D Probable transmembrane protein; hypothetical protein 516946..517377 Flavobacterium psychrophilum JIP02/86 5300201 YP_001295355.1 CDS FP0426 NC_009613.1 517772 519754 D Similar to cation transport ATPase COG2217; cation-transporting ATPase, P-type 517772..519754 Flavobacterium psychrophilum JIP02/86 5298558 YP_001295356.1 CDS thiS NC_009613.1 520410 520616 D Hydroxyethylthiazole phosphate biosynthesis (by similarity); thiamine biosynthesis protein ThiS 520410..520616 Flavobacterium psychrophilum JIP02/86 5298559 YP_001295357.1 CDS thiC NC_009613.1 520715 522538 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 520715..522538 Flavobacterium psychrophilum JIP02/86 5299725 YP_001295358.1 CDS thiE1 NC_009613.1 522590 523189 D Thiamine metabolism; thiamine-phosphate diphosphorylase 522590..523189 Flavobacterium psychrophilum JIP02/86 5299698 YP_001295359.1 CDS thiD NC_009613.1 523162 523920 D Thiamine metabolism; phosphomethylpyrimidine kinase 523162..523920 Flavobacterium psychrophilum JIP02/86 5299667 YP_001295360.1 CDS thiE2 NC_009613.1 523913 524533 D Thiamine metabolism; thiamine-phosphate diphosphorylase 523913..524533 Flavobacterium psychrophilum JIP02/86 5299666 YP_001295361.1 CDS thiG NC_009613.1 524533 525303 D Required for the synthesis of the thiazole moiety of thiamine (by similarity); thiazole biosynthesis protein ThiG 524533..525303 Flavobacterium psychrophilum JIP02/86 5299668 YP_001295362.1 CDS thiH NC_009613.1 525429 526550 D Required for the synthesis of the thiazole moiety of thiamine (by similarity); thiazole biosynthesis protein ThiH 525429..526550 Flavobacterium psychrophilum JIP02/86 5299670 YP_001295363.1 CDS thiF NC_009613.1 526572 527282 D Similar to dinucleotide-utilizing enzymes involvedin molybdopterin and thiamine biosynthesis family 2 COG0476; molybdopterin and thiamine biosynthesis protein 526572..527282 Flavobacterium psychrophilum JIP02/86 5299723 YP_001295364.1 CDS pyrH NC_009613.1 527356 528063 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 527356..528063 Flavobacterium psychrophilum JIP02/86 5299669 YP_001295365.1 CDS frr NC_009613.1 528109 528672 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 528109..528672 Flavobacterium psychrophilum JIP02/86 5300449 YP_001295366.1 CDS FP0437 NC_009613.1 528832 529914 D Similar to exopolyphosphatase COG0248; exopolyphosphatase 528832..529914 Flavobacterium psychrophilum JIP02/86 5300257 YP_001295367.1 CDS FP0438 NC_009613.1 530103 531344 D Major Facilitator Superfamily (MFS). TC 2.A.1.Y.Z.; major facilitator superfamily permease 530103..531344 Flavobacterium psychrophilum JIP02/86 5299306 YP_001295368.1 CDS FP0439 NC_009613.1 531403 532311 D Probable exported protein similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein 531403..532311 Flavobacterium psychrophilum JIP02/86 5299307 YP_001295369.1 CDS FP0440 NC_009613.1 532407 534659 D Some similarities to protein of unknown function of the CFB phylum; hypothetical protein 532407..534659 Flavobacterium psychrophilum JIP02/86 5299308 YP_001295370.1 CDS FP0441 NC_009613.1 534662 536932 R Monovalent Cation:Proton Antiporter-2 (CPA2) Family. TC 2.A.37.2.Z; Na+/H+ antiporter complement(534662..536932) Flavobacterium psychrophilum JIP02/86 5299309 YP_001295371.1 CDS FP0442 NC_009613.1 537636 538010 D Similar to protein of unknown function of Streptomyces and Xanthomonas; hypothetical protein 537636..538010 Flavobacterium psychrophilum JIP02/86 5299310 YP_001295372.1 CDS FP0443 NC_009613.1 538082 538570 R Similar to acetyltransferase COG0456; acetyltransferase complement(538082..538570) Flavobacterium psychrophilum JIP02/86 5298617 YP_001295373.1 CDS FP0444 NC_009613.1 538580 539824 R Major Facilitator Superfamily (MFS). TC 2.A.1.Y.Z.; major facilitator superfamily tranporter complement(538580..539824) Flavobacterium psychrophilum JIP02/86 5298618 YP_001295374.1 CDS ilvA NC_009613.1 540039 541283 R catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase complement(540039..541283) Flavobacterium psychrophilum JIP02/86 5298619 YP_001295375.1 CDS ilvC NC_009613.1 541280 542326 R ketol-acid reductoisomerase complement(541280..542326) Flavobacterium psychrophilum JIP02/86 5299549 YP_001295376.1 CDS ilvH NC_009613.1 542344 542874 R Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1 and L-valine biosynthesis; L-valine from pyruvate: step 1 (By similarity); acetolactate synthase small subunit complement(542344..542874) Flavobacterium psychrophilum JIP02/86 5299551 YP_001295377.1 CDS ilvB NC_009613.1 542881 544575 R Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1 and L-valine biosynthesis; L-valine from pyruvate: step 1 (By similarity); acetolactate synthase large subunit complement(542881..544575) Flavobacterium psychrophilum JIP02/86 5299559 YP_001295378.1 CDS ilvD NC_009613.1 544593 546269 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(544593..546269) Flavobacterium psychrophilum JIP02/86 5299550 YP_001295379.1 CDS ilvE NC_009613.1 546283 547158 R Acts on leucine, isoleucine and valine (by similarity); branched-chain-amino-acid transaminase complement(546283..547158) Flavobacterium psychrophilum JIP02/86 5299557 YP_001295380.1 CDS FP0451 NC_009613.1 547988 548752 D hypothetical protein 547988..548752 Flavobacterium psychrophilum JIP02/86 5299558 YP_001295381.1 CDS FP0452 NC_009613.1 550391 551014 R Similar to FOG: PAS/PAC domain COG2202; methyl-accepting chemotaxis sensory transducer complement(550391..551014) Flavobacterium psychrophilum JIP02/86 5298620 YP_001295382.1 CDS tsf NC_009613.1 551180 552004 R elongation factor Ts (EF-Ts) complement(551180..552004) Flavobacterium psychrophilum JIP02/86 5298621 YP_001295383.1 CDS rpsB NC_009613.1 552106 552906 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(552106..552906) Flavobacterium psychrophilum JIP02/86 5299826 YP_001295384.1 CDS rpsI NC_009613.1 553060 553446 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(553060..553446) Flavobacterium psychrophilum JIP02/86 5300686 YP_001295385.1 CDS rplM NC_009613.1 553446 553901 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(553446..553901) Flavobacterium psychrophilum JIP02/86 5298590 YP_001295386.1 CDS nrdA NC_009613.1 554701 557121 R Catalyzes the biosynthesis of deoxyribonucleotidesfrom the corresponding ribonucleotides, precursors that are necessary for DNA synthesis (By similarity); ribonucleoside-diphosphate reductase, alpha subunit complement(554701..557121) Flavobacterium psychrophilum JIP02/86 5300753 YP_001295387.1 CDS nrdB NC_009613.1 557458 558435 R Catalyzes the biosynthesis of deoxyribonucleotidesfrom the corresponding ribonucleotides, precursors that are necessary for DNA synthesis (By similarity); ribonucleoside-diphosphate reductase, beta subunit complement(557458..558435) Flavobacterium psychrophilum JIP02/86 5300320 YP_001295388.1 CDS FP0459 NC_009613.1 558683 559252 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(558683..559252) Flavobacterium psychrophilum JIP02/86 5300321 YP_001295389.1 CDS FP0460 NC_009613.1 559478 560056 D The 6 TMS Putative MarC Transporter (MarC) Family.TC 9.B.10.Y.Z; MarC family integral membrane protein precursor 559478..560056 Flavobacterium psychrophilum JIP02/86 5300459 YP_001295390.1 CDS FP0461 NC_009613.1 560095 560298 D Probable transmembrane protein; hypothetical protein 560095..560298 Flavobacterium psychrophilum JIP02/86 5300460 YP_001295391.1 CDS FP0462 NC_009613.1 560298 560906 D putative pyridine nucleotide-disulphide oxidoreductase, class-II family protein 560298..560906 Flavobacterium psychrophilum JIP02/86 5300461 YP_001295392.1 CDS FP0463 NC_009613.1 560952 562526 R The enzyme shows specific recognition of a C- terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr, and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. A typical cleavage is -Ala- Ala-|-Arg-Ala-Ala-Lys-Glu-Asn-Tyr-Ala-Leu-Ala-Ala (by similarity); carboxy-terminal processing protease precursor complement(560952..562526) Flavobacterium psychrophilum JIP02/86 5300462 YP_001295393.1 CDS FP0464 NC_009613.1 562600 563028 R Pyrimidine metabolism; dCMP deaminase complement(562600..563028) Flavobacterium psychrophilum JIP02/86 5300463 YP_001295394.1 CDS FP0465 NC_009613.1 563209 563802 R Probable transmembrane protein; hypothetical protein complement(563209..563802) Flavobacterium psychrophilum JIP02/86 5298702 YP_001295395.1 CDS FP0466 NC_009613.1 563947 564378 D hypothetical protein 563947..564378 Flavobacterium psychrophilum JIP02/86 5298703 YP_001295396.1 CDS uspA NC_009613.1 564424 565248 R N-terminal region similar to universal stress protein UspA and related nucleotide-binding proteins COG0589; universal stress protein UspA complement(564424..565248) Flavobacterium psychrophilum JIP02/86 5298704 YP_001295397.1 CDS FP0468 NC_009613.1 565431 565895 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 565431..565895 Flavobacterium psychrophilum JIP02/86 5299731 YP_001295398.1 CDS nusA NC_009613.1 565911 567152 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 565911..567152 Flavobacterium psychrophilum JIP02/86 5298705 YP_001295399.1 CDS infB NC_009613.1 567206 570109 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 567206..570109 Flavobacterium psychrophilum JIP02/86 5298983 YP_001295400.1 CDS typA NC_009613.1 577893 579689 D Function not known ; probably interacts with the ribosomes in a GTP dependent manner (by similarity); GTP-binding protein TypA 577893..579689 Flavobacterium psychrophilum JIP02/86 5299347 YP_001295401.1 CDS FP0477 NC_009613.1 579783 580634 D Similar to uncharacterized conserved protein COG2996; hypothetical protein 579783..580634 Flavobacterium psychrophilum JIP02/86 5299813 YP_001295402.1 CDS menB NC_009613.1 580774 581613 D Menaquinone biosynthesis; naphthoate synthase 580774..581613 Flavobacterium psychrophilum JIP02/86 5298706 YP_001295403.1 CDS menA NC_009613.1 581705 582634 D Menaquinone biosynthesis; 1,4-dihydroxy-2-naphthoateoctaprenyltransferase 581705..582634 Flavobacterium psychrophilum JIP02/86 5298606 YP_001295404.1 CDS FP0480 NC_009613.1 582657 584030 R Similar to predicted aminopeptidases COG2234; peptidase complement(582657..584030) Flavobacterium psychrophilum JIP02/86 5298605 YP_001295405.1 CDS FP0481 NC_009613.1 584189 585391 R Similar to monofunctional lysine-ketoglutarate reductase of eukaryotes; putative monofunctional lysine-ketoglutarate reductase complement(584189..585391) Flavobacterium psychrophilum JIP02/86 5300778 YP_001295406.1 CDS FP0482 NC_009613.1 585549 586757 D Probably involved in peptidoglycan modification (by similarity); penicillin-binding protein 585549..586757 Flavobacterium psychrophilum JIP02/86 5300779 YP_001295407.1 CDS FP0483 NC_009613.1 587255 588085 R Similar to protein of unknown function; hypothetical protein complement(587255..588085) Flavobacterium psychrophilum JIP02/86 5300780 YP_001295408.1 CDS FP0484 NC_009613.1 588082 588273 R Some similarities with uncharacterized protein HicB encoded in hypervariable junctions of pilus gene clusters COG4226; hypothetical protein complement(588082..588273) Flavobacterium psychrophilum JIP02/86 5300781 YP_001295409.1 CDS FP0485 NC_009613.1 588263 589567 R Similar to protein of unknown function; hypothetical protein complement(588263..589567) Flavobacterium psychrophilum JIP02/86 5300782 YP_001295410.1 CDS FP0486 NC_009613.1 589580 589975 R Some similarities protein of unknown function; hypothetical protein complement(589580..589975) Flavobacterium psychrophilum JIP02/86 5298739 YP_001295411.1 CDS FP0487 NC_009613.1 590015 591952 R The TraG/TraD family are bacterial conjugation proteins. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome; TraG family mobilization protein complement(590015..591952) Flavobacterium psychrophilum JIP02/86 5298740 YP_001295412.1 CDS FP0488 NC_009613.1 593389 593640 R hypothetical protein complement(593389..593640) Flavobacterium psychrophilum JIP02/86 5298741 YP_001295413.1 CDS bmgA NC_009613.1 593637 594695 R Required for the horizontal transfer of genetic information (by similarity); mobilization protein BmgA complement(593637..594695) Flavobacterium psychrophilum JIP02/86 5298742 YP_001295414.1 CDS bmgB NC_009613.1 594697 594996 R mobilization protein BmgB complement(594697..594996) Flavobacterium psychrophilum JIP02/86 5299126 YP_001295415.1 CDS FP0491 NC_009613.1 596363 597532 R Similar to protein of unknown function of Bacteroides; hypothetical protein complement(596363..597532) Flavobacterium psychrophilum JIP02/86 5299127 YP_001295416.1 CDS FP0492 NC_009613.1 597630 597815 R Probable transmembrane protein; hypothetical protein complement(597630..597815) Flavobacterium psychrophilum JIP02/86 5298743 YP_001295417.1 CDS FP0493 NC_009613.1 597872 598156 R hypothetical protein complement(597872..598156) Flavobacterium psychrophilum JIP02/86 5300417 YP_001295418.1 CDS FP0494 NC_009613.1 598258 598899 R Probable transmembrane protein; hypothetical protein complement(598258..598899) Flavobacterium psychrophilum JIP02/86 5300418 YP_001295419.1 CDS FP0495 NC_009613.1 600759 600995 D Some similarities with hypothetical protein of Methanosarcina mazei. Probable transmembrane protein; hypothetical protein 600759..600995 Flavobacterium psychrophilum JIP02/86 5300419 YP_001295420.1 CDS FP0496 NC_009613.1 601082 601315 D hypothetical protein 601082..601315 Flavobacterium psychrophilum JIP02/86 5300420 YP_001295421.1 CDS FP0497 NC_009613.1 601642 602181 D Acetylation of N-terminal amino-acid of ribosomal protein; ribosomal-protein-amino-adic N-acetyltransferase 601642..602181 Flavobacterium psychrophilum JIP02/86 5300421 YP_001295422.1 CDS menC NC_009613.1 602339 603388 R Menaquinone biosynthesis; O-succinylbenzoate synthase complement(602339..603388) Flavobacterium psychrophilum JIP02/86 5299226 YP_001295423.1 CDS FP0499 NC_009613.1 603521 604717 R Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(603521..604717) Flavobacterium psychrophilum JIP02/86 5298607 YP_001295424.1 CDS FP0500 NC_009613.1 606476 607306 R Similar to protein of unknown function of Leptospira interrogans and Cytophaga hutchinsonii; hypothetical protein complement(606476..607306) Flavobacterium psychrophilum JIP02/86 5299227 YP_001295425.1 CDS kdsA NC_009613.1 607329 608147 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(607329..608147) Flavobacterium psychrophilum JIP02/86 5299228 YP_001295426.1 CDS FP0502 NC_009613.1 608293 609879 R Probable major facilitator superfamily (MFS) permease, EmrB/QacA family. Probable drug:H +Antiporter-1 (14 Spanner) (DHA2) family. TC 2.A.1.3.Z; major facilitator superfamily permease complement(608293..609879) Flavobacterium psychrophilum JIP02/86 5300841 YP_001295427.1 CDS FP0503 NC_009613.1 610111 611190 R Membrane Fusion Protein (MFP) Family. Probable transmembrane protein. TC 8.A.1.Y.Z; membrane fusion efflux protein complement(610111..611190) Flavobacterium psychrophilum JIP02/86 5299229 YP_001295428.1 CDS FP0504 NC_009613.1 611204 612517 R Outer Membrane Factor (OMF) Family. TC 1.B.17.Y.Z; outer membrane efflux protein precursor complement(611204..612517) Flavobacterium psychrophilum JIP02/86 5299230 YP_001295429.1 CDS FP0505 NC_009613.1 612507 613130 R Similar to transcriptional regulator COG1309; TetR family transcriptional regulator complement(612507..613130) Flavobacterium psychrophilum JIP02/86 5298545 YP_001295430.1 CDS FP0506 NC_009613.1 613285 614175 R Some weak similarities with predicted metalloprotease of Synechococcus elongatus; metalloprotease complement(613285..614175) Flavobacterium psychrophilum JIP02/86 5298546 YP_001295431.1 CDS trpA NC_009613.1 614419 615180 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(614419..615180) Flavobacterium psychrophilum JIP02/86 5298547 YP_001295432.1 CDS trpB NC_009613.1 615395 616576 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(615395..616576) Flavobacterium psychrophilum JIP02/86 5299913 YP_001295433.1 CDS trpF NC_009613.1 616589 617203 R Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 3; phosphoribosylanthranilate isomerase complement(616589..617203) Flavobacterium psychrophilum JIP02/86 5299914 YP_001295434.1 CDS trpC NC_009613.1 617296 618078 R Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4; indole-3-glycerol phosphate synthase complement(617296..618078) Flavobacterium psychrophilum JIP02/86 5299830 YP_001295435.1 CDS trpD NC_009613.1 618119 619111 R Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2; anthranilate phosphoribosyltransferase complement(618119..619111) Flavobacterium psychrophilum JIP02/86 5299827 YP_001295436.1 CDS pabA NC_009613.1 619181 619753 R Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1 and Cofactor biosynthesis; tetrahydrofolate biosynthesis; 4- aminobenzoate from chorismate: step 1 (by similarity); Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II complement(619181..619753) Flavobacterium psychrophilum JIP02/86 5299828 YP_001295437.1 CDS trpE NC_009613.1 619866 621266 R Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1 (by similarity); anthranilate synthase component I complement(619866..621266) Flavobacterium psychrophilum JIP02/86 5300142 YP_001295438.1 CDS FP0514 NC_009613.1 621542 622108 R Some similarities with uncharacterized conserved protein COG2353; hypothetical protein complement(621542..622108) Flavobacterium psychrophilum JIP02/86 5299829 YP_001295439.1 CDS FP0515 NC_009613.1 622125 622757 R Similar to nitroreductase COG0778; nitroreductase complement(622125..622757) Flavobacterium psychrophilum JIP02/86 5298548 YP_001295440.1 CDS FP0516 NC_009613.1 622760 623212 R Similar to transcriptional regulators COG1846; MarR family transcriptional regulator complement(622760..623212) Flavobacterium psychrophilum JIP02/86 5298549 YP_001295441.1 CDS FP0517 NC_009613.1 623547 623858 D Similar to rhodanese-related sulfurtransferase COG0607; rhodanese-related sulfurtransferase 623547..623858 Flavobacterium psychrophilum JIP02/86 5299998 YP_001295442.1 CDS FP0518 NC_009613.1 623831 625360 D Some similarities with 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases COG0654. Probable transmembrane protein; monooxygenase 623831..625360 Flavobacterium psychrophilum JIP02/86 5299999 YP_001295443.1 CDS ftsE NC_009613.1 625457 626140 R Function not known. Is coded in an operon essential for cell division in E. coli; cell division ATP-binding protein FtsE complement(625457..626140) Flavobacterium psychrophilum JIP02/86 5300000 YP_001295444.1 CDS FP0520 NC_009613.1 626452 629463 D Similar to TPR-domain containing protein of the CFB phylum; TPR domain-containing protein 626452..629463 Flavobacterium psychrophilum JIP02/86 5300185 YP_001295445.1 CDS FP0521 NC_009613.1 629525 631288 D Similar to putative TonB-dependent receptor of the CFB phylum; TonB-dependent outer membrane receptor precursor 629525..631288 Flavobacterium psychrophilum JIP02/86 5300001 YP_001295446.1 CDS phuR NC_009613.1 631373 633580 R Similar to outer membrane receptor proteins, mostly Fe transport COG1629. TC 1.B.14.Y.Z; TonB-dependent outer membrane hemin receptor precursor PhuR complement(631373..633580) Flavobacterium psychrophilum JIP02/86 5300002 YP_001295447.1 CDS FP0523 NC_009613.1 633863 634273 R hypothetical protein complement(633863..634273) Flavobacterium psychrophilum JIP02/86 5299459 YP_001295448.1 CDS asd NC_009613.1 634316 635305 R Amino-acid biosynthesis; L-lysine biosynthesis viaDAP pathway; tetrahydrodipicolinate from L-aspartate: step 2 ; L-methionine biosynthesis; L-homoserine from L- aspartate: step 2 ; L-threonine biosynthesis; L-threonine from L-aspartate: step 2 (by similarity); aspartate-semialdehyde dehydrogenase complement(634316..635305) Flavobacterium psychrophilum JIP02/86 5298636 YP_001295449.1 CDS FP0525 NC_009613.1 635618 636067 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 635618..636067 Flavobacterium psychrophilum JIP02/86 5298916 YP_001295450.1 CDS asnB NC_009613.1 636267 637883 D functions in asparagine biosynthesis; converts glutamine, aspartate, ATP, and water to glutamate, asparagine, pyrophosphate and AMP; asparagine synthetase B 636267..637883 Flavobacterium psychrophilum JIP02/86 5298637 YP_001295451.1 CDS gyrB NC_009613.1 638156 640099 D DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers ofdouble-stranded DNA rings, including catenanes and knotted rings (by similarity); DNA gyrase B subunit 638156..640099 Flavobacterium psychrophilum JIP02/86 5298638 YP_001295452.1 CDS mdh NC_009613.1 640347 641282 D Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 640347..641282 Flavobacterium psychrophilum JIP02/86 5298940 YP_001295453.1 CDS secDF NC_009613.1 641478 644462 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 641478..644462 Flavobacterium psychrophilum JIP02/86 5298604 YP_001295454.1 CDS csaA NC_009613.1 644791 645129 D Similar to protein secretion chaperone CsaA of Bacillus subtilis; protein secretion chaperone CsaA 644791..645129 Flavobacterium psychrophilum JIP02/86 5300127 YP_001295455.1 CDS FP0531 NC_009613.1 645176 645559 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(645176..645559) Flavobacterium psychrophilum JIP02/86 5300935 YP_001295456.1 CDS FP0532 NC_009613.1 645622 647382 R ABC transporter, permease and ATP-binding protein (IM-ABC), DPL-family, LLP-subfamily, drug export, TC 3.A.1.Y.Z; mtultidrug ABC transporter permease/ATPase complement(645622..647382) Flavobacterium psychrophilum JIP02/86 5298639 YP_001295457.1 CDS vdh NC_009613.1 647577 648680 D Highly similar to psychrophilic valine dehydrogenase of Flavobacterium frigidimaris KUC-1; valine dehydrogenase 647577..648680 Flavobacterium psychrophilum JIP02/86 5298640 YP_001295458.1 CDS nusB NC_009613.1 648858 649769 D One of the proteins essential for the formation ofthe RNA polymerase antitermination complex in the presence of lambda phage N protein. However, it is involved in the transcription termination process at certain sites during normal bacterial growth. Binds to the boxA RNA motif (bysimilaritty); N utilization substance protein B 648858..649769 Flavobacterium psychrophilum JIP02/86 5300710 YP_001295459.1 CDS FP0535 NC_009613.1 649780 650295 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 649780..650295 Flavobacterium psychrophilum JIP02/86 5300188 YP_001295460.1 CDS yajC NC_009613.1 650301 650573 D Part of the secDF-yidC-yajC translocase complex. TC : 3.A.5.1.1 ; TC : 9.B.18.1.1; preprotein translocase YajC subunit 650301..650573 Flavobacterium psychrophilum JIP02/86 5300147 YP_001295461.1 CDS pyrF NC_009613.1 651148 651975 D Pyrimidine biosynthesis; sixth (last) step; orotidine-5'-phosphate decarboxylase 651148..651975 Flavobacterium psychrophilum JIP02/86 5300624 YP_001295462.1 CDS FP0538 NC_009613.1 652016 652810 D ABC transporter, binding protein (BP), ISVH-family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter binding protein 652016..652810 Flavobacterium psychrophilum JIP02/86 5300447 YP_001295463.1 CDS FP0539 NC_009613.1 652866 653651 D Similar to predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) COG0596; alpha/beta fold family hydrolase 652866..653651 Flavobacterium psychrophilum JIP02/86 5300148 YP_001295464.1 CDS folC NC_009613.1 654018 655232 R Folate biosynthesis; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(654018..655232) Flavobacterium psychrophilum JIP02/86 5300149 YP_001295465.1 CDS FP0542 NC_009613.1 655426 656142 D Some similarities with biopolymer transport protein COG0811; putative biopolymer transporter 655426..656142 Flavobacterium psychrophilum JIP02/86 5299911 YP_001295466.1 CDS FP0543 NC_009613.1 656120 656521 D Some similarities with biopolymer transport protein COG0848; putative biopolymer transporter 656120..656521 Flavobacterium psychrophilum JIP02/86 5300150 YP_001295467.1 CDS FP0544 NC_009613.1 656847 657803 R Similar to membrane protein TerC, possibly involved in tellurium resistance COG0861; TerC family membrane protein complement(656847..657803) Flavobacterium psychrophilum JIP02/86 5300151 YP_001295468.1 CDS glnA NC_009613.1 658123 660312 D Glutamate metabolism; glutamate--ammonia ligase 658123..660312 Flavobacterium psychrophilum JIP02/86 5299571 YP_001295469.1 CDS FP0546 NC_009613.1 660561 661415 D Similar to outer membrane protein and related peptidoglycan-associated (lipo)proteins COG2885; OmpA family outer membrane protein 660561..661415 Flavobacterium psychrophilum JIP02/86 5300242 YP_001295470.1 CDS FP0547 NC_009613.1 661591 661848 R Probable transmembrane protein; hypothetical protein complement(661591..661848) Flavobacterium psychrophilum JIP02/86 5299572 YP_001295471.1 CDS FP0548 NC_009613.1 662029 662529 D Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor 662029..662529 Flavobacterium psychrophilum JIP02/86 5299573 YP_001295472.1 CDS FP0549 NC_009613.1 662532 663440 D Probable transmembrane protein; hypothetical protein 662532..663440 Flavobacterium psychrophilum JIP02/86 5299574 YP_001295473.1 CDS yfbK NC_009613.1 663477 665372 D Similar to putative outer membrane protein of Bacteroides sp. and to YfbK protein of E. coli; outer membrane protein precursor YfbK 663477..665372 Flavobacterium psychrophilum JIP02/86 5299575 YP_001295474.1 CDS FP0551 NC_009613.1 665790 666710 D Similar to predicted transcriptional regulator COG2378; transcriptional regulator 665790..666710 Flavobacterium psychrophilum JIP02/86 5300962 YP_001295475.1 CDS FP0552 NC_009613.1 666693 667130 R hypothetical protein complement(666693..667130) Flavobacterium psychrophilum JIP02/86 5299115 YP_001295476.1 CDS FP0553 NC_009613.1 667127 667666 R hypothetical protein complement(667127..667666) Flavobacterium psychrophilum JIP02/86 5299116 YP_001295477.1 CDS FP0554 NC_009613.1 667666 668736 R hypothetical protein complement(667666..668736) Flavobacterium psychrophilum JIP02/86 5299117 YP_001295478.1 CDS FP0557 NC_009613.1 671859 672353 R hypothetical protein complement(671859..672353) Flavobacterium psychrophilum JIP02/86 5300600 YP_001295479.1 CDS FP0558 NC_009613.1 672415 674049 R ABC2 type, ART family, REG subfamily protein, probably involved in regulation of translation initiation; translation intitiation regulation protein complement(672415..674049) Flavobacterium psychrophilum JIP02/86 5300601 YP_001295480.1 CDS FP0559 NC_009613.1 674917 675516 R hypothetical protein complement(674917..675516) Flavobacterium psychrophilum JIP02/86 5300602 YP_001295481.1 CDS FP0560 NC_009613.1 675523 675630 R hypothetical protein complement(675523..675630) Flavobacterium psychrophilum JIP02/86 5300603 YP_001295482.1 CDS FP0561 NC_009613.1 675804 676196 R hypothetical protein complement(675804..676196) Flavobacterium psychrophilum JIP02/86 5300604 YP_001295483.1 CDS FP0562 NC_009613.1 676775 677227 R Contains HRDC domain; hypothetical protein complement(676775..677227) Flavobacterium psychrophilum JIP02/86 5298845 YP_001295484.1 CDS FP0563 NC_009613.1 677712 678284 R hypothetical protein complement(677712..678284) Flavobacterium psychrophilum JIP02/86 5298846 YP_001295485.1 CDS FP0564 NC_009613.1 678376 678963 R Similar to protein of unknown function. Possibly involvement in lipid metabolism; hypothetical protein complement(678376..678963) Flavobacterium psychrophilum JIP02/86 5298847 YP_001295486.1 CDS FP0565 NC_009613.1 678960 679772 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(678960..679772) Flavobacterium psychrophilum JIP02/86 5298848 YP_001295487.1 CDS FP0566 NC_009613.1 679901 680773 D Similar to uncharacterized conserved protein COG2326; hypothetical protein 679901..680773 Flavobacterium psychrophilum JIP02/86 5298849 YP_001295488.1 CDS FP0567 NC_009613.1 680986 682458 D Some similarities with protein of unknown functionof Cytophaga hutchinsonii and Nostoc punctiforme. Putative lipoprotein; hypothetical protein 680986..682458 Flavobacterium psychrophilum JIP02/86 5299173 YP_001295489.1 CDS FP0568 NC_009613.1 682563 684368 D Destroys radicals which are normally produced within the cells and which are toxic to biological systems (bysimilarity); cytochrome c peroxidase 682563..684368 Flavobacterium psychrophilum JIP02/86 5299174 YP_001295490.1 CDS norM NC_009613.1 684466 685845 D Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily. TC 2.A.66.1.Z; multidrug resistance protein norM (Na(+)/drug antiporter) 684466..685845 Flavobacterium psychrophilum JIP02/86 5299175 YP_001295491.1 CDS FP0570 NC_009613.1 685981 686889 D Similar to membrane protease subunits, stomatin/prohibitin homologs COG0330. Probable transmembrane protein; hypothetical protein 685981..686889 Flavobacterium psychrophilum JIP02/86 5298853 YP_001295492.1 CDS FP0571 NC_009613.1 686979 687209 D Some weak similarities with protein of unknown function; hypothetical protein 686979..687209 Flavobacterium psychrophilum JIP02/86 5299176 YP_001295493.1 CDS argK NC_009613.1 687212 688303 R The ArgK protein acts as an ATPase enzyme and as akinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems (by similarities); periplasmic transport binding protein kinase ArgK complement(687212..688303) Flavobacterium psychrophilum JIP02/86 5299177 YP_001295494.1 CDS fsr NC_009613.1 688399 689613 D Confers the resistance against fosmidomycin. TC 2.A.1.35.1; major facilitator superfamily permease 688399..689613 Flavobacterium psychrophilum JIP02/86 5300808 YP_001295495.1 CDS glcD NC_009613.1 689812 691215 D Glycolate oxidase; (S)-2-hydroxy-acid oxidase 689812..691215 Flavobacterium psychrophilum JIP02/86 5300259 YP_001295496.1 CDS FP0575 NC_009613.1 691216 691605 R Some similarities with protein of unknown functionof Cytophaga hutchinsonii; hypothetical protein complement(691216..691605) Flavobacterium psychrophilum JIP02/86 5299776 YP_001295497.1 CDS FP0576 NC_009613.1 691701 691811 R hypothetical protein complement(691701..691811) Flavobacterium psychrophilum JIP02/86 5299031 YP_001295498.1 CDS FP0577 NC_009613.1 691980 692318 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 691980..692318 Flavobacterium psychrophilum JIP02/86 5299032 YP_001295499.1 CDS FP0578 NC_009613.1 692442 693248 D Some weak similarities with proteins of unknown function; hypothetical protein 692442..693248 Flavobacterium psychrophilum JIP02/86 5299033 YP_001295500.1 CDS FP0579 NC_009613.1 693519 694562 D Destroys radicals which are normally produced within the cells and which are toxic to biological systems (bysimilarity); cytochrome c peroxidase 693519..694562 Flavobacterium psychrophilum JIP02/86 5299034 YP_001295501.1 CDS FP0580 NC_009613.1 694569 695531 D Some similarities with protein of unknown functionof Cytophaga hutchinsonii; hypothetical protein 694569..695531 Flavobacterium psychrophilum JIP02/86 5299939 YP_001295502.1 CDS secA NC_009613.1 695603 698953 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins; preprotein translocase subunit SecA complement(695603..698953) Flavobacterium psychrophilum JIP02/86 5299940 YP_001295503.1 CDS FP0582 NC_009613.1 699029 699250 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(699029..699250) Flavobacterium psychrophilum JIP02/86 5300126 YP_001295504.1 CDS FP0583 NC_009613.1 699425 699994 R Similar to uncharacterized conserved protein COG2096; hypothetical protein complement(699425..699994) Flavobacterium psychrophilum JIP02/86 5299941 YP_001295505.1 CDS FP0584 NC_009613.1 700078 700764 R ABC transporter, ATP-binding protein (ABC), o228- family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase complement(700078..700764) Flavobacterium psychrophilum JIP02/86 5299942 YP_001295506.1 CDS FP0585 NC_009613.1 700930 701706 R Similar to predicted O-methyltransferase COG4122; hypothetical protein complement(700930..701706) Flavobacterium psychrophilum JIP02/86 5299943 YP_001295507.1 CDS FP0586 NC_009613.1 701805 702152 R hypothetical protein complement(701805..702152) Flavobacterium psychrophilum JIP02/86 5299966 YP_001295508.1 CDS FP0587 NC_009613.1 702251 702625 D Similar to protein of unknown function of Streptomyces and Xanthomonas sp.; hypothetical protein 702251..702625 Flavobacterium psychrophilum JIP02/86 5299967 YP_001295509.1 CDS FP0588 NC_009613.1 702688 704550 R ABC2 type, ART family, REG subfamily protein, probably involved in regulation of translation initiation; translation intitiation regulation protein complement(702688..704550) Flavobacterium psychrophilum JIP02/86 5299968 YP_001295510.1 CDS FP0589 NC_009613.1 705209 706375 D Similar to predicted glycosyltransferases COG1216; glycosyl transferase, group 2 family protein 705209..706375 Flavobacterium psychrophilum JIP02/86 5299969 YP_001295511.1 CDS bfmBB NC_009613.1 706473 707774 D E2 component of branched-chain alpha-keto acid dehydrogenase complex. The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched- chain alpha-ketoacid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3) (by similarity); dihydrolipoyllysine-residue(2-methylpropanoyl)tr ansferase 706473..707774 Flavobacterium psychrophilum JIP02/86 5300645 YP_001295512.1 CDS FP0591 NC_009613.1 707852 708727 R Probable exported protein similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(707852..708727) Flavobacterium psychrophilum JIP02/86 5299273 YP_001295513.1 CDS FP0592 NC_009613.1 708805 709014 R hypothetical protein complement(708805..709014) Flavobacterium psychrophilum JIP02/86 5300646 YP_001295514.1 CDS FP0593 NC_009613.1 709104 709634 D hypothetical protein 709104..709634 Flavobacterium psychrophilum JIP02/86 5300647 YP_001295515.1 CDS FP0594 NC_009613.1 709995 710096 R hypothetical protein complement(709995..710096) Flavobacterium psychrophilum JIP02/86 5300648 YP_001295516.1 CDS FP0595 NC_009613.1 710324 714085 R Some weak similarities with proteins of unknown function; hypothetical protein complement(710324..714085) Flavobacterium psychrophilum JIP02/86 5299537 YP_001295517.1 CDS FP0596 NC_009613.1 714087 714515 R hypothetical protein complement(714087..714515) Flavobacterium psychrophilum JIP02/86 5299538 YP_001295518.1 CDS folE2 NC_009613.1 714689 715360 D Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8- dihydropteridinediphosphate from GTP: step 1 (by similarity); GTP cyclohydrolase I 714689..715360 Flavobacterium psychrophilum JIP02/86 5299539 YP_001295519.1 CDS cysS NC_009613.1 715502 716989 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 715502..716989 Flavobacterium psychrophilum JIP02/86 5299951 YP_001295520.1 CDS FP0599 NC_009613.1 716994 717221 D Similar to protein of unknown function; hypothetical protein 716994..717221 Flavobacterium psychrophilum JIP02/86 5300938 YP_001295521.1 CDS lgt NC_009613.1 717364 718329 D Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins (by similarity); prolipoprotein diacylglyceryl transferase 717364..718329 Flavobacterium psychrophilum JIP02/86 5299540 YP_001295522.1 CDS birA NC_009613.1 718390 719151 R Similar to biotin-(acetyl-CoA carboxylase) ligase COG0340; biotin--[acetyl-CoA-carboxylase] ligase complement(718390..719151) Flavobacterium psychrophilum JIP02/86 5300118 YP_001295523.1 CDS FP0602 NC_009613.1 719213 719584 D Similar to uncharacterized homolog of plant Iojap protein COG0799; hypothetical protein 719213..719584 Flavobacterium psychrophilum JIP02/86 5299277 YP_001295524.1 CDS ftsH NC_009613.1 719596 721527 D Seems to act as an ATP-dependent zinc metallopeptidase. Involved in the degradation of sigma-32. Degrades C-terminal-tagged cytoplasmic proteins. These proteins are tagged with an 11-amino-acid nonpolar destabilizing tail via a mechanism involving the 10SA (ssrA) stable RNA (by similarity); cell division protein FtsH 719596..721527 Flavobacterium psychrophilum JIP02/86 5299541 YP_001295525.1 CDS FP0604 NC_009613.1 721636 722241 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 721636..722241 Flavobacterium psychrophilum JIP02/86 5300186 YP_001295526.1 CDS cdsA NC_009613.1 722243 723049 D Phospholipid biosynthesis; phosphatidate cytidylyltransferase 722243..723049 Flavobacterium psychrophilum JIP02/86 5298836 YP_001295527.1 CDS psd NC_009613.1 723039 723689 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 723039..723689 Flavobacterium psychrophilum JIP02/86 5300367 YP_001295528.1 CDS FP0607 NC_009613.1 723690 723959 D Similar to eukaryotic Acyl CoA binding protein COG4281; acyl CoA-binding protein 723690..723959 Flavobacterium psychrophilum JIP02/86 5300641 YP_001295529.1 CDS FP0608 NC_009613.1 723963 724829 D Central region similar to superoxide dismutase COG0605; superoxide dismutase 723963..724829 Flavobacterium psychrophilum JIP02/86 5298837 YP_001295530.1 CDS FP0609 NC_009613.1 725841 727199 D Some weak similarities with putative periplasmic protease COG0793; hypothetical protein 725841..727199 Flavobacterium psychrophilum JIP02/86 5298838 YP_001295531.1 CDS tgt NC_009613.1 727433 728563 D queuine tRNA-ribosyltransferase 727433..728563 Flavobacterium psychrophilum JIP02/86 5298839 YP_001295532.1 CDS FP0611 NC_009613.1 728637 729722 D Similar to predicted permeases COG0795. Probable transmembrane protein; hypothetical protein 728637..729722 Flavobacterium psychrophilum JIP02/86 5299697 YP_001295533.1 CDS FP0612 NC_009613.1 729709 730587 D Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein 729709..730587 Flavobacterium psychrophilum JIP02/86 5300635 YP_001295534.1 CDS accA NC_009613.1 730783 731736 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 730783..731736 Flavobacterium psychrophilum JIP02/86 5300636 YP_001295535.1 CDS dnaB NC_009613.1 731890 733437 D Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding,DNA binding, and interaction with dnaC protein, primase, and other prepriming proteins (by similarity); replicative DNA helicase 731890..733437 Flavobacterium psychrophilum JIP02/86 5299585 YP_001295536.1 CDS trxB1 NC_009613.1 733540 734487 D thioredoxin-disulfide reductase 733540..734487 Flavobacterium psychrophilum JIP02/86 5298964 YP_001295537.1 CDS FP0616 NC_009613.1 735093 736979 R Some similarities with protein of unknown functionof Flavobacterium psychrophilum; hypothetical protein complement(735093..736979) Flavobacterium psychrophilum JIP02/86 5299824 YP_001295538.1 CDS FP0617 NC_009613.1 737272 739464 D Some weak similarities with putative YapH protein of Bdellovibrio bacteriovorus; hypothetical protein 737272..739464 Flavobacterium psychrophilum JIP02/86 5300637 YP_001295539.1 CDS FP0618 NC_009613.1 740402 741265 R Similar to predicted membrane protein COG3781; hypothetical protein complement(740402..741265) Flavobacterium psychrophilum JIP02/86 5300638 YP_001295540.1 CDS kup NC_009613.1 741276 743240 R Transport of potassium into the cell. TC : 2.A.72.Y.Z (By similarity); potassium transport system protein Kup complement(741276..743240) Flavobacterium psychrophilum JIP02/86 5300639 YP_001295541.1 CDS FP0620 NC_009613.1 743363 744415 D Putative lipoprotein, similar to putative oxidoreductase of Streptomyces sp.; hypothetical protein 743363..744415 Flavobacterium psychrophilum JIP02/86 5300768 YP_001295542.1 CDS FP0621 NC_009613.1 744568 745026 R Probable exported protein; hypothetical protein complement(744568..745026) Flavobacterium psychrophilum JIP02/86 5299639 YP_001295543.1 CDS FP0622 NC_009613.1 745037 745417 R Probable transmembrane protein; hypothetical protein complement(745037..745417) Flavobacterium psychrophilum JIP02/86 5299640 YP_001295544.1 CDS FP0623 NC_009613.1 745448 745990 R Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor complement(745448..745990) Flavobacterium psychrophilum JIP02/86 5299641 YP_001295545.1 CDS FP0624 NC_009613.1 746285 746935 D Similar to predicted phosphatase/phosphohexomutaseCOG0637; phosphatase/phosphohexomutase 746285..746935 Flavobacterium psychrophilum JIP02/86 5299642 YP_001295546.1 CDS FP0625 NC_009613.1 747673 748365 R hypothetical protein complement(747673..748365) Flavobacterium psychrophilum JIP02/86 5299325 YP_001295547.1 CDS FP0626 NC_009613.1 748362 748913 R hypothetical protein complement(748362..748913) Flavobacterium psychrophilum JIP02/86 5299326 YP_001295548.1 CDS FP0627 NC_009613.1 748918 749253 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(748918..749253) Flavobacterium psychrophilum JIP02/86 5299327 YP_001295549.1 CDS FP0628 NC_009613.1 749361 750602 R hypothetical protein complement(749361..750602) Flavobacterium psychrophilum JIP02/86 5299328 YP_001295550.1 CDS FP0629 NC_009613.1 750621 750779 R hypothetical protein complement(750621..750779) Flavobacterium psychrophilum JIP02/86 5299329 YP_001295551.1 CDS trmE NC_009613.1 752716 754104 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(752716..754104) Flavobacterium psychrophilum JIP02/86 5298670 YP_001295552.1 CDS FP0631 NC_009613.1 754435 755208 R Similar to protein of unknown function; hypothetical protein complement(754435..755208) Flavobacterium psychrophilum JIP02/86 5300520 YP_001295553.1 CDS FP0632 NC_009613.1 755339 756001 R ABC transporter, ATP-binding protein (ABC), o228- family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase complement(755339..756001) Flavobacterium psychrophilum JIP02/86 5298671 YP_001295554.1 CDS mrsA NC_009613.1 756112 756750 D Start doubtful, the first ATG was choosen. Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversibleoxidation-reduction of methionine sulfoxide in proteins to methionine (by similarity); protein-methionine-S-oxide reductase MsrA 756112..756750 Flavobacterium psychrophilum JIP02/86 5298672 YP_001295555.1 CDS folE1 NC_009613.1 756753 757424 D Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8- dihydropteridinediphosphate from GTP: step 1 (by similarity); GTP cyclohydrolase I 756753..757424 Flavobacterium psychrophilum JIP02/86 5299208 YP_001295556.1 CDS FP0635 NC_009613.1 757472 757783 D Similar to protein of unknown function of Methanococcus maripaludis; hypothetical protein 757472..757783 Flavobacterium psychrophilum JIP02/86 5299950 YP_001295557.1 CDS FP0636 NC_009613.1 757813 758118 R hypothetical protein complement(757813..758118) Flavobacterium psychrophilum JIP02/86 5298673 YP_001295558.1 CDS FP0637 NC_009613.1 758149 758574 R hypothetical protein complement(758149..758574) Flavobacterium psychrophilum JIP02/86 5299817 YP_001295559.1 CDS FP0638 NC_009613.1 758899 759549 R Some similarities with protein of unknown functionof Pirellula sp.; hypothetical protein complement(758899..759549) Flavobacterium psychrophilum JIP02/86 5299818 YP_001295560.1 CDS serA NC_009613.1 759598 760557 R Serine biosynthesis; first step; phosphoglycerate dehydrogenase complement(759598..760557) Flavobacterium psychrophilum JIP02/86 5299819 YP_001295561.1 CDS serC NC_009613.1 760610 761680 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(760610..761680) Flavobacterium psychrophilum JIP02/86 5299834 YP_001295562.1 CDS FP0641 NC_009613.1 761823 762881 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(761823..762881) Flavobacterium psychrophilum JIP02/86 5299835 YP_001295563.1 CDS fdx1 NC_009613.1 762983 763333 D Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clustersin a wide variety of iron-sulfur proteins (by similarity); ferredoxin 762983..763333 Flavobacterium psychrophilum JIP02/86 5299820 YP_001295564.1 CDS FP0643 NC_009613.1 763438 764598 D Some weak similarities with protein of unknown function of Flavobacterium psychrophilum; hypothetical protein 763438..764598 Flavobacterium psychrophilum JIP02/86 5299467 YP_001295565.1 CDS engD NC_009613.1 764824 765918 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 764824..765918 Flavobacterium psychrophilum JIP02/86 5299821 YP_001295566.1 CDS FP0645 NC_009613.1 766236 768764 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.1.Z; TonB-dependent outer membrane siderophore receptor precursor complement(766236..768764) Flavobacterium psychrophilum JIP02/86 5299985 YP_001295567.1 CDS parE NC_009613.1 768981 770837 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 768981..770837 Flavobacterium psychrophilum JIP02/86 5300576 YP_001295568.1 CDS FP0647 NC_009613.1 770850 771260 D Putative nucleotidyltransferase; hypothetical protein 770850..771260 Flavobacterium psychrophilum JIP02/86 5298857 YP_001295569.1 CDS FP0648 NC_009613.1 771260 771562 D Putative nucleotidyltransferase; hypothetical protein 771260..771562 Flavobacterium psychrophilum JIP02/86 5300577 YP_001295570.1 CDS parC NC_009613.1 771579 774299 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 771579..774299 Flavobacterium psychrophilum JIP02/86 5300578 YP_001295571.1 CDS FP0650 NC_009613.1 775067 776095 R Some weak similarities with predicted aminopeptidases COG2234; aminopeptidase complement(775067..776095) Flavobacterium psychrophilum JIP02/86 5298856 YP_001295572.1 CDS FP0651 NC_009613.1 776158 777201 R 23S rRNA pseudouridine synthase complement(776158..777201) Flavobacterium psychrophilum JIP02/86 5300579 YP_001295573.1 CDS FP0652 NC_009613.1 777201 777815 R Similar to protein of unknown function of Cytophaga hutchinsonii and Bacteroides thetaiotaomicron; hypothetical protein complement(777201..777815) Flavobacterium psychrophilum JIP02/86 5300687 YP_001295574.1 CDS ddl NC_009613.1 777908 778894 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 777908..778894 Flavobacterium psychrophilum JIP02/86 5300688 YP_001295575.1 CDS coaD NC_009613.1 778967 779422 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 778967..779422 Flavobacterium psychrophilum JIP02/86 5300912 YP_001295576.1 CDS FP0656 NC_009613.1 779703 780419 R Similar uncharacterized proteins, LmbE homologs COG2120; hypothetical protein complement(779703..780419) Flavobacterium psychrophilum JIP02/86 5298772 YP_001295577.1 CDS FP0657 NC_009613.1 780660 781109 D hypothetical protein 780660..781109 Flavobacterium psychrophilum JIP02/86 5299214 YP_001295578.1 CDS menF NC_009613.1 781180 782241 R Menaquinone biosynthesis; isochorismate synthase complement(781180..782241) Flavobacterium psychrophilum JIP02/86 5300690 YP_001295579.1 CDS FP0659 NC_009613.1 782249 782677 R Similar to uncharacterized protein, possibly involved in aromatic compounds catabolism COG2050; hypothetical protein complement(782249..782677) Flavobacterium psychrophilum JIP02/86 5299056 YP_001295580.1 CDS FP0660 NC_009613.1 782931 784472 D Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein 782931..784472 Flavobacterium psychrophilum JIP02/86 5300691 YP_001295581.1 CDS dbpA NC_009613.1 784525 785871 R Has a helix-destabilizing activity, which is not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in ribosome assembly, specifically in the assembly process of the active center of 50S ribosomal subunits (by similarity); ATP-dependent RNA helicase DbpA complement(784525..785871) Flavobacterium psychrophilum JIP02/86 5299874 YP_001295582.1 CDS FP0662 NC_009613.1 786047 786478 R Similar to protein of unknown function of Cytophaga hutchinsonii. Nudix family protein; hypothetical protein complement(786047..786478) Flavobacterium psychrophilum JIP02/86 5300729 YP_001295583.1 CDS pyrE NC_009613.1 786660 787307 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 786660..787307 Flavobacterium psychrophilum JIP02/86 5299875 YP_001295584.1 CDS FP0664 NC_009613.1 787377 787769 D hypothetical protein 787377..787769 Flavobacterium psychrophilum JIP02/86 5300446 YP_001295585.1 CDS FP0665 NC_009613.1 787829 788047 R hypothetical protein complement(787829..788047) Flavobacterium psychrophilum JIP02/86 5299876 YP_001295586.1 CDS FP0666 NC_009613.1 788090 788743 R Similar to DEAD-box helicases. A diverse family ofproteins involved in ATP-dependent RNA unwinding; DEAD-box ATP dependent DNA helicase complement(788090..788743) Flavobacterium psychrophilum JIP02/86 5299877 YP_001295587.1 CDS FP0667 NC_009613.1 788821 789984 R Similar to response regulator containing CheY- likereceiver, AAA-type ATPase, and DNA-binding domains COG2204; sigma-54 dependent two-component system response regulatory protein complement(788821..789984) Flavobacterium psychrophilum JIP02/86 5299837 YP_001295588.1 CDS natB NC_009613.1 790182 791486 R ABC transporter, permease (IM), DRI-family, DRB- subfamily, Na(+) export, TC 3.A.1.115.1; sodium ABC transporter permease complement(790182..791486) Flavobacterium psychrophilum JIP02/86 5299838 YP_001295589.1 CDS natA NC_009613.1 791574 792494 R ABC transporter, ATP-binding protein (ABC), DRI- family, DRB-subfamily, Na(+) export, TC 3.A.1.115.1; sodium ABC transporter ATPase complement(791574..792494) Flavobacterium psychrophilum JIP02/86 5300193 YP_001295590.1 CDS dnaJ NC_009613.1 792658 793782 R Interacts with dnaK to disassemble a protein complex at the phage lambda origin of replication. Stimulates, jointly with grpE, the ATPase activity of dnaK. Induction by heat shock (by similarity); chaperone protein DnaJ complement(792658..793782) Flavobacterium psychrophilum JIP02/86 5298950 YP_001295591.1 CDS grpE NC_009613.1 793841 794413 R Start doubtful, the first ATG was choosen. Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress- denatured proteins, in association with dnaK and grpE. It is the nucleotide exchange factor for dnaK and may function as a thermosensor (by similarity); chaperone protein GrpE complement(793841..794413) Flavobacterium psychrophilum JIP02/86 5300747 YP_001295592.1 CDS FP0672 NC_009613.1 794610 795518 R Similar to nucleoside-diphosphate-sugar epimerasesCOG1090, COG0451, COG0702; nucleoside-diphosphate sugar epimerase complement(794610..795518) Flavobacterium psychrophilum JIP02/86 5299332 YP_001295593.1 CDS FP0673 NC_009613.1 795602 796054 R Similar to protein of unknown function of Vibrio sp.; hypothetical protein complement(795602..796054) Flavobacterium psychrophilum JIP02/86 5299839 YP_001295594.1 CDS FP0674 NC_009613.1 796245 796709 D Similar to uncharacterized protein conserved in bacteria COG3296. Probable transmembrane protein; hypothetical protein 796245..796709 Flavobacterium psychrophilum JIP02/86 5299840 YP_001295595.1 CDS FP0675 NC_009613.1 796937 797266 D Similar to predicted transcriptional regulators COG1695; PadR family transcriptional regulator 796937..797266 Flavobacterium psychrophilum JIP02/86 5299841 YP_001295596.1 CDS FP0676 NC_009613.1 797272 799053 D N-terminal region similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein 797272..799053 Flavobacterium psychrophilum JIP02/86 5299757 YP_001295597.1 CDS FP0677 NC_009613.1 799056 799796 D Similar to putative lipoproteins; lipoprotein 799056..799796 Flavobacterium psychrophilum JIP02/86 5299758 YP_001295598.1 CDS FP0678 NC_009613.1 799871 800707 D Weakly similar to to protein of unknown function of Dehalococcoides sp.; hypothetical protein 799871..800707 Flavobacterium psychrophilum JIP02/86 5299759 YP_001295599.1 CDS FP0679 NC_009613.1 800783 801262 R Similar to uncharacterized protein conserved in bacteria COG3708; hypothetical protein complement(800783..801262) Flavobacterium psychrophilum JIP02/86 5299760 YP_001295600.1 CDS fahA NC_009613.1 801573 802856 R Similar to 2-keto-4-pentenoate hydratase/2-oxohepta- 3-ene-1,7-dioic acid hydratase (catechol pathway) COG0179; putative fumarylacetoacetase complement(801573..802856) Flavobacterium psychrophilum JIP02/86 5300236 YP_001295601.1 CDS glyA NC_009613.1 802993 804267 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 802993..804267 Flavobacterium psychrophilum JIP02/86 5299464 YP_001295602.1 CDS tktN NC_009613.1 805633 806478 D Pentose phosphate pathway; transketolase, N-terminal subunit 805633..806478 Flavobacterium psychrophilum JIP02/86 5298791 YP_001295603.1 CDS tktC NC_009613.1 806559 807512 D Pentose phosphate pathway; transketolase, C-terminal subunit 806559..807512 Flavobacterium psychrophilum JIP02/86 5298677 YP_001295604.1 CDS FP0684 NC_009613.1 807652 808503 D Similar to outer membrane protein and related peptidoglycan-associated (lipo)proteins COG2885; OmpA family outer membrane protein 807652..808503 Flavobacterium psychrophilum JIP02/86 5298676 YP_001295605.1 CDS purM NC_009613.1 808575 809753 D De novo purine biosynthesis; fifth step; phosphoribosylformylglycinamidine cyclo-ligase 808575..809753 Flavobacterium psychrophilum JIP02/86 5300237 YP_001295606.1 CDS FP0686 NC_009613.1 810000 810356 D Some similarities with protein of unknown functionof Pirellula sp. 1; hypothetical protein 810000..810356 Flavobacterium psychrophilum JIP02/86 5300025 YP_001295607.1 CDS FP0687 NC_009613.1 810349 810972 D Similar to acetyltransferases, including N- acetylases of ribosomal proteins COG1670; acetyltransferase 810349..810972 Flavobacterium psychrophilum JIP02/86 5300238 YP_001295608.1 CDS FP0688 NC_009613.1 811719 818651 D Probable exported protein; hypothetical protein 811719..818651 Flavobacterium psychrophilum JIP02/86 5300239 YP_001295609.1 CDS FP0689 NC_009613.1 818663 819604 D Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein 818663..819604 Flavobacterium psychrophilum JIP02/86 5299316 YP_001295610.1 CDS FP0690 NC_009613.1 819995 822367 D Similar to outer membrane receptor proteins, mostly Fe transport COG1629. TC 1.B.14.Y.Z; outer membrane protein precursor 819995..822367 Flavobacterium psychrophilum JIP02/86 5299317 YP_001295611.1 CDS FP0691 NC_009613.1 822372 823199 D Similar to protein of unknown function of Cytophaga hutchinsonii; lipoprotein precursor 822372..823199 Flavobacterium psychrophilum JIP02/86 5299318 YP_001295612.1 CDS FP0692 NC_009613.1 823293 823436 D hypothetical protein 823293..823436 Flavobacterium psychrophilum JIP02/86 5299319 YP_001295613.1 CDS FP0694 NC_009613.1 823635 824207 D Similar to uncharacterized low-complexity proteinsCOG1357; hypothetical protein 823635..824207 Flavobacterium psychrophilum JIP02/86 5299749 YP_001295614.1 CDS purL NC_009613.1 824434 828087 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(824434..828087) Flavobacterium psychrophilum JIP02/86 5298907 YP_001295615.1 CDS FP0696 NC_009613.1 828202 829299 R Some similarities with Endonuclease I COG2356; extracellular ribonuclease precursor complement(828202..829299) Flavobacterium psychrophilum JIP02/86 5300024 YP_001295616.1 CDS rsmB NC_009613.1 829420 830634 R rRNA (cytosine-C(5)-)-methyltransferase Sun; ribosomal RNA small subunit methyltransferase B complement(829420..830634) Flavobacterium psychrophilum JIP02/86 5298908 YP_001295617.1 CDS FP0698 NC_009613.1 830742 831377 R Probable transmembrane protein; hypothetical protein complement(830742..831377) Flavobacterium psychrophilum JIP02/86 5298780 YP_001295618.1 CDS FP0699 NC_009613.1 831383 832417 R Similar to protein of unknown function of Leptospira interrogans and Vibrio sp.; hypothetical protein complement(831383..832417) Flavobacterium psychrophilum JIP02/86 5298909 YP_001295619.1 CDS FP0700 NC_009613.1 832417 833127 R Similar to uncharacterized conserved protein COG3332; hypothetical protein complement(832417..833127) Flavobacterium psychrophilum JIP02/86 5298910 YP_001295620.1 CDS FP0701 NC_009613.1 833115 833603 R Similar to protein of unknown function of Leptospira interrogans and Vibrio sp.; hypothetical protein complement(833115..833603) Flavobacterium psychrophilum JIP02/86 5300605 YP_001295621.1 CDS FP0702 NC_009613.1 833607 834206 R Similar to peroxiredoxin COG1225. Peroxiredoxins are a ubiquitous family of antioxidant proteins; peroxiredoxin complement(833607..834206) Flavobacterium psychrophilum JIP02/86 5300606 YP_001295622.1 CDS FP0703 NC_009613.1 834284 834961 R Similar to cAMP-binding proteins - catabolite geneactivator and regulatory subunit of cAMP-dependent protein kinases COG0664; Crp/Fnr family transcriptional regulator complement(834284..834961) Flavobacterium psychrophilum JIP02/86 5300607 YP_001295623.1 CDS FP0704 NC_009613.1 835093 836019 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(835093..836019) Flavobacterium psychrophilum JIP02/86 5300608 YP_001295624.1 CDS FP0705 NC_009613.1 836034 836531 R hypothetical protein complement(836034..836531) Flavobacterium psychrophilum JIP02/86 5300609 YP_001295625.1 CDS lpdA2 NC_009613.1 836755 838143 D Catalyzes the oxidation of dihydrolipoamide to lipoamide. Component of two multienzyme complexes: pyruvate dehydrogenase complex and oxoglutarate dehydrogenase complex.; dihydrolipoyl dehydrogenase 836755..838143 Flavobacterium psychrophilum JIP02/86 5300706 YP_001295626.1 CDS FP0707 NC_009613.1 838368 840278 D Similar to uncharacterized conserved protein COG2268; hypothetical protein 838368..840278 Flavobacterium psychrophilum JIP02/86 5300296 YP_001295627.1 CDS FP0708 NC_009613.1 840397 841524 R Belongs to the class-V pyridoxal-phosphate- dependent aminotransferase family. Biosynthesis of Fe-S cluster; cysteine desulfurase complement(840397..841524) Flavobacterium psychrophilum JIP02/86 5300707 YP_001295628.1 CDS FP0709 NC_009613.1 841590 842084 D Similar to predicted phosphoesterase COG0622; putative phosphoesterase 841590..842084 Flavobacterium psychrophilum JIP02/86 5300708 YP_001295629.1 CDS FP0710 NC_009613.1 842160 843941 R two-component system sensor histidine kinase complement(842160..843941) Flavobacterium psychrophilum JIP02/86 5300709 YP_001295630.1 CDS FP0711 NC_009613.1 844153 844452 R hypothetical protein complement(844153..844452) Flavobacterium psychrophilum JIP02/86 5300769 YP_001295631.1 CDS FP0712 NC_009613.1 844728 845162 R hypothetical protein complement(844728..845162) Flavobacterium psychrophilum JIP02/86 5300770 YP_001295632.1 CDS FP0713 NC_009613.1 845438 846505 R Similar to uncharacterized conserved protein COG4748; hypothetical protein complement(845438..846505) Flavobacterium psychrophilum JIP02/86 5300771 YP_001295633.1 CDS FP0714 NC_009613.1 846804 847049 R hypothetical protein complement(846804..847049) Flavobacterium psychrophilum JIP02/86 5300772 YP_001295634.1 CDS FP0715 NC_009613.1 847273 847941 R Two-component system response regulatory protein containing receiver domain and LuxR-type DNA-binding domain; two-component system response regulatory protein complement(847273..847941) Flavobacterium psychrophilum JIP02/86 5300773 YP_001295635.1 CDS FP0716 NC_009613.1 848190 848600 R Similar to protein of unknown function of Cytophaga hutchinsonii and Bacteroides thetaiotaomicron. Probable transmembrane protein; hypothetical protein complement(848190..848600) Flavobacterium psychrophilum JIP02/86 5300886 YP_001295636.1 CDS rho NC_009613.1 848777 850528 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 848777..850528 Flavobacterium psychrophilum JIP02/86 5300887 YP_001295637.1 CDS FP0718 NC_009613.1 850919 851677 R Similar to uncharacterized protein conserved in bacteria COG3022; hypothetical protein complement(850919..851677) Flavobacterium psychrophilum JIP02/86 5300101 YP_001295638.1 CDS FP0719 NC_009613.1 851795 854197 R N-terminal region similar to alpha subunit COG1071and C-terminal region similar to beta subunit COG0022 of pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type; putative pyruvate/branched-chain alpha-keto acid dehydrogenase (E1) component, alpha and beta subunits complement(851795..854197) Flavobacterium psychrophilum JIP02/86 5300888 YP_001295639.1 CDS FP0720 NC_009613.1 854382 857147 R Some weak similarities with putative aminopeptidases; hypothetical protein complement(854382..857147) Flavobacterium psychrophilum JIP02/86 5300889 YP_001295640.1 CDS FP0721 NC_009613.1 857723 859696 D Central region similar to ribonuclease; ribonuclease 857723..859696 Flavobacterium psychrophilum JIP02/86 5299878 YP_001295641.1 CDS FP0722 NC_009613.1 860094 860954 R Similar to membrane protein TerC, possibly involved in tellurium resistance COG0861; TerC family membrane protein complement(860094..860954) Flavobacterium psychrophilum JIP02/86 5299879 YP_001295642.1 CDS FP0723 NC_009613.1 860995 861366 R Putative lipoprotein; hypothetical protein complement(860995..861366) Flavobacterium psychrophilum JIP02/86 5299880 YP_001295643.1 CDS FP0724 NC_009613.1 861615 861842 R Probable transmembrane protein; hypothetical protein complement(861615..861842) Flavobacterium psychrophilum JIP02/86 5299881 YP_001295644.1 CDS murQ NC_009613.1 861949 862758 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid-6-phosphate etherase complement(861949..862758) Flavobacterium psychrophilum JIP02/86 5299882 YP_001295645.1 CDS FP0726 NC_009613.1 862798 863178 R Similar to protein of unknown function YjqA of Bacillus subtilis; hypothetical protein complement(862798..863178) Flavobacterium psychrophilum JIP02/86 5299870 YP_001295646.1 CDS FP0727 NC_009613.1 863227 863895 R Similar to predicted divalent heavy-metal cations transporter of Cytophaga hutchinsonii; hypothetical protein complement(863227..863895) Flavobacterium psychrophilum JIP02/86 5299871 YP_001295647.1 CDS FP0728 NC_009613.1 863985 864749 R Similar to putative methyltransferases; putative methyltransferase complement(863985..864749) Flavobacterium psychrophilum JIP02/86 5299872 YP_001295648.1 CDS FP0729 NC_009613.1 864878 866050 D Similar to predicted N6-adenine-specific DNA methylase COG0116; modification methyltransferase 864878..866050 Flavobacterium psychrophilum JIP02/86 5299873 YP_001295649.1 CDS FP0730 NC_009613.1 866117 866350 D Probable transmembrane protein; hypothetical protein 866117..866350 Flavobacterium psychrophilum JIP02/86 5299846 YP_001295650.1 CDS FP0731 NC_009613.1 866517 866969 R hypothetical protein complement(866517..866969) Flavobacterium psychrophilum JIP02/86 5299847 YP_001295651.1 CDS FP0732 NC_009613.1 867200 867937 R Some similarities with protein of unknown functionof Bacteroides sp. Probable exported protein; hypothetical protein complement(867200..867937) Flavobacterium psychrophilum JIP02/86 5299848 YP_001295652.1 CDS FP0733 NC_009613.1 868068 868574 R Putative lipoprotein; hypothetical protein complement(868068..868574) Flavobacterium psychrophilum JIP02/86 5299849 YP_001295653.1 CDS FP0734 NC_009613.1 868607 870022 R Similar to SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase COG2265; RNA methyltransferase complement(868607..870022) Flavobacterium psychrophilum JIP02/86 5299850 YP_001295654.1 CDS FP0735 NC_009613.1 870126 870434 D Some similarities with putative transcription regulators; putative DNA binding protein 870126..870434 Flavobacterium psychrophilum JIP02/86 5299842 YP_001295655.1 CDS FP0736 NC_009613.1 870424 871719 D Similar to site-specific DNA methylase COG0270. Probable DNA (cytosine-5-)-methyltransferase; modification methyltransferase Sau3AI 870424..871719 Flavobacterium psychrophilum JIP02/86 5299843 YP_001295656.1 CDS FP0737 NC_009613.1 871709 872335 R hypothetical protein complement(871709..872335) Flavobacterium psychrophilum JIP02/86 5299844 YP_001295657.1 CDS FP0738 NC_009613.1 872427 872975 D Similar to uncharacterized protein conserved in bacteria COG3797; hypothetical protein 872427..872975 Flavobacterium psychrophilum JIP02/86 5299845 YP_001295658.1 CDS rocD NC_009613.1 873095 874339 D Controls arginine catabolism (by similarity); ornithine--oxo-acid transaminase 873095..874339 Flavobacterium psychrophilum JIP02/86 5298477 YP_001295659.1 CDS FP0740 NC_009613.1 874352 874819 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 874352..874819 Flavobacterium psychrophilum JIP02/86 5299772 YP_001295660.1 CDS FP0741 NC_009613.1 874875 875153 R Probable transmembrane protein; hypothetical protein complement(874875..875153) Flavobacterium psychrophilum JIP02/86 5298478 YP_001295661.1 CDS miaE NC_009613.1 875171 875752 R Production of the modified nucleoside 2-methylthio- cis-ribozeatin (MS[2]IO[6]A) found in some tRNAs. Catalyzes the oxygen-dependent transformation of MS[2]I[6]A into MS[2]IO[6]A (by similarity); tRNA-(MS[2]IO[6]A)-hydroxylase complement(875171..875752) Flavobacterium psychrophilum JIP02/86 5298479 YP_001295662.1 CDS FP0743 NC_009613.1 875850 877082 D Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein 875850..877082 Flavobacterium psychrophilum JIP02/86 5300109 YP_001295663.1 CDS FP0744 NC_009613.1 877333 878187 D Similar to predicted metalloprotease COG2321; metalloprotease 877333..878187 Flavobacterium psychrophilum JIP02/86 5298480 YP_001295664.1 CDS FP0745 NC_009613.1 878296 878799 R Similar to predicted membrane protein COG2323; hypothetical protein complement(878296..878799) Flavobacterium psychrophilum JIP02/86 5298481 YP_001295665.1 CDS rimK NC_009613.1 878810 880183 R Responsible for the addition of glutamate residuesto the C-terminus of ribosomal protein S6 (by similarity); ribosomal protein S6 modification protein RimK complement(878810..880183) Flavobacterium psychrophilum JIP02/86 5300169 YP_001295666.1 CDS clpA NC_009613.1 880302 882857 R Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with dnaK, dnaJ and grpE. Acts before dnaK, in the processing of protein aggregates (by similarity); ATPase with chaperone activity ATP-binding subunit complement(880302..882857) Flavobacterium psychrophilum JIP02/86 5299301 YP_001295667.1 CDS gyrA NC_009613.1 883115 885730 D DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers ofdouble-stranded DNA rings, including catenanes and knotted rings (by similarity); DNA gyrase subunit A 883115..885730 Flavobacterium psychrophilum JIP02/86 5299511 YP_001295668.1 CDS FP0749 NC_009613.1 885813 887126 D Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein 885813..887126 Flavobacterium psychrophilum JIP02/86 5298939 YP_001295669.1 CDS yjgF NC_009613.1 887229 887609 R Putative endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA. Previously thought to inhibit protein synthesis initiation. This protein may also be involved in the regulation of purine biosynthesis; hypothetical protein complement(887229..887609) Flavobacterium psychrophilum JIP02/86 5300170 YP_001295670.1 CDS FP0751 NC_009613.1 887641 890334 R Similar to protein of unknown function of the CFB phylum. Some similarities with organic solvent tolerance protein OstA COG1452. Probable transmembrane protein; hypothetical protein complement(887641..890334) Flavobacterium psychrophilum JIP02/86 5299147 YP_001295671.1 CDS FP0752 NC_009613.1 890413 891582 D Some similarities with N-acetylmuramoyl-L- alanineamidase COG0860. Hydrolyzes the link between N- acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. Probable exported protein; N-acetylmuramoyl-L-alanine amidase 890413..891582 Flavobacterium psychrophilum JIP02/86 5300171 YP_001295672.1 CDS FP0753 NC_009613.1 891623 892573 D Similar to protein of unknown function of the CFB phylum. Weakly similar to ABC-type transport system involved in resistance to organic solvents, periplasmic component COG1463. Probable exported protein; hypothetical protein 891623..892573 Flavobacterium psychrophilum JIP02/86 5300172 YP_001295673.1 CDS FP0754 NC_009613.1 892591 893916 D Similar to N-terminal region of Fe-S oxidoreductase COG0247; Fe-S oxidoreductase N-terminal region 892591..893916 Flavobacterium psychrophilum JIP02/86 5299494 YP_001295674.1 CDS FP0755 NC_009613.1 894075 894557 D hypothetical protein 894075..894557 Flavobacterium psychrophilum JIP02/86 5299495 YP_001295675.1 CDS FP0756 NC_009613.1 894599 895390 D Similar to C-terminal region of Fe-S oxidoreductase COG0247; Fe-S oxidoreductase C-terminal region 894599..895390 Flavobacterium psychrophilum JIP02/86 5299496 YP_001295676.1 CDS FP0757 NC_009613.1 895643 896125 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 895643..896125 Flavobacterium psychrophilum JIP02/86 5299497 YP_001295677.1 CDS FP0758 NC_009613.1 896277 899282 D N-terminal region similar to beta-glucosidase- related glycosidases COG1472 and C-terminal region similar to beta-lactamase class C and other penicillin binding proteins COG1680; beta-N-acetylglucosaminidase precursor 896277..899282 Flavobacterium psychrophilum JIP02/86 5299498 YP_001295678.1 CDS FP0759 NC_009613.1 899287 899985 D Similar to uncharacterized membrane protein COG1814; hypothetical protein 899287..899985 Flavobacterium psychrophilum JIP02/86 5300413 YP_001295679.1 CDS FP0760 NC_009613.1 900033 900548 D Probable exported protein. Some similarities with protein of unknown function of Trichodesmium erythraeum IMS101; hypothetical protein 900033..900548 Flavobacterium psychrophilum JIP02/86 5300414 YP_001295680.1 CDS FP0761 NC_009613.1 900562 901695 D Similar to predicted acyltransferases COG1835. Probable transmembrane protein; acyltransferase 900562..901695 Flavobacterium psychrophilum JIP02/86 5300415 YP_001295681.1 CDS FP0762 NC_009613.1 901746 902897 D Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein 901746..902897 Flavobacterium psychrophilum JIP02/86 5300416 YP_001295682.1 CDS FP0763 NC_009613.1 903002 903895 R Similar to transcriptional regulator COG0583; LysR family transcriptional regulator complement(903002..903895) Flavobacterium psychrophilum JIP02/86 5300464 YP_001295683.1 CDS FP0764 NC_009613.1 904068 904754 D Similar to putative intracellular protease/amidaseCOG0693; ThiJ/PfpI family protein 904068..904754 Flavobacterium psychrophilum JIP02/86 5300465 YP_001295684.1 CDS aroC NC_009613.1 904992 906059 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 904992..906059 Flavobacterium psychrophilum JIP02/86 5300466 YP_001295685.1 CDS gltP NC_009613.1 906208 907470 D Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family protein. TC 2.A.23.1.Z; proton glutamate symport protein GltP 906208..907470 Flavobacterium psychrophilum JIP02/86 5300716 YP_001295686.1 CDS FP0767 NC_009613.1 907507 907653 R hypothetical protein complement(907507..907653) Flavobacterium psychrophilum JIP02/86 5298790 YP_001295687.1 CDS yuxK NC_009613.1 907728 908144 R Similar to uncharacterized protein conserved in bacteria COG3011; hypothetical protein complement(907728..908144) Flavobacterium psychrophilum JIP02/86 5300467 YP_001295688.1 CDS FP0769 NC_009613.1 908158 908919 R Similar to cell wall-associated hydrolases (invasion-associated proteins) COG0791; cell wall-associated hydrolase complement(908158..908919) Flavobacterium psychrophilum JIP02/86 5299235 YP_001295689.1 CDS FP0770 NC_009613.1 909120 910295 R Similar to acetyl-CoA acetyltransferase COG0183; acetyl-CoA acetyltransferase complement(909120..910295) Flavobacterium psychrophilum JIP02/86 5300468 YP_001295690.1 CDS FP0774 NC_009613.1 912129 914018 R hypothetical protein complement(912129..914018) Flavobacterium psychrophilum JIP02/86 5299750 YP_001295691.1 CDS FP0775 NC_009613.1 914023 915723 R hypothetical protein complement(914023..915723) Flavobacterium psychrophilum JIP02/86 5299036 YP_001295692.1 CDS FP0776 NC_009613.1 915727 920100 R putative phage tail protein complement(915727..920100) Flavobacterium psychrophilum JIP02/86 5299037 YP_001295693.1 CDS FP0777 NC_009613.1 920185 920589 R hypothetical protein complement(920185..920589) Flavobacterium psychrophilum JIP02/86 5299038 YP_001295694.1 CDS FP0778 NC_009613.1 920582 920893 R hypothetical protein complement(920582..920893) Flavobacterium psychrophilum JIP02/86 5299416 YP_001295695.1 CDS FP0779 NC_009613.1 921143 921352 R hypothetical protein complement(921143..921352) Flavobacterium psychrophilum JIP02/86 5299417 YP_001295696.1 CDS FP0780 NC_009613.1 921472 922026 R hypothetical protein complement(921472..922026) Flavobacterium psychrophilum JIP02/86 5299418 YP_001295697.1 CDS FP0781 NC_009613.1 922037 922252 R hypothetical protein complement(922037..922252) Flavobacterium psychrophilum JIP02/86 5299419 YP_001295698.1 CDS FP0782 NC_009613.1 922295 922693 R hypothetical protein complement(922295..922693) Flavobacterium psychrophilum JIP02/86 5299420 YP_001295699.1 CDS FP0783 NC_009613.1 922671 922871 R hypothetical protein complement(922671..922871) Flavobacterium psychrophilum JIP02/86 5299690 YP_001295700.1 CDS FP0784 NC_009613.1 922906 923367 R hypothetical protein complement(922906..923367) Flavobacterium psychrophilum JIP02/86 5299691 YP_001295701.1 CDS FP0785 NC_009613.1 923364 924245 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(923364..924245) Flavobacterium psychrophilum JIP02/86 5299692 YP_001295702.1 CDS FP0786 NC_009613.1 924277 925239 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(924277..925239) Flavobacterium psychrophilum JIP02/86 5299693 YP_001295703.1 CDS FP0787 NC_009613.1 925239 926609 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(925239..926609) Flavobacterium psychrophilum JIP02/86 5299130 YP_001295704.1 CDS FP0788 NC_009613.1 926606 926896 R hypothetical protein complement(926606..926896) Flavobacterium psychrophilum JIP02/86 5299131 YP_001295705.1 CDS FP0789 NC_009613.1 927315 927722 D hypothetical protein 927315..927722 Flavobacterium psychrophilum JIP02/86 5299132 YP_001295706.1 CDS FP0790 NC_009613.1 927787 928017 D hypothetical protein 927787..928017 Flavobacterium psychrophilum JIP02/86 5299133 YP_001295707.1 CDS FP0791 NC_009613.1 928001 928186 D hypothetical protein 928001..928186 Flavobacterium psychrophilum JIP02/86 5299134 YP_001295708.1 CDS FP0792 NC_009613.1 928190 929047 D Some similarities with protein of unknown functionof Alcaligenes faecalis; hypothetical protein 928190..929047 Flavobacterium psychrophilum JIP02/86 5298694 YP_001295709.1 CDS FP0793 NC_009613.1 929127 930836 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(929127..930836) Flavobacterium psychrophilum JIP02/86 5298695 YP_001295710.1 CDS FP0794 NC_009613.1 930802 931440 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(930802..931440) Flavobacterium psychrophilum JIP02/86 5298696 YP_001295711.1 CDS FP0795 NC_009613.1 931430 931762 R hypothetical protein complement(931430..931762) Flavobacterium psychrophilum JIP02/86 5298697 YP_001295712.1 CDS FP0796 NC_009613.1 931926 932522 R hypothetical protein complement(931926..932522) Flavobacterium psychrophilum JIP02/86 5300677 YP_001295713.1 CDS FP0797 NC_009613.1 932509 933375 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(932509..933375) Flavobacterium psychrophilum JIP02/86 5300678 YP_001295714.1 CDS FP0798 NC_009613.1 933503 933835 R hypothetical protein complement(933503..933835) Flavobacterium psychrophilum JIP02/86 5300679 YP_001295715.1 CDS FP0799 NC_009613.1 933822 934070 R Prokaryotic DNA binding proteins belonging to the xenobiotic response element XRE family of transcriptional regulators; XRE family transcriptional regulator complement(933822..934070) Flavobacterium psychrophilum JIP02/86 5300680 YP_001295716.1 CDS ibrA NC_009613.1 934074 935213 R Similar to IbrA protein of E. coli and to predicted phosphoadenosine phosphosulfate sulfotransferase COG3969; hypothetical protein complement(934074..935213) Flavobacterium psychrophilum JIP02/86 5300681 YP_001295717.1 CDS ibrB NC_009613.1 935216 935764 R Similar to IbrB protein of E. coli. Probable DNA- binding protein; hypothetical protein complement(935216..935764) Flavobacterium psychrophilum JIP02/86 5300096 YP_001295718.1 CDS FP0802 NC_009613.1 935761 936984 R Similar to protein of unknown function of Listeriasp.; hypothetical protein complement(935761..936984) Flavobacterium psychrophilum JIP02/86 5300097 YP_001295719.1 CDS FP0803 NC_009613.1 936977 937270 R hypothetical protein complement(936977..937270) Flavobacterium psychrophilum JIP02/86 5300668 YP_001295720.1 CDS FP0804 NC_009613.1 937267 937590 R hypothetical protein complement(937267..937590) Flavobacterium psychrophilum JIP02/86 5300669 YP_001295721.1 CDS FP0805 NC_009613.1 937590 938102 R hypothetical protein complement(937590..938102) Flavobacterium psychrophilum JIP02/86 5300670 YP_001295722.1 CDS FP0806 NC_009613.1 938272 939108 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(938272..939108) Flavobacterium psychrophilum JIP02/86 5300671 YP_001295723.1 CDS FP0807 NC_009613.1 939124 941301 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(939124..941301) Flavobacterium psychrophilum JIP02/86 5300692 YP_001295724.1 CDS FP0808 NC_009613.1 941332 942216 R Similar to periplasmic serine proteases COG0616; S49 family serine protease complement(941332..942216) Flavobacterium psychrophilum JIP02/86 5300693 YP_001295725.1 CDS FP0809 NC_009613.1 942277 942831 R Probable transmembrane protein; hypothetical protein complement(942277..942831) Flavobacterium psychrophilum JIP02/86 5300694 YP_001295726.1 CDS FP0810 NC_009613.1 942833 943357 R Cell-wall hydrolase probably involved in cell- wallhydrolysis, septation or recycling (by similarity); N-acetylmuramoyl-L-alanine amidase complement(942833..943357) Flavobacterium psychrophilum JIP02/86 5300695 YP_001295727.1 CDS FP0811 NC_009613.1 943354 943572 R Probable exported protein; hypothetical protein complement(943354..943572) Flavobacterium psychrophilum JIP02/86 5300696 YP_001295728.1 CDS FP0812 NC_009613.1 943569 943886 R hypothetical protein complement(943569..943886) Flavobacterium psychrophilum JIP02/86 5299753 YP_001295729.1 CDS FP0813 NC_009613.1 943947 944483 R hypothetical protein complement(943947..944483) Flavobacterium psychrophilum JIP02/86 5299754 YP_001295730.1 CDS FP0814 NC_009613.1 944494 945045 R Probable transmembrane protein; hypothetical protein complement(944494..945045) Flavobacterium psychrophilum JIP02/86 5299755 YP_001295731.1 CDS FP0815 NC_009613.1 945047 945703 R hypothetical protein complement(945047..945703) Flavobacterium psychrophilum JIP02/86 5299756 YP_001295732.1 CDS FP0816 NC_009613.1 945706 946365 R hypothetical protein complement(945706..946365) Flavobacterium psychrophilum JIP02/86 5299615 YP_001295733.1 CDS FP0817 NC_009613.1 946367 946861 R hypothetical protein complement(946367..946861) Flavobacterium psychrophilum JIP02/86 5299616 YP_001295734.1 CDS FP0818 NC_009613.1 947174 947545 R hypothetical protein complement(947174..947545) Flavobacterium psychrophilum JIP02/86 5299617 YP_001295735.1 CDS FP0819 NC_009613.1 947547 947684 R hypothetical protein complement(947547..947684) Flavobacterium psychrophilum JIP02/86 5299618 YP_001295736.1 CDS FP0820 NC_009613.1 947805 948017 R hypothetical protein complement(947805..948017) Flavobacterium psychrophilum JIP02/86 5300221 YP_001295737.1 CDS FP0821 NC_009613.1 948183 948431 R hypothetical protein complement(948183..948431) Flavobacterium psychrophilum JIP02/86 5300222 YP_001295738.1 CDS FP0822 NC_009613.1 948614 949462 R Some weak similarities with protein of unknown function of Erwinia carotovora; hypothetical protein complement(948614..949462) Flavobacterium psychrophilum JIP02/86 5300223 YP_001295739.1 CDS FP0823 NC_009613.1 949482 949751 R hypothetical protein complement(949482..949751) Flavobacterium psychrophilum JIP02/86 5300224 YP_001295740.1 CDS FP0824 NC_009613.1 949830 950039 R hypothetical protein complement(949830..950039) Flavobacterium psychrophilum JIP02/86 5300225 YP_001295741.1 CDS FP0825 NC_009613.1 950040 950369 R hypothetical protein complement(950040..950369) Flavobacterium psychrophilum JIP02/86 5300046 YP_001295742.1 CDS FP0826 NC_009613.1 950610 950837 R hypothetical protein complement(950610..950837) Flavobacterium psychrophilum JIP02/86 5300047 YP_001295743.1 CDS FP0827 NC_009613.1 950838 951359 R hypothetical protein complement(950838..951359) Flavobacterium psychrophilum JIP02/86 5300048 YP_001295744.1 CDS FP0828 NC_009613.1 951337 951534 R hypothetical protein complement(951337..951534) Flavobacterium psychrophilum JIP02/86 5300049 YP_001295745.1 CDS FP0829 NC_009613.1 951811 955368 R Some similarities with DNA primase DnaG COG0358; hypothetical protein complement(951811..955368) Flavobacterium psychrophilum JIP02/86 5300076 YP_001295746.1 CDS FP0830 NC_009613.1 955368 955604 R hypothetical protein complement(955368..955604) Flavobacterium psychrophilum JIP02/86 5300077 YP_001295747.1 CDS FP0831 NC_009613.1 955720 956277 R LuxR family transcriptional regulator complement(955720..956277) Flavobacterium psychrophilum JIP02/86 5300078 YP_001295748.1 CDS FP0832 NC_009613.1 956288 956563 R hypothetical protein complement(956288..956563) Flavobacterium psychrophilum JIP02/86 5300079 YP_001295749.1 CDS FP0833 NC_009613.1 956685 956996 D hypothetical protein 956685..956996 Flavobacterium psychrophilum JIP02/86 5300080 YP_001295750.1 CDS FP0834 NC_009613.1 957423 959210 R ABC transporter, permease and ATP-binding protein (IM-ABC), DPL-family, MDL-subfamily, drug export, TC 3.A.1.Y.Z; mtultidrug ABC transporter permease/ATPase complement(957423..959210) Flavobacterium psychrophilum JIP02/86 5300156 YP_001295751.1 CDS FP0835 NC_009613.1 959461 960171 R Similar to uncharacterized conserved protein COG0217; hypothetical protein complement(959461..960171) Flavobacterium psychrophilum JIP02/86 5300157 YP_001295752.1 CDS gcvT NC_009613.1 960309 961391 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(960309..961391) Flavobacterium psychrophilum JIP02/86 5300158 YP_001295753.1 CDS FP0837 NC_009613.1 962577 963425 D Similar to predicted sugar kinase COG0063; hypothetical protein 962577..963425 Flavobacterium psychrophilum JIP02/86 5300559 YP_001295754.1 CDS hutH1 NC_009613.1 963523 965025 D Histidine degradation; first step; histidine ammonia-lyase 963523..965025 Flavobacterium psychrophilum JIP02/86 5300159 YP_001295755.1 CDS FP0839 NC_009613.1 965493 966161 R Similar to spermidine synthase COG0421; putative spermidine synthase complement(965493..966161) Flavobacterium psychrophilum JIP02/86 5299010 YP_001295756.1 CDS FP0840 NC_009613.1 966214 966792 D Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase COG0204; acyltransferase 966214..966792 Flavobacterium psychrophilum JIP02/86 5300849 YP_001295757.1 CDS FP0841 NC_009613.1 966868 967347 R Similar to putative transcriptional regulators of the CFB phylum; XRE family transcriptional regulator complement(966868..967347) Flavobacterium psychrophilum JIP02/86 5300850 YP_001295758.1 CDS FP0842 NC_009613.1 967651 968808 D Similar to predicted carboxypeptidase COG2866; hypothetical protein 967651..968808 Flavobacterium psychrophilum JIP02/86 5300851 YP_001295759.1 CDS FP0843 NC_009613.1 968862 969341 D Similar to transcriptional regulators COG1522; AsnC family transcriptional regulator 968862..969341 Flavobacterium psychrophilum JIP02/86 5300852 YP_001295760.1 CDS FP0844 NC_009613.1 969465 969974 D Similar to protein of unknown function of Bacillussp.; hypothetical protein 969465..969974 Flavobacterium psychrophilum JIP02/86 5300853 YP_001295761.1 CDS FP0845 NC_009613.1 970058 970786 R Similar to predicted Rossmann fold nucleotide- binding protein COG1611; hypothetical protein complement(970058..970786) Flavobacterium psychrophilum JIP02/86 5298748 YP_001295762.1 CDS FP0846 NC_009613.1 970922 971005 R Probable pseudogene, similar to C-terminal region of excinuclease ABC, A subunit UvrA; hypothetical protein complement(970922..971005) Flavobacterium psychrophilum JIP02/86 5298749 YP_001295763.1 CDS FP0847 NC_009613.1 971028 972749 R Similar to protein of unknown function of Vibrio parahaemolyticus; hypothetical protein complement(971028..972749) Flavobacterium psychrophilum JIP02/86 5298750 YP_001295764.1 CDS FP0848 NC_009613.1 972761 975232 R Similar to protein of unknown function of Vibrio parahaemolyticus; hypothetical protein complement(972761..975232) Flavobacterium psychrophilum JIP02/86 5298751 YP_001295765.1 CDS uvrA2 NC_009613.1 975381 978212 R The UvrABC repair system catalyzes the recognitionand processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate (By similarity); excinuclease ABC subunit A complement(975381..978212) Flavobacterium psychrophilum JIP02/86 5299975 YP_001295766.1 CDS FP0850 NC_009613.1 978275 979258 R AraC family transcriptional regulator complement(978275..979258) Flavobacterium psychrophilum JIP02/86 5299713 YP_001295767.1 CDS FP0851 NC_009613.1 979394 981616 D Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor 979394..981616 Flavobacterium psychrophilum JIP02/86 5299976 YP_001295768.1 CDS FP0852 NC_009613.1 981683 981853 D hypothetical protein 981683..981853 Flavobacterium psychrophilum JIP02/86 5299977 YP_001295769.1 CDS FP0853 NC_009613.1 982171 982764 R Similar to uncharacterized conserved protein COG3124; hypothetical protein complement(982171..982764) Flavobacterium psychrophilum JIP02/86 5299978 YP_001295770.1 CDS FP0854 NC_009613.1 982897 984285 D Similar to phosphomannomutase COG1109; phosphoglucomutase/phosphomannomutase family protein 982897..984285 Flavobacterium psychrophilum JIP02/86 5299979 YP_001295771.1 CDS FP0855 NC_009613.1 984391 984990 D C-terminal region similar to cheY-homologous receiver domain; putative two-component system response regulatory protein 984391..984990 Flavobacterium psychrophilum JIP02/86 5298860 YP_001295772.1 CDS FP0856 NC_009613.1 984997 986034 D Similar to signal transduction histidine kinase COG0642; putative two-component system sensor histidine kinase 984997..986034 Flavobacterium psychrophilum JIP02/86 5298861 YP_001295773.1 CDS FP0857 NC_009613.1 986264 986566 D Some similarities with putative transcription regulators; putative DNA binding protein 986264..986566 Flavobacterium psychrophilum JIP02/86 5298862 YP_001295774.1 CDS FP0858 NC_009613.1 986563 987840 D Similar to site-specific DNA methylase COG0270. Probable DNA (cytosine-5-)-methyltransferase; type II modification methyltransferase 986563..987840 Flavobacterium psychrophilum JIP02/86 5298863 YP_001295775.1 CDS FP0859 NC_009613.1 987870 988754 D hypothetical protein 987870..988754 Flavobacterium psychrophilum JIP02/86 5298646 YP_001295776.1 CDS FP0860 NC_009613.1 989068 990555 D Probable pyridoxal 5'-phosphate (PLP)-dependent enzyme, similar to selenocysteine lyase COG0520 and cysteinesulfinate desulfinase/cysteine desulfurase and related enzymes COG1104; putative aminotransferase 989068..990555 Flavobacterium psychrophilum JIP02/86 5298647 YP_001295777.1 CDS FP0861 NC_009613.1 990545 991426 R Similar to lauroyl/myristoyl acyltransferase COG1560. Probable exported protein; putative lipid A biosynthesis acyltransferase complement(990545..991426) Flavobacterium psychrophilum JIP02/86 5298648 YP_001295778.1 CDS FP0862 NC_009613.1 991597 992238 D Similar to uncharacterized membrane protein COG0705; rhomboid family protein 991597..992238 Flavobacterium psychrophilum JIP02/86 5298649 YP_001295779.1 CDS FP0863 NC_009613.1 992286 992981 D Similar to uncharacterized conserved protein COG2968; hypothetical protein 992286..992981 Flavobacterium psychrophilum JIP02/86 5298650 YP_001295780.1 CDS dnaK NC_009613.1 993589 995469 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 993589..995469 Flavobacterium psychrophilum JIP02/86 5299236 YP_001295781.1 CDS FP0865 NC_009613.1 995914 998217 R Probable pyridoxal 5'-phosphate (PLP)-dependent enzyme, N-terminal region similar to putative homoserine kinase type II (protein kinase fold) COG2334 and C- terminal region similar to 4-aminobutyrate aminotransferase and related aminotransferases COG0160; aminotransferase complement(995914..998217) Flavobacterium psychrophilum JIP02/86 5300748 YP_001295782.1 CDS FP0866 NC_009613.1 998816 999676 R Some similarities with protein of unknown functionof Nocardia farcinica; hypothetical protein complement(998816..999676) Flavobacterium psychrophilum JIP02/86 5299237 YP_001295783.1 CDS FP0867 NC_009613.1 999726 1000247 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(999726..1000247) Flavobacterium psychrophilum JIP02/86 5299238 YP_001295784.1 CDS uvrD NC_009613.1 1000410 1002743 D Has both ATPase and helicase activities. Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present. Involved in the post- incision events of nucleotide excision repair and methyl- directed mismatch repair; ATP-dependent DNA helicase UvrD 1000410..1002743 Flavobacterium psychrophilum JIP02/86 5299239 YP_001295785.1 CDS FP0869 NC_009613.1 1002795 1003415 D Similar to putative translation factor (SUA5) COG0009; putative translation factor 1002795..1003415 Flavobacterium psychrophilum JIP02/86 5299716 YP_001295786.1 CDS ptrB NC_009613.1 1003526 1005586 D Cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues (by similarity); protease II 1003526..1005586 Flavobacterium psychrophilum JIP02/86 5300571 YP_001295787.1 CDS FP0871 NC_009613.1 1005640 1006707 D Similar to cysteine synthase COG0031; cysteine synthase/cystathionine beta-synthase family protein 1005640..1006707 Flavobacterium psychrophilum JIP02/86 5298769 YP_001295788.1 CDS FP0872 NC_009613.1 1006800 1007594 R Some similarities with endonucleases; putative endonuclease complement(1006800..1007594) Flavobacterium psychrophilum JIP02/86 5300572 YP_001295789.1 CDS prfB NC_009613.1 1007634 1008515 R Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (by similarity); peptide chain release factor 2 complement(1007634..1008515) Flavobacterium psychrophilum JIP02/86 5300573 YP_001295790.1 CDS ltaE NC_009613.1 1008895 1009920 D Glycine, serine and threonine metabolism; threonine aldolase 1008895..1009920 Flavobacterium psychrophilum JIP02/86 5299103 YP_001295791.1 CDS FP0875 NC_009613.1 1010088 1010408 R Similar to uncharacterized protein conserved in bacteria COG0718; hypothetical protein complement(1010088..1010408) Flavobacterium psychrophilum JIP02/86 5299366 YP_001295792.1 CDS recJ NC_009613.1 1010740 1012428 D Single-stranded-DNA-specific exonuclease. Requiredfor many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products which are available; single-stranded-DNA-specific exonuclease RecJ 1010740..1012428 Flavobacterium psychrophilum JIP02/86 5300574 YP_001295793.1 CDS FP0877 NC_009613.1 1012592 1012765 D Probable transmembrane protein; hypothetical protein 1012592..1012765 Flavobacterium psychrophilum JIP02/86 5299383 YP_001295794.1 CDS FP0878 NC_009613.1 1012765 1013322 D Some similarities with putative DNA mismatch repair proteins; hypothetical protein 1012765..1013322 Flavobacterium psychrophilum JIP02/86 5300575 YP_001295795.1 CDS FP0879 NC_009613.1 1013365 1013757 D hypothetical protein 1013365..1013757 Flavobacterium psychrophilum JIP02/86 5299288 YP_001295796.1 CDS FP0880 NC_009613.1 1013885 1018228 D Resistance-Nodulation-Cell Division (RND) Superfamily. Probable transmembrane protein. TC 2.A.6.2.Z; multidrug resistance protein precursor AcrB/AcrD/AcrF family protein 1013885..1018228 Flavobacterium psychrophilum JIP02/86 5299289 YP_001295797.1 CDS FP0881 NC_009613.1 1018302 1019432 D Membrane Fusion Protein (MFP) Family. Probable lipoprotein. TC 8.A.1.Y.Z; membrane fusion efflux protein precursor 1018302..1019432 Flavobacterium psychrophilum JIP02/86 5299290 YP_001295798.1 CDS FP0882 NC_009613.1 1019791 1020372 R Similar to protein tyrosine/serine phosphatase COG2365; hypothetical protein complement(1019791..1020372) Flavobacterium psychrophilum JIP02/86 5299291 YP_001295799.1 CDS FP0883 NC_009613.1 1020599 1022527 R Transfers a phosphoglycerol residue from phosphatidylglycerol to the membrane-bound nascent glucan backbones(by similarity); phosphoglycerol transferase complement(1020599..1022527) Flavobacterium psychrophilum JIP02/86 5299283 YP_001295800.1 CDS sdaA NC_009613.1 1022830 1024257 D Gluconeogenesis from serine (by similarity); L-serine ammonia-lyase 1022830..1024257 Flavobacterium psychrophilum JIP02/86 5299284 YP_001295801.1 CDS panB NC_009613.1 1024559 1025377 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1024559..1025377 Flavobacterium psychrophilum JIP02/86 5299343 YP_001295802.1 CDS FP0886 NC_009613.1 1025424 1026701 D Some similarities with putative periplasmic protease COG0793; hypothetical protein 1025424..1026701 Flavobacterium psychrophilum JIP02/86 5300146 YP_001295803.1 CDS FP0887 NC_009613.1 1026735 1027430 D 23S rRNA pseudouridine synthase 1026735..1027430 Flavobacterium psychrophilum JIP02/86 5299285 YP_001295804.1 CDS aldH NC_009613.1 1027457 1028785 D Ethanol utilization; second step; aldehyde dehydrogenase 1027457..1028785 Flavobacterium psychrophilum JIP02/86 5299286 YP_001295805.1 CDS FP0889 NC_009613.1 1028803 1029531 D Probable transmembrane protein; hypothetical protein 1028803..1029531 Flavobacterium psychrophilum JIP02/86 5299223 YP_001295806.1 CDS mscS1 NC_009613.1 1029854 1031725 D Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation.; small-conductance mechanosensitive ionchannel MscS1 1029854..1031725 Flavobacterium psychrophilum JIP02/86 5299287 YP_001295807.1 CDS FP0891 NC_009613.1 1032073 1034991 R Similar to putative zinc protease of Cytophaga hutchinsonii and Bacteroides thetaiotaomicron; M16 family peptidase complement(1032073..1034991) Flavobacterium psychrophilum JIP02/86 5299861 YP_001295808.1 CDS rplT NC_009613.1 1035522 1035866 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(1035522..1035866) Flavobacterium psychrophilum JIP02/86 5300967 YP_001295809.1 CDS rpmI NC_009613.1 1036041 1036238 R 50S ribosomal protein L35 complement(1036041..1036238) Flavobacterium psychrophilum JIP02/86 5300615 YP_001295810.1 CDS infC NC_009613.1 1036340 1036753 R IF-3 binds to the 30S ribosomal subunit and shiftsthe equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesisinitiation begins. IF-3 is also a translational repressorprotein, it controls the translation of its own gene by binding to its mRNA (by similarity); translation initiation factor IF-3 complement(1036340..1036753) Flavobacterium psychrophilum JIP02/86 5299373 YP_001295811.1 CDS thrS NC_009613.1 1036912 1038858 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(1036912..1038858) Flavobacterium psychrophilum JIP02/86 5298926 YP_001295812.1 CDS FP0901 NC_009613.1 1046302 1047762 R hypothetical protein complement(1046302..1047762) Flavobacterium psychrophilum JIP02/86 5299726 YP_001295813.1 CDS FP0902 NC_009613.1 1047759 1049066 R Some similarities with putative Zn-dependent proteases COG4783, COG4784 and COG0501; M48 family peptidase complement(1047759..1049066) Flavobacterium psychrophilum JIP02/86 5299348 YP_001295814.1 CDS uvrB NC_009613.1 1050038 1052029 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1050038..1052029 Flavobacterium psychrophilum JIP02/86 5300969 YP_001295815.1 CDS FP0904 NC_009613.1 1052026 1052427 R hypothetical protein complement(1052026..1052427) Flavobacterium psychrophilum JIP02/86 5299714 YP_001295816.1 CDS FP0905 NC_009613.1 1052430 1053143 R Similar to protein of unknown function of Mycobacterium leprae; hypothetical protein complement(1052430..1053143) Flavobacterium psychrophilum JIP02/86 5300970 YP_001295817.1 CDS FP0906 NC_009613.1 1053273 1053686 D Some similarities with uncharacterized protein conserved in bacteria COG4807; hypothetical protein 1053273..1053686 Flavobacterium psychrophilum JIP02/86 5300863 YP_001295818.1 CDS FP0907 NC_009613.1 1053780 1054118 R hypothetical protein complement(1053780..1054118) Flavobacterium psychrophilum JIP02/86 5300864 YP_001295819.1 CDS sucC NC_009613.1 1054439 1055635 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1054439..1055635) Flavobacterium psychrophilum JIP02/86 5300865 YP_001295820.1 CDS FP0909 NC_009613.1 1055998 1056708 R Probable lipoprotein; hypothetical protein complement(1055998..1056708) Flavobacterium psychrophilum JIP02/86 5299184 YP_001295821.1 CDS FP0910 NC_009613.1 1056794 1058653 R Similar to predicted protease with the C-terminal PDZ COG3975; M61 family peptidase complement(1056794..1058653) Flavobacterium psychrophilum JIP02/86 5300866 YP_001295822.1 CDS FP0911 NC_009613.1 1058710 1059054 R Similar to protein of unknown function of Nocardiafarcinica and Streptomyces coelicolor; hypothetical protein complement(1058710..1059054) Flavobacterium psychrophilum JIP02/86 5300867 YP_001295823.1 CDS FP0912 NC_009613.1 1059062 1059643 R Probable transmembrane protein; hypothetical protein complement(1059062..1059643) Flavobacterium psychrophilum JIP02/86 5299896 YP_001295824.1 CDS FP0913 NC_009613.1 1059647 1059925 R Similar to uncharacterized protein conserved in bacteria COG3877; hypothetical protein complement(1059647..1059925) Flavobacterium psychrophilum JIP02/86 5299897 YP_001295825.1 CDS FP0914 NC_009613.1 1060302 1060946 D Similar to peroxiredoxin COG0450. Peroxiredoxins are a ubiquitous family of antioxidant proteins; peroxiredoxin 1060302..1060946 Flavobacterium psychrophilum JIP02/86 5299898 YP_001295826.1 CDS FP0915 NC_009613.1 1061068 1061535 R Start doubtful, the first XTG was choosen. Some similarities with protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(1061068..1061535) Flavobacterium psychrophilum JIP02/86 5299899 YP_001295827.1 CDS FP0916 NC_009613.1 1061547 1062431 R AraC family transcriptional regulator complement(1061547..1062431) Flavobacterium psychrophilum JIP02/86 5299044 YP_001295828.1 CDS FP0917 NC_009613.1 1062438 1062836 R Some similarities with cytochrome c of Thermus thermophilus. Probable transmembrane protein; cytochrome c family protein complement(1062438..1062836) Flavobacterium psychrophilum JIP02/86 5299045 YP_001295829.1 CDS FP0918 NC_009613.1 1062839 1063099 R Probable transmembrane protein; hypothetical protein complement(1062839..1063099) Flavobacterium psychrophilum JIP02/86 5299046 YP_001295830.1 CDS FP0919 NC_009613.1 1063105 1064118 R N-terminal region similar to cytochrome c oxidase,cbb3-type, subunit II, CcoO and C-terminal region similarto cytochrome c CccA. Probable transmembrane protein; cytochrome c oxidase family protein complement(1063105..1064118) Flavobacterium psychrophilum JIP02/86 5299047 YP_001295831.1 CDS FP0920 NC_009613.1 1064125 1066293 R C-terminal region similar to cytochrome c oxidase,cbb3-type, subunit I, CcoN. Probable transmembrane protein; cytochrome c oxidase family protein complement(1064125..1066293) Flavobacterium psychrophilum JIP02/86 5299048 YP_001295832.1 CDS lolD NC_009613.1 1066416 1067096 R Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, lolA.; lipoprotein releasing system ATP-binding protein LolD complement(1066416..1067096) Flavobacterium psychrophilum JIP02/86 5298712 YP_001295833.1 CDS lolC NC_009613.1 1067093 1068337 R Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, lolA; lipoprotein releasing system transmembrane protein LolC complement(1067093..1068337) Flavobacterium psychrophilum JIP02/86 5300293 YP_001295834.1 CDS FP0923 NC_009613.1 1068456 1069586 R Membrane Fusion Protein (MFP) Family. Probable lipoprotein. TC 8.A.1.Y.Z; membrane fusion efflux protein precursor complement(1068456..1069586) Flavobacterium psychrophilum JIP02/86 5299296 YP_001295835.1 CDS FP0924 NC_009613.1 1069583 1070161 R Similar to transcriptional regulator COG1309; TetR family transcriptional regulator complement(1069583..1070161) Flavobacterium psychrophilum JIP02/86 5298713 YP_001295836.1 CDS FP0925 NC_009613.1 1070325 1070951 R Similar to cAMP-binding proteins - catabolite geneactivator and regulatory subunit of cAMP-dependent protein kinases COG0664; Crp/Fnr family transcriptional regulator complement(1070325..1070951) Flavobacterium psychrophilum JIP02/86 5298714 YP_001295837.1 CDS FP0929 NC_009613.1 1072915 1073289 D Similar to uncharacterized conserved protein COG3012; hypothetical protein 1072915..1073289 Flavobacterium psychrophilum JIP02/86 5300596 YP_001295838.1 CDS FP0930 NC_009613.1 1073399 1073779 D Start doubtful; hypothetical protein 1073399..1073779 Flavobacterium psychrophilum JIP02/86 5300597 YP_001295839.1 CDS FP0931 NC_009613.1 1073951 1075033 D Membrane Fusion Protein (MFP) Family. Probable lipoprotein. TC 8.A.1.Y.Z; membrane fusion efflux protein precursor 1073951..1075033 Flavobacterium psychrophilum JIP02/86 5300598 YP_001295840.1 CDS FP0932 NC_009613.1 1075058 1078225 D Resistance-Nodulation-Cell Division (RND) Superfamily. Probable transmembrane protein. TC 2.A.6.2.Z; multidrug resistance protein precursor AcrB/AcrD/AcrF family protein 1075058..1078225 Flavobacterium psychrophilum JIP02/86 5300599 YP_001295841.1 CDS FP0933 NC_009613.1 1078218 1079654 D Outer Membrane Factor (OMF) Family protein. TC 1.B.17.Y.Z; outer membrane efflux protein precursor 1078218..1079654 Flavobacterium psychrophilum JIP02/86 5300697 YP_001295842.1 CDS FP0934 NC_009613.1 1079848 1080327 R Similar to universal stress protein UspA and related nucleotide-binding proteins COG0589; universal stress protein complement(1079848..1080327) Flavobacterium psychrophilum JIP02/86 5300698 YP_001295843.1 CDS FP0935 NC_009613.1 1080578 1081741 R N-terminal region similar to CheY-like receiver domain and C-terminal region similar to putative dolichyl- phosphate beta-glucosyltransferase; two-component system response regulatory protein-glycosyl transferase, group 2 family protein complement(1080578..1081741) Flavobacterium psychrophilum JIP02/86 5300699 YP_001295844.1 CDS FP0936 NC_009613.1 1081849 1084938 D Some weak similarities with predicted integral membrane protein COG5617; transmembrane protein precursor 1081849..1084938 Flavobacterium psychrophilum JIP02/86 5300700 YP_001295845.1 CDS FP0937 NC_009613.1 1084938 1086176 D Probable exported protein; hypothetical protein 1084938..1086176 Flavobacterium psychrophilum JIP02/86 5300844 YP_001295846.1 CDS FP0938 NC_009613.1 1086160 1087716 D Some similarities with to endo-beta-mannanase COG3934. Putative lipoprotein; glycosyl hydrolase 1086160..1087716 Flavobacterium psychrophilum JIP02/86 5300845 YP_001295847.1 CDS FP0939 NC_009613.1 1087713 1088879 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(1087713..1088879) Flavobacterium psychrophilum JIP02/86 5300846 YP_001295848.1 CDS FP0940 NC_009613.1 1088904 1090163 R Probable transmembrane protein; putative capsular polysaccharide biosynthesis protein complement(1088904..1090163) Flavobacterium psychrophilum JIP02/86 5300847 YP_001295849.1 CDS FP0941 NC_009613.1 1090380 1090502 R hypothetical protein complement(1090380..1090502) Flavobacterium psychrophilum JIP02/86 5300848 YP_001295850.1 CDS acsA NC_009613.1 1091635 1093542 D Enables the cell to use acetate during aerobic growth; acetate--CoA ligase 1091635..1093542 Flavobacterium psychrophilum JIP02/86 5300882 YP_001295851.1 CDS FP0943 NC_009613.1 1093680 1094246 R Similar to DNA polymerase III, epsilon subunit andrelated 3'-5' exonucleases COG0847; exonuclease complement(1093680..1094246) Flavobacterium psychrophilum JIP02/86 5298735 YP_001295852.1 CDS FP0944 NC_009613.1 1094248 1096158 R Predicted signal-transduction protein containing cAMP-binding and CBS domains COG2905; hypothetical protein complement(1094248..1096158) Flavobacterium psychrophilum JIP02/86 5300883 YP_001295853.1 CDS FP0945 NC_009613.1 1096295 1097629 R Similar to superfamily II DNA and RNA helicases COG0513; DEAD-box ATP dependent DNA helicase complement(1096295..1097629) Flavobacterium psychrophilum JIP02/86 5300884 YP_001295854.1 CDS FP0946 NC_009613.1 1097719 1099263 R Similar to DNA or RNA helicases of superfamily II COG1061; putative DNA or RNA helicase complement(1097719..1099263) Flavobacterium psychrophilum JIP02/86 5300885 YP_001295855.1 CDS FP0947 NC_009613.1 1099337 1099852 R hypothetical protein complement(1099337..1099852) Flavobacterium psychrophilum JIP02/86 5299743 YP_001295856.1 CDS ydzA NC_009613.1 1099957 1100235 D Similar to YdzA protein of Bacilus subtilis; hypothetical protein 1099957..1100235 Flavobacterium psychrophilum JIP02/86 5299744 YP_001295857.1 CDS mscS2 NC_009613.1 1100228 1101490 D Similar to small-conductance mechanosensitive (MS)channel COG0668. MS channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation.; small-conductance mechanosensitive ionchannel MscS2 1100228..1101490 Flavobacterium psychrophilum JIP02/86 5300613 YP_001295858.1 CDS FP0950 NC_009613.1 1101634 1102020 R Similar to acyl-CoA hydrolase COG1607; Acyl-CoA hydrolase family protein complement(1101634..1102020) Flavobacterium psychrophilum JIP02/86 5299862 YP_001295859.1 CDS FP0951 NC_009613.1 1102017 1102433 R Similar to ADP-ribose pyrophosphatase COG1051; MutT/nudix family protein complement(1102017..1102433) Flavobacterium psychrophilum JIP02/86 5299745 YP_001295860.1 CDS FP0952 NC_009613.1 1102523 1102915 D hypothetical protein 1102523..1102915 Flavobacterium psychrophilum JIP02/86 5299746 YP_001295861.1 CDS hisIE NC_009613.1 1102927 1103526 R histidine biosynthesis bifunctional protein HisIE; catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein complement(1102927..1103526) Flavobacterium psychrophilum JIP02/86 5299747 YP_001295862.1 CDS hisF NC_009613.1 1103529 1104284 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1103529..1104284) Flavobacterium psychrophilum JIP02/86 5298959 YP_001295863.1 CDS hisA NC_009613.1 1104288 1105013 R Amino-acid biosynthesis; L-histidine biosynthesis;L- histidine from PRPP: step 4; 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide isomerase complement(1104288..1105013) Flavobacterium psychrophilum JIP02/86 5298956 YP_001295864.1 CDS hisH NC_009613.1 1105182 1105763 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1105182..1105763) Flavobacterium psychrophilum JIP02/86 5299621 YP_001295865.1 CDS hisB NC_009613.1 1105852 1106988 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(1105852..1106988) Flavobacterium psychrophilum JIP02/86 5298958 YP_001295866.1 CDS hisC NC_009613.1 1106988 1108028 R Amino-acid biosynthesis; L-histidine biosynthesis;L- histidine from PRPP: step 7; histidinol-phosphate transaminase complement(1106988..1108028) Flavobacterium psychrophilum JIP02/86 5299622 YP_001295867.1 CDS hisD NC_009613.1 1108021 1109310 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1108021..1109310) Flavobacterium psychrophilum JIP02/86 5299623 YP_001295868.1 CDS hisG NC_009613.1 1109322 1110179 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1109322..1110179) Flavobacterium psychrophilum JIP02/86 5298955 YP_001295869.1 CDS FP0961 NC_009613.1 1110471 1110914 R Probable transmembrane protein; hypothetical protein complement(1110471..1110914) Flavobacterium psychrophilum JIP02/86 5298957 YP_001295870.1 CDS FP0962 NC_009613.1 1111008 1113101 D Transfers a phosphoglycerol residue from phosphatidylglycerol to the membrane-bound nascent glucan backbones(by similarity); phosphoglycerol transferase 1111008..1113101 Flavobacterium psychrophilum JIP02/86 5300064 YP_001295871.1 CDS FP0963 NC_009613.1 1113184 1115211 R Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein complement(1113184..1115211) Flavobacterium psychrophilum JIP02/86 5300065 YP_001295872.1 CDS FP0964 NC_009613.1 1115493 1116239 R Fatty acid biosynthesis pathway; first reduction step (by similarity); 3-oxoacyl-[acyl-carrier-protein] reductase complement(1115493..1116239) Flavobacterium psychrophilum JIP02/86 5300066 YP_001295873.1 CDS FP0965 NC_009613.1 1116741 1117826 D DNA polymerase III is a complex, multichain enzymeresponsible for most of the replicative synthesis in bacteria (by similarity); DNA polymerase III subunit 1116741..1117826 Flavobacterium psychrophilum JIP02/86 5300067 YP_001295874.1 CDS FP0966 NC_009613.1 1117970 1118506 D hypothetical protein 1117970..1118506 Flavobacterium psychrophilum JIP02/86 5299278 YP_001295875.1 CDS FP0967 NC_009613.1 1118519 1118731 R hypothetical protein complement(1118519..1118731) Flavobacterium psychrophilum JIP02/86 5299279 YP_001295876.1 CDS ppx NC_009613.1 1118718 1119608 R Degradation of inorganic polyphosphates. Orthophosphate is released progressively from the ends of polyphosphate (by similarity); exopolyphosphatase complement(1118718..1119608) Flavobacterium psychrophilum JIP02/86 5299280 YP_001295877.1 CDS ppk NC_009613.1 1119669 1121774 R Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) (by similarity); polyphosphate kinase complement(1119669..1121774) Flavobacterium psychrophilum JIP02/86 5299100 YP_001295878.1 CDS FP0971 NC_009613.1 1122889 1123059 R hypothetical protein complement(1122889..1123059) Flavobacterium psychrophilum JIP02/86 5299281 YP_001295879.1 CDS sucD NC_009613.1 1123736 1124608 R Tricarboxylic acid cycle, Tetramer of two alpha and two beta subunits (by similarity); succinyl-CoA synthetase, alpha subunit complement(1123736..1124608) Flavobacterium psychrophilum JIP02/86 5299282 YP_001295880.1 CDS FP0973 NC_009613.1 1124692 1125054 R hypothetical protein complement(1124692..1125054) Flavobacterium psychrophilum JIP02/86 5299185 YP_001295881.1 CDS FP0974 NC_009613.1 1125057 1125986 R Similar to UDP-3-O-(R-3-hydroxymyristoyl)- glucosamine N-acyltransferase LpxD; UDP-N-acetylglucosamine acyltransferase complement(1125057..1125986) Flavobacterium psychrophilum JIP02/86 5300359 YP_001295882.1 CDS efp NC_009613.1 1125993 1126556 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(1125993..1126556) Flavobacterium psychrophilum JIP02/86 5300360 YP_001295883.1 CDS lpxA NC_009613.1 1126624 1127406 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(1126624..1127406) Flavobacterium psychrophilum JIP02/86 5300872 YP_001295884.1 CDS lpxC/fabZ NC_009613.1 1127461 1128849 R catalyzes the zinc dependent deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis and catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP in fatty acid biosynthesis; bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase complement(1127461..1128849) Flavobacterium psychrophilum JIP02/86 5300325 YP_001295885.1 CDS lpxD NC_009613.1 1128852 1129871 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1128852..1129871) Flavobacterium psychrophilum JIP02/86 5300327 YP_001295886.1 CDS FP0979 NC_009613.1 1129994 1131229 R Similar to HD superfamily phosphohydrolases COG1078; phosphohydrolase complement(1129994..1131229) Flavobacterium psychrophilum JIP02/86 5300328 YP_001295887.1 CDS FP0980 NC_009613.1 1131368 1132078 D Some weak similarities with voltage-gated potassium channel of eukaryotes. Probable transmembrane protein; hypothetical protein 1131368..1132078 Flavobacterium psychrophilum JIP02/86 5300361 YP_001295888.1 CDS kdsB NC_009613.1 1132081 1132806 R Lipopolysaccharide biosynthesis; KDO biosynthesis;fourth step (by similarity); 3-deoxy-manno-octulosonate cytidylyltransferase complement(1132081..1132806) Flavobacterium psychrophilum JIP02/86 5300362 YP_001295889.1 CDS FP0982 NC_009613.1 1133012 1134436 R Some similarities with ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member COG0507; ATP-dependent exodeoxyribonuclease complement(1133012..1134436) Flavobacterium psychrophilum JIP02/86 5300842 YP_001295890.1 CDS FP0983 NC_009613.1 1134776 1137199 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(1134776..1137199) Flavobacterium psychrophilum JIP02/86 5300497 YP_001295891.1 CDS FP0984 NC_009613.1 1137290 1138324 R Probable transmembrane protein containing an helix- turn-helix, AraC type motif in C-terminal; AraC family transcriptional regulator complement(1137290..1138324) Flavobacterium psychrophilum JIP02/86 5300498 YP_001295892.1 CDS FP0985 NC_009613.1 1138649 1139473 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1138649..1139473 Flavobacterium psychrophilum JIP02/86 5300499 YP_001295893.1 CDS FP0986 NC_009613.1 1139464 1140072 D Similar to N6-adenine-specific methylase COG0742; modification methyltransferase 1139464..1140072 Flavobacterium psychrophilum JIP02/86 5300500 YP_001295894.1 CDS FP0987 NC_009613.1 1140083 1141081 D hypothetical protein 1140083..1141081 Flavobacterium psychrophilum JIP02/86 5300501 YP_001295895.1 CDS FP0988 NC_009613.1 1141351 1143447 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(1141351..1143447) Flavobacterium psychrophilum JIP02/86 5300502 YP_001295896.1 CDS FP0989 NC_009613.1 1143513 1144490 R hypothetical protein complement(1143513..1144490) Flavobacterium psychrophilum JIP02/86 5300503 YP_001295897.1 CDS FP0990 NC_009613.1 1144607 1145965 D Probable transmembrane protein containing an histidine kinase domain in C-terminal; two-component system sensor histidine kinase 1144607..1145965 Flavobacterium psychrophilum JIP02/86 5300504 YP_001295898.1 CDS FP0991 NC_009613.1 1146004 1146564 R hypothetical protein complement(1146004..1146564) Flavobacterium psychrophilum JIP02/86 5300505 YP_001295899.1 CDS FP0992 NC_009613.1 1146774 1147352 R Similar to transcriptional regulator COG1309; TetR family transcriptional regulator complement(1146774..1147352) Flavobacterium psychrophilum JIP02/86 5300513 YP_001295900.1 CDS FP0993 NC_009613.1 1147354 1147743 R Similar to predicted membrane protein of Cytophagahutchinsonii; hypothetical protein complement(1147354..1147743) Flavobacterium psychrophilum JIP02/86 5300514 YP_001295901.1 CDS FP0994 NC_009613.1 1147926 1148792 D AraC family transcriptional regulator 1147926..1148792 Flavobacterium psychrophilum JIP02/86 5300515 YP_001295902.1 CDS FP0997 NC_009613.1 1151199 1152095 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 1151199..1152095 Flavobacterium psychrophilum JIP02/86 5299059 YP_001295903.1 CDS FP0998 NC_009613.1 1152135 1153721 D in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 1152135..1153721 Flavobacterium psychrophilum JIP02/86 5299060 YP_001295904.1 CDS FP0999 NC_009613.1 1153740 1154267 D hypothetical protein 1153740..1154267 Flavobacterium psychrophilum JIP02/86 5299061 YP_001295905.1 CDS FP1000 NC_009613.1 1154369 1155811 R Inorganic Phosphate Transporter (PiT) Family. TC 2.A.20.Y.Z; phosphate transporter complement(1154369..1155811) Flavobacterium psychrophilum JIP02/86 5299062 YP_001295906.1 CDS FP1001 NC_009613.1 1155836 1156489 R Similar to phosphate transport regulator (distant homolog of PhoU) COG1392; hypothetical protein complement(1155836..1156489) Flavobacterium psychrophilum JIP02/86 5298869 YP_001295907.1 CDS FP1002 NC_009613.1 1156660 1158288 D Similar to acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) COG4799; carboxyltransferase 1156660..1158288 Flavobacterium psychrophilum JIP02/86 5298870 YP_001295908.1 CDS FP1003 NC_009613.1 1158333 1159910 D Similar to protein of unknown function of Cytophaga hutchinsonii. Some similarities with periplasmic protease COG0793; hypothetical protein 1158333..1159910 Flavobacterium psychrophilum JIP02/86 5298871 YP_001295909.1 CDS FP1004 NC_009613.1 1159917 1161548 D Some similarities with aminopeptidase N COG0308; metalloprotease 1159917..1161548 Flavobacterium psychrophilum JIP02/86 5298872 YP_001295910.1 CDS FP1005 NC_009613.1 1161627 1162469 D C-terminal region similar to AraC-type DNA- bindingdomain-containing proteins COG2207; AraC family transcriptional regulator 1161627..1162469 Flavobacterium psychrophilum JIP02/86 5298873 YP_001295911.1 CDS ybcL NC_009613.1 1162555 1163094 D Similar to protein of unknown function YbcL of E. coli. Periplasmic protein; phospholipid-binding protein precursorybcl 1162555..1163094 Flavobacterium psychrophilum JIP02/86 5300165 YP_001295912.1 CDS FP1007 NC_009613.1 1163104 1163340 D Similar to protein of unknown function of Nostoc punctiforme and Gloeobacter violaceus; hypothetical protein 1163104..1163340 Flavobacterium psychrophilum JIP02/86 5300610 YP_001295913.1 CDS FP1008 NC_009613.1 1163504 1165570 R Some similarities with aminopeptidase N COG0308; M1 family metalloprotease complement(1163504..1165570) Flavobacterium psychrophilum JIP02/86 5300166 YP_001295914.1 CDS FP1009 NC_009613.1 1165645 1166379 D Similar to predicted ATPases of PP-loop superfamily COG2102; hypothetical protein 1165645..1166379 Flavobacterium psychrophilum JIP02/86 5300167 YP_001295915.1 CDS recG NC_009613.1 1166460 1168565 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1166460..1168565 Flavobacterium psychrophilum JIP02/86 5300168 YP_001295916.1 CDS FP1011 NC_009613.1 1168624 1169469 R Similar to protein of unknown function of Cytophaga hutchinsonii. Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(1168624..1169469) Flavobacterium psychrophilum JIP02/86 5299382 YP_001295917.1 CDS FP1012 NC_009613.1 1169608 1170078 D Similar to uncharacterized conserved protein COG4276; hypothetical protein 1169608..1170078 Flavobacterium psychrophilum JIP02/86 5299110 YP_001295918.1 CDS FP1013 NC_009613.1 1170081 1170779 D Similar to short-chain dehydrogenases; short-chain type dehydrogenase 1170081..1170779 Flavobacterium psychrophilum JIP02/86 5299111 YP_001295919.1 CDS phrB1 NC_009613.1 1170942 1172228 D This enzyme catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand, upon exposure to ultraviolet radiation; deoxyribodipyrimidine photolyase PhrB1 1170942..1172228 Flavobacterium psychrophilum JIP02/86 5299112 YP_001295920.1 CDS FP1015 NC_009613.1 1172443 1172856 D two-component system response regulatory protein 1172443..1172856 Flavobacterium psychrophilum JIP02/86 5299544 YP_001295921.1 CDS FP1016 NC_009613.1 1172864 1173406 D Similar to protein of unknown function of Anabaenasp. and Nostoc sp and similar to N-terminal region of eukaryotic soluble guanylyl cyclase beta 1 subunit; hypothetical protein 1172864..1173406 Flavobacterium psychrophilum JIP02/86 5299113 YP_001295922.1 CDS FP1017 NC_009613.1 1173408 1176020 D two-component system sensor histidine kinase 1173408..1176020 Flavobacterium psychrophilum JIP02/86 5299114 YP_001295923.1 CDS FP1018 NC_009613.1 1176023 1177159 D Similar to uncharacterized conserved protein COG3287; hypothetical protein 1176023..1177159 Flavobacterium psychrophilum JIP02/86 5299245 YP_001295924.1 CDS FP1019 NC_009613.1 1177159 1178184 D two-component system sensor histidine kinase 1177159..1178184 Flavobacterium psychrophilum JIP02/86 5299246 YP_001295925.1 CDS FP1020 NC_009613.1 1178184 1178501 D Histidine-phosphotransfer intermediate; two-component system histidine-containing phosphotransfer protein (HPt) 1178184..1178501 Flavobacterium psychrophilum JIP02/86 5299247 YP_001295926.1 CDS FP1021 NC_009613.1 1178514 1179239 D Similar to response regulator of the LytR/AlgR family COG3279; two-component system response regulatory protein 1178514..1179239 Flavobacterium psychrophilum JIP02/86 5299248 YP_001295927.1 CDS FP1022 NC_009613.1 1179280 1181337 R Some similarities to protein of unknown function. Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(1179280..1181337) Flavobacterium psychrophilum JIP02/86 5300816 YP_001295928.1 CDS FP1023 NC_009613.1 1181653 1183851 R Some similarities with cell surface proteins of Methanosarcina sp.; cell surface protein complement(1181653..1183851) Flavobacterium psychrophilum JIP02/86 5300817 YP_001295929.1 CDS FP1024 NC_009613.1 1183877 1185310 R Some similarities with metalloproteases. Probable exported protein; M43 cytophagalysin family metalloprotease precursor complement(1183877..1185310) Flavobacterium psychrophilum JIP02/86 5300818 YP_001295930.1 CDS FP1025 NC_009613.1 1186198 1187778 D Similar to glutamate synthase domain 2 COG0069; putative ferredoxin-dependent glutamate synthase 1186198..1187778 Flavobacterium psychrophilum JIP02/86 5300819 YP_001295931.1 CDS FP1026 NC_009613.1 1187930 1188838 D Similar to 2-keto-4-pentenoate hydratase/2-oxohepta- 3-ene-1,7-dioic acid hydratase (catechol pathway) COG0179; fumarylacetoacetate hydrolase family protein 1187930..1188838 Flavobacterium psychrophilum JIP02/86 5300820 YP_001295932.1 CDS ydcP NC_009613.1 1188993 1190885 D Similar to putative protease YdcP precursor of Escherichia coli; putative protease YdcP precursor 1188993..1190885 Flavobacterium psychrophilum JIP02/86 5300335 YP_001295933.1 CDS bfmBA NC_009613.1 1190965 1192941 R E1 component of branched-chain alpha-keto acid dehydrogenase complex. The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched- chain alpha-ketoacid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) complement(1190965..1192941) Flavobacterium psychrophilum JIP02/86 5300612 YP_001295934.1 CDS FP1029 NC_009613.1 1193215 1194165 D Similar to isopenicillin N synthase and related dioxygenases COG3491; oxidoreductase 1193215..1194165 Flavobacterium psychrophilum JIP02/86 5300230 YP_001295935.1 CDS FP1030 NC_009613.1 1194356 1194754 D Similar to protein of unknown function; hypothetical protein 1194356..1194754 Flavobacterium psychrophilum JIP02/86 5300336 YP_001295936.1 CDS FP1031 NC_009613.1 1194800 1195129 D Similar to protein YciH of Escherichia coli; translation initiation factor SUI1 family protein 1194800..1195129 Flavobacterium psychrophilum JIP02/86 5300337 YP_001295937.1 CDS udp NC_009613.1 1195418 1196284 D Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis; uridine phosphorylase 1195418..1196284 Flavobacterium psychrophilum JIP02/86 5300338 YP_001295938.1 CDS FP1033 NC_009613.1 1196364 1196897 D Acetylation of N-terminal amino-acid of ribosomal protein; ribosomal-protein-amino-adic N-acetyltransferase 1196364..1196897 Flavobacterium psychrophilum JIP02/86 5299788 YP_001295939.1 CDS FP1034 NC_009613.1 1196903 1197397 D hypothetical protein 1196903..1197397 Flavobacterium psychrophilum JIP02/86 5300735 YP_001295940.1 CDS FP1035 NC_009613.1 1197429 1198553 D Similar to putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes COG3320; hypothetical protein 1197429..1198553 Flavobacterium psychrophilum JIP02/86 5300736 YP_001295941.1 CDS FP1036 NC_009613.1 1198569 1199414 D Similar to ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components COG0715; hypothetical protein 1198569..1199414 Flavobacterium psychrophilum JIP02/86 5300737 YP_001295942.1 CDS FP1037 NC_009613.1 1199446 1200390 D Similar to protein of unknown function of Methanosarcina sp. Probable transmembrane protein; hypothetical protein 1199446..1200390 Flavobacterium psychrophilum JIP02/86 5300738 YP_001295943.1 CDS ung NC_009613.1 1200521 1201183 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNApolymerase or due to deamination of cytosine (By similarity); Uracil-DNA glycosylase complement(1200521..1201183) Flavobacterium psychrophilum JIP02/86 5300739 YP_001295944.1 CDS FP1039 NC_009613.1 1201292 1203457 D This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatchrecognition step (by similarity); MutS family protein 1201292..1203457 Flavobacterium psychrophilum JIP02/86 5299792 YP_001295945.1 CDS FP1040 NC_009613.1 1203528 1203956 R hypothetical protein complement(1203528..1203956) Flavobacterium psychrophilum JIP02/86 5300868 YP_001295946.1 CDS pheT NC_009613.1 1204256 1206676 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1204256..1206676 Flavobacterium psychrophilum JIP02/86 5300869 YP_001295947.1 CDS FP1042 NC_009613.1 1206903 1208519 R ABC2 type, ART family, REG subfamily protein, probably involved in regulation of translation initiation. Similar to Uup protein COG0488; translation intitiation regulation protein complement(1206903..1208519) Flavobacterium psychrophilum JIP02/86 5299002 YP_001295948.1 CDS FP1043 NC_009613.1 1208616 1209356 D Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein 1208616..1209356 Flavobacterium psychrophilum JIP02/86 5300870 YP_001295949.1 CDS FP1044 NC_009613.1 1209356 1210747 D Similar to predicted Fe-S oxidoreductases COG1964; hypothetical protein 1209356..1210747 Flavobacterium psychrophilum JIP02/86 5300871 YP_001295950.1 CDS FP1045 NC_009613.1 1210752 1210940 D hypothetical protein 1210752..1210940 Flavobacterium psychrophilum JIP02/86 5298565 YP_001295951.1 CDS FP1046 NC_009613.1 1210947 1211141 D hypothetical protein 1210947..1211141 Flavobacterium psychrophilum JIP02/86 5298566 YP_001295952.1 CDS FP1047 NC_009613.1 1211344 1212735 D Some similarities with protein of unknown functionof Flavobacterium psychrophilum; hypothetical protein 1211344..1212735 Flavobacterium psychrophilum JIP02/86 5298567 YP_001295953.1 CDS tal NC_009613.1 1212849 1213505 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(1212849..1213505) Flavobacterium psychrophilum JIP02/86 5298568 YP_001295954.1 CDS FP1049 NC_009613.1 1213755 1214558 R Similar to short-chain dehydrogenases; short-chain type dehydrogenase complement(1213755..1214558) Flavobacterium psychrophilum JIP02/86 5299868 YP_001295955.1 CDS FP1050 NC_009613.1 1214582 1214740 R Some similarities with chloromuconate cycloisomerase YkfB1 of Rhodopirellula baltica; hypothetical protein complement(1214582..1214740) Flavobacterium psychrophilum JIP02/86 5298569 YP_001295956.1 CDS FP1051 NC_009613.1 1214979 1216031 D C-terminal region similar to glutamine cyclotransferase COG3823; putative glutamine cyclotransferase 1214979..1216031 Flavobacterium psychrophilum JIP02/86 5298580 YP_001295957.1 CDS FP1052 NC_009613.1 1216605 1216787 R Probable transmembrane protein; hypothetical protein complement(1216605..1216787) Flavobacterium psychrophilum JIP02/86 5298581 YP_001295958.1 CDS holA NC_009613.1 1216850 1217854 R Similar to HolA DNA polymerase III, delta subunit COG1466; DNA polymerase III, delta subunit complement(1216850..1217854) Flavobacterium psychrophilum JIP02/86 5298582 YP_001295959.1 CDS FP1054 NC_009613.1 1217941 1218387 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1217941..1218387 Flavobacterium psychrophilum JIP02/86 5298878 YP_001295960.1 CDS FP1055 NC_009613.1 1218395 1219396 D Similar to predicted glycosyltransferases COG1216; glycosyl transferase, group 2 family protein 1218395..1219396 Flavobacterium psychrophilum JIP02/86 5298583 YP_001295961.1 CDS FP1056 NC_009613.1 1219438 1219677 D hypothetical protein 1219438..1219677 Flavobacterium psychrophilum JIP02/86 5299953 YP_001295962.1 CDS FP1057 NC_009613.1 1219735 1219875 R hypothetical protein complement(1219735..1219875) Flavobacterium psychrophilum JIP02/86 5299954 YP_001295963.1 CDS FP1058 NC_009613.1 1219868 1220419 R hypothetical protein complement(1219868..1220419) Flavobacterium psychrophilum JIP02/86 5299955 YP_001295964.1 CDS adeC NC_009613.1 1220608 1222230 D adenine deaminase 1220608..1222230 Flavobacterium psychrophilum JIP02/86 5299956 YP_001295965.1 CDS FP1060 NC_009613.1 1222317 1222664 R Similar to type III effector HopPmaJ of the plant pathogen Pseudomonas syringae; hypothetical protein complement(1222317..1222664) Flavobacterium psychrophilum JIP02/86 5298736 YP_001295966.1 CDS FP1061 NC_009613.1 1222668 1223381 R Similar to predicted methyltransferase COG0313; methyltransferase complement(1222668..1223381) Flavobacterium psychrophilum JIP02/86 5299957 YP_001295967.1 CDS FP1062 NC_009613.1 1223382 1224209 R hypothetical protein complement(1223382..1224209) Flavobacterium psychrophilum JIP02/86 5298799 YP_001295968.1 CDS tdk NC_009613.1 1224386 1224994 D catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 1224386..1224994 Flavobacterium psychrophilum JIP02/86 5298800 YP_001295969.1 CDS mur/alr NC_009613.1 1225004 1227457 D Involved in cell wall formation (peptidoglycan biosynthesis); putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase 1225004..1227457 Flavobacterium psychrophilum JIP02/86 5299695 YP_001295970.1 CDS mscL NC_009613.1 1227544 1227960 D Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation.; large-conductance mechanosensitive channel 1227544..1227960 Flavobacterium psychrophilum JIP02/86 5299887 YP_001295971.1 CDS FP1066 NC_009613.1 1228107 1229660 D Similar to response regulator of Cytophaga hutchinsonii and Porphyromonas gingivalis; two-component system response regulatory protein 1228107..1229660 Flavobacterium psychrophilum JIP02/86 5299860 YP_001295972.1 CDS FP1067 NC_009613.1 1229752 1230159 D Similar to predicted ATPase or kinase COG0802; hypothetical protein 1229752..1230159 Flavobacterium psychrophilum JIP02/86 5298801 YP_001295973.1 CDS ald NC_009613.1 1230203 1231396 D May play a role in cell wall synthesis as L-alanine is an important constituent of the peptidoglycan layer; alanine dehydrogenase 1230203..1231396 Flavobacterium psychrophilum JIP02/86 5298802 YP_001295974.1 CDS FP1069 NC_009613.1 1231449 1231823 D Putative lipoprotein; hypothetical protein 1231449..1231823 Flavobacterium psychrophilum JIP02/86 5299222 YP_001295975.1 CDS FP1071 NC_009613.1 1233788 1234165 D Similar to proteins of unknown function of Flavobacterium psychrophilum; hypothetical protein 1233788..1234165 Flavobacterium psychrophilum JIP02/86 5299912 YP_001295976.1 CDS FP1077 NC_009613.1 1244489 1245166 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1244489..1245166) Flavobacterium psychrophilum JIP02/86 5299269 YP_001295977.1 CDS FP1078 NC_009613.1 1245250 1246338 D Similar to cellulase M and related proteins COG1363; M42 family peptidase 1245250..1246338 Flavobacterium psychrophilum JIP02/86 5300954 YP_001295978.1 CDS purC NC_009613.1 1246535 1247485 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1246535..1247485) Flavobacterium psychrophilum JIP02/86 5299271 YP_001295979.1 CDS FP1080 NC_009613.1 1247694 1248509 R Similar to short-chain dehydrogenases; short-chain type dehydrogenase complement(1247694..1248509) Flavobacterium psychrophilum JIP02/86 5298680 YP_001295980.1 CDS phoH NC_009613.1 1248817 1249767 R PhoH is a cytoplasmic protein and predicted ATPasethat is induced by phosphate starvation (by similarity); phosphate starvation-inducible protein PhoH complement(1248817..1249767) Flavobacterium psychrophilum JIP02/86 5299272 YP_001295981.1 CDS FP1082 NC_009613.1 1249864 1250694 D Similar to uncharacterized conserved protein COG1912 and to Fjo14 protein of Flavobacterium johnsoniae; hypothetical protein 1249864..1250694 Flavobacterium psychrophilum JIP02/86 5300305 YP_001295982.1 CDS FP1083 NC_009613.1 1250745 1250945 D hypothetical protein 1250745..1250945 Flavobacterium psychrophilum JIP02/86 5299321 YP_001295983.1 CDS FP1084 NC_009613.1 1251069 1252076 D Similar to protein of unknown function of Streptomyces avermitilis and Kineococcus radiotolerans; hypothetical protein 1251069..1252076 Flavobacterium psychrophilum JIP02/86 5299322 YP_001295984.1 CDS FP1085 NC_009613.1 1252083 1253006 D Some similarities with predicted sugar kinase COG0061; hypothetical protein 1252083..1253006 Flavobacterium psychrophilum JIP02/86 5299323 YP_001295985.1 CDS FP1086 NC_009613.1 1253304 1253489 D hypothetical protein 1253304..1253489 Flavobacterium psychrophilum JIP02/86 5299324 YP_001295986.1 CDS FP1087 NC_009613.1 1253471 1253767 D Similar to uncharacterized conserved protein COG1359 and uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides COG2329; hypothetical protein 1253471..1253767 Flavobacterium psychrophilum JIP02/86 5300543 YP_001295987.1 CDS FP1088 NC_009613.1 1253812 1254483 D Similar to probable methyltransferase of Bacillus sp.; methyltransferase 1253812..1254483 Flavobacterium psychrophilum JIP02/86 5300544 YP_001295988.1 CDS gldF NC_009613.1 1254484 1255215 D Highly similar to gliding motility protein GldF ofFlavobacterium johnsoniae. ABC transporter, permease (IM), DRI-family, DRB-subfamily, export of unknown substrat, TC 3.A.1.Y.Z; gliding motility protein GldF 1254484..1255215 Flavobacterium psychrophilum JIP02/86 5300545 YP_001295989.1 CDS gldG NC_009613.1 1255215 1256894 D Highly similar to gliding motility protein GldG ofFlavobacterium johnsoniae, a probable membrane-anchored accesory protein of ABC transport system; gliding motility protein GldG 1255215..1256894 Flavobacterium psychrophilum JIP02/86 5299070 YP_001295990.1 CDS dnaN NC_009613.1 1256994 1258112 D DNA polymerase III is a complex, multichain enzymeresponsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, It slides freely (bidirectional and ATP-independent) along duplex DNA (By similarity); DNA polymerase III, beta subunit 1256994..1258112 Flavobacterium psychrophilum JIP02/86 5299071 YP_001295991.1 CDS rhlE NC_009613.1 1258630 1259976 D Similar to putative ATP-dependent RNA helicase RhlE of E. coli; putative ATP-dependent RNA helicase RhlE 1258630..1259976 Flavobacterium psychrophilum JIP02/86 5300749 YP_001295992.1 CDS FP1093 NC_009613.1 1260110 1262038 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 1260110..1262038 Flavobacterium psychrophilum JIP02/86 5300100 YP_001295993.1 CDS pyrC2 NC_009613.1 1262035 1263288 D Pyrimidine metabolism; dihydroorotase 1262035..1263288 Flavobacterium psychrophilum JIP02/86 5300546 YP_001295994.1 CDS FP1095 NC_009613.1 1263290 1263610 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 1263290..1263610 Flavobacterium psychrophilum JIP02/86 5300532 YP_001295995.1 CDS FP1096 NC_009613.1 1263709 1264350 D Similar to predicted esterase COG0400; esterase 1263709..1264350 Flavobacterium psychrophilum JIP02/86 5300547 YP_001295996.1 CDS FP1097 NC_009613.1 1264549 1265016 R Probable exported protein; hypothetical protein complement(1264549..1265016) Flavobacterium psychrophilum JIP02/86 5298879 YP_001295997.1 CDS phnP NC_009613.1 1265023 1265787 R Similar to metal-dependent hydrolase of the beta- lactamase superfamily I COG1235; PhnP protein complement(1265023..1265787) Flavobacterium psychrophilum JIP02/86 5298880 YP_001295998.1 CDS FP1099 NC_009613.1 1265873 1267339 D Similar to protein of unknown function; hypothetical protein 1265873..1267339 Flavobacterium psychrophilum JIP02/86 5300304 YP_001295999.1 CDS FP1100 NC_009613.1 1267402 1267854 R Similar to peroxiredoxin COG1225. Peroxiredoxins are a ubiquitous family of antioxidant proteins; peroxiredoxin complement(1267402..1267854) Flavobacterium psychrophilum JIP02/86 5298881 YP_001296000.1 CDS nth NC_009613.1 1267943 1268599 D Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines, thymines and guanines. Acts on a damaged strand, 5' from the damaged site. Required for the repair of both oxidative DNA damage and spontaneous mutagenic lesions (bys imilarity); DNA-(apurinic or apyrimidinic site) lyase 1267943..1268599 Flavobacterium psychrophilum JIP02/86 5298882 YP_001296001.1 CDS FP1102 NC_009613.1 1268885 1269277 D Similar to protein of unknown function of Streptomyces avermitilis; hypothetical protein 1268885..1269277 Flavobacterium psychrophilum JIP02/86 5300322 YP_001296002.1 CDS FP1103 NC_009613.1 1269289 1270545 R Major Facilitator Superfamily (MFS). TC 2.A.1.Y.Z.; major facilitator superfamily permease complement(1269289..1270545) Flavobacterium psychrophilum JIP02/86 5300339 YP_001296003.1 CDS FP1104 NC_009613.1 1270687 1271331 R Similar to FOG: PAS/PAC domain COG2202; methyl-accepting chemotaxis sensory transducer complement(1270687..1271331) Flavobacterium psychrophilum JIP02/86 5300340 YP_001296004.1 CDS FP1105 NC_009613.1 1271709 1272353 R Similar to FOG: PAS/PAC domain COG2202; methyl-accepting chemotaxis sensory transducer complement(1271709..1272353) Flavobacterium psychrophilum JIP02/86 5300341 YP_001296005.1 CDS FP1106 NC_009613.1 1272708 1273292 R Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor complement(1272708..1273292) Flavobacterium psychrophilum JIP02/86 5300342 YP_001296006.1 CDS uvrA1 NC_009613.1 1273559 1276348 D The UvrABC repair system catalyzes the recognitionand processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate (By similarity); excinuclease ABC subunit A 1273559..1276348 Flavobacterium psychrophilum JIP02/86 5300343 YP_001296007.1 CDS FP1108 NC_009613.1 1276936 1277574 D hypothetical protein 1276936..1277574 Flavobacterium psychrophilum JIP02/86 5299732 YP_001296008.1 CDS FP1109 NC_009613.1 1277694 1278536 R Similar asparaginase COG1446; asparaginase 2 complement(1277694..1278536) Flavobacterium psychrophilum JIP02/86 5300431 YP_001296009.1 CDS cphB NC_009613.1 1278640 1279512 R Exopeptidase that catalyzes the hydrolytic cleavage of multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer) into aspartate-arginine dipeptides (by similarity); cyanophycinase complement(1278640..1279512) Flavobacterium psychrophilum JIP02/86 5300432 YP_001296010.1 CDS cphA NC_009613.1 1279800 1282424 D catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1279800..1282424 Flavobacterium psychrophilum JIP02/86 5300438 YP_001296011.1 CDS pepX2 NC_009613.1 1282525 1284657 D Similar to dipeptidyl peptidase IV of Flavobacterium meningosepticum. Belongs to peptidase family S15; Xaa-Pro dipeptidyl-peptidase 1282525..1284657 Flavobacterium psychrophilum JIP02/86 5300437 YP_001296012.1 CDS FP1113 NC_009613.1 1284764 1286026 R Similar to protein of unknown function of Cytophaga hutchinsonii. Probable exported protein; hypothetical protein complement(1284764..1286026) Flavobacterium psychrophilum JIP02/86 5300486 YP_001296013.1 CDS FP1115 NC_009613.1 1286393 1288996 D Some similarities with predicted membrane protein COG5373; hypothetical protein 1286393..1288996 Flavobacterium psychrophilum JIP02/86 5299931 YP_001296014.1 CDS FP1116 NC_009613.1 1288989 1290212 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 1288989..1290212 Flavobacterium psychrophilum JIP02/86 5300434 YP_001296015.1 CDS FP1117 NC_009613.1 1290418 1290582 D hypothetical protein 1290418..1290582 Flavobacterium psychrophilum JIP02/86 5300264 YP_001296016.1 CDS FP1118 NC_009613.1 1290607 1290759 D hypothetical protein 1290607..1290759 Flavobacterium psychrophilum JIP02/86 5300265 YP_001296017.1 CDS udk NC_009613.1 1290840 1291448 D Pyrimidine salvage pathway; uridine kinase 1290840..1291448 Flavobacterium psychrophilum JIP02/86 5300266 YP_001296018.1 CDS FP1120 NC_009613.1 1291605 1291928 D Probable exported protein; hypothetical protein 1291605..1291928 Flavobacterium psychrophilum JIP02/86 5299816 YP_001296019.1 CDS mutA NC_009613.1 1291954 1293327 D Propionic acid fermentation. Catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates (By similarity); methylmalonyl-CoA mutase small subunit 1291954..1293327 Flavobacterium psychrophilum JIP02/86 5300267 YP_001296020.1 CDS FP1122 NC_009613.1 1293333 1293782 D Probable transmembrane protein; hypothetical protein 1293333..1293782 Flavobacterium psychrophilum JIP02/86 5298997 YP_001296021.1 CDS mutB NC_009613.1 1293787 1295910 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 1293787..1295910 Flavobacterium psychrophilum JIP02/86 5300268 YP_001296022.1 CDS FP1124 NC_009613.1 1296167 1296289 R hypothetical protein complement(1296167..1296289) Flavobacterium psychrophilum JIP02/86 5300701 YP_001296023.1 CDS FP1125 NC_009613.1 1296511 1297128 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1296511..1297128) Flavobacterium psychrophilum JIP02/86 5299485 YP_001296024.1 CDS FP1126 NC_009613.1 1297149 1297529 R Similar to protein of unknown function; hypothetical protein complement(1297149..1297529) Flavobacterium psychrophilum JIP02/86 5299486 YP_001296025.1 CDS lepB NC_009613.1 1297562 1299103 R Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins (by similarity); Signal peptidase I complement(1297562..1299103) Flavobacterium psychrophilum JIP02/86 5299487 YP_001296026.1 CDS dapB NC_009613.1 1299203 1299910 R Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step (by similarity); dihydrodipicolinate reductase complement(1299203..1299910) Flavobacterium psychrophilum JIP02/86 5300116 YP_001296027.1 CDS FP1129 NC_009613.1 1299910 1300488 R Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein complement(1299910..1300488) Flavobacterium psychrophilum JIP02/86 5298534 YP_001296028.1 CDS parB NC_009613.1 1300488 1301384 R Control of plasmid partitioning; required to recognize the cis-acting partition sites (by similarity); chromosome partitioning protein ParB complement(1300488..1301384) Flavobacterium psychrophilum JIP02/86 5299488 YP_001296029.1 CDS parA NC_009613.1 1301388 1302155 R This protein is essential for plasmid partition. It ensures the proper distribution of newly replicated plasmids to daughter cells during cell division. ParA is trans-acting (by similarity); chromosome partitioning protein ParA complement(1301388..1302155) Flavobacterium psychrophilum JIP02/86 5298855 YP_001296030.1 CDS ykuF NC_009613.1 1302568 1303431 R Similar to hypothetical oxidoreductase YkuF of Bacillus subtilis and to mitochondrial 4-dienoyl-CoA reductase; oxidoreductase YkuF complement(1302568..1303431) Flavobacterium psychrophilum JIP02/86 5299262 YP_001296031.1 CDS FP1133 NC_009613.1 1304086 1305414 R Similar to 2-methylthioadenine synthetase COG0621; hypothetical protein complement(1304086..1305414) Flavobacterium psychrophilum JIP02/86 5299149 YP_001296032.1 CDS FP1134 NC_009613.1 1305567 1306742 R sugar phosphate nucleotydyl transferase complement(1305567..1306742) Flavobacterium psychrophilum JIP02/86 5298822 YP_001296033.1 CDS rpmE2 NC_009613.1 1306891 1307142 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(1306891..1307142) Flavobacterium psychrophilum JIP02/86 5298823 YP_001296034.1 CDS FP1136 NC_009613.1 1307474 1308004 D Probable transmembrane protein; hypothetical protein 1307474..1308004 Flavobacterium psychrophilum JIP02/86 5299369 YP_001296035.1 CDS FP1137 NC_009613.1 1308004 1308963 D Similar to glycosyltransferases involved in cell wall biogenesis COG0463; glycosyl transferase, group 2 family protein 1308004..1308963 Flavobacterium psychrophilum JIP02/86 5298824 YP_001296036.1 CDS FP1138 NC_009613.1 1309148 1310875 D Similar to phosphomannomutase COG1109 and phosphoglucomutase COG0033; phosphoglucomutase/phosphomannomutase family protein 1309148..1310875 Flavobacterium psychrophilum JIP02/86 5298825 YP_001296037.1 CDS msbA NC_009613.1 1310875 1312689 D ABC transporter, permease and ATP-binding protein (IM-ABC), DPL-family, LIP-subfamily, lipid A export, TC 3.A.1.106.1; lipid ABC transporter permease/ATPase 1310875..1312689 Flavobacterium psychrophilum JIP02/86 5298826 YP_001296038.1 CDS FP1140 NC_009613.1 1313019 1313720 D Similar to protein of unknown function of Shewanella oneidensis; hypothetical protein 1313019..1313720 Flavobacterium psychrophilum JIP02/86 5299211 YP_001296039.1 CDS FP1141 NC_009613.1 1313717 1314448 R Some similarities with protein of unknown function; hypothetical protein complement(1313717..1314448) Flavobacterium psychrophilum JIP02/86 5299935 YP_001296040.1 CDS FP1142 NC_009613.1 1314621 1317077 R Similar to outer membrane receptor proteins, mostly Fe transport COG1629. TC 1.B.14.Y.Z; outer membrane protein complement(1314621..1317077) Flavobacterium psychrophilum JIP02/86 5299936 YP_001296041.1 CDS FP1143 NC_009613.1 1317084 1318775 R Similar to putative peptidase of Bacteroides; secreted M23/M37 family peptidase complement(1317084..1318775) Flavobacterium psychrophilum JIP02/86 5299937 YP_001296042.1 CDS FP1144 NC_009613.1 1318964 1319254 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1318964..1319254 Flavobacterium psychrophilum JIP02/86 5299938 YP_001296043.1 CDS FP1145 NC_009613.1 1319263 1319556 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1319263..1319556 Flavobacterium psychrophilum JIP02/86 5300041 YP_001296044.1 CDS FP1146 NC_009613.1 1319766 1321328 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1319766..1321328 Flavobacterium psychrophilum JIP02/86 5300042 YP_001296045.1 CDS mutL NC_009613.1 1321482 1323323 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl- directed DNA mismatch repair (by similarity); DNA mismatch repair protein MutL 1321482..1323323 Flavobacterium psychrophilum JIP02/86 5300043 YP_001296046.1 CDS FP1148 NC_009613.1 1323323 1324063 D Similar to uncharacterized membrane protein (homolog of Drosophila rhomboid) COG0705; rhomboid family protein 1323323..1324063 Flavobacterium psychrophilum JIP02/86 5300702 YP_001296047.1 CDS FP1149 NC_009613.1 1324113 1325003 D Similar to rhomboid family protein of the CFB phylum. Probable transmembrane protein; rhomboid family protein 1324113..1325003 Flavobacterium psychrophilum JIP02/86 5300044 YP_001296048.1 CDS FP1150 NC_009613.1 1325121 1326167 D Probable transmembrane protein; hypothetical protein 1325121..1326167 Flavobacterium psychrophilum JIP02/86 5300045 YP_001296049.1 CDS FP1151 NC_009613.1 1326411 1326689 D hypothetical protein 1326411..1326689 Flavobacterium psychrophilum JIP02/86 5300298 YP_001296050.1 CDS FP1152 NC_009613.1 1326720 1327400 R Similar to cAMP-binding proteins - catabolite geneactivator and regulatory subunit of cAMP-dependent protein kinases COG0664. Probably controls the cytochrome cbb3-type terminal oxydase (the cco operon); Crp/Fnr family transcriptional regulator complement(1326720..1327400) Flavobacterium psychrophilum JIP02/86 5300299 YP_001296051.1 CDS ccoI NC_009613.1 1327509 1329887 D May play a role in the uptake and metabolism of copper required for the assembly of the dinuclear center of cytochrome cbb3 oxidase (by similarity); cytochrome cbb3 oxidase maturation protein CcoI 1327509..1329887 Flavobacterium psychrophilum JIP02/86 5300300 YP_001296052.1 CDS ccoS NC_009613.1 1329964 1330161 D May play a role in the assembly of a functional cbb3 oxidase; cytochrome cbb3 oxidase maturation protein CcoS 1329964..1330161 Flavobacterium psychrophilum JIP02/86 5299181 YP_001296053.1 CDS FP1155 NC_009613.1 1330145 1331128 D Similar to eukaryotic acyl-[acyl-carrier-protein] desaturase; acyl-[acyl-carrier-protein] desaturase 1330145..1331128 Flavobacterium psychrophilum JIP02/86 5300365 YP_001296054.1 CDS ccoN/ccoO NC_009613.1 1331188 1333368 D CcoN/CcoO FixN/FixO; putative bifunctional cbb3-type cytochrome c oxidase subunit I/II 1331188..1333368 Flavobacterium psychrophilum JIP02/86 5300301 YP_001296055.1 CDS ccoQ NC_009613.1 1333445 1333636 D Respiratory chain; terminal step. Probable transmembrane protein; cytochrome c oxidase, cbb3-type, subunit IV 1333445..1333636 Flavobacterium psychrophilum JIP02/86 5299182 YP_001296056.1 CDS ccoP NC_009613.1 1333643 1334578 D C-terminal region similar to cytochrome c oxidase diheme subunit. Probable transmembrane protein; cytochrome c oxidase, cbb3-type, subunit III 1333643..1334578 Flavobacterium psychrophilum JIP02/86 5300364 YP_001296057.1 CDS ccoG NC_009613.1 1334583 1336001 D May play a role in the uptake and metabolism of copper required for the assembly of the dinuclear center of cytochrome cbb3 oxidase (by similarity); cytochrome cbb3 oxidase maturation protein CcoG 1334583..1336001 Flavobacterium psychrophilum JIP02/86 5300363 YP_001296058.1 CDS ccoH NC_009613.1 1336022 1336471 D CcoH is required for normal steady-state amount s of the enzyme.; cytochrome cbb3 oxidase maturation protein CcoH 1336022..1336471 Flavobacterium psychrophilum JIP02/86 5299179 YP_001296059.1 CDS FP1161 NC_009613.1 1336563 1337267 D Similar to uncharacterized conserved protein COG2836. Probable transmembrane protein; hypothetical protein 1336563..1337267 Flavobacterium psychrophilum JIP02/86 5299180 YP_001296060.1 CDS FP1162 NC_009613.1 1337294 1337524 D Similar to uncharacterized protein conserved in bacteria COG2841; hypothetical protein 1337294..1337524 Flavobacterium psychrophilum JIP02/86 5299120 YP_001296061.1 CDS hemN NC_009613.1 1337561 1338925 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1337561..1338925) Flavobacterium psychrophilum JIP02/86 5299121 YP_001296062.1 CDS acnA NC_009613.1 1339092 1341356 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1339092..1341356) Flavobacterium psychrophilum JIP02/86 5299619 YP_001296063.1 CDS yueD NC_009613.1 1341836 1342579 R Similar to benzil reductase YueD of Baccilus sp.; Benzil reductase YueD complement(1341836..1342579) Flavobacterium psychrophilum JIP02/86 5299139 YP_001296064.1 CDS FP1166 NC_009613.1 1342593 1343546 R Similar to MoxR-like ATPases COG0714; MoxR family ATPase complement(1342593..1343546) Flavobacterium psychrophilum JIP02/86 5299234 YP_001296065.1 CDS surA NC_009613.1 1344135 1345514 R Assist in the folding of extracytoplasmic proteins(by similarity); peptidyl-prolyl cis-trans isomerase precursor complement(1344135..1345514) Flavobacterium psychrophilum JIP02/86 5299122 YP_001296066.1 CDS FP1168 NC_009613.1 1345518 1347494 R May assist in the folding of extracytoplasmic proteins; peptidyl-prolyl cis-trans isomerase precursor complement(1345518..1347494) Flavobacterium psychrophilum JIP02/86 5299865 YP_001296067.1 CDS FP1169 NC_009613.1 1347642 1349576 R Similar to immunogenic 75 kDa protein PG4 of Porphyromonas gingivalis; OmpA family outer membrane protein complement(1347642..1349576) Flavobacterium psychrophilum JIP02/86 5299123 YP_001296068.1 CDS FP1170 NC_009613.1 1349587 1350501 R Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein complement(1349587..1350501) Flavobacterium psychrophilum JIP02/86 5299124 YP_001296069.1 CDS FP1171 NC_009613.1 1350553 1358940 R hypothetical protein complement(1350553..1358940) Flavobacterium psychrophilum JIP02/86 5298631 YP_001296070.1 CDS prfC NC_009613.1 1359398 1360987 D Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP (by similarity); peptide chain release factor 3 1359398..1360987 Flavobacterium psychrophilum JIP02/86 5298632 YP_001296071.1 CDS FP1173 NC_009613.1 1361039 1361203 D hypothetical protein 1361039..1361203 Flavobacterium psychrophilum JIP02/86 5299104 YP_001296072.1 CDS FP1174 NC_009613.1 1361259 1361567 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1361259..1361567) Flavobacterium psychrophilum JIP02/86 5298633 YP_001296073.1 CDS rpoC NC_009613.1 1361905 1366221 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1361905..1366221) Flavobacterium psychrophilum JIP02/86 5298634 YP_001296074.1 CDS rpoB NC_009613.1 1366514 1370326 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1366514..1370326) Flavobacterium psychrophilum JIP02/86 5300443 YP_001296075.1 CDS rplL NC_009613.1 1370603 1370971 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1370603..1370971) Flavobacterium psychrophilum JIP02/86 5300442 YP_001296076.1 CDS rplJ NC_009613.1 1371024 1371524 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1371024..1371524) Flavobacterium psychrophilum JIP02/86 5300752 YP_001296077.1 CDS rplA NC_009613.1 1371530 1372219 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1371530..1372219) Flavobacterium psychrophilum JIP02/86 5300750 YP_001296078.1 CDS rplK NC_009613.1 1372222 1372665 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1372222..1372665) Flavobacterium psychrophilum JIP02/86 5300923 YP_001296079.1 CDS nusG NC_009613.1 1372728 1373279 R Influences transcription termination and antitermination. Acts as a component of the transcription complex, and interacts with the termination factor rho and RNA polymerase (by similarity); transcription antitermination protein NusG complement(1372728..1373279) Flavobacterium psychrophilum JIP02/86 5300751 YP_001296080.1 CDS secE NC_009613.1 1373290 1373487 R Essential for protein export. Part of the prokaryotic protein translocation apparatus which comprise secA, secB, secD, secE, secF, secG and secY (by similarity); preprotein translocase SecE subunit complement(1373290..1373487) Flavobacterium psychrophilum JIP02/86 5300189 YP_001296081.1 CDS tuf NC_009613.1 1373637 1374824 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(1373637..1374824) Flavobacterium psychrophilum JIP02/86 5299918 YP_001296082.1 CDS FP1188 NC_009613.1 1375427 1375729 R Similar to ribosome-associated protein Y (PSrp-1) COG1544; hypothetical protein complement(1375427..1375729) Flavobacterium psychrophilum JIP02/86 5299916 YP_001296083.1 CDS xerC NC_009613.1 1375763 1376659 R Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convertdimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity); tyrosine recombinase XerC complement(1375763..1376659) Flavobacterium psychrophilum JIP02/86 5298941 YP_001296084.1 CDS rpsU NC_009613.1 1376727 1376924 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1376727..1376924) Flavobacterium psychrophilum JIP02/86 5300621 YP_001296085.1 CDS FP1191 NC_009613.1 1377161 1378330 R Similar to Acyl-CoA dehydrogenase COG1960; Acyl-CoA dehydrogenase family protein complement(1377161..1378330) Flavobacterium psychrophilum JIP02/86 5298779 YP_001296086.1 CDS FP1192 NC_009613.1 1378374 1379249 R Some similarities with ComEA, DNA uptake protein and related DNA-binding proteins COG1555; hypothetical protein complement(1378374..1379249) Flavobacterium psychrophilum JIP02/86 5298942 YP_001296087.1 CDS FP1193 NC_009613.1 1379253 1379480 R hypothetical protein complement(1379253..1379480) Flavobacterium psychrophilum JIP02/86 5298943 YP_001296088.1 CDS FP1194 NC_009613.1 1379599 1380867 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1379599..1380867) Flavobacterium psychrophilum JIP02/86 5298944 YP_001296089.1 CDS dnaQ NC_009613.1 1381106 1381588 R DNA polymerase III is a complex, multichain enzymeresponsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function andis a proofreading 3'-5' exonuclease (by similarity); DNA polymerase III, epsilon subunit complement(1381106..1381588) Flavobacterium psychrophilum JIP02/86 5298945 YP_001296090.1 CDS FP1196 NC_009613.1 1382269 1383630 R Similar to cysteine synthase COG0031; cysteine synthase/cystathionine beta-synthase family protein complement(1382269..1383630) Flavobacterium psychrophilum JIP02/86 5300854 YP_001296091.1 CDS FP1197 NC_009613.1 1383824 1385746 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1383824..1385746) Flavobacterium psychrophilum JIP02/86 5299779 YP_001296092.1 CDS FP1198 NC_009613.1 1385838 1387445 R Similar to proteins of unknown function of Bacteroides thetaiotaomicron. Probable lipoprotein; hypothetical protein complement(1385838..1387445) Flavobacterium psychrophilum JIP02/86 5299780 YP_001296093.1 CDS FP1199 NC_009613.1 1387451 1390633 R Similar to outer membrane protein Omp121. TC 1.B.14.6.2; Omp121 family outer membrane protein complement(1387451..1390633) Flavobacterium psychrophilum JIP02/86 5299781 YP_001296094.1 CDS rnhB NC_009613.1 1390833 1391492 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1390833..1391492 Flavobacterium psychrophilum JIP02/86 5299782 YP_001296095.1 CDS lipB NC_009613.1 1391519 1392217 R Catalyzes the transfer of the endogenously synthesized lipoate to apoproteins, creating an amide linkage that joins the free carboxyl group of lipoic acid to the epsilon-amino group of a specific lysine residue in lipoate-dependent enzymes (By similarity); lipoyltransferase complement(1391519..1392217) Flavobacterium psychrophilum JIP02/86 5299742 YP_001296096.1 CDS lysS NC_009613.1 1392526 1394217 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1392526..1394217 Flavobacterium psychrophilum JIP02/86 5299294 YP_001296097.1 CDS FP1203 NC_009613.1 1394454 1394798 D hypothetical protein 1394454..1394798 Flavobacterium psychrophilum JIP02/86 5299586 YP_001296098.1 CDS hemL NC_009613.1 1395361 1396647 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(1395361..1396647) Flavobacterium psychrophilum JIP02/86 5299440 YP_001296099.1 CDS FP1205 NC_009613.1 1396716 1397579 R Central region similar to muramidase (flagellum- specific) COG1705 and C-terminal region similar to LysM repeat COG1388; putative muramidase complement(1396716..1397579) Flavobacterium psychrophilum JIP02/86 5300527 YP_001296100.1 CDS acdS NC_009613.1 1397572 1398474 R Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1- carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source (by similarity); 1-aminocyclopropane-1-carboxylate deaminase complement(1397572..1398474) Flavobacterium psychrophilum JIP02/86 5299441 YP_001296101.1 CDS FP1207 NC_009613.1 1398992 1399393 R Similar to predicted thioesterase COG0824; hypothetical protein complement(1398992..1399393) Flavobacterium psychrophilum JIP02/86 5299138 YP_001296102.1 CDS dnaA NC_009613.1 1399584 1401020 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1399584..1401020 Flavobacterium psychrophilum JIP02/86 5299442 YP_001296103.1 CDS FP1209 NC_009613.1 1401042 1401482 D low molecular weight phosphotyrosine protein phosphatase 1401042..1401482 Flavobacterium psychrophilum JIP02/86 5298963 YP_001296104.1 CDS FP1210 NC_009613.1 1401489 1402205 D Similar to predicted methyltransferase COG0313; methyltransferase 1401489..1402205 Flavobacterium psychrophilum JIP02/86 5299443 YP_001296105.1 CDS FP1211 NC_009613.1 1402202 1402843 R Some similarities with LysM domain proteins; hypothetical protein complement(1402202..1402843) Flavobacterium psychrophilum JIP02/86 5299444 YP_001296106.1 CDS FP1212 NC_009613.1 1402952 1403866 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1402952..1403866) Flavobacterium psychrophilum JIP02/86 5298989 YP_001296107.1 CDS FP1213 NC_009613.1 1403869 1404900 R Similar to predicted periplasmic solute-binding protein COG1559; hypothetical protein complement(1403869..1404900) Flavobacterium psychrophilum JIP02/86 5298990 YP_001296108.1 CDS FP1214 NC_009613.1 1404906 1405439 R Acetylation of N-terminal amino-acid of ribosomal protein; ribosomal-protein-amino-adic N-acetyltransferase complement(1404906..1405439) Flavobacterium psychrophilum JIP02/86 5298991 YP_001296109.1 CDS dapF NC_009613.1 1405450 1406220 R Amino-acid biosynthesis; L-lysine biosynthesis viaDAP pathway; DL-diaminopimelate from LL- diaminopimelate: single step (by similarity); diaminopimelate epimerase complement(1405450..1406220) Flavobacterium psychrophilum JIP02/86 5298992 YP_001296110.1 CDS degQ NC_009613.1 1406495 1407880 D Similar to protease DegQ precursor of E. coli; protease DegQ precursor 1406495..1407880 Flavobacterium psychrophilum JIP02/86 5298536 YP_001296111.1 CDS gapA2 NC_009613.1 1408133 1409581 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1408133..1409581 Flavobacterium psychrophilum JIP02/86 5299105 YP_001296112.1 CDS FP1218 NC_009613.1 1409701 1410927 R N-terminal region weakly similar to LysM repeat COG1388 and C-terminal region similar to cell wall- associated hydrolases (invasion-associated proteins) COG0791; hypothetical protein complement(1409701..1410927) Flavobacterium psychrophilum JIP02/86 5300331 YP_001296113.1 CDS yqfO NC_009613.1 1411257 1412372 D Similar to protein of unknown function YqfO of Bacillus subtilis; hypothetical protein 1411257..1412372 Flavobacterium psychrophilum JIP02/86 5299430 YP_001296114.1 CDS FP1220 NC_009613.1 1412375 1413154 D Similar to Zn-ribbon protein, possibly nucleic acid- binding COG1579; hypothetical protein 1412375..1413154 Flavobacterium psychrophilum JIP02/86 5299231 YP_001296115.1 CDS FP1221 NC_009613.1 1413187 1414032 D Some similarities with predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) COG0596; hypothetical protein 1413187..1414032 Flavobacterium psychrophilum JIP02/86 5299431 YP_001296116.1 CDS FP1222 NC_009613.1 1414268 1415068 D Similar to 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases COG1187; pseudouridylate synthase 1414268..1415068 Flavobacterium psychrophilum JIP02/86 5299432 YP_001296117.1 CDS FP1223 NC_009613.1 1415170 1415850 D Voltage-gated Ion Channel (VIC) Superfamily protein. TC 1.A.1.Y.Z; ion transporter 1415170..1415850 Flavobacterium psychrophilum JIP02/86 5299433 YP_001296118.1 CDS FP1224 NC_009613.1 1416018 1416656 D Similar to protein of unknown function of Francisella tularensis and Desulfotalea psychrophila. Probable transmembrane protein; hypothetical protein 1416018..1416656 Flavobacterium psychrophilum JIP02/86 5299434 YP_001296119.1 CDS FP1225 NC_009613.1 1416989 1418125 D Probable exported protein; hypothetical protein 1416989..1418125 Flavobacterium psychrophilum JIP02/86 5299017 YP_001296120.1 CDS FP1226 NC_009613.1 1418479 1418772 D Similar to uncharacterized protein conserved in bacteria COG4680; hypothetical protein 1418479..1418772 Flavobacterium psychrophilum JIP02/86 5299018 YP_001296121.1 CDS FP1227 NC_009613.1 1418778 1419137 D Similar to predicted transcription regulator containing HTH domain COG5499; XRE family transcriptional regulator 1418778..1419137 Flavobacterium psychrophilum JIP02/86 5299019 YP_001296122.1 CDS mscS3 NC_009613.1 1419163 1419960 R Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation.; small-conductance mechanosensitive ionchannel MscS3 complement(1419163..1419960) Flavobacterium psychrophilum JIP02/86 5299020 YP_001296123.1 CDS FP1229 NC_009613.1 1420001 1421563 R Similar to uncharacterized FAD-dependent dehydrogenases COG2509; FAD-dependent dehydrogenase complement(1420001..1421563) Flavobacterium psychrophilum JIP02/86 5299863 YP_001296124.1 CDS FP1230 NC_009613.1 1421581 1421847 R Similar to cytotoxic translational repressor of toxin-antitoxin stability system of Crocosphaera watsonii; hypothetical protein complement(1421581..1421847) Flavobacterium psychrophilum JIP02/86 5299661 YP_001296125.1 CDS FP1231 NC_009613.1 1421844 1422095 R hypothetical protein complement(1421844..1422095) Flavobacterium psychrophilum JIP02/86 5299662 YP_001296126.1 CDS FP1232 NC_009613.1 1422194 1422433 D hypothetical protein 1422194..1422433 Flavobacterium psychrophilum JIP02/86 5299663 YP_001296127.1 CDS recQ1 NC_009613.1 1423102 1425297 R Involved in the recF recombination pathway; its gene expression is under the regulation of the SOS system. It is a DNA helicase (by similarity); ATP-dependent DNA helicase RecQ1 complement(1423102..1425297) Flavobacterium psychrophilum JIP02/86 5299664 YP_001296128.1 CDS kdsD NC_009613.1 1425425 1426348 D Lipopolysaccharide biosynthesis; KDO biosynthesis;first step (by similarity); arabinose-5-phosphate isomerase 1425425..1426348 Flavobacterium psychrophilum JIP02/86 5300214 YP_001296129.1 CDS tatC NC_009613.1 1426348 1427172 D Required for correct localization of precursor proteins bearing signal peptides with the twin arginine conserved motif S/T-R-R-X-F-L-K. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export (by similarity); Sec-independent protein secretion pathway component TatC 1426348..1427172 Flavobacterium psychrophilum JIP02/86 5300764 YP_001296130.1 CDS FP1236 NC_009613.1 1427153 1427500 D Similar to uncharacterized homolog of gamma- carboxymuconolactone decarboxylase subunit COG0599; hypothetical protein 1427153..1427500 Flavobacterium psychrophilum JIP02/86 5299694 YP_001296131.1 CDS yhbG NC_009613.1 1427585 1428325 D ABC transporter, ATP-binding protein (ABC), YHBG family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase 1427585..1428325 Flavobacterium psychrophilum JIP02/86 5299665 YP_001296132.1 CDS yegX NC_009613.1 1428942 1429757 R Similar to protein of unknown function YegX of Escherichia coli, Lyzozyme M1 (1,4-beta-N- acetylmuramidase) COG3757; hypothetical protein complement(1428942..1429757) Flavobacterium psychrophilum JIP02/86 5299029 YP_001296133.1 CDS pssA NC_009613.1 1429765 1430478 R Phosphatidylserine synthase; CDP-diacylglycerol--serineO- phosphatidyltransfera se complement(1429765..1430478) Flavobacterium psychrophilum JIP02/86 5300961 YP_001296134.1 CDS FP1240 NC_009613.1 1430586 1431662 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 1430586..1431662 Flavobacterium psychrophilum JIP02/86 5300642 YP_001296135.1 CDS FP1241 NC_009613.1 1431673 1432773 D Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein 1431673..1432773 Flavobacterium psychrophilum JIP02/86 5298725 YP_001296136.1 CDS FP1242 NC_009613.1 1432896 1433618 R Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein complement(1432896..1433618) Flavobacterium psychrophilum JIP02/86 5298726 YP_001296137.1 CDS FP1243 NC_009613.1 1433801 1434706 R Similar to putative peptidase (YtmA protein) of Bacillus subtilis; peptidase complement(1433801..1434706) Flavobacterium psychrophilum JIP02/86 5298727 YP_001296138.1 CDS FP1244 NC_009613.1 1434766 1436160 R Some similarities with sugar transferases involvedin lipopolysaccharide synthesis COG2148; glycosyl transferase complement(1434766..1436160) Flavobacterium psychrophilum JIP02/86 5298728 YP_001296139.1 CDS FP1245 NC_009613.1 1436201 1437553 R Probable transmembrane protein. Putative transporter; hypothetical protein complement(1436201..1437553) Flavobacterium psychrophilum JIP02/86 5299454 YP_001296140.1 CDS FP1246 NC_009613.1 1437543 1438622 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(1437543..1438622) Flavobacterium psychrophilum JIP02/86 5299455 YP_001296141.1 CDS FP1247 NC_009613.1 1438619 1439737 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(1438619..1439737) Flavobacterium psychrophilum JIP02/86 5299456 YP_001296142.1 CDS FP1248 NC_009613.1 1439734 1440288 R Similar to serine acetyltransferase COG1045; hexapeptide transferase family protein complement(1439734..1440288) Flavobacterium psychrophilum JIP02/86 5299457 YP_001296143.1 CDS FP1249 NC_009613.1 1440294 1441100 R methyltransferase complement(1440294..1441100) Flavobacterium psychrophilum JIP02/86 5299458 YP_001296144.1 CDS FP1250 NC_009613.1 1441102 1442094 R Similar to predicted glycosyltransferases COG1216; glycosyl transferase, group 2 family protein complement(1441102..1442094) Flavobacterium psychrophilum JIP02/86 5300391 YP_001296145.1 CDS FP1251 NC_009613.1 1442091 1443638 R glycosyl transferase, group 2 family protein complement(1442091..1443638) Flavobacterium psychrophilum JIP02/86 5300392 YP_001296146.1 CDS FP1252 NC_009613.1 1443635 1444774 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(1443635..1444774) Flavobacterium psychrophilum JIP02/86 5300393 YP_001296147.1 CDS FP1253 NC_009613.1 1444776 1445336 R Weakly similar to serine acetyltransferase COG1045; hexapeptide transferase family protein complement(1444776..1445336) Flavobacterium psychrophilum JIP02/86 5300394 YP_001296148.1 CDS FP1254 NC_009613.1 1445329 1446900 R hypothetical protein complement(1445329..1446900) Flavobacterium psychrophilum JIP02/86 5300877 YP_001296149.1 CDS neuC NC_009613.1 1446900 1448024 R Probably involved in capsular polysaccharide biosynthesis. Catalyzes the conversion of UDP-N- acetylglucosamine into UDP-N-acetylmannosamine; UDP-N-acetylglucosamine 2-epimerase complement(1446900..1448024) Flavobacterium psychrophilum JIP02/86 5300878 YP_001296150.1 CDS neuB NC_009613.1 1448067 1449107 R Probably involved in capsular polysaccharide biosynthesis. NeuB is the prokaryotic N-acetylneuraminic acid (Neu5Ac) synthase. It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N- acetylmannosamine (ManNAc); sialic acid synthase (N-acetylneuraminic acid synthetase) complement(1448067..1449107) Flavobacterium psychrophilum JIP02/86 5298850 YP_001296151.1 CDS neuA NC_009613.1 1449127 1449798 R Probably involved in capsular polysaccharide biosynthesis; N-acylneuraminate cytidylyltransferase complement(1449127..1449798) Flavobacterium psychrophilum JIP02/86 5300197 YP_001296152.1 CDS FP1258 NC_009613.1 1449862 1450695 R Similar to glycosyltransferases COG0463 COG1216; glycosyl transferase, group 2 family protein complement(1449862..1450695) Flavobacterium psychrophilum JIP02/86 5300196 YP_001296153.1 CDS FP1259 NC_009613.1 1450692 1451903 R hypothetical protein complement(1450692..1451903) Flavobacterium psychrophilum JIP02/86 5300879 YP_001296154.1 CDS FP1260 NC_009613.1 1451905 1452819 R glycosyl transferase, group 2 family protein complement(1451905..1452819) Flavobacterium psychrophilum JIP02/86 5300880 YP_001296155.1 CDS FP1261 NC_009613.1 1452809 1453711 R Similar to glycosyltransferases COG0463 COG1215 COG1216; glycosyl transferase, group 2 family protein complement(1452809..1453711) Flavobacterium psychrophilum JIP02/86 5300881 YP_001296156.1 CDS FP1262 NC_009613.1 1453724 1454980 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(1453724..1454980) Flavobacterium psychrophilum JIP02/86 5300957 YP_001296157.1 CDS FP1263 NC_009613.1 1454989 1456005 R Similar to uncharacterized protein conserved in bacteria COG3274. Probable transmembrane protein; hypothetical protein complement(1454989..1456005) Flavobacterium psychrophilum JIP02/86 5300958 YP_001296158.1 CDS FP1264 NC_009613.1 1456021 1457019 R Similar to glycosyltransferases involved in cell wall biogenesis COG0463; glycosyl transferase, group 2 family protein complement(1456021..1457019) Flavobacterium psychrophilum JIP02/86 5300959 YP_001296159.1 CDS FP1265 NC_009613.1 1457013 1458170 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(1457013..1458170) Flavobacterium psychrophilum JIP02/86 5300960 YP_001296160.1 CDS FP1266 NC_009613.1 1458163 1459281 R catalyzes the formation of dTDP-D-fucosamine from dTDP-4-oxo-6-deoxy-D-glucose in enterobacterial common antigen biosynthesis; TDP-4-oxo-6-deoxy-D-glucose transaminase complement(1458163..1459281) Flavobacterium psychrophilum JIP02/86 5299012 YP_001296161.1 CDS neuD NC_009613.1 1459281 1459910 R Probable acetyltransferase involved in lipopolysaccharide O-antigen biosynthesis; hypothetical protein complement(1459281..1459910) Flavobacterium psychrophilum JIP02/86 5299013 YP_001296162.1 CDS FP1268 NC_009613.1 1459915 1460601 R Similar to protein of unknown function; hypothetical protein complement(1459915..1460601) Flavobacterium psychrophilum JIP02/86 5298851 YP_001296163.1 CDS FP1269 NC_009613.1 1460605 1461864 R ABC transporter, ATP-binding protein (ABC), CLS- family, polysaccharide/polyol phosphate export, TC 3.A.1.Y.Z; polysaccharide/polyol phosphate ABC transporter ATPase complement(1460605..1461864) Flavobacterium psychrophilum JIP02/86 5299014 YP_001296164.1 CDS FP1270 NC_009613.1 1461885 1462742 R ABC transporter, permease (IM), CLS-family, polysaccharide/polyol phosphate export, TC 3.A.1.Y.Z; polysaccharide/polyol phosphate ABC transporter permease complement(1461885..1462742) Flavobacterium psychrophilum JIP02/86 5299015 YP_001296165.1 CDS FP1271 NC_009613.1 1463319 1464224 R hypothetical protein complement(1463319..1464224) Flavobacterium psychrophilum JIP02/86 5299016 YP_001296166.1 CDS FP1272 NC_009613.1 1464793 1465389 D Start doubtful, the first ATG was choosen. Putative exported protein; hypothetical protein 1464793..1465389 Flavobacterium psychrophilum JIP02/86 5298781 YP_001296167.1 CDS FP1273 NC_009613.1 1465386 1466084 D hypothetical protein 1465386..1466084 Flavobacterium psychrophilum JIP02/86 5298782 YP_001296168.1 CDS FP1274 NC_009613.1 1466539 1467264 D Similar to capsular polysaccharide biosynthesis protein COG4464; capsular polysaccharide biosynthesis protein 1466539..1467264 Flavobacterium psychrophilum JIP02/86 5298783 YP_001296169.1 CDS FP1275 NC_009613.1 1467299 1469659 R Probable transmembrane protein similar to tyrosine- protein kinase Wzc of Escherichia coli; tyrosine-protein kinase involved in exopolysaccharide biosynthesis complement(1467299..1469659) Flavobacterium psychrophilum JIP02/86 5298784 YP_001296170.1 CDS FP1276 NC_009613.1 1469668 1470465 R Some similarities with periplasmic protein involved in polysaccharide export COG1596. Probable transmembraneprotein; polysaccharide exporter precursor complement(1469668..1470465) Flavobacterium psychrophilum JIP02/86 5298785 YP_001296171.1 CDS wbpM NC_009613.1 1470521 1472488 R Lipopolysaccharide O-antigen biosynthesis; UDP-D- Qui2NAc biosynthesis; 1 and 2nd steps; WbpM protein involved in UDP-D-Qui2NAc biosynthesis (a nucleotide sugar precursor for antigen-O biosynthesis) complement(1470521..1472488) Flavobacterium psychrophilum JIP02/86 5299003 YP_001296172.1 CDS FP1278 NC_009613.1 1472754 1473893 R Similar to predicted pyridoxal phosphate- dependentenzyme apparently involved in regulation of cell wall biogenesis COG0399; aminotransferase complement(1472754..1473893) Flavobacterium psychrophilum JIP02/86 5300712 YP_001296173.1 CDS FP1279 NC_009613.1 1473886 1474035 R Some similarities with putative acetyltransferases; putative acetyltransferase complement(1473886..1474035) Flavobacterium psychrophilum JIP02/86 5299004 YP_001296174.1 CDS FP1280 NC_009613.1 1474113 1474766 R Weakly similar to predicted phosphoesterase COG0622; hypothetical protein complement(1474113..1474766) Flavobacterium psychrophilum JIP02/86 5299005 YP_001296175.1 CDS FP1281 NC_009613.1 1474763 1475647 R Similar to nucleoside-diphosphate-sugar epimerasesCOG0451; nucleoside-diphosphate-sugar epimerase complement(1474763..1475647) Flavobacterium psychrophilum JIP02/86 5299006 YP_001296176.1 CDS FP1282 NC_009613.1 1475644 1476690 R undetermined role; similar to CarB protein but much smaller; carbamoyl phosphate synthase-like protein complement(1475644..1476690) Flavobacterium psychrophilum JIP02/86 5300538 YP_001296177.1 CDS wcgN NC_009613.1 1476693 1477301 R Lipopolysaccharide O-antigen biosynthesis; sugar phosphate transferase; putative undecaprenyl-phosphate glycosyl-1-phosphate transferase complement(1476693..1477301) Flavobacterium psychrophilum JIP02/86 5300539 YP_001296178.1 CDS wbuB NC_009613.1 1477294 1478496 R Similar to putative L-fucosamine transferase WbuB of Escherichia coli; L-fucosamine transferase complement(1477294..1478496) Flavobacterium psychrophilum JIP02/86 5300629 YP_001296179.1 CDS fnlC NC_009613.1 1478501 1479637 R Lipopolysaccharide O-antigen biosynthesis; UDP-L- FucpNAc biosynthesis; 5th step; UDP-L-FucpNAc biosynthesis protein FnlC complement(1478501..1479637) Flavobacterium psychrophilum JIP02/86 5300627 YP_001296180.1 CDS fnlB NC_009613.1 1479649 1480767 R Lipopolysaccharide O-antigen biosynthesis; UDP-L- FucpNAc biosynthesis; 4th step; UDP-L-FucpNAc biosynthesis protein FnlB complement(1479649..1480767) Flavobacterium psychrophilum JIP02/86 5300015 YP_001296181.1 CDS FP1287 NC_009613.1 1480791 1481201 R Probably involved in extracellular polysaccharide biosynthesis; putative sugar epimerase complement(1480791..1481201) Flavobacterium psychrophilum JIP02/86 5300014 YP_001296182.1 CDS fnlA NC_009613.1 1481203 1482246 R Lipopolysaccharide O-antigen biosynthesis; UDP-L- FucpNAc biosynthesis; 1, 2 and 3rd steps; UDP-L-FucpNAc biosynthesis protein FnlA complement(1481203..1482246) Flavobacterium psychrophilum JIP02/86 5300540 YP_001296183.1 CDS wbuA NC_009613.1 1482248 1483048 R Similar to putative rhamnosyl transferase WbuA of Escherichia coli; rhamnosyl transferase complement(1482248..1483048) Flavobacterium psychrophilum JIP02/86 5300013 YP_001296184.1 CDS FP1290 NC_009613.1 1483205 1484488 R Probable transmembrane protein. Putative transporter involved in extracellular polysaccharide biosynthesis; hypothetical protein complement(1483205..1484488) Flavobacterium psychrophilum JIP02/86 5300626 YP_001296185.1 CDS FP1291 NC_009613.1 1484509 1485957 R Similar to membrane protein involved in the exportof O-antigen COG2244; polysaccharide export protein complement(1484509..1485957) Flavobacterium psychrophilum JIP02/86 5300541 YP_001296186.1 CDS FP1292 NC_009613.1 1486164 1487204 R Probable transmembrane protein, weakly similar to Eps11O protein of Streptococcus thermophilus; hypothetical protein complement(1486164..1487204) Flavobacterium psychrophilum JIP02/86 5300542 YP_001296187.1 CDS rmlA NC_009613.1 1487268 1488149 R Lipopolysaccharide O-antigen biosynthesis; dTDP-L- rhamnose biosynthesis; first step; glucose-1-phosphate thymidylyltransferase complement(1487268..1488149) Flavobacterium psychrophilum JIP02/86 5298584 YP_001296188.1 CDS rmlB NC_009613.1 1488218 1489264 R Lipopolysaccharide O-antigen biosynthesis; dTDP-L- rhamnose biosynthesis; second step; dTDP-glucose 4,6-dehydratase complement(1488218..1489264) Flavobacterium psychrophilum JIP02/86 5299735 YP_001296189.1 CDS ugd NC_009613.1 1489271 1490647 R Lipid A modification with 4-amino-4-deoxy-L- arabinose; step 1 (by similarity); UDP-glucose 6-dehydrogenase complement(1489271..1490647) Flavobacterium psychrophilum JIP02/86 5299736 YP_001296190.1 CDS wbpO NC_009613.1 1490679 1491950 R Similar to WbpO protein of Pseudomonas aeruginosa involved in lipopolysaccharide O antigen biosynthetic; UDP-N-acetyl-D-galactosamine dehydrogenase complement(1490679..1491950) Flavobacterium psychrophilum JIP02/86 5299789 YP_001296191.1 CDS wbpP NC_009613.1 1491961 1492941 R Similar to WbpP protein of Pseudomonas aeruginosa involved in lipopolysaccharide O antigen biosynthetic; UDP-N-acetylglucosamine C4 epimerase complement(1491961..1492941) Flavobacterium psychrophilum JIP02/86 5300713 YP_001296192.1 CDS FP1298 NC_009613.1 1492945 1495392 R Probable transmembrane protein similar to tyrosine- protein kinase Wzc of Escherichia coli; tyrosine-protein kinase involved in exopolysaccharide biosynthesis complement(1492945..1495392) Flavobacterium psychrophilum JIP02/86 5300714 YP_001296193.1 CDS FP1299 NC_009613.1 1495402 1496190 R Similar to putative capsular polysaccharide transport protein. Probable transmembrane protein; polysaccharide exporter complement(1495402..1496190) Flavobacterium psychrophilum JIP02/86 5298585 YP_001296194.1 CDS recR NC_009613.1 1496265 1496885 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1496265..1496885) Flavobacterium psychrophilum JIP02/86 5298586 YP_001296195.1 CDS FP1301 NC_009613.1 1496997 1498493 D Solute:Sodium Symporter (SSS) Family, TC 2.A.21.Y.Z; Sodium:solute symporter 1496997..1498493 Flavobacterium psychrophilum JIP02/86 5300216 YP_001296196.1 CDS FP1302 NC_009613.1 1498656 1499021 R Similar to predicted CoA-binding protein COG1832; hypothetical protein complement(1498656..1499021) Flavobacterium psychrophilum JIP02/86 5298587 YP_001296197.1 CDS FP1303 NC_009613.1 1499150 1499773 D The 6 TMS Putative MarC Transporter (MarC) Family.TC 9.B.10.Y.Z; MarC family integral membrane protein precursor 1499150..1499773 Flavobacterium psychrophilum JIP02/86 5298588 YP_001296198.1 CDS FP1304 NC_009613.1 1499834 1500769 R Similar to uncharacterized protein conserved in bacteria containing a pentein-type domain COG4874; hypothetical protein complement(1499834..1500769) Flavobacterium psychrophilum JIP02/86 5300788 YP_001296199.1 CDS FP1305 NC_009613.1 1500834 1500974 R hypothetical protein complement(1500834..1500974) Flavobacterium psychrophilum JIP02/86 5300789 YP_001296200.1 CDS FP1306 NC_009613.1 1500980 1501192 R Some similarities with S23 ribosomal protein; hypothetical protein complement(1500980..1501192) Flavobacterium psychrophilum JIP02/86 5300790 YP_001296201.1 CDS FP1307 NC_009613.1 1501347 1502261 R Similar to N-Dimethylarginine dimethylaminohydrolase COG1834; amidinotransferase family protein complement(1501347..1502261) Flavobacterium psychrophilum JIP02/86 5300791 YP_001296202.1 CDS gltA NC_009613.1 1502341 1503624 R Tricarboxylic acid cycle; citrate (Si)-synthase complement(1502341..1503624) Flavobacterium psychrophilum JIP02/86 5300792 YP_001296203.1 CDS eno NC_009613.1 1504148 1505437 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(1504148..1505437) Flavobacterium psychrophilum JIP02/86 5300244 YP_001296204.1 CDS FP1310 NC_009613.1 1505548 1508034 R N-terminal region similar to YbfO protein of Bacillus subtilis and C-terminal region similar to putative outer membrane protein, probably involved in nutrient bindingof Bacteroides sp.; hypothetical protein complement(1505548..1508034) Flavobacterium psychrophilum JIP02/86 5299986 YP_001296205.1 CDS carA NC_009613.1 1508039 1509145 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1508039..1509145) Flavobacterium psychrophilum JIP02/86 5298499 YP_001296206.1 CDS rplQ NC_009613.1 1509447 1509935 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(1509447..1509935) Flavobacterium psychrophilum JIP02/86 5300199 YP_001296207.1 CDS rpoA NC_009613.1 1510000 1510992 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(1510000..1510992) Flavobacterium psychrophilum JIP02/86 5300651 YP_001296208.1 CDS rpsD NC_009613.1 1511017 1511622 R primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 complement(1511017..1511622) Flavobacterium psychrophilum JIP02/86 5300441 YP_001296209.1 CDS rpsK NC_009613.1 1511714 1512097 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(1511714..1512097) Flavobacterium psychrophilum JIP02/86 5300916 YP_001296210.1 CDS rpsM NC_009613.1 1512106 1512480 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(1512106..1512480) Flavobacterium psychrophilum JIP02/86 5298592 YP_001296211.1 CDS rpmJ NC_009613.1 1512483 1512599 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(1512483..1512599) Flavobacterium psychrophilum JIP02/86 5300250 YP_001296212.1 CDS infA NC_009613.1 1512603 1512818 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(1512603..1512818) Flavobacterium psychrophilum JIP02/86 5300440 YP_001296213.1 CDS secY NC_009613.1 1512820 1514163 R forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY complement(1512820..1514163) Flavobacterium psychrophilum JIP02/86 5299560 YP_001296214.1 CDS rplO NC_009613.1 1514175 1514627 R late assembly protein; 50S ribosomal protein L15 complement(1514175..1514627) Flavobacterium psychrophilum JIP02/86 5299833 YP_001296215.1 CDS rpmD NC_009613.1 1514640 1514822 R L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 complement(1514640..1514822) Flavobacterium psychrophilum JIP02/86 5300649 YP_001296216.1 CDS rpsE NC_009613.1 1514835 1515359 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(1514835..1515359) Flavobacterium psychrophilum JIP02/86 5300589 YP_001296217.1 CDS rplR NC_009613.1 1515366 1515716 R 50S ribosomal protein L18 complement(1515366..1515716) Flavobacterium psychrophilum JIP02/86 5300917 YP_001296218.1 CDS rplF NC_009613.1 1515728 1516273 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(1515728..1516273) Flavobacterium psychrophilum JIP02/86 5300652 YP_001296219.1 CDS rpsH NC_009613.1 1516290 1516688 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(1516290..1516688) Flavobacterium psychrophilum JIP02/86 5300814 YP_001296220.1 CDS rpsN NC_009613.1 1516826 1517095 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(1516826..1517095) Flavobacterium psychrophilum JIP02/86 5298589 YP_001296221.1 CDS rplE NC_009613.1 1517099 1517650 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(1517099..1517650) Flavobacterium psychrophilum JIP02/86 5300251 YP_001296222.1 CDS rplX NC_009613.1 1517653 1517967 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(1517653..1517967) Flavobacterium psychrophilum JIP02/86 5300813 YP_001296223.1 CDS rplN NC_009613.1 1517980 1518348 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(1517980..1518348) Flavobacterium psychrophilum JIP02/86 5300619 YP_001296224.1 CDS rpsQ NC_009613.1 1518351 1518611 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(1518351..1518611) Flavobacterium psychrophilum JIP02/86 5300754 YP_001296225.1 CDS rpmC NC_009613.1 1518629 1518820 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(1518629..1518820) Flavobacterium psychrophilum JIP02/86 5300254 YP_001296226.1 CDS rplP NC_009613.1 1518832 1519257 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(1518832..1519257) Flavobacterium psychrophilum JIP02/86 5300588 YP_001296227.1 CDS rpsC NC_009613.1 1519278 1520039 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(1519278..1520039) Flavobacterium psychrophilum JIP02/86 5300650 YP_001296228.1 CDS rplV NC_009613.1 1520041 1520454 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(1520041..1520454) Flavobacterium psychrophilum JIP02/86 5300915 YP_001296229.1 CDS rpsS NC_009613.1 1520461 1520739 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(1520461..1520739) Flavobacterium psychrophilum JIP02/86 5300617 YP_001296230.1 CDS rplB NC_009613.1 1520746 1521570 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(1520746..1521570) Flavobacterium psychrophilum JIP02/86 5298777 YP_001296231.1 CDS rplW NC_009613.1 1521580 1521870 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(1521580..1521870) Flavobacterium psychrophilum JIP02/86 5300924 YP_001296232.1 CDS rplD NC_009613.1 1521877 1522506 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(1521877..1522506) Flavobacterium psychrophilum JIP02/86 5300618 YP_001296233.1 CDS rplC NC_009613.1 1522506 1523123 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(1522506..1523123) Flavobacterium psychrophilum JIP02/86 5300812 YP_001296234.1 CDS rpsJ NC_009613.1 1523230 1523535 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(1523230..1523535) Flavobacterium psychrophilum JIP02/86 5300811 YP_001296235.1 CDS fusA NC_009613.1 1523547 1525703 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(1523547..1525703) Flavobacterium psychrophilum JIP02/86 5298591 YP_001296236.1 CDS rpsG NC_009613.1 1525714 1526190 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(1525714..1526190) Flavobacterium psychrophilum JIP02/86 5298511 YP_001296237.1 CDS rpsL NC_009613.1 1526217 1526600 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(1526217..1526600) Flavobacterium psychrophilum JIP02/86 5300919 YP_001296238.1 CDS FP1344 NC_009613.1 1527078 1528727 D Similar to protein of unknown function of Cytophaga hutchinsonii; outer membrane protein precursor 1527078..1528727 Flavobacterium psychrophilum JIP02/86 5298593 YP_001296239.1 CDS FP1345 NC_009613.1 1528815 1532024 D Similar to outer membrane protein Omp121. TC 1.B.14.6.2; Omp121 family outer membrane protein 1528815..1532024 Flavobacterium psychrophilum JIP02/86 5298500 YP_001296240.1 CDS FP1346 NC_009613.1 1532039 1533517 D Similar to proteins of unknown function of Bacteroides thetaiotaomicron; hypothetical protein 1532039..1533517 Flavobacterium psychrophilum JIP02/86 5298501 YP_001296241.1 CDS FP1347 NC_009613.1 1533584 1534318 D Similar to rRNA methylases COG0566; tRNA/rRNA methyltransferase 1533584..1534318 Flavobacterium psychrophilum JIP02/86 5298502 YP_001296242.1 CDS FP1348 NC_009613.1 1534422 1535216 R Similar to uncharacterized membrane protein COG0705; hypothetical protein complement(1534422..1535216) Flavobacterium psychrophilum JIP02/86 5298503 YP_001296243.1 CDS FP1349 NC_009613.1 1535447 1536724 D Similar to ATPase related to the helicase subunit of the Holliday junction resolvase COG2256; recombination factor protein RarA 1535447..1536724 Flavobacterium psychrophilum JIP02/86 5298570 YP_001296244.1 CDS FP1350 NC_009613.1 1537034 1537801 R hypothetical protein complement(1537034..1537801) Flavobacterium psychrophilum JIP02/86 5298571 YP_001296245.1 CDS FP1351 NC_009613.1 1537803 1538489 R Similar to hydrolase, haloacid dehalogenase familyprotein; HAD superfamily hydrolase complement(1537803..1538489) Flavobacterium psychrophilum JIP02/86 5298572 YP_001296246.1 CDS radC NC_009613.1 1538584 1539279 R Involved in DNA repair; DNA repair protein RadC complement(1538584..1539279) Flavobacterium psychrophilum JIP02/86 5298573 YP_001296247.1 CDS FP1353 NC_009613.1 1539398 1540756 R Probably involved in peptidoglycan biosynthesis; Mur ligase family protein complement(1539398..1540756) Flavobacterium psychrophilum JIP02/86 5299473 YP_001296248.1 CDS FP1354 NC_009613.1 1540788 1541480 R Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(1540788..1541480) Flavobacterium psychrophilum JIP02/86 5298574 YP_001296249.1 CDS FP1355 NC_009613.1 1541562 1543712 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1541562..1543712) Flavobacterium psychrophilum JIP02/86 5298951 YP_001296250.1 CDS FP1356 NC_009613.1 1543902 1544363 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1543902..1544363 Flavobacterium psychrophilum JIP02/86 5298952 YP_001296251.1 CDS obgE NC_009613.1 1544462 1545469 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(1544462..1545469) Flavobacterium psychrophilum JIP02/86 5298953 YP_001296252.1 CDS FP1358 NC_009613.1 1545765 1547045 R Similar to hemolysins and related proteins containing CBS domains COG1253 and to putative Mg2+ and Co2+ transporter CorB COG4536; hypothetical protein complement(1545765..1547045) Flavobacterium psychrophilum JIP02/86 5300190 YP_001296253.1 CDS adk NC_009613.1 1547117 1547689 R Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitousenzyme involved in the energy metabolism and nucleotide synthesis, is essential for maintenance and cell growth (bysimilarity); adenylate kinase complement(1547117..1547689) Flavobacterium psychrophilum JIP02/86 5298954 YP_001296254.1 CDS hpt NC_009613.1 1547794 1548327 R Purine salvage; hypoxanthine phosphoribosyltransferase complement(1547794..1548327) Flavobacterium psychrophilum JIP02/86 5298737 YP_001296255.1 CDS FP1361 NC_009613.1 1548401 1548931 D hypothetical protein 1548401..1548931 Flavobacterium psychrophilum JIP02/86 5300133 YP_001296256.1 CDS purK NC_009613.1 1548986 1550143 D De novo purine biosynthesis; sixth step. Possessesan ATPase activity that is dependent on the presence of AIR (aminoimidazole ribonucleotide). The association of purK and purE produces an enzyme complex capable of converting AIR to CAIR efficiently under physiological condition (by similarity); phosphoribosylaminoimidazole carboxylase atpasesubunit 1548986..1550143 Flavobacterium psychrophilum JIP02/86 5300386 YP_001296257.1 CDS purE NC_009613.1 1550177 1550659 D De novo purine biosynthesis; sixth step. This subunit can alone transform AIR to CAIR, but in association with purK, which possesses an ATPase activity, an enzyme complex is produced which is capable of converting AIR to CAIR efficiently under physiological condition (by similarity); phosphoribosylaminoimidazole carboxylase catalytic subunit 1550177..1550659 Flavobacterium psychrophilum JIP02/86 5300023 YP_001296258.1 CDS dcp1 NC_009613.1 1550803 1552830 D Removes dipeptides from the C-termini of N- blockedtripeptides, tetrapeptides and larger peptides (by similarity); peptidyl-dipeptidase Dcp1 1550803..1552830 Flavobacterium psychrophilum JIP02/86 5298682 YP_001296259.1 CDS FP1365 NC_009613.1 1553078 1554418 D Similar to tryptophan repeat gene family proteins of Melanoplus sanguinipes entomopoxvirus; tryptophan repeat-containing protein 1553078..1554418 Flavobacterium psychrophilum JIP02/86 5300910 YP_001296260.1 CDS FP1366 NC_009613.1 1554432 1555070 D hypothetical protein 1554432..1555070 Flavobacterium psychrophilum JIP02/86 5300387 YP_001296261.1 CDS FP1367 NC_009613.1 1555081 1555659 D hypothetical protein 1555081..1555659 Flavobacterium psychrophilum JIP02/86 5300388 YP_001296262.1 CDS FP1368 NC_009613.1 1555661 1555969 D hypothetical protein 1555661..1555969 Flavobacterium psychrophilum JIP02/86 5300389 YP_001296263.1 CDS FP1371 NC_009613.1 1557209 1557979 R Probable transmembrane protein; hypothetical protein complement(1557209..1557979) Flavobacterium psychrophilum JIP02/86 5299480 YP_001296264.1 CDS gcvP NC_009613.1 1558213 1561056 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 1558213..1561056 Flavobacterium psychrophilum JIP02/86 5299481 YP_001296265.1 CDS FP1373 NC_009613.1 1561155 1561532 D Similar to protein of unknown function; hypothetical protein 1561155..1561532 Flavobacterium psychrophilum JIP02/86 5300558 YP_001296266.1 CDS fabH1 NC_009613.1 1561662 1562720 D Fatty acid biosynthesis; 3-oxoacyl-[acyl-carrier-protein] synthase III protein FabH1 1561662..1562720 Flavobacterium psychrophilum JIP02/86 5299482 YP_001296267.1 CDS FP1375 NC_009613.1 1562708 1564171 R Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis. Probable transmembrane protein; hypothetical protein complement(1562708..1564171) Flavobacterium psychrophilum JIP02/86 5298889 YP_001296268.1 CDS FP1376 NC_009613.1 1564244 1565122 R Similar to predicted glycosyltransferases COG1216; glycosyl transferase, group 2 family protein complement(1564244..1565122) Flavobacterium psychrophilum JIP02/86 5299483 YP_001296269.1 CDS FP1377 NC_009613.1 1565182 1566030 D glycosyl transferase, group 2 family protein 1565182..1566030 Flavobacterium psychrophilum JIP02/86 5298786 YP_001296270.1 CDS FP1378 NC_009613.1 1566343 1567089 D ABC transporter, permease (IM), MKL-family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease 1566343..1567089 Flavobacterium psychrophilum JIP02/86 5298787 YP_001296271.1 CDS FP1379 NC_009613.1 1567089 1567856 D ABC transporter, ATP-binding protein (ABC), MKL- family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase 1567089..1567856 Flavobacterium psychrophilum JIP02/86 5298788 YP_001296272.1 CDS FP1380 NC_009613.1 1568021 1568800 R Similar to protein of unknown function of Rhodopseudomonas palustris, Pseudomonas syringae and Shewanella oneidensis; hypothetical protein complement(1568021..1568800) Flavobacterium psychrophilum JIP02/86 5298789 YP_001296273.1 CDS manC NC_009613.1 1568854 1569915 R Involved in the biosynthesis of the capsular polysaccharide colanic acid. GDP-mannose biosynthesis (part of the gene cluster for the M antigen or colanic acid capsular polysaccharide) (by similarity); mannose-1-phosphate guanylyltransferase (GDP) complement(1568854..1569915) Flavobacterium psychrophilum JIP02/86 5298902 YP_001296274.1 CDS FP1382 NC_009613.1 1569924 1570523 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1569924..1570523) Flavobacterium psychrophilum JIP02/86 5299590 YP_001296275.1 CDS FP1383 NC_009613.1 1570789 1571466 R Similar to short-chain dehydrogenases; short-chain type dehydrogenase complement(1570789..1571466) Flavobacterium psychrophilum JIP02/86 5298903 YP_001296276.1 CDS pdhC NC_009613.1 1571547 1573175 R The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity); pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) complement(1571547..1573175) Flavobacterium psychrophilum JIP02/86 5298904 YP_001296277.1 CDS pdhA NC_009613.1 1573178 1574176 R The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity); pyruvate dehydrogenase E1 component, alpha subunit complement(1573178..1574176) Flavobacterium psychrophilum JIP02/86 5299093 YP_001296278.1 CDS cdd NC_009613.1 1574319 1574801 R his enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis (by similarity); cytidine deaminase complement(1574319..1574801) Flavobacterium psychrophilum JIP02/86 5299091 YP_001296279.1 CDS FP1387 NC_009613.1 1574874 1576067 R Similar to Fjo23 protein of Flavobacterium johnsoniae; hypothetical protein complement(1574874..1576067) Flavobacterium psychrophilum JIP02/86 5300366 YP_001296280.1 CDS FP1388 NC_009613.1 1576111 1579947 R Similar to Fjo24 protein of Flavobacterium johnsoniae; hypothetical protein complement(1576111..1579947) Flavobacterium psychrophilum JIP02/86 5298905 YP_001296281.1 CDS gldJ NC_009613.1 1580147 1581877 D Highly similar to Flavobacterium johnsoniae lipoprotein GldJ involved in gliding motility; gliding motility lipoprotein GldJ 1580147..1581877 Flavobacterium psychrophilum JIP02/86 5298906 YP_001296282.1 CDS murF NC_009613.1 1582314 1583597 R Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl- pentapeptide, the precursor of murein (By similarity); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(1582314..1583597) Flavobacterium psychrophilum JIP02/86 5298884 YP_001296283.1 CDS FP1391 NC_009613.1 1584023 1584358 D Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein 1584023..1584358 Flavobacterium psychrophilum JIP02/86 5298994 YP_001296284.1 CDS rpsT NC_009613.1 1591078 1591329 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1591078..1591329) Flavobacterium psychrophilum JIP02/86 5298744 YP_001296285.1 CDS proS NC_009613.1 1591761 1593239 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1591761..1593239) Flavobacterium psychrophilum JIP02/86 5298901 YP_001296286.1 CDS FP1401 NC_009613.1 1593342 1594355 D hypothetical protein 1593342..1594355 Flavobacterium psychrophilum JIP02/86 5299143 YP_001296287.1 CDS FP1402 NC_009613.1 1594426 1595958 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1594426..1595958 Flavobacterium psychrophilum JIP02/86 5298745 YP_001296288.1 CDS FP1403 NC_009613.1 1596311 1597612 D Similar to 2-methylthioadenine synthetase COG0621; hypothetical protein 1596311..1597612 Flavobacterium psychrophilum JIP02/86 5298746 YP_001296289.1 CDS FP1404 NC_009613.1 1597839 1598222 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1597839..1598222) Flavobacterium psychrophilum JIP02/86 5298747 YP_001296290.1 CDS FP1405 NC_009613.1 1599785 1600981 D Start doubtful, the first ATG was choosen. Probable transmembrane protein containing an histidine kinase domain in C-terminal; two-component system sensor histidine kinase 1599785..1600981 Flavobacterium psychrophilum JIP02/86 5299389 YP_001296291.1 CDS FP1406 NC_009613.1 1600982 1601665 D Similar to two-component system response regulatory protein; two-component system response regulatory protein 1600982..1601665 Flavobacterium psychrophilum JIP02/86 5299390 YP_001296292.1 CDS FP1407 NC_009613.1 1601691 1603868 R Some similarities with Fe-S oxidoreductase COG1032; hypothetical protein complement(1601691..1603868) Flavobacterium psychrophilum JIP02/86 5299391 YP_001296293.1 CDS FP1408 NC_009613.1 1603945 1605540 D Similar to uncharacterized protein conserved in bacteria COG4365; hypothetical protein 1603945..1605540 Flavobacterium psychrophilum JIP02/86 5299392 YP_001296294.1 CDS ndk NC_009613.1 1605658 1606077 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1605658..1606077 Flavobacterium psychrophilum JIP02/86 5299393 YP_001296295.1 CDS FP1410 NC_009613.1 1606165 1607226 R Similar to protein of unknown function of Geobacter metallireducens GS-15. Probable exported protein; hypothetical protein complement(1606165..1607226) Flavobacterium psychrophilum JIP02/86 5300195 YP_001296296.1 CDS FP1411 NC_009613.1 1607229 1608665 R Probable transmembrane protein similar to alginateo- acetyltransferase AlgI; sugar O-acetyltransferase precursor complement(1607229..1608665) Flavobacterium psychrophilum JIP02/86 5299384 YP_001296297.1 CDS FP1412 NC_009613.1 1609020 1610150 R Similar to alginate o-acetyltransferase AlgJ; sugar O-acetyltransferase precursor complement(1609020..1610150) Flavobacterium psychrophilum JIP02/86 5299385 YP_001296298.1 CDS FP1413 NC_009613.1 1610155 1611576 R Probable transmembrane protein similar to alginateo- acetyltransferase AlgI; sugar O-acetyltransferase precursor complement(1610155..1611576) Flavobacterium psychrophilum JIP02/86 5299386 YP_001296299.1 CDS FP1414 NC_009613.1 1611696 1611992 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1611696..1611992) Flavobacterium psychrophilum JIP02/86 5299387 YP_001296300.1 CDS FP1415 NC_009613.1 1611994 1612413 R hypothetical protein complement(1611994..1612413) Flavobacterium psychrophilum JIP02/86 5299388 YP_001296301.1 CDS FP1416 NC_009613.1 1612582 1613667 D Probably involved in peptidoglycan modification (by similarity); penicillin-binding protein 1612582..1613667 Flavobacterium psychrophilum JIP02/86 5300455 YP_001296302.1 CDS bsaA NC_009613.1 1613764 1614357 R Start doubtful, the first ATG was choosen. Glutathione peroxidase (GSHPx), an enzyme whose principal function is to protect against damage from endogenously- formed hydroxyperoxides, catalyses the reduction of hydroxyperoxides by glutathione; glutathione peroxidase BsaA complement(1613764..1614357) Flavobacterium psychrophilum JIP02/86 5300456 YP_001296303.1 CDS FP1418 NC_009613.1 1614368 1617493 R Probable transmembrane protein; cytochrome c-type biogenesis protein precursor complement(1614368..1617493) Flavobacterium psychrophilum JIP02/86 5299128 YP_001296304.1 CDS FP1419 NC_009613.1 1617648 1618409 D Similar to uncharacterized conserved protein COG5495; hypothetical protein 1617648..1618409 Flavobacterium psychrophilum JIP02/86 5300457 YP_001296305.1 CDS kdsC NC_009613.1 1618393 1618920 D Lipopolysaccharide biosynthesis; KDO biosynthesis;third step (by similarity); 3-deoxy-manno-octulosonate-8-phosphatase 1618393..1618920 Flavobacterium psychrophilum JIP02/86 5300458 YP_001296306.1 CDS ubiA NC_009613.1 1618967 1619890 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; prenyltransferase 1618967..1619890 Flavobacterium psychrophilum JIP02/86 5300843 YP_001296307.1 CDS maf NC_009613.1 1619880 1620467 D Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 1619880..1620467 Flavobacterium psychrophilum JIP02/86 5298969 YP_001296308.1 CDS truA NC_009613.1 1620742 1621494 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1620742..1621494 Flavobacterium psychrophilum JIP02/86 5299588 YP_001296309.1 CDS FP1424 NC_009613.1 1621481 1623238 D ABC transporter, permease and ATP-binding protein (IM-ABC), DPL-family, export of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease/ATPase 1621481..1623238 Flavobacterium psychrophilum JIP02/86 5299822 YP_001296310.1 CDS folP NC_009613.1 1623241 1624083 R Dihydrofolate biosynthesis; second step; dihydropteroate synthase complement(1623241..1624083) Flavobacterium psychrophilum JIP02/86 5298970 YP_001296311.1 CDS FP1426 NC_009613.1 1624196 1624744 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1624196..1624744 Flavobacterium psychrophilum JIP02/86 5299952 YP_001296312.1 CDS tlpB NC_009613.1 1624969 1626072 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; putative thiol:disulfide oxidoreductase TlpB 1624969..1626072 Flavobacterium psychrophilum JIP02/86 5298971 YP_001296313.1 CDS tlpA NC_009613.1 1626079 1626576 D Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; putative thiol:disulfide oxidoreductase TlpA 1626079..1626576 Flavobacterium psychrophilum JIP02/86 5299335 YP_001296314.1 CDS tpiA NC_009613.1 1626576 1627328 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1626576..1627328 Flavobacterium psychrophilum JIP02/86 5298678 YP_001296315.1 CDS ftsY NC_009613.1 1627555 1628508 R Functional homolog of SRP receptor. Probably involved in the reception and insertion of a subset of proteinsat the cytoplasmic membrane (By similarity); cell division protein FtsY complement(1627555..1628508) Flavobacterium psychrophilum JIP02/86 5299338 YP_001296316.1 CDS FP1431 NC_009613.1 1628796 1628948 R hypothetical protein complement(1628796..1628948) Flavobacterium psychrophilum JIP02/86 5300235 YP_001296317.1 CDS rpmG NC_009613.1 1628958 1629140 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1628958..1629140) Flavobacterium psychrophilum JIP02/86 5298972 YP_001296318.1 CDS rpmB NC_009613.1 1629167 1629403 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1629167..1629403) Flavobacterium psychrophilum JIP02/86 5299371 YP_001296319.1 CDS cinA NC_009613.1 1629472 1630728 R Similar to competence-damage inducible protein CinA; CinA-like protein complement(1629472..1630728) Flavobacterium psychrophilum JIP02/86 5300587 YP_001296320.1 CDS FP1435 NC_009613.1 1630838 1631908 R Similar to exopolyphosphatase COG0248; exopolyphosphatase complement(1630838..1631908) Flavobacterium psychrophilum JIP02/86 5299509 YP_001296321.1 CDS FP1436 NC_009613.1 1632098 1632337 R hypothetical protein complement(1632098..1632337) Flavobacterium psychrophilum JIP02/86 5298973 YP_001296322.1 CDS FP1437 NC_009613.1 1632343 1632954 R Some similarities with 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) COG0179; fumarylacetoacetate hydrolase family protein complement(1632343..1632954) Flavobacterium psychrophilum JIP02/86 5299765 YP_001296323.1 CDS FP1438 NC_009613.1 1633001 1633771 R Similar to DNA polymerase III, epsilon subunit andrelated 3'-5' exonucleases COG0847 and C-terminal region similar to nuclease subunit of the excinuclease complex COG0322; DNA polymerase III subunit complement(1633001..1633771) Flavobacterium psychrophilum JIP02/86 5299766 YP_001296324.1 CDS FP1439 NC_009613.1 1633887 1634882 R Some similarities with peptidyl-prolyl cis-trans isomerase, FKBP-type COG0545; hypothetical protein complement(1633887..1634882) Flavobacterium psychrophilum JIP02/86 5299767 YP_001296325.1 CDS FP1440 NC_009613.1 1634959 1635354 D Similar to ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog); ribosome-associated heat shock protein Hsp15 1634959..1635354 Flavobacterium psychrophilum JIP02/86 5299768 YP_001296326.1 CDS FP1441 NC_009613.1 1635341 1635925 D S-methyltransferase family protein; hypothetical protein 1635341..1635925 Flavobacterium psychrophilum JIP02/86 5299647 YP_001296327.1 CDS pyrR2 NC_009613.1 1635931 1636428 D Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine- dependent manner to specific sites on pyr mRNA. Displays also a weak uracil phosphoribosyltransferase activity which is not physiologically significant (by similarity); bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase 1635931..1636428 Flavobacterium psychrophilum JIP02/86 5299648 YP_001296328.1 CDS aroK NC_009613.1 1636420 1636938 R Aromatic amino acids biosynthesis. Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and PEP: step 5; shikimate kinase complement(1636420..1636938) Flavobacterium psychrophilum JIP02/86 5299470 YP_001296329.1 CDS crtY NC_009613.1 1637677 1638819 R Carotenoid biosynthesis. Catalyzes the cyclizationreaction which converts lycopene to beta- carotene (By similarity); lycopene cyclase complement(1637677..1638819) Flavobacterium psychrophilum JIP02/86 5300056 YP_001296330.1 CDS FP1448 NC_009613.1 1638898 1639797 D MerR family transcriptional regulator 1638898..1639797 Flavobacterium psychrophilum JIP02/86 5298844 YP_001296331.1 CDS crtI NC_009613.1 1639846 1641309 D Carotenoid biosynthesis. This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of fourdouble bonds (By similarity); phytoene dehydrogenase 1639846..1641309 Flavobacterium psychrophilum JIP02/86 5299649 YP_001296332.1 CDS crtB NC_009613.1 1641311 1642150 D Carotenoid biosynthesis. Catalyzes the reaction from prephytoene diphosphate to phytoene (By similarity); geranylgeranyl- diphosphategeranylgeranyltransfera se 1641311..1642150 Flavobacterium psychrophilum JIP02/86 5298843 YP_001296333.1 CDS crtZ NC_009613.1 1642156 1642596 D carotene hydroxylase 1642156..1642596 Flavobacterium psychrophilum JIP02/86 5298842 YP_001296334.1 CDS FP1452 NC_009613.1 1642973 1643509 R hypothetical protein complement(1642973..1643509) Flavobacterium psychrophilum JIP02/86 5300934 YP_001296335.1 CDS FP1453 NC_009613.1 1643512 1644039 R hypothetical protein complement(1643512..1644039) Flavobacterium psychrophilum JIP02/86 5299650 YP_001296336.1 CDS FP1454 NC_009613.1 1644148 1644597 R Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein. Putative anti ECF- type sigma factor; hypothetical protein complement(1644148..1644597) Flavobacterium psychrophilum JIP02/86 5299651 YP_001296337.1 CDS FP1455 NC_009613.1 1644584 1645093 R Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor complement(1644584..1645093) Flavobacterium psychrophilum JIP02/86 5299150 YP_001296338.1 CDS FP1456 NC_009613.1 1645233 1646294 R Similar to protein of unknown function of the CFB phylum; lipoprotein precursor complement(1645233..1646294) Flavobacterium psychrophilum JIP02/86 5299151 YP_001296339.1 CDS FP1457 NC_009613.1 1646300 1648162 R Outer Membrane Receptor (OMR) Family protein. TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(1646300..1648162) Flavobacterium psychrophilum JIP02/86 5299152 YP_001296340.1 CDS gpmA NC_009613.1 1648551 1649075 R Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate (by similarity); phosphoglycerate mutase complement(1648551..1649075) Flavobacterium psychrophilum JIP02/86 5299153 YP_001296341.1 CDS cobS NC_009613.1 1649060 1649836 R Cobalamin biosynthesis; last step; adenosylcobinamide-GDP ribazoletransferase complement(1649060..1649836) Flavobacterium psychrophilum JIP02/86 5298795 YP_001296342.1 CDS bluB/cobT NC_009613.1 1649871 1651547 R N-terminal region similar to cobalamin biosynthesis nitroreductase BluB and C-terminal region similar to CobT involved in cobalamin biosynthesis; bifunctional cob(II)yrinic acid a,c-diamide reductase/nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase complement(1649871..1651547) Flavobacterium psychrophilum JIP02/86 5298774 YP_001296343.1 CDS cobU NC_009613.1 1651732 1652244 R Adenosylcobalamin biosynthesis; last part; sixth step (by similarity); bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase CobU complement(1651732..1652244) Flavobacterium psychrophilum JIP02/86 5299125 YP_001296344.1 CDS FP1462 NC_009613.1 1652241 1652645 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1652241..1652645) Flavobacterium psychrophilum JIP02/86 5298775 YP_001296345.1 CDS FP1463 NC_009613.1 1652811 1653953 D ABC transporter, binding protein (BP), ISVH-family, iron(III) import (putative), TC 3.A.1.14. Z; iron ABC transporter 1652811..1653953 Flavobacterium psychrophilum JIP02/86 5299154 YP_001296346.1 CDS FP1464 NC_009613.1 1653955 1654983 D ABC transporter, permease (IM), ISVH-family, iron(III) import (putative), TC 3.A.1.14. Z; iron ABC transporter permease 1653955..1654983 Flavobacterium psychrophilum JIP02/86 5299944 YP_001296347.1 CDS FP1465 NC_009613.1 1655099 1656211 D Similar to glycosyltransferases , probably involved in cell wall biogenesis COG1215; glycosyl transferase, group 2 family protein 1655099..1656211 Flavobacterium psychrophilum JIP02/86 5299945 YP_001296348.1 CDS FP1466 NC_009613.1 1656202 1656750 D Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor 1656202..1656750 Flavobacterium psychrophilum JIP02/86 5299946 YP_001296349.1 CDS FP1467 NC_009613.1 1656919 1657740 D Probable transmembrane protein; hypothetical protein 1656919..1657740 Flavobacterium psychrophilum JIP02/86 5299947 YP_001296350.1 CDS FP1468 NC_009613.1 1657794 1658030 D Probable transmembrane protein; hypothetical protein 1657794..1658030 Flavobacterium psychrophilum JIP02/86 5299374 YP_001296351.1 CDS lipA NC_009613.1 1658106 1658978 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1658106..1658978 Flavobacterium psychrophilum JIP02/86 5299375 YP_001296352.1 CDS gapA1 NC_009613.1 1659031 1660029 D Second phase of glycolysis; first step; glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 1659031..1660029 Flavobacterium psychrophilum JIP02/86 5299293 YP_001296353.1 CDS FP1471 NC_009613.1 1660063 1662252 D Hybrid sensory kinase containing a response regulator receiver domain in the C-terminal part; two-component system sensor histidine kinase 1660063..1662252 Flavobacterium psychrophilum JIP02/86 5300330 YP_001296354.1 CDS deoD NC_009613.1 1662239 1663051 R catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase complement(1662239..1663051) Flavobacterium psychrophilum JIP02/86 5299376 YP_001296355.1 CDS lpxK NC_009613.1 1663023 1664054 R Lipid A biosynthesis; sixth step; tetraacyldisaccharide 4'-kinase complement(1663023..1664054) Flavobacterium psychrophilum JIP02/86 5299107 YP_001296356.1 CDS FP1474 NC_009613.1 1664171 1664665 R Weakly similar to acetyltransferases COG0456; GNAT family acetyltransferase complement(1664171..1664665) Flavobacterium psychrophilum JIP02/86 5299364 YP_001296357.1 CDS folD NC_009613.1 1664817 1665701 R Necessary for the biosynthesis of purines, thymidylate, methionine, histidine, pantothenate, and formyl tRNA-Met; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase FolD complement(1664817..1665701) Flavobacterium psychrophilum JIP02/86 5299377 YP_001296358.1 CDS ffh NC_009613.1 1665781 1667130 R Necessary for efficient export of extra-cytoplasmic proteins. Binds to the signal sequence when it emerges from the ribosomes; Signal recognition particle protein complement(1665781..1667130) Flavobacterium psychrophilum JIP02/86 5299949 YP_001296359.1 CDS FP1477 NC_009613.1 1667249 1668658 R Similar to predicted thiol oxidoreductase COG3488; hypothetical protein complement(1667249..1668658) Flavobacterium psychrophilum JIP02/86 5299199 YP_001296360.1 CDS FP1478 NC_009613.1 1669123 1670295 R Similar to uncharacterized iron-regulated protein COG3487; lipoprotein precursor complement(1669123..1670295) Flavobacterium psychrophilum JIP02/86 5299378 YP_001296361.1 CDS FP1479 NC_009613.1 1670404 1671195 R hypothetical protein complement(1670404..1671195) Flavobacterium psychrophilum JIP02/86 5298684 YP_001296362.1 CDS FP1480 NC_009613.1 1671202 1671726 R Some similarities with ankyrin repeat COG0666. Some similarities with eukaryotic proteins; ankyrin repeat-containing protein complement(1671202..1671726) Flavobacterium psychrophilum JIP02/86 5298685 YP_001296363.1 CDS FP1481 NC_009613.1 1671738 1672742 R Similar to uncharacterized protein related to plant photosystem II stability/assembly factor COG4447; hypothetical protein complement(1671738..1672742) Flavobacterium psychrophilum JIP02/86 5298686 YP_001296364.1 CDS FP1482 NC_009613.1 1672778 1673782 R Similar to uncharacterized protein related to plant photosystem II stability/assembly factor COG4447; hypothetical protein complement(1672778..1673782) Flavobacterium psychrophilum JIP02/86 5298687 YP_001296365.1 CDS FP1483 NC_009613.1 1673811 1675163 R Probable exported protein; hypothetical protein complement(1673811..1675163) Flavobacterium psychrophilum JIP02/86 5298688 YP_001296366.1 CDS apbE NC_009613.1 1675406 1676368 R Similar to membrane-associated lipoprotein involved in thiamine biosynthesis COG1477; thiamine biosynthesis lipoprotein complement(1675406..1676368) Flavobacterium psychrophilum JIP02/86 5298608 YP_001296367.1 CDS FP1485 NC_009613.1 1676377 1676814 R Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein complement(1676377..1676814) Flavobacterium psychrophilum JIP02/86 5300806 YP_001296368.1 CDS FP1486 NC_009613.1 1676970 1678208 D Similar to protein of unknown function of Bacteroides fragilis and Cytophaga hutchinsonii; hypothetical protein 1676970..1678208 Flavobacterium psychrophilum JIP02/86 5298609 YP_001296369.1 CDS irpA NC_009613.1 1678262 1679377 D Probable lipoprotein. IrpA occurs under iron- deficient growth conditions in cyanobacterium Synechococcus anddisappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage; Iron-regulated protein A precursor 1678262..1679377 Flavobacterium psychrophilum JIP02/86 5298610 YP_001296370.1 CDS FP1488 NC_009613.1 1679380 1680747 D Vitamin K-dependent carboxylation of multiple amino- terminal glutamate residues in various proteins, it converts glutamate residues to gamma-carboxyglutamate (by similarity); vitamin K-dependent gamma-carboxylase 1679380..1680747 Flavobacterium psychrophilum JIP02/86 5298928 YP_001296371.1 CDS fecA NC_009613.1 1680728 1683163 D ABC transporter, outer membrane receptor (OMR), ISVH-family, Iron(III) dicitrate import, TC 1.B.14.1.2; ABC-type iron(III) dicitrate-transport system component, TonB-dependent outer membrane receptor FecA precursor 1680728..1683163 Flavobacterium psychrophilum JIP02/86 5298611 YP_001296372.1 CDS FP1490 NC_009613.1 1683160 1683546 R Similar to acyl-CoA hydrolase COG1607; Acyl-CoA hydrolase family protein complement(1683160..1683546) Flavobacterium psychrophilum JIP02/86 5299468 YP_001296373.1 CDS FP1491 NC_009613.1 1683551 1684039 R Some similarities with histidine kinase sensor proteins; hypothetical protein complement(1683551..1684039) Flavobacterium psychrophilum JIP02/86 5300027 YP_001296374.1 CDS FP1492 NC_009613.1 1684372 1684590 R Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(1684372..1684590) Flavobacterium psychrophilum JIP02/86 5300028 YP_001296375.1 CDS FP1493 NC_009613.1 1684704 1685348 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1684704..1685348) Flavobacterium psychrophilum JIP02/86 5300029 YP_001296376.1 CDS FP1494 NC_009613.1 1685373 1685849 R Probable transmembrane protein; hypothetical protein complement(1685373..1685849) Flavobacterium psychrophilum JIP02/86 5300030 YP_001296377.1 CDS FP1495 NC_009613.1 1685870 1687942 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(1685870..1687942) Flavobacterium psychrophilum JIP02/86 5300031 YP_001296378.1 CDS FP1496 NC_009613.1 1688040 1688954 D Similar to protein of unknown function of Xanthomonas sp.; hypothetical protein 1688040..1688954 Flavobacterium psychrophilum JIP02/86 5300801 YP_001296379.1 CDS FP1497 NC_009613.1 1688960 1689298 D hypothetical protein 1688960..1689298 Flavobacterium psychrophilum JIP02/86 5300802 YP_001296380.1 CDS argS NC_009613.1 1689420 1691225 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(1689420..1691225) Flavobacterium psychrophilum JIP02/86 5300803 YP_001296381.1 CDS FP1499 NC_009613.1 1691443 1695801 D Some weak similarities with hemagglutinin-related protein. Putative exported protein; hypothetical protein 1691443..1695801 Flavobacterium psychrophilum JIP02/86 5300809 YP_001296382.1 CDS FP1500 NC_009613.1 1695944 1698406 D Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor 1695944..1698406 Flavobacterium psychrophilum JIP02/86 5300804 YP_001296383.1 CDS fabH2 NC_009613.1 1700084 1701091 R Fatty acid biosynthesis; 3-oxoacyl-[acyl-carrier-protein] synthase III protein FabH2 complement(1700084..1701091) Flavobacterium psychrophilum JIP02/86 5300805 YP_001296384.1 CDS FP1502 NC_009613.1 1701194 1701967 D Some similarities with protein of unknown functionof Methanosarcina acetivorans. Probable transmembrane protein; hypothetical protein 1701194..1701967 Flavobacterium psychrophilum JIP02/86 5298890 YP_001296385.1 CDS FP1503 NC_009613.1 1701964 1702341 R hypothetical protein complement(1701964..1702341) Flavobacterium psychrophilum JIP02/86 5299856 YP_001296386.1 CDS FP1504 NC_009613.1 1702343 1703287 R ABC transporter, ATP-binding protein (ABC), MOI- family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase complement(1702343..1703287) Flavobacterium psychrophilum JIP02/86 5299857 YP_001296387.1 CDS FP1505 NC_009613.1 1703382 1704689 R Similar to predicted unusual protein kinase COG0661; hypothetical protein complement(1703382..1704689) Flavobacterium psychrophilum JIP02/86 5299858 YP_001296388.1 CDS FP1506 NC_009613.1 1704692 1705363 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1704692..1705363) Flavobacterium psychrophilum JIP02/86 5299859 YP_001296389.1 CDS yiaD NC_009613.1 1705512 1706207 R Similar to outer membrane protein and related peptidoglycan-associated (lipo)proteins COG2885; lipoprotein YiaD precursor complement(1705512..1706207) Flavobacterium psychrophilum JIP02/86 5299625 YP_001296390.1 CDS FP1508 NC_009613.1 1706219 1706695 R hypothetical protein complement(1706219..1706695) Flavobacterium psychrophilum JIP02/86 5299030 YP_001296391.1 CDS htpG NC_009613.1 1706867 1708765 D molecular chaperone; heat shock protein 90 1706867..1708765 Flavobacterium psychrophilum JIP02/86 5299626 YP_001296392.1 CDS FP1510 NC_009613.1 1708816 1710918 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(1708816..1710918) Flavobacterium psychrophilum JIP02/86 5299007 YP_001296393.1 CDS FP1511 NC_009613.1 1711453 1712841 D Similar to uncharacterized protein conserved in bacteria COG5267; hypothetical protein 1711453..1712841 Flavobacterium psychrophilum JIP02/86 5299627 YP_001296394.1 CDS FP1512 NC_009613.1 1712995 1714161 D Similar to uncharacterized protein conserved in bacteria COG4102. Probable secreted protein containing a twin-arginine translocation pathway signal sequence domain; hypothetical protein 1712995..1714161 Flavobacterium psychrophilum JIP02/86 5299628 YP_001296395.1 CDS FP1513 NC_009613.1 1714228 1715124 D Similar to Fjo20 protein of Flavobacterium johnsoniae. Probable drug/metabolite transporter (DMT) superfamily protein. TC 2.A.7.Y.Z; drug/metabolite-transporting permease 1714228..1715124 Flavobacterium psychrophilum JIP02/86 5299629 YP_001296396.1 CDS FP1514 NC_009613.1 1715550 1716092 R hypothetical protein complement(1715550..1716092) Flavobacterium psychrophilum JIP02/86 5299643 YP_001296397.1 CDS FP1515 NC_009613.1 1716110 1716361 R Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(1716110..1716361) Flavobacterium psychrophilum JIP02/86 5299644 YP_001296398.1 CDS FP1516 NC_009613.1 1716489 1719443 R Some similarities with two-component sensor histidine kinase LytS; two-component system sensor histidine kinase complement(1716489..1719443) Flavobacterium psychrophilum JIP02/86 5299645 YP_001296399.1 CDS FP1517 NC_009613.1 1719454 1720206 R Similar to response regulator of the LytR/AlgR family COG3279; two-component system response regulatory protein complement(1719454..1720206) Flavobacterium psychrophilum JIP02/86 5299646 YP_001296400.1 CDS FP1523 NC_009613.1 1726968 1727657 D Similar to two-component system response regulatory protein RprY; two-component system response regulatory protein 1726968..1727657 Flavobacterium psychrophilum JIP02/86 5300956 YP_001296401.1 CDS FP1524 NC_009613.1 1728319 1732383 D Similar to uncharacterized conserved protein COG3513, TIGR01865. HNH endonuclease ?; CRISPR-associated endonuclease Csn1 family protein 1728319..1732383 Flavobacterium psychrophilum JIP02/86 5300926 YP_001296402.1 CDS FP1525 NC_009613.1 1732692 1733588 D Similar to uncharacterized conserved protein predicted to be a putative novel nuclease COG1518, TIGR00287.; CRISPR-associated Cas1 family protein 1732692..1733588 Flavobacterium psychrophilum JIP02/86 5300927 YP_001296403.1 CDS FP1526 NC_009613.1 1733581 1733928 D Similar to uncharacterized conserved protein COG3512; CRISPR-associated Cas2 family protein 1733581..1733928 Flavobacterium psychrophilum JIP02/86 5300928 YP_001296404.1 CDS FP1527 NC_009613.1 1737807 1738646 R hypothetical protein complement(1737807..1738646) Flavobacterium psychrophilum JIP02/86 5300929 YP_001296405.1 CDS FP1528 NC_009613.1 1738650 1741889 R hypothetical protein complement(1738650..1741889) Flavobacterium psychrophilum JIP02/86 5299709 YP_001296406.1 CDS FP1529 NC_009613.1 1741886 1742533 R hypothetical protein complement(1741886..1742533) Flavobacterium psychrophilum JIP02/86 5299710 YP_001296407.1 CDS FP1530 NC_009613.1 1742503 1743843 R hypothetical protein complement(1742503..1743843) Flavobacterium psychrophilum JIP02/86 5299711 YP_001296408.1 CDS FP1531 NC_009613.1 1743862 1745856 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(1743862..1745856) Flavobacterium psychrophilum JIP02/86 5299712 YP_001296409.1 CDS FP1532 NC_009613.1 1745858 1747018 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(1745858..1747018) Flavobacterium psychrophilum JIP02/86 5299704 YP_001296410.1 CDS FP1533 NC_009613.1 1747020 1749206 R Some similarities with protein of unknown functionof Bacteroides fragilis; hypothetical protein complement(1747020..1749206) Flavobacterium psychrophilum JIP02/86 5299705 YP_001296411.1 CDS FP1534 NC_009613.1 1749219 1750076 R Similar to uncharacterized conserved protein COG2253; hypothetical protein complement(1749219..1750076) Flavobacterium psychrophilum JIP02/86 5299706 YP_001296412.1 CDS FP1535 NC_009613.1 1750076 1750876 R Similar to predicted transcriptional regulator COG5340; hypothetical protein complement(1750076..1750876) Flavobacterium psychrophilum JIP02/86 5299707 YP_001296413.1 CDS FP1536 NC_009613.1 1751060 1754329 R hypothetical protein complement(1751060..1754329) Flavobacterium psychrophilum JIP02/86 5299708 YP_001296414.1 CDS FP1537 NC_009613.1 1755102 1755728 R Similar to predicted ATPase of Cytophaga hutchinsonii; hypothetical protein complement(1755102..1755728) Flavobacterium psychrophilum JIP02/86 5300312 YP_001296415.1 CDS FP1538 NC_009613.1 1755814 1756674 R Some similarities with protein of unknown functionof Cytophaga hutchinsonii; hypothetical protein complement(1755814..1756674) Flavobacterium psychrophilum JIP02/86 5300313 YP_001296416.1 CDS FP1539 NC_009613.1 1756682 1756969 R Similar to protein of unknown function of Bacteroides spp.; hypothetical protein complement(1756682..1756969) Flavobacterium psychrophilum JIP02/86 5300314 YP_001296417.1 CDS FP1540 NC_009613.1 1757081 1757929 R Similar to tetracycline resistance element mobilization regulatory protein RteC of the CFB phylum; hypothetical protein complement(1757081..1757929) Flavobacterium psychrophilum JIP02/86 5300315 YP_001296418.1 CDS FP1541 NC_009613.1 1758391 1759614 R Major Facilitator Superfamily (MFS). TC 2.A.1.Y.Z.; major facilitator superfamily permease complement(1758391..1759614) Flavobacterium psychrophilum JIP02/86 5300173 YP_001296419.1 CDS FP1542 NC_009613.1 1759632 1759799 R hypothetical protein complement(1759632..1759799) Flavobacterium psychrophilum JIP02/86 5300174 YP_001296420.1 CDS tetX NC_009613.1 1759811 1760968 R Resistance to tetracycline via an oxidoreductase activity (By similarity); tetracycline resistance protein complement(1759811..1760968) Flavobacterium psychrophilum JIP02/86 5300175 YP_001296421.1 CDS FP1544 NC_009613.1 1761066 1762031 D Similar to AraC-type DNA-binding domain- containingproteins COG2207; AraC family transcriptional regulator 1761066..1762031 Flavobacterium psychrophilum JIP02/86 5299696 YP_001296422.1 CDS FP1545 NC_009613.1 1762038 1762877 R hypothetical protein complement(1762038..1762877) Flavobacterium psychrophilum JIP02/86 5300176 YP_001296423.1 CDS FP1546 NC_009613.1 1764660 1764863 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1764660..1764863) Flavobacterium psychrophilum JIP02/86 5300177 YP_001296424.1 CDS FP1547 NC_009613.1 1765146 1765901 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 1765146..1765901 Flavobacterium psychrophilum JIP02/86 5300944 YP_001296425.1 CDS FP1548 NC_009613.1 1765903 1766298 D Highly similar to protein of unknown function of Flavobacterium psychrophilum and some similarities with proteins of unknown function of Desulfotalea psychrophila andPhotobacterium profundum; hypothetical protein 1765903..1766298 Flavobacterium psychrophilum JIP02/86 5300945 YP_001296426.1 CDS FP1549 NC_009613.1 1766309 1766533 D Probable transmembrane protein; hypothetical protein 1766309..1766533 Flavobacterium psychrophilum JIP02/86 5300946 YP_001296427.1 CDS FP1550 NC_009613.1 1766544 1766696 D hypothetical protein 1766544..1766696 Flavobacterium psychrophilum JIP02/86 5300947 YP_001296428.1 CDS FP1551 NC_009613.1 1766778 1766957 R Similar to hypothetical protein of Flavobacterium psychrophilum; hypothetical protein complement(1766778..1766957) Flavobacterium psychrophilum JIP02/86 5300905 YP_001296429.1 CDS FP1552 NC_009613.1 1766980 1767402 R Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(1766980..1767402) Flavobacterium psychrophilum JIP02/86 5300906 YP_001296430.1 CDS FP1553 NC_009613.1 1768856 1770244 R Similar to predicted transcriptional regulator containing an HTH domain and an uncharacterized domain sharedwith the mammalian protein Schlafen COG2865; hypothetical protein complement(1768856..1770244) Flavobacterium psychrophilum JIP02/86 5300907 YP_001296431.1 CDS FP1554 NC_009613.1 1770278 1772293 R Similar to putative DNA mismatch repair protein; hypothetical protein complement(1770278..1772293) Flavobacterium psychrophilum JIP02/86 5300908 YP_001296432.1 CDS FP1555 NC_009613.1 1772441 1772557 R hypothetical protein complement(1772441..1772557) Flavobacterium psychrophilum JIP02/86 5300909 YP_001296433.1 CDS FP1556 NC_009613.1 1772557 1773492 R Some similarities with protein of unknown functionof Bacteroides fragilis; hypothetical protein complement(1772557..1773492) Flavobacterium psychrophilum JIP02/86 5299958 YP_001296434.1 CDS FP1557 NC_009613.1 1773489 1775408 R Weakly similar to predicted ATP-binding protein involved in virulence of Vibrio vulnificus; hypothetical protein complement(1773489..1775408) Flavobacterium psychrophilum JIP02/86 5299959 YP_001296435.1 CDS FP1558 NC_009613.1 1775405 1776121 R hypothetical protein complement(1775405..1776121) Flavobacterium psychrophilum JIP02/86 5299960 YP_001296436.1 CDS FP1559 NC_009613.1 1776125 1777837 R Some similarities with protein of unknown functionof Dechloromonas aromatica RCB; hypothetical protein complement(1776125..1777837) Flavobacterium psychrophilum JIP02/86 5299961 YP_001296437.1 CDS FP1560 NC_009613.1 1777851 1779002 R Similar to protein of unknown function of Pirellula sp. and Burkholderia fungorum; hypothetical protein complement(1777851..1779002) Flavobacterium psychrophilum JIP02/86 5300017 YP_001296438.1 CDS FP1561 NC_009613.1 1779043 1780944 R Similar to superfamily I DNA and RNA helicases COG0210; hypothetical protein complement(1779043..1780944) Flavobacterium psychrophilum JIP02/86 5300018 YP_001296439.1 CDS FP1562 NC_009613.1 1780926 1783022 R Some similarities with pathogenesis-related protein RL009 of Pseudomonas aeruginosa strain PA14 pathogenicity island PAPI-1; hypothetical protein complement(1780926..1783022) Flavobacterium psychrophilum JIP02/86 5300019 YP_001296440.1 CDS FP1563 NC_009613.1 1783029 1783994 R hypothetical protein complement(1783029..1783994) Flavobacterium psychrophilum JIP02/86 5300020 YP_001296441.1 CDS FP1564 NC_009613.1 1784017 1785453 R Weakly similar to protein of unknown function of Bacteroides thetaiotaomicron; hypothetical protein complement(1784017..1785453) Flavobacterium psychrophilum JIP02/86 5300021 YP_001296442.1 CDS FP1565 NC_009613.1 1785472 1785867 R hypothetical protein complement(1785472..1785867) Flavobacterium psychrophilum JIP02/86 5299797 YP_001296443.1 CDS FP1566 NC_009613.1 1785917 1787521 R Similar to adenine-specific DNA methylase COG0827; modification methyltransferase complement(1785917..1787521) Flavobacterium psychrophilum JIP02/86 5299798 YP_001296444.1 CDS FP1567 NC_009613.1 1787508 1790495 R endonuclease-methyltransferase fusion protein complement(1787508..1790495) Flavobacterium psychrophilum JIP02/86 5299799 YP_001296445.1 CDS FP1568 NC_009613.1 1790501 1790794 R Some similarities with putative transcription regulators; putative DNA binding protein complement(1790501..1790794) Flavobacterium psychrophilum JIP02/86 5299800 YP_001296446.1 CDS FP1569 NC_009613.1 1790879 1791523 R hypothetical protein complement(1790879..1791523) Flavobacterium psychrophilum JIP02/86 5299801 YP_001296447.1 CDS FP1570 NC_009613.1 1791569 1792192 R Similar to predicted ATPase of Cytophaga hutchinsonii; hypothetical protein complement(1791569..1792192) Flavobacterium psychrophilum JIP02/86 5298729 YP_001296448.1 CDS FP1571 NC_009613.1 1792278 1793081 R Some similarities with protein of unknown functionof Cytophaga hutchinsonii; hypothetical protein complement(1792278..1793081) Flavobacterium psychrophilum JIP02/86 5298730 YP_001296449.1 CDS FP1572 NC_009613.1 1793200 1793487 R Similar to protein of unknown function of Bacteroides sp.; hypothetical protein complement(1793200..1793487) Flavobacterium psychrophilum JIP02/86 5298731 YP_001296450.1 CDS FP1573 NC_009613.1 1793829 1794083 D hypothetical protein 1793829..1794083 Flavobacterium psychrophilum JIP02/86 5298732 YP_001296451.1 CDS FP1574 NC_009613.1 1794060 1795559 R hypothetical protein complement(1794060..1795559) Flavobacterium psychrophilum JIP02/86 5298733 YP_001296452.1 CDS FP1575 NC_009613.1 1795608 1795904 R hypothetical protein complement(1795608..1795904) Flavobacterium psychrophilum JIP02/86 5300659 YP_001296453.1 CDS FP1576 NC_009613.1 1795943 1796110 R hypothetical protein complement(1795943..1796110) Flavobacterium psychrophilum JIP02/86 5300660 YP_001296454.1 CDS FP1577 NC_009613.1 1796143 1796613 R Similar to uncharacterized protein PaaI, possibly involved in aromatic compounds catabolism COG2050; hypothetical protein complement(1796143..1796613) Flavobacterium psychrophilum JIP02/86 5300661 YP_001296455.1 CDS FP1578 NC_009613.1 1796728 1797462 R Similar to protein of unknown function of Acinetobacter sp.; hypothetical protein complement(1796728..1797462) Flavobacterium psychrophilum JIP02/86 5300662 YP_001296456.1 CDS FP1579 NC_009613.1 1797498 1797998 R Similar to predicted thioesterase COG0824; putative thioesterase complement(1797498..1797998) Flavobacterium psychrophilum JIP02/86 5300663 YP_001296457.1 CDS panB NC_009613.1 1798061 1798879 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1798061..1798879) Flavobacterium psychrophilum JIP02/86 5300895 YP_001296458.1 CDS FP1581 NC_009613.1 1798883 1799773 R Similar to putative periplasmic ATP/GTP-binding protein of Campylobacter spp.; putative ATP/GTP-binding protein complement(1798883..1799773) Flavobacterium psychrophilum JIP02/86 5299258 YP_001296459.1 CDS panE NC_009613.1 1799789 1800745 R Cofactor biosynthesis; pantothenate biosynthesis; pantoate from 3-methyl-2-oxobutanoate: step 2. Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (by similarity); 2-dehydropantoate 2-reductase complement(1799789..1800745) Flavobacterium psychrophilum JIP02/86 5300896 YP_001296460.1 CDS FP1583 NC_009613.1 1800771 1801301 R putative acetyltransferase complement(1800771..1801301) Flavobacterium psychrophilum JIP02/86 5299261 YP_001296461.1 CDS FP1584 NC_009613.1 1801303 1801815 R hypothetical protein complement(1801303..1801815) Flavobacterium psychrophilum JIP02/86 5300897 YP_001296462.1 CDS FP1585 NC_009613.1 1801808 1802386 R Similar to protein of unknown function; hypothetical protein complement(1801808..1802386) Flavobacterium psychrophilum JIP02/86 5300898 YP_001296463.1 CDS FP1586 NC_009613.1 1802399 1803577 R Similar to acetyl-CoA acetyltransferase COG0183; acetyl-CoA acetyltransferase complement(1802399..1803577) Flavobacterium psychrophilum JIP02/86 5300899 YP_001296464.1 CDS FP1587 NC_009613.1 1803635 1804225 R Similar to transcriptional regulator COG1309; TetR family transcriptional regulator complement(1803635..1804225) Flavobacterium psychrophilum JIP02/86 5298560 YP_001296465.1 CDS ribBA NC_009613.1 1806021 1807157 R Riboflavin biosynthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II complement(1806021..1807157) Flavobacterium psychrophilum JIP02/86 5298561 YP_001296466.1 CDS FP1590 NC_009613.1 1807144 1808598 R Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein complement(1807144..1808598) Flavobacterium psychrophilum JIP02/86 5299933 YP_001296467.1 CDS lolA NC_009613.1 1808604 1809245 R Participates in the translocation of lipoproteins from the inner membrane to the outer membrane; Outer-membrane lipoprotein carrier protein precursor LolA complement(1808604..1809245) Flavobacterium psychrophilum JIP02/86 5298562 YP_001296468.1 CDS ftsK NC_009613.1 1809250 1811712 R DNA motor protein, which is both required to move DNA out of the region of the septum during cell division and for the septum formation. Tracks DNA in an ATP- dependent manner by generating positive supercoils in front of it and negative supercoils behind it (By similarity); DNA translocase FtsK complement(1809250..1811712) Flavobacterium psychrophilum JIP02/86 5299295 YP_001296469.1 CDS dgkA NC_009613.1 1811905 1812285 R Recycling of diacylglycerol produced during the turnover of membrane phospholipid (by similarity); diacylglycerol kinase complement(1811905..1812285) Flavobacterium psychrophilum JIP02/86 5300231 YP_001296470.1 CDS tpx NC_009613.1 1812288 1812785 R Has antioxidant activity. Could remove peroxides or H(2)O(2) (by similarity); Thiol peroxidase complement(1812288..1812785) Flavobacterium psychrophilum JIP02/86 5299109 YP_001296471.1 CDS FP1595 NC_009613.1 1813170 1813493 D Similar to predicted transcriptional regulators COG0640; ArsR family transcriptional regulator 1813170..1813493 Flavobacterium psychrophilum JIP02/86 5299339 YP_001296472.1 CDS FP1596 NC_009613.1 1813557 1814030 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 1813557..1814030 Flavobacterium psychrophilum JIP02/86 5298563 YP_001296473.1 CDS FP1597 NC_009613.1 1814033 1814158 D hypothetical protein 1814033..1814158 Flavobacterium psychrophilum JIP02/86 5298564 YP_001296474.1 CDS FP1598 NC_009613.1 1814159 1814773 D S-methyltransferase family protein; hypothetical protein 1814159..1814773 Flavobacterium psychrophilum JIP02/86 5300003 YP_001296475.1 CDS FP1599 NC_009613.1 1814775 1815191 D Reduction of arsenate [As(V)] to arsenite [As(III)] (by similarity); arsenate reductase (glutaredoxin) 1814775..1815191 Flavobacterium psychrophilum JIP02/86 5300004 YP_001296476.1 CDS FP1600 NC_009613.1 1815440 1816435 R Similar to UDP-3-O-(R-3-hydroxymyristoyl)- glucosamine N-acyltransferase LpxD; putative UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1815440..1816435) Flavobacterium psychrophilum JIP02/86 5300005 YP_001296477.1 CDS menE NC_009613.1 1816460 1817509 R Menaquinone biosynthesis; o-succinylbenzoate--CoA ligase complement(1816460..1817509) Flavobacterium psychrophilum JIP02/86 5300006 YP_001296478.1 CDS yyaK NC_009613.1 1817502 1818455 R Similar to protein of unknown function YyaK of B. subtilis. Probable transmembrane protein; hypothetical protein complement(1817502..1818455) Flavobacterium psychrophilum JIP02/86 5299055 YP_001296479.1 CDS FP1603 NC_009613.1 1818535 1818876 D Reduction of arsenate [As(V)] to arsenite [As(III)] (by similarity); arsenate reductase (glutaredoxin) 1818535..1818876 Flavobacterium psychrophilum JIP02/86 5300506 YP_001296480.1 CDS FP1604 NC_009613.1 1819034 1821505 D Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor 1819034..1821505 Flavobacterium psychrophilum JIP02/86 5299970 YP_001296481.1 CDS FP1605 NC_009613.1 1822068 1822235 R hypothetical protein complement(1822068..1822235) Flavobacterium psychrophilum JIP02/86 5299971 YP_001296482.1 CDS fumC NC_009613.1 1822531 1823928 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1822531..1823928 Flavobacterium psychrophilum JIP02/86 5299972 YP_001296483.1 CDS FP1607 NC_009613.1 1824420 1825349 R hypothetical protein complement(1824420..1825349) Flavobacterium psychrophilum JIP02/86 5298509 YP_001296484.1 CDS FP1608 NC_009613.1 1825466 1827238 D Some similarities with fucose permease COG0738; putative sugar-transporting permease 1825466..1827238 Flavobacterium psychrophilum JIP02/86 5299973 YP_001296485.1 CDS yojE NC_009613.1 1827547 1828434 D Similar to predicted permeases COG2962 and to YojEprotein of B. subtilis; permease YojE 1827547..1828434 Flavobacterium psychrophilum JIP02/86 5299974 YP_001296486.1 CDS FP1610 NC_009613.1 1828732 1830267 R Similar to predicted ATPase with chaperone activity COG0606; hypothetical protein complement(1828732..1830267) Flavobacterium psychrophilum JIP02/86 5299024 YP_001296487.1 CDS FP1611 NC_009613.1 1830683 1831294 R hypothetical protein complement(1830683..1831294) Flavobacterium psychrophilum JIP02/86 5299802 YP_001296488.1 CDS FP1612 NC_009613.1 1831518 1832363 R Similar to predicted N-acetylglucosamine kinase COG2971; hypothetical protein complement(1831518..1832363) Flavobacterium psychrophilum JIP02/86 5299803 YP_001296489.1 CDS gapA3 NC_009613.1 1832512 1833513 R Second phase of glycolysis; first step (by similarity); glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) complement(1832512..1833513) Flavobacterium psychrophilum JIP02/86 5299804 YP_001296490.1 CDS pfkA NC_009613.1 1833574 1834560 R Key control step of glycolysis; 6-phosphofructokinase complement(1833574..1834560) Flavobacterium psychrophilum JIP02/86 5300332 YP_001296491.1 CDS FP1615 NC_009613.1 1834632 1839158 R Similar to protein of unknown function of the CFB phylum. Probable exported protein; hypothetical protein complement(1834632..1839158) Flavobacterium psychrophilum JIP02/86 5300487 YP_001296492.1 CDS gcp NC_009613.1 1839280 1840311 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 1839280..1840311 Flavobacterium psychrophilum JIP02/86 5299805 YP_001296493.1 CDS FP1617 NC_009613.1 1840313 1841017 D in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1840313..1841017 Flavobacterium psychrophilum JIP02/86 5300334 YP_001296494.1 CDS FP1618 NC_009613.1 1841051 1841689 D Similar to protein of unknown function of Cytophaga hutchinsonii and Xanthomonas sp.; hypothetical protein 1841051..1841689 Flavobacterium psychrophilum JIP02/86 5299806 YP_001296495.1 CDS FP1619 NC_009613.1 1841993 1842988 D M43 cytophagalysin family metalloprotease precursor 1841993..1842988 Flavobacterium psychrophilum JIP02/86 5299635 YP_001296496.1 CDS FP1620 NC_009613.1 1843070 1844158 D Similar to predicted permease COG0628; putative transporting permease 1843070..1844158 Flavobacterium psychrophilum JIP02/86 5299636 YP_001296497.1 CDS FP1621 NC_009613.1 1844158 1845336 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1844158..1845336 Flavobacterium psychrophilum JIP02/86 5299637 YP_001296498.1 CDS FP1622 NC_009613.1 1845342 1845911 D hypothetical protein 1845342..1845911 Flavobacterium psychrophilum JIP02/86 5299638 YP_001296499.1 CDS ddpX NC_009613.1 1845912 1846553 R Hydrolyzes D-Ala-D-Ala. May have a role in cell- wall turnover (by similarity); D-alanyl-D-alanine dipeptidase complement(1845912..1846553) Flavobacterium psychrophilum JIP02/86 5299905 YP_001296500.1 CDS FP1624 NC_009613.1 1846619 1847524 R Similar to putative lipoprotein of Streptomyces sp.; hypothetical protein complement(1846619..1847524) Flavobacterium psychrophilum JIP02/86 5300913 YP_001296501.1 CDS pabB NC_009613.1 1847701 1848987 D Cofactor biosynthesis; tetrahydrofolate biosynthesis; 4-aminobenzoate from chorismate: step 1 (by similarity); Para-aminobenzoate synthase component I 1847701..1848987 Flavobacterium psychrophilum JIP02/86 5299906 YP_001296502.1 CDS tilS NC_009613.1 1849129 1850433 D Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine (by similarity); tRNA(Ile)-lysidine synthase 1849129..1850433 Flavobacterium psychrophilum JIP02/86 5300143 YP_001296503.1 CDS dsbD NC_009613.1 1850508 1852520 D Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm, thereby maintaining the active site of dsbC, dsbE and dsbG in a reduced state.; Thiol:disulfide interchange protein DsbD precursor 1850508..1852520 Flavobacterium psychrophilum JIP02/86 5298675 YP_001296504.1 CDS dapD NC_009613.1 1853415 1854230 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1853415..1854230 Flavobacterium psychrophilum JIP02/86 5300855 YP_001296505.1 CDS FP1629 NC_009613.1 1854251 1855210 D hypothetical protein 1854251..1855210 Flavobacterium psychrophilum JIP02/86 5298535 YP_001296506.1 CDS lpsA NC_009613.1 1855325 1856293 D Similar to lipopolysaccharide core biosynthesis protein LpsA of Bacteroides sp.; lipopolysaccharide core biosynthesis protein LpsA 1855325..1856293 Flavobacterium psychrophilum JIP02/86 5299907 YP_001296507.1 CDS FP1631 NC_009613.1 1856446 1857561 D Similar to glycosyltransferase COG0438; putative mannosyltransferase 1856446..1857561 Flavobacterium psychrophilum JIP02/86 5300297 YP_001296508.1 CDS FP1632 NC_009613.1 1857543 1858289 R glycosyl transferase, group 2 family protein complement(1857543..1858289) Flavobacterium psychrophilum JIP02/86 5299908 YP_001296509.1 CDS FP1633 NC_009613.1 1858292 1859065 R Some similarities with predicted xylanase/chitin deacetylase COG0726; polysaccharide deacetylase complement(1858292..1859065) Flavobacterium psychrophilum JIP02/86 5299909 YP_001296510.1 CDS FP1634 NC_009613.1 1859065 1860003 R Similar to glycosyltransferases involved in cell wall biogenesis COG0463; glycosyl transferase, group 2 family protein complement(1859065..1860003) Flavobacterium psychrophilum JIP02/86 5299681 YP_001296511.1 CDS FP1635 NC_009613.1 1860006 1861190 R Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein complement(1860006..1861190) Flavobacterium psychrophilum JIP02/86 5299682 YP_001296512.1 CDS FP1636 NC_009613.1 1861200 1861922 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1861200..1861922) Flavobacterium psychrophilum JIP02/86 5299683 YP_001296513.1 CDS wbhW NC_009613.1 1862196 1863173 D Similar to protein of unknown function WbhW of Escherichia coli; hypothetical protein 1862196..1863173 Flavobacterium psychrophilum JIP02/86 5299684 YP_001296514.1 CDS FP1638 NC_009613.1 1863178 1864140 D Similar to glycosyltransferase involved in cell wall biogenesis COG0463; glycosyl transferase, group 2 family protein 1863178..1864140 Flavobacterium psychrophilum JIP02/86 5300711 YP_001296515.1 CDS FP1639 NC_009613.1 1864137 1865417 R glycosyl transferase, group 1 family protein complement(1864137..1865417) Flavobacterium psychrophilum JIP02/86 5299685 YP_001296516.1 CDS gmd NC_009613.1 1865579 1866613 D First of the three steps in the biosynthesis of GDP- fucose from GDP-mannose (by similarity); GDP-mannose 4,6-dehydratase 1865579..1866613 Flavobacterium psychrophilum JIP02/86 5298827 YP_001296517.1 CDS rmd NC_009613.1 1866597 1867490 D Similar to rmd of Xanthomonas campestris probably involved in lipopolysaccharide core biosynthesis; GDP-4-dehydro-D-rhamnose reductase 1866597..1867490 Flavobacterium psychrophilum JIP02/86 5298793 YP_001296518.1 CDS FP1642 NC_009613.1 1867542 1868645 D Similar to putative beta-glucosyltransferase cpsI of Streptococcus salivarius probably involved in exopolysaccharide biosynthesis; glycosyl transferase, group 2 family protein 1867542..1868645 Flavobacterium psychrophilum JIP02/86 5299734 YP_001296519.1 CDS FP1643 NC_009613.1 1868658 1869224 D Similar to putative translation factor (SUA5) COG0009; putative translation factor 1868658..1869224 Flavobacterium psychrophilum JIP02/86 5298828 YP_001296520.1 CDS cca NC_009613.1 1869279 1870700 D This enzyme carries out synthesis of the tRNA CCA terminus without the direction of a template using the multiple accepting and donating subsites within its active site (by similarity); tRNA nucleotidyltransferase 1869279..1870700 Flavobacterium psychrophilum JIP02/86 5298829 YP_001296521.1 CDS coxA NC_009613.1 1870786 1871805 D Required for the assembly of yeast cytochrome oxidase. Involved in the biosynthesis of heme A and the initial step in this pathway, the hydroxylation of heme O, is thought to be catalyzed by a three-component mono- oxygenase consisting of CoxA, ferredoxin and ferredoxin reductase (by similarity); cytochrome c oxidase assembly protein 1870786..1871805 Flavobacterium psychrophilum JIP02/86 5299178 YP_001296522.1 CDS FP1646 NC_009613.1 1871910 1872683 D Probable transmembrane protein probably involved in phospholipid biosynthesis; CDP-alcohol phosphatidyltransferase class-I family protein 1871910..1872683 Flavobacterium psychrophilum JIP02/86 5300436 YP_001296523.1 CDS FP1647 NC_009613.1 1872776 1873537 R two-component system response regulatory protein complement(1872776..1873537) Flavobacterium psychrophilum JIP02/86 5298830 YP_001296524.1 CDS FP1648 NC_009613.1 1873607 1873957 R Similar to protein of unknown function of Bacilluscereus. Probable transmembrane protein; hypothetical protein complement(1873607..1873957) Flavobacterium psychrophilum JIP02/86 5298689 YP_001296525.1 CDS FP1649 NC_009613.1 1873965 1874270 R Similar to protein of unknown function of Bacilluscereus. Probable transmembrane protein; hypothetical protein complement(1873965..1874270) Flavobacterium psychrophilum JIP02/86 5298690 YP_001296526.1 CDS FP1650 NC_009613.1 1874273 1874599 R Probable transmembrane protein; hypothetical protein complement(1874273..1874599) Flavobacterium psychrophilum JIP02/86 5298691 YP_001296527.1 CDS FP1651 NC_009613.1 1874602 1875969 R two-component system sensor complement(1874602..1875969) Flavobacterium psychrophilum JIP02/86 5298692 YP_001296528.1 CDS FP1652 NC_009613.1 1876028 1876648 R Similar to protein of unknown function of Porphyromonas gingivalis; hypothetical protein complement(1876028..1876648) Flavobacterium psychrophilum JIP02/86 5298693 YP_001296529.1 CDS FP1653 NC_009613.1 1876770 1878923 R Probable outer membrane receptor protein; outer membrane protein complement(1876770..1878923) Flavobacterium psychrophilum JIP02/86 5298911 YP_001296530.1 CDS FP1654 NC_009613.1 1879367 1879741 D hypothetical protein 1879367..1879741 Flavobacterium psychrophilum JIP02/86 5298912 YP_001296531.1 CDS FP1655 NC_009613.1 1879754 1880593 D Some weak similarities with cell surface protein; hypothetical protein 1879754..1880593 Flavobacterium psychrophilum JIP02/86 5298913 YP_001296532.1 CDS FP1656 NC_009613.1 1880680 1881219 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1880680..1881219 Flavobacterium psychrophilum JIP02/86 5298914 YP_001296533.1 CDS FP1657 NC_009613.1 1881308 1881619 D Similar to protein of unknown function; hypothetical protein 1881308..1881619 Flavobacterium psychrophilum JIP02/86 5298915 YP_001296534.1 CDS FP1658 NC_009613.1 1881676 1882734 D Similar to protein of unknown function; hypothetical protein 1881676..1882734 Flavobacterium psychrophilum JIP02/86 5300562 YP_001296535.1 CDS FP1659 NC_009613.1 1882939 1883862 D ABC transporter, ATP-binding protein (ABC), DRI- family, LAI-subfamily, drug export (putative), TC 3.A.1.Y.Z; ABC transporter ATPase 1882939..1883862 Flavobacterium psychrophilum JIP02/86 5300563 YP_001296536.1 CDS FP1660 NC_009613.1 1883898 1884734 D ABC transporter, permease (IM), DRI-family, LAI- subfamily, drug export (putative), TC 3.A.1.Y.Z; ABC transporter permease 1883898..1884734 Flavobacterium psychrophilum JIP02/86 5300564 YP_001296537.1 CDS FP1661 NC_009613.1 1884749 1887022 D Some similarities with hemagglutinin-related protein; hypothetical protein 1884749..1887022 Flavobacterium psychrophilum JIP02/86 5300565 YP_001296538.1 CDS FP1662 NC_009613.1 1887062 1889458 D Some weak similarities with protein of unknown function of the CFB phylum. Probable exported protein; hypothetical protein 1887062..1889458 Flavobacterium psychrophilum JIP02/86 5300036 YP_001296539.1 CDS gldD NC_009613.1 1889493 1890056 R Highly similar to gliding motility protein GldD ofFlavobacterium johnsoniae, a probable cytoplasmic membrane protein; gliding motility protein GldD complement(1889493..1890056) Flavobacterium psychrophilum JIP02/86 5300037 YP_001296540.1 CDS ssb NC_009613.1 1890067 1890489 R Highly similar to Ssb protein of Flavobacterium johnsoniae; single-strand DNA-binding protein Ssb complement(1890067..1890489) Flavobacterium psychrophilum JIP02/86 5299069 YP_001296541.1 CDS mutY NC_009613.1 1890530 1891561 R Adenine glycosylase active on G-A mispairs. MutY also corrects error-prone DNA synthesis past go lesions which are due to the oxidatively damaged form of guanine: 7,8-dihydro-8-oxoguanine (by similarity); A/G-specific adenine glycosylase complement(1890530..1891561) Flavobacterium psychrophilum JIP02/86 5300593 YP_001296542.1 CDS hupA NC_009613.1 1891691 1891987 D Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions (by similarity); histone-like DNA-binding protein HU-alpha 1891691..1891987 Flavobacterium psychrophilum JIP02/86 5300704 YP_001296543.1 CDS cafA NC_009613.1 1892372 1893916 D Involved in the processing of the 5'end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmicaxial filaments bundles or merely regulate the formation of this structure (by similarity); ribonuclease G 1892372..1893916 Flavobacterium psychrophilum JIP02/86 5299008 YP_001296544.1 CDS mrp NC_009613.1 1894070 1895206 D Similar to ATPases involved in chromosome partitioning COG0489; ATP-binding Mrp/Nbp35 family protein 1894070..1895206 Flavobacterium psychrophilum JIP02/86 5299129 YP_001296545.1 CDS FP1669 NC_009613.1 1895210 1895449 D Similar to thioredoxin-like proteins and domains COG0694; NifU-like protein 1895210..1895449 Flavobacterium psychrophilum JIP02/86 5299207 YP_001296546.1 CDS trxB2 NC_009613.1 1895641 1896696 D thioredoxin-disulfide reductase 1895641..1896696 Flavobacterium psychrophilum JIP02/86 5300038 YP_001296547.1 CDS FP1671 NC_009613.1 1896696 1897259 D Some weak similarities with proteins of unknown function; hypothetical protein 1896696..1897259 Flavobacterium psychrophilum JIP02/86 5299825 YP_001296548.1 CDS FP1672 NC_009613.1 1897266 1898132 R Similar to Fjo11 protein of Flavobacterium johnsoniae. Probable transmembrane protein; hypothetical protein complement(1897266..1898132) Flavobacterium psychrophilum JIP02/86 5300039 YP_001296549.1 CDS FP1675 NC_009613.1 1898753 1899097 R Weakly similar to protein of unknown function of Brucella sp. and Rhizobium loti; hypothetical protein complement(1898753..1899097) Flavobacterium psychrophilum JIP02/86 5299994 YP_001296550.1 CDS menD NC_009613.1 1899171 1900823 R Menaquinone biosynthesis; first step (by similarity); menaquinone biosynthesis protein MenD: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase and 2-oxoglutarate decarboxylase complement(1899171..1900823) Flavobacterium psychrophilum JIP02/86 5299995 YP_001296551.1 CDS yncA NC_009613.1 1900902 1901399 D Similar to sortase and related acyltransferases COG1247; phosphinothricin N-acetyltransferase YncA 1900902..1901399 Flavobacterium psychrophilum JIP02/86 5299054 YP_001296552.1 CDS prmA NC_009613.1 1901529 1902362 D methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase 1901529..1902362 Flavobacterium psychrophilum JIP02/86 5299022 YP_001296553.1 CDS FP1679 NC_009613.1 1902403 1902678 D Weakly similar to uncharacterized conserved protein COG2127; hypothetical protein 1902403..1902678 Flavobacterium psychrophilum JIP02/86 5299141 YP_001296554.1 CDS FP1680 NC_009613.1 1902712 1903035 D Probable transmembrane protein; hypothetical protein 1902712..1903035 Flavobacterium psychrophilum JIP02/86 5299996 YP_001296555.1 CDS FP1681 NC_009613.1 1903094 1903273 D hypothetical protein 1903094..1903273 Flavobacterium psychrophilum JIP02/86 5299997 YP_001296556.1 CDS FP1682 NC_009613.1 1903280 1903945 D Similar to predicted membrane protein COG3714; hypothetical protein 1903280..1903945 Flavobacterium psychrophilum JIP02/86 5299989 YP_001296557.1 CDS FP1683 NC_009613.1 1903942 1904355 R Similar to protein of unknown function of Cytophaga hutchinsonii and Deinococcus radiodurans. Probable transmembrane protein; hypothetical protein complement(1903942..1904355) Flavobacterium psychrophilum JIP02/86 5299990 YP_001296558.1 CDS FP1684 NC_009613.1 1904360 1904917 R Similar to protein of unknown function of Cytophaga hutchinsonii and Deinococcus radiodurans. Probable transmembrane protein; hypothetical protein complement(1904360..1904917) Flavobacterium psychrophilum JIP02/86 5299991 YP_001296559.1 CDS FP1685 NC_009613.1 1904988 1905440 D Some similarities with fibril protein of Myxococcus xanthus; hypothetical protein 1904988..1905440 Flavobacterium psychrophilum JIP02/86 5299992 YP_001296560.1 CDS FP1686 NC_009613.1 1905460 1906437 D Similar to uncharacterized conserved protein COG1284. Probable transmembrane protein; hypothetical protein 1905460..1906437 Flavobacterium psychrophilum JIP02/86 5299807 YP_001296561.1 CDS FP1687 NC_009613.1 1906562 1908292 R Probably involved in the regulation of the kdp operon; two-component system sensor histidine kinase complement(1906562..1908292) Flavobacterium psychrophilum JIP02/86 5299808 YP_001296562.1 CDS FP1688 NC_009613.1 1908320 1909447 R Probably involved in the regulation of the kdp operon; two-component system sensory protein complement(1908320..1909447) Flavobacterium psychrophilum JIP02/86 5299809 YP_001296563.1 CDS FP1689 NC_009613.1 1909576 1910652 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(1909576..1910652) Flavobacterium psychrophilum JIP02/86 5299810 YP_001296564.1 CDS kdpC NC_009613.1 1910938 1911492 R one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex; potassium-transporting ATPase subunit C complement(1910938..1911492) Flavobacterium psychrophilum JIP02/86 5299811 YP_001296565.1 CDS kdpB NC_009613.1 1911545 1913578 R One of the components of the high-affinity ATP- driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogenand potassium ions (by similarity); potassium-transporting ATPase B subunit complement(1911545..1913578) Flavobacterium psychrophilum JIP02/86 5300840 YP_001296566.1 CDS kdpA NC_009613.1 1913679 1915400 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(1913679..1915400) Flavobacterium psychrophilum JIP02/86 5300839 YP_001296567.1 CDS FP1693 NC_009613.1 1915967 1916248 R hypothetical protein complement(1915967..1916248) Flavobacterium psychrophilum JIP02/86 5298930 YP_001296568.1 CDS FP1694 NC_009613.1 1916412 1917752 R Similar to response regulator containing CheY- likereceiver, AAA-type ATPase, and DNA-binding domains COG2204; sigma-54 dependent two-component system response regulatory protein complement(1916412..1917752) Flavobacterium psychrophilum JIP02/86 5299591 YP_001296569.1 CDS FP1695 NC_009613.1 1917991 1918278 R Putative heme binding lipoprotein; hypothetical protein complement(1917991..1918278) Flavobacterium psychrophilum JIP02/86 5299592 YP_001296570.1 CDS aspC2 NC_009613.1 1918505 1919695 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(1918505..1919695) Flavobacterium psychrophilum JIP02/86 5299593 YP_001296571.1 CDS FP1697 NC_009613.1 1919953 1920387 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(1919953..1920387) Flavobacterium psychrophilum JIP02/86 5299240 YP_001296572.1 CDS valS NC_009613.1 1920706 1923333 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1920706..1923333 Flavobacterium psychrophilum JIP02/86 5299594 YP_001296573.1 CDS FP1699 NC_009613.1 1923509 1924396 R Probable exported protein similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(1923509..1924396) Flavobacterium psychrophilum JIP02/86 5299717 YP_001296574.1 CDS FP1700 NC_009613.1 1924513 1925547 D Similar to arginase/agmatinase/formimionoglutamatehydrolase, arginase family COG0010; hypothetical protein 1924513..1925547 Flavobacterium psychrophilum JIP02/86 5299595 YP_001296575.1 CDS FP1701 NC_009613.1 1925656 1926900 D Similar to superfamily II DNA and RNA helicase COG0513; DEAD-box ATP dependent DNA helicase 1925656..1926900 Flavobacterium psychrophilum JIP02/86 5299083 YP_001296576.1 CDS FP1702 NC_009613.1 1927274 1927831 D Probable transmembrane protein. The exact molecular function of this protein is uncertain (by similarity); LemA family protein 1927274..1927831 Flavobacterium psychrophilum JIP02/86 5299084 YP_001296577.1 CDS FP1703 NC_009613.1 1927835 1929739 D Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein 1927835..1929739 Flavobacterium psychrophilum JIP02/86 5299085 YP_001296578.1 CDS pdxH NC_009613.1 1930136 1930780 R De novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. Oxidizes PNP and PMP into pyridoxal 5'-phosphate (PLP) (by similarity); pyridoxamine 5'-phosphate oxidase complement(1930136..1930780) Flavobacterium psychrophilum JIP02/86 5299086 YP_001296579.1 CDS rnz NC_009613.1 1930870 1931775 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(1930870..1931775) Flavobacterium psychrophilum JIP02/86 5299095 YP_001296580.1 CDS FP1706 NC_009613.1 1931775 1932947 R Similar to carbapenem antibiotics biosynthesis protein and proline dehydrogenase. Probably involved in antibiotic resistance; putative antibiotic resistance protein complement(1931775..1932947) Flavobacterium psychrophilum JIP02/86 5299771 YP_001296581.1 CDS aroB NC_009613.1 1933045 1934112 D Aromatic amino acids biosynthesis. Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and PEP: step 2 (by similarity); 3-dehydroquinate synthase 1933045..1934112 Flavobacterium psychrophilum JIP02/86 5299073 YP_001296582.1 CDS speA NC_009613.1 1934388 1935782 D Putrescine and spermidine biosynthesis from arginine; first step.; arginine decarboxylase 1934388..1935782 Flavobacterium psychrophilum JIP02/86 5300715 YP_001296583.1 CDS FP1709 NC_009613.1 1935963 1936934 D Similar to eukaryotic deoxyhypusine synthase COG1899; hypothetical protein 1935963..1936934 Flavobacterium psychrophilum JIP02/86 5300760 YP_001296584.1 CDS FP1710 NC_009613.1 1936944 1937351 D hypothetical protein 1936944..1937351 Flavobacterium psychrophilum JIP02/86 5299074 YP_001296585.1 CDS nupG NC_009613.1 1937401 1938654 R Transports nucleosides with a high affinity. Driven by a proton motive force (by similarity). TC 2.1.A.10 .Z; major facilitator superfamily H(+)/nucleoside permease complement(1937401..1938654) Flavobacterium psychrophilum JIP02/86 5299075 YP_001296586.1 CDS cmk NC_009613.1 1938727 1939407 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(1938727..1939407) Flavobacterium psychrophilum JIP02/86 5298982 YP_001296587.1 CDS FP1713 NC_009613.1 1939590 1940621 R Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein complement(1939590..1940621) Flavobacterium psychrophilum JIP02/86 5298771 YP_001296588.1 CDS lon NC_009613.1 1940796 1943246 R Degrades short-lived regulatory and abnormal proteins in presence of ATP. Degrades the regulatory proteins rcsA and sulA. Hydrolyzes two ATPs for each peptide bond cleaved in the protein substrate (by similarity); ATP-dependent endopeptidase La complement(1940796..1943246) Flavobacterium psychrophilum JIP02/86 5299076 YP_001296589.1 CDS FP1715 NC_009613.1 1943424 1944773 R Major Facilitator Superfamily (MFS). TC 2.A.1.Y.Z; major facilitator superfamily permease complement(1943424..1944773) Flavobacterium psychrophilum JIP02/86 5300294 YP_001296590.1 CDS FP1716 NC_009613.1 1945048 1945860 R Similar to Zn-dependent protease with chaperone function COG0501. Probable lipoprotein; M48 family metalloprotease complement(1945048..1945860) Flavobacterium psychrophilum JIP02/86 5299077 YP_001296591.1 CDS FP1717 NC_009613.1 1946138 1946875 D Similar to predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) COG0596; hypothetical protein 1946138..1946875 Flavobacterium psychrophilum JIP02/86 5300395 YP_001296592.1 CDS mrsB1 NC_009613.1 1946886 1947368 D protein-methionine-S-oxide reductase MrsB1 1946886..1947368 Flavobacterium psychrophilum JIP02/86 5300396 YP_001296593.1 CDS mrsB2 NC_009613.1 1947447 1947833 D protein-methionine-S-oxide reductase MrsB2 1947447..1947833 Flavobacterium psychrophilum JIP02/86 5299209 YP_001296594.1 CDS fadD NC_009613.1 1947896 1949668 D Esterification, concomitant with transport, of exogenous long-chain fatty acids into metabolically active CoA thioesters for subsequent degradation or incorporation into phospholipids (by similarity); long-chain-fatty-acid--CoA ligase 1947896..1949668 Flavobacterium psychrophilum JIP02/86 5299210 YP_001296595.1 CDS ggt NC_009613.1 1949749 1951434 D GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione(by simillarity); gamma-glutamyltransferase 1949749..1951434 Flavobacterium psychrophilum JIP02/86 5298892 YP_001296596.1 CDS FP1722 NC_009613.1 1951898 1952365 D Similar to transcriptional regulators COG1846; MarR family transcriptional regulator 1951898..1952365 Flavobacterium psychrophilum JIP02/86 5300561 YP_001296597.1 CDS FP1723 NC_009613.1 1952349 1954739 D 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase/isomerase family protein 1952349..1954739 Flavobacterium psychrophilum JIP02/86 5300397 YP_001296598.1 CDS FP1724 NC_009613.1 1954784 1955164 D Similar to protein of unknown function; hypothetical protein 1954784..1955164 Flavobacterium psychrophilum JIP02/86 5300398 YP_001296599.1 CDS FP1725 NC_009613.1 1955299 1956480 D Lipid catabolism; beta-oxidation cycle; from acyl- CoA: step C (by similarity); Acetyl-CoA C-acyltransferase 1955299..1956480 Flavobacterium psychrophilum JIP02/86 5300399 YP_001296600.1 CDS FP1726 NC_009613.1 1956643 1958433 D Acyl-CoA dehydrogenase family protein 1956643..1958433 Flavobacterium psychrophilum JIP02/86 5300793 YP_001296601.1 CDS FP1727 NC_009613.1 1958484 1958741 R hypothetical protein complement(1958484..1958741) Flavobacterium psychrophilum JIP02/86 5300794 YP_001296602.1 CDS FP1728 NC_009613.1 1958781 1959092 R Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein complement(1958781..1959092) Flavobacterium psychrophilum JIP02/86 5300795 YP_001296603.1 CDS FP1729 NC_009613.1 1959177 1959815 R Similar to peroxiredoxin COG0450. Peroxiredoxins are a ubiquitous family of antioxidant proteins; peroxiredoxin complement(1959177..1959815) Flavobacterium psychrophilum JIP02/86 5300796 YP_001296604.1 CDS catG NC_009613.1 1959991 1962198 R Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide; bi-functional catalase-peroxidase complement(1959991..1962198) Flavobacterium psychrophilum JIP02/86 5300104 YP_001296605.1 CDS FP1731 NC_009613.1 1962691 1964448 D Some weak similarities with putative lipase; esterase/lipase/thioesterase family protein 1962691..1964448 Flavobacterium psychrophilum JIP02/86 5300202 YP_001296606.1 CDS FP1732 NC_009613.1 1964715 1966664 D Amino Acid-Polyamine-Organocation (APC) Superfamily. TC 2.A.3.Y.Z; amino acid-transporting permease 1964715..1966664 Flavobacterium psychrophilum JIP02/86 5300105 YP_001296607.1 CDS FP1733 NC_009613.1 1966743 1967945 R Cys/Met metabolism PLP-dependent enzyme complement(1966743..1967945) Flavobacterium psychrophilum JIP02/86 5300106 YP_001296608.1 CDS FP1734 NC_009613.1 1968331 1968789 D Similar to transcriptional regulator COG1522; AsnC family transcriptional regulator 1968331..1968789 Flavobacterium psychrophilum JIP02/86 5300107 YP_001296609.1 CDS lpdA1 NC_009613.1 1968876 1970279 D Catalyzes the oxidation of dihydrolipoamide to lipoamide. Component of two multienzyme complexes: pyruvate dehydrogenase complex and oxoglutarate dehydrogenase complex.; dihydrolipoyl dehydrogenase 1968876..1970279 Flavobacterium psychrophilum JIP02/86 5300108 YP_001296610.1 CDS sodC NC_009613.1 1970365 1970886 D Cu-Zn; copper/zinc; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (bysimilarity); superoxide dismutase 1970365..1970886 Flavobacterium psychrophilum JIP02/86 5300295 YP_001296611.1 CDS FP1737 NC_009613.1 1971034 1972230 D hypothetical protein 1971034..1972230 Flavobacterium psychrophilum JIP02/86 5300759 YP_001296612.1 CDS oxyR NC_009613.1 1972292 1973233 D Hydrogen peroxide sensor. Activates the expressionof a regulon of hydrogen peroxide-inducible genes (by similarity); redox-sensitive transcriptional activator OxyR 1972292..1973233 Flavobacterium psychrophilum JIP02/86 5300488 YP_001296613.1 CDS FP1739 NC_009613.1 1973460 1973657 R Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(1973460..1973657) Flavobacterium psychrophilum JIP02/86 5300163 YP_001296614.1 CDS FP1740 NC_009613.1 1973733 1974398 R Similar to uncharacterized conserved protein COG4121; hypothetical protein complement(1973733..1974398) Flavobacterium psychrophilum JIP02/86 5300489 YP_001296615.1 CDS FP1741 NC_009613.1 1974644 1975711 D Similar to branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase COG0115; branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase family protein 1974644..1975711 Flavobacterium psychrophilum JIP02/86 5300490 YP_001296616.1 CDS FP1742 NC_009613.1 1975788 1976174 R Similar to uncharacterized conserved protein COG4696; hypothetical protein complement(1975788..1976174) Flavobacterium psychrophilum JIP02/86 5300491 YP_001296617.1 CDS FP1743 NC_009613.1 1976421 1976609 D hypothetical protein 1976421..1976609 Flavobacterium psychrophilum JIP02/86 5300492 YP_001296618.1 CDS FP1744 NC_009613.1 1976673 1977701 D Probable exported protein; hypothetical protein 1976673..1977701 Flavobacterium psychrophilum JIP02/86 5299962 YP_001296619.1 CDS FP1745 NC_009613.1 1977709 1978419 R Similar to dinucleotide-utilizing enzymes involvedin molybdopterin and thiamine biosynthesis family 1 COG1179; putative dinucleotide-utilizing enzyme involvedin molybdopterin and thiamine biosynthesis complement(1977709..1978419) Flavobacterium psychrophilum JIP02/86 5299963 YP_001296620.1 CDS FP1746 NC_009613.1 1978513 1979169 R Similar to Mg-dependent DNase COG0084; TatD-related DNase complement(1978513..1979169) Flavobacterium psychrophilum JIP02/86 5299964 YP_001296621.1 CDS FP1747 NC_009613.1 1979169 1979768 R Similar to uncharacterized conserved protein COG3358; hypothetical protein complement(1979169..1979768) Flavobacterium psychrophilum JIP02/86 5299965 YP_001296622.1 CDS FP1748 NC_009613.1 1979855 1981087 D Major Facilitator Superfamily (MFS). TC 2.A.1.Y.Z.; major facilitator superfamily permease 1979855..1981087 Flavobacterium psychrophilum JIP02/86 5300672 YP_001296623.1 CDS FP1749 NC_009613.1 1981153 1981512 D Similar to predicted transcriptional regulator COG3682. Probable repressor; transcriptional regulator 1981153..1981512 Flavobacterium psychrophilum JIP02/86 5300673 YP_001296624.1 CDS FP1750 NC_009613.1 1981517 1983178 D Some similarities with antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component COG4219; putative antirepressor 1981517..1983178 Flavobacterium psychrophilum JIP02/86 5300674 YP_001296625.1 CDS FP1751 NC_009613.1 1983311 1983724 D similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 1983311..1983724 Flavobacterium psychrophilum JIP02/86 5300675 YP_001296626.1 CDS mqo NC_009613.1 1983836 1985326 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 1983836..1985326 Flavobacterium psychrophilum JIP02/86 5300676 YP_001296627.1 CDS def NC_009613.1 1985517 1986101 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1985517..1986101 Flavobacterium psychrophilum JIP02/86 5300112 YP_001296628.1 CDS FP1754 NC_009613.1 1986168 1986707 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 1986168..1986707 Flavobacterium psychrophilum JIP02/86 5300914 YP_001296629.1 CDS mazG NC_009613.1 1986806 1987579 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1986806..1987579 Flavobacterium psychrophilum JIP02/86 5300900 YP_001296630.1 CDS FP1756 NC_009613.1 1987655 1988446 D Similar to predicted hydrolase of the alpha/beta superfamily COG2819; hypothetical protein 1987655..1988446 Flavobacterium psychrophilum JIP02/86 5300901 YP_001296631.1 CDS FP1757 NC_009613.1 1988600 1989448 D C-terminal region similar to AraC-type DNA- bindingdomain-containing proteins COG2207; AraC family transcriptional regulator 1988600..1989448 Flavobacterium psychrophilum JIP02/86 5300902 YP_001296632.1 CDS FP1758 NC_009613.1 1989694 1990092 D Similar to uncharacterized protein, possibly involved in utilization of glycolate and propanediol COG3193; hypothetical protein 1989694..1990092 Flavobacterium psychrophilum JIP02/86 5300903 YP_001296633.1 CDS FP1759 NC_009613.1 1990358 1990483 R hypothetical protein complement(1990358..1990483) Flavobacterium psychrophilum JIP02/86 5300904 YP_001296634.1 CDS FP1760 NC_009613.1 1991107 1991760 D hypothetical protein 1991107..1991760 Flavobacterium psychrophilum JIP02/86 5300939 YP_001296635.1 CDS pafA NC_009613.1 1992053 1993666 R Similar to PI-irrepressible alkaline phosphatase PafA of Flavobacterium meningosepticum; alkaline phosphatase complement(1992053..1993666) Flavobacterium psychrophilum JIP02/86 5300940 YP_001296636.1 CDS FP1762 NC_009613.1 1993750 1994688 R Similar to dioxygenases related to 2-nitropropane dioxygenase COG2070; dioxygenase complement(1993750..1994688) Flavobacterium psychrophilum JIP02/86 5300145 YP_001296637.1 CDS FP1763 NC_009613.1 1994809 1996443 R Hydrolysis of proteins with broad specificity for peptide bonds, and a preference for a large uncharged residue in P1. Hydrolyzes peptide amides (by similarity); serine endopeptidase complement(1994809..1996443) Flavobacterium psychrophilum JIP02/86 5300941 YP_001296638.1 CDS FP1764 NC_009613.1 1996960 1998651 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1996960..1998651 Flavobacterium psychrophilum JIP02/86 5300942 YP_001296639.1 CDS cplB NC_009613.1 1999182 2001782 R Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with dnaK, dnaJ and grpE. Acts before dnaK, in the processing of protein aggregates (by similarity); ATPase with chaperone activity ATP-binding subunit complement(1999182..2001782) Flavobacterium psychrophilum JIP02/86 5300943 YP_001296640.1 CDS FP1766 NC_009613.1 2002007 2003884 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2002007..2003884) Flavobacterium psychrophilum JIP02/86 5300439 YP_001296641.1 CDS FP1767 NC_009613.1 2004207 2004869 D Catalyzes the phosphorylation of thiamine to thiamine pyrophosphate; thiamine diphosphokinase 2004207..2004869 Flavobacterium psychrophilum JIP02/86 5300032 YP_001296642.1 CDS FP1768 NC_009613.1 2004948 2005892 D Similar to predicted SAM-dependent methyltransferase COG3129; putative SAM-dependent methyltransferase 2004948..2005892 Flavobacterium psychrophilum JIP02/86 5300033 YP_001296643.1 CDS aroE NC_009613.1 2005908 2006645 R Aromatic amino acids biosynthesis. Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and PEP: step 4 (by similarity); shikimate dehydrogenase complement(2005908..2006645) Flavobacterium psychrophilum JIP02/86 5300034 YP_001296644.1 CDS FP1770 NC_009613.1 2006799 2008193 R Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(2006799..2008193) Flavobacterium psychrophilum JIP02/86 5300717 YP_001296645.1 CDS argD NC_009613.1 2008457 2009653 R Arginine biosynthesis; fourth step and L-lysine biosynthesis via DAP pathway; LL-diaminopimelate from tetrahydrodipicolinate (succinylase route): step 2 (by similarity); acetylornithine/ succinyldiaminopimelatetransamin ase complement(2008457..2009653) Flavobacterium psychrophilum JIP02/86 5300035 YP_001296646.1 CDS FP1772 NC_009613.1 2009710 2011365 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2009710..2011365) Flavobacterium psychrophilum JIP02/86 5300807 YP_001296647.1 CDS FP1773 NC_009613.1 2011592 2013412 R Similar to chloride channel protein EriC COG0038. TC 1.A.11.Y.Z; chloride channel protein complement(2011592..2013412) Flavobacterium psychrophilum JIP02/86 5299925 YP_001296648.1 CDS nhaA NC_009613.1 2013544 2014698 D This is a Na(+)/H(+) antiporter. It can mediate sodium uptake when a transmembrane pH gradient is applied. It probably acts in the regulation of internal pH at the alkaline pH range. It catalyzes the exchange of 2 H(+) per Na(+). Its activity is highly dependent on the pH (by similarity); Na+/H+ antiporter 2013544..2014698 Flavobacterium psychrophilum JIP02/86 5299926 YP_001296649.1 CDS mnmA NC_009613.1 2014756 2015943 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2014756..2015943 Flavobacterium psychrophilum JIP02/86 5298852 YP_001296650.1 CDS FP1778 NC_009613.1 2021916 2022608 R Similar to predicted membrane protein COG4420; hypothetical protein complement(2021916..2022608) Flavobacterium psychrophilum JIP02/86 5299928 YP_001296651.1 CDS corA NC_009613.1 2022776 2023846 R Metal Ion Transporter (MIT) family protein, TC 1.A.35; magnesium/cobalt transporter CorA complement(2022776..2023846) Flavobacterium psychrophilum JIP02/86 5299929 YP_001296652.1 CDS hutI NC_009613.1 2023995 2025230 D catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 2023995..2025230 Flavobacterium psychrophilum JIP02/86 5300435 YP_001296653.1 CDS FP1781 NC_009613.1 2025405 2025656 D Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clustersin a wide variety of iron-sulfur proteins (by similarity); ferredoxin 2025405..2025656 Flavobacterium psychrophilum JIP02/86 5300094 YP_001296654.1 CDS ftnA NC_009613.1 2025717 2026244 R Iron-storage protein (by similarity); Ferritin complement(2025717..2026244) Flavobacterium psychrophilum JIP02/86 5299783 YP_001296655.1 CDS FP1783 NC_009613.1 2026375 2026722 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2026375..2026722) Flavobacterium psychrophilum JIP02/86 5300183 YP_001296656.1 CDS FP1784 NC_009613.1 2026899 2028431 R Similar to protein of unknown function of Bacteroides fragilis; hypothetical protein complement(2026899..2028431) Flavobacterium psychrophilum JIP02/86 5299784 YP_001296657.1 CDS FP1785 NC_009613.1 2028578 2030740 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(2028578..2030740) Flavobacterium psychrophilum JIP02/86 5299785 YP_001296658.1 CDS FP1786 NC_009613.1 2030839 2031252 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2030839..2031252) Flavobacterium psychrophilum JIP02/86 5299786 YP_001296659.1 CDS FP1788 NC_009613.1 2031506 2031772 R hypothetical protein complement(2031506..2031772) Flavobacterium psychrophilum JIP02/86 5299787 YP_001296660.1 CDS manA NC_009613.1 2031856 2032824 R Involved in the conversion of glucose to GDP-L- fucose, which can be converted to L-fucose, a capsular polysaccharide (by similarity); mannose-6-phosphate isomerase complement(2031856..2032824) Flavobacterium psychrophilum JIP02/86 5299917 YP_001296661.1 CDS FP1790 NC_009613.1 2032973 2033431 R Similar to peroxiredoxin Q of eukaryotes. Peroxiredoxins are a ubiquitous family of antioxidant proteins; peroxiredoxin complement(2032973..2033431) Flavobacterium psychrophilum JIP02/86 5299589 YP_001296662.1 CDS ygcM NC_009613.1 2033431 2033841 R Tetrahydrobiopterin biosynthesis; second step; 6-pyruvoyltetrahydrobiopterin synthase complement(2033431..2033841) Flavobacterium psychrophilum JIP02/86 5300261 YP_001296663.1 CDS idi NC_009613.1 2033941 2034468 R Isoprenoid biosynthesis; dimethylallyl-PP biosynthesis; dimethylallyl-PP from isopentenyl-PP: single step [final step] (by similarity); isopentenyl-diphosphate delta-isomerase complement(2033941..2034468) Flavobacterium psychrophilum JIP02/86 5300966 YP_001296664.1 CDS rpsA NC_009613.1 2034678 2036468 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2034678..2036468) Flavobacterium psychrophilum JIP02/86 5299547 YP_001296665.1 CDS FP1794 NC_009613.1 2036807 2037136 R hypothetical protein complement(2036807..2037136) Flavobacterium psychrophilum JIP02/86 5300685 YP_001296666.1 CDS pyrB NC_009613.1 2037146 2038072 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(2037146..2038072) Flavobacterium psychrophilum JIP02/86 5300262 YP_001296667.1 CDS pyrR1 NC_009613.1 2038074 2038610 R Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine- dependent manner to specific sites on pyr mRNA. Displays also a weak uracil phosphoribosyltransferase activity which is not physiologically significant (by similarity); bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase complement(2038074..2038610) Flavobacterium psychrophilum JIP02/86 5300530 YP_001296668.1 CDS FP1797 NC_009613.1 2038693 2039970 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(2038693..2039970) Flavobacterium psychrophilum JIP02/86 5299469 YP_001296669.1 CDS crcB NC_009613.1 2039967 2040341 R Function not known. In E. coli overproduction leads to camphor resistance and chromosome condensation; deletion increases sensibility to nucleoid decondensation. Probably interacts with the heat-shock protein cspE, possibly providing a way to anchor the chromosome to the membrane; hypothetical protein complement(2039967..2040341) Flavobacterium psychrophilum JIP02/86 5300263 YP_001296670.1 CDS FP1799 NC_009613.1 2040342 2042759 R Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein complement(2040342..2042759) Flavobacterium psychrophilum JIP02/86 5298840 YP_001296671.1 CDS FP1800 NC_009613.1 2042917 2043174 R hypothetical protein complement(2042917..2043174) Flavobacterium psychrophilum JIP02/86 5299499 YP_001296672.1 CDS FP1801 NC_009613.1 2043282 2044352 D hypothetical protein 2043282..2044352 Flavobacterium psychrophilum JIP02/86 5299500 YP_001296673.1 CDS yghO NC_009613.1 2044352 2045482 D Similar to protein of unknown function YghO of Escherichia coli; hypothetical protein 2044352..2045482 Flavobacterium psychrophilum JIP02/86 5299501 YP_001296674.1 CDS FP1803 NC_009613.1 2045551 2045646 D hypothetical protein 2045551..2045646 Flavobacterium psychrophilum JIP02/86 5299028 YP_001296675.1 CDS FP1804 NC_009613.1 2045792 2047051 R putative 8-amino-7-oxononanoate synthase complement(2045792..2047051) Flavobacterium psychrophilum JIP02/86 5299502 YP_001296676.1 CDS purB NC_009613.1 2047305 2048648 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(2047305..2048648) Flavobacterium psychrophilum JIP02/86 5299503 YP_001296677.1 CDS npdA NC_009613.1 2048736 2049428 R Modulates the activities of several enzymes which are inactive in their acetylated form (By similarity); NAD-dependent deacetylase complement(2048736..2049428) Flavobacterium psychrophilum JIP02/86 5298679 YP_001296678.1 CDS FP1807 NC_009613.1 2049577 2050230 D Similar to SpoU, rRNA methylases COG0566; tRNA/rRNA methyltransferase 2049577..2050230 Flavobacterium psychrophilum JIP02/86 5298854 YP_001296679.1 CDS FP1808 NC_009613.1 2050255 2050440 R Weakly similar to protein of unknown function; hypothetical protein complement(2050255..2050440) Flavobacterium psychrophilum JIP02/86 5299406 YP_001296680.1 CDS FP1809 NC_009613.1 2050456 2053680 R Resistance-Nodulation-Cell Division (RND) Superfamily. Probable transmembrane protein. TC 2.A.6.2.Z; multidrug resistance protein precursor AcrB/AcrD/AcrF family protein complement(2050456..2053680) Flavobacterium psychrophilum JIP02/86 5299407 YP_001296681.1 CDS FP1810 NC_009613.1 2053848 2054933 R Membrane Fusion Protein (MFP) Family. Probable lipoprotein. TC 8.A.1.Y.Z; membrane fusion efflux protein precursor complement(2053848..2054933) Flavobacterium psychrophilum JIP02/86 5299408 YP_001296682.1 CDS FP1811 NC_009613.1 2054936 2056249 R Outer Membrane Factor (OMF) Family. TC 1.B.17.Y.Z; outer membrane efflux protein precursor complement(2054936..2056249) Flavobacterium psychrophilum JIP02/86 5299409 YP_001296683.1 CDS FP1812 NC_009613.1 2057043 2057345 R Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein complement(2057043..2057345) Flavobacterium psychrophilum JIP02/86 5299410 YP_001296684.1 CDS FP1813 NC_009613.1 2057348 2057545 R Probable transmembrane protein; hypothetical protein complement(2057348..2057545) Flavobacterium psychrophilum JIP02/86 5299360 YP_001296685.1 CDS FP1814 NC_009613.1 2057548 2057907 R Similar to rhodanese-like domain protein function of Porphyromonas gingivalis; rhodanese-like domain-containing protein complement(2057548..2057907) Flavobacterium psychrophilum JIP02/86 5299361 YP_001296686.1 CDS FP1815 NC_009613.1 2057877 2059298 R N-terminal region similar to Similar to Zn- dependent hydrolases, including glyoxylases COG0491 and C- terminal region similar to rhodanese-related sulfurtransferase COG0607; metallo-beta-lactamase complement(2057877..2059298) Flavobacterium psychrophilum JIP02/86 5299362 YP_001296687.1 CDS FP1816 NC_009613.1 2059381 2060166 R Similar to protein of unknown function. Probable transmembrane protein; hypothetical protein complement(2059381..2060166) Flavobacterium psychrophilum JIP02/86 5299363 YP_001296688.1 CDS FP1817 NC_009613.1 2060184 2060936 R Some similarities with putative outer membrane protein, probably involved in nutrient binding of Bacteroidesthetaiotaomicron; hypothetical protein complement(2060184..2060936) Flavobacterium psychrophilum JIP02/86 5298931 YP_001296689.1 CDS FP1818 NC_009613.1 2061228 2063162 R Similar to superfamily II DNA and RNA helicases COG0513; DEAD-box ATP dependent DNA helicase complement(2061228..2063162) Flavobacterium psychrophilum JIP02/86 5298932 YP_001296690.1 CDS FP1819 NC_009613.1 2063263 2063835 R hydrolyzes non-standard nucleotides such as xanthine and inosine; putative deoxyribonucleoside-triphosphatase complement(2063263..2063835) Flavobacterium psychrophilum JIP02/86 5298933 YP_001296691.1 CDS guaB NC_009613.1 2063969 2065441 R GMP biosynthesis from IMP; first step (by similarity); IMP dehydrogenase complement(2063969..2065441) Flavobacterium psychrophilum JIP02/86 5298934 YP_001296692.1 CDS mvaB NC_009613.1 2066700 2067566 R hydroxymethylglutaryl-CoA lyase complement(2066700..2067566) Flavobacterium psychrophilum JIP02/86 5298938 YP_001296693.1 CDS pyrD NC_009613.1 2067589 2068641 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2067589..2068641) Flavobacterium psychrophilum JIP02/86 5300705 YP_001296694.1 CDS FP1823 NC_009613.1 2068964 2070148 D hypothetical protein 2068964..2070148 Flavobacterium psychrophilum JIP02/86 5300445 YP_001296695.1 CDS FP1824 NC_009613.1 2070689 2070919 D hypothetical protein 2070689..2070919 Flavobacterium psychrophilum JIP02/86 5298935 YP_001296696.1 CDS ytxJ NC_009613.1 2070974 2071360 R Start doubtful, the first ATG was choosen. Similarto ypothetical protein YtxJ of Bacillus subtilis; hypothetical protein complement(2070974..2071360) Flavobacterium psychrophilum JIP02/86 5299699 YP_001296697.1 CDS rprY NC_009613.1 2071423 2072124 R Member of the two-component regulatory system RprX/RprY (by similarity); two-component system response regulatory protein RprY complement(2071423..2072124) Flavobacterium psychrophilum JIP02/86 5299233 YP_001296698.1 CDS rprX NC_009613.1 2072128 2073711 R Member of the two-component regulatory system RprX/RprY. May activate RprY by phosphorylation (by similarity); two-component system sensor histidine kinase RprX complement(2072128..2073711) Flavobacterium psychrophilum JIP02/86 5300684 YP_001296699.1 CDS coaE NC_009613.1 2073780 2074364 R Coenzyme A (CoA) biosynthesis; fifth (last) step. Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A (By similarity); dephospho-CoA kinase complement(2073780..2074364) Flavobacterium psychrophilum JIP02/86 5300683 YP_001296700.1 CDS FP1829 NC_009613.1 2074366 2075364 R Similar to glycosyltransferases COG0463 COG1215 COG1216; glycosyl transferase, group 2 family protein complement(2074366..2075364) Flavobacterium psychrophilum JIP02/86 5298773 YP_001296701.1 CDS FP1830 NC_009613.1 2075452 2077695 R Putative adhesine; hypothetical protein complement(2075452..2077695) Flavobacterium psychrophilum JIP02/86 5299700 YP_001296702.1 CDS FP1833 NC_009613.1 2079364 2080281 R Purine and pyrimidine metabolism; 5'-nucleotidase complement(2079364..2080281) Flavobacterium psychrophilum JIP02/86 5299703 YP_001296703.1 CDS FP1834 NC_009613.1 2080319 2081098 R Some similarities with 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases COG0737; putative 2,3-cyclic phosphodiesterase complement(2080319..2081098) Flavobacterium psychrophilum JIP02/86 5298721 YP_001296704.1 CDS FP1835 NC_009613.1 2081156 2081674 D hypothetical protein 2081156..2081674 Flavobacterium psychrophilum JIP02/86 5298722 YP_001296705.1 CDS dapA NC_009613.1 2081679 2082560 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 2081679..2082560 Flavobacterium psychrophilum JIP02/86 5298723 YP_001296706.1 CDS FP1837 NC_009613.1 2082661 2083455 D Similar to putative lipoprotein of the CFB phylum; lipoprotein 2082661..2083455 Flavobacterium psychrophilum JIP02/86 5298533 YP_001296707.1 CDS FP1838 NC_009613.1 2083465 2083779 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2083465..2083779 Flavobacterium psychrophilum JIP02/86 5298724 YP_001296708.1 CDS FP1839 NC_009613.1 2083787 2084995 D Coenzyme A (CoA) biosynthesis; second and third steps (by similarity); bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC 2083787..2084995 Flavobacterium psychrophilum JIP02/86 5300450 YP_001296709.1 CDS FP1840 NC_009613.1 2084988 2085875 D Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein 2084988..2085875 Flavobacterium psychrophilum JIP02/86 5300451 YP_001296710.1 CDS recN NC_009613.1 2085885 2087537 D May be involved in recombinational repair of damaged DNA (by similarity); DNA repair protein recN 2085885..2087537 Flavobacterium psychrophilum JIP02/86 5300452 YP_001296711.1 CDS FP1842 NC_009613.1 2087625 2088815 D enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity; trans-2-enoyl-CoA reductase 2087625..2088815 Flavobacterium psychrophilum JIP02/86 5300212 YP_001296712.1 CDS FP1843 NC_009613.1 2088941 2089120 D hypothetical protein 2088941..2089120 Flavobacterium psychrophilum JIP02/86 5300453 YP_001296713.1 CDS FP1844 NC_009613.1 2089143 2089421 R hypothetical protein complement(2089143..2089421) Flavobacterium psychrophilum JIP02/86 5300454 YP_001296714.1 CDS FP1845 NC_009613.1 2089449 2089892 R Probable transmembrane protein; hypothetical protein complement(2089449..2089892) Flavobacterium psychrophilum JIP02/86 5299576 YP_001296715.1 CDS FP1846 NC_009613.1 2089882 2090577 R Probable transmembrane protein; hypothetical protein complement(2089882..2090577) Flavobacterium psychrophilum JIP02/86 5299577 YP_001296716.1 CDS ligA NC_009613.1 2090664 2092664 R This protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'- hydroxyl groupsin double-stranded DNA using NAD as a coenzyme and as theenergy source for the reaction. It is essential for DNA replication and repair of damaged DNA (by similarity); DNA ligase (NAD+) complement(2090664..2092664) Flavobacterium psychrophilum JIP02/86 5299578 YP_001296717.1 CDS FP1848 NC_009613.1 2092737 2093210 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2092737..2093210) Flavobacterium psychrophilum JIP02/86 5299292 YP_001296718.1 CDS rplI NC_009613.1 2093352 2093795 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2093352..2093795) Flavobacterium psychrophilum JIP02/86 5299579 YP_001296719.1 CDS rpsR NC_009613.1 2093861 2094157 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(2093861..2094157) Flavobacterium psychrophilum JIP02/86 5300815 YP_001296720.1 CDS rpsF NC_009613.1 2094163 2094504 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2094163..2094504) Flavobacterium psychrophilum JIP02/86 5298776 YP_001296721.1 CDS FP1852 NC_009613.1 2094673 2095365 D Similar to response regulator of the LytR/AlgR family COG3279; two-component system response regulatory protein 2094673..2095365 Flavobacterium psychrophilum JIP02/86 5300918 YP_001296722.1 CDS priA NC_009613.1 2095432 2097882 R Recognizes a specific hairpin sequence on phiX ssDNA. This structure is then recognized and bound by proteins priB and priC. Formation of the primosome proceeds with the subsequent actions of dnaB, dnaC, dnaT and primase. PriA then functions as a helicase within the primosome (by similarity); primosomal protein N' complement(2095432..2097882) Flavobacterium psychrophilum JIP02/86 5299580 YP_001296723.1 CDS FP1854 NC_009613.1 2098359 2098787 R Similar to uncharacterized protein conserved in bacteria COG4731; hypothetical protein complement(2098359..2098787) Flavobacterium psychrophilum JIP02/86 5299140 YP_001296724.1 CDS yfkH NC_009613.1 2098784 2099731 R Similar to YfkH protein (Ribonuclease BN) of Bacillus subtilis. Probable transmembrane protein; hypothetical protein complement(2098784..2099731) Flavobacterium psychrophilum JIP02/86 5300890 YP_001296725.1 CDS nadC NC_009613.1 2099747 2100604 R NAD biosynthesis; aspartate to NaMN; third (last) step (by similarity); nicotinate-nucleotide diphosphorylase (carboxylating) complement(2099747..2100604) Flavobacterium psychrophilum JIP02/86 5300964 YP_001296726.1 CDS hmp NC_009613.1 2100807 2102012 D Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress (By similarity); nitric oxide dioxygenase 2100807..2102012 Flavobacterium psychrophilum JIP02/86 5298947 YP_001296727.1 CDS yjeB NC_009613.1 2102020 2102439 D Similar to predicted transcriptional regulator COG1959; hypothetical protein 2102020..2102439 Flavobacterium psychrophilum JIP02/86 5298877 YP_001296728.1 CDS FP1859 NC_009613.1 2102441 2102656 D Probable transmembrane protein; hypothetical protein 2102441..2102656 Flavobacterium psychrophilum JIP02/86 5299146 YP_001296729.1 CDS yydA NC_009613.1 2102731 2103204 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2102731..2103204 Flavobacterium psychrophilum JIP02/86 5300891 YP_001296730.1 CDS FP1861 NC_009613.1 2103239 2104126 D Similar to predicted glycosyltransferases COG1216; glycosyl transferase, group 2 family protein 2103239..2104126 Flavobacterium psychrophilum JIP02/86 5300508 YP_001296731.1 CDS FP1862 NC_009613.1 2104127 2105053 D Similar to glycosyltransferases COG0463 COG1215 COG1216; glycosyl transferase, group 2 family protein 2104127..2105053 Flavobacterium psychrophilum JIP02/86 5300892 YP_001296732.1 CDS FP1863 NC_009613.1 2105024 2105443 R Similar to WcgF and WcgG of Bacteroides fragilis. Putative sugar isomerase; hypothetical protein complement(2105024..2105443) Flavobacterium psychrophilum JIP02/86 5300893 YP_001296733.1 CDS FP1864 NC_009613.1 2105444 2106541 R Similar to glycosyltransferase COG0438; glycosyl transferase, group 1 family protein complement(2105444..2106541) Flavobacterium psychrophilum JIP02/86 5300894 YP_001296734.1 CDS wbsE NC_009613.1 2106586 2107722 D Similar to putative glycosyl transferase WbsE of the Shiga toxin-producing Escherichia coli (STEC) O91; putative glycosyl transferase WbsE 2106586..2107722 Flavobacterium psychrophilum JIP02/86 5300316 YP_001296735.1 CDS relA NC_009613.1 2107905 2110124 R In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp (by similarity); GTP diphosphokinase complement(2107905..2110124) Flavobacterium psychrophilum JIP02/86 5300625 YP_001296736.1 CDS FP1867 NC_009613.1 2110350 2111138 R Similar to rRNA methylases COG0566; tRNA/rRNA methyltransferase complement(2110350..2111138) Flavobacterium psychrophilum JIP02/86 5300099 YP_001296737.1 CDS FP1868 NC_009613.1 2111432 2112037 D Similar to predicted membrane protein COG2860. Probable transmembrane protein; hypothetical protein 2111432..2112037 Flavobacterium psychrophilum JIP02/86 5300317 YP_001296738.1 CDS FP1869 NC_009613.1 2112262 2113239 D Similar to protein of unknown function of Xanthomonas axonopodis and Treponema denticola; hypothetical protein 2112262..2113239 Flavobacterium psychrophilum JIP02/86 5300318 YP_001296739.1 CDS FP1870 NC_009613.1 2113236 2114339 D Probable aminotransferase involved in cell wall biogenesis. Similar to WbtC protein of Escherichia coli O103; aminotransferase 2113236..2114339 Flavobacterium psychrophilum JIP02/86 5300319 YP_001296740.1 CDS wzxE NC_009613.1 2114340 2115614 D Probable lipopolysaccharide biosynthesis protein. Probable transmembrane protein; putative lipopolysaccharide biosynthesis protein WzxE 2114340..2115614 Flavobacterium psychrophilum JIP02/86 5299527 YP_001296741.1 CDS icd NC_009613.1 2115908 2117134 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2115908..2117134) Flavobacterium psychrophilum JIP02/86 5300620 YP_001296742.1 CDS rplS NC_009613.1 2117568 2117918 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2117568..2117918) Flavobacterium psychrophilum JIP02/86 5300098 YP_001296743.1 CDS trmD NC_009613.1 2118068 2118745 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(2118068..2118745) Flavobacterium psychrophilum JIP02/86 5300653 YP_001296744.1 CDS FP1876 NC_009613.1 2119676 2120443 R hypothetical protein complement(2119676..2120443) Flavobacterium psychrophilum JIP02/86 5299528 YP_001296745.1 CDS FP1877 NC_009613.1 2120495 2122696 R ABC transporter, permease and ATP-binding protein (IM-ABC), DPL-family, HLY-subfamily, drug export, TC 3.A.1.Y.Z; mtultidrug ABC transporter permease/ATPase complement(2120495..2122696) Flavobacterium psychrophilum JIP02/86 5299529 YP_001296746.1 CDS FP1878 NC_009613.1 2122702 2123631 R hypothetical protein complement(2122702..2123631) Flavobacterium psychrophilum JIP02/86 5299530 YP_001296747.1 CDS FP1879 NC_009613.1 2123639 2124991 R Similar to arylsulfatase regulator (Fe-S oxidoreductase) COG0641; hypothetical protein complement(2123639..2124991) Flavobacterium psychrophilum JIP02/86 5299531 YP_001296748.1 CDS FP1880 NC_009613.1 2125063 2125206 R Similar to hypothetical protein of Flavobacterium psychrophilum; hypothetical protein complement(2125063..2125206) Flavobacterium psychrophilum JIP02/86 5299350 YP_001296749.1 CDS FP1881 NC_009613.1 2125276 2125419 R Similar to hypothetical protein of Flavobacterium psychrophilum; hypothetical protein complement(2125276..2125419) Flavobacterium psychrophilum JIP02/86 5299351 YP_001296750.1 CDS FP1882 NC_009613.1 2125502 2127898 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(2125502..2127898) Flavobacterium psychrophilum JIP02/86 5299352 YP_001296751.1 CDS dcp2 NC_009613.1 2128350 2130482 D Start doubtful, the first ATG was choosen. Removesdipeptides from the C-termini of N-blocked tripeptides, tetrapeptides and larger peptides (by similarity); peptidyl-dipeptidase Dcp2 2128350..2130482 Flavobacterium psychrophilum JIP02/86 5299353 YP_001296752.1 CDS smpB NC_009613.1 2130825 2131277 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2130825..2131277) Flavobacterium psychrophilum JIP02/86 5300911 YP_001296753.1 CDS FP1885 NC_009613.1 2131342 2131566 D Similar to protein of unknown function and some similarities with uncharacterized conserved protein COG4628; hypothetical protein 2131342..2131566 Flavobacterium psychrophilum JIP02/86 5298530 YP_001296754.1 CDS FP1886 NC_009613.1 2131575 2132126 R Acetylation of N-terminal amino-acid of ribosomal protein; ribosomal-protein-amino-adic N-acetyltransferase complement(2131575..2132126) Flavobacterium psychrophilum JIP02/86 5299354 YP_001296755.1 CDS FP1887 NC_009613.1 2132388 2132669 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 2132388..2132669 Flavobacterium psychrophilum JIP02/86 5300509 YP_001296756.1 CDS FP1888 NC_009613.1 2132790 2135030 D Some similarities with aminopeptidase N COG0308; aminopeptidase precursor 2132790..2135030 Flavobacterium psychrophilum JIP02/86 5300510 YP_001296757.1 CDS FP1889 NC_009613.1 2135104 2135589 D Start doubtful, the first ATG was choosen. Contains phosphatidylinositol-specific phospholipase C, X domain; hypothetical protein 2135104..2135589 Flavobacterium psychrophilum JIP02/86 5300511 YP_001296758.1 CDS ppiB NC_009613.1 2135665 2136750 R Similar to PpiB protein of Flavobacterium johnsonae, a probable peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase PpiB complement(2135665..2136750) Flavobacterium psychrophilum JIP02/86 5300512 YP_001296759.1 CDS ppiA NC_009613.1 2136771 2137865 R Similar to PpiA protein of Flavobacterium johnsonae, a probable peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl cis-trans isomerase PpiA complement(2136771..2137865) Flavobacterium psychrophilum JIP02/86 5299203 YP_001296760.1 CDS gldI NC_009613.1 2137892 2138458 R In Flavobacterium johnsoniae, GldI is a lipoprotein that is required for gliding motility and chitin utilization; gliding motility lipoprotein GldI complement(2137892..2138458) Flavobacterium psychrophilum JIP02/86 5299202 YP_001296761.1 CDS FP1893 NC_009613.1 2138466 2139476 R Similar to Fjo19 protein of Flavobacterium johnsoniae and to exopolyphosphatase-related proteins COG0618; hypothetical protein complement(2138466..2139476) Flavobacterium psychrophilum JIP02/86 5298883 YP_001296762.1 CDS guaA NC_009613.1 2139569 2141098 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2139569..2141098 Flavobacterium psychrophilum JIP02/86 5300473 YP_001296763.1 CDS FP1895 NC_009613.1 2141233 2142939 D Similar to LysM domain protein of the CFB phylum; hypothetical protein 2141233..2142939 Flavobacterium psychrophilum JIP02/86 5298937 YP_001296764.1 CDS FP1896 NC_009613.1 2143158 2145074 D Similar to LysM domain protein of the CFB phylum; hypothetical protein 2143158..2145074 Flavobacterium psychrophilum JIP02/86 5300474 YP_001296765.1 CDS osmC NC_009613.1 2145074 2145478 D Similar to putative stress-induced protein OsmC; putative stress-induced protein OsmC 2145074..2145478 Flavobacterium psychrophilum JIP02/86 5300475 YP_001296766.1 CDS FP1898 NC_009613.1 2145558 2145788 D Similar to uncharacterized protein conserved in bacteria COG3530; hypothetical protein 2145558..2145788 Flavobacterium psychrophilum JIP02/86 5300161 YP_001296767.1 CDS pyrG NC_009613.1 2146494 2148107 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 2146494..2148107 Flavobacterium psychrophilum JIP02/86 5300476 YP_001296768.1 CDS oxaA NC_009613.1 2148201 2150102 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 2148201..2150102 Flavobacterium psychrophilum JIP02/86 5300448 YP_001296769.1 CDS FP1901 NC_009613.1 2150250 2151017 D Similar to uncharacterized protein conserved in bacteria COG2849; hypothetical protein 2150250..2151017 Flavobacterium psychrophilum JIP02/86 5300162 YP_001296770.1 CDS purA NC_009613.1 2151083 2152354 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2151083..2152354) Flavobacterium psychrophilum JIP02/86 5300477 YP_001296771.1 CDS fur NC_009613.1 2152435 2152887 R Transcriptional repressor of iron transport; ferric iron uptake transcription regulator, Fur complement(2152435..2152887) Flavobacterium psychrophilum JIP02/86 5298770 YP_001296772.1 CDS FP1904 NC_009613.1 2153407 2153874 R Probable exported protein; putative muramidase complement(2153407..2153874) Flavobacterium psychrophilum JIP02/86 5298510 YP_001296773.1 CDS FP1905 NC_009613.1 2153974 2155218 D Similar to putative periplasmic protein; hypothetical protein 2153974..2155218 Flavobacterium psychrophilum JIP02/86 5299624 YP_001296774.1 CDS FP1906 NC_009613.1 2155199 2156677 R Probable transmembrane protein similar to alginateo- acetyltransferase AlgI; sugar O-acetyltransferase precursor complement(2155199..2156677) Flavobacterium psychrophilum JIP02/86 5299718 YP_001296775.1 CDS FP1907 NC_009613.1 2156670 2158073 R Similar to putative periplasmic protein; hypothetical protein complement(2156670..2158073) Flavobacterium psychrophilum JIP02/86 5299719 YP_001296776.1 CDS ppiC NC_009613.1 2158657 2159589 R PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; peptidyl-prolyl cis-trans isomerase PpiC complement(2158657..2159589) Flavobacterium psychrophilum JIP02/86 5299720 YP_001296777.1 CDS pcm NC_009613.1 2159865 2160506 R Catalyzes the methyl esterification of L- isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L- asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. This enzyme does not act on D-aspartyl residues (by similarity); protein-L-isoaspartate(D-aspartate)O-methyltrans ferase complement(2159865..2160506) Flavobacterium psychrophilum JIP02/86 5299721 YP_001296778.1 CDS FP1910 NC_009613.1 2160605 2161570 D Similar to predicted dehydrogenases and related proteins COG0673; Gfo/Idh/MocA family oxidoreductase 2160605..2161570 Flavobacterium psychrophilum JIP02/86 5299204 YP_001296779.1 CDS FP1911 NC_009613.1 2161597 2162484 D 3-hydroxyacyl-CoA dehydrogenase family protein 2161597..2162484 Flavobacterium psychrophilum JIP02/86 5298615 YP_001296780.1 CDS FP1912 NC_009613.1 2162514 2163746 D Similar to uncharacterized conserved protein; hypothetical protein 2162514..2163746 Flavobacterium psychrophilum JIP02/86 5299722 YP_001296781.1 CDS FP1913 NC_009613.1 2163831 2164490 D Similar to predicted enzyme with a TIM-barrel foldCOG0325; hypothetical protein 2163831..2164490 Flavobacterium psychrophilum JIP02/86 5299192 YP_001296782.1 CDS FP1914 NC_009613.1 2164523 2164891 D Similar to protein of unknown function of Chlorobium phaeobacteroides and Nostoc sp.; hypothetical protein 2164523..2164891 Flavobacterium psychrophilum JIP02/86 5299193 YP_001296783.1 CDS FP1915 NC_009613.1 2165004 2166365 D N-terminal region similar to DNA polymerase III, epsilon subunit and related 3'-5' exonucleases COG0847 and C-terminal region similar to nuclease subunit of the excinuclease complex COG0322; DNA polymerase III subunit 2165004..2166365 Flavobacterium psychrophilum JIP02/86 5299194 YP_001296784.1 CDS miaA NC_009613.1 2166508 2167431 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2166508..2167431 Flavobacterium psychrophilum JIP02/86 5299195 YP_001296785.1 CDS FP1917 NC_009613.1 2167480 2167626 D hypothetical protein 2167480..2167626 Flavobacterium psychrophilum JIP02/86 5299196 YP_001296786.1 CDS FP1918 NC_009613.1 2167742 2168671 D hypothetical protein 2167742..2168671 Flavobacterium psychrophilum JIP02/86 5299522 YP_001296787.1 CDS pepT NC_009613.1 2168892 2170166 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 2168892..2170166 Flavobacterium psychrophilum JIP02/86 5300368 YP_001296788.1 CDS FP1920 NC_009613.1 2170680 2172812 R C-terminal region similar to Outer membrane protein A (OmpA); OmpA family outer membrane protein complement(2170680..2172812) Flavobacterium psychrophilum JIP02/86 5300369 YP_001296789.1 CDS prfA NC_009613.1 2172942 2174015 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(2172942..2174015) Flavobacterium psychrophilum JIP02/86 5300484 YP_001296790.1 CDS fhuA NC_009613.1 2174758 2177013 D This receptor binds the ferrichrome-iron ligand. It interacts with the TonB protein, which is responsible for energy coupling of the ferrichrome-promoted iron transport system (by similarity); TonB-dependent outer membrane ferrichrome-iron receptor precursor FhuA 2174758..2177013 Flavobacterium psychrophilum JIP02/86 5300370 YP_001296791.1 CDS FP1923 NC_009613.1 2177019 2177567 D Similar to uncharacterized protein conserved in bacteria COG3295. Probable transmembrane protein; hypothetical protein 2177019..2177567 Flavobacterium psychrophilum JIP02/86 5299102 YP_001296792.1 CDS FP1924 NC_009613.1 2177985 2178863 R Probable exported protein; hypothetical protein complement(2177985..2178863) Flavobacterium psychrophilum JIP02/86 5299200 YP_001296793.1 CDS FP1925 NC_009613.1 2179040 2180266 R Similar to glutamate dehydrogenase/leucine dehydrogenase COG0334; Glu/Leu/Phe/Val dehydrogenase family protein complement(2179040..2180266) Flavobacterium psychrophilum JIP02/86 5300371 YP_001296794.1 CDS FP1926 NC_009613.1 2180426 2181007 R Similar to protein of unknown function; hypothetical protein complement(2180426..2181007) Flavobacterium psychrophilum JIP02/86 5299883 YP_001296795.1 CDS anmK NC_009613.1 2181093 2182160 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(2181093..2182160) Flavobacterium psychrophilum JIP02/86 5299884 YP_001296796.1 CDS FP1928 NC_009613.1 2182256 2183395 D Acyl-CoA dehydrogenase family protein 2182256..2183395 Flavobacterium psychrophilum JIP02/86 5299885 YP_001296797.1 CDS pepD NC_009613.1 2183950 2185413 R This dipeptidase has specificity for the unusual dipeptide beta-alanyl-L-histidine (by similarity); Xaa-His dipeptidase complement(2183950..2185413) Flavobacterium psychrophilum JIP02/86 5299886 YP_001296798.1 CDS FP1930 NC_009613.1 2185512 2186567 D Probable transmembrane protein, similar to proteinof unknown function of Clostridium thermocellum, Bacillusclausii and Bacteroides sp.; hypothetical protein 2185512..2186567 Flavobacterium psychrophilum JIP02/86 5299506 YP_001296799.1 CDS ndh NC_009613.1 2186564 2187868 R Transfer of electrons from NADH to the respiratorychain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Does not couple the redox reaction to proton translocation (by similarity); NADH dehydrogenase complement(2186564..2187868) Flavobacterium psychrophilum JIP02/86 5299656 YP_001296800.1 CDS FP1932 NC_009613.1 2188083 2188577 D Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor 2188083..2188577 Flavobacterium psychrophilum JIP02/86 5300194 YP_001296801.1 CDS FP1933 NC_009613.1 2188591 2189199 D Probable transmembrane protein; hypothetical protein 2188591..2189199 Flavobacterium psychrophilum JIP02/86 5299657 YP_001296802.1 CDS FP1934 NC_009613.1 2189205 2190020 R Probable phospholipid/glycerol acyltransferase; acyltransferase complement(2189205..2190020) Flavobacterium psychrophilum JIP02/86 5299658 YP_001296803.1 CDS FP1935 NC_009613.1 2190066 2190704 R MutT/nudix family protein; pyrophosphohydrolase complement(2190066..2190704) Flavobacterium psychrophilum JIP02/86 5299659 YP_001296804.1 CDS FP1936 NC_009613.1 2190905 2191336 D hypothetical protein 2190905..2191336 Flavobacterium psychrophilum JIP02/86 5299660 YP_001296805.1 CDS FP1937 NC_009613.1 2191502 2192224 R Similar to protein of unknown function; hypothetical protein complement(2191502..2192224) Flavobacterium psychrophilum JIP02/86 5299606 YP_001296806.1 CDS FP1938 NC_009613.1 2192632 2192949 R Similar to protein of unknown function of Bacteroides fragilis. Weakly similar to plasmid stabilization system protein ParE; hypothetical protein complement(2192632..2192949) Flavobacterium psychrophilum JIP02/86 5299607 YP_001296807.1 CDS FP1939 NC_009613.1 2192949 2193188 R hypothetical protein complement(2192949..2193188) Flavobacterium psychrophilum JIP02/86 5299608 YP_001296808.1 CDS FP1940 NC_009613.1 2193536 2196964 D Catalyzes the isomerization of succinyl-CoA to methylmalonyl-CoA during synthesis of propionate from tricarboxylic acid-cycle intermediates (by similarity); methylmalonyl-CoA mutase 2193536..2196964 Flavobacterium psychrophilum JIP02/86 5299609 YP_001296809.1 CDS alaS NC_009613.1 2197279 2199942 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2197279..2199942) Flavobacterium psychrophilum JIP02/86 5299610 YP_001296810.1 CDS FP1942 NC_009613.1 2200273 2201250 D Similar to putative transmembrane peptidase of Bacteroides; secreted M23/M37 family peptidase 2200273..2201250 Flavobacterium psychrophilum JIP02/86 5299221 YP_001296811.1 CDS FP1943 NC_009613.1 2201250 2201582 D Similar to predicted transcriptional regulators COG0789; MerR family transcriptional regulator 2201250..2201582 Flavobacterium psychrophilum JIP02/86 5300774 YP_001296812.1 CDS FP1944 NC_009613.1 2201631 2202218 D Probable transmembrane protein. The exact molecular function of this protein is uncertain (by similarity); LemA family protein 2201631..2202218 Flavobacterium psychrophilum JIP02/86 5300775 YP_001296813.1 CDS FP1945 NC_009613.1 2202297 2202734 D Similar to protein of unknown function DUF477; hypothetical protein 2202297..2202734 Flavobacterium psychrophilum JIP02/86 5300776 YP_001296814.1 CDS FP1946 NC_009613.1 2202734 2203531 D Similar to beta-propeller domains of methanol dehydrogenase type COG1512. Probable transmembrane protein; hypothetical protein 2202734..2203531 Flavobacterium psychrophilum JIP02/86 5300777 YP_001296815.1 CDS FP1947 NC_009613.1 2203856 2204830 D Similar to protein of unknown function of Photorhabdus luminescens; hypothetical protein 2203856..2204830 Flavobacterium psychrophilum JIP02/86 5298641 YP_001296816.1 CDS FP1948 NC_009613.1 2204817 2205044 D Similar to protein of unknown function of Photorhabdus luminescens and Mycoplasma mycoides subsp. mycoides SC. Probable transmembrane protein; hypothetical protein 2204817..2205044 Flavobacterium psychrophilum JIP02/86 5298642 YP_001296817.1 CDS FP1949 NC_009613.1 2205035 2206774 D Similar to uncharacterized protein conserved in bacteria COG5293; hypothetical protein 2205035..2206774 Flavobacterium psychrophilum JIP02/86 5298643 YP_001296818.1 CDS FP1950 NC_009613.1 2206990 2208744 R ABC transporter, permease and ATP-binding protein (IM-ABC), DPL-family, drug export, TC 3.A.1.Y.Z; mtultidrug ABC transporter permease/ATPase complement(2206990..2208744) Flavobacterium psychrophilum JIP02/86 5298644 YP_001296819.1 CDS FP1951 NC_009613.1 2209067 2209639 D hypothetical protein 2209067..2209639 Flavobacterium psychrophilum JIP02/86 5298645 YP_001296820.1 CDS FP1952 NC_009613.1 2209739 2210689 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2209739..2210689 Flavobacterium psychrophilum JIP02/86 5298974 YP_001296821.1 CDS FP1953 NC_009613.1 2210692 2211312 D Probable exported protein; hypothetical protein 2210692..2211312 Flavobacterium psychrophilum JIP02/86 5298975 YP_001296822.1 CDS phhA NC_009613.1 2211316 2213070 R phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin; phenylalanine 4-monooxygenase complement(2211316..2213070) Flavobacterium psychrophilum JIP02/86 5298976 YP_001296823.1 CDS FP1955 NC_009613.1 2213187 2213717 R Similar to putative lipoproteins; lipoprotein precursor complement(2213187..2213717) Flavobacterium psychrophilum JIP02/86 5300302 YP_001296824.1 CDS FP1956 NC_009613.1 2213754 2214857 R hypothetical protein complement(2213754..2214857) Flavobacterium psychrophilum JIP02/86 5298977 YP_001296825.1 CDS hutU NC_009613.1 2215027 2217009 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(2215027..2217009) Flavobacterium psychrophilum JIP02/86 5298978 YP_001296826.1 CDS FP1958 NC_009613.1 2217506 2217832 D Similar to protein of unknown function of Cytophaga hutchinsonii and Bacteroides fragilis; hypothetical protein 2217506..2217832 Flavobacterium psychrophilum JIP02/86 5300095 YP_001296827.1 CDS FP1959 NC_009613.1 2217995 2221348 R Similar to protein of unknown function of Cytophaga hutchinsonii. Probable exported protein; hypothetical protein complement(2217995..2221348) Flavobacterium psychrophilum JIP02/86 5298665 YP_001296828.1 CDS FP1960 NC_009613.1 2221535 2222101 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2221535..2222101) Flavobacterium psychrophilum JIP02/86 5298666 YP_001296829.1 CDS engA NC_009613.1 2222431 2223741 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2222431..2223741) Flavobacterium psychrophilum JIP02/86 5298667 YP_001296830.1 CDS era NC_009613.1 2223950 2224831 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2223950..2224831) Flavobacterium psychrophilum JIP02/86 5300874 YP_001296831.1 CDS FP1965 NC_009613.1 2225845 2226291 D Similar to DnaJ-class molecular chaperone with C- terminal Zn finger domain of Cytophaga hutchinsonii; DnaJ-class molecular chaperone 2225845..2226291 Flavobacterium psychrophilum JIP02/86 5300009 YP_001296832.1 CDS FP1966 NC_009613.1 2226632 2227786 D Similar to protein of unknown function of Xylella fastidiosa; hypothetical protein 2226632..2227786 Flavobacterium psychrophilum JIP02/86 5298668 YP_001296833.1 CDS FP1967 NC_009613.1 2228069 2229979 R ABC2 type, ART family, REG subfamily protein, probably involved in regulation of translation initiation; translation intitiation regulation protein complement(2228069..2229979) Flavobacterium psychrophilum JIP02/86 5298669 YP_001296834.1 CDS FP1968 NC_009613.1 2230050 2230478 D Start doubtful. Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 2230050..2230478 Flavobacterium psychrophilum JIP02/86 5299394 YP_001296835.1 CDS FP1969 NC_009613.1 2230626 2231672 R Similar to Fjo30 protein of Flavobacterium johnsoniae; glycine/D-amino acid oxidases (deaminating) family protein complement(2230626..2231672) Flavobacterium psychrophilum JIP02/86 5299395 YP_001296836.1 CDS gldN NC_009613.1 2231739 2232743 R Highly similar to gliding motility protein GldN ofFlavobacterium johnsoniae, a probable periplasmic protein; gliding motility protein GldN complement(2231739..2232743) Flavobacterium psychrophilum JIP02/86 5299396 YP_001296837.1 CDS gldM NC_009613.1 2232793 2234322 R Highly similar to gliding motility protein GldM ofFlavobacterium johnsoniae, a probable periplasmic protein; gliding motility protein GldM complement(2232793..2234322) Flavobacterium psychrophilum JIP02/86 5300240 YP_001296838.1 CDS gldL NC_009613.1 2234370 2235020 R Highly similar to gliding motility protein GldL ofFlavobacterium johnsoniae; gliding motility protein GldL complement(2234370..2235020) Flavobacterium psychrophilum JIP02/86 5298887 YP_001296839.1 CDS gldK NC_009613.1 2235071 2236465 R Highly similar to gliding motility protein GldK ofFlavobacterium johnsoniae, a probable lipoprotein; gliding motility protein GldK complement(2235071..2236465) Flavobacterium psychrophilum JIP02/86 5298886 YP_001296840.1 CDS FP1974 NC_009613.1 2236609 2237754 R Similar to Fjo29 protein of Flavobacterium johnsoniae. Weakly similar to arginase/agmatinase/formimionoglutamate hydrolase, arginase family protein; hypothetical protein complement(2236609..2237754) Flavobacterium psychrophilum JIP02/86 5298885 YP_001296841.1 CDS topA NC_009613.1 2237758 2240274 R The reaction catalyzed by topoisomerases leads to the conversion of one topological isomer of DNA to another; DNA topoisomerase I complement(2237758..2240274) Flavobacterium psychrophilum JIP02/86 5299397 YP_001296842.1 CDS FP1976 NC_009613.1 2240795 2241607 D Weakly similar to protein of unknown function; hypothetical protein 2240795..2241607 Flavobacterium psychrophilum JIP02/86 5299337 YP_001296843.1 CDS FP1977 NC_009613.1 2241651 2242229 D Similar to protein of unknown function; hypothetical protein 2241651..2242229 Flavobacterium psychrophilum JIP02/86 5298575 YP_001296844.1 CDS FP1978 NC_009613.1 2242260 2242682 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable exported protein; hypothetical protein 2242260..2242682 Flavobacterium psychrophilum JIP02/86 5298576 YP_001296845.1 CDS FP1979 NC_009613.1 2243019 2244464 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2243019..2244464 Flavobacterium psychrophilum JIP02/86 5298577 YP_001296846.1 CDS FP1980 NC_009613.1 2244950 2246206 D Similar to transcriptional regulator of the CFB phylum; sigma-54-dependent transcriptional regulator 2244950..2246206 Flavobacterium psychrophilum JIP02/86 5298578 YP_001296847.1 CDS FP1981 NC_009613.1 2246281 2246784 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2246281..2246784 Flavobacterium psychrophilum JIP02/86 5298579 YP_001296848.1 CDS FP1982 NC_009613.1 2246884 2247726 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2246884..2247726 Flavobacterium psychrophilum JIP02/86 5298817 YP_001296849.1 CDS secG NC_009613.1 2247730 2248104 D Involved in protein export. Participates in an early event of protein translocation (by similarity); preprotein translocase SecG subunit 2247730..2248104 Flavobacterium psychrophilum JIP02/86 5298818 YP_001296850.1 CDS groES NC_009613.1 2248244 2248519 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2248244..2248519 Flavobacterium psychrophilum JIP02/86 5299832 YP_001296851.1 CDS groEL NC_009613.1 2248957 2250585 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2248957..2250585 Flavobacterium psychrophilum JIP02/86 5299331 YP_001296852.1 CDS FP1986 NC_009613.1 2251152 2251667 R Probable transmembrane protein; hypothetical protein complement(2251152..2251667) Flavobacterium psychrophilum JIP02/86 5299330 YP_001296853.1 CDS rpmH NC_009613.1 2251822 2251983 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 2251822..2251983 Flavobacterium psychrophilum JIP02/86 5298819 YP_001296854.1 CDS carB NC_009613.1 2252217 2255069 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2252217..2255069 Flavobacterium psychrophilum JIP02/86 5299372 YP_001296855.1 CDS irk NC_009613.1 2255130 2256086 D Inward rectifier potassium channels are characterized by a greater tendancy to allow potassium to flow into the cell rather than out of it (by similarity); inward rectifier potassium channel Irk 2255130..2256086 Flavobacterium psychrophilum JIP02/86 5300200 YP_001296856.1 CDS FP1990 NC_009613.1 2256097 2256642 R Similar to acyl-CoA hydrolase COG1607; Acyl-CoA hydrolase family protein complement(2256097..2256642) Flavobacterium psychrophilum JIP02/86 5298927 YP_001296857.1 CDS FP1991 NC_009613.1 2256643 2257011 R Similar to protein of unknown function of Cytophaga hutchinsonii and Geobacter metallireducens. Probable exported protein; hypothetical protein complement(2256643..2257011) Flavobacterium psychrophilum JIP02/86 5298820 YP_001296858.1 CDS rmuC NC_009613.1 2257019 2258365 R Involved in DNA recombination (By similarity); DNA recombination protein RmuC complement(2257019..2258365) Flavobacterium psychrophilum JIP02/86 5298821 YP_001296859.1 CDS FP1993 NC_009613.1 2258430 2259050 D Similar to 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases COG1187; pseudouridylate synthase 2258430..2259050 Flavobacterium psychrophilum JIP02/86 5299739 YP_001296860.1 CDS FP1994 NC_009613.1 2259057 2259512 D Similar to predicted rRNA methylase (SpoU class) COG0219; rRNA methyltransferase 2259057..2259512 Flavobacterium psychrophilum JIP02/86 5298550 YP_001296861.1 CDS FP1995 NC_009613.1 2259532 2260314 R ABC transporter, ATP-binding protein (ABC), ISVH- family, iron(III) import (putative), TC 3.A.1.14. Z; iron ABC transporter ATPase complement(2259532..2260314) Flavobacterium psychrophilum JIP02/86 5298551 YP_001296862.1 CDS murB NC_009613.1 2260332 2261345 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2260332..2261345) Flavobacterium psychrophilum JIP02/86 5298552 YP_001296863.1 CDS asnB NC_009613.1 2261533 2263380 R Asparagine biosynthesis; glutamine-hydrolyzing asparagine synthetase complement(2261533..2263380) Flavobacterium psychrophilum JIP02/86 5299889 YP_001296864.1 CDS FP1998 NC_009613.1 2263384 2264445 R Similar to glycosyltransferases COG0438; glycosyl transferase, group 1 family protein complement(2263384..2264445) Flavobacterium psychrophilum JIP02/86 5298917 YP_001296865.1 CDS FP1999 NC_009613.1 2264455 2265129 R Similar to uncharacterized conserved protein COG5587; hypothetical protein complement(2264455..2265129) Flavobacterium psychrophilum JIP02/86 5298553 YP_001296866.1 CDS FP2000 NC_009613.1 2265131 2265823 R N-terminal region similar to rhodanese-related sulfurtransferase COG0607 and C-terminal region similar to thioredoxins; thioredoxin family protein complement(2265131..2265823) Flavobacterium psychrophilum JIP02/86 5298554 YP_001296867.1 CDS recF NC_009613.1 2265850 2266929 R The recF protein is involved in DNA metabolism; itis required for DNA replication and normal SOS inducibility. RecF binds preferentially to single- stranded, linear DNA. It also seems to bind ATP (by similarity); DNA replication and repair protein RecF complement(2265850..2266929) Flavobacterium psychrophilum JIP02/86 5299302 YP_001296868.1 CDS FP2002 NC_009613.1 2267215 2268006 D Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein. Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein 2267215..2268006 Flavobacterium psychrophilum JIP02/86 5299381 YP_001296869.1 CDS ribH NC_009613.1 2268077 2268646 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2268077..2268646 Flavobacterium psychrophilum JIP02/86 5299303 YP_001296870.1 CDS FP2005 NC_009613.1 2269172 2269564 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2269172..2269564 Flavobacterium psychrophilum JIP02/86 5300010 YP_001296871.1 CDS FP2006 NC_009613.1 2269619 2270413 D Similar to branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase COG0115; branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase family protein 2269619..2270413 Flavobacterium psychrophilum JIP02/86 5299304 YP_001296872.1 CDS FP2007 NC_009613.1 2270410 2270970 R Similar to putative transcriptional regulator COG1678; putative transcriptional regulator complement(2270410..2270970) Flavobacterium psychrophilum JIP02/86 5299305 YP_001296873.1 CDS hupB NC_009613.1 2271087 2271362 R Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions (by similarity); histone-like DNA-binding protein HU-beta complement(2271087..2271362) Flavobacterium psychrophilum JIP02/86 5298831 YP_001296874.1 CDS fmt NC_009613.1 2271529 2272479 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(2271529..2272479) Flavobacterium psychrophilum JIP02/86 5299009 YP_001296875.1 CDS recQ2 NC_009613.1 2272563 2274455 R Involved in the recF recombination pathway; its gene expression is under the regulation of the SOS system. It is a DNA helicase (by similarity); ATP-dependent DNA helicase RecQ2 complement(2272563..2274455) Flavobacterium psychrophilum JIP02/86 5300012 YP_001296876.1 CDS FP2011 NC_009613.1 2274500 2275033 R Similar to predicted ATPase COG3911; hypothetical protein complement(2274500..2275033) Flavobacterium psychrophilum JIP02/86 5300215 YP_001296877.1 CDS FP2012 NC_009613.1 2275479 2275763 D hypothetical protein 2275479..2275763 Flavobacterium psychrophilum JIP02/86 5298832 YP_001296878.1 CDS FP2013 NC_009613.1 2275766 2276482 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2275766..2276482 Flavobacterium psychrophilum JIP02/86 5298833 YP_001296879.1 CDS murA NC_009613.1 2276562 2277869 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2276562..2277869 Flavobacterium psychrophilum JIP02/86 5298834 YP_001296880.1 CDS FP2015 NC_009613.1 2278209 2279096 R Catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N- acetylglucosamine (GlcNAc); membrane-bound lytic murein transglycosylase precursor complement(2278209..2279096) Flavobacterium psychrophilum JIP02/86 5299888 YP_001296881.1 CDS FP2016 NC_009613.1 2279271 2279939 R Weakly similar to predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) COG0596; hypothetical protein complement(2279271..2279939) Flavobacterium psychrophilum JIP02/86 5298835 YP_001296882.1 CDS FP2017 NC_009613.1 2280244 2282709 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2280244..2282709) Flavobacterium psychrophilum JIP02/86 5299601 YP_001296883.1 CDS aroQ NC_009613.1 2283060 2283473 R Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and PEP: step 3 (by similarity); 3-dehydroquinate dehydratase complement(2283060..2283473) Flavobacterium psychrophilum JIP02/86 5299602 YP_001296884.1 CDS fspA NC_009613.1 2283984 2284595 D Flavo-specific protein antigen FspA precursor 2283984..2284595 Flavobacterium psychrophilum JIP02/86 5300719 YP_001296885.1 CDS xerD NC_009613.1 2284685 2285584 D Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convertdimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids (By similarity); tyrosine recombinase XerD 2284685..2285584 Flavobacterium psychrophilum JIP02/86 5300258 YP_001296886.1 CDS hisS NC_009613.1 2285681 2287099 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(2285681..2287099) Flavobacterium psychrophilum JIP02/86 5300622 YP_001296887.1 CDS FP2022 NC_009613.1 2287366 2288607 D ABC transporter, permease (IM), o228-family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease 2287366..2288607 Flavobacterium psychrophilum JIP02/86 5298874 YP_001296888.1 CDS hemK NC_009613.1 2288644 2289501 R Methylates the translation termination release factor RF1 on Gln-235 and RF2 on Gln-252 (by similarity); methylase of polypeptide chain release factors complement(2288644..2289501) Flavobacterium psychrophilum JIP02/86 5299603 YP_001296889.1 CDS yjgM NC_009613.1 2289504 2289998 R Similar to hypothetical acetyltransferase YjgM of E. coli; acetyltransferase YjgM complement(2289504..2289998) Flavobacterium psychrophilum JIP02/86 5300526 YP_001296890.1 CDS ribD NC_009613.1 2290054 2291061 D Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase involved in riboflavin biosynthesis; second and third step; riboflavin biosynthesis protein RibD 2290054..2291061 Flavobacterium psychrophilum JIP02/86 5299148 YP_001296891.1 CDS FP2026 NC_009613.1 2291054 2291665 D Similar to predicted hydrolase (HAD superfamily) COG1011; HAD superfamily hydrolase 2291054..2291665 Flavobacterium psychrophilum JIP02/86 5299297 YP_001296892.1 CDS FP2027 NC_009613.1 2291742 2292356 D Similar to uncharacterized conserved protein COG1739; hypothetical protein 2291742..2292356 Flavobacterium psychrophilum JIP02/86 5299604 YP_001296893.1 CDS FP2028 NC_009613.1 2292387 2293079 R Similar to uncharacterized membrane-associated protein, DedA family COG0586. Probable transmembrane protein; hypothetical protein complement(2292387..2293079) Flavobacterium psychrophilum JIP02/86 5299605 YP_001296894.1 CDS cynT NC_009613.1 2293165 2293800 R Reversible hydration of carbon dioxide; carbonic anhydrase complement(2293165..2293800) Flavobacterium psychrophilum JIP02/86 5299552 YP_001296895.1 CDS sulP NC_009613.1 2293823 2295307 R Sulfate permease (SulP) Family. TC 2.A.53.Y.Z; sulfate permease complement(2293823..2295307) Flavobacterium psychrophilum JIP02/86 5300936 YP_001296896.1 CDS FP2031 NC_009613.1 2295490 2295780 R hypothetical protein complement(2295490..2295780) Flavobacterium psychrophilum JIP02/86 5300634 YP_001296897.1 CDS FP2032 NC_009613.1 2295871 2296212 R Similar to putative cation transport ATPase of Cytophaga hutchinsonii; hypothetical protein complement(2295871..2296212) Flavobacterium psychrophilum JIP02/86 5299553 YP_001296898.1 CDS FP2033 NC_009613.1 2296252 2298258 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(2296252..2298258) Flavobacterium psychrophilum JIP02/86 5299554 YP_001296899.1 CDS FP2034 NC_009613.1 2298311 2298676 R hypothetical protein complement(2298311..2298676) Flavobacterium psychrophilum JIP02/86 5299555 YP_001296900.1 CDS FP2035 NC_009613.1 2298766 2299206 R Probable transmembrane protein; hypothetical protein complement(2298766..2299206) Flavobacterium psychrophilum JIP02/86 5299556 YP_001296901.1 CDS FP2036 NC_009613.1 2299184 2299723 R Probable transmembrane protein; hypothetical protein complement(2299184..2299723) Flavobacterium psychrophilum JIP02/86 5300493 YP_001296902.1 CDS FP2037 NC_009613.1 2299797 2300252 D Similar to GAF domain-containing proteins COG1956; hypothetical protein 2299797..2300252 Flavobacterium psychrophilum JIP02/86 5300494 YP_001296903.1 CDS FP2038 NC_009613.1 2300391 2300681 D Similar to protein of unknown function; hypothetical protein 2300391..2300681 Flavobacterium psychrophilum JIP02/86 5300495 YP_001296904.1 CDS FP2039 NC_009613.1 2300702 2301121 D Some similarities with eukaryotic proteins of unknown function; hypothetical protein 2300702..2301121 Flavobacterium psychrophilum JIP02/86 5300496 YP_001296905.1 CDS FP2040 NC_009613.1 2301162 2301791 D Similar to conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family COG1853; hypothetical protein 2301162..2301791 Flavobacterium psychrophilum JIP02/86 5300081 YP_001296906.1 CDS phrB2 NC_009613.1 2301803 2303311 D This enzyme catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand, upon exposure to ultraviolet radiation; deoxyribodipyrimidine photolyase PhrB2 2301803..2303311 Flavobacterium psychrophilum JIP02/86 5300082 YP_001296907.1 CDS FP2042 NC_009613.1 2303389 2304951 D Similar to uncharacterized protein related to deoxyribodipyrimidine photolyase COG3046; hypothetical protein 2303389..2304951 Flavobacterium psychrophilum JIP02/86 5299545 YP_001296908.1 CDS phrB3 NC_009613.1 2304948 2306240 D This enzyme catalyzes the light-dependent monomerization (300-600 nm) of cyclobutyl pyrimidine dimers (in cis-syn configuration), which are formed between adjacent bases on the same DNA strand, upon exposure to ultraviolet radiation; deoxyribodipyrimidine photolyase PhrB3 2304948..2306240 Flavobacterium psychrophilum JIP02/86 5300083 YP_001296909.1 CDS FP2044 NC_009613.1 2306258 2307685 D Some similarities with predicted nucleoside- diphosphate-sugar epimerases COG0702; nucleoside-diphosphate-sugar epimerase 2306258..2307685 Flavobacterium psychrophilum JIP02/86 5299546 YP_001296910.1 CDS rpsO NC_009613.1 2307783 2308049 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2307783..2308049 Flavobacterium psychrophilum JIP02/86 5300084 YP_001296911.1 CDS pnp NC_009613.1 2308279 2310414 D Involved in mRNA degradation. Hydrolyzes single- stranded polyribonucleotides processively in the 3' to 5' direction. Involved in the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation (by similarity); polynucleotide phosphorylase/polyadenylase 2308279..2310414 Flavobacterium psychrophilum JIP02/86 5300252 YP_001296912.1 CDS FP2047 NC_009613.1 2310501 2311085 R hypothetical protein complement(2310501..2311085) Flavobacterium psychrophilum JIP02/86 5299461 YP_001296913.1 CDS rpoD NC_009613.1 2311213 2312076 D Belongs to the sigma-70 factor family; RNA polymerase sigma-70 factor RpoD 2311213..2312076 Flavobacterium psychrophilum JIP02/86 5300085 YP_001296914.1 CDS rpe NC_009613.1 2312569 2313228 D ribulose-phosphate 3-epimerase 2312569..2313228 Flavobacterium psychrophilum JIP02/86 5300444 YP_001296915.1 CDS FP2050 NC_009613.1 2313217 2314035 R Similar to uncharacterized protein conserved in bacteria COG3228. Probable exported protein; hypothetical protein complement(2313217..2314035) Flavobacterium psychrophilum JIP02/86 5300921 YP_001296916.1 CDS FP2052 NC_009613.1 2314206 2314655 R Similar to uncharacterized protein conserved in bacteria COG1610; hypothetical protein complement(2314206..2314655) Flavobacterium psychrophilum JIP02/86 5299751 YP_001296917.1 CDS ftsZ NC_009613.1 2314986 2316971 R This protein is essential to the cell-division process. It seems to assemble into a dynamic ring on the inner surface of the cytoplasmic membrane at the place where division will occur, and the formation of the ring is the signal for septation to begin. Binds to and hydrolyzes GTP (by similarity); cell division protein FtsZ complement(2314986..2316971) Flavobacterium psychrophilum JIP02/86 5300289 YP_001296918.1 CDS ftsA NC_009613.1 2317018 2318418 R This protein may be involved in anomalous filamentgrowth. May be a component of the septum. It may interactwith ftsZ (By similarity); cell division protein FtsA complement(2317018..2318418) Flavobacterium psychrophilum JIP02/86 5298508 YP_001296919.1 CDS ftsQ NC_009613.1 2318420 2319142 R This protein may be involved in septum formation; cell division protein FtsQ complement(2318420..2319142) Flavobacterium psychrophilum JIP02/86 5300184 YP_001296920.1 CDS murC NC_009613.1 2319132 2320478 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2319132..2320478) Flavobacterium psychrophilum JIP02/86 5300232 YP_001296921.1 CDS murG NC_009613.1 2320532 2321635 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2320532..2321635) Flavobacterium psychrophilum JIP02/86 5299890 YP_001296922.1 CDS ftsW NC_009613.1 2321677 2322963 R This is a septum-peptidoglycan biosynthetic protein, involved in cell wall formation. Plays a role in the stabilization of the ftsZ ring during cell division. Integral membrane protein. Inner membrane; cell division protein FtsW complement(2321677..2322963) Flavobacterium psychrophilum JIP02/86 5298995 YP_001296923.1 CDS murD NC_009613.1 2323042 2324373 R Cell wall formation. Peptidoglycan biosynthesis (by similarity); UDP-N-acetylmuramoylalanine--D-glutamateligase complement(2323042..2324373) Flavobacterium psychrophilum JIP02/86 5300233 YP_001296924.1 CDS mraY NC_009613.1 2324375 2325604 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2324375..2325604) Flavobacterium psychrophilum JIP02/86 5299891 YP_001296925.1 CDS murE NC_009613.1 2325668 2327128 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2325668..2327128) Flavobacterium psychrophilum JIP02/86 5299596 YP_001296926.1 CDS ftsI NC_009613.1 2327130 2329133 R Cell wall formation. Essential for the formation of a septum of the murein sacculus. Synthesis of cross-linked peptidoglycan from the lipid intermediates. Peptidoglycan synthesis; final stages (by similarity); peptidoglycan glycosyltransferase FtsI precursor complement(2327130..2329133) Flavobacterium psychrophilum JIP02/86 5298993 YP_001296927.1 CDS FP2063 NC_009613.1 2329124 2329465 R hypothetical protein complement(2329124..2329465) Flavobacterium psychrophilum JIP02/86 5300187 YP_001296928.1 CDS mraW NC_009613.1 2329465 2330340 R Exhibits a S-adenosyl-dependent methyltransferase activity (by similarity); S-adenosyl-methyltransferase MraW complement(2329465..2330340) Flavobacterium psychrophilum JIP02/86 5300290 YP_001296929.1 CDS mraZ NC_009613.1 2330348 2330821 R Homooctamer. Forms a ring (by similarity); protein MraZ complement(2330348..2330821) Flavobacterium psychrophilum JIP02/86 5300113 YP_001296930.1 CDS pcbD NC_009613.1 2331058 2331822 D Probably involved in phenylalanine metabolism; 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolase 2331058..2331822 Flavobacterium psychrophilum JIP02/86 5299597 YP_001296931.1 CDS engB NC_009613.1 2331880 2332497 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2331880..2332497 Flavobacterium psychrophilum JIP02/86 5298612 YP_001296932.1 CDS gldC NC_009613.1 2332616 2332939 R Highly similar to gliding motility protein GldC ofFlavobacterium johnsoniae; gliding motility protein GldC complement(2332616..2332939) Flavobacterium psychrophilum JIP02/86 5300875 YP_001296933.1 CDS gldB NC_009613.1 2333022 2333978 R Highly similar to gliding motility protein GldB ofFlavobacterium johnsoniae; gliding motility protein GldB complement(2333022..2333978) Flavobacterium psychrophilum JIP02/86 5299068 YP_001296934.1 CDS nadE NC_009613.1 2334120 2334926 D NAD biosynthesis; NH(3)-dependent NAD(+) synthetase 2334120..2334926 Flavobacterium psychrophilum JIP02/86 5299778 YP_001296935.1 CDS FP2071 NC_009613.1 2335014 2335643 D Two-component system response regulatory protein containing receiver domain and LuxR-type DNA-binding domain; two-component system response regulatory protein 2335014..2335643 Flavobacterium psychrophilum JIP02/86 5298949 YP_001296936.1 CDS dnaG NC_009613.1 2335684 2337669 R DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis (by similarity); DNA primase complement(2335684..2337669) Flavobacterium psychrophilum JIP02/86 5300291 YP_001296937.1 CDS FP2073 NC_009613.1 2337826 2339100 R Similar to proteins of unknown function of Flavobacterium psychrophilum. Some similarities with proteins of unknown function; hypothetical protein complement(2337826..2339100) Flavobacterium psychrophilum JIP02/86 5300746 YP_001296938.1 CDS FP2074 NC_009613.1 2339259 2340500 R Similar to proteins of unknown function of Flavobacterium psychrophilum. Some similarities with proteins of unknown function; hypothetical protein complement(2339259..2340500) Flavobacterium psychrophilum JIP02/86 5300292 YP_001296939.1 CDS FP2075 NC_009613.1 2340645 2341709 R Probable exported protein; hypothetical protein complement(2340645..2341709) Flavobacterium psychrophilum JIP02/86 5299474 YP_001296940.1 CDS FP2076 NC_009613.1 2341742 2342419 R Probable transmembrane protein. Putative anti ECF- type sigma factor; hypothetical protein complement(2341742..2342419) Flavobacterium psychrophilum JIP02/86 5299475 YP_001296941.1 CDS FP2077 NC_009613.1 2342406 2342966 R Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; RNA polymerase ECF-type sigma factor complement(2342406..2342966) Flavobacterium psychrophilum JIP02/86 5299476 YP_001296942.1 CDS FP2078 NC_009613.1 2343153 2344130 R Similar to geranylgeranyl pyrophosphate synthase COG0142; polyprenyl synthetase complement(2343153..2344130) Flavobacterium psychrophilum JIP02/86 5299477 YP_001296943.1 CDS FP2079 NC_009613.1 2344235 2345116 D lipoprotein precursor 2344235..2345116 Flavobacterium psychrophilum JIP02/86 5299478 YP_001296944.1 CDS yloN NC_009613.1 2345173 2346216 R Similar to protein of unknown function YloN of B. subtilis. Predicted Fe-S-cluster redox enzyme; hypothetical protein complement(2345173..2346216) Flavobacterium psychrophilum JIP02/86 5300372 YP_001296945.1 CDS FP2081 NC_009613.1 2346295 2346936 D Similar to predicted O-methyltransferase COG4122; O-methyltransferase 2346295..2346936 Flavobacterium psychrophilum JIP02/86 5299021 YP_001296946.1 CDS FP2082 NC_009613.1 2346994 2347563 R Probable transmembrane protein; membrane-associated phospholipid phosphatase complement(2346994..2347563) Flavobacterium psychrophilum JIP02/86 5300373 YP_001296947.1 CDS FP2083 NC_009613.1 2347563 2347931 R putative Sec-independent protein translocase (twin-arginine translocation protein) complement(2347563..2347931) Flavobacterium psychrophilum JIP02/86 5300374 YP_001296948.1 CDS clpX NC_009613.1 2348185 2349417 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2348185..2349417) Flavobacterium psychrophilum JIP02/86 5300375 YP_001296949.1 CDS clpP NC_009613.1 2349493 2350194 R Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. May play the role of a master protease which is attracted to different substrates by different specificity factors such as clpA or clpX (by similarity); ATP-dependent Clp protease proteolytic subunit complement(2349493..2350194) Flavobacterium psychrophilum JIP02/86 5299513 YP_001296950.1 CDS tig NC_009613.1 2350437 2351762 R Involved in protein export. Acts as a chaperone bymaintaining the newly synthesized protein in an open conformation (by similarity); trigger factor (TF) complement(2350437..2351762) Flavobacterium psychrophilum JIP02/86 5299512 YP_001296951.1 CDS FP2087 NC_009613.1 2351848 2352192 R Similar to protein of predicted membrane protein COG1950; hypothetical protein complement(2351848..2352192) Flavobacterium psychrophilum JIP02/86 5298674 YP_001296952.1 CDS FP2088 NC_009613.1 2352311 2353087 R Similar to predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) COG0596; hydrolase complement(2352311..2353087) Flavobacterium psychrophilum JIP02/86 5300376 YP_001296953.1 CDS FP2089 NC_009613.1 2353185 2354078 D ABC transporter, permease (IM), export of unknownsubstrat, TC 3.A.1.Y.Z; ABC transporter permease 2353185..2354078 Flavobacterium psychrophilum JIP02/86 5300138 YP_001296954.1 CDS FP2090 NC_009613.1 2354071 2354706 D ABC transporter, ATP-binding protein (ABC), DRI- family, DRB-subfamilly, export of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase 2354071..2354706 Flavobacterium psychrophilum JIP02/86 5300139 YP_001296955.1 CDS pdxJ NC_009613.1 2354729 2355457 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2354729..2355457) Flavobacterium psychrophilum JIP02/86 5300140 YP_001296956.1 CDS FP2092 NC_009613.1 2355768 2356427 D Similar to CBS domain protein of Cytophaga hutchinsonii; hypothetical protein 2355768..2356427 Flavobacterium psychrophilum JIP02/86 5299504 YP_001296957.1 CDS ppnK NC_009613.1 2356504 2357388 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2356504..2357388 Flavobacterium psychrophilum JIP02/86 5300141 YP_001296958.1 CDS FP2094 NC_009613.1 2357524 2358207 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 2357524..2358207 Flavobacterium psychrophilum JIP02/86 5299206 YP_001296959.1 CDS uppS NC_009613.1 2358214 2358954 D Generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide (by similarity); di-trans,poly-cis-decaprenylcistransferase 2358214..2358954 Flavobacterium psychrophilum JIP02/86 5298622 YP_001296960.1 CDS FP2096 NC_009613.1 2358938 2361607 D Similar to outer membrane protein/protective antigen OMA87 COG4775; outer membrane protein precursor 2358938..2361607 Flavobacterium psychrophilum JIP02/86 5299730 YP_001296961.1 CDS FP2097 NC_009613.1 2361648 2362610 D N-terminal region similar to outer membrane protein (OmpH-like) COG2825; OmpH family outer membrane protein 2361648..2362610 Flavobacterium psychrophilum JIP02/86 5298623 YP_001296962.1 CDS FP2098 NC_009613.1 2362654 2363154 D Outer membrane protein (OmpH-like) COG2885; OmpH family outer membrane protein 2362654..2363154 Flavobacterium psychrophilum JIP02/86 5298624 YP_001296963.1 CDS murI NC_009613.1 2363219 2363998 D Peptidoglycan biosynthesis. Provides the (R)- glutamate required for cell wall biosynthesis (by similarity); glutamate racemase 2363219..2363998 Flavobacterium psychrophilum JIP02/86 5298625 YP_001296964.1 CDS FP2100 NC_009613.1 2364374 2364892 R Similar to carbonic anhydrases/acetyltransferases,isoleucine patch superfamily COG0663; carbonic anhydrase/acetyltransferase family protein complement(2364374..2364892) Flavobacterium psychrophilum JIP02/86 5298996 YP_001296965.1 CDS FP2101 NC_009613.1 2364940 2365938 R Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein complement(2364940..2365938) Flavobacterium psychrophilum JIP02/86 5298626 YP_001296966.1 CDS FP2102 NC_009613.1 2366455 2367351 D Some similarities with thioredoxin-like proteins and domains COG0694; hypothetical protein 2366455..2367351 Flavobacterium psychrophilum JIP02/86 5300404 YP_001296967.1 CDS yyaL NC_009613.1 2367481 2369541 D Similar to highly conserved protein containing a thioredoxin domain YyaL of B. subtilis; hypothetical protein 2367481..2369541 Flavobacterium psychrophilum JIP02/86 5300405 YP_001296968.1 CDS FP2104 NC_009613.1 2369593 2369946 D Some weak similarities with protein of unknown function of Neurospora crassa; hypothetical protein 2369593..2369946 Flavobacterium psychrophilum JIP02/86 5300507 YP_001296969.1 CDS FP2105 NC_009613.1 2369947 2370615 R Similar to inactive homolog of metal-dependent proteases, putative molecular chaperone COG1214; hypothetical protein complement(2369947..2370615) Flavobacterium psychrophilum JIP02/86 5300406 YP_001296970.1 CDS cyoE NC_009613.1 2370799 2371701 D Converts protoheme IX and farnesyl diphosphate to heme O; Protoheme IX farnesyltransferase 2370799..2371701 Flavobacterium psychrophilum JIP02/86 5300407 YP_001296971.1 CDS FP2107 NC_009613.1 2371707 2372291 D Similar to heme/copper-type cytochrome/quinol oxidase, subunit 3 COG1845; cytochrome c oxidase family protein 2371707..2372291 Flavobacterium psychrophilum JIP02/86 5300937 YP_001296972.1 CDS FP2108 NC_009613.1 2372332 2373339 D Similar to heme/copper-type cytochrome/quinol oxidase, subunit 3 COG1845; cytochrome c oxidase family protein 2372332..2373339 Flavobacterium psychrophilum JIP02/86 5300408 YP_001296973.1 CDS FP2109 NC_009613.1 2373368 2373718 D Probable transmembrane protein; hypothetical protein 2373368..2373718 Flavobacterium psychrophilum JIP02/86 5299355 YP_001296974.1 CDS FP2110 NC_009613.1 2373797 2374471 D Probable transmembrane protein; hypothetical protein 2373797..2374471 Flavobacterium psychrophilum JIP02/86 5299356 YP_001296975.1 CDS FP2111 NC_009613.1 2374582 2375265 D Similar to uncharacterized protein SCO1/SenC/PrrC,involved in biogenesis of respiratory and photosynthetic systems COG1999; cytochrome c oxidase biogenesis protein 2374582..2375265 Flavobacterium psychrophilum JIP02/86 5299357 YP_001296976.1 CDS yozB NC_009613.1 2375352 2375894 D Similar to protein of unknown function YozB of B. subtilis; YozB protein 2375352..2375894 Flavobacterium psychrophilum JIP02/86 5299358 YP_001296977.1 CDS FP2113 NC_009613.1 2375884 2376126 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 2375884..2376126 Flavobacterium psychrophilum JIP02/86 5299025 YP_001296978.1 CDS FP2114 NC_009613.1 2376127 2377521 R Similar to protein of unknown function of Cytophaga hutchinsonii and Trichodesmium erythraeum; hypothetical protein complement(2376127..2377521) Flavobacterium psychrophilum JIP02/86 5299359 YP_001296979.1 CDS FP2115 NC_009613.1 2377670 2379112 D Outer Membrane Factor (OMF) Family. TC 1.B.17.Y.Z; outer membrane efflux protein precursor 2377670..2379112 Flavobacterium psychrophilum JIP02/86 5300948 YP_001296980.1 CDS FP2116 NC_009613.1 2379118 2380455 D Membrane Fusion Protein (MFP) Family. Probable transmembrane protein. TC =8.A.1.Y.Z; membrane fusion efflux protein 2379118..2380455 Flavobacterium psychrophilum JIP02/86 5300949 YP_001296981.1 CDS FP2117 NC_009613.1 2380786 2382900 R Some similarities with proteins of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2380786..2382900) Flavobacterium psychrophilum JIP02/86 5300950 YP_001296982.1 CDS deoC NC_009613.1 2382911 2383654 R Nucleotide and deoxyribonucleotide catabolism; deoxyribose-phosphate aldolase complement(2382911..2383654) Flavobacterium psychrophilum JIP02/86 5300951 YP_001296983.1 CDS FP2119 NC_009613.1 2383726 2384031 R Similar to fjo27 protein of Flavobacterium johnsoniae. Probable transmembrane protein; hypothetical protein complement(2383726..2384031) Flavobacterium psychrophilum JIP02/86 5299106 YP_001296984.1 CDS gcvH NC_009613.1 2384105 2384485 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(2384105..2384485) Flavobacterium psychrophilum JIP02/86 5300720 YP_001296985.1 CDS sprA NC_009613.1 2386299 2393537 R Similar to SprA protein involved in gliding motility and chitin utilization of Flavobacterium johnsoniae. Probable exported protein; SprA protein complement(2386299..2393537) Flavobacterium psychrophilum JIP02/86 5300557 YP_001296986.1 CDS ruvA NC_009613.1 2393541 2394122 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2393541..2394122) Flavobacterium psychrophilum JIP02/86 5300763 YP_001296987.1 CDS maeB NC_009613.1 2394196 2396511 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2394196..2396511) Flavobacterium psychrophilum JIP02/86 5299340 YP_001296988.1 CDS FP2124 NC_009613.1 2396575 2397501 R Similar to uncharacterized Fe-S protein COG1600; putative 4Fe-4S binding protein complement(2396575..2397501) Flavobacterium psychrophilum JIP02/86 5299587 YP_001296989.1 CDS ruvB NC_009613.1 2397572 2398594 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2397572..2398594) Flavobacterium psychrophilum JIP02/86 5300721 YP_001296990.1 CDS FP2126 NC_009613.1 2398803 2400248 D Amino Acid-Polyamine-Organocation (APC) Superfamily protein. TC 2.A.3.Y.Z; amino acid-transporting permease 2398803..2400248 Flavobacterium psychrophilum JIP02/86 5299341 YP_001296991.1 CDS FP2127 NC_009613.1 2400389 2402632 R Some similarities with aminopeptidase N COG0308; aminopeptidase complement(2400389..2402632) Flavobacterium psychrophilum JIP02/86 5300722 YP_001296992.1 CDS FP2128 NC_009613.1 2402691 2403194 R hypothetical protein complement(2402691..2403194) Flavobacterium psychrophilum JIP02/86 5300723 YP_001296993.1 CDS FP2129 NC_009613.1 2403208 2403927 R hypothetical protein complement(2403208..2403927) Flavobacterium psychrophilum JIP02/86 5300724 YP_001296994.1 CDS pepE NC_009613.1 2404044 2404751 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 2404044..2404751 Flavobacterium psychrophilum JIP02/86 5298472 YP_001296995.1 CDS yitI NC_009613.1 2405141 2405572 D Similar to YitI protein of Bacillus sp.; acetyltransferase 2405141..2405572 Flavobacterium psychrophilum JIP02/86 5299213 YP_001296996.1 CDS FP2133 NC_009613.1 2405582 2407282 D Similar to uncharacterized protein conserved in bacteria COG2989; hypothetical protein 2405582..2407282 Flavobacterium psychrophilum JIP02/86 5299145 YP_001296997.1 CDS FP2134 NC_009613.1 2407271 2407981 R Similar to uncharacterized protein conserved in bacteria; hypothetical protein complement(2407271..2407981) Flavobacterium psychrophilum JIP02/86 5298473 YP_001296998.1 CDS gpmI NC_009613.1 2408222 2409739 D catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 2408222..2409739 Flavobacterium psychrophilum JIP02/86 5298474 YP_001296999.1 CDS FP2136 NC_009613.1 2410113 2411156 D integrase/recombinase 2410113..2411156 Flavobacterium psychrophilum JIP02/86 5298796 YP_001297000.1 CDS FP2137 NC_009613.1 2411346 2413610 D Similar to type I restriction-modification system methyltransferase subunit COG0286; modification methyltransferase 2411346..2413610 Flavobacterium psychrophilum JIP02/86 5298475 YP_001297001.1 CDS FP2138 NC_009613.1 2414935 2415639 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2414935..2415639 Flavobacterium psychrophilum JIP02/86 5298476 YP_001297002.1 CDS FP2139 NC_009613.1 2415642 2415821 D Putative lipoprotein; hypothetical protein 2415642..2415821 Flavobacterium psychrophilum JIP02/86 5299900 YP_001297003.1 CDS FP2140 NC_009613.1 2415844 2416296 D Weakly similar to protein of unknown function of Xanthomonas campestris and Haemophilus influenzae; hypothetical protein 2415844..2416296 Flavobacterium psychrophilum JIP02/86 5299901 YP_001297004.1 CDS FP2141 NC_009613.1 2416709 2417944 D Probable Drug:H+ Antiporter-1 (12 Spanner) (DHA1) Family Protein. TC : 2.A.1.2.Z; major facilitator superfamily permease 2416709..2417944 Flavobacterium psychrophilum JIP02/86 5299902 YP_001297005.1 CDS FP2142 NC_009613.1 2420929 2421435 R Probable transmembrane protein; hypothetical protein complement(2420929..2421435) Flavobacterium psychrophilum JIP02/86 5299903 YP_001297006.1 CDS FP2143 NC_009613.1 2422088 2422312 R hypothetical protein complement(2422088..2422312) Flavobacterium psychrophilum JIP02/86 5299904 YP_001297007.1 CDS FP2144 NC_009613.1 2423057 2423443 R hypothetical protein complement(2423057..2423443) Flavobacterium psychrophilum JIP02/86 5298651 YP_001297008.1 CDS FP2145 NC_009613.1 2423593 2423772 R hypothetical protein complement(2423593..2423772) Flavobacterium psychrophilum JIP02/86 5298652 YP_001297009.1 CDS FP2146 NC_009613.1 2423982 2424260 R hypothetical protein complement(2423982..2424260) Flavobacterium psychrophilum JIP02/86 5298653 YP_001297010.1 CDS FP2147 NC_009613.1 2424498 2426762 D Similar to type I restriction-modification system methyltransferase subunit COG0286; modification methyltransferase 2424498..2426762 Flavobacterium psychrophilum JIP02/86 5298654 YP_001297011.1 CDS FP2148 NC_009613.1 2426910 2427137 R hypothetical protein complement(2426910..2427137) Flavobacterium psychrophilum JIP02/86 5298655 YP_001297012.1 CDS FP2149 NC_009613.1 2427391 2428287 D type II restriction endonuclease 2427391..2428287 Flavobacterium psychrophilum JIP02/86 5300203 YP_001297013.1 CDS FP2150 NC_009613.1 2428274 2429281 D Similar to site-specific DNA methylase COG0270. Probable DNA (cytosine-5-)-methyltransferase; type II modification methyltransferase 2428274..2429281 Flavobacterium psychrophilum JIP02/86 5300204 YP_001297014.1 CDS FP2151 NC_009613.1 2430315 2431040 D Probable transmembrane protein; hypothetical protein 2430315..2431040 Flavobacterium psychrophilum JIP02/86 5300205 YP_001297015.1 CDS FP2152 NC_009613.1 2433798 2434544 R Probable transmembrane protein; hypothetical protein complement(2433798..2434544) Flavobacterium psychrophilum JIP02/86 5300206 YP_001297016.1 CDS FP2153 NC_009613.1 2435373 2436140 R Some similarities with protein of unknown functionof Leptospira interrogans; hypothetical protein complement(2435373..2436140) Flavobacterium psychrophilum JIP02/86 5300533 YP_001297017.1 CDS FP2154 NC_009613.1 2436562 2437152 R Some weak similarities with protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2436562..2437152) Flavobacterium psychrophilum JIP02/86 5300534 YP_001297018.1 CDS FP2155 NC_009613.1 2437165 2437839 R Some weak similarities with protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane potein; hypothetical protein complement(2437165..2437839) Flavobacterium psychrophilum JIP02/86 5300535 YP_001297019.1 CDS FP2156 NC_009613.1 2438104 2438565 R Some similarities with TonB protein; putative transporter complement(2438104..2438565) Flavobacterium psychrophilum JIP02/86 5300536 YP_001297020.1 CDS FP2157 NC_009613.1 2438906 2439214 R hypothetical protein complement(2438906..2439214) Flavobacterium psychrophilum JIP02/86 5300537 YP_001297021.1 CDS FP2158 NC_009613.1 2439216 2439689 R hypothetical protein complement(2439216..2439689) Flavobacterium psychrophilum JIP02/86 5300834 YP_001297022.1 CDS FP2159 NC_009613.1 2441952 2443109 R Similar to uncharacterized conserved protein COG3177; hypothetical protein complement(2441952..2443109) Flavobacterium psychrophilum JIP02/86 5300835 YP_001297023.1 CDS FP2160 NC_009613.1 2446975 2448114 R Probable pseudogene, some similarities with protein of unknown function; hypothetical protein complement(2446975..2448114) Flavobacterium psychrophilum JIP02/86 5300836 YP_001297024.1 CDS FP2161 NC_009613.1 2448145 2449317 R Some weak similarities with protein of unknown function of Synechococcus elongatus. Probable transmembrane protein; hypothetical protein complement(2448145..2449317) Flavobacterium psychrophilum JIP02/86 5300837 YP_001297025.1 CDS FP2162 NC_009613.1 2449622 2450824 R hypothetical protein complement(2449622..2450824) Flavobacterium psychrophilum JIP02/86 5300838 YP_001297026.1 CDS FP2163 NC_009613.1 2451107 2451526 R hypothetical protein complement(2451107..2451526) Flavobacterium psychrophilum JIP02/86 5300552 YP_001297027.1 CDS FP2165 NC_009613.1 2454055 2454813 R N-terminal region weakly similar to response regulator receiver domain; putative two-component system response regulatory protein complement(2454055..2454813) Flavobacterium psychrophilum JIP02/86 5300554 YP_001297028.1 CDS FP2166 NC_009613.1 2454978 2457920 R Some similarities chromosome segregation ATPases COG1196; hypothetical protein complement(2454978..2457920) Flavobacterium psychrophilum JIP02/86 5300555 YP_001297029.1 CDS FP2167 NC_009613.1 2457998 2460691 R Weakly similar to pfam04851, ResIII, Type III restriction enzyme, res subunit. This family represents the res subunit of type III restriction enzymes; type III restriction enzyme complement(2457998..2460691) Flavobacterium psychrophilum JIP02/86 5300556 YP_001297030.1 CDS rhuM NC_009613.1 2460849 2461847 R Similar to virulence protein COG3943; RhuM protein complement(2460849..2461847) Flavobacterium psychrophilum JIP02/86 5299676 YP_001297031.1 CDS FP2169 NC_009613.1 2461902 2463566 R Similar to adenine specific DNA methylase Mod COG2189; type III modification methyltransferase complement(2461902..2463566) Flavobacterium psychrophilum JIP02/86 5300102 YP_001297032.1 CDS FP2170 NC_009613.1 2463895 2466003 R Similar to protein of unknown function of Helicobacter hepaticus; hypothetical protein complement(2463895..2466003) Flavobacterium psychrophilum JIP02/86 5299677 YP_001297033.1 CDS FP2171 NC_009613.1 2466003 2467841 R Similar to protein of unknown function of Helicobacter hepaticus; hypothetical protein complement(2466003..2467841) Flavobacterium psychrophilum JIP02/86 5299678 YP_001297034.1 CDS FP2172 NC_009613.1 2467973 2469709 R Some weak similarities with eukaryotic proteins ofunknown function; hypothetical protein complement(2467973..2469709) Flavobacterium psychrophilum JIP02/86 5299679 YP_001297035.1 CDS FP2173 NC_009613.1 2470269 2472362 R Similar to protein of unknown function of Bacteroides thetaiotaomicron; hypothetical protein complement(2470269..2472362) Flavobacterium psychrophilum JIP02/86 5299680 YP_001297036.1 CDS FP2174 NC_009613.1 2472460 2472741 R Similar to protein of unknown function of Bacteroides spp.; hypothetical protein complement(2472460..2472741) Flavobacterium psychrophilum JIP02/86 5298762 YP_001297037.1 CDS FP2175 NC_009613.1 2472831 2472974 R hypothetical protein complement(2472831..2472974) Flavobacterium psychrophilum JIP02/86 5298763 YP_001297038.1 CDS FP2176 NC_009613.1 2472984 2473538 R hypothetical protein complement(2472984..2473538) Flavobacterium psychrophilum JIP02/86 5298764 YP_001297039.1 CDS FP2177 NC_009613.1 2475056 2475919 D Some weak similarities with MoxR-like ATPases COG0714; hypothetical protein 2475056..2475919 Flavobacterium psychrophilum JIP02/86 5298765 YP_001297040.1 CDS FP2178 NC_009613.1 2475921 2476739 D Similar to protein of unknown function (ORF14) of Staphylococcus phage K; phage protein 2475921..2476739 Flavobacterium psychrophilum JIP02/86 5299263 YP_001297041.1 CDS FP2179 NC_009613.1 2478443 2479156 R hypothetical protein complement(2478443..2479156) Flavobacterium psychrophilum JIP02/86 5299264 YP_001297042.1 CDS FP2180 NC_009613.1 2481085 2482176 R Probable transmembrane protein; hypothetical protein complement(2481085..2482176) Flavobacterium psychrophilum JIP02/86 5299265 YP_001297043.1 CDS FP2181 NC_009613.1 2482205 2482450 R Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein complement(2482205..2482450) Flavobacterium psychrophilum JIP02/86 5299266 YP_001297044.1 CDS FP2182 NC_009613.1 2482660 2484147 R Similar to beta-lactamase class C and other penicillin binding proteins COG1680. Probably involved in peptidoglycan modification (by similarity); penicillin-binding protein complement(2482660..2484147) Flavobacterium psychrophilum JIP02/86 5299267 YP_001297045.1 CDS FP2183 NC_009613.1 2486535 2487683 R Similar to protein of unknown function of Desulfotalea psychrophila; hypothetical protein complement(2486535..2487683) Flavobacterium psychrophilum JIP02/86 5298716 YP_001297046.1 CDS FP2184 NC_009613.1 2487924 2488124 D hypothetical protein 2487924..2488124 Flavobacterium psychrophilum JIP02/86 5298717 YP_001297047.1 CDS FP2185 NC_009613.1 2490458 2490916 R hypothetical protein complement(2490458..2490916) Flavobacterium psychrophilum JIP02/86 5298718 YP_001297048.1 CDS FP2186 NC_009613.1 2491100 2491795 R Similar to protein of unknown function of Shewanella; hypothetical protein complement(2491100..2491795) Flavobacterium psychrophilum JIP02/86 5298719 YP_001297049.1 CDS FP2187 NC_009613.1 2491991 2492218 D hypothetical protein 2491991..2492218 Flavobacterium psychrophilum JIP02/86 5298720 YP_001297050.1 CDS FP2188 NC_009613.1 2494215 2494592 D hypothetical protein 2494215..2494592 Flavobacterium psychrophilum JIP02/86 5300349 YP_001297051.1 CDS FP2189 NC_009613.1 2496530 2496916 D hypothetical protein 2496530..2496916 Flavobacterium psychrophilum JIP02/86 5300350 YP_001297052.1 CDS FP2195 NC_009613.1 2504276 2505529 R ABC transporter, permease (IM), o228-family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease complement(2504276..2505529) Flavobacterium psychrophilum JIP02/86 5300351 YP_001297053.1 CDS FP2196 NC_009613.1 2505581 2506843 D Similar to uncharacterized protein conserved in bacteria COG3876; hypothetical protein 2505581..2506843 Flavobacterium psychrophilum JIP02/86 5298752 YP_001297054.1 CDS FP2197 NC_009613.1 2506866 2507360 R Similar to protein of unknown function of Streptococcus sp. and Lactococcus lactis; hypothetical protein complement(2506866..2507360) Flavobacterium psychrophilum JIP02/86 5300353 YP_001297055.1 CDS FP2198 NC_009613.1 2507527 2508228 D Similar to putative methyltransferases of the CFB phylum; putative methyltransferase 2507527..2508228 Flavobacterium psychrophilum JIP02/86 5300566 YP_001297056.1 CDS FP2199 NC_009613.1 2508533 2508925 R Some similarities with TonB protein; putative transporter complement(2508533..2508925) Flavobacterium psychrophilum JIP02/86 5300567 YP_001297057.1 CDS ygcF NC_009613.1 2509448 2510080 R Similar to organic radical activating enzymes COG0602; hypothetical protein complement(2509448..2510080) Flavobacterium psychrophilum JIP02/86 5300568 YP_001297058.1 CDS FP2201 NC_009613.1 2510689 2511309 D hypothetical protein 2510689..2511309 Flavobacterium psychrophilum JIP02/86 5300965 YP_001297059.1 CDS FP2202 NC_009613.1 2511337 2511837 D hypothetical protein 2511337..2511837 Flavobacterium psychrophilum JIP02/86 5300569 YP_001297060.1 CDS FP2203 NC_009613.1 2511996 2512838 D hypothetical protein 2511996..2512838 Flavobacterium psychrophilum JIP02/86 5300570 YP_001297061.1 CDS FP2204 NC_009613.1 2513855 2516095 D Some similarities with Cyanophage P-SSM4 fiber protein; phage protein 2513855..2516095 Flavobacterium psychrophilum JIP02/86 5300086 YP_001297062.1 CDS FP2205 NC_009613.1 2516558 2518252 R Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(2516558..2518252) Flavobacterium psychrophilum JIP02/86 5300087 YP_001297063.1 CDS FP2206 NC_009613.1 2518261 2519169 R ABC transporter, binding protein (BP), MOI- family,phosphate import (putative), TC 3.A.1.7.1; phosphate ABC transporter complement(2518261..2519169) Flavobacterium psychrophilum JIP02/86 5300088 YP_001297064.1 CDS tonB NC_009613.1 2519396 2520214 R Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates such as cobalamin, and various iron compounds (such as iron dicitrate, enterochelin, aerobactin, etc.). Forms a complexwith the accessory proteins exbB and exbD (by similarity); protein TonB complement(2519396..2520214) Flavobacterium psychrophilum JIP02/86 5300089 YP_001297065.1 CDS exbD NC_009613.1 2520246 2520788 R Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates; biopolymer transport ExbD protein complement(2520246..2520788) Flavobacterium psychrophilum JIP02/86 5299336 YP_001297066.1 CDS FP2209 NC_009613.1 2520808 2521422 R Similar to protein of unknown function of the CFB phylum. Probable exported protein; hypothetical protein complement(2520808..2521422) Flavobacterium psychrophilum JIP02/86 5300209 YP_001297067.1 CDS exbB NC_009613.1 2521488 2522306 R Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates. Protects exbD from proteolytic degradation and functionally stabilizes tonB; biopolymer transport ExbB protein complement(2521488..2522306) Flavobacterium psychrophilum JIP02/86 5300730 YP_001297068.1 CDS FP2211 NC_009613.1 2522696 2524201 D Similar to predicted ATPase COG0433; hypothetical protein 2522696..2524201 Flavobacterium psychrophilum JIP02/86 5300208 YP_001297069.1 CDS kmo NC_009613.1 2524352 2525695 R Tryptophan metabolism; kynurenine 3-monooxygenase complement(2524352..2525695) Flavobacterium psychrophilum JIP02/86 5300731 YP_001297070.1 CDS pac NC_009613.1 2525782 2528166 R Penicillins and cephalosporins biosynthesis; penicillin G acylase precursor complement(2525782..2528166) Flavobacterium psychrophilum JIP02/86 5300766 YP_001297071.1 CDS speB NC_009613.1 2528243 2529325 R Catalyzes the formation of putrescine from agmatine. Putrescine biosynthesis from arginine; second (last) step and spermidine biosynthesis from arginine; second step.; agmatinase complement(2528243..2529325) Flavobacterium psychrophilum JIP02/86 5300144 YP_001297072.1 CDS kynU NC_009613.1 2529366 2530643 R Tryptophan metabolism; kynureninase complement(2529366..2530643) Flavobacterium psychrophilum JIP02/86 5300761 YP_001297073.1 CDS rpmA NC_009613.1 2532012 2532272 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2532012..2532272) Flavobacterium psychrophilum JIP02/86 5300114 YP_001297074.1 CDS rplU NC_009613.1 2532303 2532938 R 50S ribosomal protein L21 complement(2532303..2532938) Flavobacterium psychrophilum JIP02/86 5300586 YP_001297075.1 CDS nuoN NC_009613.1 2533340 2534707 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, N subunit complement(2533340..2534707) Flavobacterium psychrophilum JIP02/86 5300616 YP_001297076.1 CDS nuoM NC_009613.1 2534755 2536194 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, M subunit complement(2534755..2536194) Flavobacterium psychrophilum JIP02/86 5298981 YP_001297077.1 CDS nuoL NC_009613.1 2536207 2538090 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, L subunit complement(2536207..2538090) Flavobacterium psychrophilum JIP02/86 5298980 YP_001297078.1 CDS nuoK NC_009613.1 2538097 2538417 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, K subunit complement(2538097..2538417) Flavobacterium psychrophilum JIP02/86 5298979 YP_001297079.1 CDS nuoJ NC_009613.1 2538419 2538931 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, J subunit complement(2538419..2538931) Flavobacterium psychrophilum JIP02/86 5300278 YP_001297080.1 CDS nuoI NC_009613.1 2538931 2539482 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, I subunit complement(2538931..2539482) Flavobacterium psychrophilum JIP02/86 5300277 YP_001297081.1 CDS nuoH NC_009613.1 2539491 2540522 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, H subunit complement(2539491..2540522) Flavobacterium psychrophilum JIP02/86 5300276 YP_001297082.1 CDS nuoG NC_009613.1 2540515 2541570 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (by similarity); NADH dehydrogenase I, G subunit, N-terminal region complement(2540515..2541570) Flavobacterium psychrophilum JIP02/86 5300275 YP_001297083.1 CDS FP2226 NC_009613.1 2541607 2542578 R Probable NADH dehydrogenase I subunit; hypothetical protein complement(2541607..2542578) Flavobacterium psychrophilum JIP02/86 5300274 YP_001297084.1 CDS nuoF NC_009613.1 2542594 2543961 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, F subunit complement(2542594..2543961) Flavobacterium psychrophilum JIP02/86 5300732 YP_001297085.1 CDS nuoE NC_009613.1 2543963 2544493 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, E subunit complement(2543963..2544493) Flavobacterium psychrophilum JIP02/86 5300311 YP_001297086.1 CDS nuoD NC_009613.1 2544948 2546186 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, D subunit complement(2544948..2546186) Flavobacterium psychrophilum JIP02/86 5300310 YP_001297087.1 CDS nuoC NC_009613.1 2546316 2546837 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, C subunit complement(2546316..2546837) Flavobacterium psychrophilum JIP02/86 5300309 YP_001297088.1 CDS nuoB NC_009613.1 2546842 2547387 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2546842..2547387) Flavobacterium psychrophilum JIP02/86 5300308 YP_001297089.1 CDS nuoA NC_009613.1 2547537 2547902 R NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain (By similarity); NADH dehydrogenase I, A subunit complement(2547537..2547902) Flavobacterium psychrophilum JIP02/86 5300307 YP_001297090.1 CDS FP2233 NC_009613.1 2548237 2553909 D Similar to large extracellular alpha-helical protein COG2373; lipoprotein precursor 2548237..2553909 Flavobacterium psychrophilum JIP02/86 5300324 YP_001297091.1 CDS pbpC NC_009613.1 2554017 2556392 D Cell wall formation; membrane carboxypeptidase/penicillin-binding protein PbpC 2554017..2556392 Flavobacterium psychrophilum JIP02/86 5300733 YP_001297092.1 CDS haaO NC_009613.1 2556393 2556911 R catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis; 3-hydroxyanthranilate 3,4-dioxygenase complement(2556393..2556911) Flavobacterium psychrophilum JIP02/86 5298859 YP_001297093.1 CDS FP2236 NC_009613.1 2556935 2557300 R hypothetical protein complement(2556935..2557300) Flavobacterium psychrophilum JIP02/86 5298864 YP_001297094.1 CDS FP2237 NC_009613.1 2557363 2558469 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2557363..2558469) Flavobacterium psychrophilum JIP02/86 5300734 YP_001297095.1 CDS FP2238 NC_009613.1 2559173 2561950 D Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor 2559173..2561950 Flavobacterium psychrophilum JIP02/86 5299920 YP_001297096.1 CDS FP2239 NC_009613.1 2561962 2563353 D Some weak similarities with proteins of unknown function of Bacteroides thetaiotaomicron; putative lipoprotein 2561962..2563353 Flavobacterium psychrophilum JIP02/86 5299921 YP_001297097.1 CDS FP2240 NC_009613.1 2563725 2564321 R hypothetical protein complement(2563725..2564321) Flavobacterium psychrophilum JIP02/86 5299922 YP_001297098.1 CDS FP2241 NC_009613.1 2564636 2564770 R hypothetical protein complement(2564636..2564770) Flavobacterium psychrophilum JIP02/86 5299923 YP_001297099.1 CDS lepA NC_009613.1 2565122 2566918 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2565122..2566918 Flavobacterium psychrophilum JIP02/86 5299924 YP_001297100.1 CDS FP2243 NC_009613.1 2567565 2568047 R Similar to uncharacterized protein conserved in bacteria COG2137; hypothetical protein complement(2567565..2568047) Flavobacterium psychrophilum JIP02/86 5300115 YP_001297101.1 CDS FP2244 NC_009613.1 2568181 2571096 D Weakly similar to PPE-repeat protein of Cytophaga hutchinsonii; hypothetical protein 2568181..2571096 Flavobacterium psychrophilum JIP02/86 5299411 YP_001297102.1 CDS recA NC_009613.1 2572907 2573911 D Can catalyze the hydrolysis of ATP in the presenceof single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP- dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation and leading to its autocatalytic cleavage (by similarity); recombinase A 2572907..2573911 Flavobacterium psychrophilum JIP02/86 5299412 YP_001297103.1 CDS FP2246 NC_009613.1 2573956 2574702 R Similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase COG0204; acyltransferase complement(2573956..2574702) Flavobacterium psychrophilum JIP02/86 5299380 YP_001297104.1 CDS trpS NC_009613.1 2574870 2575844 D tryptophan--tRNA ligase 2574870..2575844 Flavobacterium psychrophilum JIP02/86 5299413 YP_001297105.1 CDS FP2248 NC_009613.1 2576618 2577070 R Tetrahydrobiopterin biosynthesis; second step; 6-pyruvoyltetrahydrobiopterin synthase complement(2576618..2577070) Flavobacterium psychrophilum JIP02/86 5299831 YP_001297106.1 CDS rpoN NC_009613.1 2577802 2579268 R This sigma factor is responsible for the expression of enzymes involved in arginine catabolism. The open complex (sigma-54 and core RNA polymerase) serves as the receptor for the receipt of the melting signal from the remotely bound activator protein glnG(ntrC) (by similarity); RNA polymerase sigma-54 factor RpoN complement(2577802..2579268) Flavobacterium psychrophilum JIP02/86 5299414 YP_001297107.1 CDS asnC NC_009613.1 2579360 2580796 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2579360..2580796) Flavobacterium psychrophilum JIP02/86 5300682 YP_001297108.1 CDS FP2251 NC_009613.1 2581035 2583458 R Similar to predicted exporters of the RND superfamily COG1033; exporter complement(2581035..2583458) Flavobacterium psychrophilum JIP02/86 5298919 YP_001297109.1 CDS FP2252 NC_009613.1 2583670 2584662 R Similar to tRNA-dihydrouridine synthase COG0042. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs (By similarity); tRNA-dihydrouridine synthase complement(2583670..2584662) Flavobacterium psychrophilum JIP02/86 5299415 YP_001297110.1 CDS FP2253 NC_009613.1 2584859 2586157 R Similar to coenzyme F390 synthetase COG1541; coenzyme F390 synthetase complement(2584859..2586157) Flavobacterium psychrophilum JIP02/86 5299063 YP_001297111.1 CDS FP2254 NC_009613.1 2586154 2587824 R Some weak similarities with predicted choloylglycine hydrolase COG4927; hypothetical protein complement(2586154..2587824) Flavobacterium psychrophilum JIP02/86 5299064 YP_001297112.1 CDS FP2255 NC_009613.1 2587831 2589348 R Similar to phytoene dehydrogenase and related proteins COG1233; hypothetical protein complement(2587831..2589348) Flavobacterium psychrophilum JIP02/86 5299065 YP_001297113.1 CDS FP2256 NC_009613.1 2589348 2593031 R N-terminal region similar to predicted exporter COG4258 and C-terminal region similar to 1-acyl-sn- glycerol-3-phosphate acyltransferase COG0204; bifunctional exporter/1-acyl-sn-glycerol-3-phosphate acyltransferase precursor complement(2589348..2593031) Flavobacterium psychrophilum JIP02/86 5299066 YP_001297114.1 CDS FP2257 NC_009613.1 2593035 2594216 R N-terminal region similar to glycosyltransferases involved in cell wall biogenesis COG0463 and C-terminal region similar to uncharacterized protein conserved in bacteria COG3216. Probable transmembrane protein; glycosyl transferase, group 2 family protein complement(2593035..2594216) Flavobacterium psychrophilum JIP02/86 5299067 YP_001297115.1 CDS FP2258 NC_009613.1 2594232 2594717 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2594232..2594717) Flavobacterium psychrophilum JIP02/86 5300090 YP_001297116.1 CDS FP2259 NC_009613.1 2594720 2595091 R Similar to 3-hydroxymyristoyl/3-hydroxydecanoyl- (acyl carrier protein) dehydratases COG0764; dehydratase complement(2594720..2595091) Flavobacterium psychrophilum JIP02/86 5300091 YP_001297117.1 CDS FP2260 NC_009613.1 2595097 2595723 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2595097..2595723) Flavobacterium psychrophilum JIP02/86 5300092 YP_001297118.1 CDS FP2261 NC_009613.1 2595726 2596274 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2595726..2596274) Flavobacterium psychrophilum JIP02/86 5300093 YP_001297119.1 CDS FP2262 NC_009613.1 2596324 2596956 R Similar to outer membrane lipoprotein-sorting protein LolA COG2834; hypothetical protein complement(2596324..2596956) Flavobacterium psychrophilum JIP02/86 5298513 YP_001297120.1 CDS FP2263 NC_009613.1 2596946 2597722 R Similar to predicted xylanase/chitin deacetylase COG0726. Probable transmembrane protein; polysaccharide deacetylase complement(2596946..2597722) Flavobacterium psychrophilum JIP02/86 5298514 YP_001297121.1 CDS FP2264 NC_009613.1 2597716 2598780 R Similar to 3-oxoacyl-(acyl-carrier-protein) synthase COG0304; 3-oxoacyl-(acyl-carrier-protein) synthase complement(2597716..2598780) Flavobacterium psychrophilum JIP02/86 5298515 YP_001297122.1 CDS FP2265 NC_009613.1 2598777 2599982 R Fatty acid biosynthesis; 3-oxoacyl-(acyl-carrier-protein) synthase complement(2598777..2599982) Flavobacterium psychrophilum JIP02/86 5298516 YP_001297123.1 CDS FP2266 NC_009613.1 2600032 2600400 R Similar to protein of unknown function; hypothetical protein complement(2600032..2600400) Flavobacterium psychrophilum JIP02/86 5298517 YP_001297124.1 CDS FP2267 NC_009613.1 2600440 2600697 R Phosphopantetheine-binding domain protein; Acyl carrier protein complement(2600440..2600697) Flavobacterium psychrophilum JIP02/86 5298707 YP_001297125.1 CDS FP2268 NC_009613.1 2600699 2601316 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2600699..2601316) Flavobacterium psychrophilum JIP02/86 5298708 YP_001297126.1 CDS FP2269 NC_009613.1 2601316 2602452 R Fatty acid biosynthesis; 3-oxoacyl-(acyl-carrier-protein) synthase complement(2601316..2602452) Flavobacterium psychrophilum JIP02/86 5298709 YP_001297127.1 CDS FP2270 NC_009613.1 2602455 2602904 R Similar to predicted thioesterase COG0824; esterase complement(2602455..2602904) Flavobacterium psychrophilum JIP02/86 5298710 YP_001297128.1 CDS FP2271 NC_009613.1 2602879 2604144 R ABC transporter, permease (IM), DRA- or DRI- family, export of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease complement(2602879..2604144) Flavobacterium psychrophilum JIP02/86 5298711 YP_001297129.1 CDS FP2272 NC_009613.1 2604152 2604904 R ABC transporter, ATP-binding protein (ABC), DRA- or DRI-family, export of unknown substrat, TC 3.A.1.Y.Z; ABC transporter ATPase complement(2604152..2604904) Flavobacterium psychrophilum JIP02/86 5300354 YP_001297130.1 CDS hpaIIR NC_009613.1 2604913 2605986 R Endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Recognizes the double-stranded sequence CCGG and cleaves afterC-1 (by similarity); Type II restriction endonuclease HpaII complement(2604913..2605986) Flavobacterium psychrophilum JIP02/86 5300355 YP_001297131.1 CDS hpaIIM NC_009613.1 2605970 2607247 R This methylase recognizes the double-stranded sequence CCGG, causes specific methylation on C-2 on both strands, and protects the DNA from cleavage by the HpaII endonuclease (by similarity); Type II modification methyltransferase HpaII complement(2605970..2607247) Flavobacterium psychrophilum JIP02/86 5300131 YP_001297132.1 CDS FP2275 NC_009613.1 2607310 2608308 R Similar to protein of unknown function; hypothetical protein complement(2607310..2608308) Flavobacterium psychrophilum JIP02/86 5300130 YP_001297133.1 CDS FP2276 NC_009613.1 2608308 2608712 R Similar to protein of unknown function of Cytophaga hutchinsonii and Dechloromonas aromatica RCB; hypothetical protein complement(2608308..2608712) Flavobacterium psychrophilum JIP02/86 5300356 YP_001297134.1 CDS darC2 NC_009613.1 2608717 2609178 R Some similarities with DarC protein of Pseudomonasaurantiaca, an acyl carrier protein for alkylresorcinol biosynthesis; flexirubin-type pigment biosynthesis acyl carrier protein DarC1 complement(2608717..2609178) Flavobacterium psychrophilum JIP02/86 5300357 YP_001297135.1 CDS darC1 NC_009613.1 2609189 2609623 R Some similarities with DarC protein of Pseudomonasaurantiaca, an acyl carrier protein for alkylresorcinol biosynthesis; flexirubin-type pigment biosynthesis acyl carrier protein DarC1 complement(2609189..2609623) Flavobacterium psychrophilum JIP02/86 5300728 YP_001297136.1 CDS darB NC_009613.1 2609629 2610762 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(2609629..2610762) Flavobacterium psychrophilum JIP02/86 5300727 YP_001297137.1 CDS darA NC_009613.1 2610780 2611682 R Similar to dialkylrecorsinol condensing enzyme of Pseudomonas aurantiaca, involved in flexirubin-type pigment biosynthesis. Probable transmembrane protein; dialkylrecorsinol condensing enzyme DarA complement(2610780..2611682) Flavobacterium psychrophilum JIP02/86 5300726 YP_001297138.1 CDS FP2281 NC_009613.1 2611693 2613348 R Similar to phytoene dehydrogenase and related proteins COG1233; hypothetical protein complement(2611693..2613348) Flavobacterium psychrophilum JIP02/86 5300725 YP_001297139.1 CDS FP2282 NC_009613.1 2613446 2614336 R Similar to predicted acyltransferase COG4261; acyltransferase complement(2613446..2614336) Flavobacterium psychrophilum JIP02/86 5300358 YP_001297140.1 CDS FP2283 NC_009613.1 2614406 2614657 R Phosphopantetheine-binding domain protein; hypothetical protein complement(2614406..2614657) Flavobacterium psychrophilum JIP02/86 5300344 YP_001297141.1 CDS fabB NC_009613.1 2614650 2615885 R Fatty acid biosynthesis; 3-oxoacyl-(acyl-carrier-protein) synthase I complement(2614650..2615885) Flavobacterium psychrophilum JIP02/86 5300345 YP_001297142.1 CDS FP2285 NC_009613.1 2615896 2616627 R Fatty acid biosynthesis pathway; first reduction step (by similarity); 3-oxoacyl-[acyl-carrier-protein] reductase complement(2615896..2616627) Flavobacterium psychrophilum JIP02/86 5300210 YP_001297143.1 CDS FP2286 NC_009613.1 2616812 2617969 R Probable transmembrane protein; hypothetical protein complement(2616812..2617969) Flavobacterium psychrophilum JIP02/86 5300346 YP_001297144.1 CDS hutH2 NC_009613.1 2618010 2619530 R Histidine degradation; first step; histidine ammonia-lyase complement(2618010..2619530) Flavobacterium psychrophilum JIP02/86 5300347 YP_001297145.1 CDS FP2288 NC_009613.1 2619629 2620882 D Similar to dehydrogenases (flavoproteins) COG0644 and to 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductase COG0654; putative dehydrogenase/oxidoreductase 2619629..2620882 Flavobacterium psychrophilum JIP02/86 5299011 YP_001297146.1 CDS FP2289 NC_009613.1 2621001 2621771 D Similar to Mg-dependent DNase COG0084; TatD-related DNase 2621001..2621771 Flavobacterium psychrophilum JIP02/86 5300348 YP_001297147.1 CDS FP2290 NC_009613.1 2621824 2622957 D Similar to protein of unknown function; hypothetical protein 2621824..2622957 Flavobacterium psychrophilum JIP02/86 5300654 YP_001297148.1 CDS ansA NC_009613.1 2622947 2623975 D Similar L-asparaginase of the CFB phylum COG0252; asparaginase 1 2622947..2623975 Flavobacterium psychrophilum JIP02/86 5300655 YP_001297149.1 CDS FP2293 NC_009613.1 2625708 2626544 D Similar to tetracycline resistance element mobilization regulatory protein RteC of the CFB phylum; hypothetical protein 2625708..2626544 Flavobacterium psychrophilum JIP02/86 5299934 YP_001297150.1 CDS FP2294 NC_009613.1 2626859 2627119 D Similar to protein of unknown function of Bacteroides spp.; hypothetical protein 2626859..2627119 Flavobacterium psychrophilum JIP02/86 5300656 YP_001297151.1 CDS FP2295 NC_009613.1 2627210 2628076 D Some similarities with protein of unknown functionof Cytophaga hutchinsonii; hypothetical protein 2627210..2628076 Flavobacterium psychrophilum JIP02/86 5300657 YP_001297152.1 CDS FP2296 NC_009613.1 2628114 2628719 D Similar to predicted ATPase of Cytophaga hutchinsonii; hypothetical protein 2628114..2628719 Flavobacterium psychrophilum JIP02/86 5300658 YP_001297153.1 CDS FP2297 NC_009613.1 2628738 2629250 R Probable exported protein; putative general secretion pathway protein complement(2628738..2629250) Flavobacterium psychrophilum JIP02/86 5298594 YP_001297154.1 CDS FP2298 NC_009613.1 2629252 2630448 R Probable transmembrane protein; putative general secretion pathway protein complement(2629252..2630448) Flavobacterium psychrophilum JIP02/86 5298595 YP_001297155.1 CDS gspD NC_009613.1 2630448 2632610 R Some similarities with type II secretory pathway, component PulD COG1450; putative general secretion pathway protein D precursor complement(2630448..2632610) Flavobacterium psychrophilum JIP02/86 5298596 YP_001297156.1 CDS gspE NC_009613.1 2632649 2634052 R Similar to type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB COG2804; putative general secretion pathway protein E complement(2632649..2634052) Flavobacterium psychrophilum JIP02/86 5299333 YP_001297157.1 CDS FP2301 NC_009613.1 2634056 2634538 R Probable transmembrane protein; putative general secretion pathway protein complement(2634056..2634538) Flavobacterium psychrophilum JIP02/86 5299334 YP_001297158.1 CDS gspG NC_009613.1 2634538 2634948 R Similar to protein of unknown function of Cytophaga hutchinsonii; putative general secretion pathway protein G precursor complement(2634538..2634948) Flavobacterium psychrophilum JIP02/86 5298597 YP_001297159.1 CDS FP2303 NC_009613.1 2635073 2635642 D Probable OmpH-like outer membrane protein. Some similarities with P18 protein of Flavobacterium psychrophilum; OmpH family outer membrane protein 2635073..2635642 Flavobacterium psychrophilum JIP02/86 5298936 YP_001297160.1 CDS FP2304 NC_009613.1 2635629 2636231 D Similar to protein of unknown function of Cytophaga hutchinsonii; lipoprotein precursor 2635629..2636231 Flavobacterium psychrophilum JIP02/86 5300059 YP_001297161.1 CDS FP2305 NC_009613.1 2636241 2640854 D Some similarities with protein of unknown functionof Cytophaga hutchinsonii. Probable transmembrane potein; hypothetical protein 2636241..2640854 Flavobacterium psychrophilum JIP02/86 5300060 YP_001297162.1 CDS FP2306 NC_009613.1 2641021 2642505 D Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein 2641021..2642505 Flavobacterium psychrophilum JIP02/86 5300061 YP_001297163.1 CDS FP2307 NC_009613.1 2642538 2643539 D Some similarities with proteins of unknown function of Cytophaga hutchinsonii. Probable seceted protein; hypothetical protein 2642538..2643539 Flavobacterium psychrophilum JIP02/86 5300062 YP_001297164.1 CDS FP2308 NC_009613.1 2643549 2648807 D Some similarities with Rhs family protein; hypothetical protein 2643549..2648807 Flavobacterium psychrophilum JIP02/86 5300063 YP_001297165.1 CDS FP2309 NC_009613.1 2648782 2649438 D Some similarities with uncharacterized protein conserved in bacteria COG3236 and to YbiA of Escherichia coli; hypothetical protein 2648782..2649438 Flavobacterium psychrophilum JIP02/86 5298757 YP_001297166.1 CDS FP2310 NC_009613.1 2650622 2654110 D Some weak similarities with proteins of unknown function of the CFB phylum. Putative exported protein; hypothetical protein 2650622..2654110 Flavobacterium psychrophilum JIP02/86 5298758 YP_001297167.1 CDS FP2311 NC_009613.1 2654163 2654894 D Putative lipoprotein; hypothetical protein 2654163..2654894 Flavobacterium psychrophilum JIP02/86 5298759 YP_001297168.1 CDS FP2312 NC_009613.1 2654926 2655861 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable transmembrane protein; hypothetical protein 2654926..2655861 Flavobacterium psychrophilum JIP02/86 5298760 YP_001297169.1 CDS FP2313 NC_009613.1 2655871 2656359 D Similar to protein of unknown function of Cytophaga hutchinsonii. Probable exported protein; hypothetical protein 2655871..2656359 Flavobacterium psychrophilum JIP02/86 5298761 YP_001297170.1 CDS FP2314 NC_009613.1 2656356 2657645 D Probable exported protein similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 2656356..2657645 Flavobacterium psychrophilum JIP02/86 5299049 YP_001297171.1 CDS FP2315 NC_009613.1 2657633 2657965 D Probable exported protein; hypothetical protein 2657633..2657965 Flavobacterium psychrophilum JIP02/86 5299050 YP_001297172.1 CDS FP2316 NC_009613.1 2657958 2658431 D Probable transmembrane protein; hypothetical protein 2657958..2658431 Flavobacterium psychrophilum JIP02/86 5299051 YP_001297173.1 CDS FP2317 NC_009613.1 2658421 2659557 D Similar to type II secretory pathway, component PulF COG1459; hypothetical protein 2658421..2659557 Flavobacterium psychrophilum JIP02/86 5299052 YP_001297174.1 CDS FP2318 NC_009613.1 2660899 2661321 D Similar to protein of unknown function of Flavobacterium psychrophilum; hypothetical protein 2660899..2661321 Flavobacterium psychrophilum JIP02/86 5299053 YP_001297175.1 CDS FP2319 NC_009613.1 2661352 2661531 D Similar to hypothetical protein of Flavobacterium psychrophilum; hypothetical protein 2661352..2661531 Flavobacterium psychrophilum JIP02/86 5298660 YP_001297176.1 CDS FP2320 NC_009613.1 2661625 2661804 R hypothetical protein complement(2661625..2661804) Flavobacterium psychrophilum JIP02/86 5298661 YP_001297177.1 CDS FP2321 NC_009613.1 2661791 2662003 R Some weak similarities with protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2661791..2662003) Flavobacterium psychrophilum JIP02/86 5298662 YP_001297178.1 CDS FP2322 NC_009613.1 2662014 2662409 R Highly similar to protein of unknown function of Flavobacterium psychrophilum and some similarities with proteins of unknown function of Desulfotalea psychrophila andPhotobacterium profundum; hypothetical protein complement(2662014..2662409) Flavobacterium psychrophilum JIP02/86 5298663 YP_001297179.1 CDS FP2323 NC_009613.1 2662411 2663166 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2662411..2663166) Flavobacterium psychrophilum JIP02/86 5298664 YP_001297180.1 CDS FP2324 NC_009613.1 2663437 2663640 D Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein 2663437..2663640 Flavobacterium psychrophilum JIP02/86 5299532 YP_001297181.1 CDS pcd NC_009613.1 2665112 2666665 D Lysine metabolism; piperideine-6-carboxylate dehydrogenase 2665112..2666665 Flavobacterium psychrophilum JIP02/86 5299533 YP_001297182.1 CDS thiL NC_009613.1 2667395 2668441 R Thiamine metabolism; thiamine-phosphate kinase complement(2667395..2668441) Flavobacterium psychrophilum JIP02/86 5298613 YP_001297183.1 CDS FP2327 NC_009613.1 2668992 2670146 R Fatty acid biosynthesis; 3-oxoacyl-(acyl-carrier-protein) synthase complement(2668992..2670146) Flavobacterium psychrophilum JIP02/86 5299724 YP_001297184.1 CDS bioA NC_009613.1 2670244 2671515 R Biotin metabolism; adenosylmethionine--8-amino-7- oxononanoatetransaminase complement(2670244..2671515) Flavobacterium psychrophilum JIP02/86 5299534 YP_001297185.1 CDS bioD NC_009613.1 2671589 2672206 R Cofactor biosynthesis; biotin biosynthesis; biotinfrom 6-carboxyhexanoyl-CoA: step 3; dethiobiotin synthetase complement(2671589..2672206) Flavobacterium psychrophilum JIP02/86 5299274 YP_001297186.1 CDS lpxB NC_009613.1 2672307 2673437 R Lipid A biosynthesis; fifth step; Lipid-A-disaccharide synthase complement(2672307..2673437) Flavobacterium psychrophilum JIP02/86 5299276 YP_001297187.1 CDS FP2331 NC_009613.1 2673452 2673724 R Probable transmembrane protein; hypothetical protein complement(2673452..2673724) Flavobacterium psychrophilum JIP02/86 5300326 YP_001297188.1 CDS surE NC_009613.1 2673729 2674502 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2673729..2674502) Flavobacterium psychrophilum JIP02/86 5299535 YP_001297189.1 CDS FP2333 NC_009613.1 2674654 2676831 D Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses (By similarity); peptidase 2674654..2676831 Flavobacterium psychrophilum JIP02/86 5299866 YP_001297190.1 CDS FP2334 NC_009613.1 2676950 2678983 D Some similarities with competence protein and withpredicted membrane metal-binding protein COG0658. Probable transmembrane protein; hypothetical protein 2676950..2678983 Flavobacterium psychrophilum JIP02/86 5299536 YP_001297191.1 CDS FP2335 NC_009613.1 2678986 2679558 R Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein complement(2678986..2679558) Flavobacterium psychrophilum JIP02/86 5299489 YP_001297192.1 CDS FP2336 NC_009613.1 2679618 2680076 R Thioredoxins are small disulphide-containing redoxproteins that serves as a general protein disulphide oxidoreductase; thioredoxin family protein complement(2679618..2680076) Flavobacterium psychrophilum JIP02/86 5299490 YP_001297193.1 CDS FP2337 NC_009613.1 2680122 2681606 R Proton-dependent Oligopeptide Transporter (POT) family protein. TC 2.A.17.1.1; proton-dependent di-tripeptide transporter complement(2680122..2681606) Flavobacterium psychrophilum JIP02/86 5299491 YP_001297194.1 CDS FP2338 NC_009613.1 2681683 2683359 R Proton-dependent Oligopeptide Transporter (POT) family protein. TC 2.A.17.1.1; proton-dependent di-tripeptide transporter complement(2681683..2683359) Flavobacterium psychrophilum JIP02/86 5299492 YP_001297195.1 CDS pepX1 NC_009613.1 2683386 2685551 R Similar to dipeptidyl peptidase IV of Flavobacterium meningosepticum. Belongs to peptidase family S15; Xaa-Pro dipeptidyl-peptidase complement(2683386..2685551) Flavobacterium psychrophilum JIP02/86 5299493 YP_001297196.1 CDS FP2340 NC_009613.1 2685707 2686078 D hypothetical protein 2685707..2686078 Flavobacterium psychrophilum JIP02/86 5300485 YP_001297197.1 CDS FP2341 NC_009613.1 2686128 2687444 D Converts HMG-CoA to mevalonate (by similarity); hydroxymethylglutaryl-coenzyme A reductase 2686128..2687444 Flavobacterium psychrophilum JIP02/86 5300400 YP_001297198.1 CDS FP2342 NC_009613.1 2687449 2688360 D Weakly similar to mevalonate kinase COG1577; hypothetical protein 2687449..2688360 Flavobacterium psychrophilum JIP02/86 5300401 YP_001297199.1 CDS FP2343 NC_009613.1 2688983 2689345 R hypothetical protein complement(2688983..2689345) Flavobacterium psychrophilum JIP02/86 5300402 YP_001297200.1 CDS FP2344 NC_009613.1 2689342 2689575 R hypothetical protein complement(2689342..2689575) Flavobacterium psychrophilum JIP02/86 5300403 YP_001297201.1 CDS prc NC_009613.1 2690672 2692309 R The enzyme shows specific recognition of a C- terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr, and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. A typical cleavage is -Ala- Ala-|-Arg-Ala-Ala-Lys-Glu-Asn-Tyr-Ala-Leu-Ala-Ala (by similarity); carboxy-terminal processing protease precursor complement(2690672..2692309) Flavobacterium psychrophilum JIP02/86 5300422 YP_001297202.1 CDS FP2346 NC_009613.1 2692375 2692773 R Similar to lactoylglutathione lyase and related lyases COG0346; glyoxalase family protein complement(2692375..2692773) Flavobacterium psychrophilum JIP02/86 5299101 YP_001297203.1 CDS mtgA NC_009613.1 2692777 2693520 R Cell wall formation. Peptidoglycan biosynthesis; final stages (by similarity); monofunctional biosynthetic peptidoglycan transglycosylase complement(2692777..2693520) Flavobacterium psychrophilum JIP02/86 5300423 YP_001297204.1 CDS FP2348 NC_009613.1 2693520 2694632 R Similar to glycine/D-amino acid oxidases (deaminating) COG0665; oxidoreductase complement(2693520..2694632) Flavobacterium psychrophilum JIP02/86 5299864 YP_001297205.1 CDS FP2349 NC_009613.1 2694629 2695774 R Similar to Porphyromonas gingivalis sensor histidine kinase; two-component system sensor histidine kinase complement(2694629..2695774) Flavobacterium psychrophilum JIP02/86 5300424 YP_001297206.1 CDS FP2350 NC_009613.1 2695878 2696753 D Similar to conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family COG1853; hypothetical protein 2695878..2696753 Flavobacterium psychrophilum JIP02/86 5300425 YP_001297207.1 CDS FP2351 NC_009613.1 2696757 2697134 D Similar to protein of unknown function of the CFB phylum; hypothetical protein 2696757..2697134 Flavobacterium psychrophilum JIP02/86 5300426 YP_001297208.1 CDS aat NC_009613.1 2697265 2697900 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 2697265..2697900 Flavobacterium psychrophilum JIP02/86 5298522 YP_001297209.1 CDS FP2353 NC_009613.1 2697913 2698689 R Similar to protein of unknown function. Probable transmembrane protein; membrane-associated esterase complement(2697913..2698689) Flavobacterium psychrophilum JIP02/86 5299584 YP_001297210.1 CDS tag NC_009613.1 2698714 2699268 R Hydrolysis of the deoxyribose N-glycosidic bond toexcise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions (by similarity); DNA-3-methyladenine glycosylase I complement(2698714..2699268) Flavobacterium psychrophilum JIP02/86 5298523 YP_001297211.1 CDS FP2355 NC_009613.1 2699363 2699977 D Some similarities with thiol-disulfide isomerase and thioredoxins COG0526; hypothetical protein 2699363..2699977 Flavobacterium psychrophilum JIP02/86 5299867 YP_001297212.1 CDS FP2356 NC_009613.1 2699974 2700408 R hypothetical protein complement(2699974..2700408) Flavobacterium psychrophilum JIP02/86 5298524 YP_001297213.1 CDS truB NC_009613.1 2700491 2701195 R Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs (by similarity); tRNA pseudouridine synthase B complement(2700491..2701195) Flavobacterium psychrophilum JIP02/86 5298525 YP_001297214.1 CDS uppP NC_009613.1 2701195 2701980 R Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin (by similarity); undecaprenyl-diphosphatase complement(2701195..2701980) Flavobacterium psychrophilum JIP02/86 5299823 YP_001297215.1 CDS FP2359 NC_009613.1 2702034 2702273 R Similar to Fjo13 protein of Flavobacterium johnsoniae; hypothetical protein complement(2702034..2702273) Flavobacterium psychrophilum JIP02/86 5299729 YP_001297216.1 CDS ftsX NC_009613.1 2702297 2703172 R Similar to FtsX protein of Flavobacterium johnsoniae involved in gliding motility and cell division; cell division protein FtsX complement(2702297..2703172) Flavobacterium psychrophilum JIP02/86 5298526 YP_001297217.1 CDS FP2361 NC_009613.1 2703305 2704306 D Probable transmembrane protein; hypothetical protein 2703305..2704306 Flavobacterium psychrophilum JIP02/86 5300234 YP_001297218.1 CDS FP2362 NC_009613.1 2704311 2705042 D Probable transmembrane protein; membrane-associated phospholipid phosphatase 2704311..2705042 Flavobacterium psychrophilum JIP02/86 5299630 YP_001297219.1 CDS leuS NC_009613.1 2705207 2708095 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2705207..2708095 Flavobacterium psychrophilum JIP02/86 5299631 YP_001297220.1 CDS FP2364 NC_009613.1 2708218 2708901 D Similar to predicted Zn-dependent protease COG2738. Probable transmembrane protein; M48 family membrane-associated zinc metalloprotease precursor 2708218..2708901 Flavobacterium psychrophilum JIP02/86 5300117 YP_001297221.1 CDS FP2365 NC_009613.1 2709117 2709536 R Some similarities with ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases COG2146; hypothetical protein complement(2709117..2709536) Flavobacterium psychrophilum JIP02/86 5299632 YP_001297222.1 CDS greA NC_009613.1 2709701 2710177 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2709701..2710177 Flavobacterium psychrophilum JIP02/86 5299633 YP_001297223.1 CDS FP2367 NC_009613.1 2710180 2710569 D Similar to diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases COG0537; HIT family protein 2710180..2710569 Flavobacterium psychrophilum JIP02/86 5298798 YP_001297224.1 CDS pop NC_009613.1 2710633 2712534 D Similar to prolyl oligopeptidase of Flavobacteriumcolumnare; prolyl oligopeptidase family protein 2710633..2712534 Flavobacterium psychrophilum JIP02/86 5299634 YP_001297225.1 CDS pepC NC_009613.1 2712738 2713925 D Aminopeptidase C inactivates bleomycin B2 (a cytotoxic glycometallopeptide) by hydrolysis of a carboxyamide bond of beta-aminoalanine, but also shows general aminopeptidase activity. The specificity varies somewhat with source, but amino acid arylamides of Met, Leu and Ala are preferred (by similarity); Bleomycin hydrolase 2712738..2713925 Flavobacterium psychrophilum JIP02/86 5300178 YP_001297226.1 CDS FP2370 NC_009613.1 2713993 2716191 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane receptorprecursor complement(2713993..2716191) Flavobacterium psychrophilum JIP02/86 5299505 YP_001297227.1 CDS lpxH NC_009613.1 2716474 2717226 R Lipid A biosynthesis; fourth step; UDP-2,3-diacylglucosamine hydrolase complement(2716474..2717226) Flavobacterium psychrophilum JIP02/86 5299039 YP_001297228.1 CDS asnC NC_009613.1 2717303 2717773 R regulatory protein AsnC complement(2717303..2717773) Flavobacterium psychrophilum JIP02/86 5300329 YP_001297229.1 CDS FP2373 NC_009613.1 2717923 2719293 R Similar to saccharopine dehydrogenase and related protein COG1748. Lysine metabolism; saccharopine reductase complement(2717923..2719293) Flavobacterium psychrophilum JIP02/86 5298918 YP_001297230.1 CDS FP2374 NC_009613.1 2719378 2719764 D Similar to uncharacterized small membrane protein COG2363; hypothetical protein 2719378..2719764 Flavobacterium psychrophilum JIP02/86 5299040 YP_001297231.1 CDS pckA NC_009613.1 2719834 2721459 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2719834..2721459 Flavobacterium psychrophilum JIP02/86 5299041 YP_001297232.1 CDS rnpA NC_009613.1 2721498 2721893 R Endonucleolytic cleavage of RNA, removing 5'- extranucleotides from tRNA precursor (by similarity); ribonuclease P protein component complement(2721498..2721893) Flavobacterium psychrophilum JIP02/86 5298614 YP_001297233.1 CDS accC NC_009613.1 2722175 2723521 R Long-chain fatty acid biosynthesis; first step; biotin carboxylase complement(2722175..2723521) Flavobacterium psychrophilum JIP02/86 5299769 YP_001297234.1 CDS accB NC_009613.1 2723610 2724089 R Long-chain fatty acid biosynthesis; first step. This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA (By similarity); Acetyl-CoA carboxylase, biotin carboxyl carrierprotein complement(2723610..2724089) Flavobacterium psychrophilum JIP02/86 5299136 YP_001297235.1 CDS fabH3 NC_009613.1 2724178 2725179 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(2724178..2725179) Flavobacterium psychrophilum JIP02/86 5299135 YP_001297236.1 CDS rpmF NC_009613.1 2725339 2725533 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2725339..2725533) Flavobacterium psychrophilum JIP02/86 5298891 YP_001297237.1 CDS FP2381 NC_009613.1 2725543 2726106 R Similar to protein of unknown function of the CFB phylum. Weakly similar to predicted metal-binding, possibly nucleic acid-binding protein COG1399; hypothetical protein complement(2725543..2726106) Flavobacterium psychrophilum JIP02/86 5299370 YP_001297238.1 CDS pdxA NC_009613.1 2726191 2727240 R De novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. Catalyzes the NAD-dependent oxidation of 4-(phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo- 4-(phosphohydroxy)butyric acid which spontaneously decarboxylate to form 1-amino-3-(phosphohydroxy)propan-2- one (3-amino-2-oxopropyl phosphate) (by similarity); 4-hydroxythreonine-4-phosphate dehydrogenase complement(2726191..2727240) Flavobacterium psychrophilum JIP02/86 5299042 YP_001297239.1 CDS ribE NC_009613.1 2727298 2727894 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2727298..2727894 Flavobacterium psychrophilum JIP02/86 5299094 YP_001297240.1 CDS FP2384 NC_009613.1 2727975 2728871 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2727975..2728871) Flavobacterium psychrophilum JIP02/86 5299298 YP_001297241.1 CDS FP2385 NC_009613.1 2728927 2729433 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2728927..2729433) Flavobacterium psychrophilum JIP02/86 5299043 YP_001297242.1 CDS FP2386 NC_009613.1 2729435 2729758 R Similar to predicted metal-sulfur cluster biosynthetic enzyme COG2151; hypothetical protein complement(2729435..2729758) Flavobacterium psychrophilum JIP02/86 5298807 YP_001297243.1 CDS sufE NC_009613.1 2729927 2730346 R Biosynthesis of Fe-S cluster; first step. Participates in cysteine desulfuration mediated by sufS; cysteine desulfuration protein, SufE complement(2729927..2730346) Flavobacterium psychrophilum JIP02/86 5298808 YP_001297244.1 CDS FP2388 NC_009613.1 2730346 2730861 R hypothetical protein complement(2730346..2730861) Flavobacterium psychrophilum JIP02/86 5300632 YP_001297245.1 CDS sufS NC_009613.1 2731019 2732233 R Biosynthesis of Fe-S cluster; first step; cysteine desulfurase, SufS complement(2731019..2732233) Flavobacterium psychrophilum JIP02/86 5298809 YP_001297246.1 CDS FP2390 NC_009613.1 2732432 2733778 D Similar to beta-lactamase class C and other penicillin binding proteins COG1680. Probably involved in peptidoglycan modification (by similarity); penicillin-binding protein 2732432..2733778 Flavobacterium psychrophilum JIP02/86 5300633 YP_001297247.1 CDS sufD NC_009613.1 2734178 2735494 R Sulfur transfer pathway for Fe-S cluster assembly; Fe-S assembly protein, SufD complement(2734178..2735494) Flavobacterium psychrophilum JIP02/86 5298810 YP_001297248.1 CDS sufC NC_009613.1 2735496 2736245 R Sulfur transfer pathway for Fe-S cluster assembly; Fe-S assembly ATPase, SufC complement(2735496..2736245) Flavobacterium psychrophilum JIP02/86 5300631 YP_001297249.1 CDS sufB NC_009613.1 2736282 2737730 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(2736282..2737730) Flavobacterium psychrophilum JIP02/86 5300630 YP_001297250.1 CDS sufA NC_009613.1 2737813 2738142 R Sulfur transfer pathway for Fe-S cluster assembly; scaffold protein for Fe-S assembly, SufA complement(2737813..2738142) Flavobacterium psychrophilum JIP02/86 5299187 YP_001297251.1 CDS FP2395 NC_009613.1 2738401 2739261 D Similar to Zn-dependent hydrolases, including glyoxylases COG0491; putative metal-dependent hydrolase 2738401..2739261 Flavobacterium psychrophilum JIP02/86 5299186 YP_001297252.1 CDS FP2396 NC_009613.1 2739332 2740936 D Some similarities with subtilisin-like serine proteases COG1404. Probable exported protein; serine endopeptidase 2739332..2740936 Flavobacterium psychrophilum JIP02/86 5298811 YP_001297253.1 CDS FP2397 NC_009613.1 2741018 2742889 D Some similarities with aminopeptidase N COG0308; M1 family aminopeptidase 2741018..2742889 Flavobacterium psychrophilum JIP02/86 5298984 YP_001297254.1 CDS FP2398 NC_009613.1 2742896 2743636 D hypothetical protein 2742896..2743636 Flavobacterium psychrophilum JIP02/86 5298985 YP_001297255.1 CDS FP2399 NC_009613.1 2743633 2743962 R Ferredoxin are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Although the function of this ferredoxin is unknown it is probable that it has a role as a cellular electron transfer protein. Involved in the in vivo assembly of the Fe-S clustersin a wide variety of iron-sulfur proteins (by similarity); ferredoxin complement(2743633..2743962) Flavobacterium psychrophilum JIP02/86 5298986 YP_001297256.1 CDS FP2401 NC_009613.1 2744209 2747673 R Resistance-Nodulation-Cell Division (RND) Superfamily. Probable transmembrane protein. TC 2.A.6.2.Z; multidrug resistance protein precursor AcrB/AcrD/AcrF family protein complement(2744209..2747673) Flavobacterium psychrophilum JIP02/86 5299748 YP_001297257.1 CDS FP2402 NC_009613.1 2747704 2748846 R Membrane Fusion Protein (MFP) Family. Probable lipoprotein. TC =8.A.1.Y.Z; membrane fusion efflux protein precursor complement(2747704..2748846) Flavobacterium psychrophilum JIP02/86 5298988 YP_001297258.1 CDS FP2403 NC_009613.1 2748865 2750208 R Outer Membrane Factor (OMF) Family. TC 1.B.17.Y.Z; outer membrane efflux protein precursor complement(2748865..2750208) Flavobacterium psychrophilum JIP02/86 5298598 YP_001297259.1 CDS FP2404 NC_009613.1 2750219 2750812 R Similar to transcriptional regulator COG1309; TetR family transcriptional regulator complement(2750219..2750812) Flavobacterium psychrophilum JIP02/86 5298599 YP_001297260.1 CDS FP2405 NC_009613.1 2751034 2752008 D Similar to geranylgeranyl pyrophosphate synthase COG0142; polyprenyl synthetase 2751034..2752008 Flavobacterium psychrophilum JIP02/86 5298600 YP_001297261.1 CDS FP2406 NC_009613.1 2752076 2752429 D hypothetical protein 2752076..2752429 Flavobacterium psychrophilum JIP02/86 5298601 YP_001297262.1 CDS FP2407 NC_009613.1 2752426 2752998 R hypothetical protein complement(2752426..2752998) Flavobacterium psychrophilum JIP02/86 5298602 YP_001297263.1 CDS sucA NC_009613.1 2753083 2755854 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 2753083..2755854 Flavobacterium psychrophilum JIP02/86 5299160 YP_001297264.1 CDS sucB NC_009613.1 2756029 2757240 D The 2-oxoglutarate dehydrogenase complex catalyzesthe overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase(E3). Tricarboxylic acid cycle (by similarity); dihydrolipoyllysine-residue succinyltransferasecomponent of 2-oxoglutarate dehydrogenase complex 2756029..2757240 Flavobacterium psychrophilum JIP02/86 5300594 YP_001297265.1 CDS FP2410 NC_009613.1 2757326 2758537 D Probable Drug:H+ Antiporter-1 (12 Spanner) (DHA1) Family Protein. TC : 2.A.1.2.Z; major facilitator superfamily permease 2757326..2758537 Flavobacterium psychrophilum JIP02/86 5299183 YP_001297266.1 CDS FP2411 NC_009613.1 2759105 2760979 R Similar to immunogenic 75 kDa protein PG4 of Porphyromonas gingivalis; OmpA family outer membrane protein complement(2759105..2760979) Flavobacterium psychrophilum JIP02/86 5299161 YP_001297267.1 CDS FP2412 NC_009613.1 2760997 2761914 R Similar to protein of unknown function of Cytophaga hutchinsonii and Porphyromonas gingivalis; hypothetical protein complement(2760997..2761914) Flavobacterium psychrophilum JIP02/86 5299162 YP_001297268.1 CDS claF NC_009613.1 2761986 2768012 R Probable exported protein; hypothetical protein complement(2761986..2768012) Flavobacterium psychrophilum JIP02/86 5299163 YP_001297269.1 CDS hflX NC_009613.1 2768185 2769426 D GTPase of unknown physiological role (by similarity); GTP-binding protein HflX 2768185..2769426 Flavobacterium psychrophilum JIP02/86 5299510 YP_001297270.1 CDS FP2415 NC_009613.1 2769496 2770752 R ABC transporter, permease (IM), o228-family, import of unknown substrat, TC 3.A.1.Y.Z; ABC transporter permease complement(2769496..2770752) Flavobacterium psychrophilum JIP02/86 5299620 YP_001297271.1 CDS purH NC_009613.1 2770909 2772441 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2770909..2772441 Flavobacterium psychrophilum JIP02/86 5299155 YP_001297272.1 CDS mreB NC_009613.1 2772495 2773523 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2772495..2773523 Flavobacterium psychrophilum JIP02/86 5300022 YP_001297273.1 CDS mreC NC_009613.1 2773574 2774362 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2773574..2774362 Flavobacterium psychrophilum JIP02/86 5299599 YP_001297274.1 CDS FP2419 NC_009613.1 2774355 2774861 D Similar to protein of unknown function of the CFB phylum. Probable transmembrane protein; hypothetical protein 2774355..2774861 Flavobacterium psychrophilum JIP02/86 5299600 YP_001297275.1 CDS pbpA NC_009613.1 2774858 2776798 D penicillin-binding protein 2 2774858..2776798 Flavobacterium psychrophilum JIP02/86 5299156 YP_001297276.1 CDS rodA NC_009613.1 2776799 2778055 D rod shape-determining protein RodA 2776799..2778055 Flavobacterium psychrophilum JIP02/86 5298858 YP_001297277.1 CDS nucA NC_009613.1 2778203 2779012 R Similar to DNA/RNA endonuclease G, NUC1 COG1864; DNA/RNA non-specific endonuclease complement(2778203..2779012) Flavobacterium psychrophilum JIP02/86 5299773 YP_001297278.1 CDS FP2423 NC_009613.1 2779097 2779651 D High lysine content protein; hypothetical protein 2779097..2779651 Flavobacterium psychrophilum JIP02/86 5300323 YP_001297279.1 CDS FP2424 NC_009613.1 2779857 2780264 R Some weak similarities with proteins of unknown function; lipoprotein precursor complement(2779857..2780264) Flavobacterium psychrophilum JIP02/86 5299157 YP_001297280.1 CDS FP2425 NC_009613.1 2780312 2781427 R Similar to putative membrane-associated lipoprotein of Ornithobacterium rhinotracheale; lipoprotein precursor complement(2780312..2781427) Flavobacterium psychrophilum JIP02/86 5299158 YP_001297281.1 CDS FP2426 NC_009613.1 2781903 2783504 R Some similarities with protein of unknown function. Putative exported protein; hypothetical protein complement(2781903..2783504) Flavobacterium psychrophilum JIP02/86 5299159 YP_001297282.1 CDS FP2427 NC_009613.1 2783592 2784275 R Similar to predicted amidophosphoribosyltransferases COG1040; putative amidophosphoribosyltransferase complement(2783592..2784275) Flavobacterium psychrophilum JIP02/86 5299078 YP_001297283.1 CDS FP2428 NC_009613.1 2784350 2785204 D Probable exported protein similar to protein of unknown function of Porphyromonas gingivalis and Bacteroidesfragilis; hypothetical protein 2784350..2785204 Flavobacterium psychrophilum JIP02/86 5299079 YP_001297284.1 CDS glyS NC_009613.1 2785324 2786865 D Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 2785324..2786865 Flavobacterium psychrophilum JIP02/86 5299080 YP_001297285.1 CDS FP2430 NC_009613.1 2787252 2789357 R Some similarities with PpiC-type peptidyl-prolyl cis-trans isomerase; hypothetical protein complement(2787252..2789357) Flavobacterium psychrophilum JIP02/86 5298792 YP_001297286.1 CDS FP2431 NC_009613.1 2789453 2789647 R Probable transmembrane protein; hypothetical protein complement(2789453..2789647) Flavobacterium psychrophilum JIP02/86 5299081 YP_001297287.1 CDS FP2432 NC_009613.1 2789662 2790219 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2789662..2790219) Flavobacterium psychrophilum JIP02/86 5299082 YP_001297288.1 CDS FP2433 NC_009613.1 2790225 2791439 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2790225..2791439) Flavobacterium psychrophilum JIP02/86 5300381 YP_001297289.1 CDS FP2434 NC_009613.1 2791436 2792161 R type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase complement(2791436..2792161) Flavobacterium psychrophilum JIP02/86 5300382 YP_001297290.1 CDS FP2436 NC_009613.1 2793770 2794084 R hypothetical protein complement(2793770..2794084) Flavobacterium psychrophilum JIP02/86 5300011 YP_001297291.1 CDS smf NC_009613.1 2794327 2795427 R Predicted Rossmann-fold nucleotide-binding proteininvolved in DNA uptake; protein Smf of unknown function complement(2794327..2795427) Flavobacterium psychrophilum JIP02/86 5300384 YP_001297292.1 CDS FP2438 NC_009613.1 2795533 2796486 D Some similarities with protein of unknown functionof the CFB phylum; hypothetical protein 2795533..2796486 Flavobacterium psychrophilum JIP02/86 5298529 YP_001297293.1 CDS FP2439 NC_009613.1 2796586 2797095 D Similar to acyl-CoA hydrolase COG1607; Acyl-CoA hydrolase family protein 2796586..2797095 Flavobacterium psychrophilum JIP02/86 5300385 YP_001297294.1 CDS FP2440 NC_009613.1 2797417 2798631 R Similar to putative peptidase of the CFB phylum; M23/M37 family peptidase complement(2797417..2798631) Flavobacterium psychrophilum JIP02/86 5299168 YP_001297295.1 CDS FP2441 NC_009613.1 2798652 2799425 R Similar to protein of unknown function of Cytophaga hutchinsonii; hypothetical protein complement(2798652..2799425) Flavobacterium psychrophilum JIP02/86 5299169 YP_001297296.1 CDS FP2442 NC_009613.1 2799425 2800768 R Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(2799425..2800768) Flavobacterium psychrophilum JIP02/86 5299170 YP_001297297.1 CDS FP2443 NC_009613.1 2801211 2802155 R esterase/lipase/thioesterase family protein complement(2801211..2802155) Flavobacterium psychrophilum JIP02/86 5299171 YP_001297298.1 CDS FP2444 NC_009613.1 2802957 2803541 R hypothetical protein complement(2802957..2803541) Flavobacterium psychrophilum JIP02/86 5299172 YP_001297299.1 CDS FP2445 NC_009613.1 2803944 2804639 R hypothetical protein complement(2803944..2804639) Flavobacterium psychrophilum JIP02/86 5299435 YP_001297300.1 CDS yoeB NC_009613.1 2804825 2805082 R Similar to YoeB protein of E. coli. Part of the toxin-antitoxin system yoeB/yefM. When overproduced in wild-type cells, inhibits bacterial growth and translation by cleavage of mRNA molecules while it has a weak effect on colony forming ability. Overproduction of Lon protease specifically activates yoeB-dependent mRNA cleavage (by similarity); toxin YoeB complement(2804825..2805082) Flavobacterium psychrophilum JIP02/86 5299436 YP_001297301.1 CDS FP2447 NC_009613.1 2805084 2805338 R Similar to protein of unknown function of Agrobacterium tumefaciens, Fusobacterium nucleatum and Francisellanovicida; hypothetical protein complement(2805084..2805338) Flavobacterium psychrophilum JIP02/86 5299023 YP_001297302.1 CDS FP2448 NC_009613.1 2805741 2806373 R Probable transmembrane protein; hypothetical protein complement(2805741..2806373) Flavobacterium psychrophilum JIP02/86 5299437 YP_001297303.1 CDS FP2449 NC_009613.1 2806465 2807475 R sugar phosphate nucleotydyl transferase complement(2806465..2807475) Flavobacterium psychrophilum JIP02/86 5299438 YP_001297304.1 CDS dut NC_009613.1 2807533 2807967 R catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2807533..2807967) Flavobacterium psychrophilum JIP02/86 5299439 YP_001297305.1 CDS FP2451 NC_009613.1 2808133 2809608 R Similar to membrane protein involved in the exportof O-antigen and teichoic acid COG2244; polysaccharide biosynthesis protein complement(2808133..2809608) Flavobacterium psychrophilum JIP02/86 5300857 YP_001297306.1 CDS FP2452 NC_009613.1 2810479 2811621 R Similar to uncharacterized iron-regulated membraneprotein COG3182; transmembrane protein complement(2810479..2811621) Flavobacterium psychrophilum JIP02/86 5298812 YP_001297307.1 CDS FP2453 NC_009613.1 2811704 2812894 R Probable major facilitator superfamily (MFS) permease. TC 2.A.1.Y.Z; major facilitator superfamily permease complement(2811704..2812894) Flavobacterium psychrophilum JIP02/86 5298813 YP_001297308.1 CDS FP2454 NC_009613.1 2812896 2814626 R Probably involved in siderophore biosynthesis; putative siderophore biosynthesis protein complement(2812896..2814626) Flavobacterium psychrophilum JIP02/86 5298814 YP_001297309.1 CDS FP2455 NC_009613.1 2814646 2815632 R Similar to D-alanine-D-alanine ligase and related ATP-grasp enzyme COG1181; hypothetical protein complement(2814646..2815632) Flavobacterium psychrophilum JIP02/86 5298815 YP_001297310.1 CDS FP2456 NC_009613.1 2815692 2818016 R Outer Membrane Receptor (OMR) Family protein.TC 1.B.14.Y.Z; TonB-dependent outer membrane ferrichrome-iron receptor precursor complement(2815692..2818016) Flavobacterium psychrophilum JIP02/86 5298816 YP_001297311.1 CDS atpG NC_009613.1 2818465 2819325 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma subunit is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex (by similarity); ATP synthase gamma subunit complement(2818465..2819325) Flavobacterium psychrophilum JIP02/86 5299566 YP_001297312.1 CDS atpA NC_009613.1 2819431 2821008 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2819431..2821008) Flavobacterium psychrophilum JIP02/86 5300218 YP_001297313.1 CDS atpH NC_009613.1 2821023 2821556 R This protein seems to be part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) into CF(1) or is implicated in proton conduction (by similarity); ATP synthase delta subunit complement(2821023..2821556) Flavobacterium psychrophilum JIP02/86 5298921 YP_001297314.1 CDS atpF NC_009613.1 2821559 2822059 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(2821559..2822059) Flavobacterium psychrophilum JIP02/86 5300219 YP_001297315.1 CDS atpE NC_009613.1 2822146 2822343 R This is one of the three subunit of the nonenzymatic component (CF(0) subunit) of the ATPase complex (by similarity); ATP synthase C subunit complement(2822146..2822343) Flavobacterium psychrophilum JIP02/86 5300217 YP_001297316.1 CDS atpB NC_009613.1 2822379 2823548 R Key component of the proton channel; it may play adirect role in the translocation of protons across the membrane (by similarity); ATP synthase A subunit complement(2822379..2823548) Flavobacterium psychrophilum JIP02/86 5298925 YP_001297317.1 CDS FP2463 NC_009613.1 2823840 2825210 D Similar to alpha-tubulin suppressor and related RCC1 domain-containing proteins COG5184; RCC1 repeat-containing protein 2823840..2825210 Flavobacterium psychrophilum JIP02/86 5298922 YP_001297318.1 CDS FP2464 NC_009613.1 2825207 2825605 R Probable transmembrane protein; hypothetical protein complement(2825207..2825605) Flavobacterium psychrophilum JIP02/86 5299567 YP_001297319.1 CDS FP2465 NC_009613.1 2825608 2825835 R Probable transmembrane protein; hypothetical protein complement(2825608..2825835) Flavobacterium psychrophilum JIP02/86 5299568 YP_001297320.1 CDS FP2466 NC_009613.1 2825828 2826211 R Similar integral membrane protein CcmA involved incell shape determination COG1664; hypothetical protein complement(2825828..2826211) Flavobacterium psychrophilum JIP02/86 5299569 YP_001297321.1 CDS FP2467 NC_009613.1 2826219 2828810 R Contains tetratrico peptide repeat (TPR), a structural motif that mediates protein\u2013protein interactions and the assembly of multiprotein complexes; hypothetical protein complement(2826219..2828810) Flavobacterium psychrophilum JIP02/86 5299570 YP_001297322.1 CDS paaE NC_009613.1 2828976 2830028 D May be part of a multicomponent oxygenase involvedin phenylacetyl-CoA hydroxylation (by similarity); phenylacetic acid degradation NADH oxidoreductase PaaE 2828976..2830028 Flavobacterium psychrophilum JIP02/86 5300478 YP_001297323.1 CDS FP2469 NC_009613.1 2830338 2831381 R Similar to ADP-heptose:LPS heptosyltransferase COG0859; heptosyltransferase involved in lipopolysaccharide core biosynthesis complement(2830338..2831381) Flavobacterium psychrophilum JIP02/86 5300164 YP_001297324.1 CDS FP2470 NC_009613.1 2831430 2832035 R Similar to protein of unknown function of Leptospira interrogans; hypothetical protein complement(2831430..2832035) Flavobacterium psychrophilum JIP02/86 5300479 YP_001297325.1 CDS upp NC_009613.1 2832113 2832766 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2832113..2832766 Flavobacterium psychrophilum JIP02/86 5300480 YP_001297326.1 CDS FP2472 NC_009613.1 2832761 2833693 R Probable transmembrane protein; hypothetical protein complement(2832761..2833693) Flavobacterium psychrophilum JIP02/86 5299728 YP_001297327.1 CDS purD NC_009613.1 2833963 2835237 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(2833963..2835237) Flavobacterium psychrophilum JIP02/86 5300481 YP_001297328.1 CDS capK NC_009613.1 2835599 2836933 D putative capsular polysaccharide biosynthesis protein CapK 2835599..2836933 Flavobacterium psychrophilum JIP02/86 5298681 YP_001297329.1 CDS FP2475 NC_009613.1 2836905 2837678 R Similar to glycosyltransferases COG0463 COG1215 COG1216 and to putative teichuronic acid biosynthesis glycosyl transferase TuaG of B. subtilis; glycosyl transferase, group 2 family protein complement(2836905..2837678) Flavobacterium psychrophilum JIP02/86 5300198 YP_001297330.1 CDS wcaJ NC_009613.1 2837680 2839038 R Similar to putative colanic biosynthesis UDP- glucose lipid carrier transferase WcaJ of Escherichia coli; putative colanic biosynthesis UDP-glucose lipidcarrier transferase complement(2837680..2839038) Flavobacterium psychrophilum JIP02/86 5300482 YP_001297331.1 CDS FP2477 NC_009613.1 2839045 2840028 R nucleoside-diphosphate-sugar epimerase complement(2839045..2840028) Flavobacterium psychrophilum JIP02/86 5300628 YP_001297332.1 CDS rmlD NC_009613.1 2840031 2840885 R Lipopolysaccharide O-antigen biosynthesis; dTDP-L- rhamnose biosynthesis; fourth and last step; dTDP-4-dehydrorhamnose reductase complement(2840031..2840885) Flavobacterium psychrophilum JIP02/86 5300859 YP_001297333.1 CDS rmlC NC_009613.1 2840879 2841430 R Lipopolysaccharide O-antigen biosynthesis; dTDP-L- rhamnose biosynthesis; third step; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2840879..2841430) Flavobacterium psychrophilum JIP02/86 5299738 YP_001297334.1 CDS FP2480 NC_009613.1 2841436 2843124 R Similar to protein of unknown function of Desulfotalea psychrophila; hypothetical protein complement(2841436..2843124) Flavobacterium psychrophilum JIP02/86 5299737 YP_001297335.1 CDS FP2481 NC_009613.1 2843166 2844041 R Some similarities with putative outer membrane protein; hypothetical protein complement(2843166..2844041) Flavobacterium psychrophilum JIP02/86 5300860 YP_001297336.1 CDS FP2482 NC_009613.1 2844041 2845531 R Similar to protein of unknown function of the CFB phylum; hypothetical protein complement(2844041..2845531) Flavobacterium psychrophilum JIP02/86 5300861 YP_001297337.1 CDS FP2483 NC_009613.1 2845565 2846044 R Some similarities with putative membrane peptidaseof Bacteroides spp.; hypothetical protein complement(2845565..2846044) Flavobacterium psychrophilum JIP02/86 5300862 YP_001297338.1 CDS FP2484 NC_009613.1 2846199 2846375 D Weakly similar to twin-arginine translocation protein TatA/E; putative Sec-independent protein translocase (twin-arginine translocation protein) 2846199..2846375 Flavobacterium psychrophilum JIP02/86 5300740 YP_001297339.1 CDS FP2485 NC_009613.1 2846437 2848593 R Similar to transcriptional accessory protein COG2183; RNA-binding protein complement(2846437..2848593) Flavobacterium psychrophilum JIP02/86 5300741 YP_001297340.1 CDS czcD NC_009613.1 2849112 2850011 R Co/Zn/Cd efflux system component. TC 2.A.4.1.Z; cation efflux system protein CzcD complement(2849112..2850011) Flavobacterium psychrophilum JIP02/86 5300742 YP_001297341.1 CDS FP2487 NC_009613.1 2850014 2850262 R Probable transmembrane protein; hypothetical protein complement(2850014..2850262) Flavobacterium psychrophilum JIP02/86 5298532 YP_001297342.1 CDS rpiB NC_009613.1 2850309 2850737 R Carbohydrate degradation; pentose phosphate pathway; ribose 5-phosphate isomerase complement(2850309..2850737) Flavobacterium psychrophilum JIP02/86 5300743 YP_001297343.1 CDS rnr NC_009613.1 2851576 2853750 D 3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs (by similarity); ribonuclease R 2851576..2853750 Flavobacterium psychrophilum JIP02/86 5300922 YP_001297344.1 CDS FP2490 NC_009613.1 2853759 2854430 D hypothetical protein 2853759..2854430 Flavobacterium psychrophilum JIP02/86 5299770 YP_001297345.1 CDS FP2491 NC_009613.1 2854539 2855222 D Similar to protein of unknown function of Chlorobium phaeobacteroides BS1 and Clostridium perfringen. Putative threonine efflux protein; hypothetical protein 2854539..2855222 Flavobacterium psychrophilum JIP02/86 5300744 YP_001297346.1 CDS folB NC_009613.1 2855444 2855803 R dihydroneopterin aldolase complement(2855444..2855803) Flavobacterium psychrophilum JIP02/86 5299851 YP_001297347.1 CDS glnS NC_009613.1 2855907 2857994 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 2855907..2857994 Flavobacterium psychrophilum JIP02/86 5298898 YP_001297348.1 CDS FP2495 NC_009613.1 2858307 2858636 D Probable exported protein; hypothetical protein 2858307..2858636 Flavobacterium psychrophilum JIP02/86 5300243 YP_001297349.1 CDS FP2496 NC_009613.1 2858636 2858986 D Probable transmembrane protein; hypothetical protein 2858636..2858986 Flavobacterium psychrophilum JIP02/86 5299852 YP_001297350.1 CDS FP2497 NC_009613.1 2858990 2859244 D hypothetical protein 2858990..2859244 Flavobacterium psychrophilum JIP02/86 5299853 YP_001297351.1 CDS FP2498 NC_009613.1 2859266 2860249 R Similar to membrane protease subunits, stomatin/prohibitin homologs COG0330; hypothetical protein complement(2859266..2860249) Flavobacterium psychrophilum JIP02/86 5299854 YP_001297352.1 CDS gltX NC_009613.1 2860411 2861916 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2860411..2861916) Flavobacterium psychrophilum JIP02/86 5299855 FP0080 tRNA tRNA-Asn NC_009613.1 103296 103369 R tRNA-Asn complement(103296..103369) Flavobacterium psychrophilum JIP02/86 5299893 FP0148 tRNA tRNA-Leu NC_009613.1 180497 180579 D tRNA-Leu 180497..180579 Flavobacterium psychrophilum JIP02/86 5299144 FP0149 tRNA tRNA-Leu NC_009613.1 180870 180954 R tRNA-Leu complement(180870..180954) Flavobacterium psychrophilum JIP02/86 5300283 FP0236 tRNA tRNA-Met NC_009613.1 285164 285237 R tRNA-Met complement(285164..285237) Flavobacterium psychrophilum JIP02/86 5299686 FP0258 tRNA tRNA-Asp NC_009613.1 309345 309421 R tRNA-Asp complement(309345..309421) Flavobacterium psychrophilum JIP02/86 5299795 FP0298 tRNA tRNA-Gln NC_009613.1 363538 363611 D tRNA-Gln 363538..363611 Flavobacterium psychrophilum JIP02/86 5298505 FP0393 tRNA tRNA-Leu NC_009613.1 480665 480752 R tRNA-Leu complement(480665..480752) Flavobacterium psychrophilum JIP02/86 5300703 FP0394 tRNA tRNA-Gly NC_009613.1 480793 480868 R tRNA-Gly complement(480793..480868) Flavobacterium psychrophilum JIP02/86 5300055 FP0472 tRNA tRNA-Ile NC_009613.1 573290 573366 D tRNA-Ile 573290..573366 Flavobacterium psychrophilum JIP02/86 5300952 FP0473 tRNA tRNA-Ala NC_009613.1 573525 573601 D tRNA-Ala 573525..573601 Flavobacterium psychrophilum JIP02/86 5299215 FP0540 tRNA tRNA-Val NC_009613.1 653859 653936 R tRNA-Val complement(653859..653936) Flavobacterium psychrophilum JIP02/86 5299948 FP0655 tRNA tRNA-His NC_009613.1 779551 779627 R tRNA-His complement(779551..779627) Flavobacterium psychrophilum JIP02/86 5300689 FP0693 tRNA tRNA-Arg NC_009613.1 823512 823588 D tRNA-Arg 823512..823588 Flavobacterium psychrophilum JIP02/86 5299320 FP0771 tRNA tRNA-Ser NC_009613.1 910550 910636 D tRNA-Ser 910550..910636 Flavobacterium psychrophilum JIP02/86 5299035 FP0772 tRNA tRNA-Pro NC_009613.1 910652 910729 D tRNA-Pro 910652..910729 Flavobacterium psychrophilum JIP02/86 5299932 FP0773 tRNA tRNA-Arg NC_009613.1 910760 910836 D tRNA-Arg 910760..910836 Flavobacterium psychrophilum JIP02/86 5299930 FP0897 tRNA tRNA-Ile NC_009613.1 1041551 1041627 D tRNA-Ile 1041551..1041627 Flavobacterium psychrophilum JIP02/86 5300953 FP0898 tRNA tRNA-Ala NC_009613.1 1041786 1041862 D tRNA-Ala 1041786..1041862 Flavobacterium psychrophilum JIP02/86 5299216 FP0926 tRNA tRNA-Tyr NC_009613.1 1071425 1071509 R tRNA-Tyr complement(1071425..1071509) Flavobacterium psychrophilum JIP02/86 5300595 FP1070 tRNA tRNA-Val NC_009613.1 1231906 1231983 D tRNA-Val 1231906..1231983 Flavobacterium psychrophilum JIP02/86 5299268 FP1074 tRNA tRNA-Ala NC_009613.1 1241525 1241601 R tRNA-Ala complement(1241525..1241601) Flavobacterium psychrophilum JIP02/86 5298755 FP1075 tRNA tRNA-Ile NC_009613.1 1241760 1241836 R tRNA-Ile complement(1241760..1241836) Flavobacterium psychrophilum JIP02/86 5299426 FP1114 tRNA tRNA-Pro NC_009613.1 1286190 1286267 D tRNA-Pro 1286190..1286267 Flavobacterium psychrophilum JIP02/86 5300433 FP1183 tRNA tRNA-Trp NC_009613.1 1373502 1373575 R tRNA-Trp complement(1373502..1373575) Flavobacterium psychrophilum JIP02/86 5300128 FP1185 tRNA tRNA-Thr NC_009613.1 1374880 1374954 R tRNA-Thr complement(1374880..1374954) Flavobacterium psychrophilum JIP02/86 5299812 FP1186 tRNA tRNA-Tyr NC_009613.1 1375038 1375121 R tRNA-Tyr complement(1375038..1375121) Flavobacterium psychrophilum JIP02/86 5299915 FP1187 tRNA tRNA-Thr NC_009613.1 1375260 1375336 R tRNA-Thr complement(1375260..1375336) Flavobacterium psychrophilum JIP02/86 5299910 FP1394 tRNA tRNA-Ala NC_009613.1 1588007 1588083 R tRNA-Ala complement(1588007..1588083) Flavobacterium psychrophilum JIP02/86 5298756 FP1395 tRNA tRNA-Ile NC_009613.1 1588242 1588318 R tRNA-Ile complement(1588242..1588318) Flavobacterium psychrophilum JIP02/86 5299427 FP1398 tRNA tRNA-Glu NC_009613.1 1591492 1591566 R tRNA-Glu complement(1591492..1591566) Flavobacterium psychrophilum JIP02/86 5300955 FP1399 tRNA tRNA-Glu NC_009613.1 1591598 1591669 R tRNA-Glu complement(1591598..1591669) Flavobacterium psychrophilum JIP02/86 5298900 FP1444 tRNA tRNA-Lys NC_009613.1 1637067 1637142 D tRNA-Lys 1637067..1637142 Flavobacterium psychrophilum JIP02/86 5300718 FP1445 tRNA tRNA-Lys NC_009613.1 1637166 1637241 D tRNA-Lys 1637166..1637241 Flavobacterium psychrophilum JIP02/86 5300057 FP1446 tRNA tRNA-Leu NC_009613.1 1637282 1637364 D tRNA-Leu 1637282..1637364 Flavobacterium psychrophilum JIP02/86 5300058 FP1520 tRNA tRNA-Ala NC_009613.1 1723771 1723847 R tRNA-Ala complement(1723771..1723847) Flavobacterium psychrophilum JIP02/86 5299345 FP1521 tRNA tRNA-Ile NC_009613.1 1724006 1724082 R tRNA-Ile complement(1724006..1724082) Flavobacterium psychrophilum JIP02/86 5299428 FP1588 tRNA tRNA-Ser NC_009613.1 1805798 1805885 R tRNA-Ser complement(1805798..1805885) Flavobacterium psychrophilum JIP02/86 5300103 FP1787 tRNA tRNA-Thr NC_009613.1 2031353 2031426 R tRNA-Thr complement(2031353..2031426) Flavobacterium psychrophilum JIP02/86 5300260 FP1963 tRNA tRNA-Met NC_009613.1 2225071 2225146 D tRNA-Met 2225071..2225146 Flavobacterium psychrophilum JIP02/86 5299987 FP1964 tRNA tRNA-Met NC_009613.1 2225178 2225253 D tRNA-Met 2225178..2225253 Flavobacterium psychrophilum JIP02/86 5300008 FP2004 tRNA tRNA-Met NC_009613.1 2268952 2269028 R tRNA-Met complement(2268952..2269028) Flavobacterium psychrophilum JIP02/86 5299300 FP2051 tRNA tRNA-Arg NC_009613.1 2314062 2314135 R tRNA-Arg complement(2314062..2314135) Flavobacterium psychrophilum JIP02/86 5300288 FP2131 tRNA tRNA-Gly NC_009613.1 2404787 2404859 R tRNA-Gly complement(2404787..2404859) Flavobacterium psychrophilum JIP02/86 5299507 FP2192 tRNA tRNA-Ala NC_009613.1 2501344 2501420 R tRNA-Ala complement(2501344..2501420) Flavobacterium psychrophilum JIP02/86 5299346 FP2193 tRNA tRNA-Ile NC_009613.1 2501579 2501655 R tRNA-Ile complement(2501579..2501655) Flavobacterium psychrophilum JIP02/86 5299429 FP2292 tRNA tRNA-Ser NC_009613.1 2624029 2624116 D tRNA-Ser 2624029..2624116 Flavobacterium psychrophilum JIP02/86 5299224 FP2400 tRNA tRNA-Ala NC_009613.1 2744027 2744103 D tRNA-Ala 2744027..2744103 Flavobacterium psychrophilum JIP02/86 5298987 FP2435 tRNA tRNA-Phe NC_009613.1 2792260 2792335 D tRNA-Phe 2792260..2792335 Flavobacterium psychrophilum JIP02/86 5300383 FP2492 tRNA tRNA-Cys NC_009613.1 2855266 2855339 R tRNA-Cys complement(2855266..2855339) Flavobacterium psychrophilum JIP02/86 5300016 FP0471 rRNA FP0471 NC_009613.1 571666 573186 D 16S ribosomal RNA 571666..573186 Flavobacterium psychrophilum JIP02/86 5299561 FP0474 rRNA FP0474 NC_009613.1 573810 576609 D 23S ribosomal RNA 573810..576609 Flavobacterium psychrophilum JIP02/86 5300522 FP0475 rRNA FP0475 NC_009613.1 576861 576972 D 5S ribosomal RNA 576861..576972 Flavobacterium psychrophilum JIP02/86 5298753 FP0896 rRNA FP0896 NC_009613.1 1039927 1041447 D 16S ribosomal RNA 1039927..1041447 Flavobacterium psychrophilum JIP02/86 5300968 FP0899 rRNA FP0899 NC_009613.1 1042071 1044870 D 23S ribosomal RNA 1042071..1044870 Flavobacterium psychrophilum JIP02/86 5299425 FP0900 rRNA FP0900 NC_009613.1 1045122 1045233 D 5S ribosomal RNA 1045122..1045233 Flavobacterium psychrophilum JIP02/86 5298754 FP1072 rRNA FP1072 NC_009613.1 1238154 1238265 R 5S ribosomal RNA complement(1238154..1238265) Flavobacterium psychrophilum JIP02/86 5299270 FP1073 rRNA FP1073 NC_009613.1 1238517 1241316 R 23S ribosomal RNA complement(1238517..1241316) Flavobacterium psychrophilum JIP02/86 5299349 FP1076 rRNA FP1076 NC_009613.1 1241940 1243460 R 16S ribosomal RNA complement(1241940..1243460) Flavobacterium psychrophilum JIP02/86 5300279 FP1392 rRNA FP1392 NC_009613.1 1584636 1584747 R 5S ribosomal RNA complement(1584636..1584747) Flavobacterium psychrophilum JIP02/86 5298778 FP1393 rRNA FP1393 NC_009613.1 1584999 1587798 R 23S ribosomal RNA complement(1584999..1587798) Flavobacterium psychrophilum JIP02/86 5299581 FP1396 rRNA FP1396 NC_009613.1 1588422 1589942 R 16S ribosomal RNA complement(1588422..1589942) Flavobacterium psychrophilum JIP02/86 5300280 FP1518 rRNA FP1518 NC_009613.1 1720400 1720511 R 5S ribosomal RNA complement(1720400..1720511) Flavobacterium psychrophilum JIP02/86 5300925 FP1519 rRNA FP1519 NC_009613.1 1720763 1723562 R 23S ribosomal RNA complement(1720763..1723562) Flavobacterium psychrophilum JIP02/86 5299582 FP1522 rRNA FP1522 NC_009613.1 1724186 1725706 R 16S ribosomal RNA complement(1724186..1725706) Flavobacterium psychrophilum JIP02/86 5300281 FP2190 rRNA FP2190 NC_009613.1 2497973 2498084 R 5S ribosomal RNA complement(2497973..2498084) Flavobacterium psychrophilum JIP02/86 5300352 FP2191 rRNA FP2191 NC_009613.1 2498336 2501135 R 23S ribosomal RNA complement(2498336..2501135) Flavobacterium psychrophilum JIP02/86 5299583 FP2194 rRNA FP2194 NC_009613.1 2501759 2503279 R 16S ribosomal RNA complement(2501759..2503279) Flavobacterium psychrophilum JIP02/86 5300282