-- dump date 20110802_184350 -- class Genbank::misc_RNA -- table misc_rna -- table main -- field 1 id -- field 2 GeneID -- field 3 chrom_position -- field 4 chromosome -- field 5 contig -- field 6 end_pos -- field 7 gene -- field 8 gene_id -- field 9 name -- field 10 organism -- field 11 product -- field 12 start_pos -- field 13 strand -- field 14 taxid -- field 15 type -- header -- id GeneID chrom_position chromosome contig end_pos gene gene_id name organism product start_pos strand taxid type b4413 2847745 16952..17006 NC_000913.2 17006 sokC 2847745 sokC Escherichia coli K12 Antisense sRNA blocking mokC, and hence hokC, translation; IS186A interrupts hokC transcript downstream of hokC gene in K-12 16952 D 83333 misc_RNA b4577 4056038 77367..77593 NC_000913.2 77593 sgrS 4056038 sgrS Escherichia coli K12 sRNA that destabilzes ptsG mRNA; regulated by sgrR 77367 D 83333 misc_RNA b4414 2847773 189712..189847 NC_000913.2 189847 tff 2847773 tff Escherichia coli K12 Novel sRNA, function unknown 189712 D 83333 misc_RNA b0455 944909 475672..475785 NC_000913.2 475785 ffs 944909 ffs Escherichia coli K12 4.5S sRNA component of Signal Recognition Particle (SRP); works with the Ffh protein; involved in co-translational protein translocation into and possibly through membranes 475672 D 83333 misc_RNA b4585 5061500 506428..506509 NC_000913.2 506509 sroB 5061500 sroB Escherichia coli K12 Novel sRNA, function unknown 506428 D 83333 misc_RNA b4416 2847681 complement(852175..852263) NC_000913.2 852263 rybA 2847681 rybA Escherichia coli K12 Novel sRNA, function unknown 852175 R 83333 misc_RNA b4417 2847774 complement(887199..887277) NC_000913.2 887277 rybB 2847774 rybB Escherichia coli K12 sRNA effector of ompC and ompW mRNA instability; requires Hfq 887199 R 83333 misc_RNA b4418 2847755 1145812..1145980 NC_000913.2 1145980 psrD 2847755 psrD Escherichia coli K12 Novel sRNA, function unknown 1145812 D 83333 misc_RNA b4420 2847734 1268546..1268612 NC_000913.2 1268612 rdlA 2847734 rdlA Escherichia coli K12 Antisense sRNA RdlA affects LdrA translation; proposed addiction module in LDR-A repeat, with toxic peptide LdrA 1268546 D 83333 misc_RNA b4422 2847770 1269081..1269146 NC_000913.2 1269146 rdlB 2847770 rdlB Escherichia coli K12 Antisense sRNA RdlB affects LdrB translation; proposed addiction module in LDR-B repeat, with toxic peptide LdrB 1269081 D 83333 misc_RNA b4424 2847680 1269616..1269683 NC_000913.2 1269683 rdlC 2847680 rdlC Escherichia coli K12 Antisense sRNA RdlC affects LdrC translation; proposed addiction module in LDR-C repeat, with toxic peptide LdrC 1269616 D 83333 misc_RNA b4425 2847683 complement(1286289..1286459) NC_000913.2 1286459 rttR 2847683 rttR Escherichia coli K12 rtT sRNA, processed from tyrT transcript; encodes putative Tpr protein; RNA itself may modulate the stringent response 1286289 R 83333 misc_RNA b4426 2847751 complement(1403676..1403833) NC_000913.2 1403833 isrA 2847751 isrA Escherichia coli K12 Novel sRNA, function unknown 1403676 R 83333 misc_RNA b4427 2847713 1435145..1435253 NC_000913.2 1435253 micC 2847713 micC Escherichia coli K12 MicC sRNA regulator of OmpC translation 1435145 D 83333 misc_RNA b4597 5061508 complement(1489467..1489530) NC_000913.2 1489530 rydC 5061508 rydC Escherichia coli K12 sRNA regulator of yejABEF 1489467 R 83333 misc_RNA b4429 2847728 1490143..1490198 NC_000913.2 1490198 sokB 2847728 sokB Escherichia coli K12 Antisense sRNA blocking mokB, and hence hokB, translation 1490143 D 83333 misc_RNA b1574 946140 1647406..1647458 NC_000913.2 1647458 dicF 946140 dicF Escherichia coli K12 DicF antisense sRNA, inhibits ftsZ, Qin prophage 1647406 D 83333 misc_RNA b4430 2847670 complement(1762737..1762804) NC_000913.2 1762804 rydB 2847670 rydB Escherichia coli K12 Novel sRNA, function unknown 1762737 R 83333 misc_RNA b4431 2847671 1768396..1768501 NC_000913.2 1768501 rprA 2847671 rprA Escherichia coli K12 Positive regulatory sRNA for RpoS translation; non-essential gene 1768396 D 83333 misc_RNA b4432 2847771 1921090..1921338 NC_000913.2 1921338 ryeA 2847771 ryeA Escherichia coli K12 Novel sRNA, function unknown 1921090 D 83333 misc_RNA b4433 2847772 complement(1921188..1921308) NC_000913.2 1921308 ryeB 2847772 ryeB Escherichia coli K12 Novel sRNA, function unknown 1921188 R 83333 misc_RNA b4434 2847689 complement(1985863..1986022) NC_000913.2 1986022 isrB 2847689 isrB Escherichia coli K12 Novel sRNA, function unknown 1985863 R 83333 misc_RNA b1954 946470 complement(2023251..2023337) NC_000913.2 2023337 dsrA 946470 dsrA Escherichia coli K12 Regulatory sRNA enhances translation of RpoS; component of acid resistance regulatory circuit; also antagonist of H-NS function by decreasing H-NS levels 2023251 R 83333 misc_RNA b4603 5061507 2031673..2031763 NC_000913.2 2031763 rseX 5061507 rseX Escherichia coli K12 sRNA regulating ompA and ompC translation, with Hfq 2031673 D 83333 misc_RNA b4435 2847691 2069339..2069542 NC_000913.2 2069542 isrC 2847691 isrC Escherichia coli K12 Novel sRNA, function unknown, CP4-44; putative prophage remnant 2069339 D 83333 misc_RNA b4436 2847673 2151333..2151475 NC_000913.2 2151475 ryeC 2847673 ryeC Escherichia coli K12 Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown 2151333 D 83333 misc_RNA b4437 2847674 2151668..2151803 NC_000913.2 2151803 ryeD 2847674 ryeD Escherichia coli K12 Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes 2151668 D 83333 misc_RNA b4438 2847769 2165136..2165221 NC_000913.2 2165221 ryeE 2847769 ryeE Escherichia coli K12 Novel sRNA, function unknown 2165136 D 83333 misc_RNA b4439 2847742 2311106..2311198 NC_000913.2 2311198 micF 2847742 micF Escherichia coli K12 Regulatory antisense sRNA affecting ompF expression; member of soxRS regulon 2311106 D 83333 misc_RNA b4440 2847714 2651877..2652180 NC_000913.2 2652180 ryfA 2847714 ryfA Escherichia coli K12 Novel sRNA, function unknown 2651877 D 83333 misc_RNA b4441 2847700 complement(2689182..2689362) NC_000913.2 2689362 sroF 2847700 sroF Escherichia coli K12 Novel sRNA, function unknown 2689182 R 83333 misc_RNA b4607 5061517 complement(2698081..2698399) NC_000913.2 2698399 ryfB 5061517 ryfB Escherichia coli K12 Novel sRNA, function unknown 2698081 R 83333 misc_RNA b4608 5061518 2698542..2698618 NC_000913.2 2698618 ryfC 5061518 ryfC Escherichia coli K12 Novel sRNA, function unknown 2698542 D 83333 misc_RNA b4609 5061506 complement(2732175..2732317) NC_000913.2 2732317 ryfD 5061506 ryfD Escherichia coli K12 Novel sRNA, function unknown 2732175 R 83333 misc_RNA b2621 945053 2753615..2753977 NC_000913.2 2753977 ssrA 945053 ssrA Escherichia coli K12 tmRNA, 10Sa RNA 2753615 D 83333 misc_RNA b4645 5625571 2775994..2776007 NC_000913.2 2776007 psaA 5625571 psaA Escherichia coli K12 2775994 D 83333 misc_RNA b4442 2847697 2812824..2812901 NC_000913.2 2812901 micA 2847697 micA Escherichia coli K12 sRNA effector of ompA mRNA instability in stationary phase; requires Hfq 2812824 D 83333 misc_RNA b4408 2847719 complement(2922178..2922537) NC_000913.2 2922537 csrB 2847719 csrB Escherichia coli K12 CsrA-binding sRNA, antagonizing CsrA regulation; blocks the CsrA binding of glgC mRNA 2922178 R 83333 misc_RNA b4443 2847720 2940718..2940923 NC_000913.2 2940923 gcvB 2847720 gcvB Escherichia coli K12 GcvB sRNA gene divergent from gcvA 2940718 D 83333 misc_RNA b4444 2847746 complement(2974124..2974211) NC_000913.2 2974211 omrA 2847746 omrA Escherichia coli K12 sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq 2974124 R 83333 misc_RNA b4445 2847747 complement(2974332..2974407) NC_000913.2 2974407 omrB 2847747 omrB Escherichia coli K12 sRNA down regulates OM proteins; positively regulated by OmpR/EnvZ; binds Hfq 2974332 R 83333 misc_RNA b2911 947405 3054005..3054187 NC_000913.2 3054187 ssrS 947405 ssrS Escherichia coli K12 6S sRNA inhibits RNA polymerase promoter binding; template for RNA-directed pRNA synthesis by RNAP; mimics an open promoter 3054005 D 83333 misc_RNA b4446 2847749 3054871..3055010 NC_000913.2 3055010 rygC 2847749 rygC Escherichia coli K12 Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes 3054871 D 83333 misc_RNA b4447 2847684 complement(3192745..3192887) NC_000913.2 3192887 rygD 2847684 rygD Escherichia coli K12 Putative sRNA, function unknown; paralogous to the other QUAD sRNA genes 3192745 R 83333 misc_RNA b4611 5061520 complement(3193121..3193262) NC_000913.2 3193262 rygE 5061520 rygE Escherichia coli K12 Putative sRNA, function unknown; paralogous to the other QUAD sRNA genes 3193121 R 83333 misc_RNA b4448 2847692 3236396..3236583 NC_000913.2 3236583 psrN 2847692 psrN Escherichia coli K12 Novel sRNA, function unknown 3236396 D 83333 misc_RNA b3123 947634 complement(3268238..3268614) NC_000913.2 3268614 rnpB 947634 rnpB Escherichia coli K12 RNase P, M1 sRNA component; involved in transfer RNA and 4.5S RNA-processing 3268238 R 83333 misc_RNA b4449 2847685 3309247..3309420 NC_000913.2 3309420 psrO 2847685 psrO Escherichia coli K12 Novel sRNA, function unknown 3309247 D 83333 misc_RNA b4450 2847690 3348599..3348706 NC_000913.2 3348706 ryhA 2847690 ryhA Escherichia coli K12 Novel sRNA, function unknown 3348599 D 83333 misc_RNA b4451 2847761 complement(3578950..3579039) NC_000913.2 3579039 ryhB 2847761 ryhB Escherichia coli K12 Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target 3578950 R 83333 misc_RNA b4452 2847729 3662887..3662991 NC_000913.2 3662991 gadY 2847729 gadY Escherichia coli K12 sRNA regulator of gadAB transcriptional activator GadX mRNA 3662887 D 83333 misc_RNA b4454 2847731 3698159..3698222 NC_000913.2 3698222 rdlD 2847731 rdlD Escherichia coli K12 Antisense sRNA RdlD affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD 3698159 D 83333 misc_RNA b4614 5061523 3720099..3720128 NC_000913.2 3720128 sokA 5061523 sokA Escherichia coli K12 3720099 D 83333 misc_RNA b3658 948167 3834245..3834339 NC_000913.2 3834339 selC 948167 selC Escherichia coli K12 Selenocysteyl tRNA(UCA) (converted from serine tRNA) 3834245 D 83333 misc_RNA b4616 5061525 complement(3851141..3851280) NC_000913.2 3851280 istR 5061525 istR Escherichia coli K12 sRNAs IstR-1 and IstR-2, tisB regulators 3851141 R 83333 misc_RNA b4456 2847678 3984455..3984626 NC_000913.2 3984626 ryiA 2847678 ryiA Escherichia coli K12 Novel sRNA, function unknown 3984455 D 83333 misc_RNA b3864 948354 4047922..4048030 NC_000913.2 4048030 spf 948354 spf Escherichia coli K12 Spot 42 sRNA; antisense regulator of galK translation 4047922 D 83333 misc_RNA b4457 2847776 4049059..4049303 NC_000913.2 4049303 csrC 2847776 csrC Escherichia coli K12 CsrC sRNA sequesters CsrA, a carbon flux regulator; also affects biofilms and motilty 4049059 D 83333 misc_RNA b4458 2847701 complement(4156308..4156417) NC_000913.2 4156417 oxyS 2847701 oxyS Escherichia coli K12 OxyS sRNA activates genes that detoxify oxidative damage 4156308 R 83333 misc_RNA b4459 2847753 complement(4275950..4276089) NC_000913.2 4276089 ryjA 2847753 ryjA Escherichia coli K12 Novel sRNA, function unknown 4275950 R 83333 misc_RNA b4624 5061532 4526000..4526089 NC_000913.2 4526089 ryjB 5061532 ryjB Escherichia coli K12 Novel sRNA, function unknown 4526000 D 83333 misc_RNA b4625 5061533 4577858..4577934 NC_000913.2 4577934 ryjC 5061533 ryjC Escherichia coli K12 Novel sRNA, function unknown 4577858 D 83333 misc_RNA