-- dump date   	20140619_093210
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001409531.1	TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; KEGG: tpt:Tpet_0001 chromosomal replication initiator protein DnaA
YP_001409532.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpt:Tpet_0002 tRNA (guanine-N(7)-)-methyltransferase
YP_001409533.1	KEGG: tma:TM0101 hypothetical protein
YP_001409534.1	PFAM: basic membrane lipoprotein; KEGG: tpt:Tpet_0822 basic membrane lipoprotein
YP_001409535.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0103 simple sugar transport system ATP-binding protein
YP_001409536.1	PFAM: inner-membrane translocator; KEGG: tma:TM0104 simple sugar transport system permease protein
YP_001409537.1	PFAM: inner-membrane translocator; KEGG: tpt:Tpet_0819 inner-membrane translocator
YP_001409538.1	PFAM: protein of unknown function UPF0047; KEGG: tpt:Tpet_0925 protein of unknown function UPF0047
YP_001409540.1	PFAM: histone family protein DNA-binding protein; KEGG: tpt:Tpet_0658 histone family protein DNA-binding protein
YP_001409541.1	PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gur:Gura_1941 metal dependent phosphohydrolase
YP_001409542.1	KEGG: lbl:LBL_0204 LipL45-related protein
YP_001409543.1	KEGG: pth:PTH_2614 hypothetical membrane protein
YP_001409544.1	KEGG: chy:CHY_0905 HDIG domain protein
YP_001409545.1	PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: sat:SYN_01481 adenylate cyclase
YP_001409546.1	PFAM: CHASE2 domain protein; KEGG: drm:Dred_3090 putative CHASE2 sensor protein
YP_001409547.1	PFAM: protein of unknown function UPF0047; KEGG: mxa:MXAN_2547 conserved hypothetical protein TIGR00149
YP_001409548.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: sth:STH1831 transcriptional regulator
YP_001409552.1	PFAM: Fibronectin type III domain protein; KEGG: gur:Gura_1161 hypothetical protein
YP_001409553.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: tpt:Tpet_0335 UDP-glucose 6-dehydrogenase
YP_001409554.1	PFAM: polysaccharide export protein; KEGG: tma:TM0638 polysaccharide export protein, putative
YP_001409555.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: tpt:Tpet_0285 lipopolysaccharide biosynthesis protein
YP_001409556.1	KEGG: fnu:FN0456 hypothetical cytosolic protein
YP_001409557.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tpt:Tpet_0979 putative cold-shock DNA-binding domain protein
YP_001409558.1	TIGRFAM: putative regulatory protein, FmdB family; KEGG: tpt:Tpet_0781 putative regulatory protein, FmdB family
YP_001409559.1	PFAM: Insertion element protein; KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001409560.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0836 diguanylate cyclase (GGDEF domain)
YP_001409561.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cth:Cthe_0693 pseudouridine synthase, Rsu
YP_001409562.1	KEGG: sha:SH1116 hypothetical protein
YP_001409563.1	PFAM: Rubrerythrin; KEGG: tpt:Tpet_0914 rubrerythrin
YP_001409564.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001409565.1	KEGG: cac:CAC1009 cell wall biogenesis enzyme (N-terminal domain related to N-acetylmuramoyl-L-alanine amidase and C-terminal domain related to L-alanoyl-D-glutamate peptidase); peptodoglycan-binding domain
YP_001409566.1	PFAM: nucleoside diphosphate kinase; KEGG: hbu:Hbut_0549 nucleoside diphosphate kinase
YP_001409567.1	KEGG: tma:TM0238 hypothetical protein
YP_001409568.1	PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0041 glycosyl transferase, family 51
YP_001409569.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: tma:TM0887 methylated-DNA-protein-cysteine methyltransferase
YP_001409570.1	PFAM: CMP/dCMP deaminase zinc-binding; KEGG: tpt:Tpet_0516 CMP/dCMP deaminase, zinc-binding
YP_001409571.1	catalyzes the coenzyme A-dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_001409572.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tpt:Tpet_0514 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_001409573.1	PFAM: diacylglycerol kinase; KEGG: tpt:Tpet_0513 diacylglycerol kinase
YP_001409574.1	regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins
YP_001409575.1	PFAM: S-layer domain protein; KEGG: tpt:Tpet_1024 S-layer domain protein
YP_001409576.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: tma:TM0920 alcohol dehydrogenase, iron-containing
YP_001409577.1	PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein
YP_001409578.1	PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein
YP_001409579.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1898 sugar transport ATP-binding protein
YP_001409580.1	KEGG: fnu:FN1899 hypothetical lipoprotein
YP_001409581.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: mth:MTH1852 indolepyruvate ferredoxin oxidoreductase, alpha subunit
YP_001409582.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: mse:Msed_1596 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_001409583.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpt:Tpet_1585 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_001409584.1	TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_1584 pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
YP_001409585.1	PFAM: nitroreductase; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tma:TM0386 bacterioferritin comigratory protein/NADH dehydrogenase
YP_001409586.1	PFAM: nuclease (SNase domain protein); KEGG: chy:CHY_1698 prophage LambdaCh01, nuclease domain protein
YP_001409587.1	PFAM: glycosyl transferase group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0172 glycosyl transferase, family 2
YP_001409589.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001409590.1	PFAM: Integrase catalytic region; KEGG: pth:PTH_1572 transposase and inactivated derivatives
YP_001409591.1	PFAM: transposase IS3/IS911 family protein
YP_001409592.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1786 transposase
YP_001409593.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cac:CAC0818 diguanylate cyclase/phosphodiesterase domain (GGDEF) containing protein
YP_001409594.1	TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: tpt:Tpet_1269 aspartate-semialdehyde dehydrogenase
YP_001409595.1	PFAM: diaminopimelate epimerase; KEGG: tma:TM1522 diaminopimelate epimerase
YP_001409596.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001409597.1	PFAM: dihydrodipicolinate reductase; KEGG: tpt:Tpet_1272 dihydrodipicolinate reductase
YP_001409598.1	PFAM: transferase hexapeptide repeat containing protein; Tetrahydrodipicolinate succinyltransferase domain protein; KEGG: tma:TM1519 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
YP_001409599.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_001409600.1	PFAM: aminotransferase class-III; KEGG: aae:aq_023 acetylornithine aminotransferase
YP_001409601.1	PFAM: cobalt transport protein; KEGG: tpt:Tpet_0929 cobalt transport protein
YP_001409602.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001409604.1	PFAM: protein of unknown function DUF62; KEGG: tpt:Tpet_0271 protein of unknown function DUF62
YP_001409605.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tma:TM1516 hydrolase, ama/HipO/HyuC family
YP_001409606.1	KEGG: azo:azo2584 conserved hypothetical protein
YP_001409607.1	PFAM: putative esterase; KEGG: tko:TK0522 carbohydrate esterase, family 1
YP_001409608.1	KEGG: tpt:Tpet_1410 hypothetical protein
YP_001409609.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001409610.1	PFAM: conserved hypothetical protein; KEGG: gur:Gura_1789 uncharacterised conserved protein UCP033563
YP_001409611.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_001409612.1	PFAM: ROK family protein; KEGG: tpt:Tpet_1323 ROK family protein
YP_001409613.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: tpt:Tpet_1698 outer membrane chaperone Skp (OmpH)
YP_001409614.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1054 ABC transporter, ATP-binding protein
YP_001409615.1	KEGG: tpt:Tpet_0451 uncharacterized protein-like protein
YP_001409616.1	PFAM: response regulator receiver; KEGG: tma:TM0468 response regulator
YP_001409617.1	PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tma:TM0467 regulatory protein, putative
YP_001409618.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001409619.1	PFAM: protein of unknown function DUF322; KEGG: tpt:Tpet_1052 protein of unknown function DUF322
YP_001409620.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001409622.1	TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; KEGG: tma:TM0040 dihydropteroate synthase
YP_001409623.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tpt:Tpet_0660 pseudouridine synthase
YP_001409624.1	PFAM: von Willebrand factor type A; KEGG: mhu:Mhun_0489 von Willebrand factor, type A
YP_001409626.1	PFAM: heat shock protein Hsp20; KEGG: tma:TM0374 heat shock protein, class I
YP_001409627.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tma:TM1401 D-3-phosphoglycerate dehydrogenase
YP_001409628.1	PFAM: aminotransferase class V; KEGG: tpt:Tpet_1383 aminotransferase, class V
YP_001409629.1	PFAM: aminotransferase class I and II; KEGG: tma:TM1131 aminotransferase, putative
YP_001409630.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001409631.1	PFAM: phosphate acetyl/butaryl transferase; KEGG: tma:TM1130 phosphate acetyltransferase
YP_001409632.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001409633.1	KEGG: tpt:Tpet_1044 hypothetical protein
YP_001409634.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tma:TM1758 2-oxoisovalerate ferredoxin oxidoreductase, delta subunit
YP_001409635.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_001409636.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_1047 thiamine pyrophosphate enzyme domain protein TPP-binding
YP_001409637.1	TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tpt:Tpet_1048 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_001409639.1	KEGG: cpr:CPR_1313 ISCpe7, transposase
YP_001409640.1	TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: tpt:Tpet_1436 inosine-5'-monophosphate dehydrogenase
YP_001409642.1	KEGG: tpt:Tpet_0579 hypothetical protein
YP_001409643.1	KEGG: tpt:Tpet_0579 hypothetical protein
YP_001409644.1	KEGG: tma:TM0339 hypothetical protein
YP_001409645.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: tma:TM0526 host factor I
YP_001409646.1	PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: tma:TM0527 GTP-binding protein HflX
YP_001409647.1	PFAM: peptidase M23B; KEGG: tpt:Tpet_1131 peptidase M23B
YP_001409648.1	KEGG: tpt:Tpet_1132 hypothetical protein
YP_001409649.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001409650.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001409651.1	KEGG: tma:TM1241 hypothetical protein
YP_001409652.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tpt:Tpet_0900 methyl-accepting chemotaxis sensory transducer
YP_001409653.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_001409654.1	TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: tko:TK1045 cobalamin adenosyltransferase
YP_001409655.1	PFAM: GCN5-related N-acetyltransferase; KEGG: tma:TM0577 hypothetical protein
YP_001409656.1	KEGG: tpt:Tpet_0755 hypothetical protein
YP_001409657.1	PFAM: iron dependent repressor; KEGG: tpt:Tpet_0316 iron dependent repressor
YP_001409658.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: tpt:Tpet_0178 phosphoribulokinase/uridine kinase
YP_001409659.1	TIGRFAM: ribonuclease, Rne/Rng family; KEGG: tpt:Tpet_1186 ribonuclease, Rne/Rng family
YP_001409660.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_001409661.1	KEGG: tpt:Tpet_0089 S-layer domain-like protein
YP_001409662.1	PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: tma:TM0837 general secretion pathway protein E
YP_001409663.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001409664.1	PFAM: cell division protein FtsA; KEGG: tpt:Tpet_0092 cell division protein FtsA
YP_001409666.1	PFAM: PDZ/DHR/GLGF domain protein; protein of unknown function DUF323; KEGG: cph:Cpha266_2259 protein of unknown function DUF323
YP_001409667.1	PFAM: Appr-1-p processing domain protein; KEGG: tpe:Tpen_0194 Appr-1-p processing domain protein
YP_001409668.1	PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: tma:TM0508 putative ATPase
YP_001409669.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility domain; KEGG: tpt:Tpet_0413 NAD-dependent epimerase/dehydratase
YP_001409670.1	PFAM: iron dependent repressor; KEGG: tpt:Tpet_0412 iron dependent repressor
YP_001409671.1	TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: ttj:TTHA0718 uracil-DNA glycosylase
YP_001409672.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2015 ABC transporter ATP-binding protein
YP_001409673.1	PFAM: ABC transporter transmembrane region; SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1824 ABC transporter, ATP-binding protein
YP_001409674.1	PFAM: regulatory protein MarR; KEGG: ctc:CTC00424 transcriptional regulator
YP_001409676.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001409677.1	PFAM: alanine racemase domain protein; KEGG: tma:TM1731 hypothetical protein
YP_001409678.1	PFAM: protein of unknown function YGGT; KEGG: tpt:Tpet_1027 protein of unknown function YGGT
YP_001409679.1	catalyzes the phosphorylation of NAD to NADP
YP_001409680.1	PFAM: PhoU family protein; KEGG: tpt:Tpet_1029 phosphate uptake regulator, PhoU
YP_001409681.1	PFAM: permease YjgP/YjgQ family protein; KEGG: tpt:Tpet_1030 permease YjgP/YjgQ family protein
YP_001409682.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tpt:Tpet_0339 tRNA(Ile)-lysidine synthetase
YP_001409683.1	KEGG: tma:TM0580 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_001409684.1	KEGG: tpt:Tpet_0337 thioesterase-like protein
YP_001409685.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0582 hypothetical protein
YP_001409686.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001409687.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_1495 ABC transporter related
YP_001409688.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: tpt:Tpet_1496 prevent-host-death family protein
YP_001409689.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0824 AstB/ChuR-related protein
YP_001409690.1	PFAM: regulatory protein TetR; KEGG: tma:TM0823 transcriptional regulator, TetR family
YP_001409691.1	PFAM: major facilitator superfamily MFS_1; KEGG: tpt:Tpet_0794 major facilitator superfamily MFS_1
YP_001409692.1	PFAM: RNA binding S1 domain protein; KEGG: tpt:Tpet_0981 RNA binding S1 domain protein
YP_001409693.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001409694.1	PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: tpt:Tpet_1766 methyl-accepting chemotaxis sensory transducer
YP_001409695.1	KEGG: sai:Saci_0270 conserved archaeal protein
YP_001409696.1	PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: tma:TM0594 hypothetical protein
YP_001409697.1	KEGG: tpt:Tpet_0352 hypothetical protein
YP_001409698.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tma:TM0668 pleiotropic regulatory protein
YP_001409700.1	PFAM: DNA repair protein RadC; KEGG: tma:TM1557 DNA repair protein
YP_001409701.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: bcz:BCZK4199 septum formation protein
YP_001409702.1	KEGG: tpt:Tpet_0270 hypothetical protein
YP_001409703.1	PFAM: beta-lactamase domain protein; KEGG: tpt:Tpet_0790 beta-lactamase domain protein
YP_001409704.1	KEGG: cbo:CBO1064 membrane protein
YP_001409705.1	TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; KEGG: tma:TM0722 ribonuclease R
YP_001409706.1	KEGG: tpt:Tpet_0824 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase
YP_001409707.1	PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: lmo:lmo1086 similar to CDP-ribitol pyrophosphorylase
YP_001409708.1	KEGG: tpt:Tpet_0450 integral membrane protein-like protein
YP_001409709.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_0694 phosphodiesterase, MJ0936 family
YP_001409710.1	KEGG: tma:TM1584 comFC protein, putative
YP_001409712.1	PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_0322 extracellular solute-binding protein, family 1
YP_001409713.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1722 ABC transporter related
YP_001409714.1	KEGG: tpt:Tpet_1721 hypothetical protein
YP_001409715.1	PFAM: regulatory protein TetR; KEGG: tma:TM1030 transcriptional regulator, TetR family
YP_001409716.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0500 putative oligopeptide transport system ATP-binding protein
YP_001409717.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_0419 oligopeptide/dipeptide ABC transporter, ATPase subunit
YP_001409718.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0418 binding-protein-dependent transport systems inner membrane component
YP_001409719.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0417 binding-protein-dependent transport systems inner membrane component
YP_001409720.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001409721.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001409722.1	TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tma:TM0804 histidinol-phosphatase
YP_001409723.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001409724.1	KEGG: tpt:Tpet_1500 hypothetical protein
YP_001409725.1	KEGG: tma:TM1271 type IV pilin-related protein
YP_001409726.1	PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE0727 D-lysine 5,6-aminomutase beta subunit
YP_001409727.1	PFAM: D-Lysine 56-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit
YP_001409728.1	PFAM: DNA mismatch repair protein MutS domain protein; KEGG: pgi:PG1072 MutS family protein
YP_001409729.1	KEGG: pgi:PG1071 hypothetical protein
YP_001409730.1	PFAM: MaoC domain protein dehydratase; KEGG: MaoC family protein
YP_001409731.1	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: fnu:FN1866 lysine 2,3-aminomutase
YP_001409732.1	KEGG: tte:TTE0722 hypothetical protein
YP_001409733.1	PFAM: protein of unknown function DUF849; KEGG: sth:STH64 hypothetical protein
YP_001409734.1	KEGG: tte:TTE0718 acyl-CoA hydrolase
YP_001409735.1	TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: rru:Rru_A1471 butyrate-acetoacetate CoA-transferase
YP_001409736.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: tte:TTE0720 Acyl-CoA:acetate CoA transferase alpha subunit
YP_001409737.1	PFAM: protein of unknown function DUF152; KEGG: cth:Cthe_0911 protein of unknown function DUF152
YP_001409738.1	KEGG: pgi:PG0757 hypothetical protein
YP_001409739.1	KEGG: tma:TM1046 hypothetical protein
YP_001409740.1	PFAM: phosphoesterase PA-phosphatase related; KEGG: gme:Gmet_1347 phosphoesterase, PA-phosphatase related
YP_001409741.1	PFAM: GCN5-related N-acetyltransferase; aminotransferase class I and II; KEGG: cac:CAC2970 PLP-dependent aminotransferase
YP_001409743.1	TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_1960 diguanylate cyclase with PAS/PAC sensor
YP_001409744.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001409745.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0969 alpha amylase, catalytic region
YP_001409746.1	PFAM: Na+/H+ antiporter NhaC; KEGG: pfu:PF2032 hypothetical protein
YP_001409747.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001409748.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001409749.1	TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: tma:TM1426 NADH dehydrogenase I chain G
YP_001409750.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tma:TM1425 NADH dehydrogenase I chain F
YP_001409751.1	PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tma:TM1424 NADH dehydrogenase I chain E
YP_001409752.1	PFAM: glycosyl transferase family 2; KEGG: ctc:CTC02258 succinoglycan biosynthesis protein ExoA
YP_001409753.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tma:TM1034 UDP-N-acetylglucosamine 2-epimerase
YP_001409754.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; KEGG: tma:TM0381 dihydrolipoamide dehydrogenase
YP_001409755.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; KEGG: tma:TM0171 hypothetical protein
YP_001409756.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001409757.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpt:Tpet_1037 HAD-superfamily hydrolase, subfamily IIA
YP_001409758.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1786 transposase
YP_001409760.1	TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: tma:TM0201 NADH dehydrogenase I chain G
YP_001409761.1	KEGG: tpt:Tpet_1505 hypothetical protein
YP_001409762.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_001409764.1	catalyzes the formation of biotin from dethiobiotin and sulfur
YP_001409765.1	KEGG: tpt:Tpet_0745 hypothetical protein
YP_001409766.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0721 binding-protein-dependent transport systems inner membrane component
YP_001409767.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0339 putative sulfonate transport system ATP-binding protein
YP_001409768.1	KEGG: tpt:Tpet_0722 ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein
YP_001409769.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: tpt:Tpet_0475 small GTP-binding protein
YP_001409770.1	catalyzes the formation of fumarate from aspartate
YP_001409771.1	PFAM: glycosyl transferase family 4; KEGG: tma:TM0805 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
YP_001409773.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001409774.1	KEGG: aba:Acid345_0531 hypothetical protein
YP_001409775.1	KEGG: tpt:Tpet_0950 hypothetical protein
YP_001409776.1	KEGG: tpt:Tpet_0134 hypothetical protein
YP_001409777.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0793 putative ABC-2 type transport system ATP-binding protein
YP_001409778.1	KEGG: mma:MM0391 hypothetical protein
YP_001409779.1	PFAM: transport system permease protein; KEGG: tpt:Tpet_0845 transport system permease protein
YP_001409780.1	PFAM: periplasmic binding protein; KEGG: tma:TM0080 putative iron(III) transport system substrate-binding protein
YP_001409782.1	TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: tpt:Tpet_0873 ferrous iron transport protein B
YP_001409783.1	PFAM: FeoA family protein; KEGG: tpt:Tpet_0874 FeoA family protein
YP_001409784.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: tma:TM0943 glutamine synthetase
YP_001409785.1	PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_0582 radical SAM N-terminal domain protein
YP_001409786.1	PFAM: alanine racemase domain protein; KEGG: tma:TM1597 hypothetical protein
YP_001409787.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001409788.1	PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tpt:Tpet_1197 phosphoesterase, RecJ domain protein
YP_001409789.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM1594 conserved hypothetical protein, GGDEF domain
YP_001409790.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM1594 conserved hypothetical protein, GGDEF domain
YP_001409791.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001409792.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001409793.1	PFAM: regulatory protein MarR; KEGG: tpt:Tpet_0220 transcriptional regulator, MarR family
YP_001409794.1	KEGG: ttj:TTHA1766 S-layer-like protein
YP_001409795.1	PFAM: S-layer domain protein; KEGG: tma:TM0711 hypothetical protein
YP_001409796.1	PFAM: Patatin; KEGG: tma:TM0712 hypothetical protein
YP_001409797.1	KEGG: tpt:Tpet_0217 hypothetical protein
YP_001409798.1	KEGG: tpt:Tpet_0216 protein of unknown function DUF1239
YP_001409799.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001409800.1	KEGG: tma:TM0686 DNA polymerase III, gamma and tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase
YP_001409801.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tpt:Tpet_1421 twitching motility protein
YP_001409802.1	TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tma:TM1363 peptide chain release factor RF-1
YP_001409803.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001409804.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001409805.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: tma:TM1639 electron transfer protein, putative
YP_001409806.1	TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_1151 glutamate synthase (NADPH), homotetrameric
YP_001409808.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tpt:Tpet_1550 periplasmic binding protein/LacI transcriptional regulator
YP_001409809.1	PFAM: glycoside hydrolase family 16; KEGG: tpt:Tpet_0899 glycoside hydrolase, family 16
YP_001409810.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: tma:TM0025 beta-glucosidase
YP_001409811.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component
YP_001409812.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component
YP_001409813.1	KEGG: csc:Csac_2415 hypothetical protein
YP_001409814.1	PFAM: NHL repeat containing protein; KEGG: csc:Csac_2416 hypothetical protein
YP_001409815.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2417 binding-protein-dependent transport systems inner membrane component
YP_001409816.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2418 binding-protein-dependent transport systems inner membrane component
YP_001409817.1	PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_2419 extracellular solute-binding protein, family 1
YP_001409818.1	PFAM: extracellular solute-binding protein family 1; KEGG: ssv:SSU98_0171 ABC-type sugar transport system, periplasmic component
YP_001409819.1	PFAM: glycoside hydrolase family 30; KEGG: aba:Acid345_4153 glucosylceramidase
YP_001409820.1	KEGG: tpt:Tpet_1494 cell division protein FtsA
YP_001409821.1	TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: tpt:Tpet_1493 MutS2 family protein
YP_001409822.1	KEGG: tma:TM0929 hypothetical protein
YP_001409824.1	PFAM: Bacitracin resistance protein BacA; KEGG: mmq:MmarC5_0441 bacitracin resistance protein BacA
YP_001409825.1	PFAM: protein of unknown function DUF327; KEGG: tpt:Tpet_1145 protein of unknown function DUF327
YP_001409826.1	KEGG: tpt:Tpet_1200 cobyrinic acid a,c-diamide synthase
YP_001409827.1	TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: tpt:Tpet_0031 galactose-1-phosphate uridylyltransferase
YP_001409828.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: tma:TM0895 glycogen synthase
YP_001409829.1	PFAM: beta-lactamase domain protein; KEGG: tpt:Tpet_0033 beta-lactamase domain protein
YP_001409830.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0730 MATE efflux family protein
YP_001409831.1	PFAM: major facilitator superfamily MFS_1; KEGG: bha:BH3482 multidrug-efflux transporter
YP_001409832.1	PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tma:TM1391 ATP-dependent Clp protease, ATPase subunit
YP_001409833.1	TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; PFAM: extracellular solute-binding protein family 1; KEGG: pfu:PF1751 probable solute binding lipoprotein
YP_001409834.1	SMART: extracellular solute-binding protein family 3; KEGG: bcn:Bcen_4284 twin-arginine translocation pathway signal
YP_001409835.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tma:TM1724 3-oxoacyl-(acyl carrier protein) reductase
YP_001409836.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: cps:CPS_2626 acetyl-CoA acetyltransferase
YP_001409837.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001409838.1	PFAM: Polyprenyl synthetase; KEGG: pto:PTO0848 geranylgeranyl pyrophosphate synthase
YP_001409839.1	PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tpt:Tpet_1370 stage II sporulation E family protein
YP_001409840.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpt:Tpet_1371 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_001409841.1	KEGG: cbo:CBO1829 hypothetical protein
YP_001409842.1	TIGRFAM: ribosomal subunit interface protein; KEGG: tpt:Tpet_1185 sigma 54 modulation protein/ribosomal protein S30EA
YP_001409844.1	PFAM: DegV family protein; KEGG: ctc:CTC00884 DegV family protein
YP_001409845.1	PFAM: DegV family protein; KEGG: cac:CAC1624 uncharacterized protein from DegV (B.subtilis) family
YP_001409846.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the epsilon subunit is part of the catalytic core of the ATP synthase complex
YP_001409847.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001409848.1	TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: tpt:Tpet_1180 ATP synthase F1, gamma subunit
YP_001409849.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001409850.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001409851.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: tpt:Tpet_1177 ATP synthase F0, B subunit
YP_001409852.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001409853.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001409856.1	PFAM: creatinase; peptidase M24; KEGG: tpt:Tpet_0881 peptidase M24
YP_001409857.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: tpt:Tpet_1247 Holliday junction resolvase YqgF
YP_001409858.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: tma:TM1546 single stranded DNA-specific exonuclease
YP_001409859.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001409860.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tma:TM1723 hypothetical protein
YP_001409861.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: bfs:BF0904 putative flavoprotein
YP_001409862.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: tma:TM1094 RNA methyltransferase, putative
YP_001409863.1	PFAM: major facilitator superfamily MFS_1; KEGG: chy:CHY_0815 putative fosmidomycin resistance protein
YP_001409865.1	TIGRFAM: valyl-tRNA synthetase; KEGG: tpt:Tpet_1102 valyl-tRNA synthetase
YP_001409866.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tpt:Tpet_0759 FolC bifunctional protein
YP_001409867.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: tpt:Tpet_0778 iojap-like protein
YP_001409868.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tma:TM0936 hypothetical protein
YP_001409869.1	TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0515 hypothetical protein
YP_001409870.1	PFAM: extracellular solute-binding protein family 5; KEGG: tpt:Tpet_0460 4-phytase
YP_001409872.1	PFAM: Endonuclease V; KEGG: tma:TM1865 endonuclease V
YP_001409873.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001409874.1	PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: tpt:Tpet_1808 citrate transporter
YP_001409875.1	PFAM: Citrate transporter; KEGG: tpt:Tpet_1706 citrate transporter
YP_001409876.1	PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: tma:TM0163 hypothetical protein
YP_001409877.1	PFAM: chemotaxis sensory transducer; KEGG: tpt:Tpet_0909 methyl-accepting chemotaxis sensory transducer
YP_001409878.1	PFAM: beta-lactamase domain protein; KEGG: tma:TM0013 hypothetical protein
YP_001409879.1	PFAM: Chromate transporter; KEGG: ctc:CTC00661 chromate transport protein
YP_001409880.1	PFAM: Chromate transporter; KEGG: cbo:CBO0534 probable chromate transport protein
YP_001409881.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: cdf:CD0354A hypothetical protein
YP_001409882.1	KEGG: tma:TM1619 DNA-directed DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2
YP_001409883.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: tma:TM1620 hypothetical protein
YP_001409884.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: tpt:Tpet_1324 DegV family protein
YP_001409885.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001409886.1	PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_0726 ATPase AAA-2 domain protein
YP_001409887.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tpt:Tpet_0319 PHP C-terminal domain protein
YP_001409888.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001409889.1	TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: tpt:Tpet_0827 nicotinate (nicotinamide) nucleotide adenylyltransferase
YP_001409890.1	PFAM: dihydrouridine synthase DuS; KEGG: tpt:Tpet_0828 putative TIM-barrel protein, nifR3 family
YP_001409891.1	PFAM: Phosphoglycerate mutase; KEGG: tma:TM1374 phosphoglycerate mutase
YP_001409892.1	TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tma:TM1376 spermidine/putrescine transport system ATP-binding protein
YP_001409893.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1377 spermidine/putrescine transport system permease protein
YP_001409894.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_1405 ornithine carbamoyltransferase
YP_001409895.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001409896.1	KEGG: bld:BLi02183 methyl-accepting chemotaxis protein; RBL03548
YP_001409897.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001409898.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: tpt:Tpet_0019 flagellar biosynthesis protein FlhA
YP_001409899.1	positive regulator of class III flagellar genes
YP_001409900.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tma:TM0906 conserved hypothetical protein
YP_001409902.1	PFAM: type IV pilus assembly PilZ; KEGG: tma:TM0905 hypothetical protein
YP_001409903.1	PFAM: CheC domain protein; KEGG: tma:TM0904 chemotaxis protein CheC
YP_001409904.1	stimulates methylation of MCP proteins; catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001409905.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tma:TM0902 RNA polymerase sigma-28 factor, putative
YP_001409906.1	KEGG: tma:TM0900 hypothetical protein
YP_001409908.1	KEGG: cpr:CPR_0635 ISCpe7, transposase
YP_001409909.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tpt:Tpet_0680 electron transport complex, RnfABCDGE type, C subunit
YP_001409910.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: tpt:Tpet_0679 electron transport complex, RnfABCDGE type, D subunit
YP_001409911.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; KEGG: tpt:Tpet_0678 electron transport complex, RnfABCDGE type, G subunit
YP_001409912.1	in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase
YP_001409913.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: tpt:Tpet_0676 electron transport complex, RnfABCDGE type, A subunit
YP_001409914.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; SMART: KH domain protein; KEGG: tma:TM1345 polynucleotide phosphorylase
YP_001409915.1	PFAM: peptidase M16 domain protein; KEGG: tpt:Tpet_1437 peptidase M16 domain protein
YP_001409916.1	heat shock protein involved in degradation of misfolded proteins
YP_001409917.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0321 binding-protein-dependent transport systems inner membrane component
YP_001409918.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0320 monosaccharide-transporting ATPase
YP_001409919.1	KEGG: tma:TM0563 hypothetical protein
YP_001409920.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; cytidylyltransferase; KEGG: tpt:Tpet_0070 riboflavin biosynthesis protein RibF
YP_001409921.1	KEGG: tma:TM0366 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_001409922.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: tpt:Tpet_1623 flagellar hook-associated 2 domain protein
YP_001409923.1	PFAM: flagellar protein FlaG protein; KEGG: tma:TM1124 flagellar protein FlaG
YP_001409924.1	PFAM: ribosome-binding factor A; KEGG: tma:TM0855 ribosome-binding factor A
YP_001409925.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM0854 hypothetical protein
YP_001409926.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tma:TM0853 sensor histidine kinase
YP_001409927.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001409928.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001409929.1	KEGG: tma:TM1633 ATP-dependent protease LA; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase
YP_001409930.1	PFAM: protein of unknown function UPF0079; KEGG: tma:TM1632 hypothetical protein
YP_001409931.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: tpt:Tpet_1364 glycerol kinase
YP_001409932.1	PFAM: PSP1 domain protein; KEGG: tma:TM0772 hypothetical protein
YP_001409933.1	KEGG: tpt:Tpet_0157 DNA polymerase III gamma/tau subunits-like protein
YP_001409934.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tpt:Tpet_0288 HAD-superfamily hydrolase, subfamily IA, variant 3
YP_001409935.1	PFAM: protein of unknown function DUF45; KEGG: csc:Csac_2672 protein of unknown function DUF45
YP_001409936.1	PFAM: class II aldolase/adducin family protein; KEGG: drm:Dred_2062 class II aldolase/adducin family protein
YP_001409937.1	catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism
YP_001409938.1	TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: tma:TM1191 galactose-1-phosphate uridylyltransferase
YP_001409939.1	PFAM: glycoside hydrolase clan GH-D; KEGG: tma:TM1192 alpha-galactosidase
YP_001409940.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tpt:Tpet_1556 periplasmic binding protein/LacI transcriptional regulator
YP_001409941.1	PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; KEGG: tpt:Tpet_1557 beta-galactosidase
YP_001409942.1	PFAM: protein of unknown function DUF894 DitE; major facilitator superfamily MFS_1; KEGG: csc:Csac_0786 major facilitator superfamily MFS_1
YP_001409943.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; KEGG: tma:TM0118 ribonucleoside-diphosphate reductase alpha chain
YP_001409944.1	PFAM: Insertion element protein; KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001409945.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001409946.1	PFAM: protein of unknown function DUF1121; KEGG: tpt:Tpet_0773 protein of unknown function DUF1121
YP_001409947.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: tma:TM1517 diaminopimelate decarboxylase
YP_001409948.1	PFAM: protein of unknown function DUF74; KEGG: tpt:Tpet_0165 protein of unknown function DUF74
YP_001409949.1	KEGG: tpt:Tpet_0164 hypothetical protein
YP_001409950.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0765 putative ABC-2 type transport system ATP-binding protein
YP_001409951.1	PFAM: regulatory protein GntR HTH; KEGG: tma:TM0766 transcriptional regulator, GntR family
YP_001409952.1	PFAM: protein of unknown function DUF214; KEGG: tpt:Tpet_0224 protein of unknown function DUF214
YP_001409953.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: tpt:Tpet_1343 RNA polymerase, sigma 70 subunit, RpoD family
YP_001409954.1	TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; KEGG: tma:TM1452 DNA primase
YP_001409955.1	forms a direct contact with the tRNA during translation
YP_001409956.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001409957.1	KEGG: tpt:Tpet_1339 membrane protein-like protein
YP_001409958.1	involved in the peptidyltransferase reaction during translation
YP_001409959.1	PFAM: protein of unknown function DUF464; KEGG: fnu:FN1118 hypothetical protein
YP_001409960.1	PFAM: ribosomal protein L21; KEGG: tpt:Tpet_1336 ribosomal protein L21
YP_001409961.1	PFAM: Stage V sporulation protein S; KEGG: tpt:Tpet_0030 stage V sporulation protein S
YP_001409962.1	KEGG: tma:TM0898 hypothetical protein
YP_001409963.1	PFAM: protein of unknown function DUF1385; KEGG: tpt:Tpet_1242 protein of unknown function DUF1385
YP_001409964.1	PFAM: glycosyl transferase family 4; KEGG: tpt:Tpet_1243 glycosyl transferase, family 4
YP_001409965.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001409966.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tpt:Tpet_0688 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_001409967.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tpt:Tpet_0687 UDP-N-acetylmuramyl-tripeptide synthetase
YP_001409968.1	PFAM: glycosyl transferase group 1; KEGG: pma:Pro1880 glycosyltransferase
YP_001409969.1	PFAM: PfkB domain protein; KEGG: cac:CAC0424 fructokinase
YP_001409970.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0956 binding-protein-dependent transport systems inner membrane component
YP_001409971.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0955 binding-protein-dependent transport systems inner membrane component
YP_001409972.1	PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_0954 extracellular solute-binding protein, family 1
YP_001409973.1	PFAM: glycosyl transferase group 1; KEGG: tpt:Tpet_0528 glycosyl transferase, group 1
YP_001409974.1	PFAM: ROK family protein; KEGG: tma:TM0393 transcriptional regulator, XylR-related
YP_001409975.1	TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cvi:CV1085 uridine kinase
YP_001409976.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001409978.1	TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: tma:TM1437 dimethyladenosine transferase
YP_001409979.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: tpt:Tpet_0280 Cof-like hydrolase
YP_001409980.1	KEGG: tpt:Tpet_0281 hypothetical protein
YP_001409981.1	TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: tma:TM0331 orotate phosphoribosyltransferase
YP_001409982.1	TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: tpt:Tpet_0587 orotidine 5'-phosphate decarboxylase
YP_001409983.1	TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: tpt:Tpet_0586 dihydroorotate dehydrogenase family protein
YP_001409984.1	PFAM: Oxidoreductase FAD-binding domain protein; KEGG: tpt:Tpet_0585 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductase-like protein
YP_001409985.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001409986.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: tma:TM0665 cysteine synthase
YP_001409987.1	KEGG: tma:TM0666 serine acetyltransferase
YP_001409988.1	PFAM: ferric-uptake regulator; KEGG: bfs:BF3019 putative iron uptake-related regulatory protein
YP_001409989.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: tpt:Tpet_0274 rubrerythrin
YP_001409990.1	PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: tpt:Tpet_0273 superoxide reductase
YP_001409991.1	PFAM: protein of unknown function DUF554; KEGG: tma:TM0226 hypothetical protein
YP_001409993.1	PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: tpt:Tpet_0379 malate dehydrogenase (oxaloacetate-decarboxylating)
YP_001409994.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: mfa:Mfla_2469 diguanylate cyclase/phosphodiesterase (GGDEF and EAL domains) with PAS/PAC sensor(s)
YP_001409995.1	PFAM: 2-phosphosulfolactate phosphatase; KEGG: tte:TTE1972 putative 2-phosphosulfolactate phosphatase
YP_001409996.1	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1376 ABC transporter related
YP_001409997.1	PFAM: SufBD protein; KEGG: tpt:Tpet_1377 SufBD protein
YP_001409998.1	PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rci:RRC475 putative transporter (arsenical pump membrane protein family)
YP_001409999.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: tma:TM0608 hypothetical protein
YP_001410000.1	PFAM: protein of unknown function DUF1576; KEGG: ctc:CTC00068 hypothetical protein
YP_001410002.1	PFAM: isochorismatase hydrolase; KEGG: tma:TM0133 isochorismatase-related protein
YP_001410003.1	PFAM: Radical SAM domain protein; KEGG: tma:TM0136 hypothetical protein
YP_001410004.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_0791 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001410005.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_0921 phosphodiesterase, MJ0936 family
YP_001410006.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: tte:TTE0729 predicted epimerase, PhzC/PhzF homolog
YP_001410007.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: tma:TM0769 phosphomannomutase
YP_001410008.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pho:PH1352 thiamine transport system permease protein
YP_001410009.1	PFAM: glycoside hydrolase family 20; KEGG: rrs:RoseRS_3616 glycoside hydrolase, family 20
YP_001410010.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001410011.1	PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: tpt:Tpet_0555 fibronectin-binding A domain protein
YP_001410012.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: tpe:Tpen_1575 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001410013.1	PFAM: phosphate transporter; KEGG: tpt:Tpet_0663 phosphate transporter
YP_001410014.1	PFAM: protein of unknown function DUF47; KEGG: tma:TM0260 hypothetical protein
YP_001410015.1	KEGG: tpe:Tpen_1497 peptidase U34, dipeptidase
YP_001410016.1	TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: lbr:LVIS_1751 superfamily II DNA helicase
YP_001410017.1	KEGG: maq:Maqu_0560 hypothetical protein
YP_001410018.1	PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: msi:Msm_0695 DNA repair helicase
YP_001410019.1	PFAM: SMC domain protein; KEGG: hwa:HQ2080A chromosome segregation protein
YP_001410021.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: afu:AF1409 modification methylase, type III R/M system
YP_001410022.1	PFAM: type III restriction protein res subunit; KEGG: hpy:HP1371 type III restriction enzyme R protein
YP_001410024.1	PFAM: protein of unknown function DUF45; KEGG: csc:Csac_2672 protein of unknown function DUF45
YP_001410025.1	TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases; KEGG: chy:CHY_0832 type I restriction-modification system, R subunit
YP_001410026.1	PFAM: protein of unknown function DUF86; KEGG: csc:Csac_2675 protein of unknown function DUF86
YP_001410027.1	PFAM: DNA polymerase beta domain protein region; KEGG: csc:Csac_2676 DNA polymerase, beta domain protein region
YP_001410028.1	PFAM: restriction modification system DNA specificity domain; KEGG: csc:Csac_2677 restriction modification system DNA specificity domain
YP_001410029.1	TIGRFAM: type I restriction-modification system, M subunit; PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: csc:Csac_2680 type I restriction-modification system, M subunit
YP_001410030.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410031.1	PFAM: protein of unknown function DUF450; KEGG: cpf:CPF_0250 hypothetical protein
YP_001410032.1	PFAM: protein of unknown function DUF190
YP_001410033.1	TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: cpf:CPF_1284 CrcB protein
YP_001410034.1	PFAM: phospholipase/Carboxylesterase; KEGG: tpt:Tpet_0890 phospholipase/carboxylesterase
YP_001410035.1	PFAM: O-antigen polymerase; KEGG: tma:TM0806 hypothetical protein
YP_001410036.1	PFAM: glycosyl transferase family 4; KEGG: tma:TM0805 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
YP_001410038.1	KEGG: cpr:CPR_0357 hypothetical protein
YP_001410039.1	PFAM: UvrD/REP helicase; KEGG: tde:TDE0085 ATP-dependent DNA helicase, UvrD/Rep family
YP_001410040.1	PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: tpt:Tpet_0380 hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit
YP_001410041.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; KEGG: tma:TM0540 fumarate hydratase alpha subunit
YP_001410042.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN1789 Na+ driven multidrug efflux pump
YP_001410043.1	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ter:Tery_1795 short-chain dehydrogenase/reductase SDR
YP_001410044.1	KEGG: tma:TM0106 hypothetical protein
YP_001410045.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: mja:MJ1209m DNA modification methylase
YP_001410046.1	KEGG: mja:MJ1209m DNA modification methylase
YP_001410047.1	PFAM: alpha/beta hydrolase fold; inner-membrane translocator; KEGG: rpa:RPA4044 putative branched-chain amino acid transport system permease protein
YP_001410048.1	PFAM: inner-membrane translocator; KEGG: sth:STH802 branched-chain amino acid ABC transporter permease protein
YP_001410049.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1606 ABC transporter related
YP_001410050.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG
YP_001410051.1	PFAM: Extracellular ligand-binding receptor; KEGG: sth:STH803 putative branched chain amino acid ABC transporter substrate-binding protein
YP_001410052.1	KEGG: tte:TTE0554 acetyl-CoA hydrolase
YP_001410053.1	PFAM: regulatory protein TetR; KEGG: fnu:FN0813 transcriptional regulator, TetR family
YP_001410054.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mxa:MXAN_0215 putative 3-oxoacyl-(acyl-carrier-protein) synthase
YP_001410055.1	KEGG: tpt:Tpet_1658 hypothetical protein
YP_001410056.1	PFAM: nitroreductase; KEGG: pfu:PF0715 NAD(P)H oxidase
YP_001410058.1	KEGG: tma:TM1013 hypothetical protein
YP_001410059.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_0448 ABC transporter, ATP-binding protein
YP_001410060.1	KEGG: csc:Csac_2164 hypothetical protein
YP_001410061.1	PFAM: regulatory protein GntR HTH; Helix-turn-helix type 11 domain protein; KEGG: csc:Csac_2165 regulatory protein GntR, HTH
YP_001410062.1	KEGG: chy:CHY_0445 hypothetical protein
YP_001410063.1	KEGG: bha:BH1848 hypothetical protein
YP_001410064.1	PFAM: amine oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bha:BH1848 hypothetical protein
YP_001410065.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rrs:RoseRS_0015 short-chain dehydrogenase/reductase SDR
YP_001410066.1	KEGG: pfu:PF0719 hypothetical protein
YP_001410067.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: tma:TM1284 oxidase-related protein
YP_001410068.1	PFAM: protein of unknown function DUF205; KEGG: tma:TM1283 hypothetical protein
YP_001410069.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1786 transposase
YP_001410070.1	PFAM: glycosyl transferase family 2; KEGG: oih:OB2458 hypothetical protein
YP_001410071.1	PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_0133 major facilitator superfamily MFS_1 transporter
YP_001410072.1	KEGG: pab:PAB0357 hypothetical protein
YP_001410073.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cya:CYA_2401 peptidase, S8A (subtilisin) family
YP_001410074.1	PFAM: carbohydrate kinase FGGY; KEGG: rfr:Rfer_2334 carbohydrate kinase, FGGY
YP_001410075.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410076.1	PFAM: peptidase S41; KEGG: fjo:Fjoh_3843 peptidase S41
YP_001410077.1	KEGG: cpr:CPR_1436 RNAse H family protein
YP_001410078.1	PFAM: Nucleotidyl transferase; KEGG: tma:TM1033 mannose-1-phosphate guanylyltransferase
YP_001410079.1	KEGG: tpt:Tpet_0298 hypothetical protein
YP_001410080.1	PFAM: glycosyl transferase group 1; KEGG: tpt:Tpet_0297 glycosyl transferase, group 1
YP_001410081.1	PFAM: glycosyl transferase group 1; KEGG: pho:PH1844 hypothetical protein
YP_001410082.1	KEGG: chu:CHU_0929 A-glycosyltransferase-related protein, glycosyltransferase family 4 protein
YP_001410083.1	PFAM: glycosyl transferase group 1; KEGG: stm:STM3719 UDP-D-galactose:(glucosyl)lipopolysaccharide alpha-1,6-D-galactosyltransferase
YP_001410084.1	KEGG: gfo:GFO_1790 glycosyl transferase, group 1
YP_001410085.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tpt:Tpet_0308 UDP-N-acetylglucosamine 2-epimerase
YP_001410086.1	PFAM: glycosyl transferase group 1; KEGG: tma:TM0619 hypothetical protein
YP_001410088.1	PFAM: glycosyl transferase group 1; KEGG: pin:Ping_0454 glycosyl transferase, group 1
YP_001410089.1	PFAM: polysaccharide biosynthesis protein; KEGG: ste:STER_1057 polysaccharide transporter, PST family
YP_001410091.1	PFAM: sugar transferase; KEGG: tpt:Tpet_0296 sugar transferase
YP_001410093.1	KEGG: tpt:Tpet_0305 ATPase
YP_001410094.1	PFAM: glycosyl transferase group 1; KEGG: tma:TM0619 hypothetical protein
YP_001410095.1	PFAM: glycosyl transferase group 1; KEGG: tte:TTE0655 predicted glycosyltransferase
YP_001410096.1	PFAM: polysaccharide biosynthesis protein; KEGG: tma:TM0620 lipopolysaccharide biosynthesis protein
YP_001410097.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ctc:CTC00712 electron transfer flavoprotein alpha-subunit fixB
YP_001410098.1	PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbo:CBO3198 electron transfer flavoprotein beta-subunit
YP_001410099.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: tte:TTE0545 Acyl-CoA dehydrogenases
YP_001410100.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM1835 cyclomaltodextrinase, putative
YP_001410101.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: efa:EF1586 NADH oxidase
YP_001410102.1	PFAM: peptidase M32 carboxypeptidase Taq metallopeptidase; KEGG: gka:GK1545 thermostable carboxypeptidase
YP_001410103.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tpt:Tpet_0409 Mg chelatase, subunit ChlI
YP_001410104.1	PFAM: NUDIX hydrolase; KEGG: cdf:CD1984 NUDIX-family protein
YP_001410105.1	KEGG: tma:TM1573 hypothetical protein
YP_001410106.1	PFAM: PUA domain containing protein; KEGG: tma:TM1697 hypothetical protein
YP_001410107.1	PFAM: FAD dependent oxidoreductase; KEGG: drm:Dred_1730 FAD dependent oxidoreductase
YP_001410108.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: tma:TM0143 response regulator
YP_001410109.1	PFAM: zinc/iron permease; KEGG: tpt:Tpet_1033 zinc/iron permease
YP_001410110.1	PFAM: major facilitator superfamily MFS_1; KEGG: tma:TM0342 permease, putative
YP_001410111.1	PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: pab:PAB2375 aminopeptidase from family M42
YP_001410112.1	PFAM: protein of unknown function DUF81; KEGG: tpt:Tpet_0541 protein of unknown function DUF81
YP_001410113.1	KEGG: tpt:Tpet_1166 UvrB/UvrC protein
YP_001410114.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001410115.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_001410116.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001410117.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001410119.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001410120.1	PFAM: alpha/beta hydrolase fold; KEGG: btl:BALH_4445 alpha/beta hydrolase fold protein
YP_001410121.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: tpt:Tpet_1020 3-oxoacyl-(acyl-carrier-protein) reductase
YP_001410122.1	PFAM: BioY protein; KEGG: pfu:PF1677 biotin synthase, putative
YP_001410123.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: tpt:Tpet_0130 malonyl CoA-acyl carrier protein transacylase
YP_001410124.1	PFAM: 2-nitropropane dioxygenase NPD; KEGG: tpt:Tpet_0128 2-nitropropane dioxygenase, NPD
YP_001410125.1	PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: tpt:Tpet_0127 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
YP_001410126.1	PFAM: Beta-ketoacyl synthase; KEGG: tpt:Tpet_0126 beta-ketoacyl synthase-like protein
YP_001410127.1	PFAM: DegV family protein; KEGG: drm:Dred_3318 DegV family protein
YP_001410128.1	carries the fatty acid chain in fatty acid biosynthesis
YP_001410129.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: tpt:Tpet_1170 glycerophosphoryl diester phosphodiesterase
YP_001410130.1	KEGG: dvl:Dvul_2397 extracellular ligand-binding receptor
YP_001410131.1	KEGG: tpt:Tpet_1157 hypothetical protein
YP_001410132.1	PFAM: protein of unknown function DUF198; KEGG: gur:Gura_4045 protein of unknown function DUF198
YP_001410133.1	PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: tpt:Tpet_0154 ribosomal protein L7Ae/L30e/S12e/Gadd45
YP_001410134.1	PFAM: GCN5-related N-acetyltransferase; KEGG: tma:TM1178 acetyltransferase-related protein
YP_001410135.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: oih:OB2265 hemolysin III
YP_001410137.1	PFAM: cytochrome b5; KEGG: cpf:CPF_2822 heme/steroid binding domain protein
YP_001410138.1	PFAM: extracellular solute-binding protein family 1; KEGG: pin:Ping_2008 ABC transporter extracellular solute-binding protein, family 1
YP_001410139.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2863 sugar ABC transporter, permease protein, putative
YP_001410140.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpl:BURPS1106A_A2816 putative carbohydrate ABC transporter, permease protein
YP_001410141.1	PFAM: NQR2 and RnfD family protein; KEGG: neu:NE2396 Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq2
YP_001410142.1	PFAM: FMN-binding domain protein; KEGG: bfs:BF2067 putative Na+-translocating NADH-quinone reductase subunit C
YP_001410143.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit D; PFAM: RnfA-Nqr electron transport subunit; KEGG: pin:Ping_0749 NADH:ubiquinone oxidoreductase, subunit D
YP_001410144.1	PFAM: RnfA-Nqr electron transport subunit; KEGG: cta:CTA_0303 Na(+)-translocating NADH-quinone reductase subunit E
YP_001410145.1	TIGRFAM: NADH:ubiquinone oxidoreductase, subunit F; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ngo:NGO1418 NqrF
YP_001410147.1	catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins
YP_001410148.1	PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mmq:MmarC5_1182 DEAD/DEAH box helicase domain protein
YP_001410149.1	PFAM: isochorismatase hydrolase; KEGG: tpt:Tpet_0445 isochorismatase hydrolase
YP_001410150.1	PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: tpt:Tpet_1190 3H domain protein
YP_001410151.1	catalyzes the degradation of periplasmic UDP-glucose to uridine, glucose-1-phosphate and inorganic phosphate; specific for uridine nucleotides
YP_001410152.1	KEGG: gur:Gura_1501 protein of unknown function DUF155
YP_001410153.1	KEGG: tma:TM1409 hypothetical protein
YP_001410154.1	PFAM: glycosyl transferase group 1; KEGG: tma:TM1405 lipopolysaccharide biosynthesis protein-related protein
YP_001410155.1	PFAM: peptidylprolyl isomerase FKBP-type; KEGG: mem:Memar_1765 peptidylprolyl isomerase, FKBP-type
YP_001410156.1	PFAM: major facilitator superfamily MFS_1; KEGG: bha:BH3482 multidrug-efflux transporter
YP_001410157.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: tpt:Tpet_1227 signal recognition particle protein
YP_001410158.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001410159.1	KEGG: tpt:Tpet_1225 RNA-binding protein (contains KH domain)-like protein
YP_001410160.1	TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: tpt:Tpet_1224 16S rRNA processing protein RimM
YP_001410161.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001410162.1	KEGG: tpt:Tpet_1222 uncharacterized protein-like protein
YP_001410163.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001410164.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: tpt:Tpet_1220 signal peptidase I
YP_001410167.1	KEGG: sce:YIR006C Pan1p
YP_001410169.1	PFAM: CBS domain containing protein; ATP-binding region ATPase domain protein; KEGG: tpt:Tpet_1429 putative anti-sigma regulatory factor, serine/threonine protein kinase
YP_001410170.1	PFAM: CoA-binding domain protein; KEGG: tpt:Tpet_1359 CoA-binding domain protein
YP_001410171.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM0037 hypothetical protein
YP_001410172.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: tpt:Tpet_1203 translation initiation factor IF-3
YP_001410173.1	PFAM: ribosomal protein L35; KEGG: tpt:Tpet_1202 ribosomal protein L35
YP_001410174.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001410175.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tma:TM0876 hypothetical protein
YP_001410176.1	KEGG: tma:TM1348 hypothetical protein
YP_001410177.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tpt:Tpet_0346 DegT/DnrJ/EryC1/StrS aminotransferase
YP_001410178.1	TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tma:TM0573 putative apolipoprotein N-acyltransferase
YP_001410179.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_1031 replicative DNA helicase
YP_001410180.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001410181.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0705 ABC transporter, ATP-binding protein
YP_001410182.1	PFAM: DNA polymerase III delta; KEGG: tpt:Tpet_0743 DNA polymerase III, delta subunit
YP_001410183.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001410184.1	PFAM: TM1410 hypothetical-related protein; KEGG: tma:TM1410 cysteinyl-tRNA synthetase, putative
YP_001410185.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001410186.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: tma:TM0604 single stranded DNA-binding protein, putative
YP_001410187.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001410188.1	PFAM: major facilitator superfamily MFS_1; KEGG: lca:LSEI_0429 permease of the major facilitator superfamily
YP_001410189.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: tpt:Tpet_0272 rubredoxin-type Fe(Cys)4 protein
YP_001410190.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001410191.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001410192.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001410193.1	PFAM: protein of unknown function UPF0027; KEGG: tma:TM1357 hypothetical protein
YP_001410194.1	PFAM: major facilitator superfamily MFS_1; KEGG: tma:TM0563 hypothetical protein
YP_001410195.1	PFAM: ribonuclease H; KEGG: gfo:GFO_1824 RecD-like exodeoxyribonuclease
YP_001410196.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: tpt:Tpet_0924 Orn/DAP/Arg decarboxylase 2
YP_001410197.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain)
YP_001410198.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001410199.1	KEGG: tpt:Tpet_1217 FOG: WD40-like repeat-like protein
YP_001410200.1	TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: tpt:Tpet_1216 hemolysin A
YP_001410201.1	KEGG: tpt:Tpet_1215 hypothetical protein
YP_001410202.1	PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: tma:TM0702 chemotaxis sensor histidine kinase CheA
YP_001410203.1	PFAM: CheW domain protein; KEGG: tpt:Tpet_0229 putative CheW protein
YP_001410204.1	PFAM: response regulator receiver; KEGG: tpt:Tpet_0230 response regulator receiver protein
YP_001410205.1	KEGG: tpt:Tpet_0231 hypothetical protein
YP_001410206.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_001410207.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: tpt:Tpet_0233 flagellar biosynthetic protein FliQ
YP_001410208.1	PFAM: thymidylate kinase; KEGG: tpt:Tpet_1644 dTMP kinase
YP_001410209.1	PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tpt:Tpet_1362 FAD dependent oxidoreductase
YP_001410210.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_1361 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_001410211.1	PFAM: protein of unknown function DUF1667; KEGG: tma:TM1434 hypothetical protein
YP_001410212.1	PFAM: ribonuclease III; KEGG: tma:TM1740 hypothetical protein
YP_001410213.1	KEGG: cpe:CPE1656 hypothetical protein
YP_001410214.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: tpt:Tpet_1107 HflK protein
YP_001410215.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: tpt:Tpet_1108 HflC protein
YP_001410216.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_001410218.1	KEGG: tpt:Tpet_1144 hypothetical protein
YP_001410219.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tpt:Tpet_1143 metal dependent phosphohydrolase
YP_001410220.1	PFAM: protein of unknown function DUF503; KEGG: tpt:Tpet_1142 protein of unknown function DUF503
YP_001410221.1	heat shock protein involved in degradation of misfolded proteins
YP_001410222.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: tpt:Tpet_0075 SUA5/YciO/YrdC/YwlC family protein
YP_001410223.1	SMART: phospholipase D/Transphosphatidylase; KEGG: tpt:Tpet_0279 phospholipase D/transphosphatidylase
YP_001410224.1	PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_0539 ABC-2 type transporter
YP_001410225.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0389 putative ABC-2 type transport system ATP-binding protein
YP_001410226.1	PFAM: ABC-2 type transporter; KEGG: tma:TM0387 putative ABC-2 type transport system permease protein
YP_001410227.1	PFAM: S-layer domain protein; RepA / Rep KID repeat-containing protein; KEGG: ddi:DDBDRAFT_0188916 hypothetical protein
YP_001410228.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_1191 radical SAM domain protein
YP_001410229.1	KEGG: tma:TM1600 hypothetical protein
YP_001410231.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: tpt:Tpet_1194 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_001410232.1	PFAM: protein of unknown function DUF72; KEGG: tma:TM1631 hypothetical protein
YP_001410233.1	PFAM: UvrD/REP helicase; KEGG: tma:TM1238 ATP-dependent DNA helicase
YP_001410234.1	PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: chy:CHY_2227 PHP domain protein
YP_001410235.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1558 hypothetical protein
YP_001410237.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001410238.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tpt:Tpet_0190 metal dependent phosphohydrolase
YP_001410239.1	PFAM: Insertion element protein; KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410240.1	PFAM: protein of unknown function DUF107; KEGG: tpt:Tpet_0062 protein of unknown function DUF107
YP_001410241.1	PFAM: band 7 protein; KEGG: tpt:Tpet_0061 band 7 protein
YP_001410242.1	KEGG: tma:TM0867 hypothetical protein
YP_001410243.1	PFAM: peptidase M29 aminopeptidase II; KEGG: cpr:CPR_1965 aminopeptidase
YP_001410244.1	catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM
YP_001410245.1	PFAM: ComEC/Rec2-related protein; KEGG: tpt:Tpet_1063 ComEC/Rec2-related protein
YP_001410246.1	PFAM: ferric-uptake regulator; KEGG: tma:TM1776 ferric uptake regulation protein
YP_001410247.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001410248.1	PFAM: protein of unknown function DUF150; KEGG: tma:TM1778 hypothetical protein
YP_001410250.1	PFAM: triosephosphate isomerase; KEGG: tpt:Tpet_0241 triose-phosphate isomerase
YP_001410251.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001410252.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: tma:TM0688 glyceraldehyde-3-phosphate dehydrogenase
YP_001410253.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: bth:BT_3019 putative Na+/Ca2+ exchanger protein, cation antiporter
YP_001410254.1	TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; O-methyltransferase family 3; KEGG: mma:MM1706 protein-L-isoaspartate O-methyltransferase
YP_001410255.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: tma:TM1701 hypothetical protein
YP_001410256.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_001410257.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410258.1	this fusion consists of methionine sulfoxide B reductase at the N-terminus and A at the C-terminus; A and B are stereospecific enzymes that recognize the damaged produces of oxidative stress, S and R epimers of methionine sulfoxide, respectively; a fusion protein of these enzymes with thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae
YP_001410259.1	PFAM: Silent information regulator protein Sir2; KEGG: tpt:Tpet_0430 silent information regulator protein Sir2
YP_001410260.1	PFAM: SMC domain protein; KEGG: fnu:FN0522 exonuclease SBCC
YP_001410261.1	PFAM: metallophosphoesterase; KEGG: fnu:FN0523 exonuclease SBCD
YP_001410264.1	PFAM: nuclease (SNase domain protein); KEGG: chy:CHY_1698 prophage LambdaCh01, nuclease domain protein
YP_001410265.1	PFAM: Alkaline phosphatase; KEGG: tpt:Tpet_0770 alkaline phosphatase
YP_001410266.1	KEGG: ddi:DDBDRAFT_0183813 hypothetical protein
YP_001410267.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: pth:PTH_0006 hypothetical membrane protein
YP_001410268.1	KEGG: tma:TM0218 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase
YP_001410269.1	KEGG: tpt:Tpet_0705 flagellar biosynthesis/type III secretory pathway protein-like protein
YP_001410270.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001410271.1	TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; KEGG: tpt:Tpet_0651 fructose-1,6-bisphosphate aldolase, class II
YP_001410272.1	PFAM: TrkA-C domain protein; Chloride channel core; KEGG: cno:NT01CX_0195 voltage gated chloride channel family protein
YP_001410273.1	Required for the synthesis of the thiazole moiety
YP_001410274.1	PFAM: PEBP family protein; KEGG: pho:PH1269 hypothetical protein
YP_001410275.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_0251 short-chain dehydrogenase/reductase SDR
YP_001410276.1	KEGG: tma:TM0817 hypothetical protein
YP_001410277.1	TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD synthase; KEGG: rxy:Rxyl_2763 NAD+ synthetase
YP_001410278.1	KEGG: gme:Gmet_2595 hypothetical protein
YP_001410279.1	KEGG: tma:TM0269 hypothetical protein
YP_001410280.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cac:CAC2540 Co/Zn/Cd efflux system component
YP_001410281.1	PFAM: regulatory protein ArsR; KEGG: cbo:CBO0477 ArsR-family transcriptional regulator
YP_001410282.1	PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: tma:TM0268 5-methyltetrahydrofolate S-homocysteine methyltransferase
YP_001410285.1	KEGG: tma:TM0271 hypothetical protein
YP_001410286.1	PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: tma:TM1726 alanyl-tRNA synthetase-related protein
YP_001410287.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001410288.1	PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tma:TM1581 hypothetical protein
YP_001410289.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM1836 maltose transport system permease protein
YP_001410290.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0967 binding-protein-dependent transport systems inner membrane component
YP_001410291.1	PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_0966 extracellular solute-binding protein, family 1
YP_001410292.1	KEGG: tko:TK2200 hypothetical protein
YP_001410293.1	KEGG: tpt:Tpet_0147 hypothetical protein
YP_001410294.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase
YP_001410295.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bha:BH0372 two-component response regulator
YP_001410297.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM1103 hypothetical protein
YP_001410298.1	PFAM: GatB/Yqey domain protein; KEGG: tma:TM0690 hypothetical protein
YP_001410299.1	PFAM: histone deacetylase superfamily; KEGG: tdn:Tmden_1813 histone deacetylase superfamily
YP_001410300.1	TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: tpt:Tpet_1664 ribose 5-phosphate isomerase B
YP_001410301.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tma:TM1081 anti-sigma factor antagonist, putative
YP_001410302.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gur:Gura_2044 anti-sigma-factor antagonist
YP_001410303.1	TIGRFAM: LexA repressor; PFAM: peptidase S24 S26A and S26B; LexA DNA-binding domain protein; KEGG: tma:TM1082 lexA repressor
YP_001410304.1	KEGG: tpt:Tpet_1661 protein of unknown function DUF101
YP_001410305.1	TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; KEGG: tpt:Tpet_1660 DNA gyrase, A subunit
YP_001410306.1	TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; KEGG: tpt:Tpet_1659 methionyl-tRNA synthetase
YP_001410307.1	PFAM: Peptidoglycan-binding LysM; KEGG: bce:BC3687 2',3'-cyclic-nucleotide 2'-phosphodiesterase
YP_001410308.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_001410309.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410310.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: tma:TM0667 putative deoxyribonuclease
YP_001410311.1	TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: tma:TM0165 Holliday junction DNA helicase
YP_001410312.1	KEGG: tpt:Tpet_0191 hypothetical protein
YP_001410313.1	KEGG: tpt:Tpet_1430 hypothetical protein
YP_001410314.1	KEGG: tpt:Tpet_1431 PHP C-terminal domain protein
YP_001410315.1	PFAM: ATP-binding region ATPase domain protein; KEGG: tma:TM1665 hypothetical protein
YP_001410316.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: tpt:Tpet_0472 surface antigen (D15)
YP_001410317.1	Responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine = 7-oxoG) from DNA. Also nicks DNA at apurinic/apyrimidinic sites
YP_001410318.1	TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein; KEGG: tma:TM0843 formiminotransferase- cyclodeaminase/formiminotetrahydrofolate cyclodeaminase, putative
YP_001410319.1	PFAM: aldo/keto reductase; KEGG: tpt:Tpet_0604 aldo/keto reductase
YP_001410320.1	PFAM: amidohydrolase; KEGG: tma:TM0814 N-acetylglucosamine-6-phosphate deacetylase
YP_001410321.1	PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: tma:TM1851 alpha-mannosidase
YP_001410322.1	KEGG: csc:Csac_2301 hypothetical protein
YP_001410323.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM1132 moxR protein, putative
YP_001410324.1	KEGG: lin:lin1546 hypothetical protein
YP_001410325.1	PFAM: protein of unknown function DUF123; SMART: Excinuclease ABC C subunit domain protein; KEGG: pho:PH0629 hypothetical protein
YP_001410327.1	PFAM: protein of unknown function DUF58; KEGG: tpt:Tpet_1612 protein of unknown function DUF58
YP_001410328.1	PFAM: WD-40 repeat protein; KEGG: tet:TTHERM_00400790 hypothetical protein Pfam: WD40 Pox_int_trans YTH
YP_001410329.1	PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes
YP_001410330.1	KEGG: tma:TM1180 hypothetical protein
YP_001410331.1	PFAM: flagellar protein FliS; KEGG: tpt:Tpet_1574 flagellar protein FliS
YP_001410332.1	PFAM: CheW domain protein; KEGG: tma:TM0718 purine-binding chemotaxis protein
YP_001410333.1	KEGG: tpt:Tpet_1800 hypothetical protein
YP_001410334.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tpt:Tpet_1802 pseudouridine synthase, RluA family
YP_001410335.1	PFAM: purine or other phosphorylase family 1; KEGG: tma:TM1129 5-methylthioadenosine / S-adenosylhomocysteine nucleosidase
YP_001410336.1	PFAM: CheC domain protein; KEGG: tpt:Tpet_1173 CheC domain protein
YP_001410337.1	PFAM: GTP-binding protein HSR1-related; KEGG: tma:TM0768 hypothetical protein
YP_001410338.1	Catalyzes the phosphorylation of UMP to UDP
YP_001410339.1	KEGG: tpt:Tpet_0384 hypothetical protein
YP_001410341.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: tpt:Tpet_0425 PhoH family protein
YP_001410342.1	TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: tpt:Tpet_0424 DNA polymerase III, epsilon subunit
YP_001410343.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001410344.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: tma:TM0221 flagellar M-ring protein
YP_001410345.1	PFAM: protein of unknown function DUF177; KEGG: tma:TM0151 hypothetical protein
YP_001410346.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001410347.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001410348.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_001410349.1	binds and unfolds substrates as part of the ClpXP protease
YP_001410350.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001410351.1	KEGG: tma:TM1395 hypothetical protein
YP_001410352.1	KEGG: tpt:Tpet_1254 hypothetical protein
YP_001410353.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_001410354.1	PFAM: flagellar L-ring protein; KEGG: tpt:Tpet_1252 flagellar L-ring protein
YP_001410355.1	KEGG: tpt:Tpet_1251 SAF domain
YP_001410356.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001410357.1	binds directly to 23S ribosomal RNA
YP_001410358.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides Ouzounis Woese) domain protein; KEGG: tma:TM0453 N utilization substance protein G
YP_001410359.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: tpt:Tpet_0468 preprotein translocase, SecE subunit
YP_001410360.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001410361.1	PFAM: OsmC family protein; KEGG: tma:TM0919 putative redox protein
YP_001410362.1	PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: tma:TM1141 cytochrome C-type biogenesis protein, putative
YP_001410363.1	KEGG: tpt:Tpet_1603 thioredoxin-related protein-like protein
YP_001410364.1	TIGRFAM: glutaredoxin-like protein, YruB-family; PFAM: glutaredoxin; KEGG: tpt:Tpet_1719 glutaredoxin-like protein, YruB-family
YP_001410365.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; HI0933 family protein; KEGG: tma:TM0869 thioredoxin reductase
YP_001410366.1	TIGRFAM: glutaredoxin-like domain protein; KEGG: tma:TM0868 glutaredoxin-related protein
YP_001410367.1	KEGG: tma:TM1022 carboxylesterase
YP_001410368.1	PFAM: transport system permease protein; ABC-3 protein; KEGG: tpt:Tpet_0799 ABC-3 protein
YP_001410369.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0124 zinc transport system ATP-binding protein
YP_001410370.1	PFAM: periplasmic solute binding protein; KEGG: tma:TM0123 zinc transport system substrate-binding protein
YP_001410371.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0825 AstB/ChuR-related protein
YP_001410372.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tpt:Tpet_0905 thiamine pyrophosphate enzyme domain protein TPP-binding
YP_001410373.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tpt:Tpet_0906 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
YP_001410374.1	TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpt:Tpet_0907 pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
YP_001410375.1	TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tpt:Tpet_0908 pyruvate/ketoisovalerate oxidoreductase, gamma subunit
YP_001410376.1	PFAM: glycoside hydrolase family 57; Domain of unknown function DUF1957; KEGG: tpt:Tpet_1356 domain of unknown function DUF1957
YP_001410377.1	KEGG: tpt:Tpet_1355 uncharacterized protein-like protein
YP_001410378.1	PFAM: PfkB domain protein; KEGG: ctc:CTC00909 ribokinase
YP_001410379.1	KEGG: dge:Dgeo_0875 hypothetical protein
YP_001410380.1	KEGG: tma:TM0606 hypothetical protein
YP_001410381.1	PFAM: phosphate transporter; KEGG: tpt:Tpet_0010 phosphate transporter
YP_001410382.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001410383.1	catalyzes the formation of D-fructose 6-phosphate from D-glucose 6-phosphate
YP_001410385.1	TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: tpt:Tpet_1396 dephospho-CoA kinase
YP_001410387.1	TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: tma:TM0645 NH(3)-dependent NAD(+) synthetase, putative
YP_001410388.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: tma:TM1359 sensor histidine kinase
YP_001410389.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001410390.1	PFAM: protein of unknown function DUF342; KEGG: tma:TM0735 hypothetical protein
YP_001410391.1	PFAM: mannose-6-phosphate isomerase type I; KEGG: tma:TM0736 mannose-6-phosphate isomerase
YP_001410392.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: tpt:Tpet_0269 acyl carrier protein
YP_001410393.1	PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: gme:Gmet_1295 peptidase M3B, oligoendopeptidase-related clade 3
YP_001410394.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001410395.1	PFAM: MscS Mechanosensitive ion channel; KEGG: tpt:Tpet_1229 MscS mechanosensitive ion channel
YP_001410396.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001410397.1	PFAM: Rubrerythrin; KEGG: csc:Csac_1137 rubrerythrin
YP_001410398.1	PFAM: glutaredoxin 2; KEGG: dsy:DSY1443 hypothetical protein
YP_001410399.1	PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: tpt:Tpet_0327 peptidoglycan glycosyltransferase
YP_001410400.1	PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: tma:TM0715 tRNA nucleotidyltransferase (CCA-adding enzyme)
YP_001410401.1	KEGG: tpt:Tpet_0192 uncharacterized protein-like protein
YP_001410402.1	PFAM: beta-lactamase domain protein; KEGG: tma:TM0864 hypothetical protein
YP_001410403.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001410404.1	TIGRFAM: modification methylase, HemK family; KEGG: tma:TM0488 putative protoporphyrinogen oxidase
YP_001410405.1	PFAM: protein of unknown function DUF59; KEGG: tma:TM0487 hypothetical protein
YP_001410406.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001410407.1	PFAM: protein of unknown function DUF124; KEGG: tma:TM0367 hypothetical protein
YP_001410408.1	PFAM: phosphoribosyltransferase; KEGG: chy:CHY_1503 pyrimidine regulatory protein PyrR
YP_001410410.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_001410411.1	PFAM: Formiminotransferase-cyclodeaminase; KEGG: tpt:Tpet_1232 formiminotransferase-cyclodeaminase
YP_001410412.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410413.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0575 hypothetical protein
YP_001410414.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: tma:TM0528 methionyl-tRNA formyltransferase
YP_001410415.1	KEGG: tpt:Tpet_1402 hypothetical protein
YP_001410416.1	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: tpt:Tpet_0767 prolipoprotein diacylglyceryl transferase
YP_001410417.1	KEGG: tpa:TP0996 hypothetical protein
YP_001410419.1	PFAM: chemotaxis sensory transducer; KEGG: hma:rrnAC0404 MCP domain signal transducer
YP_001410420.1	PFAM: response regulator receiver; SMART: GGDEF domain containing protein; KEGG: tma:TM0143 response regulator
YP_001410421.1	KEGG: fjo:Fjoh_3351 CheB methylesterase
YP_001410422.1	PFAM: response regulator receiver; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: ade:Adeh_0613 CheA signal transduction histidine kinase
YP_001410424.1	PFAM: MCP methyltransferase CheR-type; KEGG: cjj:CJJ81176_0930 chemotaxis protein methyltransferase CheR
YP_001410425.1	PFAM: conserved hypothetical protein; KEGG: tma:TM1055 hypothetical protein
YP_001410426.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: tma:TM0586 hypothetical protein
YP_001410427.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: tpt:Tpet_1248 cell shape determining protein, MreB/Mrl family
YP_001410428.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_1249 protein of unknown function DUF1078 domain protein
YP_001410429.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_1250 flagellar basal-body rod protein FlgG
YP_001410430.1	KEGG: tma:TM1637 hypothetical protein
YP_001410431.1	PFAM: protein of unknown function DUF205; KEGG: tma:TM1447 hypothetical protein
YP_001410432.1	KEGG: tpt:Tpet_1346 tetratricopeptide TPR_2 repeat protein
YP_001410433.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tma:TM1449 hypothetical protein
YP_001410434.1	KEGG: tpt:Tpet_1135 hypothetical protein
YP_001410435.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: tma:TM1693 1-acyl-sn-glycerol-3-phosphate acyltransferase
YP_001410436.1	PFAM: protein of unknown function DUF151; KEGG: tpt:Tpet_0765 protein of unknown function DUF151
YP_001410437.1	KEGG: tpt:Tpet_0763 hypothetical protein
YP_001410438.1	KEGG: tma:TM0743 hypothetical protein
YP_001410439.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001410440.1	KEGG: cte:CT0814 hypothetical protein
YP_001410441.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM0930 hypothetical protein
YP_001410443.1	TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: tte:TTE2667 hypothetical protein
YP_001410444.1	TIGRFAM: CRISPR-associated protein, TM1802 family; CRISPR-associated protein, Csh1 family; KEGG: csc:Csac_0056 CRISPR-associated protein, Csh1 family
YP_001410445.1	TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csh2 family; PFAM: CRISPR-associated protein TM1801; KEGG: csc:Csac_0057 CRISPR-associated protein, Csh2 family
YP_001410446.1	TIGRFAM: CRISPR-associated protein Cas5, Hmari subtype; CRISPR-associated protein Cas5; KEGG: csc:Csac_0058 CRISPR-associated protein Cas5
YP_001410447.1	TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: csc:Csac_0063 CRISPR-associated helicase Cas3
YP_001410448.1	TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: csc:Csac_0064 CRISPR-associated protein Cas4
YP_001410449.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: csc:Csac_0065 CRISPR-associated protein Cas1
YP_001410450.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: drm:Dred_0542 CRISPR-associated protein Cas2
YP_001410451.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: tma:TM1722 hypothetical protein
YP_001410452.1	PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD0170 putative ABC transporter, ATP-binding protein
YP_001410453.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_0233 GCN5-related N-acetyltransferase
YP_001410454.1	KEGG: tpt:Tpet_0556 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2
YP_001410455.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: tpt:Tpet_0739 activator of HSP90 ATPase 1 family protein
YP_001410456.1	TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: tpt:Tpet_0039 thiamine pyrophosphokinase
YP_001410457.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001410458.1	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tma:TM0890 hypothetical zinc metalloprotease
YP_001410459.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001410460.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001410461.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001410463.1	KEGG: csc:Csac_2547 hypothetical protein
YP_001410464.1	PFAM: protein of unknown function DUF541; KEGG: csc:Csac_1122 protein of unknown function DUF541
YP_001410465.1	PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cbo:CBO3619 phosphoglucomutase/phosphomannomutase
YP_001410467.1	TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: tpt:Tpet_0018 flagellar biosynthetic protein FlhB
YP_001410468.1	PFAM: type III secretion system inner membrane R protein; KEGG: tpt:Tpet_0017 flagellar biosynthetic protein FliR
YP_001410469.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0243 hypothetical protein
YP_001410470.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0043 ABC transporter, ATP-binding protein
YP_001410471.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tpt:Tpet_0402 putative GAF sensor protein
YP_001410472.1	PFAM: RNA-binding S4 domain protein; KEGG: lga:LGAS_0272 ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
YP_001410473.1	KEGG: tma:TM0833 DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II
YP_001410475.1	PFAM: aminotransferase class IV; KEGG: tpt:Tpet_0096 aminotransferase, class IV
YP_001410476.1	KEGG: tma:TM0830 conserved hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB
YP_001410477.1	PFAM: CBS domain containing protein; KEGG: tpt:Tpet_0098 CBS domain containing protein
YP_001410478.1	PFAM: PfkB domain protein; KEGG: tma:TM0828 sugar kinase, PfkB family
YP_001410479.1	KEGG: tma:TM0827 ABC transporter, ATP-binding protein, putative
YP_001410480.1	PFAM: aminotransferase class I and II; KEGG: tma:TM1255 aspartate aminotransferase
YP_001410481.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_001410482.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_001410483.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001410484.1	PFAM: Quinolinate phosphoribosyl transferase; KEGG: tpt:Tpet_0446 nicotinic acid phosphoribosyltransferase-like protein
YP_001410485.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tpt:Tpet_0158 radical SAM domain protein
YP_001410486.1	KEGG: tpt:Tpet_1017 hypothetical protein
YP_001410487.1	PFAM: Rhomboid family protein; KEGG: tpt:Tpet_0334 rhomboid family protein
YP_001410488.1	PFAM: conserved hypothetical protein; KEGG: tpt:Tpet_0244 conserved hypothetical protein 103
YP_001410489.1	PFAM: ApbE family lipoprotein; KEGG: tma:TM1553 thiamine biosynthesis lipoprotein
YP_001410490.1	PFAM: Radical SAM domain protein; KEGG: tpt:Tpet_1240 radical SAM domain protein
YP_001410491.1	PFAM: DNA polymerase III alpha subunit; KEGG: tpt:Tpet_0459 DNA polymerase III, alpha subunit
YP_001410492.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: tpt:Tpet_1014 ribulose-phosphate 3-epimerase
YP_001410493.1	PFAM: PhoH family protein; KH type 1 domain protein; KEGG: tma:TM1507 phoH-related protein
YP_001410494.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1508 hypothetical protein
YP_001410495.1	PFAM: protein of unknown function UPF0054; KEGG: tma:TM1509 hypothetical protein
YP_001410496.1	PFAM: beta-lactamase domain protein; KEGG: tma:TM0681 dehydrase-related protein
YP_001410497.1	PFAM: polysaccharide pyruvyl transferase; KEGG: tma:TM0682 hypothetical protein
YP_001410498.1	PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tpt:Tpet_0696 NADH dehydrogenase (quinone)
YP_001410499.1	TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tpt:Tpet_0697 NADH-quinone oxidoreductase, E subunit
YP_001410500.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tpt:Tpet_0913 NADH dehydrogenase (quinone)
YP_001410501.1	KEGG: tpt:Tpet_0912 ferredoxin-like protein
YP_001410502.1	PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: tma:TM0012 NADH dehydrogenase I chain E
YP_001410503.1	PFAM: protein of unknown function DUF6 transmembrane; KEGG: csc:Csac_0785 protein of unknown function DUF6, transmembrane
YP_001410504.1	PFAM: protein of unknown function DUF861 cupin_3; KEGG: tma:TM1112 hypothetical protein
YP_001410505.1	PFAM: peptidase C15 pyroglutamyl peptidase I; KEGG: pfu:PF1299 pyroglutamyl-peptidase I
YP_001410506.1	PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: bce:BC1006 sigma factor SigB regulation protein RsbU
YP_001410507.1	PFAM: SMC domain protein; KEGG: tte:TTE1302 ATPases involved in DNA repair
YP_001410508.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: btl:BALH_1677 cytidine deaminase
YP_001410509.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: tma:TM0845 hemolysin-related protein
YP_001410510.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; KEGG: tma:TM1184 PleD-related protein
YP_001410511.1	KEGG: tpt:Tpet_0386 hypothetical protein
YP_001410512.1	PFAM: cell cycle protein; KEGG: tma:TM0839 rod shape-determining protein RodA
YP_001410513.1	PFAM: phosphoadenosine phosphosulfate reductase; PP-loop domain protein; KEGG: tpt:Tpet_0727 PP-loop domain protein
YP_001410514.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tma:TM0571 heat shock serine protease, periplasmic
YP_001410515.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0991 tetratricopeptide TPR_2 repeat protein
YP_001410516.1	PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tpt:Tpet_0992 peptidase A24A domain protein
YP_001410517.1	PFAM: Lytic transglycosylase catalytic; KEGG: tpt:Tpet_0006 lytic transglycosylase, catalytic
YP_001410518.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: tpt:Tpet_0005 carbohydrate kinase, YjeF related protein
YP_001410519.1	KEGG: tva:TVAG_355490 viral A-type inclusion protein, putative
YP_001410520.1	TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; KEGG: tma:TM0925 tRNA (guanine-N7-)-methyltransferase
YP_001410521.1	PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: tpt:Tpet_0529 glycerol-3-phosphate dehydrogenase (NAD(P)(+))
YP_001410522.1	TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: tma:TM0913 mazG protein
YP_001410523.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: tma:TM1741 putative tRNA/rRNA methyltransferase
YP_001410525.1	PFAM: putative RNA methylase; KEGG: cdf:CD1780 putative methylase
YP_001410526.1	catalyzes branch migration in Holliday junction intermediates
YP_001410527.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001410529.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001410530.1	PFAM: ribosomal protein L28; KEGG: tpt:Tpet_0669 ribosomal protein L28
YP_001410531.1	TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: mmq:MmarC5_0063 alanine racemase
YP_001410532.1	TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tpt:Tpet_0667 metal dependent phosphohydrolase
YP_001410533.1	KEGG: tpt:Tpet_0666 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein
YP_001410534.1	PFAM: metallophosphoesterase; KEGG: tma:TM0742 serine/threonine protein phosphatase
YP_001410535.1	PFAM: protein of unknown function DUF368; KEGG: bha:BH2069 hypothetical protein
YP_001410536.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001410537.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001410538.1	PFAM: TGS domain protein; Protein of unknown function DUF933; KEGG: pth:PTH_0927 predicted GTPase, probable translation factor
YP_001410539.1	KEGG: tpt:Tpet_0768 hypothetical protein
YP_001410540.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0182 hypothetical protein
YP_001410541.1	PFAM: Stage V sporulation protein S; KEGG: tpt:Tpet_1692 stage V sporulation protein S
YP_001410542.1	PFAM: Cupin 2 conserved barrel domain protein; KEGG: tpt:Tpet_1335 cupin 2, conserved barrel domain protein
YP_001410543.1	PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: tpt:Tpet_1334 single-stranded nucleic acid binding R3H domain protein
YP_001410544.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: tpt:Tpet_1333 60 kDa inner membrane insertion protein
YP_001410545.1	PFAM: protein of unknown function DUF37; KEGG: tpt:Tpet_1332 protein of unknown function DUF37
YP_001410546.1	TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: tma:TM1463 ribonuclease P protein component
YP_001410547.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_001410548.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ret:RHE_PE00334 hypothetical protein
YP_001410549.1	PFAM: protein of unknown function DUF81; KEGG: tde:TDE0189 membrane protein, putative
YP_001410550.1	PFAM: protein of unknown function DUF125 transmembrane; KEGG: tet:TTHERM_00927170 Integral membrane protein Pfam: DUF125 DUF1700
YP_001410552.1	TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; KEGG: ctc:CTC01945 succinyl-diaminopimelate desuccinylase
YP_001410553.1	KEGG: tpt:Tpet_1590 hypothetical protein
YP_001410554.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: tma:TM1160 esterase
YP_001410555.1	PFAM: NLP/P60 protein; KEGG: pto:PTO0017 hypothetical membrane associated protein
YP_001410556.1	KEGG: tpt:Tpet_0878 hypothetical protein
YP_001410557.1	KEGG: tma:TM0639 hypothetical protein
YP_001410558.1	PFAM: Auxin Efflux Carrier; KEGG: tpt:Tpet_0496 auxin efflux carrier
YP_001410559.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001410560.1	TIGRFAM: glycyl-tRNA synthetase, beta subunit; KEGG: tma:TM0217 glycyl-tRNA synthetase beta chain
YP_001410562.1	PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: tpt:Tpet_0324 extracellular solute-binding protein, family 3
YP_001410563.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0325 polar amino acid ABC transporter, inner membrane subunit
YP_001410564.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_0326 ABC transporter related
YP_001410565.1	PFAM: nucleic acid binding OB-fold tRNA/helicase-type; KEGG: oih:OB0499 hypothetical protein
YP_001410567.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ttj:TTHA0286 serine protease, subtilase family
YP_001410568.1	KEGG: ttj:TTHA0285 hypothetical protein
YP_001410569.1	PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: tma:TM1015 glutamate dehydrogenase
YP_001410570.1	PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; Acetyl xylan esterase; KEGG: tte:TTE2342 dipeptidyl aminopeptidase/acylaminoacyl-peptidase
YP_001410571.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1515 ABC transporter related
YP_001410572.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM0972 conserved hypothetical protein, GGDEF domain
YP_001410573.1	PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ttj:TTHA0286 serine protease, subtilase family
YP_001410574.1	KEGG: ttj:TTHA0285 hypothetical protein
YP_001410575.1	KEGG: tma:TM1126 hypothetical protein
YP_001410578.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tma:TM1163 conserved hypothetical protein, GGDEF domain
YP_001410579.1	PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: tde:TDE1299 hypothetical protein
YP_001410580.1	blocks the formation of polar Z-ring septums
YP_001410581.1	PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: tma:TM1048 endoglucanase
YP_001410582.1	PFAM: peptidase M42 family protein; KEGG: tma:TM1049 endoglucanase
YP_001410583.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410584.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001410585.1	PFAM: ExsB family protein; KEGG: tma:TM1075 hypothetical protein
YP_001410586.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001410587.1	PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lbl:LBL_1710 site-specific recombinase XerD
YP_001410588.1	KEGG: tpt:Tpet_0200 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region
YP_001410589.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001410590.1	PFAM: protein of unknown function DUF208; KEGG: tma:TM0731 hypothetical protein
YP_001410592.1	KEGG: tma:TM0733 sigma-B regulator, putative
YP_001410593.1	PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: tma:TM1239 hypothetical protein
YP_001410594.1	PFAM: Lytic transglycosylase catalytic; KEGG: tpt:Tpet_0246 lytic transglycosylase, catalytic
YP_001410595.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN0882 hemin transport system ATP-binding protein hmuV
YP_001410596.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: tpt:Tpet_0108 uracil-xanthine permease
YP_001410597.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_001410598.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: csc:Csac_1630 phosphoribosylaminoimidazole carboxylase, catalytic subunit
YP_001410599.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001410600.1	TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; KEGG: tpt:Tpet_1527 phosphoribosylformylglycinamidine synthase, PurS
YP_001410601.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001410602.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001410603.1	KEGG: tpt:Tpet_0443 S-layer domain protein
YP_001410604.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1682 hypothetical protein
YP_001410605.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tma:TM1143 methyl-accepting chemotaxis protein
YP_001410606.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aha:AHA_1572 HD domain protein
YP_001410607.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tma:TM0462 conserved hypothetical protein
YP_001410608.1	PFAM: MCP methyltransferase CheR-type; KEGG: tma:TM0464 putative chemotaxis protein methyltransferase
YP_001410610.1	PFAM: protein of unknown function DUF28; KEGG: tma:TM0466 hypothetical protein
YP_001410611.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001410612.1	PFAM: trigger factor domain protein; KEGG: tpt:Tpet_0236 trigger factor, C-terminal domain protein
YP_001410613.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001410614.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001410615.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001410616.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001410617.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001410618.1	PFAM: ribosomal protein L36; KEGG: tpt:Tpet_1316 ribosomal protein L36
YP_001410619.1	TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: tpt:Tpet_1315 translation initiation factor IF-1
YP_001410620.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: tpt:Tpet_1314 methionine aminopeptidase, type I
YP_001410621.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001410622.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001410623.1	PFAM: ribosomal protein L15; KEGG: tpt:Tpet_1311 ribosomal protein L15
YP_001410624.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_001410625.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001410626.1	TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: tpt:Tpet_1308 ribosomal protein L18
YP_001410627.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001410628.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001410629.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_001410630.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001410631.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001410632.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001410633.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001410634.1	one of the stabilizing components for the large ribosomal subunit
YP_001410635.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001410636.1	TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; KEGG: tpt:Tpet_1298 ribosomal protein S3
YP_001410637.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001410638.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001410639.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001410640.1	PFAM: Ribosomal protein L25/L23; KEGG: tpt:Tpet_1294 ribosomal protein L25/L23
YP_001410641.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001410642.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001410643.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001410644.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001410645.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001410646.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001410647.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001410648.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM0767 maltodextrin glycosyltransferase
YP_001410649.1	PFAM: major facilitator superfamily MFS_1; KEGG: tpt:Tpet_1726 major facilitator superfamily MFS_1
YP_001410650.1	KEGG: cno:NT01CX_0696 hypothetical protein
YP_001410651.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pho:PH0597 D-3-phosphoglycerate dehydrogenase
YP_001410652.1	PFAM: peptidase M48 Ste24p; KEGG: dps:DP1308 similar to CAAX prenyl protease
YP_001410653.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: tma:TM1389 ubiquinone/menaquinone biosynthesis methyltransferase-related protein
YP_001410654.1	PFAM: MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; KEGG: tte:TTE0592 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
YP_001410655.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lpn:lpg1500 oxidoreductase, short chain dehydrogenase/reductase
YP_001410656.1	KEGG: tpt:Tpet_1000 hypothetical protein
YP_001410657.1	KEGG: tpt:Tpet_1000 hypothetical protein
YP_001410658.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001410659.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001410660.1	PFAM: ATP-cone domain protein; KEGG: tpt:Tpet_1003 ATP-cone domain protein
YP_001410661.1	PFAM: protein of unknown function DUF199; KEGG: tpt:Tpet_1004 protein of unknown function DUF199
YP_001410662.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: tma:TM1709 conserved hypothetical protein
YP_001410663.1	PFAM: conserved hypothetical protein; KEGG: csc:Csac_1160 uncharacterised P-loop ATPase protein UPF0042
YP_001410664.1	TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: aae:aq_325 glutamate racemase
YP_001410666.1	KEGG: tma:TM1712 hypothetical protein
YP_001410667.1	KEGG: tpt:Tpet_0248 peptidase M50
YP_001410668.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410669.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM0884 methyltransferase, putative
YP_001410670.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001410671.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1547 hypothetical protein
YP_001410672.1	PFAM: extracellular solute-binding protein family 5; KEGG: sth:STH147 oligopeptide ABC transporter substrate-binding protein
YP_001410673.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_2194 putative peptide transport system permease
YP_001410674.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_2195 putative peptide transport permease
YP_001410675.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: pho:PH1959 putative oligopeptide transport system ATP-binding protein
YP_001410676.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: smr:Smar_0342 oligopeptide/dipeptide ABC transporter, ATPase subunit
YP_001410677.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_001410678.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cbo:CBO1438 alcohol dehydrogenase
YP_001410679.1	TIGRFAM: L-lactate dehydrogenase; PFAM: Lactate/malate dehydrogenase; KEGG: tpt:Tpet_0930 L-lactate dehydrogenase
YP_001410680.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0965 alpha amylase, catalytic region
YP_001410681.1	KEGG: tpt:Tpet_0964 hypothetical protein
YP_001410682.1	KEGG: tpt:Tpet_0962 hypothetical protein
YP_001410683.1	KEGG: tpt:Tpet_0961 hypothetical protein
YP_001410684.1	PFAM: glycoside hydrolase family 13 domain protein; KEGG: tpt:Tpet_0960 glycoside hydrolase, family 13 domain protein
YP_001410685.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family
YP_001410686.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001410687.1	PFAM: protein of unknown function UPF0029; KEGG: tma:TM1713 proline dipeptidase, putative
YP_001410688.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_1642 phosphodiesterase, MJ0936 family
YP_001410689.1	PFAM: regulatory protein LacI; sigma-54 DNA-binding domain protein; KEGG: tte:TTE1764 DNA-directed RNA polymerase specialized sigma subunits, sigma54 homologs
YP_001410690.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001410691.1	PFAM: Indigoidine synthase A family protein; KEGG: tte:TTE0327 uncharacterized enzyme involved in pigment biosynthesis
YP_001410692.1	KEGG: tpt:Tpet_1205 hypothetical protein
YP_001410693.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_429 hypothetical protein
YP_001410694.1	PFAM: protein of unknown function DUF340 membrane; KEGG: cbo:CBO1115 membrane protein
YP_001410696.1	PFAM: helix-hairpin-helix motif; Radical SAM domain protein; KEGG: fnu:FN0954 hypothetical cytosolic protein
YP_001410697.1	TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gtn:GTNG_2106 asparaginyl-tRNA synthetase
YP_001410698.1	PFAM: NLP/P60 protein; KEGG: dsy:DSY2087 hypothetical protein
YP_001410700.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410701.1	PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0581 acetyltransferase
YP_001410702.1	PFAM: GTP-binding protein HSR1-related; KEGG: tma:TM0848 hypothetical protein
YP_001410703.1	PFAM: Propanediol utilization protein; KEGG: tpt:Tpet_0542 propanediol utilization protein
YP_001410706.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tpt:Tpet_1579 metal dependent phosphohydrolase
YP_001410707.1	TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; KEGG: tma:TM0262 DNA polymerase III, beta subunit
YP_001410708.1	KEGG: tma:TM1271 type IV pilin-related protein
YP_001410709.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bsu:BG11338 Na+ extrusion transport system ATP-binding protein
YP_001410710.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1661 hypothetical protein
YP_001410711.1	PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: cno:NT01CX_2243 hypothetical protein
YP_001410712.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cpf:CPF_2170 cell envelope-related transcriptional attenuator domain protein
YP_001410713.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001410714.1	PFAM: Aldose 1-epimerase; KEGG: tpt:Tpet_0630 aldose 1-epimerase
YP_001410715.1	KEGG: mmp:MMP1608 hypothetical protein
YP_001410716.1	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE2488 oligoendopeptidase F
YP_001410717.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_001410718.1	PFAM: protein of unknown function UPF0118; KEGG: tpt:Tpet_1434 protein of unknown function UPF0118
YP_001410719.1	PFAM: Asparaginase/glutaminase; KEGG: cbo:CBO2516 L-asparaginase
YP_001410720.1	PFAM: Rhomboid family protein; KEGG: tma:TM1087 hypothetical protein
YP_001410721.1	PFAM: protein of unknown function DUF218; KEGG: tma:TM1674 hypothetical protein
YP_001410722.1	TIGRFAM: flagellar export protein FliJ; KEGG: tma:TM0512 putative flagellar FliJ protein
YP_001410723.1	PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: aba:Acid345_3711 transcriptional regulator, LuxR family
YP_001410724.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: tma:TM1182 chromosome segregation SMC protein, putative
YP_001410725.1	TIGRFAM: UDP-N-acetylmuramate--alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tpt:Tpet_0693 UDP-N-acetylmuramate--alanine ligase
YP_001410726.1	PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: tpt:Tpet_0692 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
YP_001410727.1	PFAM: cell cycle protein; KEGG: tpt:Tpet_0691 cell cycle protein
YP_001410728.1	KEGG: tpt:Tpet_1583 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001410730.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001410731.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001410732.1	PFAM: flavin reductase domain protein FMN-binding; KEGG: ttj:TTHA1858 probable oxidoreductase
YP_001410733.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_001410734.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001410735.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tpt:Tpet_1352 anti-sigma-factor antagonist
YP_001410736.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_001410737.1	these proteins appear to have resulted from a fusion of lytB and rpsA; catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001410738.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001410740.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: tma:TM1682 hypothetical protein
YP_001410741.1	SMART: extracellular solute-binding protein family 3; KEGG: afu:AF1766 amino-acid ABC transporter, periplasmic binding protein/protein kinase
YP_001410742.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001410743.1	PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; UAA transporter; KEGG: tma:TM1017 hypothetical protein
YP_001410744.1	PFAM: extracellular solute-binding protein family 1; KEGG: pho:PH0753 multiple sugar transport system substrate-binding protein
YP_001410745.1	PFAM: Carbohydrate-binding CenC domain protein; KEGG: tpt:Tpet_0899 glycoside hydrolase, family 16
YP_001410746.1	TIGRFAM: heat-inducible transcription repressor HrcA; KEGG: tma:TM0851 heat shock operon repressor HrcA
YP_001410747.1	PFAM: GrpE protein; KEGG: tma:TM0850 grpE protein, putative
YP_001410748.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001410749.1	SMART: Pyrrolo-quinoline quinone; KEGG: mhu:Mhun_0418 PKD
YP_001410750.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: bca:BCE_5573 response regulator LytR
YP_001410751.1	PFAM: histidine kinase internal region; KEGG: vfi:VFA0733 two component sensor histidine kinase
YP_001410752.1	KEGG: tpt:Tpet_0535 anaerobic ribonucleoside-triphosphate reductase activator
YP_001410753.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001410754.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001410755.1	PFAM: peptidase M22 glycoprotease; KEGG: tpt:Tpet_0053 peptidase M22, glycoprotease
YP_001410756.1	TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sth:STH2489 GntP family permease
YP_001410757.1	PFAM: MOFRL domain protein; KEGG: tma:TM1585 glycerate kinase, putative
YP_001410758.1	catalyzes the formation of L-tryptophan from indole and L-serine
YP_001410759.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssu:SSU05_0742 cobalt ABC transporter ATP-binding protein
YP_001410760.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssu:SSU05_0741 cobalt ABC transporter ATP-binding protein
YP_001410761.1	PFAM: cobalt transport protein; KEGG: ssv:SSU98_0739 cobalt ABC transporter permease protein
YP_001410762.1	KEGG: sth:STH2156 hypothetical protein
YP_001410763.1	TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1415 FeS assembly ATPase SufC
YP_001410764.1	TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: tma:TM1369 hypothetical protein
YP_001410765.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410766.1	KEGG: pgi:PG1330 large conductance mechanosensitive channel protein
YP_001410768.1	PFAM: protein of unknown function DUF52; KEGG: tma:TM0087 hypothetical protein
YP_001410769.1	PFAM: type II and III secretion system protein; KEGG: tma:TM0088 comE protein, putative
YP_001410773.1	KEGG: tma:TM0092 hypothetical protein
YP_001410775.1	PFAM: type II secretion system protein; KEGG: tpt:Tpet_0830 type II secretion system protein
YP_001410776.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0222 ABC transporter, ATP-binding protein
YP_001410777.1	PFAM: methyltransferase small; Methyltransferase type 12; KEGG: tma:TM1664 hypothetical protein
YP_001410778.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: cbo:CBO0092 signaling protein
YP_001410779.1	TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: tte:TTE0252 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit
YP_001410780.1	KEGG: mac:MA0777 signal-transducing histidine kinase
YP_001410781.1	KEGG: tdn:Tmden_0219 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001410782.1	PFAM: protein of unknown function DUF1063; KEGG: cbo:CBO2008 membrane protein
YP_001410783.1	PFAM: methylenetetrahydrofolate reductase; KEGG: sru:SRU_2094 5,10-methylenetetrahydrofolate reductase
YP_001410784.1	PFAM: protein of unknown function DUF375; KEGG: sfu:Sfum_2124 protein of unknown function DUF375
YP_001410785.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF39; KEGG: mth:MTH855 inosine-5'-monophosphate dehydrogenase related protein VIII
YP_001410786.1	TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: mka:MK0109 aspartokinase
YP_001410787.1	PFAM: acylphosphatase; KEGG: tpt:Tpet_1228 acylphosphatase
YP_001410788.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001410789.1	PFAM: protein of unknown function DUF82; KEGG: tpt:Tpet_0149 protein of unknown function DUF82
YP_001410791.1	KEGG: tpt:Tpet_0934 hypothetical protein
YP_001410792.1	TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; KEGG: tma:TM1862 hypothetical protein
YP_001410793.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dvl:Dvul_1316 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
YP_001410794.1	TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: tma:TM1860 hypothetical protein
YP_001410795.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001410796.1	KEGG: tpt:Tpet_0939 regulatory protein RecX
YP_001410797.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_001410798.1	TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: tma:TM0086 virulence factor MviN-related protein
YP_001410799.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: tma:TM0224 biotin--(acetyl-CoA carboxylase) synthetase
YP_001410800.1	TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: ftn:FTN_0917 serine-type D-Ala-D-Ala carboxypeptidase
YP_001410801.1	PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: mba:Mbar_A0478 hypothetical protein
YP_001410802.1	KEGG: tte:TTE0272 hypothetical protein
YP_001410803.1	PFAM: Pyrrolo-quinoline quinone; metallophosphoesterase; KEGG: bfs:BF0376 putative PQQ-binding exported phosphoesterase
YP_001410804.1	PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: tma:TM1428 methyl-accepting chemotaxis protein
YP_001410805.1	PFAM: lipolytic protein G-D-S-L family; KEGG: tde:TDE0353 lipase/acylhydrolase, GDSL family
YP_001410806.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001410807.1	PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: bth:BT_0688 cAMP-binding domain (catabolite gene activator) transcriptional regulator
YP_001410808.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE2782 ABC transporter, ATP-binding/permease protein
YP_001410809.1	PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE2781 ABC transporter, ATP-binding/permease protein
YP_001410810.1	PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pho:PH0655 threonine 3-dehydrogenase
YP_001410811.1	TIGRFAM: 8-amino-7-oxononanoate synthase; pyridoxal phosphate-dependent acyltransferase, putative; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: pab:PAB1244 8-amino-7-oxononanoate synthase
YP_001410812.1	PFAM: cyclic nucleotide-binding; KEGG: tpa:TP0262 catabolite gene activator (crp)
YP_001410813.1	TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; KEGG: cbo:CBO3435 isoaspartyl dipeptidase
YP_001410814.1	TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; KEGG: tma:TM0880 oxaloacetate decarboxylase, beta subunit
YP_001410815.1	PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tma:TM0879 ferredoxin
YP_001410816.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tma:TM0878 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit
YP_001410817.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001410819.1	PFAM: cyclic nucleotide-binding
YP_001410820.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pfu:PF1948 lactoylglutathione lyase
YP_001410821.1	PFAM: carboxyl transferase; KEGG: tma:TM0716 propionyl-CoA carboxylase beta chain
YP_001410823.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: tma:TM0717 methylmalonyl-CoA decarboxylase gamma chain
YP_001410824.1	KEGG: tpt:Tpet_1022 hypothetical protein
YP_001410825.1	TIGRFAM: LAO/AO transport system ATPase; PFAM: cobalamin synthesis protein P47K; ArgK protein; KEGG: pfu:PF1947 hypothetical protein
YP_001410826.1	PFAM: cobalamin B12-binding domain protein; KEGG: pab:PAB2187 methylmalonyl-CoA mutase, subunit alpha, C-terminus
YP_001410828.1	PFAM: PHA accumulation regulator DNA-binding protein; KEGG: lbj:LBJ_2512 hypothetical protein
YP_001410829.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: tma:TM0656 hypothetical protein
YP_001410830.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_001410831.1	PFAM: S-adenosylmethionine decarboxylase related; KEGG: tma:TM0655 S-adenosylmethionine decarboxylase
YP_001410832.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: tma:TM0792 hypothetical protein
YP_001410833.1	PFAM: biotin/lipoate A/B protein ligase; KEGG: chy:CHY_0495 biotin/lipoate A/B protein ligase family protein
YP_001410834.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tpt:Tpet_0221 uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase
YP_001410835.1	PFAM: putative RNA methylase; conserved hypothetical protein; KEGG: fnu:FN1329 methyltransferase
YP_001410836.1	PFAM: protein of unknown function DUF47; KEGG: tma:TM0914 hypothetical protein
YP_001410837.1	KEGG: tpt:Tpet_0871 hypothetical protein
YP_001410838.1	KEGG: tpt:Tpet_1169 hypothetical protein
YP_001410839.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001410840.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_001410841.1	KEGG: tma:TM1355 hypothetical protein
YP_001410842.1	PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tpt:Tpet_1055 methenyltetrahydrofolate cyclohydrolase
YP_001410843.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tma:TM0859 preprotein translocase YajC subunit
YP_001410844.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: tma:TM0860 protein-export membrane protein SecD, putative
YP_001410845.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: tma:TM0861 protein-export membrane protein SecF, putative
YP_001410846.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_001410847.1	PFAM: phosphofructokinase; KEGG: mem:Memar_1368 6-phosphofructokinase
YP_001410848.1	PFAM: major facilitator superfamily MFS_1; KEGG: blo:BL0165 possible symporter
YP_001410850.1	PFAM: Heavy metal transport/detoxification protein; KEGG: tma:TM0320 heavy metal binding protein
YP_001410851.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: tpt:Tpet_0600 heavy metal translocating P-type ATPase
YP_001410852.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001410853.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tpt:Tpet_1779 diguanylate cyclase
YP_001410854.1	KEGG: ttj:TTHA0989 GGDEF domain protein
YP_001410855.1	PFAM: PfkB domain protein; KEGG: deb:DehaBAV1_1157 1-phosphofructokinase
YP_001410856.1	PFAM: glycoside hydrolase family 4; KEGG: tma:TM1834 alpha-glucosidase
YP_001410857.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE0670 transposase
YP_001410858.1	PFAM: WD-40 repeat protein; SMART: Pyrrolo-quinoline quinone; KEGG: ddi:DDB_0191333 myosin heavy chain kinase
YP_001410859.1	KEGG: tet:TTHERM_00393070 hypothetical protein Pfam: VAR1 Prefoldin_2 Vicilin_N MAP7 Mod_r M NPV_P10 Apolipoprotein    HSBP1 SNARE
YP_001410860.1	PFAM: RAP domain protein; KEGG: son:SO4019 hypothetical protein
YP_001410861.1	PFAM: protein of unknown function DUF58; KEGG: tma:TM1133 hypothetical protein
YP_001410862.1	KEGG: tpt:Tpet_1611 hypothetical protein
YP_001410863.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM1132 moxR protein, putative
YP_001410864.1	KEGG: csc:Csac_2301 hypothetical protein
YP_001410865.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410866.1	TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: tte:TTE0004 Recombinational DNA repair ATPase
YP_001410867.1	catalyzes the magnesium and ATP-dependent positive supercoiling of DNA; contains helicase and topoisomerase domains
YP_001410868.1	PFAM: extracellular solute-binding protein family 1; KEGG: tpt:Tpet_1408 extracellular solute-binding protein, family 1
YP_001410869.1	PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: gsu:GSU3009 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_001410870.1	PFAM: cobalbumin biosynthesis protein; KEGG: cte:CT0945 cobalamin biosynthesis protein CobP
YP_001410871.1	KEGG: cph:Cpha266_1123 xylose isomerase domain protein TIM barrel
YP_001410872.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: tde:TDE2383 cobalamin 5'-phosphate synthase
YP_001410873.1	PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tko:TK0854 cobyric acid synthase
YP_001410874.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: pfu:PF0296 cobalamin biosynthesis protein
YP_001410875.1	PFAM: aminotransferase class I and II; KEGG: pho:PH0377 putative histidinol-phosphate aminotransferase
YP_001410876.1	TIGRFAM: putative ATP binding protein; PFAM: protein of unknown function DUF71 ATP-binding region; KEGG: afu:AF0720 hypothetical protein
YP_001410877.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001410878.1	PFAM: aldo/keto reductase; KEGG: cac:CAC3378 aldo/keto reductase family enzyme
YP_001410880.1	KEGG: mja:MJ0754 hypothetical protein
YP_001410881.1	PFAM: NUDIX hydrolase; KEGG: cdf:CD0705 putative DNA repair protein
YP_001410882.1	PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: mja:MJ0210 succinyl-CoA synthetase beta chain
YP_001410883.1	PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: mka:MK0732 succinyl-CoA synthetase alpha subunit
YP_001410884.1	PFAM: protein of unknown function DUF161; KEGG: tpt:Tpet_0748 protein of unknown function DUF161
YP_001410885.1	PFAM: Ferritin Dps family protein; KEGG: pfu:PF0742 putative ferritin
YP_001410886.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tpt:Tpet_0148 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_001410887.1	PFAM: DNA photolyase FAD-binding; KEGG: rbe:RBE_0106 deoxyribodipyrimidine photo-lyase
YP_001410888.1	TIGRFAM: CRISPR-associated protein, TM1812 family; CRISPR-associated protein DxTHG motif; KEGG: tpt:Tpet_1098 CRISPR-associated protein DxTHG motif
YP_001410890.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: pth:PTH_1914 hypothetical protein
YP_001410891.1	TIGRFAM: CRISPR-associated protein, Csm1 family; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: csc:Csac_0075 CRISPR-associated protein, Csm1 family
YP_001410892.1	TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: mth:MTH1081 hypothetical protein
YP_001410893.1	TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0077 CRISPR-associated RAMP protein, Csm3 family
YP_001410894.1	TIGRFAM: CRISPR-associated RAMP protein, Csm4 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0078 CRISPR-associated RAMP protein, Csm4 family
YP_001410895.1	TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; PFAM: protein of unknown function DUF324; KEGG: csc:Csac_0079 CRISPR-associated RAMP protein, Csm5 family
YP_001410897.1	TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: cth:Cthe_2303 CRISPR-associated protein Cas6
YP_001410899.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: pto:PTO0048 hypothetical protein
YP_001410900.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: swo:Swol_2515 CRISPR-associated protein Cas2
YP_001410907.1	PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tfu:Tfu_1124 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
YP_001410908.1	KEGG: ehi:388.t00006 hypothetical protein Pfam: PH DUF1090 MAP7 DUF904 DUF1410 UVR PROSITE: GLU_RICH LYS_RICH PH_DOMAIN
YP_001410909.1	PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: csc:Csac_0015 type III restriction enzyme, res subunit
YP_001410910.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_0014 methyltransferase type 11
YP_001410911.1	PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: csc:Csac_1237 transposase, IS605 OrfB
YP_001410912.1	KEGG: sat:SYN_03159 transposase
YP_001410913.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001410914.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tma:TM1773 hypothetical protein
YP_001410915.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: tma:TM1603 permease, putative
YP_001410916.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: tpt:Tpet_1113 riboflavin biosynthesis protein RibD
YP_001410917.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001410918.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate
YP_001410919.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001410920.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: tma:TM0790 phosphomethylpyrimidine kinase
YP_001410921.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tpt:Tpet_0140 xylose isomerase domain protein TIM barrel
YP_001410922.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001410923.1	in Methanocaldococcus jannaschii this enzyme is involved in conversion of 5-phospho-D-ribose-1-pyrophosphate to ribulose-1,5-bisphosphate using NAD as a cofactor; part of RubisCO pathway
YP_001410924.1	PFAM: histidine triad (HIT) protein; KEGG: cac:CAC1287 HIT family hydrolase
YP_001410926.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001410927.1	PFAM: response regulator receiver; KEGG: tma:TM1360 response regulator
YP_001410928.1	TIGRFAM: pullulanase, type I; PFAM: glycoside hydrolase family 13 domain protein; pullanase-associated protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0959 pullulanase, type I
YP_001410929.1	TIGRFAM: phosphate binding protein; KEGG: tpt:Tpet_1507 phosphate binding protein
YP_001410930.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_1508 binding-protein-dependent transport systems inner membrane component
YP_001410931.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_1509 phosphate ABC transporter, inner membrane subunit PstA
YP_001410932.1	TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1510 phosphate ABC transporter, ATPase subunit
YP_001410933.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: tpt:Tpet_1511 phosphate uptake regulator, PhoU
YP_001410934.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tpt:Tpet_1512 two component transcriptional regulator, winged helix family
YP_001410935.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001410936.1	PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: pth:PTH_0201 hypothetical membrane protein
YP_001410937.1	PFAM: sugar transferase; KEGG: csc:Csac_1093 sugar transferase
YP_001410938.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001410939.1	PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: tpt:Tpet_1513 histidine kinase
YP_001410940.1	KEGG: cbo:CBO2817 hypothetical protein
YP_001410941.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001410942.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility domain; KEGG: deh:cbdb_A1667 putative dihydroflavonol 4-reductase
YP_001410943.1	PFAM: regulatory protein MarR; regulatory protein ArsR; transcriptional regulator TrmB; KEGG: tpt:Tpet_0111 transcriptional regulator, MarR family
YP_001410944.1	KEGG: lpl:lp_3418 phosphoenolpyruvate carboxykinase (ATP)
YP_001410945.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: tpe:Tpen_1570 peroxidase
YP_001410946.1	TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; KEGG: gur:Gura_1705 glycogen/starch/alpha-glucan phosphorylase
YP_001410947.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: chy:CHY_0236 hypothetical protein
YP_001410948.1	PFAM: transcriptional regulator PadR family protein; KEGG: mta:Moth_2210 transcriptional regulator, PadR-like family
YP_001410949.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: swo:Swol_1787 glutamate--ammonia ligase
YP_001410950.1	TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: tpt:Tpet_0065 glucose-1-phosphate thymidyltransferase
YP_001410951.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ctc:CTC00366 predicted hydrolase
YP_001410952.1	KEGG: eba:ebA6236 hypothetical protein
YP_001410953.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001410954.1	PFAM: UDP-galactopyranose mutase; KEGG: cac:CAC2169 UDP-galactopyranose mutase
YP_001410955.1	KEGG: lsl:LSL_0694 galactofuranosyltransferase
YP_001410956.1	KEGG: tpt:Tpet_1109 hypothetical protein
YP_001410957.1	PFAM: glycosyl transferase family 2; KEGG: btk:BT9727_5106 beta-1,3-N-acetylglucosaminyltransferase
YP_001410958.1	KEGG: cac:CAC3041 O-actetyl transferase related protein
YP_001410959.1	PFAM: protein of unknown function DUF477; KEGG: tma:TM0962 hypothetical protein
YP_001410960.1	KEGG: tpt:Tpet_1814 hypothetical protein
YP_001410961.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_001410962.1	PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tma:TM0930 hypothetical protein
YP_001410963.1	PFAM: chromosome segregation and condensation protein ScpB; KEGG: tpt:Tpet_0426 putative transcriptional regulator
YP_001410964.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: tma:TM0493 putative segregation and condensation protein A
YP_001410965.1	PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: tpt:Tpet_0035 CBS domain containing protein
YP_001410966.1	KEGG: tma:TM0944 hypothetical protein
YP_001410967.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: tma:TM1687 DNA/pantothenate metabolism flavoprotein
YP_001410968.1	PFAM: Extracellular ligand-binding receptor; KEGG: tpt:Tpet_1610 extracellular ligand-binding receptor
YP_001410969.1	PFAM: Extracellular ligand-binding receptor; KEGG: tpt:Tpet_1610 extracellular ligand-binding receptor
YP_001410970.1	PFAM: inner-membrane translocator; KEGG: tma:TM1136 branched-chain amino acid transport system permease protein
YP_001410971.1	PFAM: inner-membrane translocator; KEGG: tpt:Tpet_1608 inner-membrane translocator
YP_001410972.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1138 branched-chain amino acid transport system ATP-binding protein
YP_001410973.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1139 branched-chain amino acid transport system ATP-binding protein
YP_001410974.1	TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; KEGG: tte:TTE1009 L-serine deaminase
YP_001410975.1	TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: serine dehydratase beta chain; KEGG: cpf:CPF_2959 L-serine dehydratase, iron-sulfur-dependent, beta subunit
YP_001410976.1	PFAM: flagellin domain protein; KEGG: tpt:Tpet_0170 flagellin domain protein
YP_001410977.1	PFAM: glycosyl transferase family 2; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: tma:TM0757 hypothetical protein
YP_001410978.1	PFAM: flagellin domain protein; KEGG: tpt:Tpet_0170 flagellin domain protein
YP_001410979.1	PFAM: flagellin domain protein; KEGG: tpt:Tpet_0170 flagellin domain protein
YP_001410980.1	PFAM: transferase hexapeptide repeat containing protein; KEGG: tma:TM0759 acyltransferase, putative
YP_001410981.1	PFAM: MGS domain protein; KEGG: cno:NT01CX_1696 methylglyoxal synthase
YP_001410982.1	PFAM: protein of unknown function UPF0118; KEGG: tpt:Tpet_1566 protein of unknown function UPF0118
YP_001410983.1	PFAM: glycosyl transferase group 1; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: tpt:Tpet_0172 glycosyl transferase, family 2
YP_001410984.1	TIGRFAM: redox-active disulfide protein 2; KEGG: pth:PTH_0650 hypothetical protein
YP_001410985.1	PFAM: permease; KEGG: pth:PTH_0648 predicted permease
YP_001410986.1	PFAM: regulatory protein ArsR; KEGG: dde:Dde_2776 putative transcriptional regulator, ArsR family
YP_001410987.1	KEGG: tma:TM1652 hypothetical protein
YP_001410988.1	TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; KEGG: tma:TM1653 pyrimidine-nucleoside phosphorylase
YP_001410989.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: tma:TM1654 sensor histidine kinase HpkA
YP_001410990.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tpt:Tpet_1136 two component transcriptional regulator, winged helix family
YP_001410991.1	KEGG: tpt:Tpet_0287 hypothetical protein
YP_001410992.1	KEGG: tpt:Tpet_0262 hypothetical protein
YP_001410993.1	PFAM: Hsp33 protein; KEGG: tma:TM1394 chaperonin (heat shock protein 33)
YP_001410994.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tpt:Tpet_1244 polysaccharide biosynthesis protein CapD
YP_001410995.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001410996.1	PFAM: GGDEF domain containing protein; KEGG: tpt:Tpet_0817 putative diguanylate cyclase
YP_001410998.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: tpt:Tpet_0330 cell shape determining protein, MreB/Mrl family
YP_001410999.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001411000.1	PFAM: phosphatidate cytidylyltransferase; KEGG: tpt:Tpet_1386 phosphatidate cytidylyltransferase
YP_001411001.1	TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: chy:CHY_1781 undecaprenyl diphosphate synthase
YP_001411002.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001411003.1	PFAM: MECDP-synthase; KEGG: tma:TM0647 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_001411004.1	KEGG: tma:TM0241 hypothetical protein
YP_001411005.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_001411006.1	TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase; KEGG: tma:TM0239 glucose-1-phosphate adenylyltransferase
YP_001411007.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001411008.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001411009.1	PFAM: protein of unknown function UPF0102; KEGG: tpt:Tpet_0671 protein of unknown function UPF0102
YP_001411010.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: tpt:Tpet_0672 glutamyl-tRNA(Gln) amidotransferase, C subunit
YP_001411011.1	PFAM: carbon storage regulator; KEGG: dps:DP2691 probable carbon storage regulator (CsrA)
YP_001411012.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_001411013.1	PFAM: alpha/beta hydrolase fold; KEGG: pfu:PF0480 lysophospholipase
YP_001411014.1	PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: tma:TM1356 hypothetical protein
YP_001411015.1	PFAM: Dak phosphatase; KEGG: tpt:Tpet_1060 Dak phosphatase
YP_001411016.1	PFAM: protein of unknown function DUF322; KEGG: tpt:Tpet_1059 protein of unknown function DUF322
YP_001411017.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001411018.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001411019.1	TIGRFAM: putative translation initiation factor, aIF-2BI family; eIF-2B alpha/beta/delta-related uncharacterized protein; PFAM: initiation factor 2B related; KEGG: tpt:Tpet_0016 putative translation initiation factor, aIF-2BI family
YP_001411020.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: tpt:Tpet_1694 TrkA-N domain protein
YP_001411021.1	KEGG: tpt:Tpet_0015 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_001411022.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001411023.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: tpt:Tpet_1588 response regulator receiver protein
YP_001411025.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001411026.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: tpt:Tpet_0766 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
YP_001411027.1	TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bcz:BCZK3352 imidazolonepropionase
YP_001411028.1	PFAM: protein of unknown function DUF1312; KEGG: tpt:Tpet_1238 protein of unknown function DUF1312
YP_001411029.1	PFAM: Heptaprenyl diphosphate synthase component I; KEGG: tpt:Tpet_1237 heptaprenyl diphosphate synthase component I
YP_001411030.1	PFAM: glycoside hydrolase family 1; KEGG: tte:TTE0358 beta-glucosidase
YP_001411031.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: tpt:Tpet_0251 CheC, inhibitor of MCP methylation
YP_001411032.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: tma:TM0679 flagellar motor switch protein FliM
YP_001411033.1	PFAM: flagellar basal body-associated protein FliL; KEGG: tpt:Tpet_0253 flagellar basal body-associated protein FliL
YP_001411034.1	KEGG: tma:TM0677 motility protein B
YP_001411035.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: tpt:Tpet_0255 MotA/TolQ/ExbB proton channel
YP_001411036.1	PFAM: flagellar FlbD family protein; KEGG: tma:TM0675 flagellar protein, putative
YP_001411037.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: tpt:Tpet_0257 protein of unknown function DUF1078 domain protein
YP_001411038.1	PFAM: flagellar hook capping protein; KEGG: tma:TM0673 basal-body rod modification protein FlgD
YP_001411039.1	PFAM: flagellar hook-length control protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C Rho_Binding ERM Prefoldin_2 WXG100 Vicilin_N TBPIP    Myosin_tail_1 Filament YscO Bacillus_HBL HAP1_N EzrA DUF948    Rab5-bind Laminin_I MpPF2 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH
YP_001411040.1	KEGG: tma:TM0671 M-related protein
YP_001411041.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: tma:TM1651 elongation factor EF-G
YP_001411042.1	PFAM: dihydrofolate reductase region; KEGG: tpt:Tpet_1150 dihydrofolate reductase-like protein
YP_001411043.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001411044.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001411045.1	KEGG: tet:TTHERM_00393070 hypothetical protein Pfam: VAR1 Prefoldin_2 Vicilin_N MAP7 Mod_r M NPV_P10 Apolipoprotein    HSBP1 SNARE
YP_001411046.1	KEGG: mmp:MMP0275 hypothetical protein
YP_001411047.1	KEGG: mba:Mbar_A3737 hypothetical protein
YP_001411049.1	PFAM: major facilitator superfamily MFS_1; KEGG: she:Shewmr4_0065 major facilitator superfamily MFS_1
YP_001411050.1	PFAM: phosphofructokinase; KEGG: hch:HCH_05798 6-phosphofructokinase
YP_001411051.1	PFAM: flagellin domain protein; KEGG: tpt:Tpet_0793 flagellin domain protein
YP_001411052.1	PFAM: Fibronectin type III domain protein; KEGG: mhu:Mhun_0418 PKD
YP_001411053.1	PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0350 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components
YP_001411054.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0351 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
YP_001411055.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0352 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
YP_001411056.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tte:TTE0353 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
YP_001411057.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tpt:Tpet_1549 oligopeptide/dipeptide ABC transporter, ATPase subunit
YP_001411058.1	PFAM: glycoside hydrolase family 1; KEGG: pfu:PF0073 beta-glucosidase
YP_001411059.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tpt:Tpet_1550 periplasmic binding protein/LacI transcriptional regulator
YP_001411060.1	PFAM: glycoside hydrolase family 5; KEGG: tma:TM1751 endoglucanase
YP_001411061.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tma:TM0533 putative oligopeptide transport system permease protein
YP_001411062.1	PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: tva:TVAG_243650 Transposase family protein
YP_001411063.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tpt:Tpet_0389 binding-protein-dependent transport systems inner membrane component
YP_001411064.1	PFAM: extracellular solute-binding protein family 5; KEGG: tma:TM0531 putative oligopeptide transport system substrate-binding protein
YP_001411065.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0530 putative oligopeptide transport system ATP-binding protein
YP_001411066.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: tma:TM0498 putative oligopeptide transport system ATP-binding protein
YP_001411069.1	PFAM: Exonuclease VII large subunit; KEGG: pgi:PG1128 exodeoxyribonuclease VII, large subunit
YP_001411070.1	PFAM: glycoside hydrolase family 31; KEGG: tte:TTE0006 Alpha-glucosidases, family 31 of glycosyl hydrolases
YP_001411071.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_001411072.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tpt:Tpet_0674 DNA protecting protein DprA
YP_001411073.1	PFAM: Fe-S cluster domain protein; KEGG: tpt:Tpet_0675 Fe-S cluster domain protein
YP_001411074.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001411075.1	KEGG: tma:TM1408 hypothetical protein
YP_001411076.1	KEGG: tma:TM1407 hypothetical protein
YP_001411077.1	KEGG: tma:TM1406 hypothetical protein
YP_001411078.1	PFAM: methylenetetrahydrofolate reductase; KEGG: tpt:Tpet_0654 methylenetetrahydrofolate reductase
YP_001411079.1	TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tpt:Tpet_0747 primosomal protein N'
YP_001411080.1	PFAM: sodium:neurotransmitter symporter; KEGG: tko:TK1432 sodium-dependent transporter, SNF family
YP_001411081.1	KEGG: cpr:CPR_0802 ISCpe7, transposase
YP_001411082.1	PFAM: Spore coat protein CotH; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I
YP_001411084.1	PFAM: ABC-2 type transporter; KEGG: tma:TM1100 putative ABC-2 type transport system permease protein
YP_001411086.1	TIGRFAM: molybdenum cofactor synthesis domain; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: tma:TM0703 competence-damage inducible protein, putative
YP_001411087.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tth:TTC0455 transcriptional repressor
YP_001411088.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001411089.1	KEGG: wbr:WGLp105 Zn-dependent protease with chaperone function
YP_001411090.1	KEGG: tko:TK2099 predicted membrane-bound metal-dependent hydrolase
YP_001411092.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ctc:CTC00276 iron(III)-transport ATP-binding protein sfuC
YP_001411093.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1786 transposase
YP_001411094.1	KEGG: csc:Csac_2416 hypothetical protein
YP_001411095.1	KEGG: csc:Csac_2415 hypothetical protein
YP_001411096.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2414 binding-protein-dependent transport systems inner membrane component
YP_001411097.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2413 binding-protein-dependent transport systems inner membrane component
YP_001411098.1	PFAM: glycoside hydrolase family 3 domain protein; KEGG: tma:TM0025 beta-glucosidase
YP_001411099.1	PFAM: glycoside hydrolase family 16; KEGG: tma:TM0024 laminarinase
YP_001411100.1	PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tma:TM1218 transcriptional regulator, LacI family
YP_001411101.1	PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_1477 ABC-2 type transporter
YP_001411102.1	PFAM: ABC-2 type transporter; KEGG: tpt:Tpet_1478 ABC-2 type transporter
YP_001411103.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tpt:Tpet_1479 ABC transporter related
YP_001411104.1	PFAM: Radical SAM domain protein; KEGG: tpt:Tpet_1480 radical SAM domain protein
YP_001411106.1	TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tpt:Tpet_1151 glutamate synthase (NADPH), homotetrameric
YP_001411107.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: tma:TM1639 electron transfer protein, putative
YP_001411108.1	PFAM: Recombinase; KEGG: bca:BCE_0418 hypothetical protein
YP_001411109.1	PFAM: Resolvase domain; Recombinase; KEGG: cth:Cthe_1671 recombinase
YP_001411110.1	PFAM: regulatory protein ArsR; KEGG: csc:Csac_0476 regulatory protein, ArsR
YP_001411111.1	PFAM: Heavy metal transport/detoxification protein; KEGG: csc:Csac_0477 heavy metal translocating P-type ATPase
YP_001411112.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1786 transposase
YP_001411113.1	PFAM: glycoside hydrolase family 13 domain protein; KEGG: tma:TM1844 hypothetical protein
YP_001411114.1	PFAM: transposase IS3/IS911 family protein
YP_001411115.1	PFAM: Integrase catalytic region; KEGG: pth:PTH_1572 transposase and inactivated derivatives
YP_001411116.1	PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family
YP_001411117.1	KEGG: cpr:CPR_0947 ISCpe7, transposase
YP_001411119.1	PFAM: Abortive infection protein; KEGG: cpr:CPR_0234 CAAX amino terminal protease family protein
YP_001411120.1	KEGG: csc:Csac_2704 hypothetical protein
YP_001411121.1	KEGG: ddi:DDBDRAFT_0204284 hypothetical protein
YP_001411126.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sfu:Sfum_1355 CRISPR-associated protein Cas1
YP_001411127.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE0670 transposase
YP_001411128.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: tte:TTE1786 transposase
YP_001411129.1	KEGG: pde:Pden_4650 binding-protein-dependent transport systems inner membrane component
YP_001411130.1	KEGG: sth:STH3219 iron ABC transporter substrate-binding protein
YP_001411131.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_0386 mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
YP_001411132.1	SMART: transglutaminase domain protein; KEGG: tte:TTE0036 transglutaminase-like enzyme, putative cysteine protease
YP_001411133.1	TIGRFAM: putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: drm:Dred_1731 putative delta-1-pyrroline-5-carboxylate dehydrogenase
YP_001411134.1	PFAM: cobalamin B12-binding domain protein; D-Lysine 56-aminomutase alpha subunit; KEGG: tte:TTE1238 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)
YP_001411135.1	KEGG: tte:TTE1237 hypothetical protein
YP_001411136.1	PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: tte:TTE1236 threonine synthase
YP_001411137.1	KEGG: tte:TTE1235 hypothetical protein
YP_001411138.1	PFAM: dihydrodipicolinate reductase; KEGG: tte:TTE1234 hypothetical protein
YP_001411139.1	KEGG: sha:SH2426 hypothetical protein
YP_001411140.1	TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: tpt:Tpet_1648 adenylosuccinate lyase
YP_001411141.1	PFAM: methyltransferase small; Methyltransferase type 11; KEGG: tpt:Tpet_0239 methyltransferase type 11
YP_001411142.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: tma:TM0082 flagellar hook-associated protein 3
YP_001411143.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_0841 flagellar hook-associated protein FlgK
YP_001411145.1	KEGG: tma:TM0085 negative regulator of flagellin synthesis FlgM
YP_001411146.1	PFAM: protein of unknown function DUF163; KEGG: cth:Cthe_2326 protein of unknown function DUF163
YP_001411147.1	PFAM: protein of unknown function DUF88; KEGG: bam:Bamb_1072 protein of unknown function DUF88
YP_001411148.1	PFAM: protein of unknown function DUF501; KEGG: tpt:Tpet_1666 protein of unknown function DUF501
YP_001411149.1	PFAM: protein of unknown function Met10; methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tma:TM1079 ribosomal protein L11 methyltransferase, putative
YP_001411150.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: tpt:Tpet_0511 peptidase M23B
YP_001411151.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001411152.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tpt:Tpet_0589 amidohydrolase 3
YP_001411153.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001411154.1	PFAM: peptidase S16 lon domain protein; KEGG: tpt:Tpet_0928 peptidase S16, lon domain protein
YP_001411155.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; KEGG: tma:TM1383 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
YP_001411156.1	PFAM: NUDIX hydrolase; KEGG: tma:TM1382 hypothetical protein
YP_001411157.1	KEGG: tte:TTE1239 methylaspartate mutase
YP_001411158.1	KEGG: tte:TTE0290 Periplasmic sugar-binding proteins
YP_001411159.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter (ATP-binding protein)
YP_001411160.1	PFAM: inner-membrane translocator; KEGG: tte:TTE0292 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components
YP_001411161.1	PFAM: ROK family protein; KEGG: tma:TM0110 transcriptional regulator, XylR-related
YP_001411162.1	PFAM: LemA family protein; KEGG: tma:TM0961 lemA protein
YP_001411163.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001411164.1	TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: tma:TM1250 phosphoribosylamine--glycine ligase
YP_001411165.1	PFAM: AICARFT/IMPCHase bienzyme formylation region; KEGG: tpt:Tpet_1522 IMP cyclohydrolase
YP_001411166.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: tpt:Tpet_1523 phosphoribosylglycinamide formyltransferase
YP_001411167.1	TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: tpt:Tpet_1524 amidophosphoribosyltransferase
YP_001411168.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: tpt:Tpet_0984 DNA-directed RNA polymerase, omega subunit
YP_001411169.1	PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; KEGG: tpt:Tpet_0985 guanylate kinase
YP_001411170.1	PFAM: protein of unknown function DUF370; KEGG: tpt:Tpet_0986 protein of unknown function DUF370
YP_001411171.1	PFAM: YicC domain protein; KEGG: tma:TM1691 hypothetical protein
YP_001411172.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001411173.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: tma:TM0820 NADH-dependent butanol dehydrogenase
YP_001411174.1	KEGG: tpt:Tpet_1797 PhoPQ-activated pathogenicity-related protein-like protein
YP_001411175.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tpt:Tpet_0953 alpha amylase, catalytic region
YP_001411176.1	PFAM: response regulator receiver; KEGG: gsu:GSU1495 sigma-54 dependent DNA-binding response regulator
YP_001411177.1	PFAM: TrkA-N domain protein; KEGG: tpt:Tpet_1656 TrkA-N domain protein
YP_001411178.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: tpt:Tpet_1655 TrkA-N domain protein
YP_001411179.1	PFAM: cation transporter; KEGG: tma:TM1089 TRK system potassium uptake protein TrkH
YP_001411180.1	KEGG: tma:TM0491 hypothetical protein
YP_001411181.1	KEGG: tpt:Tpet_0431 hypothetical protein
YP_001411182.1	PFAM: AMMECR1 domain protein; KEGG: tpt:Tpet_1241 AMMECR1 domain protein
YP_001411183.1	KEGG: tpe:Tpen_1599 major facilitator superfamily MFS_1
YP_001411184.1	PFAM: tRNA methyltransferase complex GCD14 subunit; KEGG: tpt:Tpet_0181 tRNA methyltransferase complex GCD14 subunit
YP_001411185.1	TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: tpt:Tpet_0182 carboxyl-terminal protease
YP_001411187.1	KEGG: lic:LIC12342 export protein
YP_001411188.1	PFAM: glycosyl transferase group 1; KEGG: tma:TM0744 hypothetical protein
YP_001411189.1	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: tpt:Tpet_1013 ribosome small subunit-dependent GTPase A
YP_001411190.1	PFAM: PASTA domain containing protein; KEGG: chy:CHY_1478 putative serine/threonine protein kinase
YP_001411191.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_001411192.1	PFAM: Radical SAM domain protein; KEGG: tpt:Tpet_0920 radical SAM domain protein
YP_001411193.1	PFAM: Radical SAM domain protein; KEGG: tma:TM0109 pyruvate formate lyase activating enzyme
YP_001411194.1	PFAM: peptidase M20; peptidase M42 family protein; KEGG: tpt:Tpet_1701 peptidase M42 family protein
YP_001411196.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: tpt:Tpet_1699 competence protein ComEA helix-hairpin-helix repeat protein
YP_001411197.1	PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: aha:AHA_1572 HD domain protein
YP_001411198.1	PFAM: ATP-binding region ATPase domain protein; KEGG: mag:amb1111 signal transduction histidine kinase
YP_001411199.1	SMART: extracellular solute-binding protein family 3; KEGG: pen:PSEEN5040 periplasmic binding protein
YP_001411200.1	KEGG: tpt:Tpet_1724 integral membrane protein-like protein
YP_001411201.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tma:TM0727 PmbA-related protein
YP_001411202.1	PFAM: peptidase U62 modulator of DNA gyrase; KEGG: tma:TM0726 TldD protein
YP_001411203.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: tte:TTE1358 DNA mismatch repair enzyme (predicted ATPase)
YP_001411205.1	KEGG: tva:TVAG_189140 hypothetical protein
YP_001411206.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: tpt:Tpet_1419 flagellar basal-body rod protein FlgB
YP_001411207.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tma:TM1365 flagellar basal-body rod protein FlgC
YP_001411208.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: tma:TM1366 flagellar hook-basal body complex protein FliE
YP_001411209.1	KEGG: tpt:Tpet_0443 S-layer domain protein
YP_001411210.1	PFAM: ribosomal protein S15; KEGG: tpt:Tpet_1439 ribosomal protein S15
YP_001411211.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001411212.1	TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; KEGG: tpt:Tpet_0343 crossover junction endodeoxyribonuclease RuvC
YP_001411213.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_001411214.1	TIGRFAM: preprotein translocase, SecG subunit; KEGG: tpt:Tpet_0441 preprotein translocase, SecG subunit
YP_001411215.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001411216.1	PFAM: S-layer domain protein; KEGG: tma:TM0477 outer membrane protein alpha
YP_001411217.1	KEGG: tpt:Tpet_0444 hypothetical protein
YP_001411218.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001411219.1	PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: tma:TM0364 4-alpha-glucanotransferase
YP_001411220.1	TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: tpt:Tpet_0690 UDP-N-acetylmuramoylalanine--D-glutamate ligase
YP_001411221.1	PFAM: extracellular solute-binding protein family 5; KEGG: tpt:Tpet_0460 4-phytase
YP_001411222.1	KEGG: csc:Csac_1948 CopG domain protein DNA-binding domain protein
YP_001411223.1	PFAM: PilT protein domain protein; KEGG: csc:Csac_1947 PilT protein domain protein
YP_001411224.1	PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: tpt:Tpet_0923 putative cold-shock DNA-binding domain protein
YP_001411225.1	PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: tma:TM0382 endonuclease III
YP_001411226.1	PFAM: Rubrerythrin; KEGG: csc:Csac_1137 rubrerythrin
YP_001411227.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001411228.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001411229.1	PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: tma:TM1215 NADH dehydrogenase I chain C
YP_001411230.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001411231.1	PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: tma:TM1213 NADH dehydrogenase I chain H
YP_001411232.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tma:TM1212 NADH dehydrogenase I chain M
YP_001411233.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: tma:TM1211 putative NADH dehydrogenase I chain N
YP_001411234.1	PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: tma:TM1210 putative multicomponent Na+:H+ antiporter subunit C
YP_001411235.1	subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001411236.1	KEGG: tma:TM1208 putative multicomponent Na+:H+ antiporter subunit B
YP_001411237.1	subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_001411238.1	PFAM: multiple resistance and pH regulation protein F; KEGG: tma:TM1206 putative multicomponent Na+:H+ antiporter subunit F
YP_001411239.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001411240.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_001411241.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_001411242.1	TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit
YP_001411243.1	KEGG: tpt:Tpet_0237 hypothetical protein
YP_001411244.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; holo-acyl-carrier-protein synthase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 4'-phosphopantetheinyl transferase; KEGG: cbo:CBO0830 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
YP_001411245.1	catalyzes the formation of pyruvate from oxaloacetate
YP_001411247.1	PFAM: protein of unknown function DUF795; KEGG: tma:TM1513 hypothetical protein
YP_001411248.1	PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: tpt:Tpet_1344 transcription-repair coupling factor
YP_001411250.1	KEGG: mgm:Mmc1_3034 flagellar biosynthetic protein (FlhB)-like protein
YP_001411251.1	KEGG: tma:TM0725 hypothetical protein
YP_001411252.1	recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1
YP_001411253.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: tpt:Tpet_0927 septum site-determining protein MinD
YP_001411254.1	KEGG: tpt:Tpet_0926 hypothetical protein
YP_001411257.1	KEGG: tpt:Tpet_0397 hypothetical protein
YP_001411258.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; KEGG: tma:TM0570 cell division protein FtsY
YP_001411259.1	KEGG: tpt:Tpet_0349 uncharacterized protein-like protein
YP_001411260.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; 3D domain protein; KEGG: tpt:Tpet_0350 peptidase M23B
YP_001411261.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: vei:Veis_2372 transcriptional regulator, BadM/Rrf2 family
YP_001411262.1	PFAM: ExsB family protein; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: tpt:Tpet_0401 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
YP_001411263.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: tpt:Tpet_0718 hypoxanthine phosphoribosyltransferase
YP_001411264.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tpt:Tpet_0931 cell envelope-related transcriptional attenuator
YP_001411267.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tpt:Tpet_0109 glycosyl transferase, WecB/TagA/CpsF family
YP_001411268.1	TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: tpt:Tpet_0223 methyltransferase GidB
YP_001411269.1	PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: tpt:Tpet_0333 oxidoreductase domain protein
YP_001411270.1	PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cbo:CBO0827 6-pyruvoyl tetrahydrobiopterin synthase
YP_001411271.1	TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; KEGG: tpt:Tpet_0461 DNA-directed RNA polymerase, beta' subunit
YP_001411272.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001411273.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001411274.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001411275.1	PFAM: penicillin-binding protein transpeptidase; KEGG: tpt:Tpet_0057 peptidoglycan glycosyltransferase
YP_001411277.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: tma:TM0872 S-adenosyl-methyltransferase
YP_001411278.1	this enzyme from Pyrococcus has carbamoyl phosphate synthetase activity even though the enzyme shows sequence and structural similarity to carbamate kinase; this enzyme using carbate and ATP to synthesize carbamoyl phosphate which may be a favorable reaction at the extreme temperatures these organisms live under
YP_001411279.1	PFAM: phosphate acetyl/butaryl transferase; KEGG: tte:TTE2204 phosphotransacetylase
YP_001411280.1	PFAM: peptidase M55 D-aminopeptidase; KEGG: efa:EF2723 putative peptide transport protein