-- dump date 20110802_184312 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 83333000001 SEQ_END SEQ_END NC_000913.2 4639675 4639675 DR NC_000913.2; contig end 4639675..4639675 Escherichia coli K12 NP_414542.1 CDS thrL NC_000913.2 190 255 D GO_process: threonine biosynthetic process [goid 0009088]; thr operon leader peptide 190..255 Escherichia coli K12 944742 NP_414543.1 CDS thrA NC_000913.2 337 2799 D bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal); GO_component: cytoplasm [goid 0005737]; GO_process: threonine biosynthetic process [goid 0009088]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: homoserine biosynthetic process [goid 0009090]; fused aspartokinase I and homoserine dehydrogenase I 337..2799 Escherichia coli K12 945803 NP_414544.1 CDS thrB NC_000913.2 2801 3733 D GO_component: cytoplasm [goid 0005737]; GO_process: threonine biosynthetic process [goid 0009088]; homoserine kinase 2801..3733 Escherichia coli K12 947498 NP_414545.1 CDS thrC NC_000913.2 3734 5020 D GO_component: cytoplasm [goid 0005737]; GO_process: threonine biosynthetic process [goid 0009088]; threonine synthase 3734..5020 Escherichia coli K12 945198 NP_414546.1 CDS yaaX NC_000913.2 5234 5530 D predicted protein 5234..5530 Escherichia coli K12 944747 NP_414547.1 CDS yaaA NC_000913.2 5683 6459 R conserved protein complement(5683..6459) Escherichia coli K12 944749 NP_414548.1 CDS yaaJ NC_000913.2 6529 7959 R inner membrane transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(6529..7959) Escherichia coli K12 944745 NP_414549.1 CDS talB NC_000913.2 8238 9191 D GO_component: cytoplasm [goid 0005737]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; transaldolase B 8238..9191 Escherichia coli K12 944748 NP_414550.1 CDS mog NC_000913.2 9306 9893 D putative molybdochetalase in molybdopterine biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; predicted molybdochelatase 9306..9893 Escherichia coli K12 944760 NP_414551.1 CDS yaaH NC_000913.2 9928 10494 R conserved inner membrane protein associated with acetate transport complement(9928..10494) Escherichia coli K12 944792 NP_414552.1 CDS yaaW NC_000913.2 10643 11356 R conserved protein complement(10643..11356) Escherichia coli K12 944771 NP_414554.1 CDS yaaI NC_000913.2 11382 11786 R predicted protein complement(11382..11786) Escherichia coli K12 944751 NP_414555.1 CDS dnaK NC_000913.2 12163 14079 D chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; GO_process: response to osmotic stress [goid 0006970]; chaperone Hsp70, co-chaperone with DnaJ 12163..14079 Escherichia coli K12 944750 NP_414556.1 CDS dnaJ NC_000913.2 14168 15298 D chaperone with DnaK; heat shock protein; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; chaperone Hsp40, co-chaperone with DnaK 14168..15298 Escherichia coli K12 944753 NP_414557.1 CDS insL NC_000913.2 15445 16557 D IS186/IS421 transposase 15445..16557 Escherichia coli K12 944754 NP_414559.1 CDS mokC NC_000913.2 16751 16960 R regulatory peptide whose translation enables hokC (gef) expression; regulatory protein for HokC, overlaps CDS of hokC complement(16751..16960) Escherichia coli K12 944756 YP_025292.1 CDS hokC NC_000913.2 16751 16903 R small toxic membrane polypeptide; toxic membrane protein, small complement(16751..16903) Escherichia coli K12 2847744 NP_414560.1 CDS nhaA NC_000913.2 17489 18655 D Na+/H antiporter, pH dependent; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to pH [goid 0009268]; sodium-proton antiporter 17489..18655 Escherichia coli K12 944758 NP_414561.1 CDS nhaR NC_000913.2 18715 19620 D transcriptional activator of nhaA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to pH [goid 0009268]; DNA-binding transcriptional activator 18715..19620 Escherichia coli K12 944757 NP_414562.1 CDS insB NC_000913.2 19811 20314 R IS1 transposase InsAB' complement(19811..20314) Escherichia coli K12 944743 NP_414563.1 CDS insA NC_000913.2 20233 20508 R KpLE2 phage-like element; IS1 repressor protein InsA complement(20233..20508) Escherichia coli K12 948449 NP_414564.1 CDS rpsT NC_000913.2 20815 21078 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S20 complement(20815..21078) Escherichia coli K12 944759 NP_414565.1 CDS yaaY NC_000913.2 21181 21399 D predicted protein 21181..21399 Escherichia coli K12 949128 NP_414566.1 CDS ribF NC_000913.2 21407 22348 D GO_component: cytoplasm [goid 0005737]; bifunctional riboflavin kinase/FAD synthetase 21407..22348 Escherichia coli K12 949129 NP_414567.1 CDS ileS NC_000913.2 22391 25207 D isoleucine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; isoleucyl-tRNA synthetase 22391..25207 Escherichia coli K12 944761 NP_414568.1 CDS lspA NC_000913.2 25207 25701 D prolipoprotein signal peptidase (SPase II); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; prolipoprotein signal peptidase (signal peptidase II) 25207..25701 Escherichia coli K12 944800 NP_414569.1 CDS fkpB NC_000913.2 25826 26275 D GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 25826..26275 Escherichia coli K12 944807 NP_414570.1 CDS ispH NC_000913.2 26277 27227 D GO_component: cytoplasm [goid 0005737]; GO_process: response to drug [goid 0042493]; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein 26277..27227 Escherichia coli K12 944777 NP_414571.1 CDS rihC NC_000913.2 27293 28207 D GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; ribonucleoside hydrolase 3 27293..28207 Escherichia coli K12 944796 NP_414572.1 CDS dapB NC_000913.2 28374 29195 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; dihydrodipicolinate reductase 28374..29195 Escherichia coli K12 944762 NP_414573.1 CDS carA NC_000913.2 29651 30799 D GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 29651..30799 Escherichia coli K12 949025 NP_414574.1 CDS carB NC_000913.2 30817 34038 D GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; carbamoyl-phosphate synthase large subunit 30817..34038 Escherichia coli K12 944775 NP_414576.4 CDS caiF NC_000913.2 34300 34695 D transcriptional regulator of cai operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amine catabolic process [goid 0009310]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 34300..34695 Escherichia coli K12 944795 NP_414577.2 CDS caiE NC_000913.2 34781 35371 R possible synthesis of cofactor for carnitine racemase and dehydratase; GO_process: amine catabolic process [goid 0009310]; GO_process: carnitine catabolic process [goid 0042413]; predicted acyl transferase complement(34781..35371) Escherichia coli K12 948999 NP_414578.1 CDS caiD NC_000913.2 35377 36270 R carnitine racemase; GO_process: amine catabolic process [goid 0009310]; GO_process: carnitine catabolic process [goid 0042413]; crotonobetainyl CoA hydratase complement(35377..36270) Escherichia coli K12 948995 NP_414579.3 CDS caiC NC_000913.2 36271 37839 R probable crotonobetaine/carnitine-CoA ligase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amine catabolic process [goid 0009310]; predicted crotonobetaine CoA ligase:carnitine CoA ligase complement(36271..37839) Escherichia coli K12 944886 NP_414580.1 CDS caiB NC_000913.2 37898 39115 R l-carnitine dehydratase; GO_component: cytoplasm [goid 0005737]; GO_process: carnitine catabolic process [goid 0042413]; GO_process: amine catabolic process [goid 0009310]; crotonobetainyl CoA:carnitine CoA transferase complement(37898..39115) Escherichia coli K12 948997 NP_414581.1 CDS caiA NC_000913.2 39244 40386 R probable carnitine operon oxidoreductase; GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; GO_process: glyoxylate cycle [goid 0006097]; GO_process: amine catabolic process [goid 0009310]; GO_process: carnitine catabolic process [goid 0042413]; crotonobetaine reductase subunit II, FAD-binding complement(39244..40386) Escherichia coli K12 949064 NP_414582.1 CDS caiT NC_000913.2 40417 41931 R probable carnitine transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted transporter complement(40417..41931) Escherichia coli K12 944765 NP_414583.2 CDS fixA NC_000913.2 42403 43173 D probable flavoprotein subunit, carnitine metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain 42403..43173 Escherichia coli K12 947316 NP_414584.1 CDS fixB NC_000913.2 43188 44129 D probable flavoprotein subunit, carnitine metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein 43188..44129 Escherichia coli K12 948939 NP_414585.1 CDS fixC NC_000913.2 44180 45466 D flavoprotein; electron transport; GO_process: carnitine catabolic process [goid 0042413]; predicted oxidoreductase with FAD/NAD(P)-binding domain 44180..45466 Escherichia coli K12 948958 NP_414586.1 CDS fixX NC_000913.2 45463 45750 D putative ferredoxin; GO_process: carnitine catabolic process [goid 0042413]; predicted 4Fe-4S ferredoxin-type protein 45463..45750 Escherichia coli K12 948590 NP_414587.1 CDS yaaU NC_000913.2 45807 47138 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 45807..47138 Escherichia coli K12 944766 NP_414588.1 CDS kefF NC_000913.2 47246 47776 D putative NAD(P)H oxidoreductase; flavoprotein subunit for the KefC potassium efflux system 47246..47776 Escherichia coli K12 944767 NP_414589.1 CDS kefC NC_000913.2 47769 49631 D K+ efflux antiporter, glutathione-regulated; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: potassium:hydrogen antiporter activity [goid 0015386]; potassium:proton antiporter 47769..49631 Escherichia coli K12 944773 NP_414590.1 CDS folA NC_000913.2 49823 50302 D dihydrofolate reductase type I; trimethoprim resistance; GO_process: folic acid biosynthetic process [goid 0046656]; dihydrofolate reductase 49823..50302 Escherichia coli K12 944790 NP_414591.1 CDS apaH NC_000913.2 50380 51222 R GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; diadenosine tetraphosphatase complement(50380..51222) Escherichia coli K12 944770 NP_414592.1 CDS apaG NC_000913.2 51229 51606 R protein associated with Co2+ and Mg2+ efflux complement(51229..51606) Escherichia coli K12 944772 NP_414593.1 CDS ksgA NC_000913.2 51609 52430 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; GO_process: response to drug [goid 0042493]; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase complement(51609..52430) Escherichia coli K12 944939 NP_414594.1 CDS pdxA NC_000913.2 52427 53416 R pyridoxine biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent complement(52427..53416) Escherichia coli K12 944919 NP_414595.1 CDS surA NC_000913.2 53416 54702 R survival protein; GO_component: cell outer membrane [goid 0009279]; GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase (PPIase) complement(53416..54702) Escherichia coli K12 944812 NP_414596.1 CDS imp NC_000913.2 54755 57109 R organic solvent tolerance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; exported protein required for envelope biosynthesis and integrity complement(54755..57109) Escherichia coli K12 945011 NP_414597.1 CDS djlA NC_000913.2 57364 58179 D GO_process: protein folding [goid 0006457]; DnaJ-like protein, membrane anchored 57364..58179 Escherichia coli K12 948992 b4659 CDS yabP NC_000913.2 58474 59269 D predicted protein; join(58474..59052,59052..59228,59228..59269) Escherichia coli K12 944776 NP_414600.1 CDS rluA NC_000913.2 59687 60346 R GO_process: RNA modification [goid 0009451]; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) complement(59687..60346) Escherichia coli K12 946262 NP_414601.1 CDS hepA NC_000913.2 60358 63264 R probable ATP-dependent RNA helicase; GO_process: RNA modification [goid 0009451]; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) complement(60358..63264) Escherichia coli K12 948523 NP_414602.1 CDS polB NC_000913.2 63429 65780 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; DNA polymerase II complement(63429..65780) Escherichia coli K12 944779 NP_414603.1 CDS araD NC_000913.2 65855 66550 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; L-ribulose-5-phosphate 4-epimerase complement(65855..66550) Escherichia coli K12 945294 NP_414604.1 CDS araA NC_000913.2 66835 68337 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; L-arabinose isomerase complement(66835..68337) Escherichia coli K12 947511 NP_414605.1 CDS araB NC_000913.2 68348 70048 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; L-ribulokinase complement(68348..70048) Escherichia coli K12 946017 NP_414606.1 CDS araC NC_000913.2 70387 71265 D transcriptional regulator for ara operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 70387..71265 Escherichia coli K12 944780 NP_414607.1 CDS yabI NC_000913.2 71351 72115 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 71351..72115 Escherichia coli K12 944783 NP_414608.1 CDS thiQ NC_000913.2 72229 72927 R putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin transporter subunit complement(72229..72927) Escherichia coli K12 944785 NP_414609.1 CDS thiP NC_000913.2 72911 74521 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: thiamin biosynthetic process [goid 0009228]; fused thiamin transporter subunits of ABC superfamily: membrane components complement(72911..74521) Escherichia coli K12 944784 NP_414610.1 CDS tbpA NC_000913.2 74497 75480 R thiamin-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin transporter subunit complement(74497..75480) Escherichia coli K12 946306 NP_414611.1 CDS sgrR NC_000913.2 75644 77299 R putative transport protein; GO_component: periplasmic space [goid 0042597]; DNA-binding transcriptional regulator complement(75644..77299) Escherichia coli K12 944788 YP_025293.1 CDS setA NC_000913.2 77621 78799 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: lactose/glucose efflux transporter activity [goid 0015543]; GO_process: carbohydrate catabolic process [goid 0016052]; broad specificity sugar efflux system 77621..78799 Escherichia coli K12 944793 NP_414613.1 CDS leuD NC_000913.2 78848 79453 R isopropylmalate isomerase subunit; GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 3-isopropylmalate isomerase subunit complement(78848..79453) Escherichia coli K12 945642 NP_414614.1 CDS leuC NC_000913.2 79464 80864 R 3-isopropylmalate isomerase (dehydratase) subunit; GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 3-isopropylmalate isomerase subunit, dehydratase component complement(79464..80864) Escherichia coli K12 945076 NP_414615.4 CDS leuB NC_000913.2 80867 81958 R GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 3-isopropylmalate dehydrogenase complement(80867..81958) Escherichia coli K12 944798 NP_414616.1 CDS leuA NC_000913.2 81958 83529 R GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 2-isopropylmalate synthase complement(81958..83529) Escherichia coli K12 947465 NP_414617.1 CDS leuL NC_000913.2 83622 83708 R GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; leu operon leader peptide complement(83622..83708) Escherichia coli K12 946072 NP_414618.4 CDS leuO NC_000913.2 84368 85312 D probable transcriptional activator for leuABCD operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: leucine biosynthetic process [goid 0009098]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 84368..85312 Escherichia coli K12 949034 YP_025294.2 CDS ilvI NC_000913.2 85630 87354 D acetolactate synthase III, valine sensitive, large subunit; acetolactate synthase III, large subunit 85630..87354 Escherichia coli K12 948793 NP_414620.1 CDS ilvH NC_000913.2 87357 87848 D acetolactate synthase III, valine sensitive, small subunit; acetolactate synthase III, thiamin-dependent, small subunit 87357..87848 Escherichia coli K12 947267 NP_414622.1 CDS fruR NC_000913.2 88028 89032 D transcriptional repressor of fru operon and others; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glycolysis [goid 0006096]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 88028..89032 Escherichia coli K12 944804 NP_414623.1 CDS mraZ NC_000913.2 89634 90092 D conserved protein 89634..90092 Escherichia coli K12 944810 NP_414624.1 CDS mraW NC_000913.2 90094 91035 D putative apolipoprotein; GO_process: lipoprotein biosynthetic process [goid 0042158]; S-adenosyl-dependent methyltransferase activity on membrane-located substrates 90094..91035 Escherichia coli K12 944806 NP_414625.1 CDS ftsL NC_000913.2 91032 91397 D cell division protein; ingrowth of wall at septum; membrane bound cell division protein at septum containing leucine zipper motif 91032..91397 Escherichia coli K12 944803 NP_414626.1 CDS ftsI NC_000913.2 91413 93179 D septum formation; penicillin-binding protein 3; peptidoglycan synthetase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) 91413..93179 Escherichia coli K12 944799 NP_414627.1 CDS murE NC_000913.2 93166 94653 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase 93166..94653 Escherichia coli K12 944791 NP_414628.1 CDS murF NC_000913.2 94650 96008 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: peptidoglycan metabolic process [goid 0000270]; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase 94650..96008 Escherichia coli K12 944813 NP_414629.1 CDS mraY NC_000913.2 96002 97084 D phospho-N-acetylmuramoyl-pentapeptide transferase?; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; phospho-N-acetylmuramoyl-pentapeptide transferase 96002..97084 Escherichia coli K12 944814 NP_414630.1 CDS murD NC_000913.2 97087 98403 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 97087..98403 Escherichia coli K12 944818 NP_414631.1 CDS ftsW NC_000913.2 98403 99647 D cell division; membrane protein involved in shape determination; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; integral membrane protein involved in stabilizing FstZ ring during cell division 98403..99647 Escherichia coli K12 946322 NP_414632.1 CDS murG NC_000913.2 99644 100711 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylglucosaminyl transferase 99644..100711 Escherichia coli K12 946321 NP_414633.1 CDS murC NC_000913.2 100765 102240 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylmuramate:L-alanine ligase 100765..102240 Escherichia coli K12 946153 NP_414634.1 CDS ddlB NC_000913.2 102233 103153 D D-alanine-D-alanine ligase B, affects cell division; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; D-alanine:D-alanine ligase 102233..103153 Escherichia coli K12 946324 NP_414635.1 CDS ftsQ NC_000913.2 103155 103985 D cell division protein; ingrowth of wall at septum; GO_component: organelle inner membrane [goid 0019866]; membrane anchored protein involved in growth of wall at septum 103155..103985 Escherichia coli K12 944823 NP_414636.1 CDS ftsA NC_000913.2 103982 105244 D ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; ATP-binding cell division protein involved in recruitment of FtsK to Z ring 103982..105244 Escherichia coli K12 944778 NP_414637.1 CDS ftsZ NC_000913.2 105305 106456 D cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase; GO_component: cytoplasm [goid 0005737]; GTP-binding tubulin-like cell division protein 105305..106456 Escherichia coli K12 944786 NP_414638.1 CDS lpxC NC_000913.2 106557 107474 D UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-3-O-acyl N-acetylglucosamine deacetylase 106557..107474 Escherichia coli K12 944816 NP_414639.2 CDS secM NC_000913.2 107705 108217 D regulator of secA translation 107705..108217 Escherichia coli K12 944831 NP_414640.1 CDS secA NC_000913.2 108279 110984 D preprotein translocase; secretion protein; GO_component: cytoplasm [goid 0005737]; preprotein translocase subunit, ATPase 108279..110984 Escherichia coli K12 944821 NP_414641.1 CDS mutT NC_000913.2 111044 111433 D 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions; GO_component: cytoplasm [goid 0005737]; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP 111044..111433 Escherichia coli K12 944824 NP_414643.1 CDS yacG NC_000913.2 111649 111846 R conserved protein complement(111649..111846) Escherichia coli K12 945630 NP_414644.1 CDS yacF NC_000913.2 111856 112599 R conserved protein complement(111856..112599) Escherichia coli K12 944873 NP_414645.1 CDS coaE NC_000913.2 112599 113219 R putative DNA repair protein; dephospho-CoA kinase complement(112599..113219) Escherichia coli K12 949060 NP_414646.1 CDS guaC NC_000913.2 113444 114487 D GO_component: cytoplasm [goid 0005737]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GMP reductase 113444..114487 Escherichia coli K12 948986 NP_414648.1 CDS hofC NC_000913.2 114522 115724 R putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; assembly protein in type IV pilin biogenesis, transmembrane protein complement(114522..115724) Escherichia coli K12 945806 NP_414649.1 CDS hofB NC_000913.2 115714 117099 R putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake; GO_component: fimbrium [goid 0009289]; conserved protein with nucleoside triphosphate hydrolase domain complement(115714..117099) Escherichia coli K12 947481 NP_414650.1 CDS ppdD NC_000913.2 117109 117549 R prelipin peptidase dependent protein; GO_component: fimbrium [goid 0009289]; predicted major pilin subunit complement(117109..117549) Escherichia coli K12 945817 NP_414651.1 CDS nadC NC_000913.2 117752 118645 R GO_process: NAD biosynthetic process [goid 0009435]; quinolinate phosphoribosyltransferase complement(117752..118645) Escherichia coli K12 948869 NP_414652.1 CDS ampD NC_000913.2 118733 119284 D regulates ampC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; N-acetyl-anhydromuranmyl-L-alanine amidase 118733..119284 Escherichia coli K12 948877 NP_414653.1 CDS ampE NC_000913.2 119281 120135 D regulates ampC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted inner membrane protein 119281..120135 Escherichia coli K12 946678 NP_414654.1 CDS aroP NC_000913.2 120178 121551 R aromatic amino acid transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; aromatic amino acid transporter complement(120178..121551) Escherichia coli K12 946018 NP_414655.1 CDS pdhR NC_000913.2 122092 122856 D transcriptional regulator for pyruvate dehydrogenase complex; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glycolysis [goid 0006096]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 122092..122856 Escherichia coli K12 944827 NP_414656.1 CDS aceE NC_000913.2 123017 125680 D pyruvate dehydrogenase (decarboxylase component); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: acetyl-CoA biosynthetic process from pyruvate [goid 0006086]; GO_process: glycolysis [goid 0006096]; GO_process: glyoxylate catabolic process [goid 0009436]; GO_process: anaerobic respiration [goid 0009061]; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding 123017..125680 Escherichia coli K12 944834 NP_414657.1 CDS aceF NC_000913.2 125695 127587 D pyruvate dehydrogenase (dihydrolipoyltransacetylase component); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: acetyl-CoA biosynthetic process from pyruvate [goid 0006086]; GO_process: glycolysis [goid 0006096]; GO_process: glyoxylate catabolic process [goid 0009436]; GO_process: anaerobic respiration [goid 0009061]; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 125695..127587 Escherichia coli K12 944794 NP_414658.1 CDS lpd NC_000913.2 127912 129336 D lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: glycolysis [goid 0006096]; GO_process: acetyl-CoA biosynthetic process from pyruvate [goid 0006086]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glyoxylate catabolic process [goid 0009436]; lipoamide dehydrogenase, E3 component is part of three enzyme complexes 127912..129336 Escherichia coli K12 944854 NP_414659.1 CDS yacH NC_000913.2 129407 131260 R putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted protein complement(129407..131260) Escherichia coli K12 944868 NP_414660.1 CDS acnB NC_000913.2 131615 134212 D aconitate hydrase B; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 131615..134212 Escherichia coli K12 944864 NP_414661.2 CDS yacL NC_000913.2 134388 134750 D conserved protein 134388..134750 Escherichia coli K12 944809 NP_414662.1 CDS speD NC_000913.2 134788 135582 R GO_process: polyamine biosynthetic process [goid 0006596]; S-adenosylmethionine decarboxylase complement(134788..135582) Escherichia coli K12 947719 NP_414663.1 CDS speE NC_000913.2 135598 136464 R spermidine synthase = putrescine aminopropyltransferase; GO_process: polyamine biosynthetic process [goid 0006596]; spermidine synthase (putrescine aminopropyltransferase) complement(135598..136464) Escherichia coli K12 947726 NP_414664.4 CDS yacC NC_000913.2 136570 136917 R predicted protein complement(136570..136917) Escherichia coli K12 948472 NP_414665.1 CDS cueO NC_000913.2 137083 138633 D multicopper oxidase (laccase) 137083..138633 Escherichia coli K12 947736 NP_414666.1 CDS gcd NC_000913.2 138835 141225 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: glucose metabolic process [goid 0006006]; GO_process: carbohydrate catabolic process [goid 0016052]; glucose dehydrogenase complement(138835..141225) Escherichia coli K12 944830 NP_414667.4 CDS hpt NC_000913.2 141431 141967 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; hypoxanthine phosphoribosyltransferase 141431..141967 Escherichia coli K12 946624 NP_414668.1 CDS can NC_000913.2 142008 142670 R putative carbonic anhdrase; carbonic anhydrase complement(142008..142670) Escherichia coli K12 944832 NP_414669.1 CDS yadG NC_000913.2 142779 143705 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 142779..143705 Escherichia coli K12 944833 NP_414670.1 CDS yadH NC_000913.2 143702 144472 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 143702..144472 Escherichia coli K12 944836 NP_414671.1 CDS yadI NC_000913.2 144577 145017 D putative PTS enzyme II B component; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; predicted PTS Enzyme IIA 144577..145017 Escherichia coli K12 947397 NP_414672.1 CDS yadE NC_000913.2 145081 146310 D conserved hypothetical protein; predicted polysaccharide deacetylase lipoprotein 145081..146310 Escherichia coli K12 946536 NP_414673.1 CDS panD NC_000913.2 146314 146694 R GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; aspartate 1-decarboxylase complement(146314..146694) Escherichia coli K12 945686 NP_414674.1 CDS yadD NC_000913.2 146968 147870 D predicted transposase 146968..147870 Escherichia coli K12 944781 NP_414675.1 CDS panC NC_000913.2 147944 148795 R GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; pantothenate synthetase complement(147944..148795) Escherichia coli K12 944958 NP_414676.1 CDS panB NC_000913.2 148807 149601 R GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(148807..149601) Escherichia coli K12 944839 NP_414677.1 CDS yadC NC_000913.2 149715 150953 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(149715..150953) Escherichia coli K12 944837 NP_414678.1 CDS yadK NC_000913.2 151003 151599 R putative fimbrial protein; predicted fimbrial-like adhesin protein complement(151003..151599) Escherichia coli K12 944835 NP_414679.1 CDS yadL NC_000913.2 151626 152231 R putative fimbrial protein; predicted fimbrial-like adhesin protein complement(151626..152231) Escherichia coli K12 944829 NP_414680.4 CDS yadM NC_000913.2 152243 152812 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(152243..152812) Escherichia coli K12 944828 NP_414681.1 CDS htrE NC_000913.2 152829 155426 R probable outer membrane porin protein involved in fimbrial assembly; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane usher protein complement(152829..155426) Escherichia coli K12 944819 NP_414682.1 CDS ecpD NC_000913.2 155461 156201 R probable pilin chaperone similar to PapD; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone complement(155461..156201) Escherichia coli K12 944859 NP_414683.1 CDS yadN NC_000913.2 156299 156883 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(156299..156883) Escherichia coli K12 944841 NP_414684.1 CDS folK NC_000913.2 157253 157732 R 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; GO_process: folic acid biosynthetic process [goid 0046656]; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase complement(157253..157732) Escherichia coli K12 948792 NP_414685.4 CDS pcnB NC_000913.2 157729 159126 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; poly(A) polymerase I complement(157729..159126) Escherichia coli K12 947318 NP_414686.2 CDS yadB NC_000913.2 159186 160082 R putative tRNA synthetase; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glutamyl-Q tRNA(Asp) synthetase complement(159186..160082) Escherichia coli K12 944846 NP_414687.1 CDS dksA NC_000913.2 160149 160604 R dnaK suppressor protein; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein complement(160149..160604) Escherichia coli K12 944850 NP_414688.1 CDS sfsA NC_000913.2 160782 161486 R probable regulator for maltose metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted DNA-binding transcriptional regulator complement(160782..161486) Escherichia coli K12 944855 NP_414689.4 CDS ligT NC_000913.2 161501 162031 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 2'-5' RNA ligase complement(161501..162031) Escherichia coli K12 944848 NP_414690.4 CDS hrpB NC_000913.2 162105 164534 D helicase, ATP-dependent; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; predicted ATP-dependent helicase 162105..164534 Escherichia coli K12 944845 NP_414691.1 CDS mrcB NC_000913.2 164730 167264 D peptidoglycan synthetase; penicillin-binding protein 1B; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino sugar biosynthetic process [goid 0046349]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; fused glycosyl transferase and transpeptidase 164730..167264 Escherichia coli K12 944843 NP_414692.1 CDS fhuA NC_000913.2 167484 169727 D outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; ferrichrome outer membrane transporter 167484..169727 Escherichia coli K12 944856 NP_414693.1 CDS fhuC NC_000913.2 169778 170575 D ATP-binding component of hydroxymate-dependent iron transport; GO_component: cytoplasm [goid 0005737]; iron-hydroxamate transporter subunit 169778..170575 Escherichia coli K12 945250 NP_414694.1 CDS fhuD NC_000913.2 170575 171465 D hydroxamate-dependent iron uptake, cytoplasmic membrane component; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: iron ion transport [goid 0006826]; iron-hydroxamate transporter subunit 170575..171465 Escherichia coli K12 947510 NP_414695.1 CDS fhuB NC_000913.2 171462 173444 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components 171462..173444 Escherichia coli K12 946890 NP_414696.1 CDS hemL NC_000913.2 173602 174882 R glutamate-1-semialdehyde aminotransferase (aminomutase) complement(173602..174882) Escherichia coli K12 946892 NP_414697.1 CDS clcA NC_000913.2 175107 176528 D putative channel transporter; chloride channel, voltage-gated 175107..176528 Escherichia coli K12 946715 NP_414698.1 CDS yadR NC_000913.2 176610 176954 D conserved protein 176610..176954 Escherichia coli K12 944857 NP_414699.1 CDS yadS NC_000913.2 177001 177624 R conserved inner membrane protein complement(177001..177624) Escherichia coli K12 949062 NP_414700.1 CDS btuF NC_000913.2 177662 178462 R GO_component: periplasmic space [goid 0042597]; vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily complement(177662..178462) Escherichia coli K12 947574 NP_414701.1 CDS mtn NC_000913.2 178455 179153 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(178455..179153) Escherichia coli K12 948542 NP_414702.1 CDS dgt NC_000913.2 179237 180754 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; deoxyguanosine triphosphate triphosphohydrolase 179237..180754 Escherichia coli K12 947177 NP_414703.1 CDS degP NC_000913.2 180884 182308 D periplasmic serine protease Do; heat shock protein HtrA; GO_component: periplasmic space [goid 0042597]; GO_process: response to temperature stimulus [goid 0009266]; serine endoprotease (protease Do), membrane-associated 180884..182308 Escherichia coli K12 947139 NP_414704.4 CDS cdaR NC_000913.2 182463 183620 D DNA-binding transcriptional activator 182463..183620 Escherichia coli K12 944860 NP_414705.1 CDS yaeH NC_000913.2 183709 184095 R putative structural protein; conserved protein complement(183709..184095) Escherichia coli K12 947044 NP_414706.2 CDS yaeI NC_000913.2 184257 185069 R predicted phosphatase complement(184257..185069) Escherichia coli K12 945002 NP_414708.1 CDS dapD NC_000913.2 185123 185947 R GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase complement(185123..185947) Escherichia coli K12 944862 NP_414709.1 CDS glnD NC_000913.2 185978 188650 R protein PII; uridylyltransferase acts on regulator of glnA; GO_component: cytoplasm [goid 0005737]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: protein modification [goid 0006464]; uridylyltransferase complement(185978..188650) Escherichia coli K12 944863 NP_414710.1 CDS map NC_000913.2 188712 189506 R GO_process: protein folding [goid 0006457]; methionine aminopeptidase complement(188712..189506) Escherichia coli K12 947882 NP_414711.1 CDS rpsB NC_000913.2 189874 190599 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S2 189874..190599 Escherichia coli K12 947874 NP_414712.1 CDS tsf NC_000913.2 190857 191708 D GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; protein chain elongation factor EF-Ts 190857..191708 Escherichia coli K12 944866 NP_414713.1 CDS pyrH NC_000913.2 191855 192580 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uridylate kinase 191855..192580 Escherichia coli K12 944989 NP_414714.1 CDS frr NC_000913.2 192872 193429 D ribosome releasing factor; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; GO_process: translational attenuation [goid 0009386]; ribosome recycling factor 192872..193429 Escherichia coli K12 946122 NP_414715.1 CDS dxr NC_000913.2 193521 194717 D 1-deoxy-D-xylulose 5-phosphate reductoisomerase 193521..194717 Escherichia coli K12 945019 NP_414716.1 CDS ispU NC_000913.2 194903 195664 D undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase); GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; undecaprenyl pyrophosphate synthase 194903..195664 Escherichia coli K12 944874 NP_414717.2 CDS cdsA NC_000913.2 195677 196534 D CDP-diglyceride synthetase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; CDP-diglyceride synthase 195677..196534 Escherichia coli K12 944876 NP_414718.1 CDS rseP NC_000913.2 196546 197898 D zinc metallopeptidase 196546..197898 Escherichia coli K12 944871 NP_414719.1 CDS yaeT NC_000913.2 197928 200360 D putative outer membrane antigen; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; conserved protein 197928..200360 Escherichia coli K12 944870 NP_414720.1 CDS skp NC_000913.2 200482 200967 D periplasmic molecular chaperone for outer membrane proteins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; periplasmic chaperone 200482..200967 Escherichia coli K12 944861 NP_414721.1 CDS lpxD NC_000913.2 200971 201996 D GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase 200971..201996 Escherichia coli K12 944882 NP_414722.1 CDS fabZ NC_000913.2 202101 202556 D GO_component: cytoplasm [goid 0005737]; (3R)-hydroxymyristol acyl carrier protein dehydratase 202101..202556 Escherichia coli K12 944888 NP_414723.1 CDS lpxA NC_000913.2 202560 203348 D UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-N-acetylglucosamine acetyltransferase 202560..203348 Escherichia coli K12 944849 NP_414724.1 CDS lpxB NC_000913.2 203348 204496 D tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; tetraacyldisaccharide-1-P synthase 203348..204496 Escherichia coli K12 944838 NP_414725.1 CDS rnhB NC_000913.2 204493 205089 D RNAse HII, degrades RNA of DNA-RNA hybrids; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; ribonuclease HII, degrades RNA of DNA-RNA hybrids 204493..205089 Escherichia coli K12 944852 NP_414726.1 CDS dnaE NC_000913.2 205126 208608 D DNA polymerase III, alpha subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III alpha subunit 205126..208608 Escherichia coli K12 944877 NP_414727.1 CDS accA NC_000913.2 208621 209580 D acetylCoA carboxylase, carboxytransferase component, alpha subunit; GO_component: cytoplasm [goid 0005737]; acetyl-CoA carboxylase, carboxytransferase, alpha subunit 208621..209580 Escherichia coli K12 944895 NP_414728.1 CDS ldcC NC_000913.2 209679 211820 D GO_process: glycolysis [goid 0006096]; GO_process: carbohydrate catabolic process [goid 0016052]; lysine decarboxylase 2, constitutive 209679..211820 Escherichia coli K12 944887 NP_414729.4 CDS yaeR NC_000913.2 211877 212266 D predicted lyase 211877..212266 Escherichia coli K12 944875 NP_414730.1 CDS tilS NC_000913.2 212331 213629 D tRNA(Ile)-lysidine synthetase 212331..213629 Escherichia coli K12 944889 NP_414731.2 CDS rof NC_000913.2 213678 213932 R GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; modulator of Rho-dependent transcription termination complement(213678..213932) Escherichia coli K12 944891 YP_026160.1 CDS yaeP NC_000913.2 213925 214125 R conserved hypothetical protein; conserved protein complement(213925..214125) Escherichia coli K12 1450233 NP_414732.1 CDS yaeQ NC_000913.2 214291 214836 D conserved protein 214291..214836 Escherichia coli K12 946809 NP_414733.1 CDS yaeJ NC_000913.2 214833 215255 D conserved protein 214833..215255 Escherichia coli K12 946046 NP_414734.1 CDS nlpE NC_000913.2 215269 215979 D copper homeostasis protein (lipoprotein); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: xenobiotic metabolic process [goid 0006805]; lipoprotein involved with copper homeostasis and adhesion 215269..215979 Escherichia coli K12 946782 NP_414735.4 CDS yaeF NC_000913.2 216179 217003 R predicted lipoprotein complement(216179..217003) Escherichia coli K12 944892 NP_414736.1 CDS proS NC_000913.2 217057 218775 R proline tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; prolyl-tRNA synthetase complement(217057..218775) Escherichia coli K12 949116 NP_414737.1 CDS yaeB NC_000913.2 218887 219594 R conserved protein complement(218887..219594) Escherichia coli K12 949112 NP_414738.1 CDS rcsF NC_000913.2 219591 219995 R regulator in colanic acid synthesis; interacts with RcsB; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted outer membrane protein, signal complement(219591..219995) Escherichia coli K12 949113 NP_414739.1 CDS metQ NC_000913.2 220113 220928 R D-methionine transport protein (ABC superfamily, peri_bind); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; DL-methionine transporter subunit complement(220113..220928) Escherichia coli K12 944893 NP_414740.1 CDS metI NC_000913.2 220968 221621 R D- and L-methionine transport protein (ABC superfamily, membrane); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; DL-methionine transporter subunit complement(220968..221621) Escherichia coli K12 944894 NP_414741.1 CDS metN NC_000913.2 221614 222645 R D- and L-methionine transport protein (ABC superfamily, atp_bind); GO_component: cytoplasm [goid 0005737]; DL-methionine transporter subunit complement(221614..222645) Escherichia coli K12 944896 NP_414742.1 CDS gmhB NC_000913.2 222833 223408 D D,D-heptose 1,7-bisphosphate phosphatase 222833..223408 Escherichia coli K12 944879 NP_414743.1 CDS dkgB NC_000913.2 229167 229970 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 2,5-diketo-D-gluconate reductase B 229167..229970 Escherichia coli K12 944901 NP_414744.1 CDS yafC NC_000913.2 229967 230881 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(229967..230881) Escherichia coli K12 947507 NP_414745.1 CDS yafD NC_000913.2 231122 231922 D conserved protein 231122..231922 Escherichia coli K12 946286 NP_414746.1 CDS yafE NC_000913.2 231926 232549 D putative biotin synthesis protein; GO_process: biotin biosynthetic process [goid 0009102]; predicted S-adenosyl-L-methionine-dependent methyltransferase 231926..232549 Escherichia coli K12 946197 NP_414747.1 CDS mltD NC_000913.2 232597 233955 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: transcription [goid 0006350]; predicted membrane-bound lytic murein transglycosylase D complement(232597..233955) Escherichia coli K12 945694 NP_414748.1 CDS gloB NC_000913.2 234027 234782 R probable hydroxyacylglutathione hydrolase; GO_process: methylglyoxal metabolic process [goid 0009438]; predicted hydroxyacylglutathione hydrolase complement(234027..234782) Escherichia coli K12 944902 NP_414749.2 CDS yafS NC_000913.2 234816 235538 D predicted S-adenosyl-L-methionine-dependent methyltransferase 234816..235538 Escherichia coli K12 944903 NP_414750.1 CDS rnhA NC_000913.2 235535 236002 R RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: proteolysis [goid 0006508]; ribonuclease HI, degrades RNA of DNA-RNA hybrids complement(235535..236002) Escherichia coli K12 946955 NP_414751.1 CDS dnaQ NC_000913.2 236067 236798 D DNA polymerase III, epsilon subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: protein folding [goid 0006457]; DNA polymerase III epsilon subunit 236067..236798 Escherichia coli K12 946441 NP_414752.1 CDS yafT NC_000913.2 237335 238120 D putative aminopeptidase; predicted aminopeptidase 237335..238120 Escherichia coli K12 949009 YP_001165307.1 CDS ykfM NC_000913.2 238257 238736 R hypothetical protein, no homologs complement(238257..238736) Escherichia coli K12 5061498 b0218 CDS yafU NC_000913.2 238746 239102 R pseudogene, predicted inner membrane protein; complement(238746..239102) Escherichia coli K12 946644 b4503 CDS yafF NC_000913.2 239106 239378 D pseudogene, H repeat-associated protein; GO_component: cytoplasm [goid 0005737]; 239106..239378 Escherichia coli K12 1450235 NP_414754.1 CDS yafV NC_000913.2 239419 240189 R putative EC 3.5. amidase-type enzyme; predicted C-N hydrolase family amidase, NAD(P)-binding complement(239419..240189) Escherichia coli K12 946585 NP_414755.1 CDS ivy NC_000913.2 240343 240816 D inhibitor of vertebrate C-type lysozyme, periplasmic; inhibitor of vertebrate C-lysozyme 240343..240816 Escherichia coli K12 946530 NP_414756.2 CDS fadE NC_000913.2 240859 243303 R GO_process: fatty acid oxidation [goid 0019395]; acyl coenzyme A dehydrogenase complement(240859..243303) Escherichia coli K12 949007 NP_414757.1 CDS lpcA NC_000913.2 243543 244121 D phosphoheptose isomerase; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; D-sedoheptulose 7-phosphate isomerase 243543..244121 Escherichia coli K12 949134 NP_414758.1 CDS yafJ NC_000913.2 244327 245094 D putative amidotransferase; predicted amidotransfease 244327..245094 Escherichia coli K12 944906 NP_414759.1 CDS yafK NC_000913.2 245065 245805 R conserved protein complement(245065..245805) Escherichia coli K12 944910 NP_414760.1 CDS yafQ NC_000913.2 245961 246239 R predicted toxin of the YafQ-DinJ toxin-antitoxin system complement(245961..246239) Escherichia coli K12 944911 NP_414761.1 CDS dinJ NC_000913.2 246242 246502 R damage-inducible protein J; GO_process: DNA repair [goid 0006281]; predicted antitoxin of YafQ-DinJ toxin-antitoxin system complement(246242..246502) Escherichia coli K12 944914 NP_414762.1 CDS yafL NC_000913.2 246712 247461 D putative lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted lipoprotein and C40 family peptidase 246712..247461 Escherichia coli K12 944899 NP_414763.1 CDS yafM NC_000913.2 247637 248134 D conserved protein 247637..248134 Escherichia coli K12 944913 b0229 CDS lfhA NC_000913.2 248358 250070 R pseudogene, flagellar system protein, promoterless fragment flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; complement(248358..250070) Escherichia coli K12 944908 b0230 CDS lafU NC_000913.2 250072 250827 D pseudogene, lateral flagellar motor protein fragment; GO_process: taxis [goid 0042330]; 250072..250827 Escherichia coli K12 944921 NP_414766.1 CDS dinB NC_000913.2 250898 251953 D DNA polymerase IV DNA polymerase IV, devoid of proofreading, damage-inducible protein P; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: SOS response [goid 0009432]; DNA polymerase IV 250898..251953 Escherichia coli K12 944922 NP_414767.1 CDS yafN NC_000913.2 252005 252298 D predicted antitoxin of the YafO-YafN toxin-antitoxin system 252005..252298 Escherichia coli K12 944920 NP_414768.1 CDS yafO NC_000913.2 252301 252699 D predicted toxin of the YafO-YafN toxin-antitoxin system 252301..252699 Escherichia coli K12 944916 NP_414769.1 CDS yafP NC_000913.2 252709 253161 D predicted acyltransferase with acyl-CoA N-acyltransferase domain 252709..253161 Escherichia coli K12 944912 b0235 CDS ykfJ NC_000913.2 253479 253685 D conserved protein; 253479..253685 Escherichia coli K12 944924 b0236 CDS prfH NC_000913.2 253702 254202 D pseudogene, predicted peptide chain release factor homolog probable peptide chain release factor; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; 253702..254202 Escherichia coli K12 947374 NP_414772.1 CDS pepD NC_000913.2 254259 255716 R GO_component: cytoplasm [goid 0005737]; aminoacyl-histidine dipeptidase (peptidase D) complement(254259..255716) Escherichia coli K12 945013 NP_414773.1 CDS gpt NC_000913.2 255977 256435 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; guanine-hypoxanthine phosphoribosyltransferase 255977..256435 Escherichia coli K12 944817 NP_414774.1 CDS frsA NC_000913.2 256527 257771 D hydrolase, binds to enzyme IIA(Glc) 256527..257771 Escherichia coli K12 946039 NP_414775.1 CDS crl NC_000913.2 257829 258230 D transcriptional regulator of cryptic csgA gene for curli surface fibers; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator 257829..258230 Escherichia coli K12 945077 NP_414776.1 CDS phoE NC_000913.2 258269 259324 R outer membrane pore protein E (E,Ic,NmpAB); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane phosphoporin protein E complement(258269..259324) Escherichia coli K12 944926 NP_414777.1 CDS proB NC_000913.2 259612 260715 D GO_component: cytoplasm [goid 0005737]; GO_process: proline biosynthetic process [goid 0006561]; gamma-glutamate kinase 259612..260715 Escherichia coli K12 946425 NP_414778.1 CDS proA NC_000913.2 260727 261980 D GO_component: cytoplasm [goid 0005737]; GO_process: proline biosynthetic process [goid 0006561]; gamma-glutamylphosphate reductase 260727..261980 Escherichia coli K12 946680 b4626 CDS ykfN NC_000913.2 262374 262436 R pseudogene, YdiA family; complement(262374..262436) Escherichia coli K12 5625552 NP_414779.1 CDS ykfI NC_000913.2 262552 262893 R CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system complement(262552..262893) Escherichia coli K12 946726 NP_414780.1 CDS yafW NC_000913.2 262914 263231 R CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system complement(262914..263231) Escherichia coli K12 944929 YP_588435.1 CDS ykfH NC_000913.2 263250 263471 R GO_component: cytoplasm [goid 0005737]; predicted protein complement(263250..263471) Escherichia coli K12 1450236 NP_414781.1 CDS ykfG NC_000913.2 263480 263956 R putative DNA repair protein; CP4-6 prophage; predicted DNA repair protein complement(263480..263956) Escherichia coli K12 944930 NP_414782.1 CDS yafX NC_000913.2 263972 264430 R CP4-6 prophage; predicted protein complement(263972..264430) Escherichia coli K12 944931 NP_414783.1 CDS ykfF NC_000913.2 264528 264767 R CP4-6 prophage; predicted protein complement(264528..264767) Escherichia coli K12 948839 NP_414784.1 CDS ykfB NC_000913.2 264844 265311 R CP4-6 prophage; predicted protein complement(264844..265311) Escherichia coli K12 946846 NP_414785.4 CDS yafY NC_000913.2 265334 265777 R hypothetical transcriptional regulator; CP4-6 prophage; predicted DNA-binding transcriptional regulator complement(265334..265777) Escherichia coli K12 944934 b4627 CDS ykfL NC_000913.2 265777 265998 R pseudogene, CP4-6 putative prophage remnant; complement(265777..265998) Escherichia coli K12 5625553 b4628 CDS ykfK NC_000913.2 266000 266191 R CP4-6 prophage; predicted DNA-binding transcriptional regulator; complement(266000..266191) Escherichia coli K12 5625554 NP_414786.4 CDS yafZ NC_000913.2 266408 267229 R CP4-6 prophage; conserved protein complement(266408..267229) Escherichia coli K12 945373 NP_414787.4 CDS ykfA NC_000913.2 267321 268184 R putative GTP-binding protein; CP4-6 prophage; predicted GTP-binding protein complement(267321..268184) Escherichia coli K12 949004 NP_414788.1 CDS perR NC_000913.2 268513 269406 R peroxide resistance protein; CP4-6 prophage; predicted DNA-binding transcriptional regulator complement(268513..269406) Escherichia coli K12 945417 b4587 CDS insN NC_000913.2 269502 271413 D KpLE2 phage-like element; partial regulator of insertion element IS911B;IS, phage, Tn; Transposon-related functions;8.3 extrachromosomal; transposon related; join(269502..269759,270988..271413) Escherichia coli K12 5061501 NP_414790.1 CDS insI NC_000913.2 269827 270978 D KpLE2 phage-like element; IS30 transposase 269827..270978 Escherichia coli K12 949005 b0258 CDS ykfC NC_000913.2 272071 273178 D CP4-6 prophage; conserved protein; 272071..273178 Escherichia coli K12 944940 NP_414793.1 CDS insH NC_000913.2 273325 274341 R IS5 transposase and trans-activator complement(273325..274341) Escherichia coli K12 944941 NP_414794.4 CDS mmuP NC_000913.2 274549 275952 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: methionine biosynthetic process [goid 0009086]; CP4-6 prophage; predicted S-methylmethionine transporter 274549..275952 Escherichia coli K12 946284 NP_414795.1 CDS mmuM NC_000913.2 275939 276871 D GO_process: glycerol metabolic process [goid 0006071]; GO_process: methionine biosynthetic process [goid 0009086]; CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase 275939..276871 Escherichia coli K12 946143 NP_414796.2 CDS afuC NC_000913.2 276980 278026 R putative ATP-binding component of a transport system; CP4-6 prophage; predicted ferric transporter subunit complement(276980..278026) Escherichia coli K12 947676 b0263 CDS afuB NC_000913.2 278038 278385 R pseudogene, CP4-6 prophage; predicted ferric transporter subunit; complement(278038..278385) Escherichia coli K12 947073 NP_414798.1 CDS insB NC_000913.2 278402 278905 R IS1 transposase InsAB' complement(278402..278905) Escherichia coli K12 947698 NP_414799.1 CDS insA NC_000913.2 278824 279099 R KpLE2 phage-like element; IS1 repressor protein InsA complement(278824..279099) Escherichia coli K12 944946 YP_588436.1 CDS ykgN NC_000913.2 279248 279586 R predicted IS protein complement(279248..279586) Escherichia coli K12 1450237 NP_414800.2 CDS yagB NC_000913.2 279609 279959 R CP4-6 prophage; conserved protein complement(279609..279959) Escherichia coli K12 944944 NP_414801.1 CDS yagA NC_000913.2 280053 281207 R CP4-6 prophage; predicted DNA-binding transcriptional regulator complement(280053..281207) Escherichia coli K12 944937 NP_414802.1 CDS yagE NC_000913.2 281481 282410 D putative lyase/synthase; CP4-6 prophage; predicted lyase/synthase 281481..282410 Escherichia coli K12 944925 NP_414803.1 CDS yagF NC_000913.2 282425 284392 D putative dehydratase; CP4-6 prophage; predicted dehydratase 282425..284392 Escherichia coli K12 944928 NP_414804.1 CDS yagG NC_000913.2 284619 286001 D putative permease; CP4-6 prophage; predicted sugar transporter 284619..286001 Escherichia coli K12 944947 NP_414805.1 CDS yagH NC_000913.2 286013 287623 D putative beta-xylosidase; CP4-6 prophage; predicted xylosidase/arabinosidase 286013..287623 Escherichia coli K12 944949 NP_414806.1 CDS yagI NC_000913.2 287628 288386 R putative regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; CP4-6 prophage; predicted DNA-binding transcriptional regulator complement(287628..288386) Escherichia coli K12 945016 NP_414807.1 CDS argF NC_000913.2 288525 289529 R ornithine carbamoyltransferase 2, chain F; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; CP4-6 prophage; ornithine carbamoyltransferase 2, chain F complement(288525..289529) Escherichia coli K12 944844 NP_414808.1 CDS insB NC_000913.2 289873 290376 R IS1 transposase InsAB' complement(289873..290376) Escherichia coli K12 944950 NP_414809.1 CDS insA NC_000913.2 290295 290570 R KpLE2 phage-like element; IS1 repressor protein InsA complement(290295..290570) Escherichia coli K12 944951 NP_414810.1 CDS yagJ NC_000913.2 290724 291455 D CP4-6 prophage; predicted protein 290724..291455 Escherichia coli K12 949094 NP_414811.1 CDS yagK NC_000913.2 291546 292172 R CP4-6 prophage; conserved protein complement(291546..292172) Escherichia coli K12 945847 NP_414812.1 CDS yagL NC_000913.2 292444 293142 R DNA-binding protein; CP4-6 prophage; DNA-binding protein complement(292444..293142) Escherichia coli K12 945845 NP_414813.1 CDS yagM NC_000913.2 293169 294023 R CP4-6 prophage; predicted protein complement(293169..294023) Escherichia coli K12 944959 NP_414814.1 CDS yagN NC_000913.2 294363 294803 R CP4-6 prophage; predicted protein complement(294363..294803) Escherichia coli K12 945349 NP_414815.1 CDS intF NC_000913.2 294920 296320 R putative phage integrase; CP4-6 prophage; predicted phage integrase complement(294920..296320) Escherichia coli K12 947351 NP_414816.1 CDS yagP NC_000913.2 296605 297015 R putative transcriptional regulator LYSR-type; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator complement(296605..297015) Escherichia coli K12 947411 NP_414817.1 CDS yagQ NC_000913.2 296994 297950 R conserved protein complement(296994..297950) Escherichia coli K12 945010 NP_414818.1 CDS yagR NC_000913.2 297960 300158 R predicted oxidoreductase with molybdenum-binding domain complement(297960..300158) Escherichia coli K12 944961 NP_414819.1 CDS yagS NC_000913.2 300155 301111 R predicted oxidoreductase with FAD-binding domain complement(300155..301111) Escherichia coli K12 945710 NP_414820.1 CDS yagT NC_000913.2 301108 301797 R putative xanthine dehydrogenase; predicted xanthine dehydrogenase, 2Fe-2S subunit complement(301108..301797) Escherichia coli K12 945330 NP_414821.1 CDS yagU NC_000913.2 302215 302829 D conserved inner membrane protein 302215..302829 Escherichia coli K12 945677 NP_414822.1 CDS ykgJ NC_000913.2 303077 303406 R putative ferredoxin; GO_function: electron carrier activity [goid 0009055]; predicted ferredoxin complement(303077..303406) Escherichia coli K12 945905 NP_414823.2 CDS yagV NC_000913.2 303719 304429 R conserved protein complement(303719..304429) Escherichia coli K12 946631 NP_414824.1 CDS yagW NC_000913.2 304398 306041 R putative receptor; predicted receptor complement(304398..306041) Escherichia coli K12 947349 NP_414825.1 CDS yagX NC_000913.2 306031 308556 R putative enzyme; predicted aromatic compound dioxygenase complement(306031..308556) Escherichia coli K12 947606 NP_414826.1 CDS matC NC_000913.2 308582 309250 R predicted protein complement(308582..309250) Escherichia coli K12 948806 NP_414827.1 CDS matB NC_000913.2 309308 309895 R conserved protein complement(309308..309895) Escherichia coli K12 948759 NP_414828.1 CDS matA NC_000913.2 309970 310560 R putative regulator; predicted regulator complement(309970..310560) Escherichia coli K12 944966 NP_414829.1 CDS ykgL NC_000913.2 311336 311563 D predicted protein 311336..311563 Escherichia coli K12 944962 YP_588437.1 CDS ykgO NC_000913.2 311598 311738 R rpmJ (L36) paralog complement(311598..311738) Escherichia coli K12 1450238 NP_414830.1 CDS ykgM NC_000913.2 311738 312001 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; rpmJ (L36) paralog complement(311738..312001) Escherichia coli K12 944960 b4630 CDS ykgP NC_000913.2 312940 313029 R pseudogene, oxidoreductase family; complement(312940..313029) Escherichia coli K12 5625556 b0297 CDS eaeH NC_000913.2 313581 314452 D attaching and effacing protein, pathogenesis factor;factor; Not classified; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 313581..314452 Escherichia coli K12 944957 NP_414832.1 CDS insE NC_000913.2 314506 314814 D IS3 element protein InsE 314506..314814 Escherichia coli K12 944952 NP_414833.1 CDS insF NC_000913.2 314811 315677 D IS3 element protein InsF 314811..315677 Escherichia coli K12 944948 b0300 CDS ykgA NC_000913.2 315710 316393 R predicted DNA-binding transcriptional regulator;putative regulator; Not classified putative ARAC-type regulatory protein; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; complement(315710..316393) Escherichia coli K12 944956 b4631 CDS ykgQ NC_000913.2 316663 316791 D pseudogene, putative dehydrogenase; 316663..316791 Escherichia coli K12 5625557 NP_414835.2 CDS ykgB NC_000913.2 316950 317543 R conserved inner membrane protein complement(316950..317543) Escherichia coli K12 944974 NP_414837.2 CDS ykgI NC_000913.2 317555 317791 R the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene, and has been deaccessioned; predicted protein complement(317555..317791) Escherichia coli K12 945658 NP_414838.2 CDS ykgC NC_000913.2 317900 319225 R putative oxidoreductase; predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain complement(317900..319225) Escherichia coli K12 946092 NP_414839.1 CDS ykgD NC_000913.2 319451 320305 D putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 319451..320305 Escherichia coli K12 945616 NP_414840.1 CDS ykgE NC_000913.2 320832 321551 D putative dehydrogenase subunit; predicted oxidoreductase 320832..321551 Escherichia coli K12 948438 NP_414841.1 CDS ykgF NC_000913.2 321562 322989 D predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain 321562..322989 Escherichia coli K12 944980 NP_414842.4 CDS ykgG NC_000913.2 322982 323677 D putative transporter; predicted transporter 322982..323677 Escherichia coli K12 945906 NP_414844.1 CDS ykgH NC_000913.2 323920 324588 R predicted inner membrane protein complement(323920..324588) Escherichia coli K12 947513 NP_414845.1 CDS betA NC_000913.2 324801 326471 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: betaine biosynthetic process [goid 0006578]; GO_process: response to osmotic stress [goid 0006970]; choline dehydrogenase, a flavoprotein complement(324801..326471) Escherichia coli K12 945716 NP_414846.1 CDS betB NC_000913.2 326485 327957 R NAD+-dependent betaine aldehyde dehydrogenase; GO_process: betaine biosynthetic process [goid 0006578]; GO_process: response to osmotic stress [goid 0006970]; betaine aldehyde dehydrogenase, NAD-dependent complement(326485..327957) Escherichia coli K12 947376 NP_414847.3 CDS betI NC_000913.2 327971 328558 R probably transcriptional repressor of bet genes; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; DNA-binding transcriptional repressor complement(327971..328558) Escherichia coli K12 944981 NP_414848.1 CDS betT NC_000913.2 328687 330720 D high-affinity choline transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: betaine biosynthetic process [goid 0006578]; choline transporter of high affinity 328687..330720 Escherichia coli K12 945079 NP_414849.1 CDS yahA NC_000913.2 331595 332683 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 331595..332683 Escherichia coli K12 947459 NP_414850.1 CDS yahB NC_000913.2 332725 333657 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-bindng transcriptional regulator complement(332725..333657) Escherichia coli K12 945278 NP_414851.1 CDS yahC NC_000913.2 333749 334246 R predicted inner membrane protein complement(333749..334246) Escherichia coli K12 947337 NP_414852.1 CDS yahD NC_000913.2 334504 335109 D putative transcription factor; predicted transcriptional regulator with ankyrin domain 334504..335109 Escherichia coli K12 947681 NP_414853.1 CDS yahE NC_000913.2 335149 336012 D predicted protein 335149..336012 Escherichia coli K12 947134 NP_414854.1 CDS yahF NC_000913.2 336002 337549 D putative oxidoreductase subunit; predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain 336002..337549 Escherichia coli K12 947298 NP_414855.1 CDS yahG NC_000913.2 337549 338967 D conserved protein 337549..338967 Escherichia coli K12 945379 NP_414857.1 CDS yahI NC_000913.2 339389 340339 D putative kinase; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; predicted carbamate kinase-like protein 339389..340339 Escherichia coli K12 944984 NP_414858.1 CDS yahJ NC_000913.2 340349 341731 D putative deaminase; GO_process: amine catabolic process [goid 0009310]; predicted deaminase with metallo-dependent hydrolase domain 340349..341731 Escherichia coli K12 944976 NP_414859.1 CDS yahK NC_000913.2 342108 343157 D putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 342108..343157 Escherichia coli K12 944975 NP_414860.1 CDS yahL NC_000913.2 343400 344215 D predicted protein 343400..344215 Escherichia coli K12 944970 NP_414861.2 CDS yahM NC_000913.2 344628 344873 D predicted protein 344628..344873 Escherichia coli K12 944969 NP_414862.1 CDS yahN NC_000913.2 344890 345561 R putative cytochrome subunit of dehydrogenase; neutral amino-acid efflux system complement(344890..345561) Escherichia coli K12 944968 NP_414863.1 CDS yahO NC_000913.2 345708 345983 D predicted protein 345708..345983 Escherichia coli K12 944985 NP_414864.1 CDS prpR NC_000913.2 346081 347667 R regulator for prp operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(346081..347667) Escherichia coli K12 944987 NP_414865.1 CDS prpB NC_000913.2 347906 348796 D putative phosphonomutase 2; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; 2-methylisocitrate lyase 347906..348796 Escherichia coli K12 944990 NP_414867.1 CDS prpC NC_000913.2 349236 350405 D putative citrate synthase; propionate metabolism?; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; 2-methylcitrate synthase 349236..350405 Escherichia coli K12 947528 NP_414868.1 CDS prpD NC_000913.2 350439 351890 D GO_process: carbohydrate catabolic process [goid 0016052]; 2-methylcitrate dehydratase 350439..351890 Escherichia coli K12 945931 NP_414869.1 CDS prpE NC_000913.2 351930 353816 D putative propionyl-CoA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; predicted propionyl-CoA synthetase with ATPase domain 351930..353816 Escherichia coli K12 946891 NP_414870.1 CDS codB NC_000913.2 354146 355405 D cytosine permease/transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytosine transporter 354146..355405 Escherichia coli K12 944994 NP_414871.1 CDS codA NC_000913.2 355395 356678 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytosine deaminase 355395..356678 Escherichia coli K12 944996 NP_414872.3 CDS cynR NC_000913.2 357015 357914 R cyn operon positive regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual regulator complement(357015..357914) Escherichia coli K12 945001 NP_414873.1 CDS cynT NC_000913.2 358023 358682 D GO_component: cytoplasm [goid 0005737]; GO_process: cyanate catabolic process [goid 0009440]; GO_process: xenobiotic metabolic process [goid 0006805]; carbonic anhydrase 358023..358682 Escherichia coli K12 946548 NP_414874.1 CDS cynS NC_000913.2 358713 359183 D cyanate aminohydrolase, cyanase; GO_process: cyanate catabolic process [goid 0009440]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: xenobiotic metabolic process [goid 0006805]; cyanate aminohydrolase 358713..359183 Escherichia coli K12 948998 NP_414875.1 CDS cynX NC_000913.2 359216 360370 D cyanate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cyanate catabolic process [goid 0009440]; GO_process: xenobiotic metabolic process [goid 0006805]; predicted cyanate transporter 359216..360370 Escherichia coli K12 946770 NP_414876.1 CDS lacA NC_000913.2 360473 361084 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; thiogalactoside acetyltransferase complement(360473..361084) Escherichia coli K12 945674 NP_414877.1 CDS lacY NC_000913.2 361150 362403 R galactoside permease (lactose permease, M protein) (MFS family); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; lactose/galactose transporter complement(361150..362403) Escherichia coli K12 949083 NP_414878.1 CDS lacZ NC_000913.2 362455 365529 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; beta-D-galactosidase complement(362455..365529) Escherichia coli K12 945006 NP_414879.3 CDS lacI NC_000913.2 365652 366734 R transcriptional repressor of the lac operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(365652..366734) Escherichia coli K12 945007 NP_414880.2 CDS mhpR NC_000913.2 366811 367644 R transcriptional regulator for mhp operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, 3HPP-binding complement(366811..367644) Escherichia coli K12 945938 NP_414881.1 CDS mhpA NC_000913.2 367835 369499 D GO_process: fatty acid oxidation [goid 0019395]; 3-(3-hydroxyphenyl)propionate hydroxylase 367835..369499 Escherichia coli K12 945197 NP_414882.1 CDS mhpB NC_000913.2 369501 370445 D GO_process: fatty acid oxidation [goid 0019395]; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase 369501..370445 Escherichia coli K12 945047 NP_414883.4 CDS mhpC NC_000913.2 370448 371329 D GO_process: fatty acid oxidation [goid 0019395]; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase 370448..371329 Escherichia coli K12 944954 NP_414884.2 CDS mhpD NC_000913.2 371339 372148 D GO_process: fatty acid oxidation [goid 0019395]; 2-keto-4-pentenoate hydratase 371339..372148 Escherichia coli K12 944768 NP_414885.1 CDS mhpF NC_000913.2 372145 373095 D acetaldehyde dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; acetaldehyde-CoA dehydrogenase II, NAD-binding 372145..373095 Escherichia coli K12 945008 NP_414886.1 CDS mhpE NC_000913.2 373092 374105 D 4-hydroxy-2-ketovalerate aldolase; GO_process: fatty acid oxidation [goid 0019395]; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I 373092..374105 Escherichia coli K12 945012 NP_414887.2 CDS mhpT NC_000913.2 374683 375894 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fatty acid oxidation [goid 0019395]; predicted 3-hydroxyphenylpropionic transporter 374683..375894 Escherichia coli K12 944997 NP_414888.4 CDS yaiL NC_000913.2 375996 376535 D GO_component: cytoplasm [goid 0005737]; nucleoprotein/polynucleotide-associated enzyme 375996..376535 Escherichia coli K12 944993 NP_414889.1 CDS frmB NC_000913.2 376759 377592 R putative S-formylglutathione hydrolase; predicted esterase complement(376759..377592) Escherichia coli K12 944991 NP_414890.1 CDS frmA NC_000913.2 377686 378795 R alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent; GO_component: cytoplasm [goid 0005737]; GO_process: fermentation [goid 0006113]; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase complement(377686..378795) Escherichia coli K12 944988 NP_414891.4 CDS frmR NC_000913.2 378830 379105 R repressor of frmRAB; regulator protein that represses frmRAB operon complement(378830..379105) Escherichia coli K12 944986 NP_414892.1 CDS yaiO NC_000913.2 379293 380066 R predicted protein complement(379293..380066) Escherichia coli K12 945014 b4579 CDS yaiX NC_000913.2 380068 382096 R predicted protein putative transferase nonfunctional; interruped by IS2; complement(join(380068..380483,381815..382096)) Escherichia coli K12 4056039 NP_414894.2 CDS insC NC_000913.2 380575 380940 D KpLE2 phage-like element; IS2 insertion element repressor InsA 380575..380940 Escherichia coli K12 945025 NP_414895.1 CDS insD NC_000913.2 380898 381803 D KpLE2 phage-like element; IS2 insertion element transposase InsAB' 380898..381803 Escherichia coli K12 945203 NP_414897.1 CDS yaiP NC_000913.2 381963 383159 R polysaccharide metabolism; GO_process: polysaccharide biosynthetic process [goid 0000271]; predicted glucosyltransferase complement(381963..383159) Escherichia coli K12 945308 NP_414898.4 CDS yaiS NC_000913.2 383283 383840 R conserved protein complement(383283..383840) Escherichia coli K12 946967 NP_414899.2 CDS tauA NC_000913.2 384456 385418 D taurine transport system periplasmic protein; GO_component: periplasmic space [goid 0042597]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: amine catabolic process [goid 0009310]; taurine transporter subunit 384456..385418 Escherichia coli K12 945030 NP_414900.1 CDS tauB NC_000913.2 385431 386198 D taurine ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: amine catabolic process [goid 0009310]; taurine transporter subunit 385431..386198 Escherichia coli K12 945027 NP_414901.1 CDS tauC NC_000913.2 386195 387022 D taurine transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: amine catabolic process [goid 0009310]; taurine transporter subunit 386195..387022 Escherichia coli K12 945026 NP_414902.1 CDS tauD NC_000913.2 387019 387870 D GO_process: amine catabolic process [goid 0009310]; GO_process: sulfur metabolic process [goid 0006790]; taurine dioxygenase, 2-oxoglutarate-dependent 387019..387870 Escherichia coli K12 945021 NP_414903.4 CDS hemB NC_000913.2 387977 388951 R 5-aminolevulinate dehydratase = porphobilinogen synthase; porphobilinogen synthase complement(387977..388951) Escherichia coli K12 945017 b4580 CDS yaiT NC_000913.2 389475 393642 D predicted protein;putative structure; Not classified putative flagellin structural protein interrupted by IS3; join(389475..390932,392191..393642) Escherichia coli K12 4056040 NP_414906.1 CDS insF NC_000913.2 390963 391829 R IS3 element protein InsF complement(390963..391829) Escherichia coli K12 945036 NP_414907.1 CDS insE NC_000913.2 391826 392134 R IS3 element protein InsE complement(391826..392134) Escherichia coli K12 946900 NP_414909.1 CDS yaiV NC_000913.2 393685 394353 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted DNA-binding transcriptional regulator 393685..394353 Escherichia coli K12 946902 NP_414910.1 CDS ampH NC_000913.2 394354 395511 R GO_process: response to drug [goid 0042493]; beta-lactamase/D-alanine carboxypeptidase complement(394354..395511) Escherichia coli K12 946904 NP_414911.1 CDS sbmA NC_000913.2 395863 397083 D sensitivity to microcin B17, possibly envelop protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted transporter 395863..397083 Escherichia coli K12 946884 NP_414912.1 CDS yaiW NC_000913.2 397096 398190 D predicted DNA-binding transcriptional regulator 397096..398190 Escherichia coli K12 945038 NP_414913.1 CDS yaiY NC_000913.2 398249 398557 R predicted inner membrane protein complement(398249..398557) Escherichia coli K12 945223 NP_414914.2 CDS yaiZ NC_000913.2 398817 399029 D predicted inner membrane protein 398817..399029 Escherichia coli K12 947355 NP_414915.1 CDS ddlA NC_000913.2 399053 400147 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; D-alanine-D-alanine ligase A complement(399053..400147) Escherichia coli K12 945313 NP_414916.1 CDS iraP NC_000913.2 400610 400870 D predicted protein 400610..400870 Escherichia coli K12 947709 NP_414917.2 CDS phoA NC_000913.2 400971 402386 D alkaline phosphatase start codon corrected; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; bacterial alkaline phosphatase 400971..402386 Escherichia coli K12 945041 NP_414918.4 CDS psiF NC_000913.2 402505 402825 D induced by phosphate starvation; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; conserved protein 402505..402825 Escherichia coli K12 945040 NP_414919.1 CDS adrA NC_000913.2 402927 404042 D predicted diguanylate cyclase 402927..404042 Escherichia coli K12 945037 NP_414920.1 CDS proC NC_000913.2 404059 404868 R pyrroline-5-carboxylate reductase; GO_component: cytoplasm [goid 0005737]; GO_process: proline biosynthetic process [goid 0006561]; pyrroline-5-carboxylate reductase, NAD(P)-binding complement(404059..404868) Escherichia coli K12 945034 NP_414921.2 CDS yaiI NC_000913.2 404988 405446 D conserved protein 404988..405446 Escherichia coli K12 945033 NP_414922.1 CDS aroL NC_000913.2 405629 406153 D GO_component: cytoplasm [goid 0005737]; GO_process: chorismate biosynthetic process [goid 0009423]; shikimate kinase II 405629..406153 Escherichia coli K12 945031 NP_414923.1 CDS yaiA NC_000913.2 406203 406394 D predicted protein 406203..406394 Escherichia coli K12 945043 NP_414924.1 CDS aroM NC_000913.2 406652 407329 D protein of aro operon, regulated by aroR; conserved protein 406652..407329 Escherichia coli K12 945045 NP_414925.1 CDS yaiE NC_000913.2 407401 407685 D conserved protein 407401..407685 Escherichia coli K12 945048 b0392 CDS ykiA NC_000913.2 407893 408174 D pseudogene; 407893..408174 Escherichia coli K12 945423 NP_414927.1 CDS rdgC NC_000913.2 408332 409243 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA-binding protein, non-specific complement(408332..409243) Escherichia coli K12 948585 NP_414928.2 CDS mak NC_000913.2 409368 410276 D possible NAGC-like transcriptional regulator; GO_process: carbohydrate catabolic process [goid 0016052]; manno(fructo)kinase 409368..410276 Escherichia coli K12 949086 NP_414930.3 CDS araJ NC_000913.2 410521 411705 R involved in either transport or processing of arabinose polymers; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted transporter complement(410521..411705) Escherichia coli K12 949077 NP_414931.1 CDS sbcC NC_000913.2 411831 414977 R ATP-dependent dsDNA exonuclease; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; exonuclease, dsDNA, ATP-dependent complement(411831..414977) Escherichia coli K12 949076 NP_414932.1 CDS sbcD NC_000913.2 414974 416176 R ATP-dependent dsDNA exonuclease; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; exonuclease, dsDNA, ATP-dependent complement(414974..416176) Escherichia coli K12 945049 NP_414933.1 CDS phoB NC_000913.2 416366 417055 D positive response regulator for pho regulon, sensor is PhoR (or CreC); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) 416366..417055 Escherichia coli K12 945046 NP_414934.1 CDS phoR NC_000913.2 417113 418408 D positive and negative sensor protein for pho regulon; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with PhoB 417113..418408 Escherichia coli K12 945044 NP_414935.1 CDS brnQ NC_000913.2 418815 420134 D branched chain amino acid transport system II carrier protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: leucine biosynthetic process [goid 0009098]; GO_process: amino acid catabolic process [goid 0009063]; predicted branched chain amino acid transporter (LIV-II) 418815..420134 Escherichia coli K12 945042 NP_414936.1 CDS proY NC_000913.2 420210 421583 D proline permease transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: arginine biosynthetic process [goid 0006526]; predicted cryptic proline transporter 420210..421583 Escherichia coli K12 945050 NP_414937.1 CDS malZ NC_000913.2 421739 423556 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; maltodextrin glucosidase 421739..423556 Escherichia coli K12 949131 NP_414938.1 CDS acpH NC_000913.2 423561 424142 R putative glycoprotein; conserved protein complement(423561..424142) Escherichia coli K12 949132 NP_414939.1 CDS queA NC_000913.2 424235 425305 D synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 424235..425305 Escherichia coli K12 944905 NP_414940.1 CDS tgt NC_000913.2 425361 426488 D GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA-guanine transglycosylase 425361..426488 Escherichia coli K12 949130 NP_414941.1 CDS yajC NC_000913.2 426511 426843 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; SecYEG protein translocase auxillary subunit 426511..426843 Escherichia coli K12 945374 NP_414942.1 CDS secD NC_000913.2 426871 428718 D protein secretion; membrane protein, part of the channel; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; SecYEG protein translocase auxillary subunit 426871..428718 Escherichia coli K12 949133 NP_414943.1 CDS secF NC_000913.2 428729 429700 D protein secretion, membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; SecYEG protein translocase auxillary subunit 428729..429700 Escherichia coli K12 949120 NP_414944.1 CDS yajD NC_000913.2 429829 430176 D conserved protein 429829..430176 Escherichia coli K12 945051 NP_414945.1 CDS tsx NC_000913.2 430353 431237 R nucleoside channel; receptor of phage T6 and colicin K; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; nucleoside channel, receptor of phage T6 and colicin K complement(430353..431237) Escherichia coli K12 946242 NP_414946.4 CDS yajI NC_000913.2 431536 432075 R predicted lipoprotein complement(431536..432075) Escherichia coli K12 947233 NP_414947.1 CDS nrdR NC_000913.2 432226 432675 D conserved protein 432226..432675 Escherichia coli K12 947437 NP_414948.1 CDS ribD NC_000913.2 432679 433782 D fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase 432679..433782 Escherichia coli K12 945620 NP_414949.1 CDS ribE NC_000913.2 433871 434341 D riboflavin synthase, beta chain; riboflavin synthase beta chain 433871..434341 Escherichia coli K12 946453 NP_414950.1 CDS nusB NC_000913.2 434361 434780 D transcription termination; L factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; transcription antitermination protein 434361..434780 Escherichia coli K12 945054 NP_414951.1 CDS thiL NC_000913.2 434858 435835 D GO_process: thiamin biosynthetic process [goid 0009228]; thiamin-monophosphate kinase 434858..435835 Escherichia coli K12 947387 NP_414952.1 CDS pgpA NC_000913.2 435813 436331 D phosphatidylglycerophosphatase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylglycerophosphatase A 435813..436331 Escherichia coli K12 947542 NP_414953.2 CDS yajO NC_000913.2 436385 437359 R putative NAD(P)H-dependent xylose reductase; 2-carboxybenzaldehyde reductase, function unknown complement(436385..437359) Escherichia coli K12 946903 NP_414954.1 CDS dxs NC_000913.2 437539 439401 R 1-deoxyxylulose-5-phosphate synthase; flavoprotein; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: thiamin biosynthetic process [goid 0009228]; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring complement(437539..439401) Escherichia coli K12 945060 NP_414955.1 CDS ispA NC_000913.2 439426 440325 R GO_component: cytoplasm [goid 0005737]; geranyltranstransferase complement(439426..440325) Escherichia coli K12 945064 NP_414956.1 CDS xseB NC_000913.2 440325 440567 R exonuclease VII, small subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; exonuclease VII small subunit complement(440325..440567) Escherichia coli K12 945069 NP_414957.1 CDS thiI NC_000913.2 440773 442221 D GO_process: thiamin biosynthetic process [goid 0009228]; GO_process: RNA modification [goid 0009451]; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis 440773..442221 Escherichia coli K12 945067 NP_414958.4 CDS yajL NC_000913.2 442275 442865 R GO_process: biotin biosynthetic process [goid 0009102]; conserved protein complement(442275..442865) Escherichia coli K12 945066 NP_414959.1 CDS panE NC_000913.2 442828 443739 R 2-dehydropantoate 2-reductase; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; 2-dehydropantoate reductase, NADPH-specific complement(442828..443739) Escherichia coli K12 945065 NP_414960.2 CDS yajQ NC_000913.2 443907 444398 D predicted nucleotide binding protein 443907..444398 Escherichia coli K12 945063 NP_414961.4 CDS yajR NC_000913.2 444526 445890 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted transporter complement(444526..445890) Escherichia coli K12 945058 NP_414962.1 CDS cyoE NC_000913.2 446039 446929 R protoheme IX farnesyltransferase (haeme O biosynthesis); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; protoheme IX farnesyltransferase complement(446039..446929) Escherichia coli K12 945073 NP_414963.1 CDS cyoD NC_000913.2 446941 447270 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit IV complement(446941..447270) Escherichia coli K12 944918 NP_414964.1 CDS cyoC NC_000913.2 447270 447884 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit III complement(447270..447884) Escherichia coli K12 946897 NP_414965.1 CDS cyoB NC_000913.2 447874 449865 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit I complement(447874..449865) Escherichia coli K12 945615 NP_414966.1 CDS cyoA NC_000913.2 449887 450834 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit II complement(449887..450834) Escherichia coli K12 945080 NP_414967.1 CDS ampG NC_000913.2 451294 452769 R regulates beta-lactamase synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan metabolic process [goid 0000270]; muropeptide transporter complement(451294..452769) Escherichia coli K12 946438 NP_414968.4 CDS yajG NC_000913.2 452813 453391 R putative polymerase/proteinase; predicted lipoprotein complement(452813..453391) Escherichia coli K12 945521 NP_414969.4 CDS bolA NC_000913.2 453696 454013 D possible regulator of murein genes; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: response to osmotic stress [goid 0006970]; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) 453696..454013 Escherichia coli K12 947043 NP_414970.1 CDS tig NC_000913.2 454357 455655 D trigger factor; a molecular chaperone involved in cell division; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis/trans isomerase (trigger factor) 454357..455655 Escherichia coli K12 945081 NP_414971.1 CDS clpP NC_000913.2 455901 456524 D ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: response to temperature stimulus [goid 0009266]; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases 455901..456524 Escherichia coli K12 945082 NP_414972.1 CDS clpX NC_000913.2 456650 457924 D ATP-dependent specificity component of clpP serine protease, chaperone; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease 456650..457924 Escherichia coli K12 945083 NP_414973.1 CDS lon NC_000913.2 458112 460466 D DNA-binding, ATP-dependent protease La; heat shock K-protein; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; DNA-binding ATP-dependent protease La 458112..460466 Escherichia coli K12 945085 NP_414974.1 CDS hupB NC_000913.2 460675 460947 D DNA-binding protein HU-beta, NS1 (HU-1); GO_component: cytoplasm [goid 0005737]; HU, DNA-binding transcriptional regulator, beta subunit 460675..460947 Escherichia coli K12 949095 NP_414975.1 CDS ppiD NC_000913.2 461139 463010 D GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase (rotamase D) 461139..463010 Escherichia coli K12 946056 NP_414976.1 CDS ybaV NC_000913.2 463161 463532 D conserved protein 463161..463532 Escherichia coli K12 945884 NP_414977.1 CDS ybaW NC_000913.2 463626 464024 D conserved protein 463626..464024 Escherichia coli K12 945812 NP_414978.1 CDS queC NC_000913.2 464076 464771 R GO_process: xenobiotic metabolic process [goid 0006805]; predicted aluminum resistance protein complement(464076..464771) Escherichia coli K12 947034 NP_414979.1 CDS ybaE NC_000913.2 464836 466536 R GO_component: periplasmic space [goid 0042597]; predicted transporter subunit: periplasmic-binding component of ABC superfamily complement(464836..466536) Escherichia coli K12 949093 NP_414980.2 CDS cof NC_000913.2 466636 467454 D thiamin pyrimidine pyrophosphate hydrolase 466636..467454 Escherichia coli K12 945089 NP_414981.4 CDS ybaO NC_000913.2 467607 468065 D putative LRP-like transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 467607..468065 Escherichia coli K12 945091 NP_414982.1 CDS mdlA NC_000913.2 468095 469867 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components 468095..469867 Escherichia coli K12 945092 NP_414983.1 CDS mdlB NC_000913.2 469860 471641 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components 469860..471641 Escherichia coli K12 945088 NP_414984.1 CDS glnK NC_000913.2 471822 472160 D nitrogen regulatory protein P-II 2; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB 471822..472160 Escherichia coli K12 945087 NP_414985.1 CDS amtB NC_000913.2 472190 473476 D probable ammonium transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; ammonium transporter 472190..473476 Escherichia coli K12 945084 NP_414986.1 CDS tesB NC_000913.2 473525 474385 R acyl-CoA thioesterase II complement(473525..474385) Escherichia coli K12 945074 NP_414987.3 CDS ybaY NC_000913.2 474603 475175 D glycoprotein/polysaccharide metabolism; GO_process: lipoprotein biosynthetic process [goid 0042158]; GO_process: glycoprotein biosynthetic process [goid 0009101]; predicted outer membrane lipoprotein 474603..475175 Escherichia coli K12 945070 NP_414988.1 CDS ybaZ NC_000913.2 475206 475595 R predicted methyltransferase complement(475206..475595) Escherichia coli K12 945094 NP_414989.1 CDS ybaA NC_000913.2 475896 476249 D conserved protein 475896..476249 Escherichia coli K12 948863 NP_414990.2 CDS ylaB NC_000913.2 476291 477841 R conserved inner membrane protein complement(476291..477841) Escherichia coli K12 948951 NP_414991.4 CDS ylaC NC_000913.2 478005 478475 R predicted inner membrane protein complement(478005..478475) Escherichia coli K12 948876 NP_414992.1 CDS maa NC_000913.2 478591 479142 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose O-acetyltransferase complement(478591..479142) Escherichia coli K12 945096 NP_414993.1 CDS hha NC_000913.2 479314 479532 R haemolysin expression modulating protein; GO_process: transcription [goid 0006350]; modulator of gene expression, with H-NS complement(479314..479532) Escherichia coli K12 945098 NP_414994.1 CDS ybaJ NC_000913.2 479558 479932 R predicted protein complement(479558..479932) Escherichia coli K12 945106 NP_414995.1 CDS acrB NC_000913.2 480478 483627 R acridine efflux pump; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein complement(480478..483627) Escherichia coli K12 945108 NP_414996.1 CDS acrA NC_000913.2 483650 484843 R acridine efflux pump; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system complement(483650..484843) Escherichia coli K12 945112 NP_414997.1 CDS acrR NC_000913.2 484985 485632 D acrAB operon repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor 484985..485632 Escherichia coli K12 945516 NP_414998.1 CDS kefA NC_000913.2 485760 489122 D mechanosensitive channel protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused conserved protein 485760..489122 Escherichia coli K12 945132 NP_414999.1 CDS ybaM NC_000913.2 489334 489495 R predicted protein complement(489334..489495) Escherichia coli K12 945144 NP_415000.1 CDS priC NC_000913.2 489509 490036 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; primosomal replication protein N'' complement(489509..490036) Escherichia coli K12 945071 NP_415001.1 CDS ybaN NC_000913.2 490106 490483 D putative gene 58; conserved inner membrane protein 490106..490483 Escherichia coli K12 945558 NP_415002.1 CDS apt NC_000913.2 490636 491187 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; adenine phosphoribosyltransferase 490636..491187 Escherichia coli K12 945113 NP_415003.1 CDS dnaX NC_000913.2 491316 493247 D DNA polymerase III, tau and gamma subunits; DNA elongation factor III; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III/DNA elongation factor III, tau and gamma subunits 491316..493247 Escherichia coli K12 945105 NP_415004.1 CDS ybaB NC_000913.2 493300 493629 D conserved protein 493300..493629 Escherichia coli K12 945104 NP_415005.1 CDS recR NC_000913.2 493629 494234 D recombination and repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; gap repair protein 493629..494234 Escherichia coli K12 945100 NP_415006.1 CDS htpG NC_000913.2 494344 496218 D chaperone Hsp90, heat shock protein C 62.5; GO_process: protein folding [goid 0006457]; molecular chaperone HSP90 family 494344..496218 Escherichia coli K12 945099 NP_415007.1 CDS adk NC_000913.2 496399 497043 D adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; adenylate kinase 496399..497043 Escherichia coli K12 945097 NP_415008.1 CDS hemH NC_000913.2 497279 498241 D ferrochelatase: final enzyme of heme biosynthesis; ferrochelatase 497279..498241 Escherichia coli K12 947532 NP_415009.1 CDS aes NC_000913.2 498238 499197 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; acetyl esterase complement(498238..499197) Escherichia coli K12 947514 NP_415010.1 CDS gsk NC_000913.2 499349 500653 D inosine-guanosine kinase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; inosine/guanosine kinase 499349..500653 Escherichia coli K12 946584 NP_415011.1 CDS ybaL NC_000913.2 500786 502462 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter with NAD(P)-binding Rossmann-fold domain complement(500786..502462) Escherichia coli K12 946576 NP_415012.1 CDS fsr NC_000913.2 502700 503920 R fosmidomycin resistance protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted fosmidomycin efflux system complement(502700..503920) Escherichia coli K12 945119 NP_415013.1 CDS ushA NC_000913.2 504138 505790 D UDP-sugar hydrolase (5'-nucleotidase); GO_component: cytoplasm [goid 0005737]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; bifunctional UDP-sugar hydrolase/5'-nucleotidase 504138..505790 Escherichia coli K12 947331 NP_415014.1 CDS ybaK NC_000913.2 505827 506306 R conserved protein complement(505827..506306) Escherichia coli K12 947083 NP_415015.1 CDS ybaP NC_000913.2 506510 507304 R putative ligase; conserved protein complement(506510..507304) Escherichia coli K12 945124 NP_415016.4 CDS ybaQ NC_000913.2 507442 507783 D predicted DNA-binding transcriptional regulator 507442..507783 Escherichia coli K12 948800 NP_415017.1 CDS copA NC_000913.2 508099 510603 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; copper transporter complement(508099..510603) Escherichia coli K12 946106 NP_415018.1 CDS ybaS NC_000913.2 510865 511797 D putative glutaminase; GO_process: amino acid catabolic process [goid 0009063]; predicted glutaminase 510865..511797 Escherichia coli K12 946187 NP_415019.1 CDS ybaT NC_000913.2 511800 513092 D putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; predicted transporter 511800..513092 Escherichia coli K12 945363 NP_415020.1 CDS cueR NC_000913.2 513217 513624 D GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of copper-responsive regulon genes 513217..513624 Escherichia coli K12 945332 NP_415021.2 CDS ybbJ NC_000913.2 513625 514083 R conserved inner membrane protein complement(513625..514083) Escherichia coli K12 945126 NP_415022.1 CDS qmcA NC_000913.2 514080 514997 R putative protease; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted protease, membrane anchored complement(514080..514997) Escherichia coli K12 947257 NP_415023.1 CDS ybbL NC_000913.2 515143 515820 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 515143..515820 Escherichia coli K12 946990 NP_415024.4 CDS ybbM NC_000913.2 515807 516586 D putative metal resistance protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted inner membrane protein 515807..516586 Escherichia coli K12 945137 NP_415025.4 CDS ybbN NC_000913.2 516649 517503 R putative thioredoxin-like protein; predicted thioredoxin domain-containing protein complement(516649..517503) Escherichia coli K12 947119 NP_415026.1 CDS ybbO NC_000913.2 517564 518373 R putative oxidoreductase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(517564..518373) Escherichia coli K12 945337 NP_415027.1 CDS tesA NC_000913.2 518363 518989 R acyl-CoA thioesterase I; also functions as protease I; GO_component: periplasmic space [goid 0042597]; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 complement(518363..518989) Escherichia coli K12 945127 NP_415028.1 CDS ybbA NC_000913.2 518957 519643 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 518957..519643 Escherichia coli K12 945122 NP_415029.1 CDS ybbP NC_000913.2 519640 522054 D putative oxidoreductase; predicted inner membrane protein 519640..522054 Escherichia coli K12 945118 NP_415030.1 CDS rhsD NC_000913.2 522485 526765 D rhsD protein in rhs element; rhsD element protein 522485..526765 Escherichia coli K12 945116 NP_415031.1 CDS ybbC NC_000913.2 526805 527173 D predicted protein 526805..527173 Escherichia coli K12 945115 b0499 CDS ylbH NC_000913.2 527176 527883 D pseudogene, rhs-like; 527176..527883 Escherichia coli K12 945114 b0500 CDS ybbD NC_000913.2 527864 528354 D predicted protein; 527864..528354 Escherichia coli K12 945133 b4632 CDS ylbI NC_000913.2 528721 528816 D pseudogene, Rhs family; 528721..528816 Escherichia coli K12 5625558 b0502 CDS ylbG NC_000913.2 528819 529240 R predicted DNA-binding transcriptional regulator; complement(join(528819..528884,528884..529240)) Escherichia coli K12 946803 NP_415036.1 CDS ybbB NC_000913.2 529356 530450 R putative capsule anchoring protein; tRNA 2-selenouridine synthase, selenophosphate-dependent complement(529356..530450) Escherichia coli K12 947063 NP_415037.1 CDS allS NC_000913.2 530519 531445 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of the allD operon complement(530519..531445) Escherichia coli K12 945139 NP_415038.1 CDS allA NC_000913.2 531675 532157 D GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; ureidoglycolate hydrolase 531675..532157 Escherichia coli K12 945141 NP_415039.1 CDS allR NC_000913.2 532235 533050 D GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 532235..533050 Escherichia coli K12 945333 NP_415040.1 CDS gcl NC_000913.2 533140 534921 D GO_process: glycolate metabolic process [goid 0009441]; GO_process: allantoin assimilation pathway [goid 0009442]; glyoxylate carboligase 533140..534921 Escherichia coli K12 945394 NP_415041.1 CDS hyi NC_000913.2 534934 535710 D GO_component: cytoplasm [goid 0005737]; hydroxypyruvate isomerase 534934..535710 Escherichia coli K12 946186 NP_415042.1 CDS glxR NC_000913.2 535810 536688 D GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; GO_process: allantoin assimilation pathway [goid 0009442]; tartronate semialdehyde reductase, NADH-dependent 535810..536688 Escherichia coli K12 945146 NP_415044.4 CDS ybbW NC_000913.2 536857 538311 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted allantoin transporter 536857..538311 Escherichia coli K12 945138 NP_415045.1 CDS allB NC_000913.2 538371 539732 D GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; allantoinase 538371..539732 Escherichia coli K12 945134 NP_415046.4 CDS ybbY NC_000913.2 539789 541090 D predicted uracil/xanthine transporter 539789..541090 Escherichia coli K12 945131 NP_415047.1 CDS glxK NC_000913.2 541112 542257 D GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; GO_process: allantoin assimilation pathway [goid 0009442]; glycerate kinase II 541112..542257 Escherichia coli K12 945129 NP_415048.1 CDS ylbA NC_000913.2 542485 543270 R conserved protein complement(542485..543270) Escherichia coli K12 945149 NP_415049.1 CDS allC NC_000913.2 543281 544516 R GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; allantoate amidohydrolase complement(543281..544516) Escherichia coli K12 945150 NP_415050.1 CDS allD NC_000913.2 544538 545587 R GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; ureidoglycolate dehydrogenase complement(544538..545587) Escherichia coli K12 948342 NP_415051.1 CDS fdrA NC_000913.2 545904 547571 D involved in protein transport; multicopy suppressor of dominant negative ftsH mutants; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain 545904..547571 Escherichia coli K12 946298 b4572 CDS ylbE NC_000913.2 547581 548839 D predicted protein, C-ter fragment (pseudogene); join(547581..547832,547832..548839) Escherichia coli K12 4056025 NP_415053.1 CDS ylbF NC_000913.2 548850 549665 D putative carboxylase; conserved protein 548850..549665 Escherichia coli K12 945195 NP_415054.1 CDS ybcF NC_000913.2 549662 550555 D putative carbamate kinase; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; predicted carbamate kinase 549662..550555 Escherichia coli K12 944972 NP_415055.1 CDS purK NC_000913.2 550750 551817 R phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; N5-carboxyaminoimidazole ribonucleotide synthase complement(550750..551817) Escherichia coli K12 945153 NP_415056.1 CDS purE NC_000913.2 551814 552323 R phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; N5-carboxyaminoimidazole ribonucleotide mutase complement(551814..552323) Escherichia coli K12 949031 NP_415057.1 CDS lpxH NC_000913.2 552441 553163 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-2,3-diacylglucosamine pyrophosphatase complement(552441..553163) Escherichia coli K12 949053 NP_415058.1 CDS ppiB NC_000913.2 553166 553660 R GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase B (rotamase B) complement(553166..553660) Escherichia coli K12 949038 NP_415059.1 CDS cysS NC_000913.2 553834 555219 D cysteine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; cysteinyl-tRNA synthetase 553834..555219 Escherichia coli K12 946969 NP_415060.1 CDS ybcI NC_000913.2 555255 555776 R conserved inner membrane protein complement(555255..555776) Escherichia coli K12 945155 NP_415061.2 CDS ybcJ NC_000913.2 555884 556096 R predicted RNA-binding protein complement(555884..556096) Escherichia coli K12 945158 NP_415062.1 CDS folD NC_000913.2 556098 556964 R 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase; GO_process: folic acid biosynthetic process [goid 0046656]; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(556098..556964) Escherichia coli K12 945221 NP_415063.4 CDS sfmA NC_000913.2 557435 557977 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 557435..557977 Escherichia coli K12 945522 NP_415064.1 CDS sfmC NC_000913.2 558197 558889 D putative chaperone; GO_process: protein folding [goid 0006457]; pilin chaperone, periplasmic 558197..558889 Escherichia coli K12 945367 NP_415065.1 CDS sfmD NC_000913.2 558920 561523 D putative outer membrane protein, export function; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane export usher protein 558920..561523 Escherichia coli K12 945160 NP_415066.2 CDS sfmH NC_000913.2 561559 562542 D involved in fimbrial asembly; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; predicted fimbrial-like adhesin protein 561559..562542 Escherichia coli K12 945407 NP_415067.1 CDS sfmF NC_000913.2 562553 563068 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 562553..563068 Escherichia coli K12 944977 NP_415068.1 CDS fimZ NC_000913.2 563071 563703 R fimbrial Z protein; probable signal transducer; GO_component: fimbrium [goid 0009289]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(563071..563703) Escherichia coli K12 947079 NP_415069.1 CDS intD NC_000913.2 564038 565201 R prophage DLP12 integrase; DLP12 prophage; predicted integrase complement(564038..565201) Escherichia coli K12 947162 b4633 CDS xisD NC_000913.2 565081 565302 R pseudogene, exisionase in defective prophage DLP12; complement(565081..565302) Escherichia coli K12 5625559 b0539 CDS ybcC NC_000913.2 565321 565599 R pseudogene, DLP12 prophage; predicted exonuclease; complement(565321..565599) Escherichia coli K12 947902 b4508 CDS ybcD NC_000913.2 565602 565907 D DLP12 prophage; predicted replication protein fragment (pseudogene); GO_component: cytoplasm [goid 0005737]; 565602..565907 Escherichia coli K12 945299 b0542 CDS renD NC_000913.2 565907 567470 D DLP12 prophage; predicted protein; join(565907..565999,567258..567470) Escherichia coli K12 945024 NP_415072.1 CDS insE NC_000913.2 566056 566364 D IS3 element protein InsE 566056..566364 Escherichia coli K12 945759 NP_415073.1 CDS insF NC_000913.2 566361 567227 D IS3 element protein InsF 566361..567227 Escherichia coli K12 947988 NP_415075.1 CDS emrE NC_000913.2 567538 567870 D methylviologen resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; DLP12 prophage; multidrug resistance protein 567538..567870 Escherichia coli K12 948442 NP_415076.1 CDS ybcK NC_000913.2 568125 569651 D DLP12 prophage; predicted recombinase 568125..569651 Escherichia coli K12 945166 NP_415077.1 CDS ybcL NC_000913.2 570116 570667 D DLP12 prophage; predicted kinase inhibitor 570116..570667 Escherichia coli K12 945165 NP_415078.1 CDS ybcM NC_000913.2 570677 571474 D putative ARAC-type regulatory protein; DLP12 prophage; predicted DNA-binding transcriptional regulator 570677..571474 Escherichia coli K12 945163 YP_001165308.1 CDS ylcH NC_000913.2 571591 571692 D hypothetical protein, DLP12 prophage 571591..571692 Escherichia coli K12 5061504 NP_415079.1 CDS ybcN NC_000913.2 571689 572144 D DLP12 prophage; predicted protein 571689..572144 Escherichia coli K12 945162 NP_415080.1 CDS ninE NC_000913.2 572144 572314 D similar to phage 82 and lambda proteins; DLP12 prophage; conserved protein 572144..572314 Escherichia coli K12 945151 NP_415081.1 CDS ybcO NC_000913.2 572307 572597 D DLP12 prophage; predicted protein 572307..572597 Escherichia coli K12 945147 NP_415082.1 CDS rusA NC_000913.2 572594 572956 D endodeoxyribonuclease RUS (Holliday junction resolvase); GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; DLP12 prophage; endonuclease RUS 572594..572956 Escherichia coli K12 945174 YP_588439.1 CDS ylcG NC_000913.2 572953 573093 D GO_component: cytoplasm [goid 0005737]; DLP12 prophage; predicted protein 572953..573093 Escherichia coli K12 1450240 NP_415083.1 CDS ybcQ NC_000913.2 573179 573562 D DLP12 prophage; predicted antitermination protein 573179..573562 Escherichia coli K12 945177 b0553 CDS nmpC NC_000913.2 573752 576048 R DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage-related functions and prophages outer membrane porin protein; locus of qsr prophage; complement(join(573752..573809,575009..576048)) Escherichia coli K12 946786 NP_415084.1 CDS insH NC_000913.2 573960 574976 R IS5 transposase and trans-activator complement(573960..574976) Escherichia coli K12 946163 NP_415086.1 CDS essD NC_000913.2 576621 576836 D DLP12 prophage; predicted phage lysis protein 576621..576836 Escherichia coli K12 947545 NP_415087.1 CDS ybcS NC_000913.2 576836 577333 D bacteriophage lambda lysozyme homolog; DLP12 prophage; predicted lysozyme 576836..577333 Escherichia coli K12 947539 NP_415088.1 CDS rzpD NC_000913.2 577330 577791 D bacteriophage lambda endopeptidase homolog; DLP12 prophage; predicted murein endopeptidase 577330..577791 Escherichia coli K12 945929 YP_588440.1 CDS rzoD NC_000913.2 577550 577732 D GO_component: cell outer membrane [goid 0009279]; DLP12 prophage; predicted lipoprotein 577550..577732 Escherichia coli K12 1450242 NP_415089.1 CDS borD NC_000913.2 577823 578116 R bacteriophage lambda Bor protein homolog; DLP12 prophage; predicted lipoprotein complement(577823..578116) Escherichia coli K12 948980 NP_415090.2 CDS ybcV NC_000913.2 578407 578817 R putative an envelop protein; DLP12 prophage; predicted protein complement(578407..578817) Escherichia coli K12 945178 NP_415091.1 CDS ybcW NC_000913.2 579103 579309 D DLP12 prophage; predicted protein 579103..579309 Escherichia coli K12 945175 YP_001165309.1 CDS ylcI NC_000913.2 579474 579668 R hypothetical protein complement(579474..579668) Escherichia coli K12 5061499 NP_415092.1 CDS nohB NC_000913.2 580057 580602 D bacteriophage DNA packaging protein; DLP12 prophage; DNA packaging protein 580057..580602 Escherichia coli K12 945172 b4634 CDS ylcF NC_000913.2 580577 580885 D DLP12 prophage; predicted tail fiber assembly protein (pseudogene); 580577..580885 Escherichia coli K12 5625560 b0561 CDS tfaD NC_000913.2 580883 581320 D pseudogene, DLP12 prophage; predicted tail fiber assembly protein; 580883..581320 Escherichia coli K12 945171 b0562 CDS ybcY NC_000913.2 581375 582029 R DLP12 prophage; predicted SAM-dependent methyltransferase; complement(581375..582029) Escherichia coli K12 945170 b0563 CDS tfaX NC_000913.2 582176 582358 D pseudogene, DLP12 prophage; 582176..582358 Escherichia coli K12 945183 NP_415096.1 CDS appY NC_000913.2 582904 583653 D regulatory protein affecting appA and other genes; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to starvation [goid 0042594]; DLP12 prophage; DNA-binding transcriptional activator 582904..583653 Escherichia coli K12 948797 NP_415097.1 CDS ompT NC_000913.2 583903 584856 R outer membrane protein 3b (a), protease VII; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) complement(583903..584856) Escherichia coli K12 945185 NP_415098.1 CDS envY NC_000913.2 585370 586131 R envelope protein; thermoregulation of porin biosynthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of porin biosynthesis complement(585370..586131) Escherichia coli K12 949114 NP_415099.1 CDS ybcH NC_000913.2 586314 587204 R predicted protein complement(586314..587204) Escherichia coli K12 945186 NP_415100.1 CDS nfrA NC_000913.2 587205 590177 R bacteriophage N4 receptor, outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; bacteriophage N4 receptor, outer membrane subunit complement(587205..590177) Escherichia coli K12 944741 NP_415101.1 CDS nfrB NC_000913.2 590164 592401 R bacteriophage N4 receptor, subunit, inner membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; bacteriophage N4 receptor, inner membrane subunit complement(590164..592401) Escherichia coli K12 945849 NP_415102.1 CDS cusS NC_000913.2 592551 593993 R GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions complement(592551..593993) Escherichia coli K12 945978 NP_415103.1 CDS cusR NC_000913.2 593983 594666 R GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with CusS complement(593983..594666) Escherichia coli K12 945003 NP_415104.1 CDS cusC NC_000913.2 594823 596196 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; copper/silver efflux system, outer membrane component 594823..596196 Escherichia coli K12 946288 NP_415105.1 CDS cusF NC_000913.2 596354 596686 D periplasmic copper-binding protein 596354..596686 Escherichia coli K12 945188 NP_415106.1 CDS cusB NC_000913.2 596702 597925 D GO_process: response to drug [goid 0042493]; copper/silver efflux system, membrane fusion protein 596702..597925 Escherichia coli K12 945189 NP_415107.1 CDS cusA NC_000913.2 597937 601080 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; copper/silver efflux system, membrane component 597937..601080 Escherichia coli K12 945191 NP_415108.1 CDS pheP NC_000913.2 601182 602558 D phenylalanine-specific transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: amino acid catabolic process [goid 0009063]; phenylalanine transporter 601182..602558 Escherichia coli K12 945199 NP_415109.1 CDS ybdG NC_000913.2 602639 603886 R putative transport; GO_component: periplasmic space [goid 0042597]; predicted mechanosensitive channel complement(602639..603886) Escherichia coli K12 946243 NP_415110.1 CDS nfsB NC_000913.2 603994 604647 R oxygen-insensitive NAD(P)H nitroreductase; GO_process: response to drug [goid 0042493]; dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive complement(603994..604647) Escherichia coli K12 945778 NP_415111.1 CDS ybdF NC_000913.2 604741 605109 R conserved protein complement(604741..605109) Escherichia coli K12 948302 NP_415112.1 CDS ybdJ NC_000913.2 605174 605422 R predicted inner membrane protein complement(605174..605422) Escherichia coli K12 947183 NP_415113.1 CDS ybdK NC_000913.2 605488 606606 R gamma-glutamyl:cysteine ligase complement(605488..606606) Escherichia coli K12 947246 YP_025295.1 CDS hokE NC_000913.2 607059 607211 D small toxic membrane polypeptide the corresponding mokE lacks a start codon, and the regulatory RNA sokE has not been identified; toxic polypeptide, small 607059..607211 Escherichia coli K12 2847715 NP_415114.1 CDS insL NC_000913.2 607288 608400 D IS186/IS421 transposase 607288..608400 Escherichia coli K12 945200 NP_415115.1 CDS entD NC_000913.2 608682 609311 R enterochelin synthetase, component D; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: enterobactin biosynthetic process [goid 0009239]; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex complement(608682..609311) Escherichia coli K12 945194 NP_415116.1 CDS fepA NC_000913.2 609477 611717 R outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin outer membrane transporter complement(609477..611717) Escherichia coli K12 945193 NP_415117.1 CDS fes NC_000913.2 612038 613162 D enterochelin esterase; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; enterobactin/ferric enterobactin esterase 612038..613162 Escherichia coli K12 945181 YP_588441.1 CDS ybdZ NC_000913.2 613165 613383 D GO_component: cytoplasm [goid 0005737]; conserved protein 613165..613383 Escherichia coli K12 1450243 NP_415118.1 CDS entF NC_000913.2 613380 617261 D ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F); GO_component: cytoplasm [goid 0005737]; GO_process: enterobactin biosynthetic process [goid 0009239]; GO_process: coenzyme A biosynthetic process [goid 0015937]; GO_process: nonribosomal peptide biosynthetic process [goid 0019184]; GO_process: iron ion transport [goid 0006826]; enterobactin synthase multienzyme complex component, ATP-dependent 613380..617261 Escherichia coli K12 945184 NP_415119.1 CDS fepE NC_000913.2 617477 618610 D ferric enterobactin (enterochelin) transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; regulator of length of O-antigen component of lipopolysaccharide chains 617477..618610 Escherichia coli K12 945180 NP_415120.1 CDS fepC NC_000913.2 618607 619422 R ATP-binding component of ferric enterobactin transport; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit complement(618607..619422) Escherichia coli K12 945201 NP_415121.1 CDS fepG NC_000913.2 619419 620411 R ferric enterobactin transport protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit complement(619419..620411) Escherichia coli K12 945209 NP_415122.1 CDS fepD NC_000913.2 620408 621412 R ferric enterobactin (enterochelin) transport; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit complement(620408..621412) Escherichia coli K12 945214 NP_415123.1 CDS entS NC_000913.2 621523 622773 D putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 621523..622773 Escherichia coli K12 946268 NP_415124.1 CDS fepB NC_000913.2 622777 623733 R ferric enterobactin (enterochelin) binding protein; periplasmic component; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit complement(622777..623733) Escherichia coli K12 947538 NP_415125.1 CDS entC NC_000913.2 624108 625283 D isochorismate hydroxymutase 2, enterochelin biosynthesis; GO_process: enterobactin biosynthetic process [goid 0009239]; isochorismate synthase 1 624108..625283 Escherichia coli K12 945511 NP_415126.1 CDS entE NC_000913.2 625293 626903 D 2,3-dihydroxybenzoate-AMP ligase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: enterobactin biosynthetic process [goid 0009239]; GO_process: nonribosomal peptide biosynthetic process [goid 0019184]; 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex 625293..626903 Escherichia coli K12 947426 NP_415127.1 CDS entB NC_000913.2 626917 627774 D 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; GO_component: cytoplasm [goid 0005737]; GO_process: enterobactin biosynthetic process [goid 0009239]; GO_process: nonribosomal peptide biosynthetic process [goid 0019184]; isochorismatase 626917..627774 Escherichia coli K12 946178 NP_415128.1 CDS entA NC_000913.2 627774 628520 D 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis; GO_process: enterobactin biosynthetic process [goid 0009239]; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 627774..628520 Escherichia coli K12 945284 NP_415129.1 CDS ybdB NC_000913.2 628523 628936 D conserved protein 628523..628936 Escherichia coli K12 945215 NP_415130.1 CDS cstA NC_000913.2 629117 631222 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to starvation [goid 0042594]; carbon starvation protein 629117..631222 Escherichia coli K12 945213 YP_588442.1 CDS ybdD NC_000913.2 631405 631602 D GO_component: cytoplasm [goid 0005737]; conserved protein 631405..631602 Escherichia coli K12 949021 NP_415132.1 CDS ybdH NC_000913.2 631612 632700 R putative oxidoreductase; predicted oxidoreductase complement(631612..632700) Escherichia coli K12 945212 NP_415133.1 CDS ybdL NC_000913.2 632809 633969 D PLP-dependent methionine aminotransferase; GO_process: metabolic process [goid 0008152]; methionine aminotransferase, PLP-dependent 632809..633969 Escherichia coli K12 945211 NP_415134.1 CDS ybdM NC_000913.2 633970 634599 R conserved protein complement(633970..634599) Escherichia coli K12 945206 NP_415135.1 CDS ybdN NC_000913.2 634572 635792 R conserved protein complement(634572..635792) Escherichia coli K12 945205 NP_415136.1 CDS ybdO NC_000913.2 635939 636841 R putative transcriptional regulator LYSR-type; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(635939..636841) Escherichia coli K12 945216 NP_415137.2 CDS dsbG NC_000913.2 637050 637796 R thiol:disulfide interchange protein; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; periplasmic disulfide isomerase/thiol-disulphide oxidase complement(637050..637796) Escherichia coli K12 945224 NP_415138.1 CDS ahpC NC_000913.2 638168 638731 D alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides; GO_process: xenobiotic metabolic process [goid 0006805]; alkyl hydroperoxide reductase, C22 subunit 638168..638731 Escherichia coli K12 945225 NP_415139.2 CDS ahpF NC_000913.2 638976 640541 D alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides; GO_process: xenobiotic metabolic process [goid 0006805]; alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding 638976..640541 Escherichia coli K12 947540 NP_415140.1 CDS uspG NC_000913.2 640662 641090 R universal stress protein UP12 complement(640662..641090) Escherichia coli K12 945229 NP_415141.1 CDS ybdR NC_000913.2 641311 642549 D putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 641311..642549 Escherichia coli K12 949067 NP_415143.1 CDS rnk NC_000913.2 642780 643190 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; regulator of nucleoside diphosphate kinase complement(642780..643190) Escherichia coli K12 947546 NP_415144.1 CDS rna NC_000913.2 643420 644226 R RNase I, cleaves phosphodiester bond between any two nucleotides; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; ribonuclease I complement(643420..644226) Escherichia coli K12 949065 NP_415145.1 CDS citT NC_000913.2 644340 645803 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; citrate:succinate antiporter complement(644340..645803) Escherichia coli K12 949070 NP_415146.1 CDS citG NC_000913.2 645854 646732 R GO_process: translation [goid 0006412]; triphosphoribosyl-dephospho-CoA transferase complement(645854..646732) Escherichia coli K12 946395 NP_415147.1 CDS citX NC_000913.2 646707 647258 R GO_process: protein modification [goid 0006464]; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase complement(646707..647258) Escherichia coli K12 949084 NP_415148.1 CDS citF NC_000913.2 647262 648794 R citrate lyase alpha chain; GO_component: cytoplasm [goid 0005737]; citrate lyase, citrate-ACP transferase (alpha) subunit complement(647262..648794) Escherichia coli K12 945230 NP_415149.4 CDS citE NC_000913.2 648805 649713 R GO_component: cytoplasm [goid 0005737]; citrate lyase, citryl-ACP lyase (beta) subunit complement(648805..649713) Escherichia coli K12 945406 NP_415150.1 CDS citD NC_000913.2 649710 650006 R citrate lyase acyl carrier protein (gamma chain); GO_component: cytoplasm [goid 0005737]; GO_process: acyl-carrier-protein biosynthetic process [goid 0042967]; citrate lyase, acyl carrier (gamma) subunit complement(649710..650006) Escherichia coli K12 945415 NP_415151.4 CDS citC NC_000913.2 650021 651079 R citrate lyase synthetase (citrate (pro-3S)-lyase ligase; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; citrate lyase synthetase complement(650021..651079) Escherichia coli K12 945231 NP_415152.1 CDS dpiB NC_000913.2 651458 653116 D putative sensor-type protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with citB 651458..653116 Escherichia coli K12 945233 NP_415153.1 CDS dpiA NC_000913.2 653085 653765 D sequence similarity to Shigella regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with citA 653085..653765 Escherichia coli K12 947008 NP_415154.1 CDS dcuC NC_000913.2 653806 655191 R transport of dicarboxylates; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; anaerobic C4-dicarboxylate transport complement(653806..655191) Escherichia coli K12 945000 NP_415155.1 CDS pagP NC_000913.2 655780 656340 D palmitoyl transferase for Lipid A 655780..656340 Escherichia coli K12 946360 NP_415156.1 CDS cspE NC_000913.2 656515 656724 D cold shock protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; DNA-binding transcriptional repressor 656515..656724 Escherichia coli K12 947024 NP_415157.1 CDS crcB NC_000913.2 656778 657161 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein associated with chromosome condensation complement(656778..657161) Escherichia coli K12 945798 b4581 CDS ybeM NC_000913.2 657254 658041 D predicted C-N hydrolase superfamily, NAD(P)-binding amidase/nitrilase;putative enzyme; Not classified putative amidase; join(657254..657448,657448..658041) Escherichia coli K12 4056041 NP_415160.1 CDS tatE NC_000913.2 658170 658373 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; TatABCE protein translocation system subunit 658170..658373 Escherichia coli K12 945228 NP_415161.1 CDS lipA NC_000913.2 658474 659439 R lipoate synthesis, sulfur insertion?; GO_component: cytoplasm [goid 0005737]; GO_process: lipoate biosynthetic process [goid 0009107]; lipoate synthase complement(658474..659439) Escherichia coli K12 945227 NP_415162.4 CDS ybeF NC_000913.2 659648 660601 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(659648..660601) Escherichia coli K12 945219 NP_415163.2 CDS lipB NC_000913.2 660860 661501 R protein of lipoate biosynthesis; GO_process: lipoate biosynthetic process [goid 0009107]; lipoyl-protein ligase complement(660860..661501) Escherichia coli K12 945217 NP_415164.1 CDS ybeD NC_000913.2 661602 661865 R conserved protein complement(661602..661865) Escherichia coli K12 945220 NP_415165.1 CDS dacA NC_000913.2 661975 663186 R D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) complement(661975..663186) Escherichia coli K12 945222 NP_415166.1 CDS rlpA NC_000913.2 663325 664413 R a minor lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; minor lipoprotein complement(663325..664413) Escherichia coli K12 945241 NP_415167.1 CDS mrdB NC_000913.2 664424 665536 R rod shape-determining membrane protein; sensitivity to radiation and drugs; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cell wall shape-determining protein complement(664424..665536) Escherichia coli K12 945238 NP_415168.1 CDS mrdA NC_000913.2 665539 667440 R cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) complement(665539..667440) Escherichia coli K12 945240 NP_415169.1 CDS ybeA NC_000913.2 667471 667938 R conserved protein complement(667471..667938) Escherichia coli K12 945239 NP_415170.4 CDS ybeB NC_000913.2 667942 668259 R predicted protein complement(667942..668259) Escherichia coli K12 945237 NP_415171.1 CDS cobC NC_000913.2 668519 669130 R homolog of Salmonella cobC, a phosphohistidine protein; predicted alpha-ribazole-5'-P phosphatase complement(668519..669130) Escherichia coli K12 945246 NP_415172.1 CDS nadD NC_000913.2 669154 669795 R GO_process: NAD biosynthetic process [goid 0009435]; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent complement(669154..669795) Escherichia coli K12 945248 NP_415173.1 CDS holA NC_000913.2 669797 670828 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, delta subunit complement(669797..670828) Escherichia coli K12 947573 NP_415174.1 CDS rlpB NC_000913.2 670828 671409 R a minor lipoprotein; GO_component: organelle inner membrane [goid 0019866]; GO_process: lipoprotein biosynthetic process [goid 0042158]; minor lipoprotein complement(670828..671409) Escherichia coli K12 946257 NP_415175.1 CDS leuS NC_000913.2 671424 674006 R leucine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; leucyl-tRNA synthetase complement(671424..674006) Escherichia coli K12 947497 NP_415176.1 CDS ybeL NC_000913.2 674241 674723 D putative alpha helical protein; conserved protein 674241..674723 Escherichia coli K12 945252 NP_415177.4 CDS ybeQ NC_000913.2 674793 675770 R conserved protein complement(674793..675770) Escherichia coli K12 945251 NP_415178.1 CDS ybeR NC_000913.2 675934 676641 D predicted protein 675934..676641 Escherichia coli K12 945249 NP_415179.1 CDS djlB NC_000913.2 676638 678065 D putative enzyme of polynucleotide modification; GO_process: protein folding [goid 0006457]; predicted chaperone 676638..678065 Escherichia coli K12 945245 NP_415180.1 CDS ybeT NC_000913.2 678075 678629 R conserved outer membrane protein complement(678075..678629) Escherichia coli K12 945243 NP_415181.1 CDS ybeU NC_000913.2 678731 679438 D putative tRNA ligase; predicted tRNA ligase 678731..679438 Escherichia coli K12 945244 NP_415182.1 CDS djlC NC_000913.2 679435 680886 D Hsc56 co-chaperone of HscC 679435..680886 Escherichia coli K12 945253 NP_415183.1 CDS hscC NC_000913.2 680946 682616 R GO_process: protein folding [goid 0006457]; Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription complement(680946..682616) Escherichia coli K12 945218 NP_415184.1 CDS rihA NC_000913.2 682700 683635 R GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; ribonucleoside hydrolase 1 complement(682700..683635) Escherichia coli K12 945503 NP_415185.1 CDS gltL NC_000913.2 683753 684478 R ATP-binding protein of glutamate/aspartate transport system; GO_component: cytoplasm [goid 0005737]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate and aspartate transporter subunit complement(683753..684478) Escherichia coli K12 945254 NP_415186.1 CDS gltK NC_000913.2 684478 685152 R glutamate/aspartate transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate and aspartate transporter subunit complement(684478..685152) Escherichia coli K12 947354 NP_415187.1 CDS gltJ NC_000913.2 685152 685892 R glutamate/aspartate transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate and aspartate transporter subunit complement(685152..685892) Escherichia coli K12 945443 NP_415188.1 CDS gltI NC_000913.2 686062 686970 R periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: glutamate biosynthetic process [goid 0006537]; glutamate and aspartate transporter subunit complement(686062..686970) Escherichia coli K12 946938 NP_415189.1 CDS insH NC_000913.2 687220 688236 R IS5 transposase and trans-activator complement(687220..688236) Escherichia coli K12 944917 NP_415190.1 CDS lnt NC_000913.2 688566 690104 R apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lipoprotein biosynthetic process [goid 0042158]; apolipoprotein N-acyltransferase complement(688566..690104) Escherichia coli K12 946201 NP_415191.1 CDS ybeX NC_000913.2 690129 691007 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicteed ion transport complement(690129..691007) Escherichia coli K12 946417 NP_415192.1 CDS ybeY NC_000913.2 691097 691564 R conserved protein complement(691097..691564) Escherichia coli K12 946430 NP_415193.2 CDS ybeZ NC_000913.2 691561 692601 R putative ATP-binding protein in pho regulon; predicted protein with nucleoside triphosphate hydrolase domain complement(691561..692601) Escherichia coli K12 948044 NP_415194.1 CDS miaB NC_000913.2 692754 694178 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; isopentenyl-adenosine A37 tRNA methylthiolase complement(692754..694178) Escherichia coli K12 945260 NP_415195.1 CDS ubiF NC_000913.2 694324 695499 D 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase 694324..695499 Escherichia coli K12 945261 NP_415200.1 CDS asnB NC_000913.2 696736 698400 R GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: asparagine biosynthetic process [goid 0006529]; asparagine synthetase B complement(696736..698400) Escherichia coli K12 945281 NP_415201.1 CDS nagD NC_000913.2 698797 699549 R N-acetylglucosamine metabolism; GO_process: amino sugar biosynthetic process [goid 0046349]; UMP phosphatase complement(698797..699549) Escherichia coli K12 945283 NP_415202.1 CDS nagC NC_000913.2 699597 700817 R transcriptional repressor of nag (N-acetylglucosamine) operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino sugar biosynthetic process [goid 0046349]; GO_process: transcription [goid 0006350]; GO_process: translational attenuation [goid 0009386]; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine complement(699597..700817) Escherichia coli K12 945285 NP_415203.1 CDS nagA NC_000913.2 700826 701974 R GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylglucosamine-6-phosphate deacetylase complement(700826..701974) Escherichia coli K12 945289 NP_415204.1 CDS nagB NC_000913.2 702034 702834 R GO_process: amino sugar biosynthetic process [goid 0046349]; glucosamine-6-phosphate deaminase complement(702034..702834) Escherichia coli K12 945290 NP_415205.1 CDS nagE NC_000913.2 703167 705113 D PTS system, N-acetylglucosamine-specific enzyme IIABC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amine catabolic process [goid 0009310]; GO_process: amino sugar biosynthetic process [goid 0046349]; fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components 703167..705113 Escherichia coli K12 945292 NP_415206.1 CDS glnS NC_000913.2 705316 706980 D glutamine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glutamyl-tRNA synthetase 705316..706980 Escherichia coli K12 945310 NP_415207.1 CDS ybfM NC_000913.2 707557 708963 D predicted outer membrane porin 707557..708963 Escherichia coli K12 945296 NP_415208.1 CDS ybfN NC_000913.2 709013 709339 D predicted lipoprotein 709013..709339 Escherichia coli K12 945713 NP_415209.1 CDS fur NC_000913.2 709423 709869 R negative regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport complement(709423..709869) Escherichia coli K12 945295 YP_001491546.1 CDS uof NC_000913.2 709862 709948 R ryhB-regulated fur leader peptide complement(709862..709948) Escherichia coli K12 5625562 NP_415210.1 CDS fldA NC_000913.2 710158 710688 R GO_function: electron donor activity [goid 0009053]; flavodoxin 1 complement(710158..710688) Escherichia coli K12 945293 NP_415211.2 CDS ybfE NC_000913.2 710828 711121 R GO_process: SOS response [goid 0009432]; lexA-regulated predicted protein complement(710828..711121) Escherichia coli K12 945291 NP_415212.1 CDS ybfF NC_000913.2 711261 712025 R conserved protein complement(711261..712025) Escherichia coli K12 945288 NP_415213.1 CDS seqA NC_000913.2 712210 712755 D negative modulator of initiation of replication; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: DNA-dependent DNA replication [goid 0006261]; regulatory protein for replication initiation 712210..712755 Escherichia coli K12 945272 NP_415214.1 CDS pgm NC_000913.2 712781 714421 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glucose metabolic process [goid 0006006]; phosphoglucomutase 712781..714421 Escherichia coli K12 945271 NP_415215.1 CDS ybfP NC_000913.2 714635 715129 D putative pectinase; predicted protein 714635..715129 Escherichia coli K12 945274 b0691 CDS ybfG NC_000913.2 715170 715820 R predicted protein; complement(715170..715820) Escherichia coli K12 945287 b4636 CDS ybfI NC_000913.2 715944 716093 R pseudogene; complement(715944..716093) Escherichia coli K12 5625563 NP_415219.1 CDS potE NC_000913.2 716169 717488 R putrescine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: putrescine:ornithine antiporter activity [goid 0015496]; GO_process: amine catabolic process [goid 0009310]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: response to osmotic stress [goid 0006970]; putrescine/proton symporter: putrescine/ornithine antiporter complement(716169..717488) Escherichia coli K12 945422 NP_415220.1 CDS speF NC_000913.2 717485 719683 R GO_process: polyamine biosynthetic process [goid 0006596]; ornithine decarboxylase isozyme, inducible complement(717485..719683) Escherichia coli K12 945297 YP_001165310.1 CDS ybfK NC_000913.2 719806 720063 D hypothetical protein 719806..720063 Escherichia coli K12 948953 NP_415222.1 CDS kdpE NC_000913.2 720279 720956 R regulator of kdp operon (transcriptional effector); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with KdpD complement(720279..720956) Escherichia coli K12 945302 NP_415223.1 CDS kdpD NC_000913.2 720953 723637 R sensor for high-affinity potassium transport system; sensory histidine kinase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein complement(720953..723637) Escherichia coli K12 946744 NP_415224.1 CDS kdpC NC_000913.2 723630 724202 R high-affinity potassium transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; potassium translocating ATPase, subunit C complement(723630..724202) Escherichia coli K12 947508 NP_415225.1 CDS kdpB NC_000913.2 724211 726259 R ATPase of high-affinity potassium transport system, B chain; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; potassium translocating ATPase, subunit B complement(724211..726259) Escherichia coli K12 947450 NP_415226.1 CDS kdpA NC_000913.2 726282 727955 R ATPase of high-affinity potassium transport system, A chain; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; potassium translocating ATPase, subunit A complement(726282..727955) Escherichia coli K12 946045 YP_588443.1 CDS kdpF NC_000913.2 727955 728044 R GO_component: anchored to membrane [goid 0031225]; potassium ion accessory transporter subunit complement(727955..728044) Escherichia coli K12 948946 NP_415228.1 CDS ybfA NC_000913.2 728357 728563 D predicted protein 728357..728563 Escherichia coli K12 947452 NP_415229.1 CDS rhsC NC_000913.2 728806 732999 D rhsC element core protein RshC 728806..732999 Escherichia coli K12 945306 NP_415230.1 CDS ybfB NC_000913.2 732999 733325 D predicted inner membrane protein 732999..733325 Escherichia coli K12 947566 b0703 CDS ybfO NC_000913.2 733356 734876 D pseudogene, rhs-like; 733356..734876 Escherichia coli K12 946124 NP_415232.1 CDS ybfC NC_000913.2 734873 735442 D predicted protein 734873..735442 Escherichia coli K12 947288 YP_001165311.1 CDS ybfQ NC_000913.2 735668 735922 D predicted transposase 735668..735922 Escherichia coli K12 1450245 b0705 CDS ybfL NC_000913.2 736048 737184 D predicted transposase (pseudogene);putative factor; Not classified putative receptor protein; 736048..737184 Escherichia coli K12 947075 NP_415234.1 CDS ybfD NC_000913.2 737315 738076 D putative DNA ligase; conserved protein 737315..738076 Escherichia coli K12 945176 NP_415235.1 CDS ybgA NC_000913.2 738224 738733 D conserved protein 738224..738733 Escherichia coli K12 944853 NP_415236.1 CDS phr NC_000913.2 738730 740148 D deoxyribodipyrimidine photolyase (photoreactivation); GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; deoxyribodipyrimidine photolyase, FAD-binding 738730..740148 Escherichia coli K12 947005 NP_415237.1 CDS ybgH NC_000913.2 740298 741779 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; predicted transporter complement(740298..741779) Escherichia coli K12 947368 NP_415238.1 CDS ybgI NC_000913.2 742050 742793 D conserved metal-binding protein 742050..742793 Escherichia coli K12 945824 NP_415239.1 CDS ybgJ NC_000913.2 742816 743472 D putative carboxylase; predicted enzyme subunit 742816..743472 Escherichia coli K12 945311 NP_415240.1 CDS ybgK NC_000913.2 743466 744398 D putative carboxylase; predicted enzyme subunit 743466..744398 Escherichia coli K12 945317 NP_415241.1 CDS ybgL NC_000913.2 744388 745122 D putative lactam utilization protein; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to drug [goid 0042493]; predicted lactam utilization protein 744388..745122 Escherichia coli K12 945318 NP_415242.1 CDS nei NC_000913.2 745158 745949 D endonuclease VIII and DNA N-glycosylase with an AP lyase activity; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase 745158..745949 Escherichia coli K12 945320 NP_415243.4 CDS abrB NC_000913.2 745946 746992 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted regulator complement(745946..746992) Escherichia coli K12 945321 NP_415244.4 CDS ybgO NC_000913.2 747144 748205 R predicted fimbrial-like adhesin protein complement(747144..748205) Escherichia coli K12 947550 NP_415245.1 CDS ybgP NC_000913.2 748202 748930 R putative chaperone; GO_process: protein folding [goid 0006457]; predicted assembly protein complement(748202..748930) Escherichia coli K12 945110 NP_415246.2 CDS ybgQ NC_000913.2 748945 751392 R putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein complement(748945..751392) Escherichia coli K12 946537 NP_415247.1 CDS ybgD NC_000913.2 751452 752018 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(751452..752018) Escherichia coli K12 945325 NP_415248.1 CDS gltA NC_000913.2 752408 753691 R GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: anaerobic respiration [goid 0009061]; citrate synthase complement(752408..753691) Escherichia coli K12 945323 NP_415249.1 CDS sdhC NC_000913.2 754400 754789 D succinate dehydrogenase, cytochrome b556; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; GO_process: cytochrome complex assembly [goid 0017004]; succinate dehydrogenase, membrane subunit, binds cytochrome b556 754400..754789 Escherichia coli K12 945316 NP_415250.1 CDS sdhD NC_000913.2 754783 755130 D succinate dehydrogenase, hydrophobic subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; succinate dehydrogenase, membrane subunit, binds cytochrome b556 754783..755130 Escherichia coli K12 945322 NP_415251.1 CDS sdhA NC_000913.2 755130 756896 D GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; succinate dehydrogenase, flavoprotein subunit 755130..756896 Escherichia coli K12 945402 NP_415252.1 CDS sdhB NC_000913.2 756912 757628 D succinate dehydrogenase, iron sulfur protein; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; succinate dehydrogenase, FeS subunit 756912..757628 Escherichia coli K12 945300 NP_415254.1 CDS sucA NC_000913.2 757929 760730 D 2-oxoglutarate dehydrogenase (decarboxylase component); GO_process: tricarboxylic acid cycle [goid 0006099]; 2-oxoglutarate decarboxylase, thiamin-requiring 757929..760730 Escherichia coli K12 945303 NP_415255.1 CDS sucB NC_000913.2 760745 761962 D 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component); GO_process: tricarboxylic acid cycle [goid 0006099]; dihydrolipoyltranssuccinase 760745..761962 Escherichia coli K12 945307 NP_415256.1 CDS sucC NC_000913.2 762237 763403 D GO_process: tricarboxylic acid cycle [goid 0006099]; succinyl-CoA synthetase, beta subunit 762237..763403 Escherichia coli K12 945312 NP_415257.1 CDS sucD NC_000913.2 763403 764272 D succinyl-CoA synthetase, alpha subunit; GO_process: tricarboxylic acid cycle [goid 0006099]; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit 763403..764272 Escherichia coli K12 945314 NP_415258.1 CDS mngR NC_000913.2 764376 765098 R transcriptional regulator of succinylCoA synthetase operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-binding transcriptional dual regulator, fatty-acyl-binding complement(764376..765098) Escherichia coli K12 945371 NP_415259.1 CDS mngA NC_000913.2 765207 767183 D protein modification enzyme, induction of ompC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; GO_process: response to temperature stimulus [goid 0009266]; fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component 765207..767183 Escherichia coli K12 945355 NP_415260.1 CDS mngB NC_000913.2 767201 769834 D putative sugar hydrolase; GO_process: carbohydrate catabolic process [goid 0016052]; alpha-mannosidase 767201..769834 Escherichia coli K12 945359 NP_415261.2 CDS cydA NC_000913.2 770681 772249 D cytochrome d terminal oxidase, polypeptide subunit I; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome d terminal oxidase, subunit I 770681..772249 Escherichia coli K12 945341 NP_415262.1 CDS cydB NC_000913.2 772265 773404 D cytochrome d terminal oxidase polypeptide subunit II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome d terminal oxidase, subunit II 772265..773404 Escherichia coli K12 945347 YP_588444.1 CDS ybgT NC_000913.2 773419 773532 D GO_component: cytoplasm [goid 0005737]; conserved protein 773419..773532 Escherichia coli K12 1450246 NP_415263.1 CDS ybgE NC_000913.2 773532 773825 D conserved inner membrane protein 773532..773825 Escherichia coli K12 945326 NP_415264.1 CDS ybgC NC_000913.2 773975 774379 D predicted acyl-CoA thioesterase 773975..774379 Escherichia coli K12 948907 NP_415265.1 CDS tolQ NC_000913.2 774376 775068 D inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane spanning protein in TolA-TolQ-TolR complex 774376..775068 Escherichia coli K12 948900 NP_415266.1 CDS tolR NC_000913.2 775072 775500 D putative inner membrane protein, involved in the tonB-independent uptake of group A colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane spanning protein in TolA-TolQ-TolR complex 775072..775500 Escherichia coli K12 945328 NP_415267.1 CDS tolA NC_000913.2 775565 776830 D membrane spanning protein, required for outer membrane integrity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane anchored protein in TolA-TolQ-TolR complex 775565..776830 Escherichia coli K12 946625 NP_415268.1 CDS tolB NC_000913.2 776963 778255 D periplasmic protein involved in the tonb-independent uptake of group A colicins; GO_component: periplasmic space [goid 0042597]; periplasmic protein 776963..778255 Escherichia coli K12 945429 NP_415269.1 CDS pal NC_000913.2 778290 778811 D peptidoglycan-associated lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; peptidoglycan-associated outer membrane lipoprotein 778290..778811 Escherichia coli K12 945004 NP_415270.1 CDS ybgF NC_000913.2 778821 779612 D GO_component: periplasmic space [goid 0042597]; predicted protein 778821..779612 Escherichia coli K12 947227 NP_415271.1 CDS nadA NC_000913.2 781308 782351 D quinolinate synthetase, A protein; GO_component: cytoplasm [goid 0005737]; GO_process: NAD biosynthetic process [goid 0009435]; quinolinate synthase, subunit A 781308..782351 Escherichia coli K12 945351 NP_415272.1 CDS pnuC NC_000913.2 782389 783108 D required for NMN transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; predicted nicotinamide mononucleotide transporter 782389..783108 Escherichia coli K12 945350 NP_415273.1 CDS zitB NC_000913.2 783105 784046 R putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; zinc efflux system complement(783105..784046) Escherichia coli K12 945348 NP_415274.1 CDS ybgS NC_000913.2 784160 784540 R putative homeobox protein; conserved protein complement(784160..784540) Escherichia coli K12 945356 NP_415275.1 CDS aroG NC_000913.2 784856 785908 D 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible); GO_process: L-phenylalanine biosynthetic process [goid 0009094]; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible 784856..785908 Escherichia coli K12 945605 NP_415276.1 CDS gpmA NC_000913.2 786066 786818 R GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; phosphoglyceromutase 1 complement(786066..786818) Escherichia coli K12 945068 NP_415277.1 CDS galM NC_000913.2 787020 788060 R GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; galactose-1-epimerase (mutarotase) complement(787020..788060) Escherichia coli K12 944943 NP_415278.1 CDS galK NC_000913.2 788054 789202 R GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: galactose metabolic process [goid 0006012]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to desiccation [goid 0009269]; galactokinase complement(788054..789202) Escherichia coli K12 945358 NP_415279.1 CDS galT NC_000913.2 789206 790252 R GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: galactose metabolic process [goid 0006012]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to desiccation [goid 0009269]; galactose-1-phosphate uridylyltransferase complement(789206..790252) Escherichia coli K12 945357 NP_415280.3 CDS galE NC_000913.2 790262 791278 R GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: galactose metabolic process [goid 0006012]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; GO_process: response to desiccation [goid 0009269]; UDP-galactose-4-epimerase complement(790262..791278) Escherichia coli K12 945354 NP_415281.1 CDS modF NC_000913.2 791539 793011 R ATP-binding component of molybdate transport system; GO_component: cytoplasm [goid 0005737]; GO_function: molybdenum ion transporter activity [goid 0042888]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; fused molybdate transporter subunits of ABC superfamily: ATP-binding components complement(791539..793011) Escherichia coli K12 945368 NP_415282.1 CDS modE NC_000913.2 793079 793867 R molybdate uptake regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(793079..793867) Escherichia coli K12 945366 NP_415283.1 CDS ybhT NC_000913.2 793996 794145 D predicted protein 793996..794145 Escherichia coli K12 945365 NP_415284.1 CDS modA NC_000913.2 794312 795085 D molybdate-binding periplasmic protein; permease; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdate transporter subunit 794312..795085 Escherichia coli K12 945364 NP_415285.1 CDS modB NC_000913.2 795085 795774 D molybdate transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; molybdate transporter subunit 795085..795774 Escherichia coli K12 945361 NP_415286.1 CDS modC NC_000913.2 795777 796835 D ATP-binding component of molybdate transport; GO_component: cytoplasm [goid 0005737]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdate transporter subunit 795777..796835 Escherichia coli K12 945362 NP_415287.1 CDS ybhA NC_000913.2 796836 797654 R putative phosphatase; predicted hydrolase complement(796836..797654) Escherichia coli K12 945372 NP_415288.1 CDS pgl NC_000913.2 797809 798804 D putative isomerase; 6-phosphogluconolactonase 797809..798804 Escherichia coli K12 946398 NP_415289.4 CDS ybhD NC_000913.2 798845 799798 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(798845..799798) Escherichia coli K12 944869 NP_415290.1 CDS ybhH NC_000913.2 799982 801034 D conserved protein 799982..801034 Escherichia coli K12 945375 NP_415291.1 CDS ybhI NC_000913.2 801110 802543 D putative membrane pump protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 801110..802543 Escherichia coli K12 945377 NP_415292.2 CDS ybhJ NC_000913.2 802726 804987 D putative enzyme; predicted hydratase 802726..804987 Escherichia coli K12 945380 NP_415293.1 CDS ybhC NC_000913.2 805221 806504 R putative pectinesterase; GO_component: cell outer membrane [goid 0009279]; GO_process: metabolic process [goid 0008152]; GO_process: polysaccharide catabolic process [goid 0000272]; predicted pectinesterase complement(805221..806504) Escherichia coli K12 945381 NP_415294.1 CDS ybhB NC_000913.2 806656 807132 R predicted kinase inhibitor complement(806656..807132) Escherichia coli K12 945383 NP_415295.1 CDS bioA NC_000913.2 807191 808480 R 7,8-diaminopelargonic acid synthetase; GO_process: biotin biosynthetic process [goid 0009102]; 7,8-diaminopelargonic acid synthase, PLP-dependent complement(807191..808480) Escherichia coli K12 945376 NP_415296.1 CDS bioB NC_000913.2 808567 809607 D biotin synthesis, sulfur insertion?; GO_process: biotin biosynthetic process [goid 0009102]; biotin synthase 808567..809607 Escherichia coli K12 945370 NP_415297.1 CDS bioF NC_000913.2 809604 810758 D GO_process: biotin biosynthetic process [goid 0009102]; 8-amino-7-oxononanoate synthase 809604..810758 Escherichia coli K12 945384 NP_415298.1 CDS bioC NC_000913.2 810745 811500 D biotin biosynthesis; reaction prior to pimeloyl CoA; GO_process: biotin biosynthetic process [goid 0009102]; predicted methltransferase, enzyme of biotin synthesis 810745..811500 Escherichia coli K12 945388 NP_415299.1 CDS bioD NC_000913.2 811493 812170 D GO_process: biotin biosynthetic process [goid 0009102]; dethiobiotin synthetase 811493..812170 Escherichia coli K12 945387 YP_001165312.1 CDS ybhU NC_000913.2 812337 812474 R hypothetical protein complement(812337..812474) Escherichia coli K12 5061512 NP_415300.1 CDS uvrB NC_000913.2 812749 814770 D DNA repair; excision nuclease subunit B; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; excinulease of nucleotide excision repair, DNA damage recognition component 812749..814770 Escherichia coli K12 945385 NP_415301.1 CDS ybhK NC_000913.2 814962 815870 R putative structural protein; predicted transferase with NAD(P)-binding Rossmann-fold domain complement(814962..815870) Escherichia coli K12 945390 NP_415302.1 CDS moaA NC_000913.2 816267 817256 D molybdopterin biosynthesis, protein A; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis protein A 816267..817256 Escherichia coli K12 945392 NP_415303.1 CDS moaB NC_000913.2 817278 817790 D molybdopterin biosynthesis, protein B; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis protein B 817278..817790 Escherichia coli K12 945396 NP_415304.1 CDS moaC NC_000913.2 817793 818278 D GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis, protein C 817793..818278 Escherichia coli K12 945397 NP_415305.1 CDS moaD NC_000913.2 818271 818516 D molybdopterin biosynthesis; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin synthase, small subunit 818271..818516 Escherichia coli K12 945398 NP_415306.1 CDS moaE NC_000913.2 818518 818970 D molybdopterin converting factor, subunit 2; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin synthase, large subunit 818518..818970 Escherichia coli K12 945399 NP_415307.1 CDS ybhL NC_000913.2 819107 819811 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein 819107..819811 Escherichia coli K12 945401 NP_415308.1 CDS ybhM NC_000913.2 820016 820729 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 820016..820729 Escherichia coli K12 949001 NP_415309.1 CDS ybhN NC_000913.2 820765 821721 R conserved inner membrane protein complement(820765..821721) Escherichia coli K12 945410 NP_415310.1 CDS ybhO NC_000913.2 821721 822962 R cardiolipin synthase activity; GO_process: phospholipid biosynthetic process [goid 0008654]; cardiolipin synthase 2 complement(821721..822962) Escherichia coli K12 945409 NP_415311.1 CDS ybhP NC_000913.2 822959 823720 R GO_process: DNA catabolic process [goid 0006308]; predicted DNase complement(822959..823720) Escherichia coli K12 945408 NP_415312.1 CDS ybhQ NC_000913.2 823853 824263 D predicted inner membrane protein 823853..824263 Escherichia coli K12 945405 NP_415313.1 CDS ybhR NC_000913.2 824225 825331 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(824225..825331) Escherichia coli K12 945403 NP_415314.1 CDS ybhS NC_000913.2 825342 826475 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(825342..826475) Escherichia coli K12 945411 NP_415315.4 CDS ybhF NC_000913.2 826468 828204 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components complement(826468..828204) Escherichia coli K12 945413 NP_415316.1 CDS ybhG NC_000913.2 828197 829195 R putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor complement(828197..829195) Escherichia coli K12 945414 NP_415317.4 CDS ybiH NC_000913.2 829195 829866 R putative transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(829195..829866) Escherichia coli K12 945421 NP_415318.1 CDS rhlE NC_000913.2 830095 831459 D putative ATP-dependent RNA helicase; GO_process: RNA modification [goid 0009451]; RNA helicase 830095..831459 Escherichia coli K12 945425 NP_415319.1 CDS ybiA NC_000913.2 831691 832173 R conserved protein complement(831691..832173) Escherichia coli K12 945426 NP_415320.1 CDS dinG NC_000913.2 832293 834443 D probably ATP-dependent helicase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; ATP-dependent DNA helicase 832293..834443 Escherichia coli K12 945431 NP_415321.1 CDS ybiB NC_000913.2 834471 835433 D putative enzyme; predicted transferase/phosphorylase 834471..835433 Escherichia coli K12 945424 NP_415322.1 CDS ybiC NC_000913.2 835574 836659 D putative dehydrogenase; predicted dehydrogenase 835574..836659 Escherichia coli K12 945412 NP_415323.1 CDS ybiJ NC_000913.2 836888 837148 R predicted protein complement(836888..837148) Escherichia coli K12 945433 NP_415324.1 CDS ybiI NC_000913.2 837413 837679 R conserved protein complement(837413..837679) Escherichia coli K12 945434 NP_415325.4 CDS ybiX NC_000913.2 837753 838430 R putative enzyme; conserved protein complement(837753..838430) Escherichia coli K12 947502 NP_415326.1 CDS fiu NC_000913.2 838472 840754 R putative outer membrane receptor for iron transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; predicted iron outer membrane transporter complement(838472..840754) Escherichia coli K12 946246 NP_415327.2 CDS ybiM NC_000913.2 841019 841279 R predicted protein complement(841019..841279) Escherichia coli K12 947523 NP_415328.4 CDS ybiN NC_000913.2 841555 842481 D predicted SAM-dependent methyltransferase 841555..842481 Escherichia coli K12 944938 NP_415329.4 CDS ybiO NC_000913.2 842478 844703 R putative transport protein; predicted mechanosensitive channel complement(842478..844703) Escherichia coli K12 945935 NP_415330.1 CDS glnQ NC_000913.2 844964 845686 R ATP-binding component of glutamine high-affinity transport system; GO_component: cytoplasm [goid 0005737]; GO_process: glutamine biosynthetic process [goid 0006542]; glutamine transporter subunit complement(844964..845686) Escherichia coli K12 945435 NP_415331.1 CDS glnP NC_000913.2 845683 846342 R glutamine high-affinity transport system; membrane component; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamine biosynthetic process [goid 0006542]; glutamine transporter subunit complement(845683..846342) Escherichia coli K12 945621 NP_415332.1 CDS glnH NC_000913.2 846481 847227 R periplasmic glutamine-binding protein; permease; GO_component: periplasmic space [goid 0042597]; GO_process: glutamine biosynthetic process [goid 0006542]; glutamine transporter subunit complement(846481..847227) Escherichia coli K12 944872 NP_415333.1 CDS dps NC_000913.2 847631 848134 R global regulator, starvation conditions; GO_component: cytoplasm [goid 0005737]; GO_process: response to starvation [goid 0042594]; Fe-binding and storage protein complement(847631..848134) Escherichia coli K12 945101 NP_415334.1 CDS rhtA NC_000913.2 848433 849320 R putative transmembrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; threonine and homoserine efflux system complement(848433..849320) Escherichia coli K12 947045 NP_415335.1 CDS ompX NC_000913.2 849673 850188 D outer membrane protein X; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane protein 849673..850188 Escherichia coli K12 944967 NP_415336.1 CDS ybiP NC_000913.2 850237 851820 R putative enzyme; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted hydrolase, inner membrane complement(850237..851820) Escherichia coli K12 945360 NP_415337.1 CDS yliL NC_000913.2 851894 852163 D predicted protein 851894..852163 Escherichia coli K12 945436 NP_415338.1 CDS mntR NC_000913.2 852406 852873 D DNA-binding transcriptional regulator of mntH 852406..852873 Escherichia coli K12 945437 NP_415339.1 CDS ybiR NC_000913.2 852870 853988 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted transporter 852870..853988 Escherichia coli K12 945438 NP_415340.1 CDS ybiS NC_000913.2 854047 854967 R conserved protein complement(854047..854967) Escherichia coli K12 945441 NP_415341.1 CDS ybiT NC_000913.2 855186 856778 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 855186..856778 Escherichia coli K12 945440 NP_415342.1 CDS ybiU NC_000913.2 857019 858284 R predicted protein complement(857019..858284) Escherichia coli K12 945439 NP_415343.1 CDS ybiV NC_000913.2 858436 859251 R predicted hydrolase complement(858436..859251) Escherichia coli K12 945432 NP_415344.1 CDS ybiW NC_000913.2 859397 861829 R GO_process: fermentation [goid 0006113]; predicted pyruvate formate lyase complement(859397..861829) Escherichia coli K12 945444 NP_415345.1 CDS ybiY NC_000913.2 861835 862761 R GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; predicted pyruvate formate lyase activating enzyme complement(861835..862761) Escherichia coli K12 945445 NP_415346.4 CDS fsaA NC_000913.2 862865 863527 D fructose-6-phosphate aldolase; fructose-6-phosphate aldolase 1 862865..863527 Escherichia coli K12 945449 NP_415347.1 CDS moeB NC_000913.2 863603 864352 R molybdopterin biosynthesis; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin synthase sulfurylase complement(863603..864352) Escherichia coli K12 945452 NP_415348.1 CDS moeA NC_000913.2 864352 865587 R molybdopterin biosynthesis; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis protein complement(864352..865587) Escherichia coli K12 945454 NP_415349.1 CDS iaaA NC_000913.2 865791 866756 D putative asparaginase; GO_process: amino acid catabolic process [goid 0009063]; L-asparaginase 865791..866756 Escherichia coli K12 945456 NP_415350.2 CDS gsiA NC_000913.2 866743 868614 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted peptide transport subunits of ABC superfamily: ATP-binding components 866743..868614 Escherichia coli K12 945457 NP_415351.1 CDS gsiB NC_000913.2 868634 870172 D putative transport protein; GO_component: periplasmic space [goid 0042597]; predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily 868634..870172 Escherichia coli K12 945459 NP_415352.1 CDS gsiC NC_000913.2 870190 871110 D putative transport system permease protein; GO_component: organelle inner membrane [goid 0019866]; predicted peptide transporter subunit: membrane component of ABC superfamily 870190..871110 Escherichia coli K12 945460 NP_415353.1 CDS gsiD NC_000913.2 871113 872024 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted peptide transporter subunit: membrane component of ABC superfamily 871113..872024 Escherichia coli K12 945461 NP_415354.1 CDS yliE NC_000913.2 872202 874550 D conserved inner membrane protein 872202..874550 Escherichia coli K12 945462 NP_415355.1 CDS yliF NC_000913.2 874558 875886 D predicted diguanylate cyclase 874558..875886 Escherichia coli K12 945463 NP_415356.1 CDS yliG NC_000913.2 875933 877258 R predicted SAM-dependent methyltransferase complement(875933..877258) Escherichia coli K12 945465 NP_415357.1 CDS bssR NC_000913.2 877471 877854 D putative receptor; conserved protein 877471..877854 Escherichia coli K12 945466 NP_415358.1 CDS yliI NC_000913.2 877965 879080 D putative dehydrogenase; predicted dehydrogenase 877965..879080 Escherichia coli K12 945467 NP_415359.4 CDS yliJ NC_000913.2 879077 879703 R putative transferase; predicted glutathione S-transferase complement(879077..879703) Escherichia coli K12 945469 NP_415360.1 CDS dacC NC_000913.2 879950 881152 D D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6; GO_component: periplasmic space [goid 0042597]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) 879950..881152 Escherichia coli K12 945455 NP_415361.1 CDS deoR NC_000913.2 881199 881957 R transcriptional repressor for deo operon, tsx, nupG; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(881199..881957) Escherichia coli K12 945453 NP_415362.1 CDS ybjG NC_000913.2 882015 882611 R GO_component: peptidoglycan-based cell wall [goid 0009274]; undecaprenyl pyrophosphate phosphatase complement(882015..882611) Escherichia coli K12 945450 NP_415363.1 CDS cmr NC_000913.2 882896 884128 D proton motive force efflux pump; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 882896..884128 Escherichia coli K12 945448 NP_415364.1 CDS ybjH NC_000913.2 884169 884453 R predicted protein complement(884169..884453) Escherichia coli K12 945447 NP_415365.4 CDS ybjI NC_000913.2 884539 885354 R conserved protein complement(884539..885354) Escherichia coli K12 945470 NP_415366.1 CDS ybjJ NC_000913.2 885354 886562 R putative DEOR-type transcriptional regulator; predicted transporter complement(885354..886562) Escherichia coli K12 945471 NP_415367.1 CDS ybjK NC_000913.2 886646 887182 D putative DEOR-type transcriptional regulator; predicted DNA-binding transcriptional regulator 886646..887182 Escherichia coli K12 945473 NP_415368.1 CDS ybjL NC_000913.2 887357 889042 R putative transport protein; predicted transporter complement(887357..889042) Escherichia coli K12 945474 NP_415369.1 CDS ybjM NC_000913.2 889312 889689 D predicted inner membrane protein 889312..889689 Escherichia coli K12 945477 NP_415370.1 CDS grxA NC_000913.2 889719 889976 R glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase; glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) complement(889719..889976) Escherichia coli K12 945479 NP_415371.1 CDS ybjC NC_000913.2 890136 890423 D predicted inner membrane protein 890136..890423 Escherichia coli K12 945481 NP_415372.1 CDS nfsA NC_000913.2 890407 891129 D GO_process: anaerobic respiration [goid 0009061]; nitroreductase A, NADPH-dependent, FMN-dependent 890407..891129 Escherichia coli K12 945483 NP_415373.1 CDS rimK NC_000913.2 891190 892092 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; ribosomal protein S6 modification protein 891190..892092 Escherichia coli K12 945484 NP_415374.1 CDS ybjN NC_000913.2 892180 892656 D putative sensory transduction regulator; predicted oxidoreductase 892180..892656 Escherichia coli K12 945482 NP_415375.1 CDS potF NC_000913.2 893007 894119 D periplasmic putrescine-binding protein; permease protein; GO_component: periplasmic space [goid 0042597]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 893007..894119 Escherichia coli K12 945480 NP_415376.4 CDS potG NC_000913.2 894214 895347 D ATP-binding component of putrescine transport system; GO_component: cytoplasm [goid 0005737]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: ATP-binding component of ABC superfamily 894214..895347 Escherichia coli K12 945476 NP_415377.1 CDS potH NC_000913.2 895357 896310 D putrescine transport protein; permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: membrane component of ABC superfamily 895357..896310 Escherichia coli K12 945475 NP_415378.1 CDS potI NC_000913.2 896307 897152 D putrescine transport protein; permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: membrane component of ABC superfamily 896307..897152 Escherichia coli K12 945485 NP_415379.1 CDS ybjO NC_000913.2 897212 897700 D predicted inner membrane protein 897212..897700 Escherichia coli K12 945488 NP_415380.1 CDS rumB NC_000913.2 897741 898868 D putative enzyme; GO_process: RNA modification [goid 0009451]; 23S rRNA m(5)U747 methyltransferase 897741..898868 Escherichia coli K12 947260 NP_415381.1 CDS artJ NC_000913.2 899067 899798 R arginine 3rd transport system periplasmic binding protein; GO_component: periplasmic space [goid 0042597]; GO_process: arginine biosynthetic process [goid 0006526]; arginine transporter subunit complement(899067..899798) Escherichia coli K12 948981 NP_415382.1 CDS artM NC_000913.2 900089 900757 R arginine 3rd transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: amino acid catabolic process [goid 0009063]; arginine transporter subunit complement(900089..900757) Escherichia coli K12 949066 NP_415383.1 CDS artQ NC_000913.2 900757 901473 R arginine 3rd transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: arginine biosynthetic process [goid 0006526]; arginine transporter subunit complement(900757..901473) Escherichia coli K12 949046 NP_415384.1 CDS artI NC_000913.2 901480 902211 R arginine 3rd transport system periplasmic binding protein; GO_component: periplasmic space [goid 0042597]; GO_process: glutamine biosynthetic process [goid 0006542]; arginine transporter subunit complement(901480..902211) Escherichia coli K12 948988 NP_415385.1 CDS artP NC_000913.2 902229 902957 R ATP-binding component of 3rd arginine transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; arginine transporter subunit complement(902229..902957) Escherichia coli K12 945489 NP_415386.1 CDS ybjP NC_000913.2 903175 903690 R putative lipoprotein; predicted lipoprotein complement(903175..903690) Escherichia coli K12 945491 NP_415387.1 CDS ybjQ NC_000913.2 903816 904139 D conserved protein 903816..904139 Escherichia coli K12 945493 NP_415388.1 CDS ybjR NC_000913.2 904136 904966 D predicted amidase and lipoprotein 904136..904966 Escherichia coli K12 945494 NP_415389.2 CDS ybjS NC_000913.2 904963 905976 R predicted NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(904963..905976) Escherichia coli K12 945495 NP_415390.4 CDS ybjT NC_000913.2 906075 907505 R conserved protein with NAD(P)-binding Rossmann-fold domain complement(906075..907505) Escherichia coli K12 945496 NP_415391.1 CDS ltaE NC_000913.2 907516 908517 R GO_component: cytoplasm [goid 0005737]; GO_process: glycine biosynthetic process [goid 0006545]; L-allo-threonine aldolase, PLP-dependent complement(907516..908517) Escherichia coli K12 944955 NP_415392.1 CDS poxB NC_000913.2 908554 910272 R pyruvate oxidase; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pyruvate catabolic process [goid 0042867]; pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding complement(908554..910272) Escherichia coli K12 946132 NP_415393.1 CDS hcr NC_000913.2 910405 911373 R HCP oxidoreductase, NADH-dependent complement(910405..911373) Escherichia coli K12 947660 NP_415394.4 CDS hcp NC_000913.2 911385 913037 R hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases complement(911385..913037) Escherichia coli K12 946592 NP_415395.2 CDS ybjE NC_000913.2 913181 914080 R putative surface protein; predicted transporter complement(913181..914080) Escherichia coli K12 947142 NP_415396.1 CDS aqpZ NC_000913.2 914575 915270 R transmembrane water channel; aquaporin Z; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to osmotic stress [goid 0006970]; aquaporin complement(914575..915270) Escherichia coli K12 945497 NP_415397.1 CDS ybjD NC_000913.2 915696 917354 D conserved protein with nucleoside triphosphate hydrolase domain 915696..917354 Escherichia coli K12 945498 NP_415398.1 CDS ybjX NC_000913.2 917351 918343 R putative enzyme; conserved protein complement(917351..918343) Escherichia coli K12 946025 NP_415399.4 CDS macA NC_000913.2 918458 919573 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; macrolide transporter subunit, membrane fusion protein (MFP) component 918458..919573 Escherichia coli K12 947322 NP_415400.1 CDS macB NC_000913.2 919570 921516 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component 919570..921516 Escherichia coli K12 945164 NP_415401.1 CDS cspD NC_000913.2 921589 921813 R stress induced DNA replication inhibitor; GO_component: cytoplasm [goid 0005737]; cold shock protein homolog complement(921589..921813) Escherichia coli K12 945669 NP_415402.1 CDS clpS NC_000913.2 922136 922456 D regulatory protein for ClpA substrate specificity 922136..922456 Escherichia coli K12 948443 NP_415403.1 CDS clpA NC_000913.2 922487 924763 D ATP-binding component of serine protease; GO_component: cytoplasm [goid 0005737]; ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity 922487..924763 Escherichia coli K12 945764 NP_415404.1 CDS infA NC_000913.2 925448 925666 R protein chain initiation factor IF-1; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; translation initiation factor IF-1 complement(925448..925666) Escherichia coli K12 945500 NP_415405.1 CDS aat NC_000913.2 925951 926655 R leucyl, phenylalanyl-tRNA-protein transferase; GO_component: cytoplasm [goid 0005737]; GO_process: proteolysis [goid 0006508]; leucyl/phenylalanyl-tRNA-protein transferase complement(925951..926655) Escherichia coli K12 945490 NP_415406.1 CDS cydC NC_000913.2 926697 928418 R ATP-binding component of cytochrome-related transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component complement(926697..928418) Escherichia coli K12 945504 NP_415407.1 CDS cydD NC_000913.2 928419 930185 R ATP-binding component of cytochrome-related transport, Zn sensitive; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component complement(928419..930185) Escherichia coli K12 949052 NP_415408.1 CDS trxB NC_000913.2 930308 931273 R thioredoxin reductase; GO_component: cytoplasm [goid 0005737]; thioredoxin reductase, FAD/NAD(P)-binding complement(930308..931273) Escherichia coli K12 949054 NP_415409.1 CDS lrp NC_000913.2 931818 932312 D regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: leucine biosynthetic process [goid 0009098]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, leucine-binding 931818..932312 Escherichia coli K12 949051 NP_415410.1 CDS ftsK NC_000913.2 932447 936436 D cell division protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: SOS response [goid 0009432]; DNA-binding membrane protein required for chromosome resolution and partitioning 932447..936436 Escherichia coli K12 945102 NP_415411.2 CDS lolA NC_000913.2 936595 937206 D periplasmic protein effects translocation of lipoproteins from inner membrane to outer; GO_component: periplasmic space [goid 0042597]; chaperone for lipoproteins 936595..937206 Escherichia coli K12 948989 NP_415412.1 CDS rarA NC_000913.2 937217 938560 D putative polynucleotide enzyme; recombination protein 937217..938560 Escherichia coli K12 945505 NP_415413.1 CDS serS NC_000913.2 938651 939943 D serine tRNA synthetase; also charges selenocystein tRNA with serine; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine 938651..939943 Escherichia coli K12 945506 NP_415414.4 CDS dmsA NC_000913.2 940182 942626 D anaerobic dimethyl sulfoxide reductase subunit A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; dimethyl sulfoxide reductase, anaerobic, subunit A 940182..942626 Escherichia coli K12 945508 NP_415415.1 CDS dmsB NC_000913.2 942637 943254 D anaerobic dimethyl sulfoxide reductase subunit B; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; dimethyl sulfoxide reductase, anaerobic, subunit B 942637..943254 Escherichia coli K12 945507 NP_415416.1 CDS dmsC NC_000913.2 943256 944119 D anaerobic dimethyl sulfoxide reductase subunit C; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; dimethyl sulfoxide reductase, anaerobic, subunit C 943256..944119 Escherichia coli K12 945502 NP_415417.1 CDS ycaC NC_000913.2 944154 944780 R GO_process: amino acid catabolic process [goid 0009063]; predicted hydrolase complement(944154..944780) Escherichia coli K12 945512 NP_415418.1 CDS ycaD NC_000913.2 945094 946242 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 945094..946242 Escherichia coli K12 945515 NP_415419.2 CDS ycaM NC_000913.2 946452 947882 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 946452..947882 Escherichia coli K12 945518 NP_415420.1 CDS ycaN NC_000913.2 947883 948791 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(947883..948791) Escherichia coli K12 945523 NP_415421.1 CDS ycaK NC_000913.2 948891 949481 D GO_function: electron carrier activity [goid 0009055]; conserved protein 948891..949481 Escherichia coli K12 945520 NP_415422.1 CDS pflA NC_000913.2 949563 950303 R GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; pyruvate formate lyase activating enzyme 1 complement(949563..950303) Escherichia coli K12 945517 NP_415423.1 CDS pflB NC_000913.2 950495 952777 R formate acetyltransferase 1; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: amino acid catabolic process [goid 0009063]; pyruvate formate lyase I complement(950495..952777) Escherichia coli K12 945514 NP_415424.1 CDS focA NC_000913.2 952832 953689 R probable formate transporter (formate channel 1); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; formate transporter complement(952832..953689) Escherichia coli K12 945513 NP_415425.4 CDS ycaO NC_000913.2 954095 955855 R conserved protein complement(954095..955855) Escherichia coli K12 945509 NP_415426.1 CDS ycaP NC_000913.2 955985 956677 D conserved inner membrane protein 955985..956677 Escherichia coli K12 945525 NP_415427.1 CDS serC NC_000913.2 956876 957964 D 3-phosphoserine aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: L-serine biosynthetic process [goid 0006564]; 3-phosphoserine/phosphohydroxythreonine aminotransferase 956876..957964 Escherichia coli K12 945527 NP_415428.1 CDS aroA NC_000913.2 958035 959318 D GO_process: chorismate biosynthetic process [goid 0009423]; 5-enolpyruvylshikimate-3-phosphate synthetase 958035..959318 Escherichia coli K12 945528 NP_415429.2 CDS ycaL NC_000913.2 959487 960251 D putative heat shock protein; GO_process: response to temperature stimulus [goid 0009266]; predicted peptidase with chaperone function 959487..960251 Escherichia coli K12 945534 NP_415430.1 CDS cmk NC_000913.2 960424 961107 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytidylate kinase 960424..961107 Escherichia coli K12 945535 NP_415431.1 CDS rpsA NC_000913.2 961218 962891 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S1 961218..962891 Escherichia coli K12 945536 NP_415432.1 CDS ihfB NC_000913.2 963051 963335 D integration host factor (IHF), beta subunit; site-specific recombination; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; integration host factor (IHF), DNA-binding protein, beta subunit 963051..963335 Escherichia coli K12 945533 NP_415433.4 CDS ycaI NC_000913.2 963543 965807 D conserved inner membrane protein 963543..965807 Escherichia coli K12 945531 NP_415434.1 CDS msbA NC_000913.2 965844 967592 D ATP-binding transport protein; multicopy suppressor of htrB; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component 965844..967592 Escherichia coli K12 945530 NP_415435.1 CDS lpxK NC_000913.2 967589 968575 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: K antigen biosynthetic process [goid 0009248]; lipid A 4'kinase 967589..968575 Escherichia coli K12 945526 NP_415436.1 CDS ycaQ NC_000913.2 968612 969844 D conserved protein 968612..969844 Escherichia coli K12 945524 NP_415437.1 CDS ycaR NC_000913.2 969896 970078 D conserved protein 969896..970078 Escherichia coli K12 945537 NP_415438.1 CDS kdsB NC_000913.2 970075 970821 D CTP:CMP-3-deoxy-D-manno-octulosonate transferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: K antigen biosynthetic process [goid 0009248]; 3-deoxy-manno-octulosonate cytidylyltransferase 970075..970821 Escherichia coli K12 945539 NP_415439.1 CDS ycbJ NC_000913.2 970975 971868 D conserved protein 970975..971868 Escherichia coli K12 945545 NP_415440.1 CDS ycbC NC_000913.2 971845 972624 R conserved inner membrane protein complement(971845..972624) Escherichia coli K12 945546 NP_415441.1 CDS smtA NC_000913.2 972760 973545 D S-adenosylmethionine-dependent methyltransferase; GO_process: glycerol metabolic process [goid 0006071]; predicted S-adenosyl-L-methionine-dependent methyltransferase 972760..973545 Escherichia coli K12 945547 NP_415442.1 CDS mukF NC_000913.2 973542 974864 D mukF protein (killing factor KICB); Involved in chromosome partioning, Ca2+ binding protein 973542..974864 Escherichia coli K12 945548 NP_415443.1 CDS mukE NC_000913.2 974872 975549 D protein involved in chromosome partitioning 974872..975549 Escherichia coli K12 945550 NP_415444.1 CDS mukB NC_000913.2 975549 980009 D kinesin-like cell division protein involved in chromosome partitioning; fused chromosome partitioning protein: predicted nucleotide hydrolase/conserved protein/conserved protein 975549..980009 Escherichia coli K12 945549 NP_415445.1 CDS ycbB NC_000913.2 980270 982117 D putative amidase; predicted carboxypeptidase 980270..982117 Escherichia coli K12 945541 NP_415446.1 CDS ycbK NC_000913.2 982298 982846 D conserved protein 982298..982846 Escherichia coli K12 945538 NP_415447.1 CDS ycbL NC_000913.2 982873 983520 D predicted metal-binding enzyme 982873..983520 Escherichia coli K12 945551 NP_415448.1 CDS aspC NC_000913.2 983742 984932 R aspartate aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: aspartate biosynthetic process [goid 0006532]; aspartate aminotransferase, PLP-dependent complement(983742..984932) Escherichia coli K12 945553 NP_415449.1 CDS ompF NC_000913.2 985117 986205 R outer membrane protein 1a (Ia;b;F); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane porin 1a (Ia;b;F) complement(985117..986205) Escherichia coli K12 945554 NP_415450.1 CDS asnS NC_000913.2 986808 988208 R asparagine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; asparaginyl tRNA synthetase complement(986808..988208) Escherichia coli K12 945555 NP_415451.1 CDS pncB NC_000913.2 988377 989579 R GO_component: periplasmic space [goid 0042597]; GO_process: NAD biosynthetic process [goid 0009435]; nicotinate phosphoribosyltransferase complement(988377..989579) Escherichia coli K12 946648 NP_415452.1 CDS pepN NC_000913.2 989845 992457 D aminopeptidase N 989845..992457 Escherichia coli K12 947253 NP_415453.1 CDS ssuB NC_000913.2 992500 993267 R ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; alkanesulfonate transporter subunit complement(992500..993267) Escherichia coli K12 947220 NP_415454.4 CDS ssuC NC_000913.2 993264 994055 R membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; alkanesulfonate transporter subunit complement(993264..994055) Escherichia coli K12 947216 NP_415455.1 CDS ssuD NC_000913.2 994066 995211 R GO_process: sulfur metabolic process [goid 0006790]; alkanesulfonate monooxygenase, FMNH(2)-dependent complement(994066..995211) Escherichia coli K12 945557 NP_415456.4 CDS ssuA NC_000913.2 995208 996167 R periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; alkanesulfonate transporter subunit complement(995208..996167) Escherichia coli K12 945560 NP_415457.1 CDS ssuE NC_000913.2 996160 996735 R GO_function: electron carrier activity [goid 0009055]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: response to starvation [goid 0042594]; NAD(P)H-dependent FMN reductase complement(996160..996735) Escherichia coli K12 945947 NP_415458.2 CDS ycbQ NC_000913.2 997091 997630 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 997091..997630 Escherichia coli K12 948306 NP_415459.1 CDS ycbR NC_000913.2 997713 998414 D GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 997713..998414 Escherichia coli K12 946773 NP_415460.1 CDS ycbS NC_000913.2 998439 1001039 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane usher protein 998439..1001039 Escherichia coli K12 946934 NP_415461.1 CDS ycbT NC_000913.2 1001030 1002100 D GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1001030..1002100 Escherichia coli K12 947185 NP_415462.1 CDS ycbU NC_000913.2 1002112 1002654 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1002112..1002654 Escherichia coli K12 945561 NP_415463.2 CDS ycbV NC_000913.2 1002662 1003177 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1002662..1003177 Escherichia coli K12 945562 NP_415464.4 CDS ycbF NC_000913.2 1003170 1003880 D GO_process: protein folding [goid 0006457]; predicted periplasmic pilini chaperone 1003170..1003880 Escherichia coli K12 945559 NP_415465.1 CDS pyrD NC_000913.2 1003991 1005001 D dihydro-orotate dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; dihydro-orotate oxidase, FMN-linked 1003991..1005001 Escherichia coli K12 945556 NP_415466.4 CDS ycbW NC_000913.2 1005175 1005717 D predicted protein 1005175..1005717 Escherichia coli K12 945552 NP_415467.1 CDS ycbX NC_000913.2 1005714 1006823 R GO_function: electron carrier activity [goid 0009055]; predicted 2Fe-2S cluster-containing protein complement(1005714..1006823) Escherichia coli K12 945563 NP_415468.1 CDS rlmL NC_000913.2 1007067 1009175 D putative oxidoreductase; predicted methyltransferase 1007067..1009175 Escherichia coli K12 945564 NP_415469.1 CDS uup NC_000913.2 1009187 1011094 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 1009187..1011094 Escherichia coli K12 945566 NP_415470.1 CDS pqiA NC_000913.2 1011224 1012477 D paraquat-inducible protein A; paraquat-inducible membrane protein A 1011224..1012477 Escherichia coli K12 944999 NP_415471.1 CDS pqiB NC_000913.2 1012482 1014122 D paraquat-inducible protein B 1012482..1014122 Escherichia coli K12 945653 NP_415472.2 CDS ymbA NC_000913.2 1014119 1014682 D conserved protein 1014119..1014682 Escherichia coli K12 946972 NP_415473.1 CDS rmf NC_000913.2 1014938 1015105 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; ribosome modulation factor 1014938..1015105 Escherichia coli K12 945567 NP_415474.1 CDS fabA NC_000913.2 1015175 1015693 R beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase; beta-hydroxydecanoyl thioester dehydrase complement(1015175..1015693) Escherichia coli K12 945568 NP_415475.1 CDS ycbZ NC_000913.2 1015762 1017522 R putative ATP-dependent protease; GO_process: proteolysis [goid 0006508]; predicted peptidase complement(1015762..1017522) Escherichia coli K12 945569 NP_415476.1 CDS ycbG NC_000913.2 1017708 1018160 D putative dehydrogenase; conserved protein 1017708..1018160 Escherichia coli K12 945570 NP_415477.1 CDS ompA NC_000913.2 1018236 1019276 R outer membrane protein 3a (II*;G;d); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane protein A (3a;II*;G;d) complement(1018236..1019276) Escherichia coli K12 945571 NP_415478.1 CDS sulA NC_000913.2 1019633 1020142 R suppressor of lon; inhibits cell division and ftsZ ring formation; GO_component: periplasmic space [goid 0042597]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; SOS cell division inhibitor complement(1019633..1020142) Escherichia coli K12 947335 NP_415479.1 CDS sxy NC_000913.2 1020361 1020990 D conserved protein 1020361..1020990 Escherichia coli K12 946504 NP_415480.2 CDS yccS NC_000913.2 1020953 1023106 R predicted inner membrane protein complement(1020953..1023106) Escherichia coli K12 947001 NP_415481.1 CDS yccF NC_000913.2 1023125 1023571 R conserved inner membrane protein complement(1023125..1023571) Escherichia coli K12 945594 NP_415482.1 CDS helD NC_000913.2 1023694 1025748 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA helicase IV 1023694..1025748 Escherichia coli K12 946227 NP_415483.2 CDS mgsA NC_000913.2 1025780 1026238 R GO_component: cytoplasm [goid 0005737]; GO_process: methylglyoxal metabolic process [goid 0009438]; methylglyoxal synthase complement(1025780..1026238) Escherichia coli K12 945574 NP_415484.1 CDS yccT NC_000913.2 1026334 1026996 R conserved protein complement(1026334..1026996) Escherichia coli K12 945577 NP_415485.4 CDS yccU NC_000913.2 1027169 1027582 D predicted CoA-binding protein with NAD(P)-binding Rossmann-fold domain 1027169..1027582 Escherichia coli K12 949008 NP_415486.4 CDS hspQ NC_000913.2 1027627 1027944 R DNA-binding protein, hemimethylated complement(1027627..1027944) Escherichia coli K12 945578 NP_415487.4 CDS yccW NC_000913.2 1028002 1029192 R putative oxidoreductase; predicted methyltransferase complement(1028002..1029192) Escherichia coli K12 946691 NP_415488.1 CDS yccX NC_000913.2 1029287 1029565 D predicted acylphosphatase 1029287..1029565 Escherichia coli K12 945304 NP_415489.4 CDS yccK NC_000913.2 1029562 1029891 R putative sulfite reductase; predicted sulfite reductase subunit complement(1029562..1029891) Escherichia coli K12 945023 NP_415490.1 CDS yccA NC_000913.2 1029982 1030641 R putative carrier/transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; inner membrane protein complement(1029982..1030641) Escherichia coli K12 946016 NP_415491.1 CDS hyaA NC_000913.2 1031362 1032480 D hydrogenase-1 small subunit; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 1, small subunit 1031362..1032480 Escherichia coli K12 945579 NP_415492.1 CDS hyaB NC_000913.2 1032477 1034270 D hydrogenase-1 large subunit; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 1, large subunit 1032477..1034270 Escherichia coli K12 945580 NP_415493.1 CDS hyaC NC_000913.2 1034289 1034996 D probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; hydrogenase 1, b-type cytochrome subunit 1034289..1034996 Escherichia coli K12 945581 NP_415494.1 CDS hyaD NC_000913.2 1034993 1035580 D processing of HyaA and HyaB proteins; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved in processing of HyaA and HyaB proteins 1034993..1035580 Escherichia coli K12 945575 NP_415495.1 CDS hyaE NC_000913.2 1035577 1035975 D processing of HyaA and HyaB proteins; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved in processing of HyaA and HyaB proteins 1035577..1035975 Escherichia coli K12 945573 NP_415496.1 CDS hyaF NC_000913.2 1035972 1036829 D nickel incorporation into hydrogenase-1 proteins; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved in nickel incorporation into hydrogenase-1 proteins 1035972..1036829 Escherichia coli K12 945572 NP_415497.1 CDS appC NC_000913.2 1036963 1038507 D GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome bd-II oxidase, subunit I 1036963..1038507 Escherichia coli K12 945585 NP_415498.1 CDS appB NC_000913.2 1038519 1039655 D probable third cytochrome oxidase, subunit II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome bd-II oxidase, subunit II 1038519..1039655 Escherichia coli K12 947547 YP_001165313.1 CDS yccB NC_000913.2 1039668 1039760 D hypothetical protein 1039668..1039760 Escherichia coli K12 948955 NP_415500.1 CDS appA NC_000913.2 1039840 1041138 D phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; phosphoanhydride phosphorylase 1039840..1041138 Escherichia coli K12 946206 NP_415501.1 CDS etk NC_000913.2 1041253 1043433 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; cryptic autophosphorylating protein tyrosine kinase Etk complement(1041253..1043433) Escherichia coli K12 947409 NP_415502.4 CDS etp NC_000913.2 1043453 1043899 R putative phosphatase; GO_process: protein modification [goid 0006464]; phosphotyrosine-protein phosphatase complement(1043453..1043899) Escherichia coli K12 945236 NP_415503.1 CDS gfcE NC_000913.2 1043887 1045026 R putative function in exopolysaccharide production; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted exopolysaccharide export protein complement(1043887..1045026) Escherichia coli K12 945586 NP_415504.1 CDS gfcD NC_000913.2 1045072 1047168 R conserved protein complement(1045072..1047168) Escherichia coli K12 945588 NP_415505.1 CDS gfcC NC_000913.2 1047168 1047914 R conserved protein complement(1047168..1047914) Escherichia coli K12 944978 NP_415506.1 CDS gfcB NC_000913.2 1047911 1048555 R putative regulator; predicted outer membrane lipoprotein complement(1047911..1048555) Escherichia coli K12 949118 NP_415507.2 CDS gfcA NC_000913.2 1048662 1048967 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted protein complement(1048662..1048967) Escherichia coli K12 945029 YP_588445.1 CDS insA NC_000913.2 1049056 1049331 D KpLE2 phage-like element; IS1 repressor protein InsA 1049056..1049331 Escherichia coli K12 1450250 NP_415508.1 CDS insB NC_000913.2 1049250 1049753 D IS1 transposase InsAB' 1049250..1049753 Escherichia coli K12 945009 NP_415509.1 CDS cspH NC_000913.2 1050186 1050398 R cold shock-like protein; GO_process: response to temperature stimulus [goid 0009266]; stress protein, member of the CspA-family complement(1050186..1050398) Escherichia coli K12 945590 NP_415510.1 CDS cspG NC_000913.2 1050684 1050896 D homolog of Salmonella cold shock protein; GO_process: response to temperature stimulus [goid 0009266]; DNA-binding transcriptional regulator 1050684..1050896 Escherichia coli K12 945591 NP_415511.1 CDS ymcE NC_000913.2 1051070 1051300 D suppresses fabA and ts growth mutation; cold shock gene 1051070..1051300 Escherichia coli K12 946951 YP_588446.1 CDS gnsA NC_000913.2 1051290 1051463 D GO_component: cytoplasm [goid 0005737]; predicted regulator of phosphatidylethanolamine synthesis 1051290..1051463 Escherichia coli K12 1450249 NP_415512.1 CDS yccM NC_000913.2 1051512 1052585 R predicted 4Fe-4S membrane protein complement(1051512..1052585) Escherichia coli K12 946295 NP_415513.2 CDS torS NC_000913.2 1052657 1055401 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase in two-component regulatory system with TorR complement(1052657..1055401) Escherichia coli K12 945595 NP_415514.1 CDS torT NC_000913.2 1055484 1056512 D part of regulation of tor operon, periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; periplasmic sensory protein associated with the TorRS two-component regulatory system 1055484..1056512 Escherichia coli K12 946289 NP_415515.1 CDS torR NC_000913.2 1056485 1057177 R response transcriptional regulator for torA (sensor TorS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with TorS complement(1056485..1057177) Escherichia coli K12 946182 NP_415516.1 CDS torC NC_000913.2 1057307 1058479 D trimethylamine N-oxide reductase, cytochrome c-type subunit; GO_component: periplasmic space [goid 0042597]; GO_function: electron carrier activity [goid 0009055]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: transcription [goid 0006350]; trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit 1057307..1058479 Escherichia coli K12 946252 NP_415517.1 CDS torA NC_000913.2 1058479 1061025 D trimethylamine N-oxide reductase subunit; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit 1058479..1061025 Escherichia coli K12 946267 NP_415518.1 CDS torD NC_000913.2 1061022 1061621 D part of trimethylamine-N-oxide oxidoreductase; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I 1061022..1061621 Escherichia coli K12 945625 NP_415519.1 CDS cbpM NC_000913.2 1061773 1062078 R modulator of CbpA co-chaperone complement(1061773..1062078) Escherichia coli K12 945597 NP_415520.1 CDS cbpA NC_000913.2 1062078 1062998 R curved DNA-binding protein; functions closely related to DnaJ; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK complement(1062078..1062998) Escherichia coli K12 947572 NP_415521.1 CDS yccE NC_000913.2 1063259 1064515 D predicted protein 1063259..1064515 Escherichia coli K12 947468 NP_415522.1 CDS agp NC_000913.2 1064808 1066049 D periplasmic glucose-1-phosphatase; GO_component: periplasmic space [goid 0042597]; GO_process: glucose metabolic process [goid 0006006]; glucose-1-phosphatase/inositol phosphatase 1064808..1066049 Escherichia coli K12 945773 NP_415523.1 CDS yccJ NC_000913.2 1066087 1066314 R predicted protein complement(1066087..1066314) Escherichia coli K12 948930 NP_415524.1 CDS wrbA NC_000913.2 1066335 1066931 R flavoprotein WrbA (Trp repressor binding protein); GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; predicted flavoprotein in Trp regulation complement(1066335..1066931) Escherichia coli K12 947263 NP_415525.2 CDS ymdF NC_000913.2 1067304 1067477 D GO_component: cytoplasm [goid 0005737]; conserved protein 1067304..1067477 Escherichia coli K12 945598 NP_415526.4 CDS rutG NC_000913.2 1067734 1069062 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(1067734..1069062) Escherichia coli K12 946589 NP_415527.4 CDS rutF NC_000913.2 1069083 1069577 R predicted oxidoreductase, flavin:NADH component complement(1069083..1069577) Escherichia coli K12 946594 NP_415528.1 CDS rutE NC_000913.2 1069588 1070178 R predicted oxidoreductase complement(1069588..1070178) Escherichia coli K12 946591 NP_415529.1 CDS rutD NC_000913.2 1070188 1070988 R predicted hydrolase complement(1070188..1070988) Escherichia coli K12 946586 NP_415530.1 CDS rutC NC_000913.2 1070996 1071382 R conserved protein complement(1070996..1071382) Escherichia coli K12 945599 NP_415531.2 CDS rutB NC_000913.2 1071394 1072086 R predicted enzyme complement(1071394..1072086) Escherichia coli K12 945699 NP_415532.3 CDS rutA NC_000913.2 1072086 1073234 R predicted monooxygenase complement(1072086..1073234) Escherichia coli K12 945643 NP_415533.1 CDS rutR NC_000913.2 1073465 1074103 D hypothetical transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1073465..1074103 Escherichia coli K12 945075 NP_415534.1 CDS putA NC_000913.2 1074143 1078105 R proline dehydrogenase, P5C dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(1074143..1078105) Escherichia coli K12 945600 NP_415535.1 CDS putP NC_000913.2 1078528 1080036 D major sodium/proline symporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: proline:sodium symporter activity [goid 0005298]; GO_process: proline biosynthetic process [goid 0006561]; proline:sodium symporter 1078528..1080036 Escherichia coli K12 945602 b4490 CDS efeU NC_000913.2 1080579 1081408 D pseudogene ferrous iron permease; join(1080579..1080683,1080683..1081408) Escherichia coli K12 948956 NP_415537.1 CDS ycdO NC_000913.2 1081466 1082593 D conserved protein 1081466..1082593 Escherichia coli K12 945603 NP_415538.1 CDS ycdB NC_000913.2 1082599 1083870 D conserved protein 1082599..1083870 Escherichia coli K12 946500 NP_415539.1 CDS phoH NC_000913.2 1084215 1085279 D PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; conserved protein with nucleoside triphosphate hydrolase domain 1084215..1085279 Escherichia coli K12 948010 NP_415540.1 CDS pgaD NC_000913.2 1085329 1085742 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein complement(1085329..1085742) Escherichia coli K12 947503 NP_415541.1 CDS pgaC NC_000913.2 1085744 1087069 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted glycosyl transferase complement(1085744..1087069) Escherichia coli K12 945606 NP_415542.1 CDS pgaB NC_000913.2 1087062 1089080 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted enzyme associated with biofilm formation complement(1087062..1089080) Escherichia coli K12 945604 NP_415543.1 CDS pgaA NC_000913.2 1089089 1091512 R putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein complement(1089089..1091512) Escherichia coli K12 945596 NP_415544.1 CDS ycdT NC_000913.2 1092099 1093457 D predicted diguanylate cyclase 1092099..1093457 Escherichia coli K12 945593 NP_415545.1 CDS insF NC_000913.2 1093498 1094364 R IS3 element protein InsF complement(1093498..1094364) Escherichia coli K12 945587 NP_415546.1 CDS insE NC_000913.2 1094361 1094669 R IS3 element protein InsE complement(1094361..1094669) Escherichia coli K12 945584 b1028 CDS ymdE NC_000913.2 1094728 1095069 D pseudogene; 1094728..1095069 Escherichia coli K12 945589 NP_415548.1 CDS ycdU NC_000913.2 1095066 1096052 D predicted inner membrane protein 1095066..1096052 Escherichia coli K12 945592 NP_415551.2 CDS ghrA NC_000913.2 1097109 1098047 D putative dehydrogenase; 2-ketoacid reductase 1097109..1098047 Escherichia coli K12 946431 NP_415552.1 CDS ycdX NC_000913.2 1098102 1098839 D GO_process: DNA-dependent DNA replication [goid 0006261]; predicted zinc-binding hydrolase 1098102..1098839 Escherichia coli K12 948477 NP_415553.1 CDS ycdY NC_000913.2 1098863 1099417 D putative oxidoreductase component; conserved protein 1098863..1099417 Escherichia coli K12 945609 NP_415554.4 CDS ycdZ NC_000913.2 1099519 1100010 D predicted inner membrane protein 1099519..1100010 Escherichia coli K12 945617 NP_415555.1 CDS csgG NC_000913.2 1100074 1100907 R curli production assembly/transport component, 2nd curli operon; GO_component: fimbrium [goid 0009289]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane lipoprotein complement(1100074..1100907) Escherichia coli K12 945619 NP_415556.1 CDS csgF NC_000913.2 1100934 1101350 R curli production assembly/transport component, 2nd curli operon; GO_component: fimbrium [goid 0009289]; predicted transport protein complement(1100934..1101350) Escherichia coli K12 945622 NP_415557.1 CDS csgE NC_000913.2 1101375 1101764 R curli production assembly/transport component, 2nd curli operon; GO_component: fimbrium [goid 0009289]; predicted transport protein complement(1101375..1101764) Escherichia coli K12 945711 NP_415558.1 CDS csgD NC_000913.2 1101769 1102419 R putative 2-component transcriptional regulator for 2nd curli operon; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator in two-component regulatory system complement(1101769..1102419) Escherichia coli K12 949119 NP_415559.1 CDS csgB NC_000913.2 1103174 1103629 D minor curlin subunit precursor, similar ro CsgA; GO_component: fimbrium [goid 0009289]; GO_component: cell outer membrane [goid 0009279]; GO_process: glycoprotein biosynthetic process [goid 0009101]; curlin nucleator protein, minor subunit in curli complex 1103174..1103629 Escherichia coli K12 947391 NP_415560.1 CDS csgA NC_000913.2 1103670 1104125 D curlin major subunit, coiled surface structures; cryptic; GO_component: fimbrium [goid 0009289]; GO_component: cell outer membrane [goid 0009279]; GO_process: glycoprotein biosynthetic process [goid 0009101]; cryptic curlin major subunit 1103670..1104125 Escherichia coli K12 949055 NP_415561.1 CDS csgC NC_000913.2 1104184 1104516 D putative curli production protein; GO_component: fimbrium [goid 0009289]; predicted curli production protein 1104184..1104516 Escherichia coli K12 945623 NP_415562.1 CDS ymdA NC_000913.2 1104637 1104948 D predicted protein 1104637..1104948 Escherichia coli K12 949012 NP_415563.1 CDS ymdB NC_000913.2 1105043 1105576 D putative polyprotein; conserved protein 1105043..1105576 Escherichia coli K12 946987 NP_415564.2 CDS ymdC NC_000913.2 1105578 1106999 D putative synthase; predicted hydrolase 1105578..1106999 Escherichia coli K12 947321 NP_415565.1 CDS mdoC NC_000913.2 1107007 1108164 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glucan biosynthetic process [goid 0009250]; GO_process: response to osmotic stress [goid 0006970]; membrane protein required for modification of periplasmic glucan complement(1107007..1108164) Escherichia coli K12 946944 NP_415566.1 CDS mdoG NC_000913.2 1108558 1110093 D periplasmic glucans biosynthesis protein; GO_component: periplasmic space [goid 0042597]; GO_process: glucan biosynthetic process [goid 0009250]; GO_process: response to osmotic stress [goid 0006970]; glucan biosynthesis protein, periplasmic 1108558..1110093 Escherichia coli K12 945005 NP_415567.1 CDS mdoH NC_000913.2 1110086 1112629 D membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to osmotic stress [goid 0006970]; glucan biosynthesis: glycosyl transferase 1110086..1112629 Escherichia coli K12 945624 NP_415568.1 CDS yceK NC_000913.2 1112802 1113029 D predicted lipoprotein 1112802..1113029 Escherichia coli K12 945613 NP_415569.4 CDS msyB NC_000913.2 1113030 1113404 R acidic protein suppresses mutants lacking function of protein export; predicted protein complement(1113030..1113404) Escherichia coli K12 945612 NP_415571.1 CDS mdtG NC_000913.2 1113487 1114713 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted drug efflux system complement(1113487..1114713) Escherichia coli K12 945627 NP_415572.1 CDS lpxL NC_000913.2 1114885 1115805 R heat shock protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; lauryl-acyl carrier protein (ACP)-dependent acyltransferase complement(1114885..1115805) Escherichia coli K12 946216 NP_415573.1 CDS yceA NC_000913.2 1116030 1117082 D GO_process: cell cycle [goid 0007049]; conserved protein 1116030..1117082 Escherichia coli K12 945601 NP_415574.1 CDS yceI NC_000913.2 1117124 1117699 R predicted protein complement(1117124..1117699) Escherichia coli K12 946145 NP_415575.1 CDS yceJ NC_000913.2 1117703 1118269 R GO_process: cytochrome complex assembly [goid 0017004]; predicted cytochrome b561 complement(1117703..1118269) Escherichia coli K12 945628 NP_415576.1 CDS yceO NC_000913.2 1118530 1118670 R predicted protein complement(1118530..1118670) Escherichia coli K12 945629 NP_415577.1 CDS solA NC_000913.2 1118691 1119809 R sarcosine oxidase-like protein; N-methyltryptophan oxidase, FAD-binding complement(1118691..1119809) Escherichia coli K12 944983 NP_415578.3 CDS bssS NC_000913.2 1119924 1120178 R predicted protein complement(1119924..1120178) Escherichia coli K12 946104 NP_415579.1 CDS dinI NC_000913.2 1120465 1120710 R damage-inducible protein I; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA damage-inducible protein I complement(1120465..1120710) Escherichia coli K12 945022 NP_415580.1 CDS pyrC NC_000913.2 1120784 1121830 R GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; dihydro-orotase complement(1120784..1121830) Escherichia coli K12 945787 NP_415581.1 CDS yceB NC_000913.2 1121936 1122496 R predicted lipoprotein complement(1121936..1122496) Escherichia coli K12 947377 NP_415582.1 CDS grxB NC_000913.2 1122630 1123277 R glutaredoxin 2; glutaredoxin 2 (Grx2) complement(1122630..1123277) Escherichia coli K12 946926 NP_415583.4 CDS mdtH NC_000913.2 1123341 1124549 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted drug efflux system complement(1123341..1124549) Escherichia coli K12 946920 NP_415584.1 CDS rimJ NC_000913.2 1124785 1125369 D acetylation of N-terminal alanine of 30S ribosomal subunit protein S5; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; ribosomal-protein-S5-alanine N-acetyltransferase 1124785..1125369 Escherichia coli K12 946910 NP_415585.1 CDS yceH NC_000913.2 1125380 1126027 D conserved protein 1125380..1126027 Escherichia coli K12 945633 NP_415586.1 CDS yceM NC_000913.2 1126029 1126952 D putative virulence factor; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 1126029..1126952 Escherichia coli K12 945204 NP_415587.1 CDS yceN NC_000913.2 1127062 1128597 D putative virulence factor; predicted inner membrane protein 1127062..1128597 Escherichia coli K12 945487 NP_415588.1 CDS flgN NC_000913.2 1128637 1129053 R protein of flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; export chaperone for FlgK and FlgL complement(1128637..1129053) Escherichia coli K12 945634 NP_415589.1 CDS flgM NC_000913.2 1129058 1129351 R anti-FliA (anti-sigma) factor; also known as RflB protein; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; anti-sigma factor for FliA (sigma 28) complement(1129058..1129351) Escherichia coli K12 946684 NP_415590.1 CDS flgA NC_000913.2 1129427 1130086 R flagellar biosynthesis; assembly of basal-body periplasmic P ring; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; assembly protein for flagellar basal-body periplasmic P ring complement(1129427..1130086) Escherichia coli K12 946300 NP_415591.1 CDS flgB NC_000913.2 1130241 1130657 D flagellar biosynthesis, cell-proximal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-proximal portion of basal-body rod 1130241..1130657 Escherichia coli K12 945678 NP_415592.1 CDS flgC NC_000913.2 1130661 1131065 D flagellar biosynthesis, cell-proximal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-proximal portion of basal-body rod 1130661..1131065 Escherichia coli K12 946687 NP_415593.1 CDS flgD NC_000913.2 1131077 1131772 D flagellar biosynthesis, initiation of hook assembly; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar hook assembly protein 1131077..1131772 Escherichia coli K12 945813 NP_415594.1 CDS flgE NC_000913.2 1131797 1133005 D flagellar biosynthesis, hook protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar hook protein 1131797..1133005 Escherichia coli K12 945636 NP_415595.1 CDS flgF NC_000913.2 1133025 1133780 D flagellar biosynthesis, cell-proximal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-proximal portion of basal-body rod 1133025..1133780 Escherichia coli K12 945639 NP_415596.1 CDS flgG NC_000913.2 1133952 1134734 D flagellar biosynthesis, cell-distal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-distal portion of basal-body rod 1133952..1134734 Escherichia coli K12 945647 NP_415597.1 CDS flgH NC_000913.2 1134787 1135485 D flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: flagellum [goid 0019861]; GO_component: cell outer membrane [goid 0009279]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar protein of basal-body outer-membrane L ring 1134787..1135485 Escherichia coli K12 946996 NP_415598.3 CDS flgI NC_000913.2 1135497 1136594 D homolog of Salmonella P-ring of flagella basal body; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; predicted flagellar basal body protein 1135497..1136594 Escherichia coli K12 947534 NP_415599.1 CDS flgJ NC_000913.2 1136594 1137535 D flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; muramidase 1136594..1137535 Escherichia coli K12 947456 NP_415600.1 CDS flgK NC_000913.2 1137601 1139244 D flagellar biosynthesis, hook-filament junction protein 1; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; flagellar hook-filament junction protein 1 1137601..1139244 Escherichia coli K12 945648 NP_415601.1 CDS flgL NC_000913.2 1139256 1140209 D flagellar biosynthesis; hook-filament junction protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; flagellar hook-filament junction protein 1139256..1140209 Escherichia coli K12 945646 NP_415602.1 CDS rne NC_000913.2 1140405 1143590 R RNase E, membrane attachment, mRNA turnover, maturation 5S RNA; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein complement(1140405..1143590) Escherichia coli K12 945641 NP_415603.2 CDS yceQ NC_000913.2 1143725 1144045 D predicted protein 1143725..1144045 Escherichia coli K12 945640 NP_415604.1 CDS rluC NC_000913.2 1144163 1145122 D GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridylate synthase 1144163..1145122 Escherichia coli K12 945637 NP_415605.2 CDS yceF NC_000913.2 1145234 1145818 R predicted protein complement(1145234..1145818) Escherichia coli K12 945631 NP_415606.1 CDS yceD NC_000913.2 1146017 1146538 D conserved protein 1146017..1146538 Escherichia coli K12 945650 NP_415607.1 CDS rpmF NC_000913.2 1146590 1146763 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L32 1146590..1146763 Escherichia coli K12 945657 NP_415608.2 CDS plsX NC_000913.2 1146844 1147914 D glycerolphosphate auxotrophy in plsB background; GO_process: phospholipid biosynthetic process [goid 0008654]; fatty acid/phospholipid synthesis protein 1146844..1147914 Escherichia coli K12 946165 NP_415609.1 CDS fabH NC_000913.2 1147982 1148935 D 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase; GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] synthase III 1147982..1148935 Escherichia coli K12 946003 NP_415610.1 CDS fabD NC_000913.2 1148951 1149880 D GO_component: cytoplasm [goid 0005737]; malonyl-CoA-[acyl-carrier-protein] transacylase 1148951..1149880 Escherichia coli K12 945766 NP_415611.1 CDS fabG NC_000913.2 1149893 1150627 D GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] reductase 1149893..1150627 Escherichia coli K12 945645 NP_415612.1 CDS acpP NC_000913.2 1150838 1151074 D acyl carrier protein; GO_process: acyl-carrier-protein biosynthetic process [goid 0042967]; acyl carrier protein (ACP) 1150838..1151074 Escherichia coli K12 944805 NP_415613.1 CDS fabF NC_000913.2 1151162 1152403 D GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] synthase II 1151162..1152403 Escherichia coli K12 946665 NP_415614.1 CDS pabC NC_000913.2 1152523 1153332 D 4-amino-4-deoxychorismate lyase; GO_process: folic acid biosynthetic process [goid 0046656]; 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex 1152523..1153332 Escherichia coli K12 946647 NP_415615.1 CDS yceG NC_000913.2 1153335 1154357 D putative thymidylate kinase; predicted aminodeoxychorismate lyase 1153335..1154357 Escherichia coli K12 945660 NP_415616.1 CDS tmk NC_000913.2 1154347 1154988 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidylate kinase 1154347..1154988 Escherichia coli K12 945663 NP_415617.1 CDS holB NC_000913.2 1154985 1155989 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, delta prime subunit 1154985..1155989 Escherichia coli K12 945661 NP_415618.1 CDS ycfH NC_000913.2 1156000 1156797 D predicted metallodependent hydrolase 1156000..1156797 Escherichia coli K12 945656 NP_415619.1 CDS ptsG NC_000913.2 1157092 1158525 D PTS system, glucose-specific IIBC component; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; fused glucose-specific PTS enzymes: IIB component/IIC component 1157092..1158525 Escherichia coli K12 945651 NP_415620.1 CDS fhuE NC_000913.2 1158585 1160774 R outer membrane receptor for ferric iron uptake; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; ferric-rhodotorulic acid outer membrane transporter complement(1158585..1160774) Escherichia coli K12 945649 NP_415621.3 CDS hinT NC_000913.2 1161108 1161467 D GO_process: translation [goid 0006412]; purine nucleoside phosphoramidase 1161108..1161467 Escherichia coli K12 948549 NP_415622.1 CDS ycfL NC_000913.2 1161470 1161847 D predicted protein 1161470..1161847 Escherichia coli K12 948539 NP_415623.1 CDS ycfM NC_000913.2 1161861 1162502 D predicted outer membrane lipoprotein 1161861..1162502 Escherichia coli K12 948536 NP_415624.1 CDS thiK NC_000913.2 1162483 1163307 D putative beta-glucosidase; thiamin kinase 1162483..1163307 Escherichia coli K12 948525 NP_415625.1 CDS nagZ NC_000913.2 1163318 1164343 D GO_process: peptidoglycan metabolic process [goid 0000270]; beta N-acetyl-glucosaminidase 1163318..1164343 Escherichia coli K12 945671 NP_415626.4 CDS ycfP NC_000913.2 1164366 1164908 D conserved protein 1164366..1164908 Escherichia coli K12 945676 NP_415627.1 CDS ndh NC_000913.2 1165308 1166612 D respiratory NADH dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; respiratory NADH dehydrogenase 2/cupric reductase 1165308..1166612 Escherichia coli K12 946792 NP_415628.1 CDS ycfJ NC_000913.2 1166822 1167361 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted protein 1166822..1167361 Escherichia coli K12 945977 NP_415629.4 CDS ycfQ NC_000913.2 1167423 1168055 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(1167423..1168055) Escherichia coli K12 947425 NP_415630.1 CDS bhsA NC_000913.2 1168296 1168553 D predicted protein 1168296..1168553 Escherichia coli K12 945492 NP_415631.1 CDS ycfS NC_000913.2 1168635 1169597 R conserved protein complement(1168635..1169597) Escherichia coli K12 945666 NP_415632.1 CDS mfd NC_000913.2 1169741 1173187 R transcription-repair coupling factor; mutation frequency decline; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; transcription-repair coupling factor complement(1169741..1173187) Escherichia coli K12 945681 NP_415633.1 CDS ycfT NC_000913.2 1173315 1174388 R predicted inner membrane protein complement(1173315..1174388) Escherichia coli K12 945679 NP_415634.1 CDS lolC NC_000913.2 1174650 1175849 D membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; outer membrane-specific lipoprotein transporter subunit 1174650..1175849 Escherichia coli K12 945673 NP_415635.4 CDS lolD NC_000913.2 1175842 1176543 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; outer membrane-specific lipoprotein transporter subunit 1175842..1176543 Escherichia coli K12 945670 NP_415636.1 CDS lolE NC_000913.2 1176543 1177787 D putative kinase; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; outer membrane-specific lipoprotein transporter subunit 1176543..1177787 Escherichia coli K12 945665 NP_415637.1 CDS nagK NC_000913.2 1177816 1178727 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; N-acetyl-D-glucosamine kinase 1177816..1178727 Escherichia coli K12 945664 NP_415638.1 CDS cobB NC_000913.2 1178743 1179582 D putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; deacetylase of acetyl-CoA synthetase, NAD-dependent 1178743..1179582 Escherichia coli K12 945687 NP_415639.1 CDS ycfZ NC_000913.2 1179702 1180490 R predicted inner membrane protein complement(1179702..1180490) Escherichia coli K12 945685 NP_415640.2 CDS ymfA NC_000913.2 1180487 1180948 R predicted inner membrane protein complement(1180487..1180948) Escherichia coli K12 945684 NP_415641.1 CDS potD NC_000913.2 1181006 1182052 R spermidine/putrescine periplasmic transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit complement(1181006..1182052) Escherichia coli K12 945682 NP_415642.1 CDS potC NC_000913.2 1182049 1182843 R spermidine/putrescine transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit complement(1182049..1182843) Escherichia coli K12 945691 NP_415643.3 CDS potB NC_000913.2 1182840 1183667 R spermidine/putrescine transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit complement(1182840..1183667) Escherichia coli K12 945692 NP_415644.1 CDS potA NC_000913.2 1183681 1184817 R ATP-binding component of spermidine/putrescine transport; GO_component: cytoplasm [goid 0005737]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit complement(1183681..1184817) Escherichia coli K12 946323 NP_415645.1 CDS pepT NC_000913.2 1185067 1186293 D putative peptidase T; peptidase T 1185067..1186293 Escherichia coli K12 946333 NP_415646.4 CDS ycfD NC_000913.2 1186342 1187463 R conserved protein complement(1186342..1187463) Escherichia coli K12 945391 NP_415647.1 CDS phoQ NC_000913.2 1187539 1188999 R sensor protein PhoQ; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-compoent regulatory system with PhoP complement(1187539..1188999) Escherichia coli K12 946326 NP_415648.1 CDS phoP NC_000913.2 1188999 1189670 R transcriptional regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with PhoQ complement(1188999..1189670) Escherichia coli K12 945697 NP_415649.1 CDS purB NC_000913.2 1189839 1191209 R GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; adenylosuccinate lyase complement(1189839..1191209) Escherichia coli K12 945695 NP_415650.1 CDS hflD NC_000913.2 1191213 1191854 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lysogenization regulator complement(1191213..1191854) Escherichia coli K12 945693 NP_415651.4 CDS mnmA NC_000913.2 1191890 1192996 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase complement(1191890..1192996) Escherichia coli K12 945690 NP_415652.1 CDS nudJ NC_000913.2 1193050 1193511 R bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase complement(1193050..1193511) Escherichia coli K12 945689 NP_415653.4 CDS rluE NC_000913.2 1193521 1194174 R GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridine synthase complement(1193521..1194174) Escherichia coli K12 945701 NP_415654.1 CDS icd NC_000913.2 1194346 1195596 D isocitrate dehydrogenase, specific for NADP+; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: anaerobic respiration [goid 0009061]; e14 prophage; isocitrate dehydrogenase, specific for NADP+ 1194346..1195596 Escherichia coli K12 945702 NP_415655.1 CDS ymfD NC_000913.2 1196090 1196755 R e14 prophage; predicted SAM-dependent methyltransferase complement(1196090..1196755) Escherichia coli K12 945329 NP_415656.1 CDS ymfE NC_000913.2 1196756 1197460 R e14 prophage; predicted inner membrane protein complement(1196756..1197460) Escherichia coli K12 946722 NP_415657.1 CDS lit NC_000913.2 1197918 1198811 D phage T4 late gene expression; at locus of e14 element; e14 prophage; cell death peptidase, inhibitor of T4 late gene expression 1197918..1198811 Escherichia coli K12 948421 NP_415658.1 CDS intE NC_000913.2 1198902 1200029 R prophage e14 integrase; e14 prophage; predicted integrase complement(1198902..1200029) Escherichia coli K12 948034 NP_415659.1 CDS xisE NC_000913.2 1200010 1200255 R e14 prophage; predicted excisionase complement(1200010..1200255) Escherichia coli K12 945705 NP_415661.2 CDS ymfI NC_000913.2 1200720 1201061 D e14 prophage; predicted protein 1200720..1201061 Escherichia coli K12 945712 NP_415662.2 CDS ymfJ NC_000913.2 1200999 1201307 R e14 prophage; predicted protein complement(1200999..1201307) Escherichia coli K12 945718 NP_415663.1 CDS ymfK NC_000913.2 1201482 1202156 R e14 prophage; repressor protein phage e14 complement(1201482..1202156) Escherichia coli K12 945719 NP_415664.2 CDS ymfT NC_000913.2 1202247 1202447 D e14 prophage; predicted DNA-binding transcriptional regulator 1202247..1202447 Escherichia coli K12 945720 NP_415665.2 CDS ymfL NC_000913.2 1202491 1203048 D e14 prophage; predicted DNA-binding transcriptional regulator 1202491..1203048 Escherichia coli K12 945717 NP_415666.1 CDS ymfM NC_000913.2 1203045 1203383 D e14 prophage; predicted protein 1203045..1203383 Escherichia coli K12 945715 NP_415667.1 CDS ymfN NC_000913.2 1203393 1204760 D e14 prophage; predicted DNA-binding transcriptional regulator 1203393..1204760 Escherichia coli K12 945708 NP_415668.1 CDS ymfR NC_000913.2 1204772 1204954 D e14 prophage; predicted protein 1204772..1204954 Escherichia coli K12 945700 b1151 CDS ymfO NC_000913.2 1204954 1205365 D e14 prophage; conserved protein; 1204954..1205365 Escherichia coli K12 945698 b1152 CDS ymfP NC_000913.2 1205366 1206145 D pseudogene, e14 prophage; 1205366..1206145 Escherichia coli K12 945703 NP_415671.1 CDS ymfQ NC_000913.2 1206136 1206720 D e14 prophage; conserved protein 1206136..1206720 Escherichia coli K12 945707 NP_415672.1 CDS ycfK NC_000913.2 1206724 1207353 D e14 prophage; predicted protein 1206724..1207353 Escherichia coli K12 945726 NP_415673.1 CDS ymfS NC_000913.2 1207355 1207768 D e14 prophage; predicted protein 1207355..1207768 Escherichia coli K12 945724 NP_415674.1 CDS tfaE NC_000913.2 1207740 1208342 R e14 prophage; predicted tail fiber assembly protein complement(1207740..1208342) Escherichia coli K12 945723 b1157 CDS stfE NC_000913.2 1208342 1208842 R pseudogene, e14 prophage; predicted side tail fiber protein fragment; complement(1208342..1208842) Escherichia coli K12 945722 NP_415676.1 CDS pinE NC_000913.2 1208908 1209462 D inversion of adjacent DNA; at locus of e14 element; e14 prophage; site-specific DNA recombinase 1208908..1209462 Escherichia coli K12 945721 NP_415677.1 CDS mcrA NC_000913.2 1209569 1210402 D restriction of DNA at 5-methylcytosine residues; at locus of e14 element; e14 prophage; 5-methylcytosine-specific restriction endonuclease B 1209569..1210402 Escherichia coli K12 945727 b4519 CDS icdC NC_000913.2 1210636 1210800 D conserved protein (pseudogene); GO_component: cytoplasm [goid 0005737]; 1210636..1210800 Escherichia coli K12 4056026 NP_415678.1 CDS elbA NC_000913.2 1210903 1211226 R predicted protein complement(1210903..1211226) Escherichia coli K12 945729 NP_415679.1 CDS ycgX NC_000913.2 1211926 1212330 R predicted protein complement(1211926..1212330) Escherichia coli K12 945733 NP_415680.1 CDS ycgE NC_000913.2 1212551 1213282 R putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1212551..1213282) Escherichia coli K12 945735 NP_415681.1 CDS ycgF NC_000913.2 1213487 1214698 R predicted FAD-binding phosphodiesterase complement(1213487..1214698) Escherichia coli K12 947592 NP_415682.1 CDS ycgZ NC_000913.2 1215012 1215248 D predicted protein 1215012..1215248 Escherichia coli K12 945885 NP_415683.1 CDS ymgA NC_000913.2 1215291 1215563 D predicted protein 1215291..1215563 Escherichia coli K12 948991 NP_415684.1 CDS ymgB NC_000913.2 1215592 1215858 D predicted protein 1215592..1215858 Escherichia coli K12 945340 NP_415685.1 CDS ymgC NC_000913.2 1215971 1216219 D predicted protein 1215971..1216219 Escherichia coli K12 945090 NP_415686.2 CDS ycgG NC_000913.2 1216551 1218074 D putative proteases; conserved inner membrane protein 1216551..1218074 Escherichia coli K12 945738 YP_588447.1 CDS ymgF NC_000913.2 1218206 1218424 D GO_component: integral to membrane [goid 0016021]; predicted protein 1218206..1218424 Escherichia coli K12 1450253 b4491 CDS ycgH NC_000913.2 1218824 1221471 D Probable pseudogene putative ATP-binding component of a transport system; 1218824..1221471 Escherichia coli K12 2847703 NP_415689.2 CDS ymgD NC_000913.2 1221528 1221857 R predicted protein complement(1221528..1221857) Escherichia coli K12 945732 NP_415690.3 CDS ymgG NC_000913.2 1221867 1222151 R predicted protein complement(1221867..1222151) Escherichia coli K12 945728 YP_001165314.1 CDS ymgI NC_000913.2 1222213 1222386 R hypothetical protein complement(1222213..1222386) Escherichia coli K12 5061515 YP_001165315.1 CDS ymgJ NC_000913.2 1222487 1222672 D hypothetical protein 1222487..1222672 Escherichia coli K12 5061516 b4521 CDS ycgI NC_000913.2 1222787 1223130 D pseudogene; join(1222787..1222894,1222894..1223130) Escherichia coli K12 1450255 NP_415692.1 CDS minE NC_000913.2 1223502 1223768 R cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation; GO_component: cytoplasm [goid 0005737]; cell division topological specificity factor complement(1223502..1223768) Escherichia coli K12 945740 NP_415693.1 CDS minD NC_000913.2 1223772 1224584 R cell division inhibitor, a membrane ATPase, activates minC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane ATPase of the MinC-MinD-MinE system complement(1223772..1224584) Escherichia coli K12 945741 NP_415694.1 CDS minC NC_000913.2 1224608 1225303 R cell division inhibitor, inhibits ftsZ ring formation; GO_component: cytoplasm [goid 0005737]; cell division inhibitor complement(1224608..1225303) Escherichia coli K12 945744 NP_415695.1 CDS ycgJ NC_000913.2 1225823 1226191 D predicted protein 1225823..1226191 Escherichia coli K12 946155 NP_415696.1 CDS ycgK NC_000913.2 1226294 1226695 R predicted protein complement(1226294..1226695) Escherichia coli K12 946963 NP_415697.3 CDS ycgL NC_000913.2 1226904 1227230 D conserved protein 1226904..1227230 Escherichia coli K12 946226 NP_415698.1 CDS ycgM NC_000913.2 1227302 1227961 D putative isomerase; predicted isomerase/hydrolase 1227302..1227961 Escherichia coli K12 946115 NP_415699.5 CDS ycgN NC_000913.2 1228038 1228499 D conserved protein 1228038..1228499 Escherichia coli K12 945804 NP_415700.4 CDS hlyE NC_000913.2 1228706 1229617 R GO_component: extracellular region [goid 0005576]; hemolysin E complement(1228706..1229617) Escherichia coli K12 945745 NP_415701.1 CDS umuD NC_000913.2 1229990 1230409 D SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: transcription [goid 0006350]; GO_process: SOS response [goid 0009432]; DNA polymerase V, subunit D 1229990..1230409 Escherichia coli K12 945746 NP_415702.1 CDS umuC NC_000913.2 1230409 1231677 D SOS mutagenesis and repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA polymerase V, subunit C 1230409..1231677 Escherichia coli K12 946359 NP_415703.3 CDS dsbB NC_000913.2 1231723 1232253 R reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella; GO_component: flagellum [goid 0019861]; GO_component: fimbrium [goid 0009289]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I complement(1231723..1232253) Escherichia coli K12 946344 NP_415704.1 CDS nhaB NC_000913.2 1232399 1233940 R Na+/H+ antiporter, pH independent; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to pH [goid 0009268]; sodium:proton antiporter complement(1232399..1233940) Escherichia coli K12 944822 NP_415705.1 CDS fadR NC_000913.2 1234161 1234880 D negative regulator for fad regulon, and positive activator of fabA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator of fatty acid metabolism 1234161..1234880 Escherichia coli K12 948652 NP_415706.1 CDS ycgB NC_000913.2 1234932 1236464 R conserved protein complement(1234932..1236464) Escherichia coli K12 946365 NP_415707.1 CDS dadA NC_000913.2 1236794 1238092 D D-amino acid dehydrogenase subunit; GO_process: amino acid catabolic process [goid 0009063]; D-amino acid dehydrogenase 1236794..1238092 Escherichia coli K12 945752 NP_415708.1 CDS dadX NC_000913.2 1238102 1239172 D alanine racemase 2, catabolic; GO_process: amino acid catabolic process [goid 0009063]; GO_process: alanine biosynthetic process [goid 0006523]; alanine racemase 2, PLP-binding 1238102..1239172 Escherichia coli K12 945754 NP_415709.2 CDS cvrA NC_000913.2 1239558 1241294 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cation/proton antiporter complement(1239558..1241294) Escherichia coli K12 945755 NP_415710.1 CDS ldcA NC_000913.2 1241389 1242303 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; L,D-carboxypeptidase A complement(1241389..1242303) Escherichia coli K12 945756 NP_415711.2 CDS emtA NC_000913.2 1242403 1243014 D murein transglycosylase E; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; lytic murein endotransglycosylase E 1242403..1243014 Escherichia coli K12 945655 NP_415712.1 CDS ycgR NC_000913.2 1243016 1243750 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; protein involved in flagellar function complement(1243016..1243750) Escherichia coli K12 947609 NP_415713.1 CDS ymgE NC_000913.2 1243951 1244205 D transglycosylase asociated protein; predicted inner membrane protein 1243951..1244205 Escherichia coli K12 945760 NP_415714.1 CDS ycgY NC_000913.2 1244383 1244823 D predicted protein 1244383..1244823 Escherichia coli K12 945761 NP_415715.1 CDS treA NC_000913.2 1244902 1246599 R trehalase, periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: glucose metabolic process [goid 0006006]; GO_process: response to osmotic stress [goid 0006970]; periplasmic trehalase complement(1244902..1246599) Escherichia coli K12 945757 NP_415716.3 CDS dhaM NC_000913.2 1246919 1248340 R PTS hybrid protein; fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component complement(1246919..1248340) Escherichia coli K12 945749 NP_415717.1 CDS dhaL NC_000913.2 1248348 1248980 R dihydroxyacetone kinase, C-terminal domain complement(1248348..1248980) Escherichia coli K12 945748 NP_415718.6 CDS dhaK NC_000913.2 1248991 1250061 R dihydroxyacetone kinase, N-terminal domain complement(1248991..1250061) Escherichia coli K12 945747 NP_415719.2 CDS dhaR NC_000913.2 1250289 1252208 D GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator, dihydroxyacetone 1250289..1252208 Escherichia coli K12 945743 NP_415720.1 CDS ycgV NC_000913.2 1252308 1255175 R putative adhesion and penetration protein; GO_component: cell outer membrane [goid 0009279]; predicted adhesin complement(1252308..1255175) Escherichia coli K12 945767 NP_415721.1 CDS ychF NC_000913.2 1255944 1257035 R putative GTP-binding protein; predicted GTP-binding protein complement(1255944..1257035) Escherichia coli K12 945769 NP_415722.1 CDS pth NC_000913.2 1257152 1257736 R GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; peptidyl-tRNA hydrolase complement(1257152..1257736) Escherichia coli K12 945765 NP_415723.1 CDS ychH NC_000913.2 1258014 1258292 D predicted inner membrane protein 1258014..1258292 Escherichia coli K12 945762 NP_415724.2 CDS ychM NC_000913.2 1258347 1260026 R putative sulfate transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(1258347..1260026) Escherichia coli K12 945770 NP_415725.1 CDS prs NC_000913.2 1260151 1261098 R phosphoribosylpyrophosphate synthetase; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; phosphoribosylpyrophosphate synthase complement(1260151..1261098) Escherichia coli K12 945772 NP_415726.1 CDS ispE NC_000913.2 1261249 1262100 R GO_component: cytoplasm [goid 0005737]; 4-diphosphocytidyl-2-C-methylerythritol kinase complement(1261249..1262100) Escherichia coli K12 945774 NP_415727.1 CDS lolB NC_000913.2 1262100 1262723 R outer-membrane lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; chaperone for lipoproteins complement(1262100..1262723) Escherichia coli K12 945775 NP_415728.1 CDS hemA NC_000913.2 1262937 1264193 D glutamyl-tRNA reductase; GO_component: cytoplasm [goid 0005737]; GO_process: response to drug [goid 0042493]; glutamyl tRNA reductase 1262937..1264193 Escherichia coli K12 945777 NP_415729.1 CDS prfA NC_000913.2 1264235 1265317 D GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; peptide chain release factor RF-1 1264235..1265317 Escherichia coli K12 949002 NP_415730.1 CDS prmC NC_000913.2 1265317 1266150 D possible protoporphyrinogen oxidase; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 1265317..1266150 Escherichia coli K12 945779 NP_415731.1 CDS ychQ NC_000913.2 1266147 1266539 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 1266147..1266539 Escherichia coli K12 945781 NP_415732.1 CDS ychA NC_000913.2 1266543 1267352 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 1266543..1267352 Escherichia coli K12 945784 NP_415733.1 CDS kdsA NC_000913.2 1267388 1268242 D 2-dehydro-3-deoxyphosphooctulonate aldolase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: K antigen biosynthetic process [goid 0009248]; 3-deoxy-D-manno-octulosonate 8-phosphate synthase 1267388..1268242 Escherichia coli K12 945785 YP_025297.1 CDS ldrA NC_000913.2 1268391 1268498 R small toxic polypeptide; toxic polypeptide, small complement(1268391..1268498) Escherichia coli K12 2847733 YP_025298.1 CDS ldrB NC_000913.2 1268926 1269033 R small toxic polypeptide; toxic polypeptide, small complement(1268926..1269033) Escherichia coli K12 2847735 YP_025299.1 CDS ldrC NC_000913.2 1269461 1269568 R small toxic polypeptide; toxic polypeptide, small complement(1269461..1269568) Escherichia coli K12 2847775 NP_415734.1 CDS chaA NC_000913.2 1269972 1271072 R sodium-calcium/proton antiporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; calcium/sodium:proton antiporter complement(1269972..1271072) Escherichia coli K12 945790 NP_415735.1 CDS chaB NC_000913.2 1271342 1271572 D cation transport regulator; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; predicted cation regulator 1271342..1271572 Escherichia coli K12 945792 NP_415736.2 CDS chaC NC_000913.2 1271730 1272425 D cation transport regulator; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; regulatory protein for cation transport 1271730..1272425 Escherichia coli K12 945793 NP_415737.1 CDS ychN NC_000913.2 1272469 1272822 R conserved protein complement(1272469..1272822) Escherichia coli K12 945794 NP_415738.2 CDS ychO NC_000913.2 1273007 1274401 D conserved protein, invasin-like; predicted invasin 1273007..1274401 Escherichia coli K12 945801 NP_415739.1 CDS narL NC_000913.2 1274402 1275052 R pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) complement(1274402..1275052) Escherichia coli K12 945795 NP_415740.1 CDS narX NC_000913.2 1275045 1276841 R nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with NarL complement(1275045..1276841) Escherichia coli K12 945788 NP_415741.1 CDS narK NC_000913.2 1277180 1278571 D nitrite extrusion protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrate/nitrite transporter 1277180..1278571 Escherichia coli K12 945783 NP_415742.1 CDS narG NC_000913.2 1279087 1282830 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 1, alpha subunit 1279087..1282830 Escherichia coli K12 945782 NP_415743.1 CDS narH NC_000913.2 1282827 1284365 D nitrate reductase 1, beta subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 1, beta (Fe-S) subunit 1282827..1284365 Escherichia coli K12 945780 NP_415744.1 CDS narJ NC_000913.2 1284362 1285072 D nitrate reductase 1, delta subunit, assembly function; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 1284362..1285072 Escherichia coli K12 945807 NP_415745.1 CDS narI NC_000913.2 1285072 1285749 D nitrate reductase 1, cytochrome b(NR), gamma subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrate reductase 1, gamma (cytochrome b(NR)) subunit 1285072..1285749 Escherichia coli K12 945808 NP_415746.1 CDS ychS NC_000913.2 1285932 1286207 D predicted protein 1285932..1286207 Escherichia coli K12 945809 NP_415747.2 CDS tpr NC_000913.2 1286310 1286399 R a protamine-like protein; GO_component: cytoplasm [goid 0005737]; predicted protamine-like protein complement(1286310..1286399) Escherichia coli K12 946224 NP_415748.1 CDS purU NC_000913.2 1287005 1287847 R formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis; GO_component: cytoplasm [goid 0005737]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; formyltetrahydrofolate hydrolase complement(1287005..1287847) Escherichia coli K12 945827 NP_415749.1 CDS ychJ NC_000913.2 1287897 1288355 R conserved protein complement(1287897..1288355) Escherichia coli K12 945828 NP_415750.1 CDS rssA NC_000913.2 1288429 1289373 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved protein 1288429..1289373 Escherichia coli K12 945725 NP_415751.1 CDS rssB NC_000913.2 1289465 1290478 D Hnr protein; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; response regulator of RpoS 1289465..1290478 Escherichia coli K12 945855 NP_415752.1 CDS galU NC_000913.2 1290680 1291588 D GO_process: galactose metabolic process [goid 0006012]; GO_process: glucose metabolic process [goid 0006006]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to desiccation [goid 0009269]; glucose-1-phosphate uridylyltransferase 1290680..1291588 Escherichia coli K12 945730 NP_415753.1 CDS hns NC_000913.2 1291732 1292145 R DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; GO_process: taxis [goid 0042330]; global DNA-binding transcriptional dual regulator H-NS complement(1291732..1292145) Escherichia coli K12 945829 NP_415754.1 CDS tdk NC_000913.2 1292750 1293367 D thymidine kinase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidine kinase/deoxyuridine kinase 1292750..1293367 Escherichia coli K12 945834 b4573 CDS ychG NC_000913.2 1293794 1294545 R pseudogene, transposase homolog; complement(join(1293794..1294215,1294215..1294361,1294363..1294545)) Escherichia coli K12 4056037 NP_415757.1 CDS adhE NC_000913.2 1294669 1297344 R CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase; GO_process: fermentation [goid 0006113]; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase complement(1294669..1297344) Escherichia coli K12 945837 NP_415758.1 CDS ychE NC_000913.2 1297821 1298468 D putative channel protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 1297821..1298468 Escherichia coli K12 945836 NP_415759.1 CDS oppA NC_000913.2 1299206 1300837 D oligopeptide transport; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan metabolic process [goid 0000270]; GO_process: protein folding [goid 0006457]; oligopeptide transporter subunit 1299206..1300837 Escherichia coli K12 945830 NP_415760.1 CDS oppB NC_000913.2 1300923 1301843 D oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1300923..1301843 Escherichia coli K12 945823 NP_415761.1 CDS oppC NC_000913.2 1301858 1302766 D homolog of Salmonella oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1301858..1302766 Escherichia coli K12 945810 YP_025300.1 CDS oppD NC_000913.2 1302778 1303791 D homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1302778..1303791 Escherichia coli K12 945802 NP_415763.1 CDS oppF NC_000913.2 1303788 1304792 D homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1303788..1304792 Escherichia coli K12 945818 NP_415764.4 CDS yciU NC_000913.2 1304845 1305174 R predicted protein complement(1304845..1305174) Escherichia coli K12 945819 NP_415765.1 CDS cls NC_000913.2 1305209 1306669 R cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; GO_process: response to drug [goid 0042493]; cardiolipin synthase 1 complement(1305209..1306669) Escherichia coli K12 945821 YP_001165316.1 CDS yciY NC_000913.2 1306812 1306985 D hypothetical protein 1306812..1306985 Escherichia coli K12 5061502 NP_415766.1 CDS kch NC_000913.2 1307040 1308293 R putative potassium channel protein (VIC family); GO_component: organelle inner membrane [goid 0019866]; GO_function: voltage-gated ion channel activity [goid 0005244]; voltage-gated potassium channel complement(1307040..1308293) Escherichia coli K12 945841 NP_415767.2 CDS yciI NC_000913.2 1308593 1308889 R predicted enzyme complement(1308593..1308889) Escherichia coli K12 949085 NP_415768.1 CDS tonB NC_000913.2 1309113 1309832 D energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane spanning protein in TonB-ExbB-ExbD complex 1309113..1309832 Escherichia coli K12 945843 NP_415769.1 CDS yciA NC_000913.2 1309872 1310270 R predicted hydrolase complement(1309872..1310270) Escherichia coli K12 946634 NP_415770.1 CDS yciB NC_000913.2 1310375 1310914 R predicted inner membrane protein complement(1310375..1310914) Escherichia coli K12 946228 NP_415771.1 CDS yciC NC_000913.2 1310944 1311687 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein complement(1310944..1311687) Escherichia coli K12 945844 NP_415772.1 CDS ompW NC_000913.2 1312044 1312682 D putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane protein W 1312044..1312682 Escherichia coli K12 945128 NP_415773.1 CDS yciE NC_000913.2 1312742 1313248 R conserved protein complement(1312742..1313248) Escherichia coli K12 946871 NP_415774.1 CDS yciF NC_000913.2 1313294 1313794 R putative structural proteins; conserved protein complement(1313294..1313794) Escherichia coli K12 947133 NP_415775.4 CDS yciG NC_000913.2 1313880 1314059 R predicted protein complement(1313880..1314059) Escherichia coli K12 947489 NP_415776.1 CDS trpA NC_000913.2 1314440 1315246 R tryptophan synthase, alpha protein; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan synthase, alpha subunit complement(1314440..1315246) Escherichia coli K12 946204 NP_415777.1 CDS trpB NC_000913.2 1315246 1316439 R tryptophan synthase, beta protein; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan synthase, beta subunit complement(1315246..1316439) Escherichia coli K12 945768 NP_415778.2 CDS trpC NC_000913.2 1316451 1317809 R N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase complement(1316451..1317809) Escherichia coli K12 945519 NP_415779.1 CDS trpD NC_000913.2 1317813 1319408 R anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase complement(1317813..1319408) Escherichia coli K12 945109 NP_415780.1 CDS trpE NC_000913.2 1319408 1320970 R anthranilate synthase component I; GO_process: tryptophan biosynthetic process [goid 0000162]; component I of anthranilate synthase complement(1319408..1320970) Escherichia coli K12 945846 NP_415781.1 CDS trpL NC_000913.2 1321062 1321106 R GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; trp operon leader peptide complement(1321062..1321106) Escherichia coli K12 945856 NP_415782.1 CDS trpH NC_000913.2 1321244 1322125 D putative enzymes; conserved protein 1321244..1322125 Escherichia coli K12 945857 NP_415783.6 CDS yciO NC_000913.2 1322122 1322742 D conserved protein 1322122..1322742 Escherichia coli K12 945854 NP_415784.1 CDS yciQ NC_000913.2 1322770 1324665 D predicted inner membrane protein 1322770..1324665 Escherichia coli K12 945850 NP_415785.1 CDS rluB NC_000913.2 1324876 1325751 D GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridylate synthase 1324876..1325751 Escherichia coli K12 945840 NP_415786.1 CDS btuR NC_000913.2 1325791 1326381 R cob(I)alamin adenolsyltransferase; GO_component: cytoplasm [goid 0005737]; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase complement(1325791..1326381) Escherichia coli K12 945839 NP_415787.1 CDS yciK NC_000913.2 1326378 1327136 R putative oxidoreductase; predicted oxoacyl-(acyl carrier protein) reductase, EmrKY-TolC system complement(1326378..1327136) Escherichia coli K12 945838 NP_415788.1 CDS sohB NC_000913.2 1327356 1328405 D putative protease; predicted inner membrane peptidase 1327356..1328405 Escherichia coli K12 945858 NP_415789.1 CDS yciN NC_000913.2 1328441 1328692 R predicted protein complement(1328441..1328692) Escherichia coli K12 945860 NP_415790.1 CDS topA NC_000913.2 1329072 1331669 D DNA topoisomerase type I, omega protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA topoisomerase I, omega subunit 1329072..1331669 Escherichia coli K12 945862 NP_415791.1 CDS cysB NC_000913.2 1331879 1332853 D positive transcriptional regulator for cysteine regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: cysteine biosynthetic process [goid 0019344]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding 1331879..1332853 Escherichia coli K12 945771 YP_588449.1 CDS ymiA NC_000913.2 1333184 1333312 D hypothetical protein 1333184..1333312 Escherichia coli K12 1450256 YP_588450.2 CDS yciX NC_000913.2 1333315 1333482 D GO_component: cytoplasm [goid 0005737]; hypothetical protein 1333315..1333482 Escherichia coli K12 1450257 NP_415792.1 CDS acnA NC_000913.2 1333855 1336530 D aconitate hydrase 1; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: anaerobic respiration [goid 0009061]; aconitate hydratase 1 1333855..1336530 Escherichia coli K12 946724 NP_415793.1 CDS ribA NC_000913.2 1336594 1337184 R GTP cyclohydrolase II complement(1336594..1337184) Escherichia coli K12 945763 NP_415794.1 CDS pgpB NC_000913.2 1337354 1338118 D non-essential phosphatidylglycerophosphate phosphatase, membrane bound; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylglycerophosphatase B 1337354..1338118 Escherichia coli K12 945863 NP_415795.1 CDS yciS NC_000913.2 1338267 1338575 D conserved inner membrane protein 1338267..1338575 Escherichia coli K12 944936 NP_415796.1 CDS yciM NC_000913.2 1338582 1339751 D putative heat shock protein; conserved protein 1338582..1339751 Escherichia coli K12 944858 NP_415797.1 CDS pyrF NC_000913.2 1339945 1340682 D GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; orotidine-5'-phosphate decarboxylase 1339945..1340682 Escherichia coli K12 947121 NP_415798.2 CDS yciH NC_000913.2 1340682 1341008 D conserved protein 1340682..1341008 Escherichia coli K12 947058 NP_415799.1 CDS osmB NC_000913.2 1341134 1341352 R osmotically inducible lipoprotein; GO_process: response to osmotic stress [goid 0006970]; lipoprotein complement(1341134..1341352) Escherichia coli K12 945866 NP_415800.1 CDS yciT NC_000913.2 1341621 1342370 R putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1341621..1342370) Escherichia coli K12 945869 YP_001165317.1 CDS yciZ NC_000913.2 1342460 1342633 R hypothetical protein complement(1342460..1342633) Escherichia coli K12 5061509 NP_415801.1 CDS gmr NC_000913.2 1342781 1344766 R modulator of Rnase II stability complement(1342781..1344766) Escherichia coli K12 945868 NP_415802.1 CDS rnb NC_000913.2 1345002 1346936 R RNase II, mRNA degradation; GO_process: RNA catabolic process [goid 0006401]; ribonuclease II complement(1345002..1346936) Escherichia coli K12 945864 NP_415803.2 CDS yciW NC_000913.2 1347004 1348131 R putative oxidoreductase; predicted oxidoreductase complement(1347004..1348131) Escherichia coli K12 945859 NP_415804.1 CDS fabI NC_000913.2 1348275 1349063 R enoyl-[acyl-carrier-protein] reductase (NADH); GO_component: cytoplasm [goid 0005737]; enoyl-[acyl-carrier-protein] reductase, NADH-dependent complement(1348275..1349063) Escherichia coli K12 945870 NP_415805.1 CDS ycjD NC_000913.2 1349431 1349784 R conserved protein complement(1349431..1349784) Escherichia coli K12 945871 NP_415806.1 CDS sapF NC_000913.2 1349852 1350658 R putative ATP-binding protein of peptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; predicted antimicrobial peptide transporter subunit complement(1349852..1350658) Escherichia coli K12 945335 NP_415807.1 CDS sapD NC_000913.2 1350660 1351652 R putative ATP-binding protein of peptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; predicted antimicrobial peptide transporter subunit complement(1350660..1351652) Escherichia coli K12 946203 NP_415808.1 CDS sapC NC_000913.2 1351652 1352542 R homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted antimicrobial peptide transporter subunit complement(1351652..1352542) Escherichia coli K12 945266 NP_415809.1 CDS sapB NC_000913.2 1352529 1353494 R homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted antimicrobial peptide transporter subunit complement(1352529..1353494) Escherichia coli K12 946191 NP_415810.1 CDS sapA NC_000913.2 1353491 1355134 R homolog of Salmonella peptide transport periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; predicted antimicrobial peptide transporter subunit complement(1353491..1355134) Escherichia coli K12 945873 NP_415811.1 CDS ymjA NC_000913.2 1355447 1355692 R predicted protein complement(1355447..1355692) Escherichia coli K12 945874 NP_415812.4 CDS puuP NC_000913.2 1355826 1357211 R putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; putrescine importer complement(1355826..1357211) Escherichia coli K12 946287 NP_415813.4 CDS puuA NC_000913.2 1357514 1358932 R putative glutamine synthetase; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: nitrogen compound metabolic process [goid 0006807]; gamma-Glu-putrescine synthase complement(1357514..1358932) Escherichia coli K12 946202 NP_415814.4 CDS puuD NC_000913.2 1359144 1359908 D probable amidotransferase subunit; GO_process: amine catabolic process [goid 0009310]; gamma-Glu-GABA hydrolase 1359144..1359908 Escherichia coli K12 945882 NP_415815.1 CDS puuR NC_000913.2 1359935 1360492 D DNA-binding transcriptional repressor 1359935..1360492 Escherichia coli K12 945886 NP_415816.1 CDS puuC NC_000913.2 1360767 1362254 D aldehyde dehydrogenase, prefers NADP over NAD; GO_component: cytoplasm [goid 0005737]; GO_process: fermentation [goid 0006113]; gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent 1360767..1362254 Escherichia coli K12 947003 NP_415817.1 CDS puuB NC_000913.2 1362256 1363536 D probable oxidoreductase; gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding 1362256..1363536 Escherichia coli K12 945072 NP_415818.1 CDS puuE NC_000913.2 1363574 1364839 D 4-aminobutyrate aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: amine catabolic process [goid 0009310]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GABA aminotransferase, PLP-dependent 1363574..1364839 Escherichia coli K12 945446 NP_415819.4 CDS pspF NC_000913.2 1364959 1365936 R psp operon transcriptional activator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(1364959..1365936) Escherichia coli K12 945683 NP_415820.1 CDS pspA NC_000913.2 1366103 1366771 D phage shock protein, inner membrane protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; regulatory protein for phage-shock-protein operon 1366103..1366771 Escherichia coli K12 945887 NP_415821.1 CDS pspB NC_000913.2 1366825 1367049 D phage shock protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator of psp operon 1366825..1367049 Escherichia coli K12 945893 NP_415822.1 CDS pspC NC_000913.2 1367049 1367408 D phage shock protein: activates phage shock-protein expression; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 1367049..1367408 Escherichia coli K12 945499 NP_415823.1 CDS pspD NC_000913.2 1367417 1367638 D phage shock protein; peripheral inner membrane phage-shock protein 1367417..1367638 Escherichia coli K12 945635 NP_415824.1 CDS pspE NC_000913.2 1367713 1368027 D phage shock protein; thiosulfate:cyanide sulfurtransferase (rhodanese) 1367713..1368027 Escherichia coli K12 945652 NP_415825.4 CDS ycjM NC_000913.2 1368240 1369919 D putative polysaccharide hydrolase; GO_process: polysaccharide catabolic process [goid 0000272]; predicted glucosyltransferase 1368240..1369919 Escherichia coli K12 945659 NP_415826.1 CDS ycjN NC_000913.2 1369933 1371225 D GO_component: periplasmic space [goid 0042597]; predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily 1369933..1371225 Escherichia coli K12 945696 NP_415827.1 CDS ycjO NC_000913.2 1371246 1372127 D putative binding-protein dependent transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 1371246..1372127 Escherichia coli K12 945888 NP_415828.1 CDS ycjP NC_000913.2 1372114 1372956 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 1372114..1372956 Escherichia coli K12 945892 NP_415829.1 CDS ycjQ NC_000913.2 1372987 1374039 D putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1372987..1374039 Escherichia coli K12 945971 NP_415830.2 CDS ycjR NC_000913.2 1374058 1374846 D predicted enzyme 1374058..1374846 Escherichia coli K12 947427 NP_415831.1 CDS ycjS NC_000913.2 1374856 1375911 D putative dehydrogenase; predicted oxidoreductase, NADH-binding 1374856..1375911 Escherichia coli K12 948589 NP_415832.1 CDS ycjT NC_000913.2 1375908 1378175 D predicted hydrolase 1375908..1378175 Escherichia coli K12 945895 NP_415833.1 CDS ycjU NC_000913.2 1378172 1378831 D putative beta-phosphoglucomutase; predicted beta-phosphoglucomutase 1378172..1378831 Escherichia coli K12 945891 b4524 CDS ycjV NC_000913.2 1378845 1379926 D predicted protein putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; join(1378845..1379801,1379801..1379926) Escherichia coli K12 4306141 NP_415835.1 CDS ompG NC_000913.2 1379971 1380876 D outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane porin 1379971..1380876 Escherichia coli K12 945889 NP_415836.1 CDS ycjW NC_000913.2 1380987 1381985 R putative LACI-type transcriptional regulator; GO_component: periplasmic space [goid 0042597]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1380987..1381985) Escherichia coli K12 945875 NP_415837.1 CDS ycjX NC_000913.2 1382141 1383538 D putative EC 2.1 enzymes; conserved protein with nucleoside triphosphate hydrolase domain 1382141..1383538 Escherichia coli K12 945872 NP_415838.1 CDS ycjF NC_000913.2 1383535 1384596 D conserved inner membrane protein 1383535..1384596 Escherichia coli K12 945878 NP_415839.1 CDS tyrR NC_000913.2 1384744 1386285 D transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, tyrosine-binding 1384744..1386285 Escherichia coli K12 945879 NP_415840.1 CDS tpx NC_000913.2 1386329 1386835 R thiol peroxidase; GO_component: periplasmic space [goid 0042597]; GO_process: xenobiotic metabolic process [goid 0006805]; lipid hydroperoxide peroxidase complement(1386329..1386835) Escherichia coli K12 945880 NP_415841.4 CDS ycjG NC_000913.2 1386954 1387919 D putative muconate cycloisomerase I; L-Ala-D/L-Glu epimerase 1386954..1387919 Escherichia coli K12 946013 NP_415842.1 CDS mpaA NC_000913.2 1387894 1388682 R putative carboxypeptidase; murein peptide amidase A complement(1387894..1388682) Escherichia coli K12 945969 b4525 CDS ymjC NC_000913.2 1388749 1388886 R pseudogene; complement(1388749..1388886) Escherichia coli K12 1450258 NP_415843.1 CDS ycjY NC_000913.2 1388957 1389889 R predicted hydrolase complement(1388957..1389889) Escherichia coli K12 945988 NP_415844.1 CDS ycjZ NC_000913.2 1390015 1390914 D putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1390015..1390914 Escherichia coli K12 945930 NP_415845.2 CDS mppA NC_000913.2 1391251 1392864 D periplasmic-binding component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan metabolic process [goid 0000270]; murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit 1391251..1392864 Escherichia coli K12 945951 NP_415846.1 CDS ynaI NC_000913.2 1392915 1393946 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(1392915..1393946) Escherichia coli K12 945898 NP_415847.1 CDS insH NC_000913.2 1394100 1395116 D IS5 transposase and trans-activator 1394100..1395116 Escherichia coli K12 945896 NP_415848.1 CDS ynaJ NC_000913.2 1395389 1395646 D predicted inner membrane protein 1395389..1395646 Escherichia coli K12 945901 NP_415849.1 CDS uspE NC_000913.2 1395696 1396646 R stress-induced protein complement(1395696..1396646) Escherichia coli K12 945904 NP_415850.1 CDS fnr NC_000913.2 1396798 1397550 R transcriptional regulation of aerobic, anaerobic respiration, osmotic balance; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth complement(1396798..1397550) Escherichia coli K12 945908 NP_415851.1 CDS ogt NC_000913.2 1397745 1398260 R O-6-alkylguanine-DNA/cysteine-protein methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; O-6-alkylguanine-DNA:cysteine-protein methyltransferase complement(1397745..1398260) Escherichia coli K12 945853 NP_415852.2 CDS abgT NC_000913.2 1398271 1399797 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cryptic aminobenzoyl-glutamate transporter complement(1398271..1399797) Escherichia coli K12 945912 NP_415853.1 CDS abgB NC_000913.2 1399834 1401279 R GO_process: carbohydrate catabolic process [goid 0016052]; predicted peptidase, aminobenzoyl-glutamate utilization protein complement(1399834..1401279) Escherichia coli K12 945950 NP_415854.4 CDS abgA NC_000913.2 1401279 1402589 R GO_process: carbohydrate catabolic process [goid 0016052]; predicted peptidase, aminobenzoyl-glutamate utilization protein complement(1401279..1402589) Escherichia coli K12 945742 NP_415855.1 CDS abgR NC_000913.2 1402765 1403673 D putative transcriptional regulator LYSR-type; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1402765..1403673 Escherichia coli K12 945831 NP_415856.1 CDS ydaL NC_000913.2 1404003 1404566 D conserved protein 1404003..1404566 Escherichia coli K12 945953 NP_415857.2 CDS ydaM NC_000913.2 1404587 1405819 R predicted diguanylate cyclase, GGDEF domain signalling protein complement(1404587..1405819) Escherichia coli K12 945909 NP_415858.1 CDS ydaN NC_000913.2 1406074 1407057 D predicted Zn(II) transporter 1406074..1407057 Escherichia coli K12 945910 NP_415859.1 CDS dbpA NC_000913.2 1407535 1408908 D ATP-dependent RNA helicase; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ATP-dependent RNA helicase, specific for 23S rRNA 1407535..1408908 Escherichia coli K12 947153 NP_415860.1 CDS ttcA NC_000913.2 1409037 1409972 R predicted C32 tRNA thiolase complement(1409037..1409972) Escherichia coli K12 948967 NP_415861.1 CDS intR NC_000913.2 1410024 1411259 R Rac prophage; integrase complement(1410024..1411259) Escherichia coli K12 946976 NP_415862.4 CDS ydaQ NC_000913.2 1411261 1411476 R putative lambdoid prophage Rac excisionase; Rac prophage; conserved protein complement(1411261..1411476) Escherichia coli K12 947399 NP_415863.1 CDS ydaC NC_000913.2 1411555 1411764 R Rac prophage; predicted protein complement(1411555..1411764) Escherichia coli K12 947504 NP_415864.1 CDS lar NC_000913.2 1411757 1411951 R restriction alleviation and modification enhancement; Rac prophage; restriction alleviation protein complement(1411757..1411951) Escherichia coli K12 945914 NP_415865.1 CDS recT NC_000913.2 1412008 1412817 R recombinase, DNA renaturation; Rac prophage; recombination and repair protein complement(1412008..1412817) Escherichia coli K12 945917 NP_415866.1 CDS recE NC_000913.2 1412810 1415410 R exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease complement(1412810..1415410) Escherichia coli K12 945918 NP_415867.1 CDS racC NC_000913.2 1415512 1415787 R RacC protein; Rac prophage; predicted protein complement(1415512..1415787) Escherichia coli K12 945920 YP_588451.1 CDS ydaE NC_000913.2 1415862 1416032 R GO_component: cytoplasm [goid 0005737]; Rac prophage; conserved protein complement(1415862..1416032) Escherichia coli K12 948959 NP_415869.2 CDS kilR NC_000913.2 1416032 1416253 R Kil protein (killing function) of lambdoid prophage Rac; Rac prophage; inhibitor of ftsZ, killing protein complement(1416032..1416253) Escherichia coli K12 945921 NP_415870.4 CDS sieB NC_000913.2 1416695 1417183 D phage superinfection exclusion protein; Rac prophage; phage superinfection exclusion protein 1416695..1417183 Escherichia coli K12 945913 NP_415872.2 CDS ydaF NC_000913.2 1417180 1417335 R GO_component: cytoplasm [goid 0005737]; Rac prophage; predicted protein complement(1417180..1417335) Escherichia coli K12 945911 NP_415873.2 CDS ydaG NC_000913.2 1417346 1417480 R Rac prophage; predicted protein complement(1417346..1417480) Escherichia coli K12 945907 NP_415874.1 CDS racR NC_000913.2 1417789 1418265 R Rac prophage; predicted DNA-binding transcriptional regulator complement(1417789..1418265) Escherichia coli K12 945899 NP_415875.1 CDS ydaS NC_000913.2 1418389 1418685 D Rac prophage; predicted DNA-binding transcriptional regulator 1418389..1418685 Escherichia coli K12 945923 NP_415876.1 CDS ydaT NC_000913.2 1418708 1419130 D Rac prophage; predicted protein 1418708..1419130 Escherichia coli K12 945924 NP_415877.1 CDS ydaU NC_000913.2 1419143 1420000 D Rac prophage; conserved protein 1419143..1420000 Escherichia coli K12 945925 NP_415878.1 CDS ydaV NC_000913.2 1420007 1420753 D putative DNA replication factor; Rac prophage; predicted DNA replication protein 1420007..1420753 Escherichia coli K12 945926 b1361 CDS ydaW NC_000913.2 1420725 1421224 D Rac prophage; predicted DNA-binding protein; 1420725..1421224 Escherichia coli K12 945927 b1362 CDS rzpR NC_000913.2 1421225 1421668 D pseudogene, Rac prophage; predicted defective peptidase putative Rac prophage endopeptidase; 1421225..1421668 Escherichia coli K12 945928 YP_588452.1 CDS rzoR NC_000913.2 1421424 1421609 D GO_component: cell outer membrane [goid 0009279]; Rac prophage; predicted lipoprotein 1421424..1421609 Escherichia coli K12 1450262 NP_415881.1 CDS trkG NC_000913.2 1421806 1423263 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; Rac prophage; potassium transporter subunit 1421806..1423263 Escherichia coli K12 945932 NP_415883.1 CDS ynaK NC_000913.2 1423401 1423664 D Rac prophage; conserved protein 1423401..1423664 Escherichia coli K12 947417 b1366 CDS ydaY NC_000913.2 1423654 1424106 D pseudogene, Rac prophage; 1423654..1424106 Escherichia coli K12 946208 b1368 CDS ynaA NC_000913.2 1424478 1425410 D Rac prophage; predicted tail protein;orf; Not classified putative alpha helix protein; 1424478..1425410 Escherichia coli K12 947543 b4570 CDS lomR NC_000913.2 1425413 1427008 D pseudogene, Rac prophage lom homolog interrupted by IS5 and N-ter deletion; join(1425413..1425622,1426819..1427008) Escherichia coli K12 4056036 NP_415888.1 CDS insH NC_000913.2 1425770 1426750 R IS5 transposase and trans-activator complement(1425770..1426750) Escherichia coli K12 945944 NP_415890.2 CDS stfR NC_000913.2 1427073 1430435 D Rac prophage; predicted tail fiber protein 1427073..1430435 Escherichia coli K12 945207 NP_415891.1 CDS tfaR NC_000913.2 1430435 1431010 D tail fiber assembly protein homolog from lambdoid prophage Rac; Rac prophage; predicted tail fiber assembly protein 1430435..1431010 Escherichia coli K12 946062 NP_415892.1 CDS pinR NC_000913.2 1431108 1431698 R Rac prophage; predicted site-specific recombinase complement(1431108..1431698) Escherichia coli K12 948973 NP_415893.1 CDS ynaE NC_000913.2 1432015 1432281 R Rac prophage; predicted DNA-binding transcriptional regulator complement(1432015..1432281) Escherichia coli K12 946078 b4638 CDS ttcC NC_000913.2 1432982 1433032 R pseudogene, prophage Rac integration site ttcA duplication; complement(1432982..1433032) Escherichia coli K12 5625564 NP_415894.4 CDS uspF NC_000913.2 1433209 1433643 R putative filament protein; stress-induced protein, ATP-binding protein complement(1433209..1433643) Escherichia coli K12 945948 NP_415895.1 CDS ompN NC_000913.2 1433784 1434917 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane pore protein N, non-specific complement(1433784..1434917) Escherichia coli K12 946313 NP_415896.1 CDS ydbK NC_000913.2 1435284 1438808 R putative oxidoreductase, Fe-S subunit; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein complement(1435284..1438808) Escherichia coli K12 946587 YP_588453.1 CDS ydbJ NC_000913.2 1439082 1439348 D GO_component: cell outer membrane [goid 0009279]; predicted protein 1439082..1439348 Escherichia coli K12 4056027 NP_415897.1 CDS hslJ NC_000913.2 1439345 1439767 R heat shock protein hslJ; GO_process: response to temperature stimulus [goid 0009266]; heat-inducible protein complement(1439345..1439767) Escherichia coli K12 946525 NP_415898.1 CDS ldhA NC_000913.2 1439878 1440867 R GO_process: fermentation [goid 0006113]; fermentative D-lactate dehydrogenase, NAD-dependent complement(1439878..1440867) Escherichia coli K12 946315 NP_415899.1 CDS ydbH NC_000913.2 1441075 1443714 D predicted protein 1441075..1443714 Escherichia coli K12 945949 NP_415900.1 CDS ynbE NC_000913.2 1443711 1443896 D predicted lipoprotein 1443711..1443896 Escherichia coli K12 945946 NP_415901.2 CDS ydbL NC_000913.2 1443904 1444230 D conserved protein 1443904..1444230 Escherichia coli K12 945943 NP_415902.1 CDS feaR NC_000913.2 1444402 1445307 R regulatory protein for 2-phenylethylamine catabolism; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amine catabolic process [goid 0009310]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(1444402..1445307) Escherichia coli K12 945941 NP_415903.4 CDS feaB NC_000913.2 1445543 1447042 D GO_process: amine catabolic process [goid 0009310]; GO_process: NAD biosynthetic process [goid 0009435]; phenylacetaldehyde dehydrogenase 1445543..1447042 Escherichia coli K12 945933 NP_415904.3 CDS tynA NC_000913.2 1447100 1449373 R copper amine oxidase (tyramine oxidase); GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amine catabolic process [goid 0009310]; tyramine oxidase, copper-requiring complement(1447100..1449373) Escherichia coli K12 945939 NP_415905.1 CDS maoC NC_000913.2 1449621 1451666 R GO_process: carbohydrate catabolic process [goid 0016052]; fused aldehyde dehydrogenase/enoyl-CoA hydratase complement(1449621..1451666) Escherichia coli K12 945954 NP_415906.1 CDS paaA NC_000913.2 1451951 1452880 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1451951..1452880 Escherichia coli K12 945833 NP_415907.1 CDS paaB NC_000913.2 1452892 1453179 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1452892..1453179 Escherichia coli K12 947595 NP_415908.1 CDS paaC NC_000913.2 1453188 1453934 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1453188..1453934 Escherichia coli K12 945956 NP_415909.3 CDS paaD NC_000913.2 1453943 1454446 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1453943..1454446 Escherichia coli K12 945959 NP_415910.1 CDS paaE NC_000913.2 1454454 1455524 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1454454..1455524 Escherichia coli K12 945962 NP_415911.1 CDS paaF NC_000913.2 1455521 1456288 D GO_process: carbohydrate catabolic process [goid 0016052]; enoyl-CoA hydratase-isomerase 1455521..1456288 Escherichia coli K12 946011 NP_415912.1 CDS paaG NC_000913.2 1456288 1457076 D GO_process: carbohydrate catabolic process [goid 0016052]; acyl-CoA hydratase 1456288..1457076 Escherichia coli K12 946263 NP_415913.1 CDS paaH NC_000913.2 1457078 1458505 D GO_process: carbohydrate catabolic process [goid 0016052]; 3-hydroxybutyryl-CoA dehydrogenase 1457078..1458505 Escherichia coli K12 945940 NP_415914.1 CDS paaI NC_000913.2 1458495 1458917 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted thioesterase 1458495..1458917 Escherichia coli K12 945265 NP_415915.1 CDS paaJ NC_000913.2 1458917 1460122 D GO_process: carbohydrate catabolic process [goid 0016052]; predicted beta-ketoadipyl CoA thiolase 1458917..1460122 Escherichia coli K12 946121 NP_415916.1 CDS paaK NC_000913.2 1460149 1461462 D GO_process: carbohydrate catabolic process [goid 0016052]; phenylacetyl-CoA ligase 1460149..1461462 Escherichia coli K12 945963 NP_415917.1 CDS paaX NC_000913.2 1461563 1462513 D GO_process: carbohydrate catabolic process [goid 0016052]; DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive 1461563..1462513 Escherichia coli K12 945966 NP_415918.1 CDS paaY NC_000913.2 1462495 1463085 D predicted hexapeptide repeat acetyltransferase 1462495..1463085 Escherichia coli K12 945965 b4492 CDS ydbA NC_000913.2 1463416 1472037 D pseudogene, autotransporter homolog interrupted by IS2 and IS30; join(1463416..1465928,1467265..1467317,1468541..1472037) Escherichia coli K12 2847750 NP_415920.1 CDS insD NC_000913.2 1465945 1466850 R KpLE2 phage-like element; IS2 insertion element transposase InsAB' complement(1465945..1466850) Escherichia coli K12 945952 NP_415921.2 CDS insC NC_000913.2 1466808 1467173 R KpLE2 phage-like element; IS2 insertion element repressor InsA complement(1466808..1467173) Escherichia coli K12 945967 NP_415922.1 CDS insI NC_000913.2 1467382 1468533 D KpLE2 phage-like element; IS30 transposase 1467382..1468533 Escherichia coli K12 945968 NP_415924.1 CDS ydbC NC_000913.2 1472245 1473105 D putative dehydrogenase; predicted oxidoreductase, NAD(P)-binding 1472245..1473105 Escherichia coli K12 945980 NP_415925.2 CDS ydbD NC_000913.2 1473168 1475474 D predicted protein 1473168..1475474 Escherichia coli K12 945983 NP_415926.4 CDS ynbA NC_000913.2 1475645 1476250 D predicted inner membrane protein 1475645..1476250 Escherichia coli K12 945973 NP_415927.1 CDS ynbB NC_000913.2 1476250 1477146 D putative phosphatidate cytidiltransferase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; predicted CDP-diglyceride synthase 1476250..1477146 Escherichia coli K12 945972 NP_415928.1 CDS ynbC NC_000913.2 1477162 1478919 D predicted hydrolase 1477162..1478919 Escherichia coli K12 945970 NP_415929.1 CDS ynbD NC_000913.2 1478933 1480225 D putative enzymes; predicted phosphatase, inner membrane protein 1478933..1480225 Escherichia coli K12 945985 NP_415930.1 CDS azoR NC_000913.2 1480279 1480884 R acyl carrier protein phosphodiesterase; NADH-azoreductase, FMN-dependent complement(1480279..1480884) Escherichia coli K12 947569 NP_415931.4 CDS hrpA NC_000913.2 1481085 1484987 D helicase, ATP-dependent; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; ATP-dependent helicase 1481085..1484987 Escherichia coli K12 948444 NP_415932.1 CDS ydcF NC_000913.2 1485259 1486059 D conserved protein 1485259..1486059 Escherichia coli K12 946215 NP_415933.1 CDS aldA NC_000913.2 1486256 1487695 D aldehyde dehydrogenase, NAD-linked; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: methylglyoxal metabolic process [goid 0009438]; GO_process: fermentation [goid 0006113]; GO_process: glycolate metabolic process [goid 0009441]; aldehyde dehydrogenase A, NAD-linked 1486256..1487695 Escherichia coli K12 945672 b4493 CDS gapC NC_000913.2 1487737 1488737 R pseudogene, GAP dehydrogenase glyceraldehyde-3-phosphate dehydrogenase (second fragment); complement(join(1487737..1487988,1487988..1488737)) Escherichia coli K12 2847738 NP_415935.2 CDS cybB NC_000913.2 1488926 1489456 D GO_function: electron carrier activity [goid 0009055]; GO_process: cytochrome complex assembly [goid 0017004]; cytochrome b561 1488926..1489456 Escherichia coli K12 947241 NP_415936.1 CDS ydcA NC_000913.2 1489701 1489874 D predicted protein 1489701..1489874 Escherichia coli K12 945986 YP_025301.1 CDS hokB NC_000913.2 1489946 1490095 R small toxic membrane polypeptide; toxic polypeptide, small complement(1489946..1490095) Escherichia coli K12 2847727 NP_415937.1 CDS mokB NC_000913.2 1489986 1490153 R regulatory peptide whose translation enables hokB expression; regulatory peptide complement(1489986..1490153) Escherichia coli K12 948820 NP_415938.1 CDS trg NC_000913.2 1490494 1492134 D GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor 1490494..1492134 Escherichia coli K12 945995 NP_415939.2 CDS ydcI NC_000913.2 1492172 1493095 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1492172..1493095) Escherichia coli K12 948865 NP_415940.1 CDS ydcJ NC_000913.2 1493312 1494655 D conserved protein 1493312..1494655 Escherichia coli K12 945991 NP_415941.5 CDS mdoD NC_000913.2 1494880 1496535 D putative glycoprotein; GO_component: periplasmic space [goid 0042597]; GO_process: response to osmotic stress [goid 0006970]; glucan biosynthesis protein, periplasmic 1494880..1496535 Escherichia coli K12 945994 NP_415943.4 CDS ydcH NC_000913.2 1496675 1496899 D predicted protein 1496675..1496899 Escherichia coli K12 945997 NP_415944.1 CDS rimL NC_000913.2 1496962 1497501 D ribosomal-protein-serine acetyltransferase; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; ribosomal-protein-L7/L12-serine acetyltransferase 1496962..1497501 Escherichia coli K12 945998 NP_415945.1 CDS ydcK NC_000913.2 1497493 1498473 R predicted enzyme complement(1497493..1498473) Escherichia coli K12 944932 NP_415946.1 CDS tehA NC_000913.2 1498597 1499589 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; potassium-tellurite ethidium and proflavin transporter 1498597..1499589 Escherichia coli K12 945852 NP_415947.1 CDS tehB NC_000913.2 1499586 1500179 D GO_process: response to drug [goid 0042493]; predicted S-adenosyl-L-methionine-dependent methyltransferase 1499586..1500179 Escherichia coli K12 945979 NP_415948.1 CDS ydcL NC_000913.2 1500481 1501149 D predicted lipoprotein 1500481..1501149 Escherichia coli K12 948203 b4578 CDS yncK NC_000913.2 1501167 1501658 R pseudogene, transposase homolog; complement(1501167..1501658) Escherichia coli K12 4056028 NP_415949.1 CDS ydcM NC_000913.2 1501681 1502889 D predicted transposase 1501681..1502889 Escherichia coli K12 944942 NP_415950.4 CDS ydcO NC_000913.2 1502929 1504104 R putative membrane transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted benzoate transporter complement(1502929..1504104) Escherichia coli K12 947247 NP_415951.1 CDS ydcN NC_000913.2 1504196 1504732 D predicted DNA-binding transcriptional regulator 1504196..1504732 Escherichia coli K12 946000 NP_415952.2 CDS ydcP NC_000913.2 1504805 1506766 D putative protease; predicted peptidase 1504805..1506766 Escherichia coli K12 945993 NP_415953.1 CDS yncJ NC_000913.2 1506858 1507088 R predicted protein complement(1506858..1507088) Escherichia coli K12 945990 NP_415954.2 CDS yncN NC_000913.2 1507310 1507486 D predicted protein 1507310..1507486 Escherichia coli K12 945989 NP_415955.2 CDS ydcQ NC_000913.2 1507532 1507948 D predicted DNA-binding transcriptional regulator 1507532..1507948 Escherichia coli K12 946001 NP_415956.1 CDS ydcR NC_000913.2 1508027 1509433 D multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system; GO_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; fused predicted DNA-binding transcriptional regulator/predicted amino transferase 1508027..1509433 Escherichia coli K12 946004 NP_415957.1 CDS ydcS NC_000913.2 1509678 1510823 D periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; predicted spermidine/putrescine transporter subunit 1509678..1510823 Escherichia coli K12 946005 NP_415958.1 CDS ydcT NC_000913.2 1510841 1511854 D ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; predicted spermidine/putrescine transporter subunit 1510841..1511854 Escherichia coli K12 946007 NP_415959.1 CDS ydcU NC_000913.2 1511855 1512796 D membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted spermidine/putrescine transporter subunit 1511855..1512796 Escherichia coli K12 945976 NP_415960.1 CDS ydcV NC_000913.2 1512786 1513580 D membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted spermidine/putrescine transporter subunit 1512786..1513580 Escherichia coli K12 945903 NP_415961.1 CDS ydcW NC_000913.2 1513602 1515026 D putative aldehyde dehydrogenase; medium chain aldehyde dehydrogenase 1513602..1515026 Escherichia coli K12 945876 YP_001165318.1 CDS yncL NC_000913.2 1515123 1515218 R hypothetical protein complement(1515123..1515218) Escherichia coli K12 5061503 NP_415962.2 CDS ydcX NC_000913.2 1515413 1515586 D predicted inner membrane protein 1515413..1515586 Escherichia coli K12 945936 NP_415963.1 CDS ydcY NC_000913.2 1515672 1515905 D predicted protein 1515672..1515905 Escherichia coli K12 945916 NP_415964.1 CDS ydcZ NC_000913.2 1515906 1516355 R predicted inner membrane protein complement(1515906..1516355) Escherichia coli K12 946008 NP_415965.1 CDS yncA NC_000913.2 1516352 1516870 R GO_process: response to drug [goid 0042493]; predicted acyltransferase with acyl-CoA N-acyltransferase domain complement(1516352..1516870) Escherichia coli K12 946010 NP_415966.5 CDS yncB NC_000913.2 1517027 1518088 D putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1517027..1518088 Escherichia coli K12 946012 NP_415967.2 CDS yncC NC_000913.2 1518286 1518951 D GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1518286..1518951 Escherichia coli K12 946014 NP_415968.1 CDS yncD NC_000913.2 1518987 1521089 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted iron outer membrane transporter complement(1518987..1521089) Escherichia coli K12 946015 NP_415969.1 CDS yncE NC_000913.2 1521331 1522392 D putative receptor; conserved protein 1521331..1522392 Escherichia coli K12 946006 NP_415970.4 CDS ansP NC_000913.2 1522505 1524004 R L-asparagine permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: asparagine biosynthetic process [goid 0006529]; L-asparagine transporter complement(1522505..1524004) Escherichia coli K12 946019 NP_415971.1 CDS yncG NC_000913.2 1524271 1524888 D predicted enzyme 1524271..1524888 Escherichia coli K12 946023 NP_415972.1 CDS yncH NC_000913.2 1524964 1525176 D predicted protein 1524964..1525176 Escherichia coli K12 946024 b1456 CDS rhsE NC_000913.2 1525926 1527962 D pseudogene, rhsE element core protein RhsE; 1525926..1527962 Escherichia coli K12 946026 NP_415974.1 CDS ydcD NC_000913.2 1527946 1528428 D predicted protein 1527946..1528428 Escherichia coli K12 946958 b1459 CDS yncI NC_000913.2 1528610 1529663 D predicted protein; join(1528610..1529347,1529349..1529663) Escherichia coli K12 945121 NP_415977.1 CDS ydcC NC_000913.2 1529840 1530976 D H repeat-associated protein (ORF-H); conserved protein 1529840..1530976 Escherichia coli K12 947435 NP_415978.1 CDS pptA NC_000913.2 1531076 1531309 D 4-oxalocrotonate tautomerase 1531076..1531309 Escherichia coli K12 945731 NP_415979.2 CDS yddH NC_000913.2 1531306 1531875 R conserved protein complement(1531306..1531875) Escherichia coli K12 946192 NP_415980.1 CDS nhoA NC_000913.2 1532048 1532893 D GO_process: metabolic process [goid 0008152]; N-hydroxyarylamine O-acetyltransferase 1532048..1532893 Escherichia coli K12 947251 NP_415981.1 CDS yddE NC_000913.2 1532989 1533882 R conserved protein complement(1532989..1533882) Escherichia coli K12 944782 NP_415982.1 CDS narV NC_000913.2 1533961 1534641 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 2 (NRZ), gamma subunit complement(1533961..1534641) Escherichia coli K12 946029 NP_415983.1 CDS narW NC_000913.2 1534638 1535333 R GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; nitrate reductase 2 (NRZ), delta subunit (assembly subunit) complement(1534638..1535333) Escherichia coli K12 946032 NP_415984.1 CDS narY NC_000913.2 1535333 1536877 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 2 (NRZ), beta subunit complement(1535333..1536877) Escherichia coli K12 946034 NP_415985.1 CDS narZ NC_000913.2 1536874 1540614 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 2 (NRZ), alpha subunit complement(1536874..1540614) Escherichia coli K12 945999 NP_415986.1 CDS narU NC_000913.2 1540696 1542084 R nitrite extrusion protein 2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrate/nitrite transporter complement(1540696..1542084) Escherichia coli K12 945799 NP_415987.1 CDS yddJ NC_000913.2 1542408 1542743 R predicted protein complement(1542408..1542743) Escherichia coli K12 945955 b1471 CDS yddK NC_000913.2 1542782 1543771 R pseudogene putative glycoportein; GO_process: glycoprotein biosynthetic process [goid 0009101]; complement(1542782..1543771) Escherichia coli K12 947312 b1472 CDS yddL NC_000913.2 1543774 1544052 R predicted lipoprotein;putative membrane; Not classified putative outer membrane porin protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; complement(1543774..1544052) Escherichia coli K12 945737 NP_415990.5 CDS yddG NC_000913.2 1544312 1545193 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted methyl viologen efflux pump complement(1544312..1545193) Escherichia coli K12 945942 NP_415991.1 CDS fdnG NC_000913.2 1545425 1548472 D formate dehydrogenase-N, nitrate-inducible, alpha subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-N, alpha subunit, nitrate-inducible 1545425..1548472 Escherichia coli K12 946035 NP_415992.1 CDS fdnH NC_000913.2 1548485 1549369 D formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible 1548485..1549369 Escherichia coli K12 948794 NP_415993.1 CDS fdnI NC_000913.2 1549362 1550015 D formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible 1549362..1550015 Escherichia coli K12 946038 NP_415994.4 CDS yddM NC_000913.2 1550422 1550706 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(1550422..1550706) Escherichia coli K12 946040 NP_415995.4 CDS adhP NC_000913.2 1550852 1551862 R alcohol dehydrogenase; GO_process: anaerobic respiration [goid 0009061]; ethanol-active dehydrogenase/acetaldehyde-active reductase complement(1550852..1551862) Escherichia coli K12 946036 NP_415996.2 CDS maeA NC_000913.2 1551996 1553693 R NAD-linked malate dehydrogenase (malic enzyme); GO_process: gluconeogenesis [goid 0006094]; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) complement(1551996..1553693) Escherichia coli K12 946031 NP_415997.1 CDS sra NC_000913.2 1553850 1553987 R 30S ribosomal subunit protein S22; stationary phase-induced ribosome-associated protein; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S22 complement(1553850..1553987) Escherichia coli K12 946030 NP_415998.4 CDS bdm NC_000913.2 1554089 1554304 R biofilm-dependent modulation protein complement(1554089..1554304) Escherichia coli K12 946041 NP_415999.1 CDS osmC NC_000913.2 1554649 1555080 D osmotically inducible protein; GO_process: response to osmotic stress [goid 0006970]; osmotically inducible, stress-inducible membrane protein 1554649..1555080 Escherichia coli K12 946043 NP_416000.1 CDS ddpF NC_000913.2 1555136 1556062 R ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; D-ala-D-ala transporter subunit complement(1555136..1556062) Escherichia coli K12 946020 NP_416001.1 CDS ddpD NC_000913.2 1556055 1557041 R ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; D-ala-D-ala transporter subunit complement(1556055..1557041) Escherichia coli K12 946002 NP_416002.1 CDS ddpC NC_000913.2 1557038 1557934 R membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; D-ala-D-ala transporter subunit complement(1557038..1557934) Escherichia coli K12 946028 NP_416003.1 CDS ddpB NC_000913.2 1557931 1558953 R membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; D-ala-D-ala transporter subunit complement(1557931..1558953) Escherichia coli K12 946044 NP_416004.1 CDS ddpA NC_000913.2 1558955 1560505 R periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; D-ala-D-a la transporter subunit complement(1558955..1560505) Escherichia coli K12 946052 NP_416005.1 CDS ddpX NC_000913.2 1560519 1561100 R GO_component: periplasmic space [goid 0042597]; GO_process: response to osmotic stress [goid 0006970]; D-ala-D-ala dipeptidase, Zn-dependent complement(1560519..1561100) Escherichia coli K12 945532 NP_416006.4 CDS dos NC_000913.2 1561358 1563757 R cAMP phosphodiesterase, heme-regulated complement(1561358..1563757) Escherichia coli K12 945815 NP_416007.3 CDS yddV NC_000913.2 1563782 1565164 R predicted diguanylate cyclase complement(1563782..1565164) Escherichia coli K12 945835 NP_416008.1 CDS yddW NC_000913.2 1565528 1566847 R predicted liprotein complement(1565528..1566847) Escherichia coli K12 945975 NP_416009.1 CDS gadC NC_000913.2 1566978 1568513 R acid sensitivity protein, putative transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted glutamate:gamma-aminobutyric acid antiporter complement(1566978..1568513) Escherichia coli K12 946057 NP_416010.1 CDS gadB NC_000913.2 1568669 1570069 R glutamate decarboxylase isozyme; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amino acid metabolic process [goid 0006520]; glutamate decarboxylase B, PLP-dependent complement(1568669..1570069) Escherichia coli K12 946058 NP_416011.1 CDS pqqL NC_000913.2 1570431 1573226 R putative zinc protease; GO_component: cytoplasm [goid 0005737]; predicted peptidase complement(1570431..1573226) Escherichia coli K12 946059 NP_416012.1 CDS yddB NC_000913.2 1573271 1575643 R predicted porin protein complement(1573271..1575643) Escherichia coli K12 945961 NP_416013.1 CDS yddA NC_000913.2 1575681 1577366 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component complement(1575681..1577366) Escherichia coli K12 945945 NP_416014.4 CDS ydeM NC_000913.2 1577657 1578814 R putative enzyme; conserved protein complement(1577657..1578814) Escherichia coli K12 945981 NP_416015.2 CDS ydeN NC_000913.2 1578866 1580548 R putative sulfatase; GO_process: sulfur metabolic process [goid 0006790]; conserved protein complement(1578866..1580548) Escherichia coli K12 945957 NP_416016.1 CDS ydeO NC_000913.2 1580950 1581711 R putative ARAC-type regulatory protein; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional acfivator complement(1580950..1581711) Escherichia coli K12 945922 NP_416018.1 CDS ydeP NC_000913.2 1582231 1584510 R putative oxidoreductase, major subunit; predicted oxidoreductase complement(1582231..1584510) Escherichia coli K12 946055 NP_416019.1 CDS ydeQ NC_000913.2 1584844 1585758 R putative adhesin; similar to FimH protein; predicted fimbrial-like adhesin protein complement(1584844..1585758) Escherichia coli K12 946050 NP_416020.1 CDS ydeR NC_000913.2 1585817 1586320 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(1585817..1586320) Escherichia coli K12 946049 NP_416021.1 CDS ydeS NC_000913.2 1586333 1586863 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(1586333..1586863) Escherichia coli K12 946047 b1505 CDS ydeT NC_000913.2 1586877 1588103 R pseudogene putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; complement(1586877..1588103) Escherichia coli K12 946042 b1506 CDS yneL NC_000913.2 1588358 1588560 R predicted transcriptional regulator; complement(join(1588358..1588450,1588450..1588560)) Escherichia coli K12 946063 NP_416024.1 CDS hipA NC_000913.2 1588878 1590200 R persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: DNA metabolic process [goid 0006259]; regulator with hipB complement(1588878..1590200) Escherichia coli K12 946064 NP_416025.1 CDS hipB NC_000913.2 1590200 1590466 R persistence to inhibition of murein or DNA biosynthesis; regulatory protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: DNA metabolic process [goid 0006259]; DNA-binding transcriptional regulator complement(1590200..1590466) Escherichia coli K12 946065 NP_416026.1 CDS ydeU NC_000913.2 1590689 1592089 R putative ATP-binding component of a transport system and adhesin protein; conserved protein complement(1590689..1592089) Escherichia coli K12 947796 NP_416027.1 CDS ydeK NC_000913.2 1592133 1596110 R predicted lipoprotein complement(1592133..1596110) Escherichia coli K12 947790 NP_416028.3 CDS lsrK NC_000913.2 1596641 1598233 R autoinducer-2 (AI-2) kinase complement(1596641..1598233) Escherichia coli K12 946069 NP_416029.1 CDS lsrR NC_000913.2 1598312 1599265 R GO_function: transcriptional repressor activity [goid 0016564]; lsr operon transcriptional repressor complement(1598312..1599265) Escherichia coli K12 946070 NP_416030.1 CDS lsrA NC_000913.2 1599514 1601049 D autoinducer-2 (AI-2)-transporting ATPase; GO_component: cytoplasm [goid 0005737]; fused AI2 transporter subunits of ABC superfamily: ATP-binding components 1599514..1601049 Escherichia coli K12 945680 NP_416031.1 CDS lsrC NC_000913.2 1601043 1602071 D autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; AI2 transporter 1601043..1602071 Escherichia coli K12 946105 NP_416032.1 CDS lsrD NC_000913.2 1602071 1603063 D autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; AI2 transporter 1602071..1603063 Escherichia coli K12 946264 NP_416033.1 CDS lsrB NC_000913.2 1603075 1604097 D periplasmic autoinducer-2 (AI-2) binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; AI2 transporter 1603075..1604097 Escherichia coli K12 945418 NP_416034.1 CDS lsrF NC_000913.2 1604124 1604999 D putative autoinducer-2 (AI-2) aldolase 1604124..1604999 Escherichia coli K12 946071 NP_416035.1 CDS lsrG NC_000913.2 1605023 1605313 D autoinducer-2 (AI-2) modifying protein LsrG 1605023..1605313 Escherichia coli K12 946073 NP_416036.1 CDS tam NC_000913.2 1605370 1606128 D trans-aconitate 2-methyltransferase; GO_component: cytoplasm [goid 0005737]; trans-aconitate methyltransferase 1605370..1606128 Escherichia coli K12 946074 NP_416037.2 CDS yneE NC_000913.2 1606132 1607046 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(1606132..1607046) Escherichia coli K12 946188 YP_025302.1 CDS uxaB NC_000913.2 1607253 1608704 R altronate oxidoreductase; GO_process: carbohydrate catabolic process [goid 0016052]; altronate oxidoreductase, NAD-dependent complement(1607253..1608704) Escherichia coli K12 945542 NP_416039.1 CDS yneF NC_000913.2 1608931 1609878 R predicted diguanylate cyclase complement(1608931..1609878) Escherichia coli K12 947422 NP_416040.1 CDS yneG NC_000913.2 1609990 1610349 R conserved protein complement(1609990..1610349) Escherichia coli K12 946171 NP_416041.1 CDS yneH NC_000913.2 1610349 1611275 R putative glutaminase; GO_process: amino acid catabolic process [goid 0009063]; predicted glutaminase complement(1610349..1611275) Escherichia coli K12 944973 NP_416042.2 CDS yneI NC_000913.2 1611339 1612727 R putative aldehyde dehydrogenase; predicted aldehyde dehydrogenase complement(1611339..1612727) Escherichia coli K12 947440 NP_416043.1 CDS yneJ NC_000913.2 1612828 1613709 D putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1612828..1613709 Escherichia coli K12 946079 NP_416044.1 CDS yneK NC_000913.2 1613787 1614902 D predicted protein 1613787..1614902 Escherichia coli K12 946080 NP_416045.1 CDS ydeA NC_000913.2 1615052 1616242 D L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS family); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity [goid 0015524]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted arabinose transporter 1615052..1616242 Escherichia coli K12 947218 NP_416046.1 CDS marC NC_000913.2 1616267 1616932 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted transporter complement(1616267..1616932) Escherichia coli K12 947132 NP_416047.4 CDS marR NC_000913.2 1617144 1617578 D multiple antibiotic resistance protein; repressor of mar operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor of multiple antibiotic resistance 1617144..1617578 Escherichia coli K12 945825 NP_416048.2 CDS marA NC_000913.2 1617598 1617981 D multiple antibiotic resistance; transcriptional activator of defense systems; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual activator of multiple antibiotic resistance 1617598..1617981 Escherichia coli K12 947613 NP_416049.1 CDS marB NC_000913.2 1618013 1618231 D multiple antibiotic resistance protein; GO_process: response to drug [goid 0042493]; GO_process: xenobiotic metabolic process [goid 0006805]; predicted protein 1618013..1618231 Escherichia coli K12 946184 NP_416050.4 CDS eamA NC_000913.2 1618262 1619161 R amino acid metabolite efflux pump; cysteine and O-acetyl-L-serine efflux system complement(1618262..1619161) Escherichia coli K12 946081 NP_416051.1 CDS ydeE NC_000913.2 1619356 1620543 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1619356..1620543 Escherichia coli K12 946083 YP_001165319.1 CDS yneM NC_000913.2 1620670 1620765 D hypothetical protein 1620670..1620765 Escherichia coli K12 5061497 NP_416052.1 CDS ydeH NC_000913.2 1620984 1621874 R conserved protein complement(1620984..1621874) Escherichia coli K12 946075 NP_416054.1 CDS ydeI NC_000913.2 1622129 1622521 R conserved protein complement(1622129..1622521) Escherichia coli K12 946068 NP_416055.1 CDS ydeJ NC_000913.2 1622797 1623315 D conserved protein 1622797..1623315 Escherichia coli K12 946067 NP_416056.1 CDS dcp NC_000913.2 1623359 1625404 R dipeptidyl carboxypeptidase II complement(1623359..1625404) Escherichia coli K12 946084 NP_416057.1 CDS ydfG NC_000913.2 1625541 1626287 D putative oxidoreductase; L-allo-threonine dehydrogenase, NAD(P)-binding 1625541..1626287 Escherichia coli K12 946085 NP_416058.1 CDS ydfH NC_000913.2 1626376 1627062 D GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1626376..1627062 Escherichia coli K12 946087 NP_416059.1 CDS ydfZ NC_000913.2 1627239 1627442 D conserved protein 1627239..1627442 Escherichia coli K12 948796 NP_416060.1 CDS ydfI NC_000913.2 1627477 1628937 R putative oxidoreductase; predicted mannonate dehydrogenase complement(1627477..1628937) Escherichia coli K12 945861 b4600 CDS ydfJ NC_000913.2 1629026 1650862 R Qin prophage; predicted protein putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; complement(join(1629026..1630309,1650779..1650862)) Escherichia coli K12 944802 NP_416062.1 CDS ydfK NC_000913.2 1631063 1631329 D Qin prophage; predicted DNA-binding transcriptional regulator 1631063..1631329 Escherichia coli K12 947451 NP_416063.1 CDS pinQ NC_000913.2 1631646 1632236 D Qin prophage; predicted site-specific recombinase 1631646..1632236 Escherichia coli K12 946088 NP_416064.1 CDS tfaQ NC_000913.2 1632334 1632909 R tail fiber assembly protein homolog from lambdoid prophage Qin; Qin prophage; predicted tail fibre assembly protein complement(1632334..1632909) Escherichia coli K12 946060 NP_416065.1 CDS ydfN NC_000913.2 1632909 1633871 R Qin prophage; predicted side tail fibre assembly protein complement(1632909..1633871) Escherichia coli K12 946098 b1548 CDS nohA NC_000913.2 1633864 1634391 R Qin prophage; predicted packaging protein;IS, phage, Tn; Phage-related functions and prophages DNA packaging protein NU1 homolog from lambdoid prophage Qin; complement(1633864..1634391) Escherichia coli K12 946021 YP_588454.1 CDS ynfO NC_000913.2 1634780 1635013 D hypothetical protein, Qin prophage 1634780..1635013 Escherichia coli K12 1450267 NP_416067.2 CDS ydfO NC_000913.2 1635071 1635481 D Qin prophage; predicted protein 1635071..1635481 Escherichia coli K12 945992 NP_416068.2 CDS gnsB NC_000913.2 1635633 1635806 R Qin prophage; predicted protein complement(1635633..1635806) Escherichia coli K12 946054 NP_416069.2 CDS ynfN NC_000913.2 1635978 1636133 R Qin prophage; predicted protein complement(1635978..1636133) Escherichia coli K12 946097 NP_416070.1 CDS cspI NC_000913.2 1636479 1636691 R cold shock-like protein; Qin prophage; cold shock protein complement(1636479..1636691) Escherichia coli K12 946099 NP_416071.1 CDS ydfP NC_000913.2 1637054 1637551 R Qin prophage; conserved protein complement(1637054..1637551) Escherichia coli K12 946101 NP_416072.1 CDS ydfQ NC_000913.2 1637548 1638081 R Qin prophage; predicted lysozyme complement(1637548..1638081) Escherichia coli K12 946100 NP_416073.1 CDS ydfR NC_000913.2 1638078 1638389 R Qin prophage; predicted protein complement(1638078..1638389) Escherichia coli K12 946095 NP_416074.4 CDS essQ NC_000913.2 1638394 1638609 R Qin prophage; predicted S lysis protein complement(1638394..1638609) Escherichia coli K12 946093 NP_416075.1 CDS cspB NC_000913.2 1639363 1639578 R Qin prophage; cold shock protein complement(1639363..1639578) Escherichia coli K12 946091 NP_416076.1 CDS cspF NC_000913.2 1639879 1640091 D Qin prophage; cold shock protein 1639879..1640091 Escherichia coli K12 946090 NP_416077.4 CDS ydfT NC_000913.2 1640513 1641265 R Qin prophage; predicted antitermination protein Q complement(1640513..1641265) Escherichia coli K12 946103 NP_416078.3 CDS ydfU NC_000913.2 1641279 1642226 R Qin prophage; predicted protein complement(1641279..1642226) Escherichia coli K12 946108 NP_416079.1 CDS rem NC_000913.2 1642675 1642926 R Qin prophage; predicted protein complement(1642675..1642926) Escherichia coli K12 946109 NP_416080.1 CDS hokD NC_000913.2 1643143 1643298 R polypeptide destructive to membrane potential hokD (relF) regulatory elements are deleted, and the gene is fused to the relBE transcript; evolutionary relic?; Qin prophage; small toxic polypeptide complement(1643143..1643298) Escherichia coli K12 948616 NP_416081.1 CDS relE NC_000913.2 1643370 1643657 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; Qin prophage; toxin of the RelE-RelB toxin-antitoxin system complement(1643370..1643657) Escherichia coli K12 947549 NP_416082.1 CDS relB NC_000913.2 1643657 1643896 R negative regulator of translation; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor complement(1643657..1643896) Escherichia coli K12 948308 NP_416083.1 CDS ydfV NC_000913.2 1643921 1644226 D Qin prophage; predicted protein 1643921..1644226 Escherichia coli K12 948801 NP_416084.1 CDS flxA NC_000913.2 1644429 1644761 D Qin prophage; predicted protein 1644429..1644761 Escherichia coli K12 947392 NP_416085.2 CDS ydfW NC_000913.2 1645146 1645373 R Qin prophage; predicted protein complement(1645146..1645373) Escherichia coli K12 946111 NP_416086.1 CDS ydfX NC_000913.2 1645370 1645660 R Qin prophage; predicted protein complement(1645370..1645660) Escherichia coli K12 946112 NP_416087.1 CDS dicC NC_000913.2 1645644 1645874 R regulator of dicB; Qin prophage; DNA-binding transcriptional regulator for DicB complement(1645644..1645874) Escherichia coli K12 946120 NP_416088.1 CDS dicA NC_000913.2 1645958 1646365 D regulator of dicB; Qin prophage; predicted regulator for DicB 1645958..1646365 Escherichia coli K12 946241 NP_416089.1 CDS ydfA NC_000913.2 1646532 1646687 D Qin prophage; predicted protein 1646532..1646687 Escherichia coli K12 946082 NP_416090.2 CDS ydfB NC_000913.2 1646689 1646817 D Qin prophage; predicted protein 1646689..1646817 Escherichia coli K12 946176 b1573 CDS rzpQ NC_000913.2 1646910 1647005 D Qin prophage; predicted protein; 1646910..1647005 Escherichia coli K12 946107 NP_416092.1 CDS dicB NC_000913.2 1647633 1647821 D inhibition of cell division; Qin prophage; cell division inhibition protein 1647633..1647821 Escherichia coli K12 946110 NP_416093.1 CDS ydfD NC_000913.2 1647818 1648009 D Qin prophage; predicted protein 1647818..1648009 Escherichia coli K12 946102 b1577 CDS ydfE NC_000913.2 1648102 1648866 D Qin prophage; predicted protein; 1648102..1648866 Escherichia coli K12 946113 b1578 CDS insD NC_000913.2 1648869 1649561 D KpLE2 phage-like element; IS2 insertion element transposase InsAB';IS, phage, Tn; Transposon-related functions;8.3 extrachromosomal; transposon related; 1648869..1649561 Escherichia coli K12 946118 b1579 CDS intQ NC_000913.2 1649575 1650732 D pseudogene, Qin prophage; predicted defective integrase; 1649575..1650732 Escherichia coli K12 946130 NP_416097.1 CDS rspB NC_000913.2 1650920 1651939 R starvation sensing protein; GO_process: response to starvation [goid 0042594]; predicted oxidoreductase, Zn-dependent and NAD(P)-binding complement(1650920..1651939) Escherichia coli K12 946127 NP_416098.1 CDS rspA NC_000913.2 1651951 1653165 R starvation sensing protein; GO_process: response to starvation [goid 0042594]; predicted dehydratase complement(1651951..1653165) Escherichia coli K12 946126 NP_416099.1 CDS ynfA NC_000913.2 1653371 1653697 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(1653371..1653697) Escherichia coli K12 946125 NP_416100.1 CDS ynfB NC_000913.2 1653832 1654173 D predicted protein 1653832..1654173 Escherichia coli K12 946119 NP_416101.1 CDS speG NC_000913.2 1654208 1654768 D GO_process: polyamine biosynthetic process [goid 0006596]; spermidine N1-acetyltransferase 1654208..1654768 Escherichia coli K12 946117 NP_416102.2 CDS ynfC NC_000913.2 1654771 1655481 R predicted protein complement(1654771..1655481) Escherichia coli K12 946131 NP_416103.2 CDS ynfD NC_000913.2 1655589 1655894 D predicted protein 1655589..1655894 Escherichia coli K12 946133 NP_416104.1 CDS ynfE NC_000913.2 1656093 1658519 D oxidoreductase subunit 1656093..1658519 Escherichia coli K12 946135 NP_416105.3 CDS ynfF NC_000913.2 1658607 1661003 D oxidoreductase subunit 1658607..1661003 Escherichia coli K12 945268 NP_416106.1 CDS ynfG NC_000913.2 1661014 1661631 D oxidoreductase, Fe-S subunit 1661014..1661631 Escherichia coli K12 945638 NP_416107.1 CDS ynfH NC_000913.2 1661633 1662487 D GO_component: peptidoglycan-based cell wall [goid 0009274]; oxidoreductase, membrane subunit 1661633..1662487 Escherichia coli K12 945822 NP_416108.2 CDS dmsD NC_000913.2 1662530 1663144 D twin-argninine leader-binding protein for DmsA and TorA 1662530..1663144 Escherichia coli K12 945987 NP_416109.2 CDS clcB NC_000913.2 1663339 1664595 D predicted voltage-gated chloride channel 1663339..1664595 Escherichia coli K12 947179 NP_416110.4 CDS ynfK NC_000913.2 1664548 1665243 R GO_process: biotin biosynthetic process [goid 0009102]; predicted dethiobiotin synthetase complement(1664548..1665243) Escherichia coli K12 944927 NP_416111.1 CDS dgsA NC_000913.2 1665368 1666588 R putative NAGC-like transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: polysaccharide biosynthetic process [goid 0000271]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(1665368..1666588) Escherichia coli K12 945510 NP_416112.1 CDS ynfL NC_000913.2 1666723 1667616 R putative transcriptional regulator LYSR-type; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(1666723..1667616) Escherichia coli K12 946136 NP_416113.1 CDS ynfM NC_000913.2 1667723 1668976 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1667723..1668976 Escherichia coli K12 946138 NP_416114.2 CDS asr NC_000913.2 1669400 1669708 D acid shock protein; GO_process: response to pH [goid 0009268]; acid shock-inducible periplasmic protein 1669400..1669708 Escherichia coli K12 945103 YP_001165320.1 CDS ydgU NC_000913.2 1669801 1669884 D hypothetical protein 1669801..1669884 Escherichia coli K12 5061510 NP_416115.1 CDS ydgD NC_000913.2 1669984 1670805 D predicted peptidase 1669984..1670805 Escherichia coli K12 946436 NP_416116.1 CDS mdtI NC_000913.2 1670844 1671173 R possible chaperone; multidrug efflux system transporter complement(1670844..1671173) Escherichia coli K12 947333 NP_416117.1 CDS mdtJ NC_000913.2 1671160 1671525 R possible chaperone; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system transporter complement(1671160..1671525) Escherichia coli K12 946139 NP_416118.1 CDS tqsA NC_000913.2 1671937 1672971 D putative transport protein; predicted inner membrane protein 1671937..1672971 Escherichia coli K12 946142 NP_416119.1 CDS pntB NC_000913.2 1672996 1674384 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; pyridine nucleotide transhydrogenase, beta subunit complement(1672996..1674384) Escherichia coli K12 946144 NP_416120.1 CDS pntA NC_000913.2 1674395 1675927 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; pyridine nucleotide transhydrogenase, alpha subunit complement(1674395..1675927) Escherichia coli K12 946628 NP_416121.1 CDS ydgH NC_000913.2 1676451 1677395 D predicted protein 1676451..1677395 Escherichia coli K12 945117 NP_416122.1 CDS ydgI NC_000913.2 1677581 1678963 D putative arginine/ornithine antiporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted arginine/ornithine antiporter transporter 1677581..1678963 Escherichia coli K12 945159 NP_416123.1 CDS folM NC_000913.2 1679000 1679722 D putative oxidoreductase; dihydrofolate reductase isozyme 1679000..1679722 Escherichia coli K12 949096 NP_416124.1 CDS ydgC NC_000913.2 1679719 1680054 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein associated with alginate biosynthesis complement(1679719..1680054) Escherichia coli K12 945156 NP_416125.2 CDS rstA NC_000913.2 1680183 1680902 D response transcriptional regulatory protein (RstB sensor); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with RstB 1680183..1680902 Escherichia coli K12 946199 NP_416126.1 CDS rstB NC_000913.2 1680906 1682207 D sensor histidine protein kinase (RstA regulator); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with RstA 1680906..1682207 Escherichia coli K12 948870 NP_416127.1 CDS tus NC_000913.2 1682283 1683212 D DNA-binding protein; inhibition of replication at Ter sites; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; inhibitor of replication at Ter, DNA-binding protein 1682283..1683212 Escherichia coli K12 945135 NP_416128.1 CDS fumC NC_000913.2 1683209 1684612 R fumarase C= fumarate hydratase Class II; isozyme; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate hydratase (fumarase C),aerobic Class II complement(1683209..1684612) Escherichia coli K12 946147 NP_416129.1 CDS fumA NC_000913.2 1684755 1686401 R fumarase A = fumarate hydratase Class I; aerobic isozyme; GO_process: tricarboxylic acid cycle [goid 0006099]; fumarate hydratase (fumarase A), aerobic Class I complement(1684755..1686401) Escherichia coli K12 946826 NP_416130.3 CDS manA NC_000913.2 1686600 1687775 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; mannose-6-phosphate isomerase 1686600..1687775 Escherichia coli K12 944840 NP_416131.1 CDS ydgA NC_000913.2 1687876 1689384 D conserved protein 1687876..1689384 Escherichia coli K12 946172 NP_416132.2 CDS uidC NC_000913.2 1689610 1690875 R membrane-associated protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane porin protein complement(1689610..1690875) Escherichia coli K12 944820 b1616 CDS uidB NC_000913.2 1690914 1692287 R glucuronide transporter;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols glucuronide permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; complement(1690914..1692287) Escherichia coli K12 947484 NP_416134.1 CDS uidA NC_000913.2 1692284 1694095 R GO_process: carbohydrate catabolic process [goid 0016052]; beta-D-glucuronidase complement(1692284..1694095) Escherichia coli K12 946149 NP_416135.1 CDS uidR NC_000913.2 1694486 1695076 R repressor for uid operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(1694486..1695076) Escherichia coli K12 946150 NP_416136.1 CDS hdhA NC_000913.2 1695297 1696064 R NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids; GO_component: cytoplasm [goid 0005737]; 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent complement(1695297..1696064) Escherichia coli K12 946151 NP_416137.1 CDS malI NC_000913.2 1696176 1697204 R maltose regulon regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(1696176..1697204) Escherichia coli K12 947104 NP_416138.1 CDS malX NC_000913.2 1697379 1698971 D PTS system, maltose and glucose-specific IIABC component; GO_process: carbohydrate catabolic process [goid 0016052]; fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component 1697379..1698971 Escherichia coli K12 946009 NP_416139.1 CDS malY NC_000913.2 1698981 1700153 D cystathionine beta-lyase; maltose regulon modulator; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon 1698981..1700153 Escherichia coli K12 945937 NP_416140.1 CDS add NC_000913.2 1700257 1701258 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; adenosine deaminase 1700257..1701258 Escherichia coli K12 945851 NP_416141.4 CDS ydgJ NC_000913.2 1701292 1702332 R predicted oxidoreductase complement(1701292..1702332) Escherichia coli K12 947164 YP_025303.1 CDS blr NC_000913.2 1702575 1702700 D beta-lactam resistance protein; beta-lactam resistance membrane protein 1702575..1702700 Escherichia coli K12 2847682 NP_416142.1 CDS cnu NC_000913.2 1702973 1703188 D predicted regulator 1702973..1703188 Escherichia coli K12 946152 NP_416143.2 CDS ydgK NC_000913.2 1703274 1703714 D conserved inner membrane protein 1703274..1703714 Escherichia coli K12 946154 NP_416144.1 CDS rsxA NC_000913.2 1703791 1704372 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane subunit 1703791..1704372 Escherichia coli K12 946148 NP_416145.1 CDS rsxB NC_000913.2 1704372 1704950 D GO_function: electron carrier activity [goid 0009055]; predicted iron-sulfur protein 1704372..1704950 Escherichia coli K12 946146 NP_416146.1 CDS rsxC NC_000913.2 1704943 1707165 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted 4Fe-4S ferredoxin-type protein/conserved protein 1704943..1707165 Escherichia coli K12 946137 NP_416147.1 CDS rsxD NC_000913.2 1707166 1708224 D electron transport complex protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane oxidoreductase 1707166..1708224 Escherichia coli K12 946134 NP_416148.1 CDS rsxG NC_000913.2 1708228 1708848 D predicted oxidoreductase 1708228..1708848 Escherichia coli K12 946158 NP_416149.1 CDS rsxE NC_000913.2 1708852 1709547 D electron transport complex protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane NADH-quinone reductase 1708852..1709547 Escherichia coli K12 947509 NP_416150.1 CDS nth NC_000913.2 1709547 1710182 D endonuclease III; specific for apurinic and/or apyrimidinic sites; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: response to radiation [goid 0009314]; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 1709547..1710182 Escherichia coli K12 947122 NP_416151.1 CDS tppB NC_000913.2 1710793 1712295 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1710793..1712295 Escherichia coli K12 947436 NP_416152.1 CDS gst NC_000913.2 1712401 1713006 D glutathionine S-transferase 1712401..1713006 Escherichia coli K12 945758 NP_416153.1 CDS pdxY NC_000913.2 1713050 1713913 R pyridoxal kinase 2 / pyridoxine kinase; pyridoxal kinase 2/pyridoxine kinase complement(1713050..1713913) Escherichia coli K12 946162 NP_416154.1 CDS tyrS NC_000913.2 1713972 1715246 R tyrosine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; tyrosyl-tRNA synthetase complement(1713972..1715246) Escherichia coli K12 948855 NP_416155.1 CDS pdxH NC_000913.2 1715375 1716031 R pyridoxinephosphate oxidase; GO_process: pyridoxine biosynthetic process [goid 0008615]; pyridoxine 5'-phosphate oxidase complement(1715375..1716031) Escherichia coli K12 946806 NP_416156.4 CDS ydhA NC_000913.2 1716090 1716419 R predicted lipoprotein complement(1716090..1716419) Escherichia coli K12 946811 NP_416157.1 CDS anmK NC_000913.2 1716517 1717626 R conserved protein complement(1716517..1717626) Escherichia coli K12 946810 YP_025304.1 CDS slyB NC_000913.2 1717900 1718367 D putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; outer membrane lipoprotein 1717900..1718367 Escherichia coli K12 946801 NP_416159.2 CDS slyA NC_000913.2 1718414 1718848 R transcriptional regulator for cryptic hemolysin; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(1718414..1718848) Escherichia coli K12 946167 NP_416160.1 CDS ydhI NC_000913.2 1719049 1719285 D predicted inner membrane protein 1719049..1719285 Escherichia coli K12 947559 NP_416161.4 CDS ydhJ NC_000913.2 1719288 1720145 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; undecaprenyl pyrophosphate phosphatase 1719288..1720145 Escherichia coli K12 946499 NP_416162.1 CDS ydhK NC_000913.2 1720145 1722157 D conserved inner membrane protein 1720145..1722157 Escherichia coli K12 946528 NP_416163.1 CDS sodC NC_000913.2 1722158 1722679 R superoxide dismutase precursor (Cu-Zn); GO_component: periplasmic space [goid 0042597]; GO_process: xenobiotic metabolic process [goid 0006805]; superoxide dismutase, Cu, Zn complement(1722158..1722679) Escherichia coli K12 945343 YP_025305.1 CDS ydhF NC_000913.2 1722760 1723656 R predicted oxidoreductase complement(1722760..1723656) Escherichia coli K12 946960 NP_416165.2 CDS ydhL NC_000913.2 1723705 1723944 R conserved protein complement(1723705..1723944) Escherichia coli K12 946168 NP_416166.3 CDS ydhM NC_000913.2 1724047 1724646 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1724047..1724646 Escherichia coli K12 946166 NP_416167.1 CDS nemA NC_000913.2 1724683 1725780 D N-ethylmaleimide reductase; GO_process: xenobiotic metabolic process [goid 0006805]; N-ethylmaleimide reductase, FMN-linked 1724683..1725780 Escherichia coli K12 946164 NP_416168.1 CDS gloA NC_000913.2 1725861 1726268 D lactoylglutathione lyase; GO_process: methylglyoxal metabolic process [goid 0009438]; glyoxalase I, Ni-dependent 1725861..1726268 Escherichia coli K12 946161 NP_416169.1 CDS rnt NC_000913.2 1726371 1727018 D RNase T, degrades tRNA; GO_process: RNA catabolic process [goid 0006401]; GO_process: DNA catabolic process [goid 0006308]; ribonuclease T (RNase T) 1726371..1727018 Escherichia coli K12 946159 NP_416170.1 CDS lhr NC_000913.2 1727111 1731727 D member of ATP-dependent helicase superfamily II; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; predicted ATP-dependent helicase 1727111..1731727 Escherichia coli K12 946156 NP_416171.1 CDS grxD NC_000913.2 1731778 1732125 R conserved protein complement(1731778..1732125) Escherichia coli K12 946169 NP_416172.1 CDS ydhO NC_000913.2 1732459 1733274 D putative lipoprotein; predicted lipoprotein 1732459..1733274 Escherichia coli K12 945210 NP_416173.1 CDS sodB NC_000913.2 1733402 1733983 D superoxide dismutase, iron; GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; superoxide dismutase, Fe 1733402..1733983 Escherichia coli K12 944953 NP_416174.1 CDS ydhP NC_000913.2 1734145 1735314 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(1734145..1735314) Escherichia coli K12 947340 YP_001165321.1 CDS ynhF NC_000913.2 1735480 1735569 R hypothetical protein complement(1735480..1735569) Escherichia coli K12 5061505 NP_416175.1 CDS purR NC_000913.2 1735868 1736893 D transcriptional repressor for pur regulon, glyA, glnB, prsA, speA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: histidine biosynthetic process [goid 0000105]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, hypoxanthine-binding 1735868..1736893 Escherichia coli K12 945226 NP_416176.1 CDS ydhB NC_000913.2 1736890 1737822 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1736890..1737822) Escherichia coli K12 945208 YP_025306.1 CDS ydhC NC_000913.2 1737935 1739146 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1737935..1739146 Escherichia coli K12 946077 NP_416178.1 CDS cfa NC_000913.2 1739437 1740585 D cyclopropane fatty acyl phospholipid synthase; cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) 1739437..1740585 Escherichia coli K12 944811 NP_416179.1 CDS ribC NC_000913.2 1740625 1741266 R riboflavin synthase, alpha chain; riboflavin synthase, alpha subunit complement(1740625..1741266) Escherichia coli K12 945848 YP_025307.1 CDS mdtK NC_000913.2 1741481 1742854 D multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug-efflux transporter); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system transporter 1741481..1742854 Escherichia coli K12 945883 NP_416181.1 CDS ydhQ NC_000913.2 1742895 1744151 R possible enzyme; conserved protein complement(1742895..1744151) Escherichia coli K12 944851 NP_416182.1 CDS ydhR NC_000913.2 1744724 1745029 D predicted protein 1744724..1745029 Escherichia coli K12 946177 NP_416183.1 CDS ydhS NC_000913.2 1745155 1746759 D conserved protein with FAD/NAD(P)-binding domain 1745155..1746759 Escherichia coli K12 945786 NP_416184.1 CDS ydhT NC_000913.2 1746771 1747583 R conserved protein complement(1746771..1747583) Escherichia coli K12 945960 NP_416185.1 CDS ydhU NC_000913.2 1747587 1748372 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cytochrome complement(1747587..1748372) Escherichia coli K12 945608 NP_416186.3 CDS ydhX NC_000913.2 1748369 1749088 R putative oxidoreductase, Fe-S subunit; predicted 4Fe-4S ferridoxin-type protein complement(1748369..1749088) Escherichia coli K12 947308 NP_416187.1 CDS ydhW NC_000913.2 1749101 1749748 R predicted protein complement(1749101..1749748) Escherichia coli K12 947180 NP_416188.1 CDS ydhV NC_000913.2 1749752 1751854 R predicted oxidoreductase complement(1749752..1751854) Escherichia coli K12 948756 NP_416189.1 CDS ydhY NC_000913.2 1751875 1752501 R putative oxidoreductase, Fe-S subunit; predicted 4Fe-4S ferridoxin-type protein complement(1751875..1752501) Escherichia coli K12 948749 NP_416190.1 CDS ydhZ NC_000913.2 1752956 1753165 R predicted protein complement(1752956..1753165) Escherichia coli K12 946180 NP_416191.1 CDS pykF NC_000913.2 1753722 1755134 D pyruvate kinase I (formerly F), fructose stimulated; GO_process: glycolysis [goid 0006096]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; pyruvate kinase I 1753722..1755134 Escherichia coli K12 946179 NP_416192.1 CDS lpp NC_000913.2 1755445 1755681 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; murein lipoprotein 1755445..1755681 Escherichia coli K12 946175 NP_416193.1 CDS ynhG NC_000913.2 1755745 1756749 R conserved protein complement(1755745..1756749) Escherichia coli K12 946174 NP_416194.1 CDS sufE NC_000913.2 1756898 1757314 R sulfur acceptor protein complement(1756898..1757314) Escherichia coli K12 946173 NP_416195.1 CDS sufS NC_000913.2 1757327 1758547 R selenocysteine lyase, PLP-dependent complement(1757327..1758547) Escherichia coli K12 946185 NP_416196.1 CDS sufD NC_000913.2 1758544 1759815 R component of SufBCD complex complement(1758544..1759815) Escherichia coli K12 944878 NP_416197.1 CDS sufC NC_000913.2 1759790 1760536 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; component of SufBCD complex, ATP-binding component of ABC superfamily complement(1759790..1760536) Escherichia coli K12 946128 NP_416198.2 CDS sufB NC_000913.2 1760546 1762033 R GO_process: protein folding [goid 0006457]; component of SufBCD complex complement(1760546..1762033) Escherichia coli K12 945753 NP_416199.1 CDS sufA NC_000913.2 1762042 1762410 R Fe-S cluster assembly protein complement(1762042..1762410) Escherichia coli K12 949014 NP_416200.1 CDS ydiH NC_000913.2 1762958 1763227 R predicted protein complement(1762958..1763227) Escherichia coli K12 946194 NP_416201.1 CDS ydiI NC_000913.2 1763246 1763656 R conserved protein complement(1763246..1763656) Escherichia coli K12 946190 NP_416202.1 CDS ydiJ NC_000913.2 1763653 1766709 R putative oxidase; predicted FAD-linked oxidoreductase complement(1763653..1766709) Escherichia coli K12 946189 NP_416203.1 CDS ydiK NC_000913.2 1767098 1768210 D predicted inner membrane protein 1767098..1768210 Escherichia coli K12 946183 NP_416204.2 CDS ydiL NC_000913.2 1768639 1768995 D conserved protein 1768639..1768995 Escherichia coli K12 946181 NP_416205.1 CDS ydiM NC_000913.2 1769095 1770309 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1769095..1770309 Escherichia coli K12 946196 NP_416206.5 CDS ydiN NC_000913.2 1770530 1771801 D putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1770530..1771801 Escherichia coli K12 946198 NP_416207.1 CDS ydiB NC_000913.2 1771813 1772679 D putative oxidoreductase; quinate/shikimate 5-dehydrogenase, NAD(P)-binding 1771813..1772679 Escherichia coli K12 946200 NP_416208.1 CDS aroD NC_000913.2 1772710 1773468 D GO_process: chorismate biosynthetic process [goid 0009423]; 3-dehydroquinate dehydratase 1772710..1773468 Escherichia coli K12 946210 NP_416209.1 CDS ydiF NC_000913.2 1773611 1775206 D putative enzyme; GO_process: fatty acid oxidation [goid 0019395]; fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit 1773611..1775206 Escherichia coli K12 946211 NP_416210.4 CDS ydiO NC_000913.2 1775220 1776371 D putative oxidoreductase; predicted acyl-CoA dehydrogenase 1775220..1776371 Escherichia coli K12 945626 NP_416211.1 CDS ydiP NC_000913.2 1776414 1777325 R putative ARAC-type regulatory protein; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(1776414..1777325) Escherichia coli K12 945095 NP_416212.1 CDS ydiQ NC_000913.2 1777641 1778405 D putative transport protein; conserved protein 1777641..1778405 Escherichia coli K12 946482 NP_416213.1 CDS ydiR NC_000913.2 1778425 1779363 D putative flavoprotein; GO_function: electron carrier activity [goid 0009055]; predicted electron transfer flavoprotein, FAD-binding 1778425..1779363 Escherichia coli K12 945688 NP_416214.1 CDS ydiS NC_000913.2 1779419 1780708 D flavoprotein; probably electron transport; GO_function: electron carrier activity [goid 0009055]; predicted oxidoreductase with FAD/NAD(P)-binding domain 1779419..1780708 Escherichia coli K12 946212 NP_416215.1 CDS ydiT NC_000913.2 1780705 1780998 D GO_function: electron carrier activity [goid 0009055]; predicted 4Fe-4S ferredoxin-type protein 1780705..1780998 Escherichia coli K12 946214 NP_416216.4 CDS fadK NC_000913.2 1781055 1782701 D putative ligase/synthetase; short chain acyl-CoA synthetase, anaerobic 1781055..1782701 Escherichia coli K12 946213 NP_416217.1 CDS pps NC_000913.2 1782758 1785136 R GO_process: gluconeogenesis [goid 0006094]; phosphoenolpyruvate synthase complement(1782758..1785136) Escherichia coli K12 946209 NP_416218.1 CDS ydiA NC_000913.2 1785469 1786302 D conserved protein 1785469..1786302 Escherichia coli K12 946207 NP_416219.1 CDS aroH NC_000913.2 1786459 1787505 D 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible); GO_process: tryptophan biosynthetic process [goid 0000162]; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible 1786459..1787505 Escherichia coli K12 946229 NP_416220.1 CDS ydiE NC_000913.2 1787637 1787828 D conserved protein 1787637..1787828 Escherichia coli K12 946205 NP_416221.1 CDS ydiU NC_000913.2 1787832 1789268 R conserved protein complement(1787832..1789268) Escherichia coli K12 946219 NP_416222.1 CDS ydiV NC_000913.2 1789331 1790044 R conserved protein complement(1789331..1790044) Escherichia coli K12 946217 NP_416223.1 CDS nlpC NC_000913.2 1790291 1790755 R lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lipoprotein complement(1790291..1790755) Escherichia coli K12 946220 NP_416224.1 CDS btuD NC_000913.2 1790833 1791582 R ATP-binding component of vitamin B12 transport system; GO_component: cytoplasm [goid 0005737]; vitamin B12 transporter subunit : ATP-binding component of ABC superfamily complement(1790833..1791582) Escherichia coli K12 945751 NP_416225.1 CDS btuE NC_000913.2 1791582 1792133 R vitamin B12 transport; GO_component: periplasmic space [goid 0042597]; predicted glutathione peroxidase complement(1791582..1792133) Escherichia coli K12 945915 NP_416226.1 CDS btuC NC_000913.2 1792196 1793176 R vitamin B12 transport permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; vitamin B12 transporter subunit: membrane component of ABC superfamily complement(1792196..1793176) Escherichia coli K12 945877 NP_416227.1 CDS ihfA NC_000913.2 1793277 1793576 R integration host factor (IHF), alpha subunit; site specific recombination; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; integration host factor (IHF), DNA-binding protein, alpha subunit complement(1793277..1793576) Escherichia coli K12 945472 NP_416228.1 CDS pheT NC_000913.2 1793581 1795968 R phenylalanine tRNA synthetase, beta-subunit; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; phenylalanine tRNA synthetase, beta subunit complement(1793581..1795968) Escherichia coli K12 945382 NP_416229.1 CDS pheS NC_000913.2 1795983 1796966 R phenylalanine tRNA synthetase, alpha-subunit; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; phenylalanine tRNA synthetase, alpha subunit complement(1795983..1796966) Escherichia coli K12 946223 NP_416230.1 CDS pheM NC_000913.2 1797250 1797294 R phenylalanyl-tRNA synthetase (pheST) operon leader peptide; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; phenylalanyl-tRNA synthetase operon leader peptide complement(1797250..1797294) Escherichia coli K12 947212 NP_416231.1 CDS rplT NC_000913.2 1797417 1797773 R 50S ribosomal subunit protein L20, and regulator; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L20 complement(1797417..1797773) Escherichia coli K12 945152 NP_416232.3 CDS rpmI NC_000913.2 1797826 1798023 R 50S ribosomal subunit protein A; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L35 complement(1797826..1798023) Escherichia coli K12 946349 NP_416233.1 CDS infC NC_000913.2 1798120 1798662 R GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; protein chain initiation factor IF-3 complement(1798120..1798662) Escherichia coli K12 946225 NP_416234.1 CDS thrS NC_000913.2 1798666 1800594 R threonine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; threonyl-tRNA synthetase complement(1798666..1800594) Escherichia coli K12 946222 b4494 CDS arpB NC_000913.2 1801118 1803017 D Putative regulatory protein with ankyrin repeats; join(1801118..1801543,1801542..1803017) Escherichia coli K12 948935 YP_588455.2 CDS yniD NC_000913.2 1803189 1803296 D predicted protein 1803189..1803296 Escherichia coli K12 1450269 NP_416236.1 CDS ydiY NC_000913.2 1803349 1804107 R conserved protein complement(1803349..1804107) Escherichia coli K12 946218 NP_416237.3 CDS pfkB NC_000913.2 1804394 1805323 D 6-phosphofructokinase II; suppressor of pfkA; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 6-phosphofructokinase II 1804394..1805323 Escherichia coli K12 946230 NP_416238.1 CDS ydiZ NC_000913.2 1805424 1805714 D predicted protein 1805424..1805714 Escherichia coli K12 946232 NP_416239.1 CDS yniA NC_000913.2 1805820 1806680 D predicted phosphotransferase/kinase 1805820..1806680 Escherichia coli K12 946236 NP_416240.1 CDS yniB NC_000913.2 1806721 1807257 R predicted inner membrane protein complement(1806721..1807257) Escherichia coli K12 945140 NP_416241.1 CDS yniC NC_000913.2 1807404 1808072 D putative phosphatase; predicted hydrolase 1807404..1808072 Escherichia coli K12 945632 NP_416242.5 CDS ydjM NC_000913.2 1808223 1808825 D GO_process: SOS response [goid 0009432]; predicted inner membrane protein regulated by LexA 1808223..1808825 Escherichia coli K12 945644 NP_416243.1 CDS ydjN NC_000913.2 1808958 1810349 D predicted transporter 1808958..1810349 Escherichia coli K12 946238 NP_416244.1 CDS ydjO NC_000913.2 1810353 1811168 R predicted protein complement(1810353..1811168) Escherichia coli K12 946237 NP_416245.2 CDS cedA NC_000913.2 1811445 1811687 R cell division modulator complement(1811445..1811687) Escherichia coli K12 946235 YP_025308.1 CDS katE NC_000913.2 1811891 1814152 D catalase; hydroperoxidase HPII(III); GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; hydroperoxidase HPII(III) (catalase) 1811891..1814152 Escherichia coli K12 946234 NP_416247.1 CDS chbG NC_000913.2 1814410 1815159 R conserved protein complement(1814410..1815159) Escherichia coli K12 946231 NP_416248.1 CDS chbF NC_000913.2 1815172 1816524 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; cryptic phospho-beta-glucosidase, NAD(P)-binding complement(1815172..1816524) Escherichia coli K12 946266 NP_416249.1 CDS chbR NC_000913.2 1816629 1817471 R negative transcriptional regulator of cel operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(1816629..1817471) Escherichia coli K12 946247 NP_416250.1 CDS chbA NC_000913.2 1817479 1817829 R PTS family enzyme IIA, cellobiose/arbutin/salicin sugar-specific; GO_process: carbohydrate catabolic process [goid 0016052]; N,N'-diacetylchitobiose-specific enzyme IIA component of PTS complement(1817479..1817829) Escherichia coli K12 946244 NP_416251.1 CDS chbC NC_000913.2 1817880 1819238 R PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; N,N'-diacetylchitobiose-specific enzyme IIC component of PTS complement(1817880..1819238) Escherichia coli K12 945982 NP_416252.1 CDS chbB NC_000913.2 1819323 1819643 R PTS family enzyme IIB, cellobiose/arbutin/salicin sugar-specific; GO_process: carbohydrate catabolic process [goid 0016052]; N,N'-diacetylchitobiose-specific enzyme IIB component of PTS complement(1819323..1819643) Escherichia coli K12 945339 NP_416253.1 CDS osmE NC_000913.2 1819942 1820280 R activator of ntrL gene; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; DNA-binding transcriptional activator complement(1819942..1820280) Escherichia coli K12 945305 NP_416254.1 CDS nadE NC_000913.2 1820482 1821309 D NAD synthetase, prefers NH3 over glutamine; GO_process: NAD biosynthetic process [goid 0009435]; NAD synthetase, NH3/glutamine-dependent 1820482..1821309 Escherichia coli K12 946946 NP_416255.1 CDS cho NC_000913.2 1821539 1822426 D putative excinuclease subunit; endonuclease of nucleotide excision repair 1821539..1822426 Escherichia coli K12 948996 NP_416256.2 CDS ves NC_000913.2 1822386 1822961 R conserved protein complement(1822386..1822961) Escherichia coli K12 946245 NP_416257.1 CDS spy NC_000913.2 1823164 1823649 R periplasmic protein related to spheroblast formation; GO_component: periplasmic space [goid 0042597]; envelope stress induced periplasmic protein complement(1823164..1823649) Escherichia coli K12 946253 NP_416258.1 CDS astE NC_000913.2 1823979 1824947 R GO_process: amino acid catabolic process [goid 0009063]; succinylglutamate desuccinylase complement(1823979..1824947) Escherichia coli K12 946256 NP_416259.1 CDS astB NC_000913.2 1824940 1826283 R GO_process: amino acid catabolic process [goid 0009063]; succinylarginine dihydrolase complement(1824940..1826283) Escherichia coli K12 946259 NP_416260.1 CDS astD NC_000913.2 1826280 1827758 R GO_process: amino acid catabolic process [goid 0009063]; succinylglutamic semialdehyde dehydrogenase complement(1826280..1827758) Escherichia coli K12 946260 NP_416261.1 CDS astA NC_000913.2 1827755 1828789 R GO_process: amino acid catabolic process [goid 0009063]; arginine succinyltransferase complement(1827755..1828789) Escherichia coli K12 946261 NP_416262.1 CDS astC NC_000913.2 1828786 1830006 R acetylornithine delta-aminotransferase; GO_process: amino acid catabolic process [goid 0009063]; succinylornithine transaminase, PLP-dependent complement(1828786..1830006) Escherichia coli K12 946255 NP_416263.1 CDS xthA NC_000913.2 1830452 1831258 D GO_process: DNA catabolic process [goid 0006308]; GO_process: response to radiation [goid 0009314]; exonuclease III 1830452..1831258 Escherichia coli K12 946254 NP_416264.4 CDS ydjX NC_000913.2 1831425 1832135 D predicted inner membrane protein 1831425..1832135 Escherichia coli K12 946250 NP_416265.4 CDS ydjY NC_000913.2 1832140 1832817 D predicted protein 1832140..1832817 Escherichia coli K12 946248 NP_416266.1 CDS ydjZ NC_000913.2 1832832 1833539 D conserved inner membrane protein 1832832..1833539 Escherichia coli K12 946269 NP_416267.1 CDS ynjA NC_000913.2 1833539 1834087 D conserved protein 1833539..1834087 Escherichia coli K12 946270 NP_416268.2 CDS ynjB NC_000913.2 1834097 1835263 D conserved protein 1834097..1835263 Escherichia coli K12 946271 NP_416269.4 CDS ynjC NC_000913.2 1835236 1836771 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused transporter subunits of ABC superfamily: membrane components 1835236..1836771 Escherichia coli K12 946273 NP_416270.1 CDS ynjD NC_000913.2 1836771 1837424 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 1836771..1837424 Escherichia coli K12 944965 NP_416271.4 CDS ynjE NC_000913.2 1837491 1838798 D putative thiosulfate sulfur transferase; GO_process: sulfur metabolic process [goid 0006790]; predicted thiosulfate sulfur transferase 1837491..1838798 Escherichia coli K12 946505 NP_416272.2 CDS ynjF NC_000913.2 1838807 1839427 R putative cytochrome oxidase; predicted phosphatidyl transferase, inner membrane protein complement(1838807..1839427) Escherichia coli K12 946221 NP_416273.1 CDS nudG NC_000913.2 1839514 1839921 D 5-hydroxy-CTP pyrophosphohydrolase; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1839514..1839921 Escherichia coli K12 946277 NP_416274.1 CDS ynjH NC_000913.2 1839887 1840159 R predicted protein complement(1839887..1840159) Escherichia coli K12 946279 NP_416275.1 CDS gdhA NC_000913.2 1840395 1841738 D NADP-specific glutamate dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: glutamate biosynthetic process [goid 0006537]; glutamate dehydrogenase, NADP-specific 1840395..1841738 Escherichia coli K12 946802 NP_416276.4 CDS ynjI NC_000913.2 1841855 1842895 R predicted inner membrane protein complement(1841855..1842895) Escherichia coli K12 946239 NP_416277.1 CDS topB NC_000913.2 1843023 1844984 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA topoisomerase III complement(1843023..1844984) Escherichia coli K12 946141 NP_416278.1 CDS selD NC_000913.2 1844989 1846032 R selenophosphate synthase, H(2)Se added to acrylyl-tRNA; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; selenophosphate synthase complement(1844989..1846032) Escherichia coli K12 946768 NP_416279.1 CDS ydjA NC_000913.2 1846149 1846700 R predicted oxidoreductase complement(1846149..1846700) Escherichia coli K12 945964 NP_416280.1 CDS sppA NC_000913.2 1846861 1848717 D protease IV, a signal peptide peptidase; protease IV (signal peptide peptidase) 1846861..1848717 Escherichia coli K12 946281 NP_416281.1 CDS ansA NC_000913.2 1848884 1849900 D GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; cytoplasmic L-asparaginase I 1848884..1849900 Escherichia coli K12 946278 NP_416282.4 CDS pncA NC_000913.2 1849911 1850552 D GO_component: cytoplasm [goid 0005737]; GO_process: NAD biosynthetic process [goid 0009435]; nicotinamidase/pyrazinamidase 1849911..1850552 Escherichia coli K12 946276 NP_416283.1 CDS ydjE NC_000913.2 1850645 1852003 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(1850645..1852003) Escherichia coli K12 946274 NP_416284.1 CDS ydjF NC_000913.2 1852120 1852878 R putative DEOR-type transcriptional regulator; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(1852120..1852878) Escherichia coli K12 946272 NP_416285.1 CDS ydjG NC_000913.2 1853015 1853995 R predicted oxidoreductase complement(1853015..1853995) Escherichia coli K12 946283 NP_416286.4 CDS ydjH NC_000913.2 1854005 1854952 R putative kinase; predicted kinase complement(1854005..1854952) Escherichia coli K12 946285 NP_416287.1 CDS ydjI NC_000913.2 1854957 1855793 R putative aldolase; predicted aldolase complement(1854957..1855793) Escherichia coli K12 946291 NP_416288.1 CDS ydjJ NC_000913.2 1855814 1856857 R putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding complement(1855814..1856857) Escherichia coli K12 946292 NP_416289.1 CDS ydjK NC_000913.2 1856874 1858253 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(1856874..1858253) Escherichia coli K12 946293 NP_416290.1 CDS ydjL NC_000913.2 1858280 1859356 R predicted oxidoreductase, Zn-dependent and NAD(P)-binding complement(1858280..1859356) Escherichia coli K12 946299 NP_416291.4 CDS yeaC NC_000913.2 1859726 1859998 R conserved protein complement(1859726..1859998) Escherichia coli K12 947074 NP_416292.1 CDS msrB NC_000913.2 1860040 1860453 R methionine sulfoxide reductase B complement(1860040..1860453) Escherichia coli K12 947188 NP_416293.1 CDS gapA NC_000913.2 1860795 1861790 D GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: gluconeogenesis [goid 0006094]; glyceraldehyde-3-phosphate dehydrogenase A 1860795..1861790 Escherichia coli K12 947679 NP_416294.4 CDS yeaD NC_000913.2 1861874 1862758 D conserved protein 1861874..1862758 Escherichia coli K12 946572 NP_416295.1 CDS yeaE NC_000913.2 1862806 1863660 R putative an aldehyde reductase; predicted oxidoreductase complement(1862806..1863660) Escherichia coli K12 946302 NP_416296.1 CDS mipA NC_000913.2 1863750 1864496 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; scaffolding protein for murein synthesizing machinery complement(1863750..1864496) Escherichia coli K12 946301 NP_416297.1 CDS yeaG NC_000913.2 1864932 1866866 D conserved protein with nucleoside triphosphate hydrolase domain 1864932..1866866 Escherichia coli K12 946297 NP_416298.1 CDS yeaH NC_000913.2 1866979 1868262 D conserved protein 1866979..1868262 Escherichia coli K12 946296 NP_416299.1 CDS yeaI NC_000913.2 1868409 1869884 D predicted diguanylate cyclase 1868409..1869884 Escherichia coli K12 946366 NP_416300.2 CDS yeaJ NC_000913.2 1870065 1871555 D predicted diguanylate cyclase 1870065..1871555 Escherichia coli K12 946290 NP_416301.1 CDS yeaK NC_000913.2 1871598 1872101 D conserved protein 1871598..1872101 Escherichia coli K12 946303 NP_416302.2 CDS yoaI NC_000913.2 1872102 1872206 R predicted protein complement(1872102..1872206) Escherichia coli K12 946294 NP_416303.1 CDS yeaL NC_000913.2 1872376 1872822 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1872376..1872822 Escherichia coli K12 946307 NP_416304.1 CDS yeaM NC_000913.2 1872779 1873600 R putative ARAC-type regulatory protein; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(1872779..1873600) Escherichia coli K12 946590 NP_416305.1 CDS yeaN NC_000913.2 1873697 1874878 D putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amide transport [goid 0042886]; predicted transporter 1873697..1874878 Escherichia coli K12 946309 NP_416306.2 CDS yeaO NC_000913.2 1874933 1875280 D conserved protein 1874933..1875280 Escherichia coli K12 945675 NP_416307.1 CDS yoaF NC_000913.2 1875302 1875556 R conserved outer membrane protein complement(1875302..1875556) Escherichia coli K12 946310 NP_416308.4 CDS yeaP NC_000913.2 1875739 1876764 D predicted diguanylate cyclase 1875739..1876764 Escherichia coli K12 948969 NP_416309.1 CDS yeaQ NC_000913.2 1877031 1877279 R conserved inner membrane protein complement(1877031..1877279) Escherichia coli K12 946311 NP_416310.1 CDS yoaG NC_000913.2 1877427 1877609 R predicted protein complement(1877427..1877609) Escherichia coli K12 946314 NP_416311.1 CDS yeaR NC_000913.2 1877613 1877972 R GO_process: xenobiotic metabolic process [goid 0006805]; conserved protein complement(1877613..1877972) Escherichia coli K12 946317 NP_416312.1 CDS leuE NC_000913.2 1878145 1878783 R neutral amino-acid efflux system complement(1878145..1878783) Escherichia coli K12 946157 NP_416313.4 CDS yeaT NC_000913.2 1878910 1879833 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1878910..1879833) Escherichia coli K12 946316 NP_416314.1 CDS yeaU NC_000913.2 1879936 1881021 D putative tartrate dehydrogenase; GO_process: fermentation [goid 0006113]; predicted dehydrogenase 1879936..1881021 Escherichia coli K12 946319 NP_416315.1 CDS yeaV NC_000913.2 1881212 1882657 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1881212..1882657 Escherichia coli K12 947326 NP_416316.1 CDS yeaW NC_000913.2 1882689 1883813 D predicted 2Fe-2S cluster-containing protein 1882689..1883813 Escherichia coli K12 946325 NP_416317.1 CDS yeaX NC_000913.2 1883869 1884834 D putative diogenase beta subunit; predicted oxidoreductase 1883869..1884834 Escherichia coli K12 946329 NP_416318.1 CDS rnd NC_000913.2 1884888 1886015 R RNase D, processes tRNA precursor; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; GO_process: RNA modification [goid 0009451]; ribonuclease D complement(1884888..1886015) Escherichia coli K12 946328 NP_416319.1 CDS fadD NC_000913.2 1886085 1887770 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: phospholipid biosynthetic process [goid 0008654]; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) complement(1886085..1887770) Escherichia coli K12 946327 NP_416320.1 CDS yeaY NC_000913.2 1887975 1888556 R putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lipoprotein complement(1887975..1888556) Escherichia coli K12 946312 NP_416321.1 CDS yeaZ NC_000913.2 1888596 1889291 R predicted peptidase complement(1888596..1889291) Escherichia coli K12 946304 NP_416322.1 CDS yoaA NC_000913.2 1889349 1891259 R putative enzyme; GO_component: cytoplasm [goid 0005737]; conserved protein with nucleoside triphosphate hydrolase domain complement(1889349..1891259) Escherichia coli K12 946305 NP_416323.4 CDS yoaB NC_000913.2 1891391 1891735 D conserved protein 1891391..1891735 Escherichia coli K12 946357 NP_416324.1 CDS yoaC NC_000913.2 1892097 1892456 D predicted protein 1892097..1892456 Escherichia coli K12 946308 NP_416325.1 CDS yoaH NC_000913.2 1892576 1892755 R conserved protein complement(1892576..1892755) Escherichia coli K12 946346 NP_416326.1 CDS pabB NC_000913.2 1892829 1894190 D p-aminobenzoate synthetase, component I; GO_process: folic acid biosynthetic process [goid 0046656]; aminodeoxychorismate synthase, subunit I 1892829..1894190 Escherichia coli K12 946337 NP_416327.1 CDS nudL NC_000913.2 1894194 1894772 D predicted NUDIX hydrolase 1894194..1894772 Escherichia coli K12 946330 NP_416328.1 CDS sdaA NC_000913.2 1894956 1896320 D L-serine deaminase; GO_process: amino acid catabolic process [goid 0009063]; L-serine deaminase I 1894956..1896320 Escherichia coli K12 946331 NP_416329.4 CDS yoaD NC_000913.2 1896451 1898049 D predicted phosphodiesterase 1896451..1898049 Escherichia coli K12 946336 NP_416330.1 CDS yoaE NC_000913.2 1898053 1899609 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; fused predicted membrane protein/conserved protein complement(1898053..1899609) Escherichia coli K12 946335 NP_416331.1 CDS manX NC_000913.2 1900072 1901043 D PTS enzyme IIAB, mannose-specific; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused mannose-specific PTS enzymes: IIA component/IIB component 1900072..1901043 Escherichia coli K12 946334 NP_416332.1 CDS manY NC_000913.2 1901106 1901906 D PTS enzyme IIC, mannose-specific; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; mannose-specific enzyme IIC component of PTS 1901106..1901906 Escherichia coli K12 946332 NP_416333.3 CDS manZ NC_000913.2 1901910 1902770 D PTS enzyme IID, mannose-specific; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; mannose-specific enzyme IID component of PTS 1901910..1902770 Escherichia coli K12 946342 NP_416334.1 CDS yobD NC_000913.2 1902825 1903283 D conserved inner membrane protein 1902825..1903283 Escherichia coli K12 946343 NP_416335.4 CDS yebN NC_000913.2 1903712 1904278 D conserved inner membrane protein 1903712..1904278 Escherichia coli K12 946341 NP_416336.1 CDS rrmA NC_000913.2 1904275 1905084 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 23S rRNA m1G745 methyltransferase complement(1904275..1905084) Escherichia coli K12 946340 NP_416337.1 CDS cspC NC_000913.2 1905250 1905459 R cold shock protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; stress protein, member of the CspA-family complement(1905250..1905459) Escherichia coli K12 946339 NP_416338.1 CDS yobF NC_000913.2 1905472 1905615 R predicted protein complement(1905472..1905615) Escherichia coli K12 946338 NP_416339.1 CDS yebO NC_000913.2 1906285 1906572 R predicted protein complement(1906285..1906572) Escherichia coli K12 946350 NP_416340.1 CDS mgrB NC_000913.2 1906647 1906790 R predicted protein complement(1906647..1906790) Escherichia coli K12 946351 YP_588456.1 CDS yobH NC_000913.2 1906949 1907188 D predicted protein 1906949..1907188 Escherichia coli K12 1450271 NP_416341.1 CDS kdgR NC_000913.2 1907332 1908123 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(1907332..1908123) Escherichia coli K12 946129 NP_416342.4 CDS yebQ NC_000913.2 1908300 1909673 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1908300..1909673 Escherichia coli K12 946048 NP_416343.1 CDS htpX NC_000913.2 1909719 1910600 R heat shock protein, integral membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to temperature stimulus [goid 0009266]; predicted endopeptidase complement(1909719..1910600) Escherichia coli K12 946076 NP_416344.1 CDS prc NC_000913.2 1910792 1912840 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: protein folding [goid 0006457]; GO_process: response to drug [goid 0042493]; carboxy-terminal protease for penicillin-binding protein 3 complement(1910792..1912840) Escherichia coli K12 946096 YP_026161.1 CDS proQ NC_000913.2 1912860 1913558 R regulator of ProP putative structural element which influences activation of ProP; GO_process: response to osmotic stress [goid 0006970]; predicted structural transport element complement(1912860..1913558) Escherichia coli K12 948950 NP_416346.3 CDS yebR NC_000913.2 1913655 1914206 R conserved protein complement(1913655..1914206) Escherichia coli K12 946086 NP_416347.1 CDS yebS NC_000913.2 1914282 1915565 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1914282..1915565 Escherichia coli K12 946353 NP_416348.2 CDS yebT NC_000913.2 1915534 1918167 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved protein 1915534..1918167 Escherichia coli K12 946352 NP_416349.2 CDS rsmF NC_000913.2 1918247 1919686 D GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; predicted methyltransferase 1918247..1919686 Escherichia coli K12 946348 NP_416350.4 CDS yebV NC_000913.2 1919804 1920040 D predicted protein 1919804..1920040 Escherichia coli K12 946347 NP_416351.2 CDS yebW NC_000913.2 1920145 1920336 D predicted protein 1920145..1920336 Escherichia coli K12 946354 NP_416352.4 CDS pphA NC_000913.2 1920337 1920993 R GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; GO_process: response to temperature stimulus [goid 0009266]; serine/threonine-specific protein phosphatase 1 complement(1920337..1920993) Escherichia coli K12 946356 NP_416353.1 CDS yebY NC_000913.2 1921389 1921730 R predicted protein complement(1921389..1921730) Escherichia coli K12 947014 NP_416354.1 CDS yebZ NC_000913.2 1921743 1922615 R putative resistance protein; GO_process: response to drug [goid 0042493]; predicted inner membrane protein complement(1921743..1922615) Escherichia coli K12 947078 NP_416355.1 CDS yobA NC_000913.2 1922619 1922993 R conserved protein complement(1922619..1922993) Escherichia coli K12 948315 NP_416356.1 CDS holE NC_000913.2 1923132 1923362 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, theta subunit 1923132..1923362 Escherichia coli K12 947471 NP_416357.1 CDS yobB NC_000913.2 1923464 1924120 D conserved protein 1923464..1924120 Escherichia coli K12 948329 NP_416358.1 CDS exoX NC_000913.2 1924144 1924806 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; DNA exonuclease X 1924144..1924806 Escherichia coli K12 946361 NP_416359.1 CDS ptrB NC_000913.2 1924803 1926863 R protease II complement(1924803..1926863) Escherichia coli K12 946358 NP_416360.1 CDS yebE NC_000913.2 1927072 1927731 R conserved protein complement(1927072..1927731) Escherichia coli K12 946355 NP_416361.2 CDS yebF NC_000913.2 1928058 1928414 R predicted protein complement(1928058..1928414) Escherichia coli K12 946363 NP_416362.1 CDS yebG NC_000913.2 1928481 1928771 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; conserved protein regulated by LexA complement(1928481..1928771) Escherichia coli K12 946364 NP_416363.1 CDS purT NC_000913.2 1928905 1930083 D GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylglycinamide formyltransferase 2 1928905..1930083 Escherichia coli K12 946368 NP_416364.1 CDS eda NC_000913.2 1930139 1930780 R 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: Entner-Doudoroff pathway [goid 0009255]; GO_process: glyoxylate catabolic process [goid 0009436]; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase complement(1930139..1930780) Escherichia coli K12 946367 NP_416365.1 CDS edd NC_000913.2 1930817 1932628 R GO_process: Entner-Doudoroff pathway [goid 0009255]; 6-phosphogluconate dehydratase complement(1930817..1932628) Escherichia coli K12 946362 NP_416366.1 CDS zwf NC_000913.2 1932863 1934338 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, oxidative branch [goid 0009051]; glucose-6-phosphate dehydrogenase complement(1932863..1934338) Escherichia coli K12 946370 NP_416367.1 CDS yebK NC_000913.2 1934676 1935545 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1934676..1935545 Escherichia coli K12 946373 NP_416368.1 CDS pykA NC_000913.2 1935673 1937115 D pyruvate kinase II, glucose stimulated; GO_process: glycolysis [goid 0006096]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; pyruvate kinase II 1935673..1937115 Escherichia coli K12 946527 NP_416369.1 CDS lpxM NC_000913.2 1937246 1938217 R suppressor of htrB, heat shock protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; myristoyl-acyl carrier protein (ACP)-dependent acyltransferase complement(1937246..1938217) Escherichia coli K12 945143 NP_416370.2 CDS yebA NC_000913.2 1938337 1939659 R predicted peptidase complement(1938337..1939659) Escherichia coli K12 946376 NP_416371.4 CDS znuA NC_000913.2 1939675 1940607 R GO_component: periplasmic space [goid 0042597]; zinc transporter subunit: periplasmic-binding component of ABC superfamily complement(1939675..1940607) Escherichia coli K12 946375 NP_416372.1 CDS znuC NC_000913.2 1940686 1941441 D GO_component: cytoplasm [goid 0005737]; zinc transporter subunit: ATP-binding component of ABC superfamily 1940686..1941441 Escherichia coli K12 946374 NP_416373.1 CDS znuB NC_000913.2 1941438 1942223 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; zinc transporter subunit: membrane component of ABC superfamily 1941438..1942223 Escherichia coli K12 946372 NP_416374.1 CDS ruvB NC_000913.2 1942370 1943380 R Holliday junction helicase subunit A; branch migration; repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; GO_process: SOS response [goid 0009432]; ATP-dependent DNA helicase, component of RuvABC resolvasome complement(1942370..1943380) Escherichia coli K12 946371 NP_416375.1 CDS ruvA NC_000913.2 1943389 1944000 R Holliday junction helicase subunit B; branch migration; repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; GO_process: SOS response [goid 0009432]; component of RuvABC resolvasome, regulatory subunit complement(1943389..1944000) Escherichia coli K12 946369 NP_416376.2 CDS yebB NC_000913.2 1944275 1944877 D predicted protein 1944275..1944877 Escherichia coli K12 946377 NP_416377.1 CDS ruvC NC_000913.2 1944879 1945400 R Holliday junction nuclease; resolution of structures; repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; component of RuvABC resolvasome, endonuclease complement(1944879..1945400) Escherichia coli K12 946378 NP_416378.1 CDS yebC NC_000913.2 1945435 1946175 R conserved protein complement(1945435..1946175) Escherichia coli K12 946379 NP_416379.1 CDS nudB NC_000913.2 1946204 1946656 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; dATP pyrophosphohydrolase complement(1946204..1946656) Escherichia coli K12 946383 NP_416380.1 CDS aspS NC_000913.2 1946774 1948546 R aspartate tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; aspartyl-tRNA synthetase complement(1946774..1948546) Escherichia coli K12 946385 NP_416381.2 CDS yecD NC_000913.2 1948856 1949422 D predicted hydrolase 1948856..1949422 Escherichia coli K12 946384 NP_416382.1 CDS yecE NC_000913.2 1949419 1950237 D conserved protein 1949419..1950237 Escherichia coli K12 946382 NP_416383.4 CDS yecN NC_000913.2 1950290 1950685 D predicted inner membrane protein 1950290..1950685 Escherichia coli K12 946381 NP_416384.1 CDS cmoA NC_000913.2 1950726 1951469 D predicted methyltransferase 1950726..1951469 Escherichia coli K12 946380 NP_416385.1 CDS cmoB NC_000913.2 1951466 1952437 D putative enzyme; predicted S-adenosyl-L-methionine-dependent methyltransferase 1951466..1952437 Escherichia coli K12 946387 NP_416386.4 CDS torZ NC_000913.2 1952602 1955031 R GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; trimethylamine N-oxide reductase system III, catalytic subunit complement(1952602..1955031) Escherichia coli K12 946389 NP_416387.1 CDS torY NC_000913.2 1955056 1956156 R GO_function: electron carrier activity [goid 0009055]; TMAO reductase III (TorYZ), cytochrome c-type subunit complement(1955056..1956156) Escherichia coli K12 946490 YP_025309.2 CDS cutC NC_000913.2 1956544 1957290 R GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; copper homeostasis protein complement(1956544..1957290) Escherichia coli K12 2847756 NP_416389.4 CDS yecM NC_000913.2 1957304 1957870 R predicted metal-binding enzyme complement(1957304..1957870) Escherichia coli K12 946415 NP_416390.1 CDS argS NC_000913.2 1958086 1959819 D arginine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; arginyl-tRNA synthetase 1958086..1959819 Escherichia coli K12 946452 NP_416391.4 CDS yecT NC_000913.2 1959996 1960484 D predicted protein 1959996..1960484 Escherichia coli K12 946511 NP_416392.1 CDS flhE NC_000913.2 1960604 1960996 R flagellar protein; conserved protein complement(1960604..1960996) Escherichia coli K12 946094 NP_416393.1 CDS flhA NC_000913.2 1960996 1963074 R flagellar biosynthesis; possible export of flagellar proteins; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; predicted flagellar export pore protein complement(1960996..1963074) Escherichia coli K12 946390 NP_416394.1 CDS flhB NC_000913.2 1963067 1964215 R putative part of export apparatus for flagellar proteins; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted flagellar export pore protein complement(1963067..1964215) Escherichia coli K12 946391 NP_416395.1 CDS cheZ NC_000913.2 1964417 1965061 R chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; chemotaxis regulator, protein phosphatase for CheY complement(1964417..1965061) Escherichia coli K12 946392 NP_416396.1 CDS cheY NC_000913.2 1965072 1965461 R chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components; GO_component: cytoplasm [goid 0005737]; GO_process: taxis [goid 0042330]; chemotaxis regulator transmitting signal to flagellar motor component complement(1965072..1965461) Escherichia coli K12 946393 NP_416397.1 CDS cheB NC_000913.2 1965476 1966525 R response regulator for chemotaxis (cheA sensor); protein methylesterase; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA complement(1965476..1966525) Escherichia coli K12 946394 NP_416398.1 CDS cheR NC_000913.2 1966528 1967388 R response regulator for chemotaxis; protein glutamate methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; chemotaxis regulator, protein-glutamate methyltransferase complement(1966528..1967388) Escherichia coli K12 946396 NP_416399.1 CDS tap NC_000913.2 1967407 1969008 R methyl-accepting chemotaxis protein IV, peptide sensor receptor; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting protein IV complement(1967407..1969008) Escherichia coli K12 946397 NP_416400.1 CDS tar NC_000913.2 1969054 1970715 R methyl-accepting chemotaxis protein II, aspartate sensor receptor; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting chemotaxis protein II complement(1969054..1970715) Escherichia coli K12 946399 NP_416401.1 CDS cheW NC_000913.2 1970860 1971363 R positive regulator of CheA protein activity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; purine-binding chemotaxis protein complement(1970860..1971363) Escherichia coli K12 946400 NP_416402.1 CDS cheA NC_000913.2 1971384 1973348 R sensory transducer kinase between chemo- signal receptors and CheB and CheY; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein complement(1971384..1973348) Escherichia coli K12 946401 NP_416403.1 CDS motB NC_000913.2 1973353 1974279 R enables flagellar motor rotation, linking torque machinery to cell wall; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; protein that enables flagellar motor rotation complement(1973353..1974279) Escherichia coli K12 946402 NP_416404.1 CDS motA NC_000913.2 1974276 1975163 R proton conductor component of motor; no effect on switching; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; proton conductor component of flagella motor complement(1974276..1975163) Escherichia coli K12 947564 NP_416405.1 CDS flhC NC_000913.2 1975290 1975868 R regulator of flagellar biosynthesis acting on class 2 operons; transcription initiation factor?; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; DNA-binding transcriptional dual regulator with FlhD complement(1975290..1975868) Escherichia coli K12 947280 NP_416406.4 CDS flhD NC_000913.2 1975871 1976221 R regulator of flagellar biosynthesis, acting on class 2 operons; transcriptional initiation factor?; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; DNA-binding transcriptional dual regulator with FlhC complement(1975871..1976221) Escherichia coli K12 945442 NP_416407.1 CDS insB NC_000913.2 1976542 1977045 R IS1 transposase InsAB' complement(1976542..1977045) Escherichia coli K12 945867 NP_416408.1 CDS insA NC_000913.2 1976964 1977239 R KpLE2 phage-like element; IS1 repressor protein InsA complement(1976964..1977239) Escherichia coli K12 945800 NP_416409.1 CDS uspC NC_000913.2 1977777 1978205 D putative regulator; universal stress protein 1977777..1978205 Escherichia coli K12 946404 NP_416410.1 CDS otsA NC_000913.2 1978212 1979636 R GO_process: glucose metabolic process [goid 0006006]; GO_process: response to osmotic stress [goid 0006970]; trehalose-6-phosphate synthase complement(1978212..1979636) Escherichia coli K12 946405 NP_416411.1 CDS otsB NC_000913.2 1979611 1980411 R trehalose-6-phosphate phophatase, biosynthetic; GO_component: cytoplasm [goid 0005737]; GO_process: glucose metabolic process [goid 0006006]; GO_process: response to osmotic stress [goid 0006970]; trehalose-6-phosphate phosphatase, biosynthetic complement(1979611..1980411) Escherichia coli K12 946406 YP_026162.2 CDS araH NC_000913.2 1980578 1981564 R high-affinity L-arabinose transport protein (ABC superfamily, membrane); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused L-arabinose transporter subunits of ABC superfamily: membrane components complement(1980578..1981564) Escherichia coli K12 948923 NP_416413.1 CDS araG NC_000913.2 1981579 1983093 R ATP-binding component of high-affinity L-arabinose transport system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components complement(1981579..1983093) Escherichia coli K12 946408 NP_416414.1 CDS araF NC_000913.2 1983163 1984152 R L-arabinose-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; L-arabinose transporter subunit complement(1983163..1984152) Escherichia coli K12 946409 NP_416415.1 CDS ftnB NC_000913.2 1984949 1985452 D ferritin-like protein; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; predicted ferritin-like protein 1984949..1985452 Escherichia coli K12 946407 NP_416416.2 CDS yecJ NC_000913.2 1985531 1985782 R GO_component: cytoplasm [goid 0005737]; predicted protein complement(1985531..1985782) Escherichia coli K12 946388 NP_416417.1 CDS yecR NC_000913.2 1986246 1986569 D predicted protein 1986246..1986569 Escherichia coli K12 946386 NP_416418.1 CDS ftnA NC_000913.2 1986740 1987237 D cytoplasmic ferritin (an iron storage protein); GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; ferritin iron storage protein (cytoplasmic) 1986740..1987237 Escherichia coli K12 946410 NP_416419.1 CDS yecH NC_000913.2 1987275 1987514 R predicted protein complement(1987275..1987514) Escherichia coli K12 946411 NP_416420.1 CDS tyrP NC_000913.2 1987705 1988916 D tyrosine-specific transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: tyrosine biosynthetic process [goid 0006571]; tyrosine transporter 1987705..1988916 Escherichia coli K12 946412 NP_416421.1 CDS yecA NC_000913.2 1988978 1989643 R conserved metal-binding protein complement(1988978..1989643) Escherichia coli K12 945061 NP_416422.1 CDS pgsA NC_000913.2 1990293 1990841 R phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylglycerophosphate synthetase complement(1990293..1990841) Escherichia coli K12 945791 NP_416423.4 CDS uvrC NC_000913.2 1990898 1992730 R excinuclease ABC, subunit C; repair of UV damage to DNA; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; excinuclease UvrABC, endonuclease subunit complement(1990898..1992730) Escherichia coli K12 947203 NP_416424.1 CDS uvrY NC_000913.2 1992727 1993383 R putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with BarA complement(1992727..1993383) Escherichia coli K12 946424 NP_416425.1 CDS yecF NC_000913.2 1993842 1994066 D predicted protein 1993842..1994066 Escherichia coli K12 946420 NP_416426.1 CDS sdiA NC_000913.2 1994134 1994856 R transcriptional regulator of ftsQAZ gene cluster; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(1994134..1994856) Escherichia coli K12 946421 NP_416427.1 CDS yecC NC_000913.2 1995086 1995838 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily complement(1995086..1995838) Escherichia coli K12 946422 NP_416428.1 CDS yecS NC_000913.2 1995835 1996503 R putative transport system permease protein (former yecC); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(1995835..1996503) Escherichia coli K12 949105 NP_416429.4 CDS dcyD NC_000913.2 1996518 1997504 R putative 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase, PLP-dependent complement(1996518..1997504) Escherichia coli K12 946831 NP_416430.1 CDS fliY NC_000913.2 1997609 1998409 R putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: cysteine biosynthetic process [goid 0019344]; GO_process: cysteine transport [goid 0042883]; cystine transporter subunit complement(1997609..1998409) Escherichia coli K12 948833 NP_416431.2 CDS fliZ NC_000913.2 1998497 1999048 R predicted regulator of FliA activity complement(1998497..1999048) Escherichia coli K12 946833 NP_416432.3 CDS fliA NC_000913.2 1999094 1999813 R flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; RNA polymerase, sigma 28 (sigma F) factor complement(1999094..1999813) Escherichia coli K12 948824 NP_416433.1 CDS fliC NC_000913.2 2000134 2001630 R flagellar biosynthesis; flagellin, filament structural protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar filament structural protein (flagellin) complement(2000134..2001630) Escherichia coli K12 949101 NP_416434.1 CDS fliD NC_000913.2 2001896 2003302 D flagellar biosynthesis; filament capping protein; enables filament assembly; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar filament capping protein 2001896..2003302 Escherichia coli K12 946428 NP_416435.1 CDS fliS NC_000913.2 2003327 2003737 D flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity); GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar protein potentiates polymerization 2003327..2003737 Escherichia coli K12 946429 NP_416436.1 CDS fliT NC_000913.2 2003737 2004102 D flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity); GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; predicted chaperone 2003737..2004102 Escherichia coli K12 946433 NP_416437.1 CDS amyA NC_000913.2 2004180 2005667 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; cytoplasmic alpha-amylase 2004180..2005667 Escherichia coli K12 946434 NP_416438.1 CDS yedD NC_000913.2 2005701 2006114 R predicted protein complement(2005701..2006114) Escherichia coli K12 949082 NP_416439.1 CDS yedE NC_000913.2 2006301 2007506 D putative transport system permease protein; predicted inner membrane protein 2006301..2007506 Escherichia coli K12 945192 NP_416440.1 CDS yedF NC_000913.2 2007503 2007736 D conserved protein 2007503..2007736 Escherichia coli K12 946909 YP_025310.1 CDS yedK NC_000913.2 2007845 2008513 D predicted protein 2007845..2008513 Escherichia coli K12 946435 NP_416442.1 CDS yedL NC_000913.2 2008624 2009103 D predicted acyltransferase 2008624..2009103 Escherichia coli K12 946437 b4495 CDS yedN NC_000913.2 2009247 2010375 R pseudogene, IpaH/YopM family; complement(join(2009247..2009381,2009387..2010064,2010064..2010375)) Escherichia coli K12 2847704 b1936 CDS intG NC_000913.2 2010526 2010687 D predicted defective phage integrase (pseudogene); 2010526..2010687 Escherichia coli K12 946445 NP_416447.1 CDS fliE NC_000913.2 2010724 2011038 R flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar basal-body component complement(2010724..2011038) Escherichia coli K12 946446 NP_416448.1 CDS fliF NC_000913.2 2011253 2012911 D flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein; GO_component: flagellum [goid 0019861]; GO_component: organelle inner membrane [goid 0019866]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar basal-body MS-ring and collar protein 2011253..2012911 Escherichia coli K12 946448 NP_416449.1 CDS fliG NC_000913.2 2012904 2013899 D flagellar biosynthesis, component of motor switching and energizing, enabling rotation and determining its direction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar motor switching and energizing component 2012904..2013899 Escherichia coli K12 946451 NP_416450.2 CDS fliH NC_000913.2 2013892 2014578 D flagellar biosynthesis; export of flagellar proteins?; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2013892..2014578 Escherichia coli K12 946456 NP_416451.1 CDS fliI NC_000913.2 2014578 2015951 D GO_component: flagellum [goid 0019861]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; flagellum-specific ATP synthase 2014578..2015951 Escherichia coli K12 946457 NP_416452.1 CDS fliJ NC_000913.2 2015970 2016413 D flagellar fliJ protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar protein 2015970..2016413 Escherichia coli K12 946454 NP_416453.1 CDS fliK NC_000913.2 2016410 2017537 D GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar hook-length control protein 2016410..2017537 Escherichia coli K12 946449 NP_416454.1 CDS fliL NC_000913.2 2017642 2018106 D flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2017642..2018106 Escherichia coli K12 946443 NP_416455.1 CDS fliM NC_000913.2 2018111 2019115 D flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar motor switching and energizing component 2018111..2019115 Escherichia coli K12 946442 NP_416456.1 CDS fliN NC_000913.2 2019112 2019525 D flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar motor switching and energizing component 2019112..2019525 Escherichia coli K12 946423 NP_416457.4 CDS fliO NC_000913.2 2019528 2019893 D flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2019528..2019893 Escherichia coli K12 946458 NP_416458.1 CDS fliP NC_000913.2 2019893 2020630 D flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2019893..2020630 Escherichia coli K12 946462 NP_416459.1 CDS fliQ NC_000913.2 2020640 2020909 D flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: glycoprotein biosynthetic process [goid 0009101]; GO_process: flagellum biogenesis [goid 0009296]; flagellar biosynthesis protein 2020640..2020909 Escherichia coli K12 946463 NP_416460.1 CDS fliR NC_000913.2 2020917 2021702 D flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; flagellar export pore protein 2020917..2021702 Escherichia coli K12 946464 NP_416461.1 CDS rcsA NC_000913.2 2021992 2022615 D positive regulator for ctr capsule biosynthesis, positive transcription factor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: K antigen biosynthetic process [goid 0009248]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, co-regulator with RcsB 2021992..2022615 Escherichia coli K12 946467 NP_416462.1 CDS dsrB NC_000913.2 2022659 2022847 R GO_component: cytoplasm [goid 0005737]; predicted protein complement(2022659..2022847) Escherichia coli K12 946468 NP_416463.4 CDS yodD NC_000913.2 2023010 2023237 D predicted protein 2023010..2023237 Escherichia coli K12 946469 NP_416464.1 CDS yedP NC_000913.2 2023535 2024350 D conserved protein 2023535..2024350 Escherichia coli K12 946472 NP_416465.2 CDS yedQ NC_000913.2 2024347 2026041 R predicted diguanylate cyclase complement(2024347..2026041) Escherichia coli K12 946471 NP_416466.1 CDS yodC NC_000913.2 2026212 2026394 R predicted protein complement(2026212..2026394) Escherichia coli K12 946466 NP_416467.1 CDS yedI NC_000913.2 2026473 2027390 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(2026473..2027390) Escherichia coli K12 946465 NP_416468.1 CDS yedA NC_000913.2 2027563 2028483 D putative transmembrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 2027563..2028483 Escherichia coli K12 946461 NP_416469.1 CDS vsr NC_000913.2 2028472 2028942 R DNA mismatch endonuclease, patch repair protein; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; DNA mismatch endonuclease of very short patch repair complement(2028472..2028942) Escherichia coli K12 946476 NP_416470.1 CDS dcm NC_000913.2 2028923 2030341 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; DNA cytosine methylase complement(2028923..2030341) Escherichia coli K12 946479 NP_416471.1 CDS yedJ NC_000913.2 2030408 2031103 R predicted phosphohydrolase complement(2030408..2031103) Escherichia coli K12 946478 NP_416472.2 CDS yedR NC_000913.2 2031143 2031508 R predicted inner membrane protein complement(2031143..2031508) Escherichia coli K12 946477 b4496 CDS yedS NC_000913.2 2032075 2033267 D pseudogene, outer membrane protein homolog putative outer membrane protein; join(2032075..2032737,2032737..2033267) Escherichia coli K12 2847763 NP_416476.1 CDS hchA NC_000913.2 2033859 2034710 D Hsp31 molecular chaperone 2033859..2034710 Escherichia coli K12 946481 NP_416477.1 CDS yedV NC_000913.2 2034818 2036176 R putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; predicted sensory kinase in two-component regulatory system with YedW complement(2034818..2036176) Escherichia coli K12 946487 NP_416478.2 CDS yedW NC_000913.2 2036176 2036847 R putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding response regulator in two-component system with YedV complement(2036176..2036847) Escherichia coli K12 946486 NP_416479.1 CDS yedX NC_000913.2 2036980 2037393 D conserved protein 2036980..2037393 Escherichia coli K12 946485 NP_416480.1 CDS yedY NC_000913.2 2037502 2038506 D putative reductase; predicted reductase 2037502..2038506 Escherichia coli K12 946484 NP_416481.1 CDS yedZ NC_000913.2 2038507 2039142 D conserved inner membrane protein 2038507..2039142 Escherichia coli K12 946483 NP_416482.1 CDS yodA NC_000913.2 2039399 2040049 D conserved metal-binding protein 2039399..2040049 Escherichia coli K12 946480 NP_416483.4 CDS yodB NC_000913.2 2040392 2040922 D cytochrome b561 homolog 1; GO_process: cytochrome complex assembly [goid 0017004]; predicted cytochrome 2040392..2040922 Escherichia coli K12 946491 NP_416484.2 CDS mtfA NC_000913.2 2041675 2042472 D conserved protein 2041675..2042472 Escherichia coli K12 946489 NP_416485.4 CDS yeeJ NC_000913.2 2042962 2050038 D putative factor; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; adhesin 2042962..2050038 Escherichia coli K12 946498 b4497 CDS yeeL NC_000913.2 2050300 2051352 R Putative glycosyltransferase; complement(2050300..2051352) Escherichia coli K12 2847764 NP_416488.1 CDS shiA NC_000913.2 2051667 2052983 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: chorismate biosynthetic process [goid 0009423]; shikimate transporter 2051667..2052983 Escherichia coli K12 946495 NP_416489.1 CDS amn NC_000913.2 2053085 2054539 D GO_component: periplasmic space [goid 0042597]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; AMP nucleosidase 2053085..2054539 Escherichia coli K12 946508 NP_416490.1 CDS yeeN NC_000913.2 2054882 2055598 D conserved protein 2054882..2055598 Escherichia coli K12 946493 NP_416491.1 CDS yeeO NC_000913.2 2056227 2057870 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted multidrug efflux system complement(2056227..2057870) Escherichia coli K12 946506 NP_416492.1 CDS cbl NC_000913.2 2057988 2058938 R transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: cysteine biosynthetic process [goid 0019344]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of cysteine biosynthesis complement(2057988..2058938) Escherichia coli K12 946502 NP_416493.1 CDS nac NC_000913.2 2059040 2059957 R nitrogen assimilation control protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator of nitrogen assimilation complement(2059040..2059957) Escherichia coli K12 946501 NP_416494.1 CDS erfK NC_000913.2 2060415 2061347 R conserved protein with NAD(P)-binding Rossmann-fold domain complement(2060415..2061347) Escherichia coli K12 945273 NP_416495.1 CDS cobT NC_000913.2 2061412 2062491 R nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase complement(2061412..2062491) Escherichia coli K12 946517 NP_416496.1 CDS cobS NC_000913.2 2062503 2063246 R cobalamin 5'-phosphate synthase complement(2062503..2063246) Escherichia coli K12 946520 NP_416497.1 CDS cobU NC_000913.2 2063243 2063788 R cobinamide kinase/cobinamide phosphate guanylyltransferase; bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase complement(2063243..2063788) Escherichia coli K12 946519 b4639 CDS yeeH NC_000913.2 2064092 2064178 R pseudogene; complement(2064092..2064178) Escherichia coli K12 5625565 NP_416498.1 CDS insH NC_000913.2 2064329 2065345 R IS5 transposase and trans-activator complement(2064329..2065345) Escherichia coli K12 946507 b4640 CDS yoeG NC_000913.2 2065384 2065916 R pseudogene, CP4-44 putative prophage remnant; complement(join(2065384..2065482,2065482..2065916)) Escherichia coli K12 5625566 b4641 CDS yoeH NC_000913.2 2066285 2066443 R pseudogene, CP4-44 putative prophage remnant; complement(2066285..2066443) Escherichia coli K12 5625567 b4582 CDS yoeA NC_000913.2 2066659 2068498 D CP4-44 prophage; predicted disrupted hemin or colicin receptor interrupted by IS2 and C-terminal deletion; join(2066659..2066962,2068294..2068498) Escherichia coli K12 4056042 NP_416500.1 CDS insD NC_000913.2 2066976 2067881 R KpLE2 phage-like element; IS2 insertion element transposase InsAB' complement(2066976..2067881) Escherichia coli K12 946403 YP_026163.2 CDS insC NC_000913.2 2067839 2068204 R KpLE2 phage-like element; IS2 insertion element repressor InsA complement(2067839..2068204) Escherichia coli K12 946455 b1999 CDS yeeP NC_000913.2 2068684 2069235 D pseudogene, CP4-44 prophage; predicted GTP-binding protein putative histone; 2068684..2069235 Escherichia coli K12 946524 YP_026164.1 CDS flu NC_000913.2 2069563 2072682 D antigen 43, phase-variable bipartite outer membrane fluffing protein; CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter 2069563..2072682 Escherichia coli K12 946540 NP_416505.2 CDS yeeR NC_000913.2 2072803 2074335 D CP4-44 prophage; predicted membrane protein 2072803..2074335 Escherichia coli K12 946512 NP_416506.1 CDS yeeS NC_000913.2 2074332 2074778 D putative DNA repair protein, RADC family; CP4-44 prophage; predicted DNA repair protein 2074332..2074778 Escherichia coli K12 946514 NP_416507.1 CDS yeeT NC_000913.2 2074841 2075062 D CP4-44 prophage; predicted protein 2074841..2075062 Escherichia coli K12 946513 NP_416508.1 CDS yeeU NC_000913.2 2075136 2075504 D putative structural protein; CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system 2075136..2075504 Escherichia coli K12 946510 NP_416509.1 CDS yeeV NC_000913.2 2075593 2075967 D CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system 2075593..2075967 Escherichia coli K12 946534 b2006 CDS yeeW NC_000913.2 2075964 2076131 D CP4-44 prophage; predicted protein; 2075964..2076131 Escherichia coli K12 946535 b4642 CDS yoeD NC_000913.2 2076573 2076701 R pseudogene, CP4-44 putative prophage remnant; complement(2076573..2076701) Escherichia coli K12 5625568 b4538 CDS yoeF NC_000913.2 2076770 2076955 D pseudogene, CP4-44 putative prophage remnant; 2076770..2076955 Escherichia coli K12 1450273 NP_416511.4 CDS yeeX NC_000913.2 2077056 2077385 R putative alpha helix protein; conserved protein complement(2077056..2077385) Escherichia coli K12 946541 NP_416512.1 CDS yeeA NC_000913.2 2077557 2078615 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(2077557..2078615) Escherichia coli K12 946545 NP_416513.1 CDS sbmC NC_000913.2 2078813 2079286 R SbmC protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA gyrase inhibitor complement(2078813..2079286) Escherichia coli K12 946546 NP_416514.4 CDS dacD NC_000913.2 2079405 2080571 R penicillin binding protein 6b; GO_component: peptidoglycan-based cell wall [goid 0009274]; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) complement(2079405..2080571) Escherichia coli K12 946518 NP_416515.1 CDS sbcB NC_000913.2 2080780 2082207 D exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase; GO_process: DNA catabolic process [goid 0006308]; exonuclease I 2080780..2082207 Escherichia coli K12 946529 NP_416516.1 CDS yeeD NC_000913.2 2082250 2082477 R conserved protein complement(2082250..2082477) Escherichia coli K12 946539 NP_416517.1 CDS yeeE NC_000913.2 2082491 2083549 R putative transport system permease protein; predicted inner membrane protein complement(2082491..2083549) Escherichia coli K12 946526 NP_416518.2 CDS yeeF NC_000913.2 2083728 2085086 R putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted amino-acid transporter complement(2083728..2085086) Escherichia coli K12 946533 NP_416519.4 CDS yeeY NC_000913.2 2085353 2086282 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2085353..2086282) Escherichia coli K12 946532 NP_416520.1 CDS yeeZ NC_000913.2 2086328 2087152 R putative enzyme of sugar metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted epimerase, with NAD(P)-binding Rossmann-fold domain complement(2086328..2087152) Escherichia coli K12 946538 YP_588458.1 CDS yoeB NC_000913.2 2087235 2087489 R GO_component: cytoplasm [goid 0005737]; toxin of the YoeB-YefM toxin-antitoxin system complement(2087235..2087489) Escherichia coli K12 1450274 NP_416521.2 CDS yefM NC_000913.2 2087486 2087737 R antitoxin of the YoeB-YefM toxin-antitoxin system complement(2087486..2087737) Escherichia coli K12 946542 NP_416522.1 CDS hisL NC_000913.2 2088020 2088070 D GO_process: histidine biosynthetic process [goid 0000105]; his operon leader peptide 2088020..2088070 Escherichia coli K12 946547 NP_416523.1 CDS hisG NC_000913.2 2088216 2089115 D GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; ATP phosphoribosyltransferase 2088216..2089115 Escherichia coli K12 946549 NP_416524.1 CDS hisD NC_000913.2 2089121 2090425 D L-histidinal:NAD+ oxidoreductase; L-histidinol:NAD+ oxidoreductase; GO_process: histidine biosynthetic process [goid 0000105]; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2089121..2090425 Escherichia coli K12 946531 NP_416525.1 CDS hisC NC_000913.2 2090422 2091492 D GO_process: histidine biosynthetic process [goid 0000105]; histidinol-phosphate aminotransferase 2090422..2091492 Escherichia coli K12 946551 NP_416526.4 CDS hisB NC_000913.2 2091492 2092559 D imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase; GO_process: histidine biosynthetic process [goid 0000105]; fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase 2091492..2092559 Escherichia coli K12 946552 NP_416527.1 CDS hisH NC_000913.2 2092559 2093149 D glutamine amidotransferase subunit of heterodimer with HisF = imidazole glycerol phosphate synthase holoenzyme; GO_process: histidine biosynthetic process [goid 0000105]; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF 2092559..2093149 Escherichia coli K12 946544 NP_416528.2 CDS hisA NC_000913.2 2093149 2093886 D GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase 2093149..2093886 Escherichia coli K12 946521 NP_416529.1 CDS hisF NC_000913.2 2093868 2094644 D imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme; GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; imidazole glycerol phosphate synthase, catalytic subunit with HisH 2093868..2094644 Escherichia coli K12 946516 NP_416530.1 CDS hisI NC_000913.2 2094638 2095249 D phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2094638..2095249 Escherichia coli K12 946515 NP_416531.4 CDS cld NC_000913.2 2095345 2096325 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; regulator of length of O-antigen component of lipopolysaccharide chains complement(2095345..2096325) Escherichia coli K12 946553 NP_416532.1 CDS ugd NC_000913.2 2096471 2097637 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; UDP-glucose 6-dehydrogenase complement(2096471..2097637) Escherichia coli K12 946571 NP_416533.1 CDS gnd NC_000913.2 2097886 2099292 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, oxidative branch [goid 0009051]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; gluconate-6-phosphate dehydrogenase, decarboxylating complement(2097886..2099292) Escherichia coli K12 946554 b4571 CDS wbbL NC_000913.2 2099420 2101413 R lipopolysaccharide biosynthesis protein, N-ter fragment (pseudogene); complement(join(2099420..2099768,2100968..2101413)) Escherichia coli K12 4056030 NP_416535.1 CDS insH NC_000913.2 2099919 2100935 R IS5 transposase and trans-activator complement(2099919..2100935) Escherichia coli K12 946577 NP_416536.1 CDS wbbK NC_000913.2 2101415 2102533 R putative glucose transferase; lipopolysaccharide biosynthesis protein complement(2101415..2102533) Escherichia coli K12 946555 NP_416537.1 CDS wbbJ NC_000913.2 2102518 2103108 R putative O-acetyl transferase; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; predicted acyl transferase complement(2102518..2103108) Escherichia coli K12 946556 NP_416538.1 CDS wbbI NC_000913.2 2103089 2104081 R putative Galf transferase; conserved protein complement(2103089..2104081) Escherichia coli K12 947041 NP_416539.1 CDS rfc NC_000913.2 2104084 2105250 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_function: O antigen polymerase activity [goid 0008755]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; O-antigen polymerase complement(2104084..2105250) Escherichia coli K12 945179 NP_416540.1 CDS glf NC_000913.2 2105250 2106353 R UDP-galactopyranose mutase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; UDP-galactopyranose mutase, FAD/NAD(P)-binding complement(2105250..2106353) Escherichia coli K12 945235 NP_416541.1 CDS rfbX NC_000913.2 2106361 2107608 R putative O-antigen transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; predicted polisoprenol-linked O-antigen transporter complement(2106361..2107608) Escherichia coli K12 946557 NP_416542.1 CDS rfbC NC_000913.2 2107605 2108162 R dTDP-6-deoxy-D-glucose-3,5 epimerase; GO_component: cytoplasm [goid 0005737]; GO_function: protein homodimerization activity [goid 0042803]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; GO_process: dTDP-rhamnose biosynthetic process [goid 0019305]; dTDP-4-deoxyrhamnose-3,5-epimerase complement(2107605..2108162) Escherichia coli K12 947482 NP_416543.1 CDS rfbA NC_000913.2 2108162 2109043 R dTDP-glucose pyrophosphorylase; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_function: magnesium ion binding [goid 0000287]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: dTDP-rhamnose biosynthetic process [goid 0019305]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; glucose-1-phosphate thymidylyltransferase complement(2108162..2109043) Escherichia coli K12 945154 NP_416544.1 CDS rfbD NC_000913.2 2109101 2110000 R dTDP-6-deoxy-L-mannose-dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase complement(2109101..2110000) Escherichia coli K12 947117 NP_416545.1 CDS rfbB NC_000913.2 2110000 2111085 R dTDP-glucose 4,6 dehydratase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: NAD biosynthetic process [goid 0009435]; dTDP-glucose 4,6 dehydratase, NAD(P)-binding complement(2110000..2111085) Escherichia coli K12 945276 NP_416546.1 CDS galF NC_000913.2 2111458 2112351 R GO_component: cytoplasm [goid 0005737]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; predicted subunit with GalU complement(2111458..2112351) Escherichia coli K12 946560 NP_416547.1 CDS wcaM NC_000913.2 2112526 2113920 R putative colanic acid biosynthesis protein; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted colanic acid biosynthesis protein complement(2112526..2113920) Escherichia coli K12 946561 NP_416548.1 CDS wcaL NC_000913.2 2113931 2115151 R putative colanic acid biosynthesis glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase complement(2113931..2115151) Escherichia coli K12 946565 NP_416549.1 CDS wcaK NC_000913.2 2115148 2116428 R putative galactokinase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted pyruvyl transferase complement(2115148..2116428) Escherichia coli K12 946569 NP_416550.1 CDS wzxC NC_000913.2 2116704 2118182 R probable export protein; colanic acid exporter complement(2116704..2118182) Escherichia coli K12 946581 NP_416551.1 CDS wcaJ NC_000913.2 2118184 2119578 R putative UDP-glucose lipid carrier transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted UDP-glucose lipid carrier transferase complement(2118184..2119578) Escherichia coli K12 946583 NP_416552.1 CDS cpsG NC_000913.2 2119633 2121003 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; phosphomannomutase complement(2119633..2121003) Escherichia coli K12 946574 NP_416553.1 CDS cpsB NC_000913.2 2121108 2122544 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: response to desiccation [goid 0009269]; mannose-1-phosphate guanyltransferase complement(2121108..2122544) Escherichia coli K12 946580 NP_416554.1 CDS wcaI NC_000913.2 2122547 2123770 R putative colanic biosynthesis glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase complement(2122547..2123770) Escherichia coli K12 946588 NP_416555.2 CDS gmm NC_000913.2 2123767 2124246 R GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: colanic acid biosynthetic process [goid 0009242]; GDP-mannose mannosyl hydrolase complement(2123767..2124246) Escherichia coli K12 946559 NP_416556.1 CDS fcl NC_000913.2 2124249 2125214 R GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase complement(2124249..2125214) Escherichia coli K12 946563 NP_416557.1 CDS gmd NC_000913.2 2125217 2126338 R GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: NAD biosynthetic process [goid 0009435]; GO_process: response to desiccation [goid 0009269]; GDP-D-mannose dehydratase, NAD(P)-binding complement(2125217..2126338) Escherichia coli K12 946562 NP_416558.1 CDS wcaF NC_000913.2 2126364 2126912 R putative transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted acyl transferase complement(2126364..2126912) Escherichia coli K12 946578 NP_416559.1 CDS wcaE NC_000913.2 2126928 2127674 R putative colanic acid biosynthesis glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase complement(2126928..2127674) Escherichia coli K12 946543 NP_416560.1 CDS wcaD NC_000913.2 2127685 2128902 R putative colanic acid polymerase; predicted colanic acid polymerase complement(2127685..2128902) Escherichia coli K12 946550 NP_416561.1 CDS wcaC NC_000913.2 2128877 2130094 R putative glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase complement(2128877..2130094) Escherichia coli K12 946579 NP_416562.1 CDS wcaB NC_000913.2 2130091 2130579 R putative transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted acyl transferase complement(2130091..2130579) Escherichia coli K12 946573 NP_416563.1 CDS wcaA NC_000913.2 2130582 2131421 R putative regulator; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase complement(2130582..2131421) Escherichia coli K12 946570 NP_416564.4 CDS wzc NC_000913.2 2131514 2133676 R GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: protein modification [goid 0006464]; protein-tyrosine kinase complement(2131514..2133676) Escherichia coli K12 946567 NP_416565.1 CDS wzb NC_000913.2 2133679 2134122 R low molecular weight protein-tyrosine-phosphatase; GO_process: colanic acid biosynthetic process [goid 0009242]; protein-tyrosine phosphatase complement(2133679..2134122) Escherichia coli K12 946564 NP_416566.1 CDS wza NC_000913.2 2134128 2135267 R putative polysaccharide export protein; GO_process: colanic acid biosynthetic process [goid 0009242]; lipoprotein required for capsular polysaccharide translocation through the outer membrane complement(2134128..2135267) Escherichia coli K12 946558 NP_416567.4 CDS yegH NC_000913.2 2135926 2137509 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; fused predicted membrane protein/predicted membrane protein 2135926..2137509 Escherichia coli K12 946566 NP_416568.1 CDS asmA NC_000913.2 2137783 2139636 R suppressor of ompF assembly mutants; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; predicted assembly protein complement(2137783..2139636) Escherichia coli K12 946582 NP_416569.1 CDS dcd NC_000913.2 2139658 2140239 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 2'-deoxycytidine 5'-triphosphate deaminase complement(2139658..2140239) Escherichia coli K12 946593 NP_416570.2 CDS udk NC_000913.2 2140331 2140972 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uridine/cytidine kinase complement(2140331..2140972) Escherichia coli K12 946597 NP_416571.1 CDS yegE NC_000913.2 2141290 2144607 D putative sensor-type protein; GO_process: protein modification [goid 0006464]; predicted diguanylate cyclase, GGDEF domain signalling protein 2141290..2144607 Escherichia coli K12 946600 NP_416572.1 CDS alkA NC_000913.2 2144716 2145564 R 3-methyl-adenine DNA glycosylase II, inducible; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; 3-methyl-adenine DNA glycosylase II complement(2144716..2145564) Escherichia coli K12 947371 NP_416573.4 CDS yegD NC_000913.2 2145698 2147050 D putative heat shock protein; GO_process: protein folding [goid 0006457]; predicted chaperone 2145698..2147050 Escherichia coli K12 947234 NP_416574.1 CDS yegI NC_000913.2 2147063 2149009 R putative chaperonin; conserved protein complement(2147063..2149009) Escherichia coli K12 947159 NP_416575.1 CDS yegJ NC_000913.2 2149209 2149670 D predicted protein 2149209..2149670 Escherichia coli K12 947201 NP_416576.1 CDS yegK NC_000913.2 2149735 2150496 R predicted protein complement(2149735..2150496) Escherichia coli K12 947269 NP_416577.1 CDS yegL NC_000913.2 2150493 2151152 R conserved protein complement(2150493..2151152) Escherichia coli K12 946602 NP_416578.2 CDS mdtA NC_000913.2 2152040 2153287 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system, subunit A 2152040..2153287 Escherichia coli K12 946604 NP_416579.1 CDS mdtB NC_000913.2 2153287 2156409 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; multidrug efflux system, subunit B 2153287..2156409 Escherichia coli K12 946606 NP_416580.1 CDS mdtC NC_000913.2 2156410 2159487 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; multidrug efflux system, subunit C 2156410..2159487 Escherichia coli K12 946608 NP_416581.1 CDS mdtD NC_000913.2 2159488 2160903 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 2159488..2160903 Escherichia coli K12 946601 NP_416582.1 CDS baeS NC_000913.2 2160900 2162303 D sensor protein (for BaeR); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with BaeR 2160900..2162303 Escherichia coli K12 946611 NP_416583.1 CDS baeR NC_000913.2 2162300 2163022 D transcriptional response regulatory protein (sensor BaeS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with BaeS 2162300..2163022 Escherichia coli K12 946605 NP_416584.4 CDS yegP NC_000913.2 2163213 2163545 D predicted protein 2163213..2163545 Escherichia coli K12 947095 NP_416585.1 CDS yegQ NC_000913.2 2163692 2165053 D predicted peptidase 2163692..2165053 Escherichia coli K12 946609 NP_416586.1 CDS ogrK NC_000913.2 2165326 2165544 R prophage P2 ogr protein; DNA-binding transcriptional regulator prophage P2 remnant complement(2165326..2165544) Escherichia coli K12 945404 b2083 CDS yegZ NC_000913.2 2165626 2165838 R pseudogene, gpD phage P2-like protein D; complement(2165626..2165838) Escherichia coli K12 949050 NP_416589.2 CDS yegR NC_000913.2 2166013 2166330 R predicted protein complement(2166013..2166330) Escherichia coli K12 946613 NP_416590.1 CDS yegS NC_000913.2 2166736 2167635 D phosphatidylglycerol kinase, metal-dependent 2166736..2167635 Escherichia coli K12 946626 b4498 CDS gatR NC_000913.2 2167717 2169751 R pseudogene, repressor for gat operon split galactitol utilization operon repressor, fragment 2 split galactitol utilization operon repressor, interrupted interrupted by IS3; complement(join(2167717..2168191,2169453..2169751)) Escherichia coli K12 2847672 NP_416592.1 CDS insE NC_000913.2 2168251 2168559 D IS3 element protein InsE 2168251..2168559 Escherichia coli K12 946616 NP_416593.1 CDS insF NC_000913.2 2168556 2169422 D IS3 element protein InsF 2168556..2169422 Escherichia coli K12 946629 NP_416594.1 CDS gatD NC_000913.2 2169857 2170897 R galactitol-1-phosphate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding complement(2169857..2170897) Escherichia coli K12 946598 NP_416595.1 CDS gatC NC_000913.2 2170945 2172300 R PTS system galactitol-specific enzyme IIC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-specific enzyme IIC component of PTS complement(2170945..2172300) Escherichia coli K12 946603 NP_416596.1 CDS gatB NC_000913.2 2172304 2172588 R galactitol-specific enzyme IIB of phosphotransferase system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-specific enzyme IIB component of PTS complement(2172304..2172588) Escherichia coli K12 946610 NP_416597.1 CDS gatA NC_000913.2 2172619 2173071 R galactitol-specific enzyme IIA of phosphotransferase system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-specific enzyme IIA component of PTS complement(2172619..2173071) Escherichia coli K12 946633 NP_416598.1 CDS gatZ NC_000913.2 2173081 2174343 R putative tagatose 6-phosphate kinase 1; GO_process: carbohydrate catabolic process [goid 0016052]; D-tagatose 1,6-bisphosphate aldolase 2, subunit complement(2173081..2174343) Escherichia coli K12 946641 NP_416599.2 CDS gatY NC_000913.2 2174372 2175226 R tagatose-bisphosphate aldolase 1; GO_process: carbohydrate catabolic process [goid 0016052]; D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit complement(2174372..2175226) Escherichia coli K12 946636 NP_416600.4 CDS fbaB NC_000913.2 2175534 2176586 R GO_process: glycolysis [goid 0006096]; fructose-bisphosphate aldolase class I complement(2175534..2176586) Escherichia coli K12 946632 NP_416601.1 CDS yegT NC_000913.2 2176843 2178120 D putative nucleoside permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted nucleoside transporter 2176843..2178120 Escherichia coli K12 946638 NP_416602.1 CDS yegU NC_000913.2 2178117 2179121 D predicted hydrolase 2178117..2179121 Escherichia coli K12 946630 NP_416603.1 CDS yegV NC_000913.2 2179118 2180083 D putative kinase; predicted kinase 2179118..2180083 Escherichia coli K12 946637 NP_416604.1 CDS yegW NC_000913.2 2180057 2180803 R putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2180057..2180803) Escherichia coli K12 946639 NP_416605.2 CDS yegX NC_000913.2 2180855 2181673 R predicted hydrolase complement(2180855..2181673) Escherichia coli K12 945543 NP_416606.1 CDS thiD NC_000913.2 2181738 2182538 R phosphomethylpyrimidine kinase; GO_process: thiamin biosynthetic process [goid 0009228]; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase complement(2181738..2182538) Escherichia coli K12 946459 NP_416607.1 CDS thiM NC_000913.2 2182535 2183323 R GO_process: thiamin biosynthetic process [goid 0009228]; hydoxyethylthiazole kinase complement(2182535..2183323) Escherichia coli K12 945142 NP_416608.1 CDS rcnR NC_000913.2 2183546 2183818 R conserved protein complement(2183546..2183818) Escherichia coli K12 947114 NP_416609.1 CDS rcnA NC_000913.2 2183939 2184763 D GO_component: peptidoglycan-based cell wall [goid 0009274]; membrane protein conferring nickel and cobalt resistance 2183939..2184763 Escherichia coli K12 949078 NP_416610.4 CDS yohN NC_000913.2 2184982 2185320 D predicted protein 2184982..2185320 Escherichia coli K12 949080 NP_416611.1 CDS yehA NC_000913.2 2185402 2186436 R putative type-1 fimbrial protein; predicted fimbrial-like adhesin protein complement(2185402..2186436) Escherichia coli K12 946642 NP_416612.1 CDS yehB NC_000913.2 2186452 2188932 R putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein complement(2186452..2188932) Escherichia coli K12 946617 NP_416613.1 CDS yehC NC_000913.2 2188948 2189667 R putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone complement(2188948..2189667) Escherichia coli K12 946621 NP_416614.1 CDS yehD NC_000913.2 2189702 2190244 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(2189702..2190244) Escherichia coli K12 946619 NP_416615.1 CDS yehE NC_000913.2 2190537 2190818 R predicted protein complement(2190537..2190818) Escherichia coli K12 946615 NP_416616.4 CDS mrp NC_000913.2 2191081 2192190 R putative ATPase; antiporter inner membrane protein complement(2191081..2192190) Escherichia coli K12 946627 NP_416617.1 CDS metG NC_000913.2 2192322 2194355 D methionine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; methionyl-tRNA synthetase 2192322..2194355 Escherichia coli K12 946643 b4499 CDS yehH NC_000913.2 2194496 2198291 D pseudogene molybdate metabolism regulator, first fragment molybdate metabolism regulator, second fragment 2; join(2194496..2197342,2197344..2198291) Escherichia coli K12 2847726 NP_416621.1 CDS yehI NC_000913.2 2198301 2201933 D putative regulator; conserved protein 2198301..2201933 Escherichia coli K12 946649 YP_588459.1 CDS yehK NC_000913.2 2201994 2202311 D GO_component: cytoplasm [goid 0005737]; predicted protein 2201994..2202311 Escherichia coli K12 4056035 NP_416623.2 CDS yehL NC_000913.2 2202618 2203706 D GO_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; predicted transporter subunit: ATP-binding component of ABC superfamily 2202618..2203706 Escherichia coli K12 946656 NP_416624.1 CDS yehM NC_000913.2 2203717 2205996 D predicted protein 2203717..2205996 Escherichia coli K12 946651 NP_416625.1 CDS yehP NC_000913.2 2205989 2207125 D conserved protein 2205989..2207125 Escherichia coli K12 946652 b2122 CDS yehQ NC_000913.2 2207122 2209122 D predicted protein; 2207122..2209122 Escherichia coli K12 946654 NP_416627.2 CDS yehR NC_000913.2 2209247 2209708 D conserved protein 2209247..2209708 Escherichia coli K12 949023 NP_416628.1 CDS yehS NC_000913.2 2209748 2210218 R conserved protein complement(2209748..2210218) Escherichia coli K12 949026 NP_416629.4 CDS yehT NC_000913.2 2210265 2210984 R predicted response regulator in two-component system withYehU complement(2210265..2210984) Escherichia coli K12 949024 NP_416630.1 CDS yehU NC_000913.2 2210981 2212666 R putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; predicted sensory kinase in two-component system with YehT complement(2210981..2212666) Escherichia coli K12 949027 NP_416631.1 CDS mlrA NC_000913.2 2212888 2213619 D putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator 2212888..2213619 Escherichia coli K12 949029 YP_588460.1 CDS yohO NC_000913.2 2213679 2213786 D predicted protein 2213679..2213786 Escherichia coli K12 1450279 NP_416632.1 CDS yehW NC_000913.2 2213767 2214498 R putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(2213767..2214498) Escherichia coli K12 949028 NP_416633.1 CDS yehX NC_000913.2 2214503 2215429 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily complement(2214503..2215429) Escherichia coli K12 946659 NP_416634.1 CDS yehY NC_000913.2 2215422 2216579 R putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(2215422..2216579) Escherichia coli K12 946660 NP_416635.1 CDS osmF NC_000913.2 2216586 2217503 R putative transport system permease protein; GO_component: periplasmic space [goid 0042597]; predicted transporter subunit: periplasmic-binding component of ABC superfamily complement(2216586..2217503) Escherichia coli K12 946681 NP_416636.1 CDS bglX NC_000913.2 2217714 2220011 R GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; beta-D-glucoside glucohydrolase, periplasmic complement(2217714..2220011) Escherichia coli K12 946682 NP_416637.1 CDS dld NC_000913.2 2220207 2221922 D D-lactate dehydrogenase, FAD protein, NADH independent; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; D-lactate dehydrogenase, FAD-binding, NADH independent 2220207..2221922 Escherichia coli K12 946653 NP_416638.4 CDS pbpG NC_000913.2 2221960 2222892 R penicillin-binding protein 7; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine endopeptidase complement(2221960..2222892) Escherichia coli K12 946662 NP_416639.2 CDS yohC NC_000913.2 2223066 2223653 R predicted inner membrane protein complement(2223066..2223653) Escherichia coli K12 946666 NP_416640.2 CDS yohD NC_000913.2 2223823 2224401 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 2223823..2224401 Escherichia coli K12 946661 NP_416641.1 CDS yohF NC_000913.2 2224531 2225292 R putative oxidoreductase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(2224531..2225292) Escherichia coli K12 949126 b2139 CDS mdtQ NC_000913.2 2225345 2226780 R conserved protein putative channel/filament proteins; GO_component: peptidoglycan-based cell wall [goid 0009274]; complement(join(2225345..2226631,2226631..2226780)) Escherichia coli K12 949123 NP_416645.1 CDS dusC NC_000913.2 2227460 2228407 R putative regulator protein; tRNA-dihydrouridine synthase C complement(2227460..2228407) Escherichia coli K12 945458 NP_416646.1 CDS yohJ NC_000913.2 2228646 2229044 D conserved inner membrane protein 2228646..2229044 Escherichia coli K12 949127 NP_416647.1 CDS yohK NC_000913.2 2229041 2229736 D putative seritonin transporter; predicted inner membrane protein 2229041..2229736 Escherichia coli K12 949125 NP_416648.1 CDS cdd NC_000913.2 2229866 2230750 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytidine/deoxycytidine deaminase 2229866..2230750 Escherichia coli K12 946663 NP_416649.1 CDS sanA NC_000913.2 2230900 2231619 D vancomycin sensitivity; GO_process: response to drug [goid 0042493]; predicted protein 2230900..2231619 Escherichia coli K12 949003 NP_416650.1 CDS yeiS NC_000913.2 2231622 2231861 D predicted inner membrane protein 2231622..2231861 Escherichia coli K12 948983 NP_416651.1 CDS yeiT NC_000913.2 2232055 2233293 D putative oxidoreductase; predicted oxidoreductase 2232055..2233293 Escherichia coli K12 949049 NP_416652.4 CDS yeiA NC_000913.2 2233287 2234522 D putative oxidoreductase; predicted oxidoreductase 2233287..2234522 Escherichia coli K12 949037 NP_416653.1 CDS mglC NC_000913.2 2234765 2235775 R methyl-galactoside transport and galactose taxis; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; methyl-galactoside transporter subunit complement(2234765..2235775) Escherichia coli K12 949039 NP_416654.1 CDS mglA NC_000913.2 2235791 2237311 R ATP-binding component of methyl-galactoside transport and galactose taxis; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components complement(2235791..2237311) Escherichia coli K12 949036 NP_416655.1 CDS mglB NC_000913.2 2237372 2238370 R galactose-binding transport protein; receptor for galactose taxis; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein folding [goid 0006457]; methyl-galactoside transporter subunit complement(2237372..2238370) Escherichia coli K12 949041 NP_416656.1 CDS galS NC_000913.2 2238650 2239690 R mgl repressor, galactose operon inducer; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(2238650..2239690) Escherichia coli K12 949043 NP_416657.1 CDS yeiB NC_000913.2 2239832 2240989 R conserved inner membrane protein complement(2239832..2240989) Escherichia coli K12 949044 NP_416658.1 CDS folE NC_000913.2 2241006 2241674 R GO_process: folic acid biosynthetic process [goid 0046656]; GTP cyclohydrolase I complement(2241006..2241674) Escherichia coli K12 949040 NP_416659.1 CDS yeiG NC_000913.2 2241932 2242768 D putative esterase; predicted esterase 2241932..2242768 Escherichia coli K12 949045 NP_416660.1 CDS cirA NC_000913.2 2242800 2244791 R outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; ferric iron-catecholate outer membrane transporter complement(2242800..2244791) Escherichia coli K12 949042 NP_416661.1 CDS lysP NC_000913.2 2245085 2246554 R lysine-specific permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; lysine transporter complement(2245085..2246554) Escherichia coli K12 946667 NP_416662.1 CDS yeiE NC_000913.2 2246759 2247640 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2246759..2247640) Escherichia coli K12 946657 NP_416663.1 CDS yeiH NC_000913.2 2247739 2248788 D conserved inner membrane protein 2247739..2248788 Escherichia coli K12 946668 NP_416664.1 CDS nfo NC_000913.2 2248862 2249719 D endonuclease IV; GO_process: DNA catabolic process [goid 0006308]; GO_process: response to radiation [goid 0009314]; endonuclease IV with intrinsic 3'-5' exonuclease activity 2248862..2249719 Escherichia coli K12 946669 NP_416665.1 CDS yeiI NC_000913.2 2249722 2250810 D putative kinase; predicted kinase 2249722..2250810 Escherichia coli K12 946640 NP_416666.1 CDS nupX NC_000913.2 2250917 2252167 R putative pyrimidine nucleoside transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted nucleoside transporter complement(2250917..2252167) Escherichia coli K12 946655 NP_416667.1 CDS rihB NC_000913.2 2252267 2253208 R ribonucleoside hydrolase 2 complement(2252267..2253208) Escherichia coli K12 946646 NP_416668.3 CDS yeiL NC_000913.2 2253377 2254036 D stationary phase nitrogen starvation regulator; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-binding transcriptional activator of stationary phase nitrogen survival 2253377..2254036 Escherichia coli K12 946670 NP_416669.1 CDS yeiM NC_000913.2 2254107 2255357 R putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted nucleoside transporter complement(2254107..2255357) Escherichia coli K12 946671 NP_416670.1 CDS yeiN NC_000913.2 2255451 2256389 R conserved protein complement(2255451..2256389) Escherichia coli K12 946699 NP_416671.1 CDS yeiC NC_000913.2 2256377 2257318 R putative kinase; predicted kinase complement(2256377..2257318) Escherichia coli K12 946664 NP_416672.1 CDS fruA NC_000913.2 2257741 2259432 R PTS system, fructose-specific transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused fructose-specific PTS enzymes: IIBcomponent/IIC components complement(2257741..2259432) Escherichia coli K12 946672 NP_416673.1 CDS fruK NC_000913.2 2259449 2260387 R GO_process: glycolysis [goid 0006096]; fructose-1-phosphate kinase complement(2259449..2260387) Escherichia coli K12 946676 NP_416674.1 CDS fruB NC_000913.2 2260387 2261517 R PTS system, fructose-specific IIA/fpr component; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused fructose-specific PTS enzymes: IIA component/HPr component complement(2260387..2261517) Escherichia coli K12 946677 NP_416675.1 CDS setB NC_000913.2 2261885 2263066 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; lactose/glucose efflux system 2261885..2263066 Escherichia coli K12 946673 YP_588461.1 CDS yeiW NC_000913.2 2263063 2263317 R GO_component: cytoplasm [goid 0005737]; conserved protein complement(2263063..2263317) Escherichia coli K12 4056031 NP_416676.4 CDS yeiP NC_000913.2 2263472 2264044 D putative elongation factor; GO_process: translation [goid 0006412]; predicted elongtion factor 2263472..2264044 Escherichia coli K12 946674 NP_416677.1 CDS yeiQ NC_000913.2 2264267 2265733 D putative oxidoreductase; predicted dehydrogenase, NAD-dependent 2264267..2265733 Escherichia coli K12 946688 NP_416678.1 CDS yeiR NC_000913.2 2265851 2266837 D predicted enzyme 2265851..2266837 Escherichia coli K12 946701 NP_416679.4 CDS yeiU NC_000913.2 2266876 2267589 D undecaprenyl pyrophosphate phosphatase 2266876..2267589 Escherichia coli K12 946693 NP_416680.1 CDS spr NC_000913.2 2268001 2268567 D putative lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted peptidase, outer membrane lipoprotein 2268001..2268567 Escherichia coli K12 946686 NP_416681.1 CDS rtn NC_000913.2 2268748 2270304 D conserved protein 2268748..2270304 Escherichia coli K12 946695 NP_416682.4 CDS yejA NC_000913.2 2270386 2272200 D periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; predicted oligopeptide transporter subunit 2270386..2272200 Escherichia coli K12 946675 NP_416683.1 CDS yejB NC_000913.2 2272201 2273295 D putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted oligopeptide transporter subunit 2272201..2273295 Escherichia coli K12 946679 NP_416684.1 CDS yejE NC_000913.2 2273295 2274320 D putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted oligopeptide transporter subunit 2273295..2274320 Escherichia coli K12 946683 NP_416685.1 CDS yejF NC_000913.2 2274322 2275911 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components 2274322..2275911 Escherichia coli K12 946689 NP_416686.1 CDS yejG NC_000913.2 2275915 2276259 R predicted protein complement(2275915..2276259) Escherichia coli K12 945319 NP_416687.1 CDS bcr NC_000913.2 2276592 2277782 R bicyclomycin resistance protein; transmembrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; bicyclomycin/multidrug efflux system complement(2276592..2277782) Escherichia coli K12 944808 NP_416688.1 CDS rsuA NC_000913.2 2277810 2278505 R 16S pseudouridylate 516 synthase; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 16S rRNA pseudouridylate 516 synthase complement(2277810..2278505) Escherichia coli K12 945378 NP_416689.1 CDS yejH NC_000913.2 2278654 2280414 D putative ATP-dependent helicase; predicted ATP-dependet helicase 2278654..2280414 Escherichia coli K12 945529 NP_416690.1 CDS rplY NC_000913.2 2280539 2280823 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L25 2280539..2280823 Escherichia coli K12 945618 NP_416691.1 CDS yejK NC_000913.2 2280962 2281969 R protein present in spermidine nucleoids; GO_component: cytoplasm [goid 0005737]; nucleotide associated protein complement(2280962..2281969) Escherichia coli K12 946690 NP_416692.1 CDS yejL NC_000913.2 2282151 2282378 D conserved protein 2282151..2282378 Escherichia coli K12 946694 NP_416693.1 CDS yejM NC_000913.2 2282398 2284158 D putative sulfatase; predicted hydrolase, inner membrane 2282398..2284158 Escherichia coli K12 946685 b2190 CDS yejO NC_000913.2 2284412 2288202 R predicted autotransporter outer membrane protein;putative transport; Not classified putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; complement(join(2284412..2286936,2288136..2288202)) Escherichia coli K12 946867 NP_416696.1 CDS insH NC_000913.2 2287087 2288103 R IS5 transposase and trans-activator complement(2287087..2288103) Escherichia coli K12 949121 NP_416697.1 CDS narP NC_000913.2 2288522 2289169 D nitrate/nitrite response regulator (sensor NarQ); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with NarQ or NarX 2288522..2289169 Escherichia coli K12 949081 NP_416698.1 CDS ccmH NC_000913.2 2289380 2290432 R possible subunit of heme lyase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase, CcmH subunit complement(2289380..2290432) Escherichia coli K12 946623 NP_416699.1 CDS ccmG NC_000913.2 2290429 2290986 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; periplasmic thioredoxin of cytochrome c-type biogenesis complement(2290429..2290986) Escherichia coli K12 949073 NP_416700.1 CDS ccmF NC_000913.2 2290983 2292926 R cytochrome c-type biogenesis protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; heme lyase, CcmF subunit complement(2290983..2292926) Escherichia coli K12 948783 NP_416701.1 CDS ccmE NC_000913.2 2292923 2293402 R cytochrome c biogenesis, possible subunit of a heme lyase; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; periplasmic heme chaperone complement(2292923..2293402) Escherichia coli K12 946697 NP_416702.1 CDS ccmD NC_000913.2 2293399 2293608 R heme exporter protein C; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; cytochrome c biogenesis protein complement(2293399..2293608) Escherichia coli K12 946709 NP_416703.1 CDS ccmC NC_000913.2 2293605 2294342 R heme exporter protein C; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme exporter subunit complement(2293605..2294342) Escherichia coli K12 946703 NP_416704.1 CDS ccmB NC_000913.2 2294384 2295046 R heme exporter protein B, cytochrome c-type biogenesis protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme exporter subunit complement(2294384..2295046) Escherichia coli K12 946692 NP_416705.2 CDS ccmA NC_000913.2 2295043 2295666 R ATP binding protein of heme exporter A; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme exporter subunit complement(2295043..2295666) Escherichia coli K12 946714 NP_416706.1 CDS napC NC_000913.2 2295679 2296281 R cytochrome c-type protein; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrate reductase, cytochrome c-type, periplasmic complement(2295679..2296281) Escherichia coli K12 946706 NP_416707.4 CDS napB NC_000913.2 2296291 2296740 R cytochrome c-type protein; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrate reductase, small, cytochrome C550 subunit, periplasmic complement(2296291..2296740) Escherichia coli K12 946698 NP_416708.1 CDS napH NC_000913.2 2296737 2297600 R ferredoxin-type protein: electron transfer; GO_function: electron carrier activity [goid 0009055]; GO_process: anaerobic respiration [goid 0009061]; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) complement(2296737..2297600) Escherichia coli K12 945984 NP_416709.1 CDS napG NC_000913.2 2297587 2298282 R ferredoxin-type protein: electron transfer; GO_function: electron carrier activity [goid 0009055]; GO_process: anaerobic respiration [goid 0009061]; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) complement(2297587..2298282) Escherichia coli K12 945544 NP_416710.1 CDS napA NC_000913.2 2298289 2300775 R probable nitrate reductase 3; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase, periplasmic, large subunit complement(2298289..2300775) Escherichia coli K12 947093 NP_416711.1 CDS napD NC_000913.2 2300772 2301035 R GO_component: periplasmic space [goid 0042597]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; assembly protein for periplasmic nitrate reductase complement(2300772..2301035) Escherichia coli K12 945187 NP_416712.1 CDS napF NC_000913.2 2301025 2301519 R ferredoxin-type protein: electron transfer; GO_function: electron carrier activity [goid 0009055]; GO_process: anaerobic respiration [goid 0009061]; ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) complement(2301025..2301519) Escherichia coli K12 946813 YP_001165322.1 CDS yojO NC_000913.2 2301628 2301792 D hypothetical protein 2301628..2301792 Escherichia coli K12 5061514 NP_416713.1 CDS eco NC_000913.2 2301927 2302415 D GO_component: periplasmic space [goid 0042597]; ecotin, a serine protease inhibitor 2301927..2302415 Escherichia coli K12 946700 NP_416714.1 CDS mqo NC_000913.2 2303130 2304776 R GO_process: tricarboxylic acid cycle [goid 0006099]; malate dehydrogenase, FAD/NAD(P)-binding domain complement(2303130..2304776) Escherichia coli K12 946702 NP_416715.1 CDS yojI NC_000913.2 2304994 2306637 R putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted multidrug transport subunits of ABC superfamily: membrane component/ATP-binding component complement(2304994..2306637) Escherichia coli K12 946705 NP_416716.1 CDS alkB NC_000913.2 2306713 2307363 R DNA repair system specific for alkylated DNA; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions complement(2306713..2307363) Escherichia coli K12 946708 NP_416717.1 CDS ada NC_000913.2 2307363 2308427 R O6-methylguanine-DNA methyltransferase; transcription activator/repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: DNA repair [goid 0006281]; GO_process: transcription [goid 0006350]; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase complement(2307363..2308427) Escherichia coli K12 946710 NP_416718.1 CDS apbE NC_000913.2 2308501 2309556 R GO_process: thiamin biosynthetic process [goid 0009228]; predicted thiamine biosynthesis lipoprotein complement(2308501..2309556) Escherichia coli K12 946711 NP_416719.1 CDS ompC NC_000913.2 2309668 2310771 R outer membrane protein 1b (Ib;c); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane porin protein C complement(2309668..2310771) Escherichia coli K12 946716 NP_416720.1 CDS rcsD NC_000913.2 2311510 2314182 D putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2311510..2314182 Escherichia coli K12 946717 NP_416721.1 CDS rcsB NC_000913.2 2314199 2314849 D positive response regulator for colanic capsule biosynthesis, (sensor, RcsC); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with RcsC and YojN 2314199..2314849 Escherichia coli K12 947441 NP_416722.2 CDS rcsC NC_000913.2 2315049 2317898 R sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: protein modification [goid 0006464]; hybrid sensory kinase in two-component regulatory system with RcsB and YojN complement(2315049..2317898) Escherichia coli K12 948993 NP_416723.1 CDS atoS NC_000913.2 2318065 2319891 D sensor protein AtoS for response regulator AtoC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with AtoC 2318065..2319891 Escherichia coli K12 949011 NP_416724.1 CDS atoC NC_000913.2 2319888 2321273 D response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: transcription [goid 0006350]; fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein 2319888..2321273 Escherichia coli K12 947444 NP_416725.1 CDS atoD NC_000913.2 2321469 2322131 D acetyl-CoA:acetoacetyl-CoA transferase alpha subunit; GO_process: fatty acid oxidation [goid 0019395]; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit 2321469..2322131 Escherichia coli K12 947525 NP_416726.1 CDS atoA NC_000913.2 2322131 2322781 D acetyl-CoA:acetoacetyl-CoA transferase beta subunit; GO_process: fatty acid oxidation [goid 0019395]; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit 2322131..2322781 Escherichia coli K12 946719 NP_416727.1 CDS atoE NC_000913.2 2322778 2324100 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fatty acid oxidation [goid 0019395]; short chain fatty acid transporter 2322778..2324100 Escherichia coli K12 946721 NP_416728.1 CDS atoB NC_000913.2 2324131 2325315 D GO_process: fatty acid oxidation [goid 0019395]; acetyl-CoA acetyltransferase 2324131..2325315 Escherichia coli K12 946727 NP_416729.1 CDS yfaP NC_000913.2 2325389 2326165 R conserved protein complement(2325389..2326165) Escherichia coli K12 946728 NP_416730.1 CDS yfaQ NC_000913.2 2326170 2327819 R predicted protein complement(2326170..2327819) Escherichia coli K12 946730 b4500 CDS yfaS NC_000913.2 2327820 2332424 R hypothetical protein putative membrane protein; complement(2327820..2332424) Escherichia coli K12 1450231 NP_416732.4 CDS yfaT NC_000913.2 2332358 2332981 R predicted protein complement(2332358..2332981) Escherichia coli K12 946622 NP_416733.4 CDS yfaA NC_000913.2 2332978 2334666 R predicted protein complement(2332978..2334666) Escherichia coli K12 946618 NP_416734.1 CDS gyrA NC_000913.2 2334815 2337442 R DNA gyrase, subunit A, type II topoisomerase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA gyrase (type II topoisomerase), subunit A complement(2334815..2337442) Escherichia coli K12 946614 NP_416735.1 CDS ubiG NC_000913.2 2337589 2338311 D 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 2337589..2338311 Escherichia coli K12 946607 NP_416736.1 CDS yfaL NC_000913.2 2338439 2342191 R putative ATP-binding component of a transport system; adhesin complement(2338439..2342191) Escherichia coli K12 946595 YP_001165323.1 CDS ypaB NC_000913.2 2342616 2342759 R hypothetical protein complement(2342616..2342759) Escherichia coli K12 5061511 NP_416737.1 CDS nrdA NC_000913.2 2342887 2345172 D ribonucleoside diphosphate reductase 1, alpha subunit, B1; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside diphosphate reductase 1, alpha subunit 2342887..2345172 Escherichia coli K12 946612 NP_416738.1 CDS nrdB NC_000913.2 2345406 2346536 D ribonucleoside-diphosphate reductase 1, beta subunit, B2; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein 2345406..2346536 Escherichia coli K12 946732 NP_416739.1 CDS yfaE NC_000913.2 2346536 2346790 D predicted 2Fe-2S cluster-containing protein 2346536..2346790 Escherichia coli K12 946729 NP_416740.1 CDS inaA NC_000913.2 2346844 2347494 R pH-inducible protein involved in stress response; conserved protein complement(2346844..2347494) Escherichia coli K12 946731 b2238 CDS yfaH NC_000913.2 2347673 2347915 D pseudogene; 2347673..2347915 Escherichia coli K12 946718 NP_416742.1 CDS glpQ NC_000913.2 2347957 2349033 R glycerophosphodiester phosphodiesterase, periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: glycerol metabolic process [goid 0006071]; periplasmic glycerophosphodiester phosphodiesterase complement(2347957..2349033) Escherichia coli K12 946725 NP_416743.1 CDS glpT NC_000913.2 2349038 2350396 R sn-glycerol-3-phosphate permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate transporter complement(2349038..2350396) Escherichia coli K12 946704 NP_416744.1 CDS glpA NC_000913.2 2350669 2352297 D sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding 2350669..2352297 Escherichia coli K12 946713 NP_416745.1 CDS glpB NC_000913.2 2352287 2353546 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit 2352287..2353546 Escherichia coli K12 946733 NP_416746.1 CDS glpC NC_000913.2 2353543 2354733 D sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit 2353543..2354733 Escherichia coli K12 946735 NP_416747.1 CDS yfaD NC_000913.2 2354926 2355825 D conserved protein 2354926..2355825 Escherichia coli K12 946737 YP_001165324.1 CDS ypaA NC_000913.2 2355838 2356023 D predicted protein 2355838..2356023 Escherichia coli K12 1450280 NP_416748.1 CDS yfaU NC_000913.2 2356064 2356867 R predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase complement(2356064..2356867) Escherichia coli K12 948054 NP_416749.4 CDS yfaV NC_000913.2 2356885 2358174 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(2356885..2358174) Escherichia coli K12 945796 NP_416750.1 CDS yfaW NC_000913.2 2358231 2359448 R putative racemase; predicted enolase complement(2358231..2359448) Escherichia coli K12 945881 NP_416751.1 CDS yfaX NC_000913.2 2359451 2360233 R putative regulator; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(2359451..2360233) Escherichia coli K12 944752 NP_416752.1 CDS yfaY NC_000913.2 2360453 2361655 R conserved protein complement(2360453..2361655) Escherichia coli K12 945478 NP_416753.4 CDS yfaZ NC_000913.2 2361755 2362297 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane porin protein complement(2361755..2362297) Escherichia coli K12 946739 NP_416754.1 CDS nudI NC_000913.2 2362576 2363001 D predicted NUDIX hydrolase 2362576..2363001 Escherichia coli K12 946740 NP_416755.1 CDS ais NC_000913.2 2363040 2363642 R protein induced by aluminum; conserved protein complement(2363040..2363642) Escherichia coli K12 944945 NP_416756.5 CDS arnB NC_000913.2 2363950 2365089 D putative enzyme; uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent 2363950..2365089 Escherichia coli K12 947375 NP_416757.1 CDS arnC NC_000913.2 2365093 2366061 D putative sugar transferase; undecaprenyl phosphate-L-Ara4FN transferase 2365093..2366061 Escherichia coli K12 945275 NP_416758.1 CDS arnA NC_000913.2 2366061 2368043 D putative transformylase; fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase 2366061..2368043 Escherichia coli K12 947683 NP_416759.1 CDS yfbH NC_000913.2 2368040 2368930 D conserved protein 2368040..2368930 Escherichia coli K12 945334 NP_416760.1 CDS arnT NC_000913.2 2368930 2370582 D 4-amino-4-deoxy-L-arabinose transferase (lipid A modification); GO_process: response to stress [goid 0006950]; 4-amino-4-deoxy-L-arabinose transferase 2368930..2370582 Escherichia coli K12 947297 YP_588462.1 CDS yfbW NC_000913.2 2370579 2370914 D GO_component: integral to membrane [goid 0016021]; conserved protein 2370579..2370914 Escherichia coli K12 1450282 NP_416761.4 CDS yfbJ NC_000913.2 2370914 2371300 D putative transport/receptor protein; predicted inner membrane protein 2370914..2371300 Escherichia coli K12 945344 NP_416762.2 CDS pmrD NC_000913.2 2371294 2371560 R GO_process: response to drug [goid 0042493]; polymyxin resistance protein B complement(2371294..2371560) Escherichia coli K12 945130 NP_416763.1 CDS menE NC_000913.2 2371670 2373025 R GO_process: anaerobic respiration [goid 0009061]; o-succinylbenzoate-CoA ligase complement(2371670..2373025) Escherichia coli K12 946741 NP_416764.1 CDS menC NC_000913.2 2373022 2373984 R o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA; GO_process: anaerobic respiration [goid 0009061]; o-succinylbenzoyl-CoA synthase complement(2373022..2373984) Escherichia coli K12 946734 NP_416765.1 CDS menB NC_000913.2 2373984 2374841 R dihydroxynaphtoic acid synthetase; GO_process: anaerobic respiration [goid 0009061]; dihydroxynaphthoic acid synthetase complement(2373984..2374841) Escherichia coli K12 946747 NP_416766.1 CDS yfbB NC_000913.2 2374856 2375614 R putative enzyme; predicted peptidase complement(2374856..2375614) Escherichia coli K12 946736 NP_416767.1 CDS menD NC_000913.2 2375611 2377281 R 2-oxoglutarate decarboxylase; SHCHC synthase; GO_process: anaerobic respiration [goid 0009061]; bifunctional 2-oxoglutarate decarboxylase/ SHCHC synthase complement(2375611..2377281) Escherichia coli K12 946720 NP_416768.4 CDS menF NC_000913.2 2377370 2378665 R isochorismate hydroxymutase 2, menaquinone biosynthesis; GO_process: anaerobic respiration [goid 0009061]; isochorismate synthase 2 complement(2377370..2378665) Escherichia coli K12 946712 NP_416769.1 CDS elaB NC_000913.2 2378744 2379049 R conserved protein complement(2378744..2379049) Escherichia coli K12 946751 NP_416770.1 CDS elaA NC_000913.2 2379104 2379565 R predicted acyltransferase with acyl-CoA N-acyltransferase domain complement(2379104..2379565) Escherichia coli K12 946750 NP_416771.4 CDS rbn NC_000913.2 2379630 2380547 D binuclear zinc phosphodiesterase 2379630..2380547 Escherichia coli K12 946760 NP_416772.1 CDS elaD NC_000913.2 2380735 2381946 D putative sulfatase / phosphatase; predicted enzyme 2380735..2381946 Escherichia coli K12 946742 NP_416773.1 CDS yfbK NC_000913.2 2382017 2383744 R conserved protein complement(2382017..2383744) Escherichia coli K12 946743 NP_416774.2 CDS yfbL NC_000913.2 2383882 2384853 D putative aminopeptidase; predicted peptidase 2383882..2384853 Escherichia coli K12 945832 NP_416775.1 CDS yfbM NC_000913.2 2384956 2385459 D predicted protein 2384956..2385459 Escherichia coli K12 946745 NP_416776.1 CDS yfbN NC_000913.2 2385732 2386448 R predicted protein complement(2385732..2386448) Escherichia coli K12 946748 NP_416777.1 CDS yfbO NC_000913.2 2386603 2387079 D predicted protein 2386603..2387079 Escherichia coli K12 946752 NP_416778.1 CDS yfbP NC_000913.2 2387135 2387986 D predicted protein 2387135..2387986 Escherichia coli K12 946754 NP_416779.2 CDS nuoN NC_000913.2 2388070 2389527 R NADH dehydrogenase I chain N; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit N complement(2388070..2389527) Escherichia coli K12 945136 NP_416780.1 CDS nuoM NC_000913.2 2389534 2391063 R NADH dehydrogenase I chain M; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit M complement(2389534..2391063) Escherichia coli K12 947731 NP_416781.1 CDS nuoL NC_000913.2 2391227 2393068 R NADH dehydrogenase I chain L; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit L complement(2391227..2393068) Escherichia coli K12 945540 NP_416782.1 CDS nuoK NC_000913.2 2393065 2393367 R NADH dehydrogenase I chain K; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit K complement(2393065..2393367) Escherichia coli K12 947580 NP_416783.1 CDS nuoJ NC_000913.2 2393364 2393918 R NADH dehydrogenase I chain J; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit J complement(2393364..2393918) Escherichia coli K12 946756 NP_416784.1 CDS nuoI NC_000913.2 2393930 2394472 R NADH dehydrogenase I chain I; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain I complement(2393930..2394472) Escherichia coli K12 946757 NP_416785.1 CDS nuoH NC_000913.2 2394487 2395464 R NADH dehydrogenase I chain H; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit H complement(2394487..2395464) Escherichia coli K12 946761 NP_416786.4 CDS nuoG NC_000913.2 2395461 2398187 R NADH dehydrogenase I chain G; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain G complement(2395461..2398187) Escherichia coli K12 946762 NP_416787.1 CDS nuoF NC_000913.2 2398240 2399577 R NADH dehydrogenase I chain F; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain F complement(2398240..2399577) Escherichia coli K12 946753 NP_416788.1 CDS nuoE NC_000913.2 2399574 2400074 R NADH dehydrogenase I chain E; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain E complement(2399574..2400074) Escherichia coli K12 946746 NP_416789.2 CDS nuoC NC_000913.2 2400077 2401867 R NADH dehydrogenase I chain C, D; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain C,D complement(2400077..2401867) Escherichia coli K12 946759 NP_416790.1 CDS nuoB NC_000913.2 2401973 2402635 R NADH dehydrogenase I chain B; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain B complement(2401973..2402635) Escherichia coli K12 946738 NP_416791.3 CDS nuoA NC_000913.2 2402651 2403094 R NADH dehydrogenase I chain A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit A complement(2402651..2403094) Escherichia coli K12 946764 NP_416792.1 CDS lrhA NC_000913.2 2403725 2404663 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: aerobic respiration [goid 0009060]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes complement(2403725..2404663) Escherichia coli K12 946769 NP_416793.1 CDS yfbQ NC_000913.2 2405583 2406800 D putative aminotransferase; predicted aminotransferase 2405583..2406800 Escherichia coli K12 946772 NP_416794.1 CDS yfbR NC_000913.2 2406884 2407483 D putative alpha helix protein; deoxyribonucleoside 5'-monophosphatase 2406884..2407483 Escherichia coli K12 946771 NP_416795.1 CDS yfbS NC_000913.2 2407542 2409374 R putative transport protein; predicted transporter complement(2407542..2409374) Escherichia coli K12 946766 NP_416796.2 CDS yfbT NC_000913.2 2409461 2410111 R putative phosphatase; predicted hydrolase or phosphatase complement(2409461..2410111) Escherichia coli K12 946777 NP_416797.2 CDS yfbU NC_000913.2 2410122 2410616 R conserved protein complement(2410122..2410616) Escherichia coli K12 946767 NP_416798.1 CDS yfbV NC_000913.2 2410699 2411154 R conserved inner membrane protein complement(2410699..2411154) Escherichia coli K12 946774 NP_416799.1 CDS ackA NC_000913.2 2411492 2412694 D acetate kinase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: pyruvate catabolic process [goid 0042867]; GO_process: acetate catabolic process [goid 0045733]; acetate kinase A and propionate kinase 2 2411492..2412694 Escherichia coli K12 946775 NP_416800.1 CDS pta NC_000913.2 2412769 2414913 D phosphotransacetylase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: pyruvate catabolic process [goid 0042867]; GO_process: acetate catabolic process [goid 0045733]; phosphate acetyltransferase 2412769..2414913 Escherichia coli K12 946778 NP_416801.2 CDS yfcC NC_000913.2 2415103 2416623 D putative S-transferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 2415103..2416623 Escherichia coli K12 946780 NP_416802.1 CDS yfcD NC_000913.2 2416656 2417198 R putative regulator; predicted NUDIX hydrolase complement(2416656..2417198) Escherichia coli K12 946783 NP_416803.3 CDS yfcE NC_000913.2 2417256 2417810 R predicted phosphatase complement(2417256..2417810) Escherichia coli K12 946755 NP_416804.1 CDS yfcF NC_000913.2 2417863 2418507 R predicted enzyme complement(2417863..2418507) Escherichia coli K12 946749 NP_416805.1 CDS yfcG NC_000913.2 2418643 2419290 D putative S-transferase; predicted glutathione S-transferase 2418643..2419290 Escherichia coli K12 946763 NP_416806.1 CDS folX NC_000913.2 2419347 2419709 D D-erythro-7,8-dihydroneopterin tri P epimerase; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase 2419347..2419709 Escherichia coli K12 946781 NP_416807.1 CDS yfcH NC_000913.2 2419730 2420623 D putative sugar nucleotide epimerase; conserved protein with NAD(P)-binding Rossmann-fold domain 2419730..2420623 Escherichia coli K12 946784 NP_416808.1 CDS yfcI NC_000913.2 2420671 2421561 R conserved protein complement(2420671..2421561) Escherichia coli K12 946787 NP_416809.1 CDS hisP NC_000913.2 2421758 2422531 R ATP-binding component of histidine transport; GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: histidine biosynthetic process [goid 0000105]; GO_process: amino acid catabolic process [goid 0009063]; histidine/lysine/arginine/ornithine transporter subunit complement(2421758..2422531) Escherichia coli K12 946789 NP_416810.1 CDS hisM NC_000913.2 2422539 2423255 R histidine transport, membrane protein M; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; histidine/lysine/arginine/ornithine transporter subunit complement(2422539..2423255) Escherichia coli K12 946790 NP_416811.1 CDS hisQ NC_000913.2 2423252 2423938 R histidine transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; histidine/lysine/arginine/ornithine transporter subunit complement(2423252..2423938) Escherichia coli K12 947235 NP_416812.1 CDS hisJ NC_000913.2 2424028 2424810 R histidine-binding periplasmic protein of high-affinity histidine transport system; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: histidine biosynthetic process [goid 0000105]; histidine/lysine/arginine/ornithine transporter subunit complement(2424028..2424810) Escherichia coli K12 945309 NP_416813.1 CDS argT NC_000913.2 2425031 2425813 R lysine-, arginine-, ornithine-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_function: histidine/arginine/lysine/ornithine porter activity [goid 0015597]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; lysine/arginine/ornithine transporter subunit complement(2425031..2425813) Escherichia coli K12 949030 NP_416814.1 CDS ubiX NC_000913.2 2426079 2426648 R GO_process: aerobic respiration [goid 0009060]; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2426079..2426648) Escherichia coli K12 949033 NP_416815.1 CDS purF NC_000913.2 2426743 2428260 R amidophosphoribosyltransferase = PRPP amidotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; amidophosphoribosyltransferase complement(2426743..2428260) Escherichia coli K12 946794 NP_416816.1 CDS cvpA NC_000913.2 2428297 2428785 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane protein required for colicin V production complement(2428297..2428785) Escherichia coli K12 945055 NP_416817.2 CDS dedD NC_000913.2 2429044 2429706 R putative lipoprotein; conserved protein complement(2429044..2429706) Escherichia coli K12 944971 NP_416818.1 CDS folC NC_000913.2 2429696 2430964 R dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase; GO_process: folic acid biosynthetic process [goid 0046656]; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(2429696..2430964) Escherichia coli K12 945451 NP_416819.1 CDS accD NC_000913.2 2431034 2431948 R acetylCoA carboxylase, carboxytransferase component, beta subunit; GO_component: cytoplasm [goid 0005737]; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit complement(2431034..2431948) Escherichia coli K12 946796 NP_416820.1 CDS dedA NC_000913.2 2432104 2432763 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(2432104..2432763) Escherichia coli K12 946798 NP_416821.1 CDS truA NC_000913.2 2432846 2433658 R GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; pseudouridylate synthase I complement(2432846..2433658) Escherichia coli K12 946793 NP_416822.1 CDS usg NC_000913.2 2433658 2434671 R putative PTS system enzyme II A component; predicted semialdehyde dehydrogenase complement(2433658..2434671) Escherichia coli K12 946797 NP_416823.1 CDS pdxB NC_000913.2 2434737 2435873 R erythronate-4-phosphate dehyrogenase; GO_process: pyridoxine biosynthetic process [goid 0008615]; erythronate-4-phosphate dehydrogenase complement(2434737..2435873) Escherichia coli K12 946785 NP_416824.1 CDS flk NC_000913.2 2435972 2436967 D flagellar assembly protein; predicted flagella assembly protein 2435972..2436967 Escherichia coli K12 946776 NP_416825.1 CDS yfcJ NC_000913.2 2436964 2438142 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(2436964..2438142) Escherichia coli K12 946791 NP_416826.1 CDS fabB NC_000913.2 2438407 2439627 R GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] synthase I complement(2438407..2439627) Escherichia coli K12 946799 NP_416827.4 CDS mnmC NC_000913.2 2439786 2441792 D putative peptidase; fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme 2439786..2441792 Escherichia coli K12 946800 NP_416828.1 CDS yfcL NC_000913.2 2441913 2442191 R predicted protein complement(2441913..2442191) Escherichia coli K12 946804 NP_416829.1 CDS yfcM NC_000913.2 2442225 2442773 R putative transporting ATPase; conserved protein complement(2442225..2442773) Escherichia coli K12 946807 NP_416830.1 CDS yfcA NC_000913.2 2442773 2443582 R putative structural protein; conserved inner membrane protein complement(2442773..2443582) Escherichia coli K12 946808 NP_416831.1 CDS mepA NC_000913.2 2443582 2444406 R murein DD-endopeptidase, penicillin-insensitive; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; murein DD-endopeptidase complement(2443582..2444406) Escherichia coli K12 946812 NP_416832.1 CDS aroC NC_000913.2 2444410 2445495 R GO_process: chorismate biosynthetic process [goid 0009423]; chorismate synthase complement(2444410..2445495) Escherichia coli K12 946814 NP_416833.4 CDS prmB NC_000913.2 2445530 2446462 R putative adenine-specific methylase; N5-glutamine methyltransferase complement(2445530..2446462) Escherichia coli K12 946805 NP_416834.1 CDS yfcN NC_000913.2 2446628 2447179 D conserved protein 2446628..2447179 Escherichia coli K12 944847 NP_416835.2 CDS yfcO NC_000913.2 2447250 2448071 R predicted protein complement(2447250..2448071) Escherichia coli K12 946620 NP_416836.1 CDS yfcP NC_000913.2 2448073 2448612 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(2448073..2448612) Escherichia coli K12 946788 NP_416837.1 CDS yfcQ NC_000913.2 2448609 2449097 R GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(2448609..2449097) Escherichia coli K12 946779 NP_416838.1 CDS yfcR NC_000913.2 2449094 2449606 R putative fimbrial protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(2449094..2449606) Escherichia coli K12 946818 NP_416839.1 CDS yfcS NC_000913.2 2449606 2450358 R putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic pilus chaperone complement(2449606..2450358) Escherichia coli K12 946418 b4661 CDS yfcU NC_000913.2 2450378 2453023 R predicted export usher protein;putative membrane; Not classified putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; complement(2450378..2453023) Escherichia coli K12 1450268 NP_416841.1 CDS yfcV NC_000913.2 2453105 2453668 R putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein complement(2453105..2453668) Escherichia coli K12 949109 NP_416842.1 CDS sixA NC_000913.2 2454349 2454834 R GO_process: protein modification [goid 0006464]; phosphohistidine phosphatase complement(2454349..2454834) Escherichia coli K12 946815 NP_416843.1 CDS fadJ NC_000913.2 2455037 2457181 R putative enzyme; GO_process: fatty acid oxidation [goid 0019395]; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase complement(2455037..2457181) Escherichia coli K12 949097 NP_416844.1 CDS fadI NC_000913.2 2457181 2458491 R putative acyltransferase; beta-ketoacyl-CoA thiolase, anaerobic, subunit complement(2457181..2458491) Escherichia coli K12 948823 NP_416845.2 CDS yfcZ NC_000913.2 2458672 2458956 R conserved protein complement(2458672..2458956) Escherichia coli K12 948817 NP_416846.2 CDS fadL NC_000913.2 2459328 2460668 D long-chain fatty acid transport protein (outer membrane flp protein); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: fatty acid oxidation [goid 0019395]; long-chain fatty acid outer membrane transporter 2459328..2460668 Escherichia coli K12 946820 NP_416847.1 CDS yfdF NC_000913.2 2461034 2462092 D GO_process: DNA metabolic process [goid 0006259]; predicted protein 2461034..2462092 Escherichia coli K12 946819 NP_416848.1 CDS vacJ NC_000913.2 2462274 2463029 R lipoprotein precursor; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lipoprotein complement(2462274..2463029) Escherichia coli K12 945582 NP_416849.1 CDS yfdC NC_000913.2 2463323 2464255 D putative transport protein; predicted inner membrane protein 2463323..2464255 Escherichia coli K12 944801 NP_416850.1 CDS intS NC_000913.2 2464567 2465724 D CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase 2464567..2465724 Escherichia coli K12 946821 NP_416851.1 CDS yfdG NC_000913.2 2465877 2466239 D CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) 2465877..2466239 Escherichia coli K12 948821 NP_416852.1 CDS yfdH NC_000913.2 2466236 2467156 D CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase 2466236..2467156 Escherichia coli K12 949098 NP_416853.1 CDS yfdI NC_000913.2 2467153 2468484 D putative ligase; CPS-53 (KpLE1) prophage; predicted inner membrane protein 2467153..2468484 Escherichia coli K12 946822 b2353 CDS tfaS NC_000913.2 2468837 2469127 D pseudogene, CPS-53 (KpLE1) prophage; tail fiber assembly protein fragment; 2468837..2469127 Escherichia coli K12 946825 NP_416855.1 CDS yfdK NC_000913.2 2469099 2469539 R CPS-53 (KpLE1) prophage; conserved protein complement(2469099..2469539) Escherichia coli K12 948822 b2355 CDS yfdL NC_000913.2 2469566 2470144 R pseudogene, CPS-53 (KpLE1) prophage; complement(2469566..2470144) Escherichia coli K12 949099 b2356 CDS yfdM NC_000913.2 2470140 2470409 R CPS-53 (KpLE1) prophage; predicted methyltransferase; complement(2470140..2470409) Escherichia coli K12 945416 NP_416858.1 CDS yfdN NC_000913.2 2470409 2470903 R CPS-53 (KpLE1) prophage; predicted protein complement(2470409..2470903) Escherichia coli K12 946419 b2358 CDS yfdO NC_000913.2 2470900 2471346 R pseudogene, CPS-53 (KpLE1) prophage; predicted defective phage replication protein O; complement(2470900..2471346) Escherichia coli K12 947403 NP_416860.4 CDS yfdP NC_000913.2 2471626 2471988 D CPS-53 (KpLE1) prophage; predicted protein 2471626..2471988 Escherichia coli K12 945565 NP_416861.1 CDS yfdQ NC_000913.2 2472054 2472878 D CPS-53 (KpLE1) prophage; predicted protein 2472054..2472878 Escherichia coli K12 946827 NP_416862.2 CDS yfdR NC_000913.2 2473006 2473542 D CPS-53 (KpLE1) prophage; conserved protein 2473006..2473542 Escherichia coli K12 946834 NP_416863.1 CDS yfdS NC_000913.2 2473533 2473895 D CPS-53 (KpLE1) prophage; predicted protein 2473533..2473895 Escherichia coli K12 946426 NP_416864.1 CDS yfdT NC_000913.2 2473895 2474200 D CPS-53 (KpLE1) prophage; predicted protein 2473895..2474200 Escherichia coli K12 946836 b4545 CDS ypdJ NC_000913.2 2474116 2474256 D predicted protein; 2474116..2474256 Escherichia coli K12 1450283 YP_588463.1 CDS torI NC_000913.2 2474332 2474532 D response regulator inhibitor for tor operon 2474332..2474532 Escherichia coli K12 1450232 NP_416865.1 CDS dsdC NC_000913.2 2474716 2475651 R D-serine dehydratase (deaminase) transcriptional activator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(2474716..2475651) Escherichia coli K12 948828 NP_416866.1 CDS dsdX NC_000913.2 2475869 2477206 D transport system permease (serine?); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2475869..2477206 Escherichia coli K12 949103 NP_416867.1 CDS dsdA NC_000913.2 2477224 2478552 D D-serine dehydratase (deaminase); GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; D-serine ammonia-lyase 2477224..2478552 Escherichia coli K12 946837 NP_416868.1 CDS emrY NC_000913.2 2478660 2480198 R multidrug resistance protein Y; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted multidrug efflux system complement(2478660..2480198) Escherichia coli K12 946835 NP_416869.1 CDS emrK NC_000913.2 2480198 2481361 R multidrug resistance protein K; GO_process: response to drug [goid 0042493]; EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component complement(2480198..2481361) Escherichia coli K12 946840 NP_416870.1 CDS evgA NC_000913.2 2481777 2482391 D putative positive transcription regulator (sensor EvgS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with EvgS 2481777..2482391 Escherichia coli K12 946841 NP_416871.1 CDS evgS NC_000913.2 2482396 2485989 D putative sensor for regulator EvgA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase in two-component regulatory system with EvgA 2482396..2485989 Escherichia coli K12 946844 NP_416872.4 CDS yfdE NC_000913.2 2486045 2487190 R putative enzyme; predicted CoA-transferase, NAD(P)-binding complement(2486045..2487190) Escherichia coli K12 946432 NP_416873.1 CDS yfdV NC_000913.2 2487264 2488208 R putative receptor protein; predicted transporter complement(2487264..2488208) Escherichia coli K12 949110 NP_416874.1 CDS oxc NC_000913.2 2488278 2489972 R predicted oxalyl-CoA decarboxylase complement(2488278..2489972) Escherichia coli K12 946845 NP_416875.1 CDS frc NC_000913.2 2490026 2491276 R putative enzyme; formyl-CoA transferase, NAD(P)-binding complement(2490026..2491276) Escherichia coli K12 946842 NP_416876.1 CDS yfdX NC_000913.2 2491789 2492424 R predicted protein complement(2491789..2492424) Escherichia coli K12 949108 NP_416877.1 CDS ypdI NC_000913.2 2492720 2492995 D predicted lipoprotein involved in colanic acid biosynthesis 2492720..2492995 Escherichia coli K12 949107 NP_416878.1 CDS yfdY NC_000913.2 2493072 2493314 R predicted inner membrane protein complement(2493072..2493314) Escherichia coli K12 948842 NP_416879.4 CDS lpxP NC_000913.2 2493667 2494587 D putative heat shock protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: response to temperature stimulus [goid 0009266]; palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase 2493667..2494587 Escherichia coli K12 946847 NP_416880.1 CDS yfdZ NC_000913.2 2495079 2496317 R putative aminotransferase; prediected aminotransferase, PLP-dependent complement(2495079..2496317) Escherichia coli K12 946850 NP_416881.1 CDS ypdA NC_000913.2 2496693 2498390 D putative sensor protein; predicted sensory kinase in two-component system with YpdB 2496693..2498390 Escherichia coli K12 946723 NP_416882.1 CDS ypdB NC_000913.2 2498405 2499139 D putative 2-component transcriptional regulator; GO_process: transcription [goid 0006350]; predicted response regulator in two-component system withYpdA 2498405..2499139 Escherichia coli K12 947395 NP_416883.1 CDS ypdC NC_000913.2 2499152 2500009 D putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding protein 2499152..2500009 Escherichia coli K12 946856 NP_416884.1 CDS fryA NC_000913.2 2500012 2502507 R putative PTS system enzyme IIA component, enzyme I; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component complement(2500012..2502507) Escherichia coli K12 946852 NP_416885.1 CDS ypdE NC_000913.2 2502532 2503569 R predicted peptidase complement(2502532..2503569) Escherichia coli K12 946848 NP_416886.1 CDS ypdF NC_000913.2 2503569 2504654 R putative peptidase; predicted peptidase complement(2503569..2504654) Escherichia coli K12 946853 NP_416887.1 CDS fryC NC_000913.2 2504669 2505916 R GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIC component of PTS complement(2504669..2505916) Escherichia coli K12 949111 NP_416888.1 CDS fryB NC_000913.2 2505938 2506264 R putative PTS system enzyme IIB component; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; predicted enzyme IIB component of PTS complement(2505938..2506264) Escherichia coli K12 949087 NP_416889.1 CDS glk NC_000913.2 2506483 2507448 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; glucokinase complement(2506483..2507448) Escherichia coli K12 946858 NP_416890.1 CDS yfeO NC_000913.2 2507652 2508908 D predicted ion channel protein 2507652..2508908 Escherichia coli K12 946854 NP_416891.1 CDS ypeC NC_000913.2 2509023 2509349 D the overlapping reading frame (b2391) is no longer thought to be an actual gene, and has been deaccessioned; conserved protein 2509023..2509349 Escherichia coli K12 946855 NP_416893.1 CDS mntH NC_000913.2 2509490 2510728 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: xenobiotic metabolic process [goid 0006805]; manganese/divalent cation transporter complement(2509490..2510728) Escherichia coli K12 946899 NP_416894.1 CDS nupC NC_000913.2 2511064 2512266 D permease of transport system for 3 nucleosides; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; nucleoside (except guanosine) transporter 2511064..2512266 Escherichia coli K12 946895 NP_416895.2 CDS insL NC_000913.2 2512353 2513465 D IS186/IS421 transposase 2512353..2513465 Escherichia coli K12 946896 NP_416896.4 CDS yfeA NC_000913.2 2513665 2515854 R predicted diguanylate cyclase complement(2513665..2515854) Escherichia coli K12 946864 NP_416897.2 CDS yfeC NC_000913.2 2516489 2516833 D predicted DNA-binding transcriptional regulator 2516489..2516833 Escherichia coli K12 946857 NP_416898.2 CDS yfeD NC_000913.2 2516856 2517227 D predicted DNA-binding transcriptional regulator 2516856..2517227 Escherichia coli K12 946865 NP_416899.1 CDS gltX NC_000913.2 2517279 2518694 R glutamate tRNA synthetase, catalytic subunit; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glutamyl-tRNA synthetase complement(2517279..2518694) Escherichia coli K12 946906 NP_416900.1 CDS xapR NC_000913.2 2519615 2520499 R regulator for xapA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(2519615..2520499) Escherichia coli K12 946862 NP_416901.1 CDS xapB NC_000913.2 2520751 2522007 R xanthosine permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; xanthosine transporter complement(2520751..2522007) Escherichia coli K12 946868 NP_416902.1 CDS xapA NC_000913.2 2522067 2522900 R xanthosine phosphorylase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; purine nucleoside phosphorylase II complement(2522067..2522900) Escherichia coli K12 946878 NP_416903.1 CDS yfeN NC_000913.2 2523149 2523913 D putative sugar hydrolase; conserved outer membrane protein 2523149..2523913 Escherichia coli K12 946872 NP_416904.1 CDS yfeR NC_000913.2 2523952 2524878 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2523952..2524878) Escherichia coli K12 946873 NP_416905.1 CDS yfeH NC_000913.2 2524968 2525966 D putative cytochrome oxidase; predicted inner membrane protein 2524968..2525966 Escherichia coli K12 946874 YP_588464.1 CDS ypeB NC_000913.2 2525963 2526181 R GO_component: cytoplasm [goid 0005737]; predicted protein complement(2525963..2526181) Escherichia coli K12 1450285 NP_416906.1 CDS ligA NC_000913.2 2526183 2528198 R DNA ligase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; DNA ligase, NAD(+)-dependent complement(2526183..2528198) Escherichia coli K12 946885 NP_416907.1 CDS zipA NC_000913.2 2528269 2529255 R cell division protein involved in FtsZ ring; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cell division protein involved in Z ring assembly complement(2528269..2529255) Escherichia coli K12 946869 NP_416908.1 CDS cysZ NC_000913.2 2529485 2530246 D required for sulfate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; predicted inner membrane protein 2529485..2530246 Escherichia coli K12 946875 NP_416909.1 CDS cysK NC_000913.2 2530431 2531402 D cysteine synthase A, O-acetylserine sulfhydrolase A; GO_component: cytoplasm [goid 0005737]; GO_process: cysteine biosynthetic process [goid 0019344]; cysteine synthase A, O-acetylserine sulfhydrolase A subunit 2530431..2531402 Escherichia coli K12 946877 NP_416910.1 CDS ptsH NC_000913.2 2531786 2532043 D PTS system protein HPr; GO_process: carbohydrate catabolic process [goid 0016052]; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) 2531786..2532043 Escherichia coli K12 946886 NP_416911.1 CDS ptsI NC_000913.2 2532088 2533815 D PEP-protein phosphotransferase system enzyme I; GO_process: carbohydrate catabolic process [goid 0016052]; PEP-protein phosphotransferase of PTS system (enzyme I) 2532088..2533815 Escherichia coli K12 946879 NP_416912.1 CDS crr NC_000913.2 2533856 2534365 D PTS system, glucose-specific IIA component; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; glucose-specific enzyme IIA component of PTS 2533856..2534365 Escherichia coli K12 946880 NP_416913.1 CDS pdxK NC_000913.2 2534408 2535259 R pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase complement(2534408..2535259) Escherichia coli K12 946881 NP_416914.1 CDS yfeK NC_000913.2 2535364 2535738 D predicted protein 2535364..2535738 Escherichia coli K12 946876 NP_416915.1 CDS yfeS NC_000913.2 2535771 2536505 D conserved protein 2535771..2536505 Escherichia coli K12 946887 NP_416916.1 CDS cysM NC_000913.2 2536694 2537605 R cysteine synthase B, O-acetylserine sulfhydrolase B; GO_process: cysteine biosynthetic process [goid 0019344]; cysteine synthase B (O-acetylserine sulfhydrolase B) complement(2536694..2537605) Escherichia coli K12 946888 NP_416917.1 CDS cysA NC_000913.2 2537739 2538836 R ATP-binding component of sulfate permease A protein; chromate resistance; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_function: sulfate-transporting ATPase activity [goid 0015419]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: response to drug [goid 0042493]; sulfate/thiosulfate transporter subunit complement(2537739..2538836) Escherichia coli K12 946889 YP_026168.2 CDS cysW NC_000913.2 2538826 2539701 R sulfate transport system permease W protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; sulfate/thiosulfate transporter subunit complement(2538826..2539701) Escherichia coli K12 2847743 NP_416919.1 CDS cysU NC_000913.2 2539701 2540534 R sulfate, thiosulfate transport system permease T protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; sulfate/thiosulfate transporter subunit complement(2539701..2540534) Escherichia coli K12 946882 NP_416920.1 CDS cysP NC_000913.2 2540534 2541550 R thiosulfate binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: sulfur metabolic process [goid 0006790]; thiosulfate transporter subunit complement(2540534..2541550) Escherichia coli K12 946883 NP_416921.4 CDS ucpA NC_000913.2 2541854 2542645 R putative oxidoreductase; predicted oxidoredutase, sulfate metabolism protein complement(2541854..2542645) Escherichia coli K12 946898 NP_416922.1 CDS yfeT NC_000913.2 2542774 2543631 R predicted DNA-binding transcriptional regulator complement(2542774..2543631) Escherichia coli K12 946568 NP_416923.1 CDS murQ NC_000913.2 2543795 2544691 D putative regulator; predicted PTS component 2543795..2544691 Escherichia coli K12 946893 NP_416924.1 CDS murP NC_000913.2 2544695 2546119 D GO_process: carbohydrate catabolic process [goid 0016052]; fused predicted PTS enzymes: IIB component/IIC component 2544695..2546119 Escherichia coli K12 946894 NP_416925.2 CDS yfeW NC_000913.2 2546124 2547428 D putative beta-lactamase; GO_process: carbohydrate catabolic process [goid 0016052]; predicted periplasmic esterase 2546124..2547428 Escherichia coli K12 946907 NP_416926.4 CDS yfeX NC_000913.2 2547668 2548567 R conserved protein complement(2547668..2548567) Escherichia coli K12 946913 NP_416927.1 CDS yfeY NC_000913.2 2548663 2549238 R predicted protein complement(2548663..2549238) Escherichia coli K12 946919 NP_416928.4 CDS yfeZ NC_000913.2 2549299 2549748 R predicted inner membrane protein complement(2549299..2549748) Escherichia coli K12 946918 NP_416929.4 CDS ypeA NC_000913.2 2549735 2550160 R predicted acyltransferase with acyl-CoA N-acyltransferase domain complement(2549735..2550160) Escherichia coli K12 946917 NP_416930.1 CDS amiA NC_000913.2 2550374 2551243 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylmuramoyl-l-alanine amidase I 2550374..2551243 Escherichia coli K12 946916 NP_416931.1 CDS hemF NC_000913.2 2551247 2552146 D GO_component: cytoplasm [goid 0005737]; coproporphyrinogen III oxidase 2551247..2552146 Escherichia coli K12 946908 NP_416932.1 CDS eutR NC_000913.2 2552152 2553204 R putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amine catabolic process [goid 0009310]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2552152..2553204) Escherichia coli K12 946911 NP_416933.4 CDS eutK NC_000913.2 2553250 2553750 R GO_process: amine catabolic process [goid 0009310]; predicted carboxysome structural protein with predicted role in ethanolamine utilization complement(2553250..2553750) Escherichia coli K12 946912 NP_416934.1 CDS eutL NC_000913.2 2553763 2554422 R GO_process: amine catabolic process [goid 0009310]; predicted carboxysome structural protein with predicted role in ethanolamine utilization complement(2553763..2554422) Escherichia coli K12 946914 NP_416935.1 CDS eutC NC_000913.2 2554432 2555319 R ethanolamine ammonia-lyase, light chain; GO_process: amine catabolic process [goid 0009310]; ethanolamine ammonia-lyase, small subunit (light chain) complement(2554432..2555319) Escherichia coli K12 946925 NP_416936.4 CDS eutB NC_000913.2 2555340 2556701 R ethanolamine ammonia-lyase, heavy chain; GO_process: amine catabolic process [goid 0009310]; ethanolamine ammonia-lyase, large subunit, heavy chain complement(2555340..2556701) Escherichia coli K12 946924 NP_416937.2 CDS intZ NC_000913.2 2556880 2558088 D putative prophage integrase; CPZ-55 prophage; predicted integrase 2556880..2558088 Escherichia coli K12 946923 NP_416938.1 CDS yffL NC_000913.2 2558279 2558920 D CPZ-55 prophage; predicted protein 2558279..2558920 Escherichia coli K12 946922 NP_416939.1 CDS yffM NC_000913.2 2559390 2559635 D CPZ-55 prophage; predicted protein 2559390..2559635 Escherichia coli K12 946921 NP_416940.2 CDS yffN NC_000913.2 2559647 2560015 D CPZ-55 prophage; predicted protein 2559647..2560015 Escherichia coli K12 946930 NP_416941.1 CDS yffO NC_000913.2 2560133 2560549 D CPZ-55 prophage; predicted protein 2560133..2560549 Escherichia coli K12 946929 NP_416942.1 CDS yffP NC_000913.2 2560546 2561139 D CPZ-55 prophage; predicted protein 2560546..2561139 Escherichia coli K12 946928 NP_416943.2 CDS yffQ NC_000913.2 2561614 2561991 D CPZ-55 prophage; predicted protein 2561614..2561991 Escherichia coli K12 946927 NP_416944.1 CDS yffR NC_000913.2 2562002 2562394 D CPZ-55 prophage; predicted protein 2562002..2562394 Escherichia coli K12 946931 NP_416945.2 CDS yffS NC_000913.2 2562545 2563354 D CPZ-55 prophage; predicted protein 2562545..2563354 Escherichia coli K12 946932 NP_416946.1 CDS eutA NC_000913.2 2563503 2564906 R reactivating factor for ethanolamine ammonia lyase complement(2563503..2564906) Escherichia coli K12 946937 NP_416947.1 CDS eutH NC_000913.2 2564903 2566129 R ethanolamine utilization; homolog of Salmonella putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amine catabolic process [goid 0009310]; predicted inner membrane protein complement(2564903..2566129) Escherichia coli K12 944979 NP_416948.4 CDS eutG NC_000913.2 2566346 2567533 R ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: amine catabolic process [goid 0009310]; predicted alcohol dehydrogenase in ethanolamine utilization complement(2566346..2567533) Escherichia coli K12 946233 NP_416949.1 CDS eutJ NC_000913.2 2567523 2568359 R ethanolamine utilization; homolog of Salmonella gene; GO_process: amine catabolic process [goid 0009310]; GO_process: protein folding [goid 0006457]; predicted chaperonin, ethanolamine utilization protein complement(2567523..2568359) Escherichia coli K12 947588 NP_416950.1 CDS eutE NC_000913.2 2568370 2569773 R ethanolamine utilization; similar to acetaldehyde dehydrogenase; GO_process: amine catabolic process [goid 0009310]; predicted aldehyde dehydrogenase, ethanolamine utilization protein complement(2568370..2569773) Escherichia coli K12 946943 NP_416951.1 CDS eutN NC_000913.2 2569785 2570072 R detox protein; GO_process: xenobiotic metabolic process [goid 0006805]; predicted carboxysome structural protein, ethanolamine utilization protein complement(2569785..2570072) Escherichia coli K12 946945 NP_416952.2 CDS eutM NC_000913.2 2570179 2570472 R detox protein; GO_process: xenobiotic metabolic process [goid 0006805]; predicted carboxysome structural protein, ethanolamine utilization protein complement(2570179..2570472) Escherichia coli K12 946942 NP_416953.1 CDS eutD NC_000913.2 2570511 2571527 R ethanolamine utilization; homolog of Salmonella acetyl/butyryl P transferase; GO_process: amine catabolic process [goid 0009310]; predicted phosphotransacetylase subunit complement(2570511..2571527) Escherichia coli K12 946940 NP_416954.1 CDS eutT NC_000913.2 2571524 2572327 R GO_process: amine catabolic process [goid 0009310]; predicted cobalamin adenosyltransferase in ethanolamine utilization complement(2571524..2572327) Escherichia coli K12 946939 NP_416955.1 CDS eutQ NC_000913.2 2572324 2573025 R GO_process: amine catabolic process [goid 0009310]; conserved protein complement(2572324..2573025) Escherichia coli K12 946935 NP_416956.1 CDS eutP NC_000913.2 2573000 2573479 R GO_process: amine catabolic process [goid 0009310]; conserved protein with nucleoside triphosphate hydrolase domain complement(2573000..2573479) Escherichia coli K12 946933 NP_416957.4 CDS eutS NC_000913.2 2573492 2573827 R GO_process: amine catabolic process [goid 0009310]; predicted carboxysome structural protein with predicted role in ethanol utilization complement(2573492..2573827) Escherichia coli K12 946936 NP_416958.1 CDS maeB NC_000913.2 2574120 2576399 R putative multimodular enzyme; fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase complement(2574120..2576399) Escherichia coli K12 946947 NP_416959.1 CDS talA NC_000913.2 2576688 2577638 D GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; transaldolase A 2576688..2577638 Escherichia coli K12 947006 NP_416960.1 CDS tktB NC_000913.2 2577658 2579661 D transketolase 2 isozyme; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; transketolase 2, thiamin-binding 2577658..2579661 Escherichia coli K12 945865 NP_416961.1 CDS ypfG NC_000913.2 2579756 2580799 R predicted protein complement(2579756..2580799) Escherichia coli K12 946828 NP_416962.1 CDS nudK NC_000913.2 2580925 2581500 R predicted NUDIX hydrolase complement(2580925..2581500) Escherichia coli K12 947072 NP_416963.1 CDS aegA NC_000913.2 2581568 2583547 R fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit complement(2581568..2583547) Escherichia coli K12 947383 NP_416964.1 CDS narQ NC_000913.2 2583753 2585453 D sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with NarP (NarL) 2583753..2585453 Escherichia coli K12 946948 NP_416965.1 CDS acrD NC_000913.2 2585617 2588730 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; aminoglycoside/multidrug efflux system 2585617..2588730 Escherichia coli K12 945464 YP_001165325.1 CDS ypfM NC_000913.2 2588829 2588888 R hypothetical protein complement(2588829..2588888) Escherichia coli K12 5061513 NP_416966.1 CDS yffB NC_000913.2 2589269 2589625 D conserved protein 2589269..2589625 Escherichia coli K12 946953 NP_416967.1 CDS dapE NC_000913.2 2589629 2590756 D GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; N-succinyl-diaminopimelate deacylase 2589629..2590756 Escherichia coli K12 948313 YP_588465.1 CDS ypfN NC_000913.2 2590784 2590984 D GO_component: anchored to membrane [goid 0031225]; predicted protein 2590784..2590984 Escherichia coli K12 1450286 NP_416968.2 CDS ypfH NC_000913.2 2591094 2591792 R predicted hydrolase complement(2591094..2591792) Escherichia coli K12 947571 NP_416969.1 CDS ypfI NC_000913.2 2591866 2593881 R predicted hydrolase complement(2591866..2593881) Escherichia coli K12 946053 NP_416970.1 CDS ypfJ NC_000913.2 2593896 2594759 R conserved protein complement(2593896..2594759) Escherichia coli K12 946956 NP_416971.1 CDS purC NC_000913.2 2594927 2595640 R phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylaminoimidazole-succinocarboxamide synthetase complement(2594927..2595640) Escherichia coli K12 946957 NP_416972.4 CDS nlpB NC_000913.2 2595853 2596887 R lipoprotein-34; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; lipoprotein complement(2595853..2596887) Escherichia coli K12 946954 NP_416973.1 CDS dapA NC_000913.2 2596904 2597782 R GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; dihydrodipicolinate synthase complement(2596904..2597782) Escherichia coli K12 946952 NP_416974.4 CDS gcvR NC_000913.2 2597928 2598500 D transcriptional regulation of gcv operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA 2597928..2598500 Escherichia coli K12 946950 NP_416975.1 CDS bcp NC_000913.2 2598500 2598970 D bacterioferritin comigratory protein; GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; thiol peroxidase, thioredoxin-dependent 2598500..2598970 Escherichia coli K12 946949 NP_416976.4 CDS hyfA NC_000913.2 2599223 2599840 D hydrogenase 4 Fe-S subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, 4Fe-4S subunit 2599223..2599840 Escherichia coli K12 946959 NP_416977.1 CDS hyfB NC_000913.2 2599840 2601858 D hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2599840..2601858 Escherichia coli K12 946961 NP_416978.4 CDS hyfC NC_000913.2 2601869 2602816 D hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2601869..2602816 Escherichia coli K12 947492 NP_416979.1 CDS hyfD NC_000913.2 2602833 2604272 D hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2602833..2604272 Escherichia coli K12 947290 NP_416980.1 CDS hyfE NC_000913.2 2604284 2604934 D hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2604284..2604934 Escherichia coli K12 945298 NP_416981.1 CDS hyfF NC_000913.2 2604939 2606519 D hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2604939..2606519 Escherichia coli K12 946962 NP_416982.1 CDS hyfG NC_000913.2 2606509 2608176 D hydrogenase 4 subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, subunit 2606509..2608176 Escherichia coli K12 946964 NP_416983.1 CDS hyfH NC_000913.2 2608186 2608731 D hydrogenase 4 Fe-S subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, Fe-S subunit 2608186..2608731 Escherichia coli K12 946965 NP_416984.1 CDS hyfI NC_000913.2 2608728 2609486 D hydrogenase 4 Fe-S subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, Fe-S subunit 2608728..2609486 Escherichia coli K12 946966 NP_416985.4 CDS hyfJ NC_000913.2 2609479 2609892 D GO_process: translation [goid 0006412]; predicted processing element hydrogenase 4 2609479..2609892 Escherichia coli K12 947713 NP_416986.4 CDS hyfR NC_000913.2 2609922 2611934 D putative 2-component regulator, interaction with sigma 54; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, formate sensing 2609922..2611934 Escherichia coli K12 948886 NP_416987.1 CDS focB NC_000913.2 2611956 2612804 D probable formate transporter (formate channel 2); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted formate transporter 2611956..2612804 Escherichia coli K12 949032 NP_416988.1 CDS yfgO NC_000913.2 2612842 2613903 R putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein complement(2612842..2613903) Escherichia coli K12 945894 NP_416989.1 CDS yfgC NC_000913.2 2614116 2615579 D predicted peptidase 2614116..2615579 Escherichia coli K12 947029 NP_416990.1 CDS yfgD NC_000913.2 2615600 2615959 D putative oxidoreductase; GO_process: xenobiotic metabolic process [goid 0006805]; predicted oxidoreductase 2615600..2615959 Escherichia coli K12 946974 NP_416991.1 CDS hda NC_000913.2 2616097 2616843 R putative DNA replication factor; GO_process: DNA-dependent DNA replication [goid 0006261]; ATPase regulatory factor involved in DnaA inactivation complement(2616097..2616843) Escherichia coli K12 946977 NP_416992.1 CDS uraA NC_000913.2 2616893 2618182 R uracil transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uracil transporter complement(2616893..2618182) Escherichia coli K12 946978 NP_416993.2 CDS upp NC_000913.2 2618268 2618894 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uracil phosphoribosyltransferase complement(2618268..2618894) Escherichia coli K12 946979 NP_416994.1 CDS purM NC_000913.2 2619219 2620256 D phosphoribosylaminoimidazole synthetase = AIR synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylaminoimidazole synthetase 2619219..2620256 Escherichia coli K12 946975 NP_416995.1 CDS purN NC_000913.2 2620256 2620894 D GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylglycinamide formyltransferase 1 2620256..2620894 Escherichia coli K12 946973 NP_416996.1 CDS ppk NC_000913.2 2621066 2623132 D polyphosphate kinase; GO_process: phosphorus metabolic process [goid 0006793]; polyphosphate kinase, component of RNA degradosome 2621066..2623132 Escherichia coli K12 946971 NP_416997.1 CDS ppx NC_000913.2 2623137 2624678 D GO_process: phosphorus metabolic process [goid 0006793]; exopolyphosphatase 2623137..2624678 Escherichia coli K12 946970 NP_416998.1 CDS yfgF NC_000913.2 2624717 2626960 R putative cytochrome C-type biogenesis protein; predicted inner membrane protein complement(2624717..2626960) Escherichia coli K12 946968 NP_416999.1 CDS yfgG NC_000913.2 2627312 2627503 D predicted protein 2627312..2627503 Escherichia coli K12 946980 NP_417000.1 CDS yfgH NC_000913.2 2627814 2628332 D putative outer membrane lipoprotein; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane lipoprotein 2627814..2628332 Escherichia coli K12 945709 NP_417001.1 CDS yfgI NC_000913.2 2628348 2628887 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; conserved protein 2628348..2628887 Escherichia coli K12 945168 NP_417002.1 CDS guaA NC_000913.2 2628980 2630557 R GMP synthetase (glutamine-hydrolyzing); GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GMP synthetase (glutamine aminotransferase) complement(2628980..2630557) Escherichia coli K12 947334 NP_417003.1 CDS guaB NC_000913.2 2630626 2632092 R GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; IMP dehydrogenase complement(2630626..2632092) Escherichia coli K12 946985 NP_417004.1 CDS xseA NC_000913.2 2632254 2633624 D GO_process: DNA catabolic process [goid 0006308]; exonuclease VII, large subunit 2632254..2633624 Escherichia coli K12 946988 NP_417005.2 CDS yfgJ NC_000913.2 2633621 2633836 R GO_process: biotin carboxyl carrier protein biosynthetic process [goid 0042966]; predicted protein complement(2633621..2633836) Escherichia coli K12 946984 NP_417006.2 CDS der NC_000913.2 2633906 2635378 R putative GTP-binding factor; predicted GTP-binding protein complement(2633906..2635378) Escherichia coli K12 946983 NP_417007.1 CDS yfgL NC_000913.2 2635496 2636674 R putative dehydrogenase; GO_process: protein modification [goid 0006464]; protein assembly complex, lipoprotein component complement(2635496..2636674) Escherichia coli K12 946982 NP_417008.1 CDS yfgM NC_000913.2 2636685 2637305 R conserved protein complement(2636685..2637305) Escherichia coli K12 946981 NP_417009.1 CDS hisS NC_000913.2 2637323 2638597 R histidine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; histidyl tRNA synthetase complement(2637323..2638597) Escherichia coli K12 946989 NP_417010.1 CDS ispG NC_000913.2 2638708 2639826 R 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase complement(2638708..2639826) Escherichia coli K12 946991 NP_417011.1 CDS yfgA NC_000913.2 2639853 2640866 R putative membrane protein; conserved protein complement(2639853..2640866) Escherichia coli K12 946992 NP_417012.1 CDS yfgB NC_000913.2 2641151 2642305 R predicted enzyme complement(2641151..2642305) Escherichia coli K12 946249 NP_417013.1 CDS ndk NC_000913.2 2642455 2642886 R nucleoside diphosphate kinase; GO_component: periplasmic space [goid 0042597]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase complement(2642455..2642886) Escherichia coli K12 945611 NP_417014.1 CDS pbpC NC_000913.2 2643035 2645347 R penicillin binding protein 1C (PBP 1C); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; fused transglycosylase/transpeptidase complement(2643035..2645347) Escherichia coli K12 947152 NP_417015.1 CDS yfhM NC_000913.2 2645348 2650309 R conserved protein complement(2645348..2650309) Escherichia coli K12 947302 NP_417016.4 CDS sseA NC_000913.2 2650516 2651361 D putative thiosulfate sulfurtransferase; GO_process: sulfur metabolic process [goid 0006790]; 3-mercaptopyruvate sulfurtransferase 2650516..2651361 Escherichia coli K12 946993 NP_417017.4 CDS sseB NC_000913.2 2652179 2652955 R enhanced serine sensitivity; GO_process: sulfur metabolic process [goid 0006790]; rhodanase-like enzyme, sulfur transfer from thiosulfate complement(2652179..2652955) Escherichia coli K12 946994 NP_417018.4 CDS pepB NC_000913.2 2653097 2654380 R putative peptidase; aminopeptidase B complement(2653097..2654380) Escherichia coli K12 948766 NP_417019.1 CDS iscX NC_000913.2 2654558 2654758 R GO_process: protein folding [goid 0006457]; conserved protein complement(2654558..2654758) Escherichia coli K12 945196 NP_417020.1 CDS fdx NC_000913.2 2654770 2655105 R [2FE-2S] ferredoxin, electron carrer protein; GO_function: electron carrier activity [goid 0009055]; [2Fe-2S] ferredoxin complement(2654770..2655105) Escherichia coli K12 947160 NP_417021.1 CDS hscA NC_000913.2 2655107 2656957 R DnaK-homologue chaperone Hsc66; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; DnaK-like molecular chaperone specific for IscU complement(2655107..2656957) Escherichia coli K12 944885 NP_417022.1 CDS hscB NC_000913.2 2656974 2657489 R GO_process: protein folding [goid 0006457]; DnaJ-like molecular chaperone specific for IscU complement(2656974..2657489) Escherichia coli K12 946995 NP_417023.1 CDS iscA NC_000913.2 2657585 2657908 R GO_process: protein folding [goid 0006457]; FeS cluster assembly protein complement(2657585..2657908) Escherichia coli K12 946999 NP_417024.1 CDS iscU NC_000913.2 2657925 2658311 R GO_process: translation [goid 0006412]; scaffold protein complement(2657925..2658311) Escherichia coli K12 947002 YP_026169.1 CDS iscS NC_000913.2 2658339 2659553 R cysteine desulfurase cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent; GO_process: RNA modification [goid 0009451]; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent complement(2658339..2659553) Escherichia coli K12 947004 NP_417026.1 CDS iscR NC_000913.2 2659665 2660153 R Fe-S cluster-containing transcription factor transcriptional repressor of iscRSUA operon; GO_process: translation [goid 0006412]; DNA-binding transcriptional repressor complement(2659665..2660153) Escherichia coli K12 945279 NP_417027.1 CDS trmJ NC_000913.2 2660605 2661345 R predicted methyltransferase complement(2660605..2661345) Escherichia coli K12 948610 NP_417028.1 CDS suhB NC_000913.2 2661464 2662267 D inositol-1-monophosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; inositol monophosphatase 2661464..2662267 Escherichia coli K12 947285 NP_417029.3 CDS yfhR NC_000913.2 2662385 2663266 D putative enzyme (3.4.-); predicted peptidase 2662385..2663266 Escherichia coli K12 945059 NP_417030.2 CDS csiE NC_000913.2 2663457 2664737 D stationary phase inducible protein 2663457..2664737 Escherichia coli K12 947009 NP_417031.1 CDS hcaT NC_000913.2 2664729 2665868 R MFS (major facilitator superfamily) transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted 3-phenylpropionic transporter complement(2664729..2665868) Escherichia coli K12 947007 NP_417032.1 CDS hcaR NC_000913.2 2666028 2666918 R transcriptional activator of hca cluster; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism complement(2666028..2666918) Escherichia coli K12 947000 NP_417033.1 CDS hcaE NC_000913.2 2667054 2668415 D GO_process: carbohydrate catabolic process [goid 0016052]; 3-phenylpropionate dioxygenase, large (alpha) subunit 2667054..2668415 Escherichia coli K12 946998 NP_417034.1 CDS hcaF NC_000913.2 2668412 2668930 D small terminal subunit of phenylpropionate dioxygenase; GO_process: carbohydrate catabolic process [goid 0016052]; 3-phenylpropionate dioxygenase, small (beta) subunit 2668412..2668930 Escherichia coli K12 946997 NP_417035.1 CDS hcaC NC_000913.2 2668930 2669250 D ferredoxin subunit of phenylpropionate dioxygenase; GO_process: carbohydrate catabolic process [goid 0016052]; 3-phenylpropionate dioxygenase, predicted ferredoxin subunit 2668930..2669250 Escherichia coli K12 947015 NP_417036.1 CDS hcaB NC_000913.2 2669247 2670059 D GO_process: carbohydrate catabolic process [goid 0016052]; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2669247..2670059 Escherichia coli K12 945346 NP_417037.1 CDS hcaD NC_000913.2 2670069 2671271 D ferredoxin reductase subunit of phenylpropionate dioxygenase; GO_process: carbohydrate catabolic process [goid 0016052]; phenylpropionate dioxygenase, ferredoxin reductase subunit 2670069..2671271 Escherichia coli K12 945427 NP_417038.4 CDS yphA NC_000913.2 2671368 2671790 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 2671368..2671790 Escherichia coli K12 947365 NP_417039.1 CDS yphB NC_000913.2 2671838 2672710 R conserved protein complement(2671838..2672710) Escherichia coli K12 947017 NP_417040.2 CDS yphC NC_000913.2 2672722 2673783 R putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding complement(2672722..2673783) Escherichia coli K12 947019 NP_417041.1 CDS yphD NC_000913.2 2673849 2674847 R putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily complement(2673849..2674847) Escherichia coli K12 949063 NP_417042.1 CDS yphE NC_000913.2 2674872 2676383 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components complement(2674872..2676383) Escherichia coli K12 948990 NP_417043.1 CDS yphF NC_000913.2 2676406 2677389 R putative LACI-type transcriptional regulator; GO_component: periplasmic space [goid 0042597]; predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily complement(2676406..2677389) Escherichia coli K12 947020 NP_417044.4 CDS yphG NC_000913.2 2677486 2680767 R conserved protein complement(2677486..2680767) Escherichia coli K12 947021 NP_417045.4 CDS yphH NC_000913.2 2680885 2682078 D putative NAGC-like transcriptional regulator; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 2680885..2682078 Escherichia coli K12 947023 NP_417046.1 CDS glyA NC_000913.2 2682276 2683529 R GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: folic acid biosynthetic process [goid 0046656]; serine hydroxymethyltransferase complement(2682276..2683529) Escherichia coli K12 947022 NP_417047.1 CDS hmp NC_000913.2 2683857 2685047 D dihydropteridine reductase, ferrisiderophore reductase activity; fused nitric oxide dioxygenase/dihydropteridine reductase 2 2683857..2685047 Escherichia coli K12 947018 NP_417048.1 CDS glnB NC_000913.2 2685092 2685430 R GO_component: cytoplasm [goid 0005737]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: transcription [goid 0006350]; regulatory protein P-II for glutamine synthetase complement(2685092..2685430) Escherichia coli K12 947016 NP_417049.1 CDS yfhA NC_000913.2 2685491 2686825 R putative 2-component transcriptional regulator; GO_process: protein modification [goid 0006464]; predicted DNA-binding response regulator in two-component system complement(2685491..2686825) Escherichia coli K12 947042 NP_417050.1 CDS yfhG NC_000913.2 2686815 2687528 R putative alpha helix protein; conserved protein complement(2686815..2687528) Escherichia coli K12 947010 NP_417051.2 CDS yfhK NC_000913.2 2687693 2689120 R putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; predicted sensory kinase in two-component system complement(2687693..2689120) Escherichia coli K12 947013 YP_026170.1 CDS purL NC_000913.2 2689678 2693565 R phosphoribosylformyl-glycineamide synthetase = FGAM synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylformyl-glycineamide synthetase complement(2689678..2693565) Escherichia coli K12 947032 NP_417053.1 CDS yfhD NC_000913.2 2693961 2695379 D putative periplasmic binding transport protein; GO_component: periplasmic space [goid 0042597]; predicted transglycosylase 2693961..2695379 Escherichia coli K12 947028 NP_417054.2 CDS tadA NC_000913.2 2695376 2695879 R GO_process: RNA modification [goid 0009451]; tRNA-specific adenosine deaminase complement(2695376..2695879) Escherichia coli K12 947027 NP_417055.4 CDS yfhB NC_000913.2 2695937 2696572 R conserved protein complement(2695937..2696572) Escherichia coli K12 947026 NP_417056.2 CDS yfhH NC_000913.2 2696781 2697629 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted DNA-binding transcriptional regulator 2696781..2697629 Escherichia coli K12 947030 NP_417057.1 CDS yfhL NC_000913.2 2697685 2697945 D GO_function: electron carrier activity [goid 0009055]; predicted 4Fe-4S cluster-containing protein 2697685..2697945 Escherichia coli K12 947031 NP_417058.1 CDS acpS NC_000913.2 2698640 2699020 R CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase; GO_component: cytoplasm [goid 0005737]; holo-[acyl-carrier-protein] synthase 1 complement(2698640..2699020) Escherichia coli K12 947037 NP_417059.1 CDS pdxJ NC_000913.2 2699020 2699751 R pyridoxine biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; pyridoxine 5'-phosphate synthase complement(2699020..2699751) Escherichia coli K12 947039 NP_417060.1 CDS recO NC_000913.2 2699763 2700491 R protein interacts with RecR and possibly RecF proteins; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; gap repair protein complement(2699763..2700491) Escherichia coli K12 947038 NP_417061.1 CDS era NC_000913.2 2700503 2701408 R GTP-binding protein; GO_process: cell cycle [goid 0007049]; membrane-associated, 16S rRNA-binding GTPase complement(2700503..2701408) Escherichia coli K12 947036 NP_417062.1 CDS rnc NC_000913.2 2701405 2702085 R RNase III, ds RNA; GO_process: RNA catabolic process [goid 0006401]; RNase III complement(2701405..2702085) Escherichia coli K12 947033 NP_417063.1 CDS lepB NC_000913.2 2702357 2703331 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; leader peptidase (signal peptidase I) complement(2702357..2703331) Escherichia coli K12 947040 NP_417064.1 CDS lepA NC_000913.2 2703347 2705146 R GTP-binding elongation factor, may be inner membrane protein; GO_process: translation [goid 0006412]; GTP-binding membrane protein complement(2703347..2705146) Escherichia coli K12 947051 NP_417065.1 CDS rseC NC_000913.2 2705344 2705823 R sigma-E factor, negative regulatory protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: transcription [goid 0006350]; GO_process: response to starvation [goid 0042594]; RseC protein involved in reduction of the SoxR iron-sulfur cluster complement(2705344..2705823) Escherichia coli K12 947052 NP_417066.1 CDS rseB NC_000913.2 2705820 2706776 R regulates activity of sigma-E factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to starvation [goid 0042594]; anti-sigma factor complement(2705820..2706776) Escherichia coli K12 947054 NP_417067.1 CDS rseA NC_000913.2 2706776 2707426 R sigma-E factor, negative regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; anti-sigma factor complement(2706776..2707426) Escherichia coli K12 947053 NP_417068.1 CDS rpoE NC_000913.2 2707459 2708034 R RNA polymerase, sigma-E factor; heat shock and oxidative stress; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; RNA polymerase, sigma 24 (sigma E) factor complement(2707459..2708034) Escherichia coli K12 947050 NP_417069.1 CDS nadB NC_000913.2 2708442 2710064 D quinolinate synthetase, B protein; GO_process: NAD biosynthetic process [goid 0009435]; quinolinate synthase, L-aspartate oxidase (B protein) subunit 2708442..2710064 Escherichia coli K12 947049 NP_417070.2 CDS yfiC NC_000913.2 2710049 2710786 R putative enzyme; predicted S-adenosyl-L-methionine-dependent methyltransferase complement(2710049..2710786) Escherichia coli K12 947047 NP_417071.1 CDS srmB NC_000913.2 2710918 2712252 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ATP-dependent RNA helicase 2710918..2712252 Escherichia coli K12 947055 NP_417072.4 CDS yfiE NC_000913.2 2712461 2713342 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2712461..2713342) Escherichia coli K12 947064 NP_417073.1 CDS eamB NC_000913.2 2713445 2714032 D neutral amino-acid efflux system 2713445..2714032 Escherichia coli K12 947065 NP_417074.1 CDS yfiD NC_000913.2 2714088 2714471 R putative formate acetyltransferase; GO_process: anaerobic respiration [goid 0009061]; pyruvate formate lyase subunit complement(2714088..2714471) Escherichia coli K12 947068 NP_417075.1 CDS ung NC_000913.2 2714776 2715465 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; uracil-DNA-glycosylase 2714776..2715465 Escherichia coli K12 947067 NP_417076.1 CDS yfiF NC_000913.2 2715513 2716550 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; predicted methyltransferase complement(2715513..2716550) Escherichia coli K12 947066 NP_417077.1 CDS trxC NC_000913.2 2716757 2717176 D putative thioredoxin-like protein; thioredoxin 2 2716757..2717176 Escherichia coli K12 947062 NP_417078.4 CDS yfiP NC_000913.2 2717245 2717943 D conserved protein 2717245..2717943 Escherichia coli K12 947057 NP_417079.1 CDS yfiQ NC_000913.2 2717975 2720635 D fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit 2717975..2720635 Escherichia coli K12 947056 NP_417080.4 CDS pssA NC_000913.2 2720749 2722104 D phosphatidylserine synthase; phospholipid synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) 2720749..2722104 Escherichia coli K12 947059 NP_417081.2 CDS yfiM NC_000913.2 2722150 2722473 D predicted protein 2722150..2722473 Escherichia coli K12 947060 NP_417082.1 CDS kgtP NC_000913.2 2722470 2723768 R alpha-ketoglutarate permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; alpha-ketoglutarate transporter complement(2722470..2723768) Escherichia coli K12 947069 NP_417083.1 CDS clpB NC_000913.2 2729622 2732195 R heat shock protein; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; protein disaggregation chaperone complement(2729622..2732195) Escherichia coli K12 947077 NP_417084.1 CDS yfiH NC_000913.2 2732325 2733056 R conserved protein complement(2732325..2733056) Escherichia coli K12 947089 NP_417085.1 CDS rluD NC_000913.2 2733053 2734033 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridine synthase complement(2733053..2734033) Escherichia coli K12 947087 NP_417086.1 CDS yfiO NC_000913.2 2734168 2734905 D predicted lipoprotein 2734168..2734905 Escherichia coli K12 947086 NP_417088.1 CDS raiA NC_000913.2 2735176 2735517 D putative yhbH sigma 54 modulator; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_process: translation [goid 0006412]; cold shock protein associated with 30S ribosomal subunit 2735176..2735517 Escherichia coli K12 947129 NP_417089.1 CDS pheL NC_000913.2 2735621 2735668 D leader peptide of chorismate mutase-P-prephenate dehydratase; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; pheA gene leader peptide 2735621..2735668 Escherichia coli K12 947080 NP_417090.1 CDS pheA NC_000913.2 2735767 2736927 D chorismate mutase-P and prephenate dehydratase; GO_component: cytoplasm [goid 0005737]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; fused chorismate mutase P/prephenate dehydratase 2735767..2736927 Escherichia coli K12 947081 NP_417091.1 CDS tyrA NC_000913.2 2736970 2738091 R chorismate mutase-T and prephenate dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; fused chorismate mutase T/prephenate dehydrogenase complement(2736970..2738091) Escherichia coli K12 947115 NP_417092.1 CDS aroF NC_000913.2 2738102 2739172 R 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tyrosine repressible); GO_process: chorismate biosynthetic process [goid 0009423]; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible complement(2738102..2739172) Escherichia coli K12 947084 NP_417093.2 CDS yfiL NC_000913.2 2739382 2739747 D predicted protein 2739382..2739747 Escherichia coli K12 947106 NP_417094.1 CDS yfiR NC_000913.2 2739897 2740415 D predicted protein 2739897..2740415 Escherichia coli K12 947090 NP_417095.1 CDS yfiN NC_000913.2 2740405 2741631 D predicted diguanylate cyclase 2740405..2741631 Escherichia coli K12 947091 NP_417096.1 CDS yfiB NC_000913.2 2741647 2742129 D putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane lipoprotein 2741647..2742129 Escherichia coli K12 947094 NP_417097.1 CDS rplS NC_000913.2 2742205 2742552 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L19 complement(2742205..2742552) Escherichia coli K12 947096 NP_417098.1 CDS trmD NC_000913.2 2742594 2743361 R tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA (guanine-1-)-methyltransferase complement(2742594..2743361) Escherichia coli K12 947099 NP_417099.4 CDS rimM NC_000913.2 2743392 2743940 R GO_process: RNA modification [goid 0009451]; 16S rRNA processing protein complement(2743392..2743940) Escherichia coli K12 947101 NP_417100.1 CDS rpsP NC_000913.2 2743959 2744207 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S16 complement(2743959..2744207) Escherichia coli K12 947103 NP_417101.1 CDS ffh NC_000913.2 2744456 2745817 R GTP-binding export factor binds to signal sequence, GTP and RNA; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) complement(2744456..2745817) Escherichia coli K12 947102 NP_417102.4 CDS ypjD NC_000913.2 2745984 2746775 D predicted inner membrane protein 2745984..2746775 Escherichia coli K12 947098 YP_026171.3 CDS yfjD NC_000913.2 2746796 2748082 D putative membrane protein; predicted inner membrane protein 2746796..2748082 Escherichia coli K12 2847739 NP_417104.1 CDS grpE NC_000913.2 2748137 2748730 R phage lambda replication; host DNA synthesis; heat shock protein; protein repair; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; heat shock protein complement(2748137..2748730) Escherichia coli K12 947097 NP_417105.1 CDS nadK NC_000913.2 2748853 2749731 D NAD kinase 2748853..2749731 Escherichia coli K12 947092 YP_026172.1 CDS recN NC_000913.2 2749817 2751478 D protein used in recombination and DNA repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; recombination and repair protein 2749817..2751478 Escherichia coli K12 947105 NP_417107.2 CDS smpA NC_000913.2 2751627 2751968 D small membrane protein A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; small membrane lipoprotein 2751627..2751968 Escherichia coli K12 945583 NP_417108.4 CDS yfjF NC_000913.2 2752030 2752320 R predicted protein complement(2752030..2752320) Escherichia coli K12 945078 NP_417109.1 CDS yfjG NC_000913.2 2752310 2752786 R conserved protein complement(2752310..2752786) Escherichia coli K12 945614 NP_417110.1 CDS smpB NC_000913.2 2752918 2753400 D small protein B; trans-translation protein 2752918..2753400 Escherichia coli K12 947296 NP_417111.1 CDS intA NC_000913.2 2754181 2755422 D prophage CP4-57 integrase; CP4-57 prophage; integrase 2754181..2755422 Escherichia coli K12 946160 NP_417112.1 CDS yfjH NC_000913.2 2755666 2756622 R putative histone; CP4-57 prophage; predicted protein complement(2755666..2756622) Escherichia coli K12 946123 NP_417113.1 CDS alpA NC_000913.2 2756666 2756878 D prophage CP4-57 regulatory protein alpA; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; CP4-57 prophage; DNA-binding transcriptional activator 2756666..2756878 Escherichia coli K12 946758 NP_417114.1 CDS yfjI NC_000913.2 2757007 2758416 D CP4-57 prophage; predicted protein 2757007..2758416 Escherichia coli K12 944764 NP_417115.1 CDS yfjJ NC_000913.2 2758569 2759195 D CP4-57 prophage; predicted protein 2758569..2759195 Escherichia coli K12 947112 NP_417116.1 CDS yfjK NC_000913.2 2759373 2761562 R CP4-57 prophage; conserved protein complement(2759373..2761562) Escherichia coli K12 947111 NP_417117.1 CDS yfjL NC_000913.2 2761559 2763175 R CP4-57 prophage; predicted protein complement(2761559..2763175) Escherichia coli K12 947110 NP_417118.1 CDS yfjM NC_000913.2 2763535 2763798 R CP4-57 prophage; predicted protein complement(2763535..2763798) Escherichia coli K12 947108 NP_417119.1 CDS rnlA NC_000913.2 2763940 2765013 D putative cell division protein; CP4-57 prophage; RNase LS 2763940..2765013 Escherichia coli K12 947107 NP_417120.2 CDS yfjO NC_000913.2 2765006 2765377 D CP4-57 prophage; predicted protein 2765006..2765377 Escherichia coli K12 947113 YP_026173.1 CDS yfjP NC_000913.2 2765732 2766595 D putative GTP-binding protein; CP4-57 prophage; predicted GTP-binding protein 2765732..2766595 Escherichia coli K12 947124 NP_417122.1 CDS yfjQ NC_000913.2 2766687 2767508 D CP4-57 prophage; predicted protein 2766687..2767508 Escherichia coli K12 947127 NP_417123.1 CDS yfjR NC_000913.2 2767725 2768426 D CP4-57 prophage; predicted DNA-binding transcriptional regulator 2767725..2768426 Escherichia coli K12 947309 YP_026174.2 CDS ypjK NC_000913.2 2768467 2768703 D CP4-57 prophage; predicted inner membrane protein 2768467..2768703 Escherichia coli K12 2847710 NP_417124.4 CDS yfjS NC_000913.2 2768703 2769146 D CP4-57 prophage; predicted protein 2768703..2769146 Escherichia coli K12 945668 NP_417125.1 CDS yfjT NC_000913.2 2769170 2769637 D CP4-57 prophage; predicted protein 2769170..2769637 Escherichia coli K12 947616 b2638 CDS yfjU NC_000913.2 2770024 2770176 R CP4-57 prophage; conserved protein; complement(2770024..2770176) Escherichia coli K12 945062 b2641 CDS yfjV NC_000913.2 2770189 2771204 R pseudogene, CP4-57 prophage putative pump protein; complement(join(2770189..2771088,2771088..2771204)) Escherichia coli K12 947563 NP_417129.1 CDS yfjW NC_000913.2 2771340 2773043 D CP4-57 prophage; predicted inner membrane protein 2771340..2773043 Escherichia coli K12 947128 b4644 CDS ypjI NC_000913.2 2773567 2773838 D pseudogene, CP4-57 putative prophage remnant; join(2773567..2773746,2773746..2773838) Escherichia coli K12 5625570 NP_417130.1 CDS yfjX NC_000913.2 2773941 2774399 D CP4-57 prophage; predicted antirestriction protein 2773941..2774399 Escherichia coli K12 947126 NP_417131.1 CDS yfjY NC_000913.2 2774408 2774890 D putative DNA repair protein; CP4-57 prophage; predicted DNA repair protein 2774408..2774890 Escherichia coli K12 947125 YP_588466.1 CDS ypjJ NC_000913.2 2774899 2775099 D GO_component: cytoplasm [goid 0005737]; predicted protein 2774899..2775099 Escherichia coli K12 1450287 NP_417132.1 CDS yfjZ NC_000913.2 2775137 2775454 D CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system 2775137..2775454 Escherichia coli K12 947123 NP_417133.1 CDS ypjF NC_000913.2 2775475 2775804 D CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system 2775475..2775804 Escherichia coli K12 947131 NP_417134.2 CDS ypjA NC_000913.2 2776168 2780748 R putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; adhesin-like autotransporter complement(2776168..2780748) Escherichia coli K12 948630 b2648 CDS pinH NC_000913.2 2781087 2781326 R pseudogene, predicted invertase fragment; complement(2781087..2781326) Escherichia coli K12 947250 b2650 CDS ypjC NC_000913.2 2781660 2783033 R predicted protein; complement(2781660..2783033) Escherichia coli K12 947640 b4462 CDS ygaQ NC_000913.2 2784419 2786671 D predicted protein putative enzyme; 2784419..2786671 Escherichia coli K12 2847762 NP_417145.4 CDS csiD NC_000913.2 2787007 2787984 D predicted protein 2787007..2787984 Escherichia coli K12 948076 NP_417146.2 CDS ygaF NC_000913.2 2788004 2789272 D predicted enzyme 2788004..2789272 Escherichia coli K12 948069 NP_417147.1 CDS gabD NC_000913.2 2789295 2790743 D succinate-semialdehyde dehydrogenase, NADP-dependent activity; GO_process: gamma-aminobutyric acid catabolic process [goid 0009450]; GO_process: putrescine catabolic process [goid 0009447]; succinate-semialdehyde dehydrogenase I, NADP-dependent 2789295..2790743 Escherichia coli K12 948060 NP_417148.1 CDS gabT NC_000913.2 2790757 2792037 D 4-aminobutyrate aminotransferase activity; GO_process: gamma-aminobutyric acid catabolic process [goid 0009450]; GO_process: putrescine catabolic process [goid 0009447]; 4-aminobutyrate aminotransferase, PLP-dependent 2790757..2792037 Escherichia coli K12 948067 NP_417149.1 CDS gabP NC_000913.2 2792275 2793675 D transport permease protein of gamma-aminobutyrate; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; gamma-aminobutyrate transporter 2792275..2793675 Escherichia coli K12 948049 NP_417150.4 CDS csiR NC_000913.2 2793696 2794358 D putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 2793696..2794358 Escherichia coli K12 948055 NP_417151.1 CDS ygaU NC_000913.2 2794359 2794808 R predicted protein complement(2794359..2794808) Escherichia coli K12 947144 NP_417152.1 CDS yqaE NC_000913.2 2794892 2795050 R predicted membrane protein complement(2794892..2795050) Escherichia coli K12 947138 NP_417153.1 CDS ygaV NC_000913.2 2795233 2795532 D predicted DNA-binding transcriptional regulator 2795233..2795532 Escherichia coli K12 947136 NP_417154.1 CDS ygaP NC_000913.2 2795542 2796066 D predicted inner membrane protein with hydrolase activity 2795542..2796066 Escherichia coli K12 947135 NP_417155.1 CDS stpA NC_000913.2 2796113 2796517 R DNA-binding protein; H-NS-like protein; chaperone activity; RNA splicing?; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; DNA binding protein, nucleoid-associated complement(2796113..2796517) Escherichia coli K12 947130 NP_417156.1 CDS ygaW NC_000913.2 2797186 2797635 D predicted inner membrane protein 2797186..2797635 Escherichia coli K12 947147 NP_417157.1 CDS ygaC NC_000913.2 2797672 2798016 R predicted protein complement(2797672..2798016) Escherichia coli K12 947156 NP_417158.3 CDS ygaM NC_000913.2 2798156 2798497 D predicted protein 2798156..2798497 Escherichia coli K12 947157 NP_417159.1 CDS nrdH NC_000913.2 2798745 2798990 D glutaredoxin-like protein; hydrogen donor; glutaredoxin-like protein 2798745..2798990 Escherichia coli K12 947161 NP_417160.1 CDS nrdI NC_000913.2 2798987 2799397 D protein that stimulates ribonucleotide reduction 2798987..2799397 Escherichia coli K12 947158 NP_417161.1 CDS nrdE NC_000913.2 2799370 2801514 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside-diphosphate reductase 2, alpha subunit 2799370..2801514 Escherichia coli K12 947155 NP_417162.1 CDS nrdF NC_000913.2 2801524 2802483 D ribonucleoside-diphosphate reductase 2, beta chain, frag; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein 2801524..2802483 Escherichia coli K12 947149 NP_417163.1 CDS proV NC_000913.2 2802837 2804039 D ATP-binding component of transport system for glycine, betaine and proline; GO_component: cytoplasm [goid 0005737]; GO_function: glycine betaine/proline porter activity [goid 0015596]; GO_process: proline biosynthetic process [goid 0006561]; glycine betaine transporter subunit 2802837..2804039 Escherichia coli K12 947148 NP_417164.1 CDS proW NC_000913.2 2804032 2805096 D high-affinity transport system for glycine betaine and proline; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: glycine betaine/proline porter activity [goid 0015596]; GO_process: proline biosynthetic process [goid 0006561]; glycine betaine transporter subunit 2804032..2805096 Escherichia coli K12 947145 NP_417165.1 CDS proX NC_000913.2 2805154 2806146 D high-affinity transport system for glycine betaine and proline; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_function: glycine betaine/proline porter activity [goid 0015596]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: proline biosynthetic process [goid 0006561]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: betaine biosynthetic process [goid 0006578]; GO_process: response to osmotic stress [goid 0006970]; glycine betaine transporter subunit 2805154..2806146 Escherichia coli K12 947165 b2681 CDS ygaY NC_000913.2 2806338 2807515 D predicted transporter (pseudogene);putative transport; Not classified putative transport protein; GO_process: response to stress [goid 0006950]; 2806338..2807515 Escherichia coli K12 2847696 NP_417167.1 CDS ygaZ NC_000913.2 2807639 2808376 D predicted transporter 2807639..2808376 Escherichia coli K12 945093 NP_417168.1 CDS ygaH NC_000913.2 2808366 2808701 D predicted inner membrane protein 2808366..2808701 Escherichia coli K12 945111 NP_417169.1 CDS mprA NC_000913.2 2808792 2809322 D regulator of plasmid mcrB operon (microcin B17 synthesis); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux 2808792..2809322 Escherichia coli K12 945282 NP_417170.1 CDS emrA NC_000913.2 2809449 2810621 D multidrug resistance secretion protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system 2809449..2810621 Escherichia coli K12 947166 NP_417171.1 CDS emrB NC_000913.2 2810638 2812176 D multidrug resistance; probably membrane translocase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 2810638..2812176 Escherichia coli K12 947167 NP_417172.1 CDS luxS NC_000913.2 2812240 2812755 R S-ribosylhomocysteinase complement(2812240..2812755) Escherichia coli K12 947168 NP_417173.1 CDS gshA NC_000913.2 2812905 2814461 R GO_process: glutathione biosynthetic process [goid 0006750]; gamma-glutamate-cysteine ligase complement(2812905..2814461) Escherichia coli K12 944881 NP_417174.1 CDS yqaA NC_000913.2 2814534 2814962 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(2814534..2814962) Escherichia coli K12 945419 NP_417175.1 CDS yqaB NC_000913.2 2814959 2815525 R putative phosphatase; predicted hydrolase complement(2814959..2815525) Escherichia coli K12 945776 NP_417176.1 CDS csrA NC_000913.2 2816983 2817168 R carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; GO_process: RNA catabolic process [goid 0006401]; GO_process: translational attenuation [goid 0009386]; GO_process: taxis [goid 0042330]; pleiotropic regulatory protein for carbon source metabolism complement(2816983..2817168) Escherichia coli K12 947176 NP_417177.1 CDS alaS NC_000913.2 2817403 2820033 R GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; alanyl-tRNA synthetase complement(2817403..2820033) Escherichia coli K12 947175 NP_417178.1 CDS recX NC_000913.2 2820161 2820661 R regulator, OraA protein; regulatory protein for RecA complement(2820161..2820661) Escherichia coli K12 947172 NP_417179.1 CDS recA NC_000913.2 2820730 2821791 R DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: DNA recombination [goid 0006310]; GO_process: DNA repair [goid 0006281]; GO_process: proteolysis [goid 0006508]; GO_process: SOS response [goid 0009432]; DNA strand exchange and recombination protein with protease and nuclease activity complement(2820730..2821791) Escherichia coli K12 947170 NP_417180.1 CDS ygaD NC_000913.2 2821871 2822368 R conserved protein complement(2821871..2822368) Escherichia coli K12 947169 NP_417181.1 CDS mltB NC_000913.2 2822513 2823598 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; membrane-bound lytic murein transglycosylase B complement(2822513..2823598) Escherichia coli K12 947184 YP_026180.1 CDS srlA NC_000913.2 2823854 2824417 D PTS system, glucitol/sorbitol-specific IIC component, one of two; GO_process: carbohydrate catabolic process [goid 0016052]; glucitol/sorbitol-specific enzyme IIC component of PTS 2823854..2824417 Escherichia coli K12 947575 YP_026181.1 CDS srlE NC_000913.2 2824414 2825373 D PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components; GO_process: carbohydrate catabolic process [goid 0016052]; glucitol/sorbitol-specific enzyme IIB component of PTS 2824414..2825373 Escherichia coli K12 948933 NP_417184.1 CDS srlB NC_000913.2 2825384 2825755 D PTS system, glucitol/sorbitol-specific enzyme IIA component; GO_process: carbohydrate catabolic process [goid 0016052]; glucitol/sorbitol-specific enzyme IIA component of PTS 2825384..2825755 Escherichia coli K12 948971 NP_417185.1 CDS srlD NC_000913.2 2825759 2826538 D glucitol (sorbitol)-6-phosphate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; sorbitol-6-phosphate dehydrogenase 2825759..2826538 Escherichia coli K12 948937 NP_417186.1 CDS gutM NC_000913.2 2826643 2827002 D glucitol operon activator; GO_process: carbohydrate catabolic process [goid 0016052]; DNA-binding transcriptional activator of glucitol operon 2826643..2827002 Escherichia coli K12 948938 NP_417187.1 CDS srlR NC_000913.2 2827069 2827842 D regulator for gut (srl), glucitol operon; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-bindng transcriptional repressor 2827069..2827842 Escherichia coli K12 948942 NP_417188.4 CDS gutQ NC_000913.2 2827835 2828800 D predicted phosphosugar-binding protein 2827835..2828800 Escherichia coli K12 947587 NP_417189.2 CDS norR NC_000913.2 2828797 2830311 R putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(2828797..2830311) Escherichia coli K12 947186 NP_417190.1 CDS norV NC_000913.2 2830498 2831937 D putative flavodoxin; GO_function: electron carrier activity [goid 0009055]; flavorubredoxin oxidoreductase 2830498..2831937 Escherichia coli K12 948979 NP_417191.1 CDS norW NC_000913.2 2831934 2833067 D putative oxidoreductase; NADH:flavorubredoxin oxidoreductase 2831934..2833067 Escherichia coli K12 947088 NP_417192.1 CDS hypF NC_000913.2 2833195 2835447 R transcriptional regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases complement(2833195..2835447) Escherichia coli K12 944963 NP_417193.1 CDS hydN NC_000913.2 2835600 2836127 R involved in electron transport from formate to hydrogen, Fe-S centers; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit complement(2835600..2836127) Escherichia coli K12 947190 NP_417194.1 CDS ascG NC_000913.2 2836276 2837289 R ascBF operon repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(2836276..2837289) Escherichia coli K12 947305 YP_026182.1 CDS ascF NC_000913.2 2837546 2839003 D PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component 2837546..2839003 Escherichia coli K12 947154 NP_417196.1 CDS ascB NC_000913.2 2839012 2840436 D 6-phospho-beta-glucosidase; cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic 6-phospho-beta-glucosidase 2839012..2840436 Escherichia coli K12 947460 NP_417197.1 CDS hycI NC_000913.2 2840595 2841065 R protease involved in processing C-terminal end of the large subunit of hydrogenase 3; GO_process: protein folding [goid 0006457]; protease involved in processing C-terminal end of HycE complement(2840595..2841065) Escherichia coli K12 947428 NP_417198.1 CDS hycH NC_000913.2 2841058 2841468 R processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex); GO_process: fermentation [goid 0006113]; protein required for maturation of hydrogenase 3 complement(2841058..2841468) Escherichia coli K12 947438 NP_417199.1 CDS hycG NC_000913.2 2841465 2842232 R hydrogenase activity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 3 and formate hydrogenase complex, HycG subunit complement(2841465..2842232) Escherichia coli K12 947191 NP_417200.1 CDS hycF NC_000913.2 2842232 2842774 R probable iron-sulfur protein of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; formate hydrogenlyase complex iron-sulfur protein complement(2842232..2842774) Escherichia coli K12 947048 NP_417201.1 CDS hycE NC_000913.2 2842784 2844493 R large subunit of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 3, large subunit complement(2842784..2844493) Escherichia coli K12 947396 NP_417202.1 CDS hycD NC_000913.2 2844511 2845434 R membrane-spanning protein of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; hydrogenase 3, membrane subunit complement(2844511..2845434) Escherichia coli K12 948994 NP_417203.1 CDS hycC NC_000913.2 2845437 2847263 R membrane-spanning protein of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; hydrogenase 3, membrane subunit complement(2845437..2847263) Escherichia coli K12 945327 NP_417204.1 CDS hycB NC_000913.2 2847260 2847871 R probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex); GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 3, Fe-S subunit complement(2847260..2847871) Escherichia coli K12 948002 NP_417205.1 CDS hycA NC_000913.2 2847996 2848457 R transcriptional repression of hyc and hyp operons; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: fermentation [goid 0006113]; GO_process: transcription [goid 0006350]; regulator of the transcriptional regulator FhlA complement(2847996..2848457) Escherichia coli K12 947193 NP_417206.1 CDS hypA NC_000913.2 2848669 2849019 D pleiotrophic effects on 3 hydrogenase isozymes; GO_process: anaerobic respiration [goid 0009061]; protein involved in nickel insertion into hydrogenases 3 2848669..2849019 Escherichia coli K12 947195 NP_417207.1 CDS hypB NC_000913.2 2849023 2849895 D guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3; GO_process: fermentation [goid 0006113]; GO_process: protein folding [goid 0006457]; GTP hydrolase involved in nickel liganding into hydrogenases 2849023..2849895 Escherichia coli K12 947194 NP_417208.1 CDS hypC NC_000913.2 2849886 2850158 D pleiotrophic effects on 3 hydrogenase isozymes; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; protein required for maturation of hydrogenases 1 and 3 2849886..2850158 Escherichia coli K12 947192 NP_417209.1 CDS hypD NC_000913.2 2850158 2851279 D pleiotrophic effects on 3 hydrogenase isozymes; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; protein required for maturation of hydrogenases 2850158..2851279 Escherichia coli K12 947189 NP_417210.1 CDS hypE NC_000913.2 2851318 2852286 D plays structural role in maturation of all 3 hydrogenases; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein 2851318..2852286 Escherichia coli K12 947182 NP_417211.1 CDS fhlA NC_000913.2 2852360 2854438 D formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fermentation [goid 0006113]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 2852360..2854438 Escherichia coli K12 947181 NP_417212.1 CDS ygbA NC_000913.2 2854475 2854828 R predicted protein complement(2854475..2854828) Escherichia coli K12 947187 NP_417213.1 CDS mutS NC_000913.2 2855115 2857676 D methyl-directed mismatch repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; methyl-directed mismatch repair protein 2855115..2857676 Escherichia coli K12 947206 NP_417214.1 CDS pphB NC_000913.2 2857782 2858438 D protein phosphatase 2; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; serine/threonine-specific protein phosphatase 2 2857782..2858438 Escherichia coli K12 947196 NP_417215.1 CDS ygbI NC_000913.2 2858489 2859286 R putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(2858489..2859286) Escherichia coli K12 947204 NP_417216.1 CDS ygbJ NC_000913.2 2859452 2860360 D putative dehydrogenase; predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain 2859452..2860360 Escherichia coli K12 947200 NP_417217.1 CDS ygbK NC_000913.2 2860357 2861523 D conserved protein 2860357..2861523 Escherichia coli K12 947199 NP_417218.1 CDS ygbL NC_000913.2 2861615 2862253 D putative epimerase/aldolase; predicted class II aldolase 2861615..2862253 Escherichia coli K12 947197 NP_417219.1 CDS ygbM NC_000913.2 2862258 2863034 D conserved protein 2862258..2863034 Escherichia coli K12 947207 NP_417220.1 CDS ygbN NC_000913.2 2863123 2864487 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2863123..2864487 Escherichia coli K12 947208 NP_417221.1 CDS rpoS NC_000913.2 2864581 2865573 R RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; RNA polymerase, sigma S (sigma 38) factor complement(2864581..2865573) Escherichia coli K12 947210 NP_417222.1 CDS nlpD NC_000913.2 2865636 2866775 R lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane lipoprotein complement(2865636..2866775) Escherichia coli K12 947011 NP_417223.1 CDS pcm NC_000913.2 2866915 2867541 R GO_process: protein modification [goid 0006464]; L-isoaspartate protein carboxylmethyltransferase type II complement(2866915..2867541) Escherichia coli K12 944923 NP_417224.1 CDS surE NC_000913.2 2867535 2868296 R survival protein; GO_process: response to stress [goid 0006950]; broad specificity 5'(3')-nucleotidase and polyphosphatase complement(2867535..2868296) Escherichia coli K12 947211 NP_417225.1 CDS truD NC_000913.2 2868277 2869326 R putative hydrogenase subunit; pseudoruidine synthase complement(2868277..2869326) Escherichia coli K12 947214 NP_417226.1 CDS ispF NC_000913.2 2869323 2869802 R GO_component: cytoplasm [goid 0005737]; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2869323..2869802) Escherichia coli K12 945057 NP_417227.1 CDS ispD NC_000913.2 2869802 2870512 R GO_component: cytoplasm [goid 0005737]; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(2869802..2870512) Escherichia coli K12 948269 NP_417228.1 CDS ftsB NC_000913.2 2870531 2870842 R cell division protein complement(2870531..2870842) Escherichia coli K12 946033 NP_417229.1 CDS ygbE NC_000913.2 2871036 2871359 R putative cytochrome oxidase subunit; conserved inner membrane protein complement(2871036..2871359) Escherichia coli K12 947268 NP_417230.1 CDS cysC NC_000913.2 2871409 2872014 R GO_process: sulfur metabolic process [goid 0006790]; adenosine 5'-phosphosulfate kinase complement(2871409..2872014) Escherichia coli K12 947221 NP_417231.1 CDS cysN NC_000913.2 2872014 2873441 R ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase; GO_process: sulfur metabolic process [goid 0006790]; sulfate adenylyltransferase, subunit 1 complement(2872014..2873441) Escherichia coli K12 947219 NP_417232.1 CDS cysD NC_000913.2 2873443 2874351 R ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2; GO_process: sulfur metabolic process [goid 0006790]; sulfate adenylyltransferase, subunit 2 complement(2873443..2874351) Escherichia coli K12 947217 NP_417233.1 CDS iap NC_000913.2 2874603 2875640 D GO_process: protein modification [goid 0006464]; aminopeptidase in alkaline phosphatase isozyme conversion 2874603..2875640 Escherichia coli K12 947215 NP_417234.2 CDS ygbF NC_000913.2 2876591 2876875 R predicted protein complement(2876591..2876875) Escherichia coli K12 947213 NP_417235.1 CDS ygbT NC_000913.2 2876877 2877794 R conserved protein complement(2876877..2877794) Escherichia coli K12 947228 NP_417236.1 CDS ygcH NC_000913.2 2877810 2878409 R predicted protein complement(2877810..2878409) Escherichia coli K12 947226 NP_417237.2 CDS ygcI NC_000913.2 2878396 2879070 R predicted protein complement(2878396..2879070) Escherichia coli K12 947225 NP_417238.1 CDS ygcJ NC_000913.2 2879073 2880164 R predicted protein complement(2879073..2880164) Escherichia coli K12 947224 NP_417239.1 CDS ygcK NC_000913.2 2880177 2880659 R predicted protein complement(2880177..2880659) Escherichia coli K12 947223 NP_417240.1 CDS ygcL NC_000913.2 2880652 2882160 R predicted protein complement(2880652..2882160) Escherichia coli K12 947222 NP_417241.1 CDS ygcB NC_000913.2 2882575 2885241 R conserved protein, member of DEAD box family complement(2882575..2885241) Escherichia coli K12 947229 NP_417242.1 CDS cysH NC_000913.2 2885600 2886334 R GO_process: sulfur metabolic process [goid 0006790]; 3'-phosphoadenosine 5'-phosphosulfate reductase complement(2885600..2886334) Escherichia coli K12 947230 NP_417243.1 CDS cysI NC_000913.2 2886409 2888121 R sulfite reductase, alpha subunit; GO_process: sulfur metabolic process [goid 0006790]; sulfite reductase, beta subunit, NAD(P)-binding, heme-binding complement(2886409..2888121) Escherichia coli K12 947231 NP_417244.1 CDS cysJ NC_000913.2 2888121 2889920 R sulfite reductase (NADPH), flavoprotein beta subunit; GO_process: sulfur metabolic process [goid 0006790]; sulfite reductase, alpha subunit, flavoprotein complement(2888121..2889920) Escherichia coli K12 947239 NP_417245.1 CDS sscR NC_000913.2 2890236 2890601 D putative 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) 2890236..2890601 Escherichia coli K12 945123 NP_417246.4 CDS ygcN NC_000913.2 2890679 2891950 D GO_function: electron carrier activity [goid 0009055]; predicted oxidoreductase with FAD/NAD(P)-binding domain 2890679..2891950 Escherichia coli K12 946114 NP_417247.2 CDS ygcO NC_000913.2 2891941 2892201 D GO_function: electron carrier activity [goid 0009055]; predicted 4Fe-4S cluster-containing protein 2891941..2892201 Escherichia coli K12 945120 NP_417248.1 CDS ygcP NC_000913.2 2892218 2892793 D putative anti-terminator regulatory protein; predicted anti-terminator regulatory protein 2892218..2892793 Escherichia coli K12 947536 NP_417249.4 CDS ygcQ NC_000913.2 2892941 2893801 R putative flavoprotein; GO_function: electron carrier activity [goid 0009055]; predicted flavoprotein complement(2892941..2893801) Escherichia coli K12 946413 NP_417250.4 CDS ygcR NC_000913.2 2893798 2894577 R putative transport protein; GO_function: electron carrier activity [goid 0009055]; predicted flavoprotein complement(2893798..2894577) Escherichia coli K12 947240 NP_417251.2 CDS ygcS NC_000913.2 2894555 2895892 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(2894555..2895892) Escherichia coli K12 947238 YP_026183.1 CDS ygcU NC_000913.2 2895986 2897440 R predicted FAD containing dehydrogenase complement(2895986..2897440) Escherichia coli K12 2847709 NP_417254.4 CDS ygcW NC_000913.2 2897510 2898295 R putative oxidoreductase; predicted deoxygluconate dehydrogenase complement(2897510..2898295) Escherichia coli K12 947232 NP_417255.1 CDS yqcE NC_000913.2 2898614 2899891 D putative transport protein; predicted transporter 2898614..2899891 Escherichia coli K12 947248 NP_417256.1 CDS ygcE NC_000913.2 2899918 2901396 D putative kinase; predicted kinase 2899918..2901396 Escherichia coli K12 946193 NP_417257.1 CDS ygcF NC_000913.2 2902769 2903440 R GO_process: coenzyme and prosthetic group biosynthetic process [goid 0046138]; conserved protein complement(2902769..2903440) Escherichia coli K12 947527 NP_417258.4 CDS ygcG NC_000913.2 2903733 2904605 D predicted protein 2903733..2904605 Escherichia coli K12 945247 NP_417259.1 CDS eno NC_000913.2 2904665 2905963 R GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: anaerobic respiration [goid 0009061]; GO_process: gluconeogenesis [goid 0006094]; enolase complement(2904665..2905963) Escherichia coli K12 945032 NP_417260.1 CDS pyrG NC_000913.2 2906051 2907688 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; CTP synthetase complement(2906051..2907688) Escherichia coli K12 946116 NP_417261.1 CDS mazG NC_000913.2 2907916 2908707 R nucleoside triphosphate pyrophosphohydrolase complement(2907916..2908707) Escherichia coli K12 947254 NP_417262.1 CDS chpA NC_000913.2 2908778 2909113 R probable growth inhibitor, PemK-like, autoregulated; toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease complement(2908778..2909113) Escherichia coli K12 947252 NP_417263.1 CDS chpR NC_000913.2 2909113 2909361 R suppressor of inhibitory function of ChpA, PemI-like, autoregulated; antitoxin of the ChpA-ChpR toxin-antitoxin system complement(2909113..2909361) Escherichia coli K12 947245 NP_417264.1 CDS relA NC_000913.2 2909439 2911673 R (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; (p)ppGpp synthetase I/GTP pyrophosphokinase complement(2909439..2911673) Escherichia coli K12 947244 NP_417265.1 CDS rumA NC_000913.2 2911721 2913022 R GO_process: RNA modification [goid 0009451]; 23S rRNA (uracil-5)-methyltransferase complement(2911721..2913022) Escherichia coli K12 947243 NP_417266.1 CDS barA NC_000913.2 2913079 2915835 D sensor-regulator, activates OmpR by phophorylation; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase, in two-component regulatory system with UvrY 2913079..2915835 Escherichia coli K12 947255 NP_417267.1 CDS gudD NC_000913.2 2916067 2917407 R (D)-glucarate dehydratase 1 (L)-idarate dehydratase (L)-idarate epimerase (D)-glucarate epimerase; GO_process: carbohydrate catabolic process [goid 0016052]; (D)-glucarate dehydratase 1 complement(2916067..2917407) Escherichia coli K12 947258 NP_417268.1 CDS gudX NC_000913.2 2917428 2918768 R putative (D)-glucarate dehydratase 2; GO_process: carbohydrate catabolic process [goid 0016052]; predicted glucarate dehydratase complement(2917428..2918768) Escherichia coli K12 947261 NP_417269.1 CDS gudP NC_000913.2 2918770 2920122 R putative D-glucarate permease (MFS family); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted D-glucarate transporter complement(2918770..2920122) Escherichia coli K12 947265 NP_417270.1 CDS yqcA NC_000913.2 2920557 2921006 R predicted flavoprotein complement(2920557..2921006) Escherichia coli K12 947151 NP_417271.1 CDS truC NC_000913.2 2921024 2921806 R tRNA pseudouridine synthase complement(2921024..2921806) Escherichia coli K12 947242 NP_417272.1 CDS yqcC NC_000913.2 2921806 2922135 R conserved protein complement(2921806..2922135) Escherichia coli K12 946027 NP_417273.1 CDS syd NC_000913.2 2922757 2923302 R interacts with secY; GO_component: cytoplasm [goid 0005737]; predicted protein complement(2922757..2923302) Escherichia coli K12 947271 NP_417274.1 CDS queF NC_000913.2 2923370 2924218 D conserved protein 2923370..2924218 Escherichia coli K12 947270 NP_417275.1 CDS ygdH NC_000913.2 2924330 2925694 D conserved protein 2924330..2925694 Escherichia coli K12 947266 NP_417276.1 CDS sdaC NC_000913.2 2926251 2927540 D probable serine transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-serine biosynthetic process [goid 0006564]; predicted serine transporter 2926251..2927540 Escherichia coli K12 947264 NP_417277.1 CDS sdaB NC_000913.2 2927598 2928965 D L-serine dehydratase (deaminase), L-SD2; GO_process: fatty acid oxidation [goid 0019395]; GO_process: amino acid catabolic process [goid 0009063]; L-serine deaminase II 2927598..2928965 Escherichia coli K12 947262 NP_417278.3 CDS xni NC_000913.2 2928987 2929832 D 5'-3' exonuclease; GO_process: DNA catabolic process [goid 0006308]; exonuclease IX (5'-3' exonuclease) 2928987..2929832 Escherichia coli K12 947256 NP_417279.1 CDS fucO NC_000913.2 2929887 2931038 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; L-1,2-propanediol oxidoreductase complement(2929887..2931038) Escherichia coli K12 947273 NP_417280.1 CDS fucA NC_000913.2 2931063 2931710 R GO_process: carbohydrate catabolic process [goid 0016052]; L-fuculose-1-phosphate aldolase complement(2931063..2931710) Escherichia coli K12 947282 NP_417281.1 CDS fucP NC_000913.2 2932257 2933573 D fucose permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; L-fucose transporter 2932257..2933573 Escherichia coli K12 947487 NP_417282.1 CDS fucI NC_000913.2 2933606 2935381 D GO_process: carbohydrate catabolic process [goid 0016052]; L-fucose isomerase 2933606..2935381 Escherichia coli K12 946195 NP_417283.1 CDS fucK NC_000913.2 2935460 2936908 D GO_process: carbohydrate catabolic process [goid 0016052]; L-fuculokinase 2935460..2936908 Escherichia coli K12 946022 NP_417284.1 CDS fucU NC_000913.2 2936910 2937332 D protein of fucose operon; L-fucose mutarotase 2936910..2937332 Escherichia coli K12 945842 NP_417285.1 CDS fucR NC_000913.2 2937390 2938121 D positive regulator of the fuc operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 2937390..2938121 Escherichia coli K12 946905 NP_417286.1 CDS ygdE NC_000913.2 2938165 2939265 R predicted methyltransferase complement(2938165..2939265) Escherichia coli K12 947283 NP_417287.1 CDS ygdD NC_000913.2 2939258 2939653 R conserved inner membrane protein complement(2939258..2939653) Escherichia coli K12 947279 NP_417288.1 CDS gcvA NC_000913.2 2939672 2940589 R positive regulator of gcv operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(2939672..2940589) Escherichia coli K12 947278 NP_417289.2 CDS ygdI NC_000913.2 2940940 2941167 R predicted protein complement(2940940..2941167) Escherichia coli K12 947276 NP_417290.1 CDS csdA NC_000913.2 2941359 2942564 D GO_process: sulfur metabolic process [goid 0006790]; GO_process: amino acid metabolic process [goid 0006520]; cysteine sulfinate desulfinase 2941359..2942564 Escherichia coli K12 947275 NP_417291.1 CDS csdE NC_000913.2 2942564 2943007 D predicted Fe-S metabolism protein 2942564..2943007 Escherichia coli K12 947274 NP_417292.1 CDS ygdL NC_000913.2 2943058 2943864 R putative enzyme; conserved protein complement(2943058..2943864) Escherichia coli K12 947291 NP_417293.1 CDS mltA NC_000913.2 2944103 2945200 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; membrane-bound lytic murein transglycosylase A complement(2944103..2945200) Escherichia coli K12 944964 NP_417294.4 CDS amiC NC_000913.2 2945779 2947032 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylmuramoyl-L-alanine amidase complement(2945779..2947032) Escherichia coli K12 947293 NP_417295.1 CDS argA NC_000913.2 2947264 2948595 D N-acetylglutamate synthase; amino acid acetyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase 2947264..2948595 Escherichia coli K12 947289 NP_417296.1 CDS recD NC_000913.2 2948657 2950483 R DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA recombination [goid 0006310]; exonuclease V (RecBCD complex), alpha chain complement(2948657..2950483) Escherichia coli K12 947287 NP_417297.1 CDS recB NC_000913.2 2950483 2954025 R DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA recombination [goid 0006310]; exonuclease V (RecBCD complex), beta subunit complement(2950483..2954025) Escherichia coli K12 947286 NP_417298.1 CDS ptrA NC_000913.2 2954018 2956906 R protease III complement(2954018..2956906) Escherichia coli K12 947284 NP_417299.1 CDS recC NC_000913.2 2957082 2960450 R DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA recombination [goid 0006310]; exonuclease V (RecBCD complex), gamma chain complement(2957082..2960450) Escherichia coli K12 947294 NP_417300.1 CDS ppdC NC_000913.2 2960463 2960786 R prepilin peptidase dependent protein C; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; predicted protein complement(2960463..2960786) Escherichia coli K12 945797 NP_417301.4 CDS ygdB NC_000913.2 2960771 2961178 R predicted protein complement(2960771..2961178) Escherichia coli K12 944763 NP_417302.1 CDS ppdB NC_000913.2 2961175 2961738 R prepilin peptidase dependent protein B; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; conserved protein complement(2961175..2961738) Escherichia coli K12 948985 NP_417303.1 CDS ppdA NC_000913.2 2961729 2962199 R prepilin peptidase dependent protein A; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; conserved protein complement(2961729..2962199) Escherichia coli K12 945393 NP_417304.1 CDS thyA NC_000913.2 2962383 2963177 R GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidylate synthetase complement(2962383..2963177) Escherichia coli K12 949035 NP_417305.1 CDS lgt NC_000913.2 2963184 2964059 R phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; GO_process: protein modification [goid 0006464]; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase complement(2963184..2964059) Escherichia coli K12 947303 NP_417306.1 CDS ptsP NC_000913.2 2964210 2966456 R PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins); GO_process: carbohydrate catabolic process [goid 0016052]; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein complement(2964210..2966456) Escherichia coli K12 947301 NP_417307.1 CDS nudH NC_000913.2 2966469 2966999 R putative invasion protein; nucleotide hydrolase complement(2966469..2966999) Escherichia coli K12 947300 YP_001165326.1 CDS ygdT NC_000913.2 2967352 2967498 R hypothetical protein complement(2967352..2967498) Escherichia coli K12 5061519 NP_417308.1 CDS mutH NC_000913.2 2967684 2968373 D methyl-directed mismatch repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; methyl-directed mismatch repair protein 2967684..2968373 Escherichia coli K12 947299 NP_417309.1 CDS ygdQ NC_000913.2 2968442 2969155 D putative transport protein; predicted inner membrane protein 2968442..2969155 Escherichia coli K12 947295 NP_417310.1 CDS ygdR NC_000913.2 2969293 2969511 D predicted protein 2969293..2969511 Escherichia coli K12 947304 NP_417311.1 CDS tas NC_000913.2 2969619 2970659 D predicted oxidoreductase, NADP(H)-dependent aldo-keto reductase 2969619..2970659 Escherichia coli K12 947306 NP_417312.1 CDS lplT NC_000913.2 2970691 2971884 R putative resistance proteins; GO_process: response to drug [goid 0042493]; predicted inner membrane protein complement(2970691..2971884) Escherichia coli K12 947317 NP_417313.1 CDS aas NC_000913.2 2971877 2974036 R 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase complement(2971877..2974036) Escherichia coli K12 947315 NP_417314.1 CDS galR NC_000913.2 2974621 2975652 D repressor of galETK operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 2974621..2975652 Escherichia coli K12 947314 NP_417315.1 CDS lysA NC_000913.2 2975659 2976921 R diaminopimelate decarboxylase; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; diaminopimelate decarboxylase, PLP-binding complement(2975659..2976921) Escherichia coli K12 947313 NP_417316.1 CDS lysR NC_000913.2 2977043 2977978 D positive regulator for lys; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 2977043..2977978 Escherichia coli K12 947311 NP_417317.1 CDS ygeA NC_000913.2 2977965 2978657 R putative resistance proteins; GO_process: response to drug [goid 0042493]; predicted racemase complement(2977965..2978657) Escherichia coli K12 947348 NP_417318.1 CDS araE NC_000913.2 2978786 2980204 R low-affinity L-arabinose transport system proton symport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity [goid 0015524]; GO_process: carbohydrate catabolic process [goid 0016052]; arabinose transporter complement(2978786..2980204) Escherichia coli K12 947341 NP_417319.1 CDS kduD NC_000913.2 2980519 2981280 R 2-deoxy-D-gluconate 3-dehydrogenase complement(2980519..2981280) Escherichia coli K12 947323 NP_417320.1 CDS kduI NC_000913.2 2981310 2982146 R homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase; GO_process: carbohydrate catabolic process [goid 0016052]; predicted 5-keto 4-deoxyuronate isomerase complement(2981310..2982146) Escherichia coli K12 947319 NP_417321.2 CDS yqeF NC_000913.2 2982433 2983614 R putative acyltransferase; predicted acyltransferase complement(2982433..2983614) Escherichia coli K12 947324 NP_417322.1 CDS yqeG NC_000913.2 2983869 2985098 D putative transporter protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2983869..2985098 Escherichia coli K12 945028 NP_417323.2 CDS yqeH NC_000913.2 2985558 2986190 D conserved protein with bipartite regulator domain 2985558..2986190 Escherichia coli K12 945263 NP_417324.1 CDS yqeI NC_000913.2 2986524 2987333 D putative sensory transducer; predicted transcriptional regulator 2986524..2987333 Escherichia coli K12 947327 NP_417325.4 CDS yqeJ NC_000913.2 2987326 2987808 D predicted protein 2987326..2987808 Escherichia coli K12 947328 NP_417326.2 CDS yqeK NC_000913.2 2987957 2988382 R predicted protein complement(2987957..2988382) Escherichia coli K12 947329 b2850 CDS ygeF NC_000913.2 2988576 2989065 D predicted protein; join(2988576..2988971,2988970..2989065) Escherichia coli K12 946823 NP_417328.1 CDS ygeG NC_000913.2 2989290 2989781 D predicted chaperone 2989290..2989781 Escherichia coli K12 946986 NP_417329.1 CDS ygeH NC_000913.2 2990116 2991492 D putative invasion protein; predictedtranscriptional regulator 2990116..2991492 Escherichia coli K12 946265 NP_417330.1 CDS ygeI NC_000913.2 2991660 2991878 D predicted protein 2991660..2991878 Escherichia coli K12 947336 b2854 CDS pbl NC_000913.2 2991961 2992463 D predicted peptidoglycan-binding enzyme (pseudogene); join(2991961..2992404,2992404..2992463) Escherichia coli K12 947338 b2856 CDS ygeK NC_000913.2 2992482 2993114 R predicted protein putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; complement(2992482..2993114) Escherichia coli K12 947332 b2858 CDS ygeN NC_000913.2 2993336 2994042 R predicted protein (pseudogene); complement(join(2993336..2993782,2993782..2994042)) Escherichia coli K12 2847705 b2859 CDS ygeO NC_000913.2 2993984 2994382 R pseudogene; complement(2993984..2994382) Escherichia coli K12 947325 NP_417337.1 CDS insD NC_000913.2 2994394 2995299 R KpLE2 phage-like element; IS2 insertion element transposase InsAB' complement(2994394..2995299) Escherichia coli K12 947346 NP_417338.3 CDS insC NC_000913.2 2995257 2995622 R KpLE2 phage-like element; IS2 insertion element repressor InsA complement(2995257..2995622) Escherichia coli K12 947347 b2863 CDS ygeQ NC_000913.2 2995714 2996850 R predicted protein; complement(2995714..2996850) Escherichia coli K12 947344 NP_417341.4 CDS ygeR NC_000913.2 2997158 2997913 R putative lipoprotein; GO_component: cell outer membrane [goid 0009279]; tetratricopeptide repeat transcriptional regulator complement(2997158..2997913) Escherichia coli K12 947352 NP_417342.1 CDS xdhA NC_000913.2 2998367 3000625 D xanthine dehydrogenase, molybdenum binding subunit 2998367..3000625 Escherichia coli K12 947116 NP_417343.1 CDS xdhB NC_000913.2 3000636 3001514 D xanthine dehydrogenase, FAD-binding subunit 3000636..3001514 Escherichia coli K12 947205 NP_417344.1 CDS xdhC NC_000913.2 3001511 3001990 D xanthine dehydrogenase, Fe-S binding subunit 3001511..3001990 Escherichia coli K12 945148 NP_417345.1 CDS ygeV NC_000913.2 3002030 3003808 R putative transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(3002030..3003808) Escherichia coli K12 947320 YP_026185.1 CDS ygeW NC_000913.2 3004284 3005474 D putative carbamoyl transferase; conserved protein 3004284..3005474 Escherichia coli K12 945826 NP_417347.1 CDS ygeX NC_000913.2 3005532 3006728 D putative diaminopropionate ammonia-lyase; 2,3-diaminopropionate ammonia-lyase 3005532..3006728 Escherichia coli K12 947012 NP_417348.1 CDS ygeY NC_000913.2 3006786 3007997 D putative deacetylase; predicted peptidase 3006786..3007997 Escherichia coli K12 947360 NP_417349.4 CDS hyuA NC_000913.2 3008050 3009435 D D-stereospecific phenylhydantoinase 3008050..3009435 Escherichia coli K12 947359 NP_417350.1 CDS yqeA NC_000913.2 3009483 3010415 D putative kinase; predicted amino acid kinase 3009483..3010415 Escherichia coli K12 947358 NP_417351.1 CDS yqeB NC_000913.2 3010636 3012261 R putative synthases; conserved protein with NAD(P)-binding Rossman fold complement(3010636..3012261) Escherichia coli K12 947357 NP_417352.2 CDS yqeC NC_000913.2 3012309 3013079 R conserved protein complement(3012309..3013079) Escherichia coli K12 947350 NP_417353.1 CDS ygfJ NC_000913.2 3013182 3013760 D conserved protein 3013182..3013760 Escherichia coli K12 947356 NP_417354.1 CDS ygfK NC_000913.2 3014082 3017180 D putative oxidoreductase, Fe-S subunit; predicted oxidoreductase, Fe-S subunit 3014082..3017180 Escherichia coli K12 949068 NP_417355.4 CDS ssnA NC_000913.2 3017183 3018511 D GO_process: cell cycle [goid 0007049]; predicted chlorohydrolase/aminohydrolase 3017183..3018511 Escherichia coli K12 949072 NP_417356.1 CDS ygfM NC_000913.2 3018562 3019341 D predicted oxidoreductase 3018562..3019341 Escherichia coli K12 949071 NP_417357.1 CDS xdhD NC_000913.2 3019338 3022208 D fused predicted xanthine/hypoxanthine oxidase: molybdopterin-binding subunit/Fe-S binding subunit 3019338..3022208 Escherichia coli K12 949079 NP_417358.2 CDS ygfO NC_000913.2 3022373 3023773 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; predicted transporter 3022373..3023773 Escherichia coli K12 949075 NP_417359.1 CDS guaD NC_000913.2 3023788 3025107 D guanine deaminase 3023788..3025107 Escherichia coli K12 947366 YP_026186.1 CDS ygfQ NC_000913.2 3025143 3026510 D predicted transporter 3025143..3026510 Escherichia coli K12 2847748 NP_417362.4 CDS ygfS NC_000913.2 3026546 3027034 R putative oxidoreductase, Fe-S subunit; predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit complement(3026546..3027034) Escherichia coli K12 949016 NP_417363.2 CDS ygfT NC_000913.2 3027034 3028953 R putative oxidoreductase, Fe-S subunit; fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit complement(3027034..3028953) Escherichia coli K12 949018 NP_417364.2 CDS ygfU NC_000913.2 3029389 3030837 D putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3029389..3030837 Escherichia coli K12 949017 NP_417365.1 CDS idi NC_000913.2 3031087 3031635 D GO_component: cytoplasm [goid 0005737]; isopentenyl diphosphate isomerase 3031087..3031635 Escherichia coli K12 949020 NP_417366.1 CDS lysS NC_000913.2 3031679 3033196 R lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; lysine tRNA synthetase, constitutive complement(3031679..3033196) Escherichia coli K12 947372 NP_417367.1 CDS prfB NC_000913.2 3033206 3034304 R an in-frame premature UGA termination codon is located within the prfB sequence, and a naturally occuring +1 frameshift is required for synthesis of RF-2; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; peptide chain release factor RF-2 complement(join(3033206..3034228,3034230..3034304)) Escherichia coli K12 947369 NP_417368.1 CDS recJ NC_000913.2 3034395 3036128 R ssDNA exonuclease, 5' --> 3' specific; GO_process: DNA catabolic process [goid 0006308]; ssDNA exonuclease, 5' --> 3'-specific complement(3034395..3036128) Escherichia coli K12 947367 NP_417369.1 CDS dsbC NC_000913.2 3036134 3036844 R GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; protein disulfide isomerase II complement(3036134..3036844) Escherichia coli K12 947363 NP_417370.1 CDS xerD NC_000913.2 3036869 3037765 R GO_process: DNA recombination [goid 0006310]; site-specific tyrosine recombinase complement(3036869..3037765) Escherichia coli K12 947362 NP_417371.1 CDS fldB NC_000913.2 3037877 3038398 D GO_function: electron carrier activity [goid 0009055]; GO_process: aerobic respiration [goid 0009060]; flavodoxin 2 3037877..3038398 Escherichia coli K12 947361 NP_417372.1 CDS ygfX NC_000913.2 3038438 3038845 R predicted protein complement(3038438..3038845) Escherichia coli K12 947379 NP_417373.1 CDS ygfY NC_000913.2 3038826 3039092 R conserved protein complement(3038826..3039092) Escherichia coli K12 947382 NP_417374.1 CDS ygfZ NC_000913.2 3039335 3040315 D predicted folate-dependent regulatory protein 3039335..3040315 Escherichia coli K12 947384 NP_417375.1 CDS yqfA NC_000913.2 3040511 3041170 R putative oxidoreductase; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted oxidoreductase, inner membrane subunit complement(3040511..3041170) Escherichia coli K12 947381 NP_417376.1 CDS yqfB NC_000913.2 3041334 3041645 R conserved protein complement(3041334..3041645) Escherichia coli K12 947380 NP_417377.1 CDS bglA NC_000913.2 3041684 3043123 D 6-phospho-beta-glucosidase A; cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; 6-phospho-beta-glucosidase A 3041684..3043123 Escherichia coli K12 947378 NP_417378.1 CDS ygfF NC_000913.2 3043180 3043923 R putative oxidoreductase; predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(3043180..3043923) Escherichia coli K12 947373 NP_417379.1 CDS gcvP NC_000913.2 3044190 3047063 R glycine decarboxylase, P protein of glycine cleavage system; GO_process: amino acid catabolic process [goid 0009063]; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex complement(3044190..3047063) Escherichia coli K12 947394 NP_417380.1 CDS gcvH NC_000913.2 3047182 3047571 R in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor; GO_process: amino acid catabolic process [goid 0009063]; glycine cleavage complex lipoylprotein complement(3047182..3047571) Escherichia coli K12 947393 NP_417381.1 CDS gcvT NC_000913.2 3047595 3048689 R aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system; GO_process: amino acid catabolic process [goid 0009063]; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex complement(3047595..3048689) Escherichia coli K12 947390 NP_417382.1 CDS visC NC_000913.2 3049137 3050339 R predicted oxidoreductase with FAD/NAD(P)-binding domain complement(3049137..3050339) Escherichia coli K12 947389 NP_417383.1 CDS ubiH NC_000913.2 3050362 3051540 R 2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone; GO_process: aerobic respiration [goid 0009060]; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding complement(3050362..3051540) Escherichia coli K12 947388 NP_417384.1 CDS pepP NC_000913.2 3051537 3052862 R proline aminopeptidase P II complement(3051537..3052862) Escherichia coli K12 947385 NP_417385.4 CDS ygfB NC_000913.2 3052888 3053466 R predicted protein complement(3052888..3053466) Escherichia coli K12 947400 NP_417386.1 CDS zapA NC_000913.2 3053634 3053963 D protein that localizes to the cytokinetic ring 3053634..3053963 Escherichia coli K12 947404 NP_417387.3 CDS ygfA NC_000913.2 3054263 3054811 D putative ligase; predicted ligase 3054263..3054811 Escherichia coli K12 945167 NP_417388.1 CDS serA NC_000913.2 3055200 3056432 R GO_component: cytoplasm [goid 0005737]; GO_process: L-serine biosynthetic process [goid 0006564]; D-3-phosphoglycerate dehydrogenase complement(3055200..3056432) Escherichia coli K12 945258 NP_417389.1 CDS rpiA NC_000913.2 3056688 3057347 R ribosephosphate isomerase, constitutive; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; ribose 5-phosphate isomerase, constitutive complement(3056688..3057347) Escherichia coli K12 947407 b2915 CDS yqfE NC_000913.2 3057403 3057723 R pseudogene; complement(3057403..3057723) Escherichia coli K12 946707 NP_417391.1 CDS argP NC_000913.2 3057775 3058668 D replication initiation inhibitor, binds to 13-mers at oriC; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, replication initiation inhibitor 3057775..3058668 Escherichia coli K12 944867 NP_417392.1 CDS scpA NC_000913.2 3058872 3061016 D methylmalonyl-CoA mutase (MCM); GO_process: fatty acid oxidation [goid 0019395]; methylmalonyl-CoA mutase 3058872..3061016 Escherichia coli K12 945576 NP_417393.1 CDS argK NC_000913.2 3061009 3062004 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane ATPase/protein kinase 3061009..3062004 Escherichia coli K12 947412 NP_417394.4 CDS scpB NC_000913.2 3062015 3062800 D putative enzyme; methylmalonyl-CoA decarboxylase, biotin-independent 3062015..3062800 Escherichia coli K12 947408 NP_417395.1 CDS scpC NC_000913.2 3062824 3064302 D putative coenzyme A transferase; propionyl-CoA:succinate-CoA transferase 3062824..3064302 Escherichia coli K12 947402 NP_417396.4 CDS ygfI NC_000913.2 3064299 3065195 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(3064299..3065195) Escherichia coli K12 947401 NP_417397.1 CDS yggE NC_000913.2 3065362 3066102 R putative actin; conserved protein complement(3065362..3066102) Escherichia coli K12 947398 NP_417398.1 CDS argO NC_000913.2 3066195 3066830 R arginine transporter complement(3066195..3066830) Escherichia coli K12 947418 NP_417399.1 CDS mscS NC_000913.2 3066969 3067829 R mechanosensitive channel complement(3066969..3067829) Escherichia coli K12 947416 NP_417400.1 CDS fbaA NC_000913.2 3068187 3069266 R GO_process: carbohydrate catabolic process [goid 0016052]; fructose-bisphosphate aldolase, class II complement(3068187..3069266) Escherichia coli K12 947415 NP_417401.1 CDS pgk NC_000913.2 3069481 3070644 R GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; phosphoglycerate kinase complement(3069481..3070644) Escherichia coli K12 947414 NP_417402.1 CDS epd NC_000913.2 3070694 3071713 R GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: gluconeogenesis [goid 0006094]; D-erythrose 4-phosphate dehydrogenase complement(3070694..3071713) Escherichia coli K12 947413 NP_417403.1 CDS yggC NC_000913.2 3071998 3072711 R putative kinase; conserved protein with nucleoside triphosphate hydrolase domain complement(3071998..3072711) Escherichia coli K12 947419 NP_417404.1 CDS yggD NC_000913.2 3072708 3073217 R putative transcriptional regulator; predicted DNA-binding transcriptional regulator complement(3072708..3073217) Escherichia coli K12 946861 NP_417405.1 CDS yggF NC_000913.2 3073239 3074204 R predicted hexoseP phosphatase complement(3073239..3074204) Escherichia coli K12 947410 YP_026187.1 CDS yggP NC_000913.2 3074201 3075478 R predicted dehydrogenase complement(3074201..3075478) Escherichia coli K12 2847686 NP_417408.1 CDS cmtA NC_000913.2 3075493 3076881 R PTS system, mannitol-specific enzyme II component, cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; predicted fused mannitol-specific PTS enzymes: IIB component/IIC component complement(3075493..3076881) Escherichia coli K12 945256 NP_417409.1 CDS cmtB NC_000913.2 3076909 3077352 R PTS system, mannitol-specific enzyme II component, cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; predicted mannitol-specific enzyme IIA component of PTS complement(3076909..3077352) Escherichia coli K12 945125 YP_026188.1 CDS tktA NC_000913.2 3077666 3079657 R transketolase 1 isozyme; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; transketolase 1, thiamin-binding complement(3077666..3079657) Escherichia coli K12 947420 NP_417411.2 CDS yggG NC_000913.2 3079935 3080693 D predicted peptidase 3079935..3080693 Escherichia coli K12 945173 NP_417412.1 CDS speB NC_000913.2 3080899 3081819 R GO_process: polyamine biosynthetic process [goid 0006596]; agmatinase complement(3080899..3081819) Escherichia coli K12 947715 NP_417413.1 CDS speA NC_000913.2 3081957 3083933 R biosynthetic arginine decarboxylase; GO_component: periplasmic space [goid 0042597]; GO_process: polyamine biosynthetic process [goid 0006596]; biosynthetic arginine decarboxylase, PLP-binding complement(3081957..3083933) Escherichia coli K12 947432 NP_417414.2 CDS yqgB NC_000913.2 3083942 3084073 R predicted protein complement(3083942..3084073) Escherichia coli K12 947433 NP_417415.1 CDS yqgC NC_000913.2 3084209 3084424 D predicted protein 3084209..3084424 Escherichia coli K12 945052 NP_417416.1 CDS yqgD NC_000913.2 3084421 3084672 R predicted inner membrane protein complement(3084421..3084672) Escherichia coli K12 945430 NP_417417.1 CDS metK NC_000913.2 3084728 3085882 D methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes; GO_component: cytoplasm [goid 0005737]; GO_process: S-adenosylmethionine biosynthetic process [goid 0006556]; methionine adenosyltransferase 1 3084728..3085882 Escherichia coli K12 945389 NP_417418.1 CDS galP NC_000913.2 3086306 3087700 D galactose-proton symport of transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-galactose transporter 3086306..3087700 Escherichia coli K12 947434 NP_417419.1 CDS yggI NC_000913.2 3087777 3088274 D conserved protein 3087777..3088274 Escherichia coli K12 947443 NP_417420.1 CDS endA NC_000913.2 3088369 3089076 D GO_process: DNA catabolic process [goid 0006308]; DNA-specific endonuclease I 3088369..3089076 Escherichia coli K12 949092 NP_417421.4 CDS rsmE NC_000913.2 3089156 3089887 D predicted protein 3089156..3089887 Escherichia coli K12 945816 NP_417422.1 CDS gshB NC_000913.2 3089900 3090850 D GO_process: glutathione biosynthetic process [goid 0006750]; glutathione synthetase 3089900..3090850 Escherichia coli K12 947445 NP_417423.4 CDS yqgE NC_000913.2 3090959 3091522 D predicted protein 3090959..3091522 Escherichia coli K12 947442 NP_417424.1 CDS yqgF NC_000913.2 3091522 3091938 D predicted Holliday junction resolvase 3091522..3091938 Escherichia coli K12 947439 NP_417425.2 CDS yggR NC_000913.2 3092122 3093102 R putative protein transport; predicted transporter complement(3092122..3093102) Escherichia coli K12 947430 NP_417426.1 CDS yggS NC_000913.2 3093120 3093824 D predicted enzyme 3093120..3093824 Escherichia coli K12 947423 NP_417427.1 CDS yggT NC_000913.2 3093842 3094408 D conserved hypothetical integral membrane protein; predicted inner membrane protein 3093842..3094408 Escherichia coli K12 947421 NP_417428.2 CDS yggU NC_000913.2 3094405 3094695 D conserved protein 3094405..3094695 Escherichia coli K12 947424 NP_417429.1 CDS rdgB NC_000913.2 3094703 3095296 D putative ribosomal protein; dITP/XTP pyrophosphatase 3094703..3095296 Escherichia coli K12 947429 NP_417430.1 CDS yggW NC_000913.2 3095289 3096425 D putative oxidase; predicted oxidoreductase 3095289..3096425 Escherichia coli K12 947446 NP_417431.1 CDS yggM NC_000913.2 3096580 3097587 R putative alpha helix chain; conserved protein complement(3096580..3097587) Escherichia coli K12 947455 NP_417432.1 CDS ansB NC_000913.2 3097704 3098750 R GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; periplasmic L-asparaginase II complement(3097704..3098750) Escherichia coli K12 947454 NP_417433.1 CDS yggN NC_000913.2 3098926 3099645 R predicted protein complement(3098926..3099645) Escherichia coli K12 947453 NP_417434.4 CDS yggL NC_000913.2 3099829 3100155 R predicted protein complement(3099829..3100155) Escherichia coli K12 947449 NP_417435.1 CDS trmI NC_000913.2 3100155 3100874 R tRNA (m7G46) methyltransferase, SAM-dependent complement(3100155..3100874) Escherichia coli K12 947448 NP_417436.1 CDS mutY NC_000913.2 3101035 3102087 D adenine glycosylase; G.C --> T.A transversions; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; adenine DNA glycosylase 3101035..3102087 Escherichia coli K12 947447 NP_417437.1 CDS yggX NC_000913.2 3102115 3102390 D protein that protects iron-sulfur proteins against oxidative damage 3102115..3102390 Escherichia coli K12 947461 NP_417438.2 CDS mltC NC_000913.2 3102455 3103534 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; membrane-bound lytic murein transglycosylase C 3102455..3103534 Escherichia coli K12 945428 NP_417439.4 CDS nupG NC_000913.2 3103736 3104992 D transport of nucleosides, permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; nucleoside transporter 3103736..3104992 Escherichia coli K12 946282 NP_417440.4 CDS speC NC_000913.2 3105042 3107177 R ornithine decarboxylase isozyme; GO_process: polyamine biosynthetic process [goid 0006596]; ornithine decarboxylase, constitutive complement(3105042..3107177) Escherichia coli K12 947457 NP_417441.1 CDS yqgA NC_000913.2 3107575 3108282 D putative transport protein; predicted inner membrane protein 3107575..3108282 Escherichia coli K12 947462 NP_417442.1 CDS yghD NC_000913.2 3108612 3109148 R putative secretion pathway protein; predicted secretion pathway M-type protein, membrane anchored complement(3108612..3109148) Escherichia coli K12 947025 b2969 CDS yghE NC_000913.2 3109150 3110112 R pseudogene, predicted secretion pathway protein, L-type protein putative general secretion pathway for protein export (GSP); complement(3109150..3110112) Escherichia coli K12 945897 b2970 CDS yghF NC_000913.2 3110115 3110942 R predicted secretion pathway protein, C-type protein;putative transport; Not classified putative general secretion pathway for protein export (GSP); complement(3110115..3110942) Escherichia coli K12 947469 NP_417445.1 CDS yghG NC_000913.2 3111089 3111499 R predicted protein complement(3111089..3111499) Escherichia coli K12 947470 NP_417446.4 CDS pppA NC_000913.2 3111565 3112374 R bifunctional prepilin leader peptidase/ methylase complement(3111565..3112374) Escherichia coli K12 947467 YP_026189.1 CDS yghJ NC_000913.2 3112572 3117134 R putative lipoprotein; predicted inner membrane lipoprotein complement(3112572..3117134) Escherichia coli K12 2847716 NP_417449.1 CDS glcA NC_000913.2 3117619 3119301 R putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; glycolate transporter complement(3117619..3119301) Escherichia coli K12 947259 NP_417450.1 CDS glcB NC_000913.2 3119656 3121827 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glyoxylate catabolic process [goid 0009436]; malate synthase G complement(3119656..3121827) Escherichia coli K12 948857 NP_417451.1 CDS glcG NC_000913.2 3121849 3122253 R conserved protein complement(3121849..3122253) Escherichia coli K12 947473 YP_026190.1 CDS glcF NC_000913.2 3122258 3123481 R glycolate oxidase iron-sulfur subunit complement(3122258..3123481) Escherichia coli K12 2847717 YP_026191.1 CDS glcE NC_000913.2 3123492 3124544 R glycolate oxidase iron-sulfur subunit; glycolate oxidase FAD binding subunit complement(3123492..3124544) Escherichia coli K12 2847718 NP_417453.1 CDS glcD NC_000913.2 3124544 3126043 R glycolate oxidase subunit D; GO_process: carbohydrate catabolic process [goid 0016052]; glycolate oxidase subunit, FAD-linked complement(3124544..3126043) Escherichia coli K12 947353 NP_417454.1 CDS glcC NC_000913.2 3126294 3127058 D transcriptional activator for glc operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, glycolate-binding 3126294..3127058 Escherichia coli K12 947466 b2981 CDS yghO NC_000913.2 3127065 3128165 R pseudogene, predicted DNA-binding transcriptional regulator; complement(3127065..3128165) Escherichia coli K12 947701 NP_417456.1 CDS insH NC_000913.2 3128200 3129216 D IS5 transposase and trans-activator 3128200..3129216 Escherichia coli K12 947516 YP_026192.1 CDS yghQ NC_000913.2 3129363 3130430 R predicted inner membrane protein complement(3129363..3130430) Escherichia coli K12 947716 NP_417458.1 CDS yghR NC_000913.2 3130476 3131234 R predicted protein with nucleoside triphosphate hydrolase domain complement(3130476..3131234) Escherichia coli K12 947310 NP_417459.1 CDS yghS NC_000913.2 3131266 3131979 R predicted protein with nucleoside triphosphate hydrolase domain complement(3131266..3131979) Escherichia coli K12 947476 NP_417460.1 CDS yghT NC_000913.2 3132153 3132845 D predicted protein with nucleoside triphosphate hydrolase domain 3132153..3132845 Escherichia coli K12 947477 NP_417461.1 CDS pitB NC_000913.2 3132894 3134393 R low-affinity phosphate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter complement(3132894..3134393) Escherichia coli K12 947475 NP_417462.1 CDS gsp NC_000913.2 3134685 3136544 R glutathionylspermidine synthetase/amidase; GO_process: polyamine biosynthetic process [goid 0006596]; fused glutathionylspermidine amidase/glutathionylspermidine synthetase complement(3134685..3136544) Escherichia coli K12 947474 NP_417463.4 CDS yghU NC_000913.2 3136749 3137615 D predicted S-transferase 3136749..3137615 Escherichia coli K12 947472 NP_417464.1 CDS hybG NC_000913.2 3137738 3137986 R hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; hydrogenase 2 accessory protein complement(3137738..3137986) Escherichia coli K12 948020 NP_417465.1 CDS hybF NC_000913.2 3137999 3138340 R may modulate levels of hydrogenease-2; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved with the maturation of hydrogenases 1 and 2 complement(3137999..3138340) Escherichia coli K12 948004 NP_417466.1 CDS hybE NC_000913.2 3138333 3138821 R member of hyb operon; hydrogenase 2-specific chaperone complement(3138333..3138821) Escherichia coli K12 947483 NP_417467.1 CDS hybD NC_000913.2 3138814 3139308 R probable processing element for hydrogenase-2; GO_process: anaerobic respiration [goid 0009061]; predicted maturation element for hydrogenase 2 complement(3138814..3139308) Escherichia coli K12 948982 NP_417468.1 CDS hybC NC_000913.2 3139308 3141011 R probable large subunit, hydrogenase-2; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 2, large subunit complement(3139308..3141011) Escherichia coli K12 945182 NP_417469.1 CDS hybB NC_000913.2 3141008 3142186 R probable cytochrome Ni/Fe component of hydrogenase-2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; predicted hydrogenase 2 cytochrome b type component complement(3141008..3142186) Escherichia coli K12 948615 NP_417470.1 CDS hybA NC_000913.2 3142176 3143162 R hydrogenase-2 small subunit; hydrogenase 2 4Fe-4S ferredoxin-type component complement(3142176..3143162) Escherichia coli K12 944842 NP_417471.1 CDS hybO NC_000913.2 3143165 3144283 R GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; hydrogenase 2, small subunit complement(3143165..3144283) Escherichia coli K12 945902 NP_417472.1 CDS yghW NC_000913.2 3144472 3144759 R predicted protein complement(3144472..3144759) Escherichia coli K12 947485 b4658 CDS yghX NC_000913.2 3144878 3145713 R predicted dienlactone hydrolase (pseudogene); complement(join(3144878..3145294,3145294..3145713)) Escherichia coli K12 2847694 NP_417474.1 CDS yghZ NC_000913.2 3145919 3146959 D putative reductase; GO_function: voltage-gated ion channel activity [goid 0005244]; aldo-keto reductase 3145919..3146959 Escherichia coli K12 947480 NP_417475.1 CDS yqhA NC_000913.2 3146999 3147493 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(3146999..3147493) Escherichia coli K12 947479 NP_417476.1 CDS yghA NC_000913.2 3147684 3148568 D putative oxidoreductase; predicted glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain 3147684..3148568 Escherichia coli K12 947478 NP_417478.1 CDS exbD NC_000913.2 3148840 3149265 R uptake of enterochelin; tonB-dependent uptake of B colicins; GO_process: iron ion transport [goid 0006826]; membrane spanning protein in TonB-ExbB-ExbD complex complement(3148840..3149265) Escherichia coli K12 946345 NP_417479.1 CDS exbB NC_000913.2 3149272 3150006 R uptake of enterochelin; tonB-dependent uptake of B colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; membrane spanning protein in TonB-ExbB-ExbD complex complement(3149272..3150006) Escherichia coli K12 945420 NP_417481.1 CDS metC NC_000913.2 3150258 3151445 D cystathionine beta-lyase (beta-cystathionase); GO_component: cytoplasm [goid 0005737]; GO_process: methionine biosynthetic process [goid 0009086]; cystathionine beta-lyase, PLP-dependent 3150258..3151445 Escherichia coli K12 946240 NP_417482.1 CDS yghB NC_000913.2 3151585 3152244 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3151585..3152244 Escherichia coli K12 947490 NP_417483.2 CDS yqhC NC_000913.2 3152284 3153240 R putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(3152284..3153240) Escherichia coli K12 947491 NP_417484.1 CDS yqhD NC_000913.2 3153377 3154540 D putative oxidoreductase; alcohol dehydrogenase, NAD(P)-dependent 3153377..3154540 Escherichia coli K12 947493 NP_417485.4 CDS dkgA NC_000913.2 3154645 3155472 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 2,5-diketo-D-gluconate reductase A 3154645..3155472 Escherichia coli K12 947495 YP_026195.1 CDS yqhG NC_000913.2 3155672 3156598 D conserved protein 3155672..3156598 Escherichia coli K12 945919 NP_417487.1 CDS yqhH NC_000913.2 3156649 3156906 D GO_component: cell outer membrane [goid 0009279]; predicted outer membrane lipoprotein 3156649..3156906 Escherichia coli K12 946832 YP_026196.1 CDS ygiQ NC_000913.2 3156949 3159168 R conserved protein complement(3156949..3159168) Escherichia coli K12 948963 NP_417489.1 CDS sufI NC_000913.2 3159279 3160691 R suppressor of ftsI; repressor protein for FtsI complement(3159279..3160691) Escherichia coli K12 944982 NP_417490.1 CDS plsC NC_000913.2 3160766 3161503 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(3160766..3161503) Escherichia coli K12 947496 NP_417491.1 CDS parC NC_000913.2 3161737 3163995 R DNA topoisomerase IV subunit A; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA topoisomerase IV, subunit A complement(3161737..3163995) Escherichia coli K12 947499 NP_417492.1 CDS ygiS NC_000913.2 3164133 3165740 R putative transport periplasmic protein; GO_component: periplasmic space [goid 0042597]; predicted transporter subunit: periplasmic-binding component of ABC superfamily complement(3164133..3165740) Escherichia coli K12 947140 NP_417493.1 CDS ygiT NC_000913.2 3165873 3166268 R predicted DNA-binding transcriptional regulator complement(3165873..3166268) Escherichia coli K12 945814 NP_417494.1 CDS mqsR NC_000913.2 3166270 3166566 R predicted cyanide hydratase complement(3166270..3166566) Escherichia coli K12 947500 YP_026197.1 CDS ygiV NC_000913.2 3166771 3167253 R predicted transcriptional regulator complement(3166771..3167253) Escherichia coli K12 945805 NP_417496.1 CDS ygiW NC_000913.2 3167306 3167698 R conserved protein complement(3167306..3167698) Escherichia coli K12 946051 NP_417497.1 CDS qseB NC_000913.2 3167850 3168509 D putative 2-component transcriptional regulator; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-binding response regulator in two-component regulatory system with QseC 3167850..3168509 Escherichia coli K12 945369 NP_417498.1 CDS qseC NC_000913.2 3168506 3169855 D putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with QseB 3168506..3169855 Escherichia coli K12 947174 NP_417499.1 CDS ygiZ NC_000913.2 3169901 3170233 R conserved inner membrane protein complement(3169901..3170233) Escherichia coli K12 946450 NP_417500.1 CDS mdaB NC_000913.2 3170552 3171133 D modulator of drug activity B; GO_function: electron donor activity [goid 0009053]; GO_process: response to drug [goid 0042493]; NADPH quinone reductase 3170552..3171133 Escherichia coli K12 947512 NP_417501.1 CDS ygiN NC_000913.2 3171164 3171478 D quinol monooxygenase 3171164..3171478 Escherichia coli K12 947506 NP_417502.1 CDS parE NC_000913.2 3171526 3173418 R DNA topoisomerase IV subunit B; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA topoisomerase IV, subunit B complement(3171526..3173418) Escherichia coli K12 947501 NP_417503.1 CDS yqiA NC_000913.2 3173447 3174028 R predicted esterase complement(3173447..3174028) Escherichia coli K12 947488 NP_417504.1 CDS cpdA NC_000913.2 3174028 3174855 R GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: carbohydrate catabolic process [goid 0016052]; cyclic 3',5'-adenosine monophosphate phosphodiesterase complement(3174028..3174855) Escherichia coli K12 947515 NP_417505.1 CDS yqiB NC_000913.2 3174880 3175302 R putative enzyme; predicted dehydrogenase complement(3174880..3175302) Escherichia coli K12 947518 NP_417506.1 CDS nudF NC_000913.2 3175303 3175932 R ADP-ribose pyrophosphatase complement(3175303..3175932) Escherichia coli K12 947519 NP_417507.2 CDS tolC NC_000913.2 3176137 3177618 D outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; transport channel 3176137..3177618 Escherichia coli K12 947521 NP_417509.3 CDS ygiB NC_000913.2 3177766 3178437 D conserved outer membrane protein 3177766..3178437 Escherichia coli K12 945086 NP_417510.1 CDS ygiC NC_000913.2 3178443 3179603 D putative synthetase/amidase; predicted enzyme 3178443..3179603 Escherichia coli K12 947249 NP_417511.1 CDS ygiD NC_000913.2 3179641 3180456 R predicted dioxygenase complement(3179641..3180456) Escherichia coli K12 946447 NP_417512.1 CDS zupT NC_000913.2 3180572 3181345 D zinc transporter 3180572..3181345 Escherichia coli K12 947035 NP_417513.1 CDS ribB NC_000913.2 3181835 3182488 R 3,4 dihydroxy-2-butanone-4-phosphate synthase; 3,4-dihydroxy-2-butanone-4-phosphate synthase complement(3181835..3182488) Escherichia coli K12 947526 NP_417514.4 CDS yqiC NC_000913.2 3182862 3183152 D conserved protein 3182862..3183152 Escherichia coli K12 947524 NP_417515.1 CDS ygiL NC_000913.2 3183436 3183987 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 3183436..3183987 Escherichia coli K12 947522 b3046 CDS yqiG NC_000913.2 3184083 3187887 D predicted outer membrane usher protein;putative membrane; Not classified putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; join(3184083..3184111,3185443..3187887) Escherichia coli K12 947529 NP_417516.3 CDS insC NC_000913.2 3184209 3184574 D KpLE2 phage-like element; IS2 insertion element repressor InsA 3184209..3184574 Escherichia coli K12 947520 NP_417517.1 CDS insD NC_000913.2 3184532 3185437 D KpLE2 phage-like element; IS2 insertion element transposase InsAB' 3184532..3185437 Escherichia coli K12 947517 NP_417519.4 CDS yqiH NC_000913.2 3187903 3188652 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 3187903..3188652 Escherichia coli K12 947531 NP_417520.1 CDS yqiI NC_000913.2 3188654 3189718 D conserved protein 3188654..3189718 Escherichia coli K12 947535 NP_417521.1 CDS glgS NC_000913.2 3189761 3189961 R glycogen biosynthesis, rpoS dependent; GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; predicted glycogen synthesis protein complement(3189761..3189961) Escherichia coli K12 947533 NP_417522.1 CDS yqiJ NC_000913.2 3190230 3190859 D putative oxidoreductase; predicted inner membrane protein 3190230..3190859 Escherichia coli K12 947530 NP_417523.1 CDS yqiK NC_000913.2 3190886 3192547 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; conserved protein 3190886..3192547 Escherichia coli K12 947537 NP_417524.1 CDS rfaE NC_000913.2 3193342 3194775 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3193342..3194775) Escherichia coli K12 947548 NP_417525.1 CDS glnE NC_000913.2 3194823 3197663 R adenylylating enzyme for glutamine synthetase; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: protein modification [goid 0006464]; fused deadenylyltransferase/adenylyltransferase for glutamine synthetase complement(3194823..3197663) Escherichia coli K12 947552 NP_417526.1 CDS ygiF NC_000913.2 3197686 3198987 R predicted adenylate cyclase complement(3197686..3198987) Escherichia coli K12 947554 NP_417527.1 CDS htrG NC_000913.2 3199229 3199849 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted signal transduction protein (SH3 domain) 3199229..3199849 Escherichia coli K12 947555 NP_417528.1 CDS cca NC_000913.2 3199913 3201151 D tRNA nucleotidyl transferase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase 3199913..3201151 Escherichia coli K12 947553 NP_417529.1 CDS bacA NC_000913.2 3201332 3202153 R bacitracin resistance; possibly phosphorylates undecaprenol; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; undecaprenyl pyrophosphate phosphatase complement(3201332..3202153) Escherichia coli K12 947551 NP_417530.2 CDS folB NC_000913.2 3202243 3202611 R putative kinase; GO_process: folic acid biosynthetic process [goid 0046656]; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase complement(3202243..3202611) Escherichia coli K12 947544 NP_417531.1 CDS ygiH NC_000913.2 3202716 3203333 D conserved inner membrane protein 3202716..3203333 Escherichia coli K12 947561 NP_417532.1 CDS ttdR NC_000913.2 3203346 3204278 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(3203346..3204278) Escherichia coli K12 947562 NP_417533.1 CDS ttdA NC_000913.2 3204485 3205396 D L-tartrate dehydratase, subunit A; GO_process: fermentation [goid 0006113]; L-tartrate dehydratase, alpha subunit 3204485..3205396 Escherichia coli K12 947565 NP_417534.1 CDS ttdB NC_000913.2 3205393 3205998 D L-tartrate dehydratase, subunit B; GO_process: fermentation [goid 0006113]; L-tartrate dehydratase, beta subunit 3205393..3205998 Escherichia coli K12 947568 NP_417535.1 CDS ttdT NC_000913.2 3206046 3207509 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted tartrate:succinate antiporter 3206046..3207509 Escherichia coli K12 947576 NP_417536.1 CDS ygjD NC_000913.2 3207552 3208565 R putative O-sialoglycoprotein endopeptidase; predicted peptidase complement(3207552..3208565) Escherichia coli K12 947578 NP_417537.1 CDS rpsU NC_000913.2 3208803 3209018 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S21 3208803..3209018 Escherichia coli K12 947577 NP_417538.1 CDS dnaG NC_000913.2 3209129 3210874 D DNA biosynthesis; DNA primase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA primase 3209129..3210874 Escherichia coli K12 947570 NP_417539.1 CDS rpoD NC_000913.2 3211069 3212910 D RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, sigma 70 (sigma D) factor 3211069..3212910 Escherichia coli K12 947567 NP_417540.1 CDS mug NC_000913.2 3212989 3213495 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; G/U mismatch-specific DNA glycosylase complement(3212989..3213495) Escherichia coli K12 947560 NP_417541.1 CDS yqjH NC_000913.2 3213749 3214513 R predicted siderophore interacting protein complement(3213749..3214513) Escherichia coli K12 947582 NP_417542.1 CDS yqjI NC_000913.2 3214801 3215424 D predicted transcriptional regulator 3214801..3215424 Escherichia coli K12 947584 NP_417543.1 CDS aer NC_000913.2 3215578 3217098 R aerotaxis sensor receptor, flavoprotein; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: taxis [goid 0042330]; fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component complement(3215578..3217098) Escherichia coli K12 945301 NP_417544.5 CDS ygjG NC_000913.2 3217516 3218895 D probable ornithine aminotransferase; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyridoxine biosynthetic process [goid 0008615]; putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent 3217516..3218895 Escherichia coli K12 947120 NP_417545.1 CDS ygjH NC_000913.2 3218937 3219269 R putative tRNA synthetase; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; conserved protein complement(3218937..3219269) Escherichia coli K12 946251 NP_417546.1 CDS ebgR NC_000913.2 3219488 3220471 D regulator of ebg operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3219488..3220471 Escherichia coli K12 947586 YP_026199.1 CDS ebgA NC_000913.2 3220655 3223747 D evolved beta-D-galactosidase, alpha subunit; cryptic gene; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic beta-D-galactosidase, alpha subunit 3220655..3223747 Escherichia coli K12 947583 NP_417548.1 CDS ebgC NC_000913.2 3223744 3224193 D evolved beta-D-galactosidase, beta subunit; cryptic gene; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic beta-D-galactosidase, beta subunit 3223744..3224193 Escherichia coli K12 947581 YP_026200.1 CDS ygjI NC_000913.2 3224256 3225689 D putative oxidoreductase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3224256..3225689 Escherichia coli K12 947579 NP_417550.1 CDS ygjJ NC_000913.2 3225823 3226893 D conserved protein 3225823..3226893 Escherichia coli K12 947597 NP_417551.1 CDS ygjK NC_000913.2 3226910 3229261 D putative isomerase; predicted glycosyl hydrolase 3226910..3229261 Escherichia coli K12 947596 NP_417552.1 CDS fadH NC_000913.2 3229687 3231705 D GO_process: fatty acid oxidation [goid 0019395]; 2,4-dienoyl-CoA reductase, NADH and FMN-linked 3229687..3231705 Escherichia coli K12 947594 NP_417553.1 CDS ygjM NC_000913.2 3231750 3232166 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(3231750..3232166) Escherichia coli K12 947593 NP_417554.1 CDS ygjN NC_000913.2 3232163 3232477 R conserved protein complement(3232163..3232477) Escherichia coli K12 947591 NP_417555.4 CDS rlmG NC_000913.2 3232761 3233897 R putative enzyme; predicted methyltransferase small domain complement(3232761..3233897) Escherichia coli K12 947589 NP_417556.2 CDS ygjP NC_000913.2 3233982 3234485 D predicted metal dependent hydrolase 3233982..3234485 Escherichia coli K12 947650 NP_417557.1 CDS ygjQ NC_000913.2 3234562 3235254 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted thioredoxin-like protein 3234562..3235254 Escherichia coli K12 947598 NP_417558.2 CDS ygjR NC_000913.2 3235333 3236319 D predicted NAD(P)-binding dehydrogenase 3235333..3236319 Escherichia coli K12 947600 YP_026201.1 CDS alx NC_000913.2 3236602 3237567 D putative transport protein; GO_process: response to stress [goid 0006950]; predicted inner membrane protein, part of terminus 3236602..3237567 Escherichia coli K12 947607 NP_417560.1 CDS sstT NC_000913.2 3237966 3239210 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-serine biosynthetic process [goid 0006564]; GO_process: threonine biosynthetic process [goid 0009088]; sodium:serine/threonine symporter 3237966..3239210 Escherichia coli K12 947605 NP_417561.1 CDS ygjV NC_000913.2 3239215 3239766 R conserved inner membrane protein complement(3239215..3239766) Escherichia coli K12 947604 NP_417562.1 CDS uxaA NC_000913.2 3239849 3241336 R GO_process: carbohydrate catabolic process [goid 0016052]; altronate hydrolase complement(3239849..3241336) Escherichia coli K12 947603 NP_417563.1 CDS uxaC NC_000913.2 3241351 3242763 R GO_process: carbohydrate catabolic process [goid 0016052]; uronate isomerase complement(3241351..3242763) Escherichia coli K12 947599 NP_417564.1 CDS exuT NC_000913.2 3243126 3244544 D transport of hexuronates; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; hexuronate transporter 3243126..3244544 Escherichia coli K12 947601 NP_417565.2 CDS exuR NC_000913.2 3244674 3245450 D negative regulator of exu regulon, exuT, uxaAC, and uxuB; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3244674..3245450 Escherichia coli K12 947602 NP_417566.1 CDS yqjA NC_000913.2 3245795 3246457 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3245795..3246457 Escherichia coli K12 947643 NP_417567.1 CDS yqjB NC_000913.2 3246461 3246844 D conserved protein 3246461..3246844 Escherichia coli K12 947619 NP_417568.2 CDS yqjC NC_000913.2 3246991 3247359 D conserved protein 3246991..3247359 Escherichia coli K12 947622 NP_417569.1 CDS yqjD NC_000913.2 3247397 3247702 D conserved protein 3247397..3247702 Escherichia coli K12 947614 NP_417570.1 CDS yqjE NC_000913.2 3247705 3248109 D conserved inner membrane protein 3247705..3248109 Escherichia coli K12 947611 NP_417571.1 CDS yqjK NC_000913.2 3248099 3248398 D conserved protein 3248099..3248398 Escherichia coli K12 947610 NP_417572.2 CDS yqjF NC_000913.2 3248584 3248976 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted quinol oxidase subunit 3248584..3248976 Escherichia coli K12 947608 NP_417573.1 CDS yqjG NC_000913.2 3249046 3250032 D putative transferase; predicted S-transferase 3249046..3250032 Escherichia coli K12 947615 NP_417574.1 CDS yhaH NC_000913.2 3250326 3250691 D putative cytochrome; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3250326..3250691 Escherichia coli K12 947617 NP_417575.1 CDS yhaI NC_000913.2 3250933 3251289 D putative cytochrome; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3250933..3251289 Escherichia coli K12 947612 NP_417576.1 CDS yhaJ NC_000913.2 3251340 3252236 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(3251340..3252236) Escherichia coli K12 947621 NP_417577.1 CDS yhaK NC_000913.2 3252341 3253042 D predicted pirin-related protein 3252341..3253042 Escherichia coli K12 947620 NP_417578.2 CDS yhaL NC_000913.2 3253065 3253229 D predicted protein 3253065..3253229 Escherichia coli K12 947618 YP_026202.1 CDS yhaM NC_000913.2 3253363 3254673 R conserved hypothetical protein; conserved protein complement(3253363..3254673) Escherichia coli K12 2847723 YP_026203.3 CDS yhaO NC_000913.2 3254701 3256032 R putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(3254701..3256032) Escherichia coli K12 947628 YP_026204.1 CDS tdcG NC_000913.2 3256307 3257671 R L-serine dehydratase; GO_process: amino acid catabolic process [goid 0009063]; L-serine dehydratase 3 complement(3256307..3257671) Escherichia coli K12 2847724 NP_417583.4 CDS tdcF NC_000913.2 3257743 3258132 R predicted L-PSP (mRNA) endoribonuclease complement(3257743..3258132) Escherichia coli K12 947624 YP_026205.1 CDS tdcE NC_000913.2 3258146 3260440 R probable formate acetyltransferase 3; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; pyruvate formate-lyase 4/2-ketobutyrate formate-lyase complement(3258146..3260440) Escherichia coli K12 947623 NP_417585.2 CDS tdcD NC_000913.2 3260474 3261682 R propionate kinase/acetate kinase II, anaerobic; GO_process: amino acid catabolic process [goid 0009063]; propionate kinase/acetate kinase C, anaerobic complement(3260474..3261682) Escherichia coli K12 947635 NP_417586.1 CDS tdcC NC_000913.2 3261708 3263039 R anaerobically inducible L-threonine, L-serine permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: threonine biosynthetic process [goid 0009088]; L-threonine/L-serine transporter complement(3261708..3263039) Escherichia coli K12 947629 NP_417587.1 CDS tdcB NC_000913.2 3263061 3264050 R threonine dehydratase, catabolic; GO_process: amino acid catabolic process [goid 0009063]; catabolic threonine dehydratase, PLP-dependent complement(3263061..3264050) Escherichia coli K12 947633 NP_417588.1 CDS tdcA NC_000913.2 3264149 3265087 R transcriptional activator of tdc operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(3264149..3265087) Escherichia coli K12 947494 NP_417589.4 CDS tdcR NC_000913.2 3265402 3265620 D threonine dehydratase operon activator protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 3265402..3265620 Escherichia coli K12 944907 NP_417590.2 CDS yhaB NC_000913.2 3265876 3266415 D predicted protein 3265876..3266415 Escherichia coli K12 947705 NP_417591.1 CDS yhaC NC_000913.2 3266437 3267624 D predicted protein 3266437..3267624 Escherichia coli K12 947557 NP_417593.4 CDS garK NC_000913.2 3268647 3269792 R GO_process: carbohydrate catabolic process [goid 0016052]; glycerate kinase I complement(3268647..3269792) Escherichia coli K12 947632 NP_417594.3 CDS garR NC_000913.2 3269889 3270773 R tartronate semialdehyde reductase (TSAR); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; tartronate semialdehyde reductase complement(3269889..3270773) Escherichia coli K12 947631 NP_417595.1 CDS garL NC_000913.2 3270809 3271579 R GO_process: carbohydrate catabolic process [goid 0016052]; alpha-dehydro-beta-deoxy-D-glucarate aldolase complement(3270809..3271579) Escherichia coli K12 947630 NP_417596.1 CDS garP NC_000913.2 3271595 3272929 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted (D)-galactarate transporter complement(3271595..3272929) Escherichia coli K12 947642 NP_417597.1 CDS garD NC_000913.2 3273304 3274875 D GO_process: carbohydrate catabolic process [goid 0016052]; (D)-galactarate dehydrogenase 3273304..3274875 Escherichia coli K12 947641 NP_417598.1 CDS sohA NC_000913.2 3275024 3275359 D putative protease; htrA suppressor protein; predicted regulator 3275024..3275359 Escherichia coli K12 947639 NP_417599.1 CDS yhaV NC_000913.2 3275359 3275823 D conserved protein 3275359..3275823 Escherichia coli K12 947638 NP_417600.1 CDS agaR NC_000913.2 3275878 3276687 R putative DEOR-type transcriptional regulator of aga operon; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino sugar biosynthetic process [goid 0046349]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(3275878..3276687) Escherichia coli K12 947636 NP_417601.1 CDS kbaZ NC_000913.2 3276936 3278216 D putative tagatose 6-phosphate kinase 2; GO_process: carbohydrate catabolic process [goid 0016052]; tagatose 6-phosphate aldolase 1, kbaZ subunit 3276936..3278216 Escherichia coli K12 947637 NP_417602.4 CDS agaV NC_000913.2 3278239 3278712 D PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA); GO_component: cytoplasm [goid 0005737]; GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylgalactosamine-specific enzyme IIB component of PTS 3278239..3278712 Escherichia coli K12 947648 b3134 CDS agaW NC_000913.2 3278723 3279097 D N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene);enzyme; Central intermediary metabolism: Amino sugars PTS system N-acetylgalactosameine-specific IIC component 2; GO_process: amino sugar biosynthetic process [goid 0046349]; 3278723..3279097 Escherichia coli K12 947647 b3135 CDS agaA NC_000913.2 3279093 3279647 D pseudogene, predicted truncated N-acetylgalactosamine-6-phosphate deacetylase putative N-acetylgalactosamine-6-phosphate deacetylase; 3279093..3279647 Escherichia coli K12 947646 NP_417605.1 CDS agaS NC_000913.2 3279998 3281152 D putative tagatose-6-phosphate aldose/ketose isomerase; tagatose-6-phosphate ketose/aldose isomerase 3279998..3281152 Escherichia coli K12 947645 NP_417606.1 CDS kbaY NC_000913.2 3281165 3282025 D tagatose-bisphosphate aldolase 2; GO_process: carbohydrate catabolic process [goid 0016052]; tagatose 6-phosphate aldolase 1, kbaY subunit 3281165..3282025 Escherichia coli K12 947644 NP_417607.1 CDS agaB NC_000913.2 3282192 3282668 D PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA); GO_component: cytoplasm [goid 0005737]; N-acetylgalactosamine-specific enzyme IIB component of PTS 3282192..3282668 Escherichia coli K12 947653 NP_417608.1 CDS agaC NC_000913.2 3282707 3283510 D PTS system N-acetylgalactosamine-specific IIC component 1; N-acetylgalactosamine-specific enzyme IIC component of PTS 3282707..3283510 Escherichia coli K12 947652 NP_417609.1 CDS agaD NC_000913.2 3283500 3284291 D PTS system, N-acetylglucosamine enzyme IID component 1; GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylgalactosamine-specific enzyme IID component of PTS 3283500..3284291 Escherichia coli K12 947649 NP_417610.1 CDS agaI NC_000913.2 3284292 3285047 D putative galactosamine-6-phosphate isomerase; galactosamine-6-phosphate isomerase 3284292..3285047 Escherichia coli K12 947985 NP_417611.1 CDS yraH NC_000913.2 3285448 3286032 D putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 3285448..3286032 Escherichia coli K12 947658 NP_417612.1 CDS yraI NC_000913.2 3286112 3286807 D putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 3286112..3286807 Escherichia coli K12 947657 NP_417613.1 CDS yraJ NC_000913.2 3286836 3289352 D putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 3286836..3289352 Escherichia coli K12 947656 NP_417614.1 CDS yraK NC_000913.2 3289363 3290454 D putative fimbrial protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 3289363..3290454 Escherichia coli K12 947654 NP_417615.1 CDS yraL NC_000913.2 3290497 3291357 R predicted methyltransferase complement(3290497..3291357) Escherichia coli K12 947664 NP_417616.1 CDS yraM NC_000913.2 3291422 3293458 D putative glycosylase; conserved protein 3291422..3293458 Escherichia coli K12 947663 NP_417617.1 CDS yraN NC_000913.2 3293416 3293811 D conserved protein 3293416..3293811 Escherichia coli K12 947662 NP_417618.1 CDS diaA NC_000913.2 3293831 3294421 D DnaA initiator-associating factor for replication initiation 3293831..3294421 Escherichia coli K12 947661 NP_417619.1 CDS yraP NC_000913.2 3294431 3295006 D putative periplasmic protein; GO_component: periplasmic space [goid 0042597]; predicted protein 3294431..3295006 Escherichia coli K12 947659 NP_417620.1 CDS yraQ NC_000913.2 3295120 3296160 R predicted permease complement(3295120..3296160) Escherichia coli K12 947668 NP_417621.2 CDS yraR NC_000913.2 3296233 3296868 R predicted nucleoside-diphosphate-sugar epimerase complement(3296233..3296868) Escherichia coli K12 947667 NP_417622.2 CDS yhbO NC_000913.2 3296996 3297514 D predicted intracellular protease 3296996..3297514 Escherichia coli K12 947666 NP_417623.1 CDS yhbP NC_000913.2 3297494 3297937 R conserved protein complement(3297494..3297937) Escherichia coli K12 947665 NP_417624.1 CDS yhbQ NC_000913.2 3297988 3298290 D predicted endonuclease 3297988..3298290 Escherichia coli K12 947671 NP_417625.1 CDS yhbS NC_000913.2 3298277 3298780 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted acyltransferase with acyl-CoA N-acyltransferase domain complement(3298277..3298780) Escherichia coli K12 947670 NP_417626.1 CDS yhbT NC_000913.2 3298774 3299298 R predicted lipid carrier protein complement(3298774..3299298) Escherichia coli K12 947669 NP_417627.1 CDS yhbU NC_000913.2 3299507 3300502 D putative collagenase; predicted peptidase (collagenase-like) 3299507..3300502 Escherichia coli K12 949115 NP_417628.2 CDS yhbV NC_000913.2 3300511 3301389 D predicted protease 3300511..3301389 Escherichia coli K12 949117 NP_417629.1 CDS yhbW NC_000913.2 3301470 3302477 D putative enzyme; predicted enzyme 3301470..3302477 Escherichia coli K12 947677 NP_417630.1 CDS mtr NC_000913.2 3302595 3303839 R tryptophan-specific transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan transporter of high affinity complement(3302595..3303839) Escherichia coli K12 947675 NP_417631.2 CDS deaD NC_000913.2 3303993 3305882 R inducible ATP-independent RNA helicase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ATP-dependent RNA helicase complement(3303993..3305882) Escherichia coli K12 947674 NP_417632.1 CDS nlpI NC_000913.2 3306062 3306946 R conserved protein complement(3306062..3306946) Escherichia coli K12 947673 NP_417633.4 CDS pnp NC_000913.2 3307055 3309190 R polynucleotide phosphorylase; cytidylate kinase activity; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; polynucleotide phosphorylase/polyadenylase complement(3307055..3309190) Escherichia coli K12 947672 NP_417634.1 CDS rpsO NC_000913.2 3309437 3309706 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S15 complement(3309437..3309706) Escherichia coli K12 947686 NP_417635.1 CDS truB NC_000913.2 3309855 3310799 R tRNA pseudouridine 5S synthase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA pseudouridine synthase complement(3309855..3310799) Escherichia coli K12 947687 NP_417636.1 CDS rbfA NC_000913.2 3310799 3311200 R ribosome-binding factor A; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 30s ribosome binding factor complement(3310799..3311200) Escherichia coli K12 947685 NP_417637.1 CDS infB NC_000913.2 3311364 3314036 R protein chain initiation factor IF-2; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; fused protein chain initiation factor 2, IF2: membrane protein/conserved protein complement(3311364..3314036) Escherichia coli K12 947684 NP_417638.1 CDS nusA NC_000913.2 3314061 3315548 R transcription pausing; L factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; transcription termination/antitermination L factor complement(3314061..3315548) Escherichia coli K12 947682 NP_417639.5 CDS yhbC NC_000913.2 3315576 3316034 R conserved protein complement(3315576..3316034) Escherichia coli K12 947680 NP_417640.1 CDS argG NC_000913.2 3316659 3318002 D GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; argininosuccinate synthetase 3316659..3318002 Escherichia coli K12 947590 NP_417641.4 CDS yhbX NC_000913.2 3318010 3319635 R putative alkaline phosphatase I; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted hydrolase, inner membrane complement(3318010..3319635) Escherichia coli K12 947711 NP_417642.1 CDS secG NC_000913.2 3320195 3320527 R protein export - membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; preprotein translocase membrane subunit complement(3320195..3320527) Escherichia coli K12 947720 NP_417643.1 CDS glmM NC_000913.2 3320755 3322092 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; GO_process: glucose metabolic process [goid 0006006]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; phosphoglucosamine mutase complement(3320755..3322092) Escherichia coli K12 947692 NP_417644.4 CDS folP NC_000913.2 3322085 3322933 R GO_process: folic acid biosynthetic process [goid 0046656]; 7,8-dihydropteroate synthase complement(3322085..3322933) Escherichia coli K12 947691 NP_417645.1 CDS hflB NC_000913.2 3323023 3324957 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; protease, ATP-dependent zinc-metallo complement(3323023..3324957) Escherichia coli K12 947690 NP_417646.1 CDS rrmJ NC_000913.2 3325057 3325686 R 23S rRNA methyltransferase complement(3325057..3325686) Escherichia coli K12 947689 NP_417647.1 CDS yhbY NC_000913.2 3325812 3326105 D predicted RNA-binding protein 3325812..3326105 Escherichia coli K12 947688 NP_417648.4 CDS greA NC_000913.2 3326261 3326737 R transcription elongation factor: cleaves 3' nucleotide of paused mRNA; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; transcription elongation factor complement(3326261..3326737) Escherichia coli K12 947696 NP_417649.1 CDS dacB NC_000913.2 3326985 3328418 D D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine carboxypeptidase 3326985..3328418 Escherichia coli K12 947693 NP_417650.1 CDS obgE NC_000913.2 3328604 3329776 R putative GTP-binding factor; GTPase involved in cell partioning and DNA repair complement(3328604..3329776) Escherichia coli K12 947694 NP_417651.1 CDS yhbE NC_000913.2 3329792 3330757 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(3329792..3330757) Escherichia coli K12 947699 NP_417652.1 CDS rpmA NC_000913.2 3330884 3331141 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L27 complement(3330884..3331141) Escherichia coli K12 945190 NP_417653.1 CDS rplU NC_000913.2 3331162 3331473 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L21 complement(3331162..3331473) Escherichia coli K12 949057 NP_417654.1 CDS ispB NC_000913.2 3331732 3332703 D octaprenyl diphosphate synthase 3331732..3332703 Escherichia coli K12 947364 NP_417655.1 CDS sfsB NC_000913.2 3332931 3333209 D regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of maltose metabolism 3332931..3333209 Escherichia coli K12 947960 NP_417656.1 CDS murA NC_000913.2 3333257 3334516 R first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3333257..3334516) Escherichia coli K12 947703 NP_417657.2 CDS yrbA NC_000913.2 3334571 3334825 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(3334571..3334825) Escherichia coli K12 947958 NP_417658.4 CDS yrbB NC_000913.2 3334985 3335278 R predicted protein complement(3334985..3335278) Escherichia coli K12 947954 NP_417659.1 CDS yrbC NC_000913.2 3335278 3335913 R GO_component: cytoplasm [goid 0005737]; predicted ABC-type organic solvent transporter complement(3335278..3335913) Escherichia coli K12 947710 NP_417660.1 CDS yrbD NC_000913.2 3335932 3336483 R predicted ABC-type organic solvent transporter complement(3335932..3336483) Escherichia coli K12 947712 NP_417661.1 CDS yrbE NC_000913.2 3336488 3337270 R predicted toluene transporter subunit: membrane component of ABC superfamily complement(3336488..3337270) Escherichia coli K12 947732 NP_417662.1 CDS yrbF NC_000913.2 3337278 3338087 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted toluene transporter subunit: ATP-binding component of ABC superfamily complement(3337278..3338087) Escherichia coli K12 947729 NP_417663.1 CDS yrbG NC_000913.2 3338297 3339274 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: calcium:sodium antiporter activity [goid 0005432]; predicted calcium/sodium:proton antiporter 3338297..3339274 Escherichia coli K12 947730 NP_417664.1 CDS kdsD NC_000913.2 3339288 3340274 D putative isomerase; D-arabinose 5-phosphate isomerase 3339288..3340274 Escherichia coli K12 947734 NP_417665.1 CDS kdsC NC_000913.2 3340295 3340861 D 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3340295..3340861 Escherichia coli K12 947717 NP_417666.1 CDS yrbK NC_000913.2 3340858 3341433 D conserved protein 3340858..3341433 Escherichia coli K12 947722 NP_417667.1 CDS lptA NC_000913.2 3341402 3341959 D predicted transporter subunit: periplasmic-binding component of ABC superfamily 3341402..3341959 Escherichia coli K12 947920 NP_417668.1 CDS lptB NC_000913.2 3341966 3342691 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 3341966..3342691 Escherichia coli K12 947725 NP_417669.1 CDS rpoN NC_000913.2 3342739 3344172 D RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: transcription [goid 0006350]; RNA polymerase, sigma 54 (sigma N) factor 3342739..3344172 Escherichia coli K12 947714 NP_417670.1 CDS hpf NC_000913.2 3344195 3344482 D probable sigma-54 modulation protein; GO_process: transcription [goid 0006350]; predicted ribosome-associated, sigma 54 modulation protein 3344195..3344482 Escherichia coli K12 947718 NP_417671.1 CDS ptsN NC_000913.2 3344600 3345091 D phosphotransferase system enzyme IIA, regulates N metabolism; sugar-specific enzyme IIA component of PTS 3344600..3345091 Escherichia coli K12 947721 NP_417672.1 CDS yhbJ NC_000913.2 3345137 3345991 D predicted protein with nucleoside triphosphate hydrolase domain 3345137..3345991 Escherichia coli K12 947727 NP_417673.1 CDS npr NC_000913.2 3345988 3346260 D phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3345988..3346260 Escherichia coli K12 947914 NP_417674.1 CDS yrbL NC_000913.2 3346474 3347106 D predicted protein 3346474..3347106 Escherichia coli K12 947910 NP_417675.1 CDS mtgA NC_000913.2 3347103 3347831 R putative peptidoglycan enzyme; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; biosynthetic peptidoglycan transglycosylase complement(3347103..3347831) Escherichia coli K12 947728 NP_417676.2 CDS elbB NC_000913.2 3347828 3348481 R sigma cross-reacting protein 27A (SCRP-27A); isoprenoid biosynthesis protein with amidotransferase-like domain complement(3347828..3348481) Escherichia coli K12 947903 YP_026207.1 CDS arcB NC_000913.2 3348711 3351047 R aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase in two-component regulatory system with ArcA complement(3348711..3351047) Escherichia coli K12 947887 NP_417678.1 CDS yhcC NC_000913.2 3351143 3352072 R predicted Fe-S oxidoreductase complement(3351143..3352072) Escherichia coli K12 947733 NP_417679.1 CDS gltB NC_000913.2 3352654 3357207 D GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: nitrogen compound metabolic process [goid 0006807]; glutamate synthase, large subunit 3352654..3357207 Escherichia coli K12 947724 NP_417680.1 CDS gltD NC_000913.2 3357220 3358638 D glutamate synthase, small subunit; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: nitrogen compound metabolic process [goid 0006807]; glutamate synthase, 4Fe-4S protein, small subunit 3357220..3358638 Escherichia coli K12 947723 NP_417681.1 CDS gltF NC_000913.2 3359198 3359962 D regulator of gltBDF operon, induction of Ntr enzymes; GO_component: periplasmic space [goid 0042597]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; periplasmic protein 3359198..3359962 Escherichia coli K12 947746 NP_417682.1 CDS yhcA NC_000913.2 3360134 3360808 D putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic chaperone protein 3360134..3360808 Escherichia coli K12 947741 NP_417683.1 CDS yhcD NC_000913.2 3360829 3363210 D putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 3360829..3363210 Escherichia coli K12 947738 b4569 CDS yhcE NC_000913.2 3363207 3364951 D predicted protein, N-ter fragment (pseudogene) interrupted by IS5; join(3363207..3363573,3364773..3364951) Escherichia coli K12 4056032 NP_417685.1 CDS insH NC_000913.2 3363724 3364740 R IS5 transposase and trans-activator complement(3363724..3364740) Escherichia coli K12 947743 NP_417686.1 CDS yhcF NC_000913.2 3364948 3365664 D putative transcriptional regulator; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 3364948..3365664 Escherichia coli K12 947735 NP_417687.1 CDS yhcG NC_000913.2 3365849 3366976 D conserved protein 3365849..3366976 Escherichia coli K12 947739 NP_417688.1 CDS yhcH NC_000913.2 3367036 3367500 R conserved protein complement(3367036..3367500) Escherichia coli K12 947750 NP_417689.4 CDS nanK NC_000913.2 3367497 3368372 R GO_component: cytoplasm [goid 0005737]; GO_process: amino sugar biosynthetic process [goid 0046349]; predicted N-acetylmannosamine kinase complement(3367497..3368372) Escherichia coli K12 947757 NP_417690.1 CDS nanE NC_000913.2 3368369 3369058 R GO_component: cytoplasm [goid 0005737]; GO_process: amino sugar biosynthetic process [goid 0046349]; predicted N-acetylmannosamine-6-P epimerase complement(3368369..3369058) Escherichia coli K12 947745 NP_417691.4 CDS nanT NC_000913.2 3369106 3370596 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino sugar biosynthetic process [goid 0046349]; sialic acid transporter complement(3369106..3370596) Escherichia coli K12 947740 NP_417692.1 CDS nanA NC_000913.2 3370705 3371598 R N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K-12?; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylneuraminate lyase complement(3370705..3371598) Escherichia coli K12 947742 NP_417693.3 CDS nanR NC_000913.2 3371720 3372511 R GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(3371720..3372511) Escherichia coli K12 945468 NP_417694.1 CDS dcuD NC_000913.2 3372891 3374258 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3372891..3374258 Escherichia coli K12 946575 NP_417695.1 CDS sspB NC_000913.2 3374301 3374798 R stringent starvation protein B; GO_process: response to starvation [goid 0042594]; ClpXP protease specificity-enhancing factor complement(3374301..3374798) Escherichia coli K12 944774 NP_417696.1 CDS sspA NC_000913.2 3374804 3375442 R regulator of transcription; stringent starvation protein A; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; GO_process: response to starvation [goid 0042594]; stringent starvation protein A complement(3374804..3375442) Escherichia coli K12 944744 NP_417697.1 CDS rpsI NC_000913.2 3375837 3376229 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S9 complement(3375837..3376229) Escherichia coli K12 949000 NP_417698.1 CDS rplM NC_000913.2 3376245 3376673 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L13 complement(3376245..3376673) Escherichia coli K12 947828 NP_417699.1 CDS yhcM NC_000913.2 3376892 3378019 R conserved protein with nucleoside triphosphate hydrolase domain complement(3376892..3378019) Escherichia coli K12 947821 NP_417700.2 CDS yhcB NC_000913.2 3378213 3378611 D conserved protein 3378213..3378611 Escherichia coli K12 947815 NP_417701.1 CDS degQ NC_000913.2 3378765 3380132 D serine endoprotease; serine endoprotease, periplasmic 3378765..3380132 Escherichia coli K12 947812 NP_417702.1 CDS degS NC_000913.2 3380222 3381289 D protease; GO_component: periplasmic space [goid 0042597]; GO_function: peptidase activity [goid 0008233]; GO_process: proteolysis [goid 0006508]; serine endoprotease, periplasmic 3380222..3381289 Escherichia coli K12 947865 NP_417703.1 CDS mdh NC_000913.2 3381352 3382290 R malate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; GO_process: gluconeogenesis [goid 0006094]; GO_process: glyoxylate catabolic process [goid 0009436]; malate dehydrogenase, NAD(P)-binding complement(3381352..3382290) Escherichia coli K12 947854 NP_417704.1 CDS argR NC_000913.2 3382725 3383195 D repressor of arg regulon; cer-mediated site specific recombination; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, L-arginine-binding 3382725..3383195 Escherichia coli K12 947861 NP_417705.2 CDS yhcN NC_000913.2 3383560 3383823 D conserved protein 3383560..3383823 Escherichia coli K12 947835 NP_417706.1 CDS yhcO NC_000913.2 3383879 3384151 R predicted barnase inhibitor complement(3383879..3384151) Escherichia coli K12 947830 NP_417707.1 CDS aaeB NC_000913.2 3384243 3386210 R GO_component: peptidoglycan-based cell wall [goid 0009274]; p-hydroxybenzoic acid efflux system component complement(3384243..3386210) Escherichia coli K12 947747 NP_417708.1 CDS aaeA NC_000913.2 3386216 3387148 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; p-hydroxybenzoic acid efflux system component complement(3386216..3387148) Escherichia coli K12 947748 NP_417709.2 CDS aaeX NC_000913.2 3387156 3387359 R membrane protein of efflux system complement(3387156..3387359) Escherichia coli K12 947751 NP_417710.1 CDS aaeR NC_000913.2 3387542 3388471 D GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator, efflux system 3387542..3388471 Escherichia coli K12 947760 NP_417711.1 CDS tldD NC_000913.2 3388605 3390050 R suppresses inhibitory activity of CsrA; predicted peptidase complement(3388605..3390050) Escherichia coli K12 947749 YP_026208.1 CDS yhdP NC_000913.2 3390480 3394280 R conserved membrane protein, predicted transporter complement(3390480..3394280) Escherichia coli K12 2847740 NP_417713.2 CDS rng NC_000913.2 3394348 3395817 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ribonuclease G complement(3394348..3395817) Escherichia coli K12 947744 NP_417714.1 CDS yhdE NC_000913.2 3395807 3396400 R conserved protein complement(3395807..3396400) Escherichia coli K12 947753 NP_417715.1 CDS mreD NC_000913.2 3396409 3396897 R rod shape-determining protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; cell wall structural complex MreBCD transmembrane component MreD complement(3396409..3396897) Escherichia coli K12 947756 NP_417716.1 CDS mreC NC_000913.2 3396897 3398000 R rod shape-determining protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; cell wall structural complex MreBCD transmembrane component MreC complement(3396897..3398000) Escherichia coli K12 947655 NP_417717.2 CDS mreB NC_000913.2 3398066 3399109 R regulator of ftsI, penicillin binding protein 3, septation function; GO_process: response to drug [goid 0042493]; cell wall structural complex MreBCD, actin-like component MreB complement(3398066..3399109) Escherichia coli K12 948588 NP_417718.1 CDS csrD NC_000913.2 3399414 3401354 R conserved inner membrane protein complement(3399414..3401354) Escherichia coli K12 947702 NP_417719.1 CDS yhdH NC_000913.2 3401506 3402480 D putative dehydrogenase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 3401506..3402480 Escherichia coli K12 947848 b4646 CDS yrdE NC_000913.2 3402666 3403053 D pseudogene, yedZ paralog; join(3402666..3402755,3402754..3403053) Escherichia coli K12 5625572 NP_417721.1 CDS accB NC_000913.2 3403458 3403928 D acetylCoA carboxylase, BCCP subunit; carrier of biotin; GO_process: biotin carboxyl carrier protein biosynthetic process [goid 0042966]; acetyl CoA carboxylase, BCCP subunit 3403458..3403928 Escherichia coli K12 947758 NP_417722.1 CDS accC NC_000913.2 3403939 3405288 D acetyl CoA carboxylase, biotin carboxylase subunit; GO_component: cytoplasm [goid 0005737]; acetyl-CoA carboxylase, biotin carboxylase subunit 3403939..3405288 Escherichia coli K12 947761 NP_417723.1 CDS yhdT NC_000913.2 3405397 3405639 D conserved inner membrane protein 3405397..3405639 Escherichia coli K12 947762 NP_417724.4 CDS panF NC_000913.2 3405629 3407080 D sodium/pantothenate symporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: coenzyme A biosynthetic process [goid 0015937]; pantothenate:sodium symporter 3405629..3407080 Escherichia coli K12 947752 NP_417725.1 CDS prmA NC_000913.2 3407092 3407973 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; methylase for 50S ribosomal subunit protein L11 3407092..3407973 Escherichia coli K12 947708 NP_417726.1 CDS dusB NC_000913.2 3408302 3409267 D putative dehydrogenase; tRNA-dihydrouridine synthase B 3408302..3409267 Escherichia coli K12 947707 NP_417727.1 CDS fis NC_000913.2 3409293 3409589 D site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; global DNA-binding transcriptional dual regulator 3409293..3409589 Escherichia coli K12 947697 NP_417728.4 CDS yhdJ NC_000913.2 3409675 3410559 D putative methyltransferase; predicted methyltransferase 3409675..3410559 Escherichia coli K12 947695 NP_417729.1 CDS yhdU NC_000913.2 3410643 3410822 D predicted membrane protein 3410643..3410822 Escherichia coli K12 947700 NP_417730.1 CDS envR NC_000913.2 3410825 3411487 R putative transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional regulator complement(3410825..3411487) Escherichia coli K12 947704 NP_417731.1 CDS acrE NC_000913.2 3411886 3413043 D transmembrane protein affects septum formation and cell membrane permeability; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cytoplasmic membrane lipoprotein 3411886..3413043 Escherichia coli K12 947706 NP_417732.1 CDS acrF NC_000913.2 3413055 3416159 D integral transmembrane protein; acridine resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 3413055..3416159 Escherichia coli K12 947768 NP_417733.1 CDS yhdV NC_000913.2 3416412 3416633 D predicted outer membrane protein 3416412..3416633 Escherichia coli K12 947767 b3268 CDS yhdW NC_000913.2 3417064 3418088 D predicted amino-acid transporter subunit;putative transport; Not classified putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; join(3417064..3417129,3417129..3418088) Escherichia coli K12 947766 YP_026209.1 CDS yhdX NC_000913.2 3418156 3419337 D putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted amino-acid transporter subunit 3418156..3419337 Escherichia coli K12 947765 NP_417736.2 CDS yhdY NC_000913.2 3419347 3420450 D putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted amino-acid transporter subunit 3419347..3420450 Escherichia coli K12 947764 NP_417737.1 CDS yhdZ NC_000913.2 3420458 3421216 D putative ATP-binding component of a transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; predicted amino-acid transporter subunit 3420458..3421216 Escherichia coli K12 947763 NP_417738.4 CDS yrdA NC_000913.2 3427258 3427812 D putative transferase; conserved protein 3427258..3427812 Escherichia coli K12 947775 NP_417739.1 CDS yrdB NC_000913.2 3427788 3428045 R conserved protein complement(3427788..3428045) Escherichia coli K12 947774 NP_417740.1 CDS aroE NC_000913.2 3428042 3428860 R dehydroshikimate reductase; GO_process: chorismate biosynthetic process [goid 0009423]; dehydroshikimate reductase, NAD(P)-binding complement(3428042..3428860) Escherichia coli K12 947776 NP_417741.1 CDS rimN NC_000913.2 3428865 3429437 R predicted ribosome maturation factor complement(3428865..3429437) Escherichia coli K12 947783 YP_026210.1 CDS yrdD NC_000913.2 3429442 3429984 R putative DNA topoisomerase; predicted DNA topoisomerase complement(3429442..3429984) Escherichia coli K12 947782 NP_417743.1 CDS smg NC_000913.2 3430013 3430486 R conserved protein complement(3430013..3430486) Escherichia coli K12 947781 YP_026211.1 CDS smf NC_000913.2 3430458 3431582 R conserved protein complement(3430458..3431582) Escherichia coli K12 2847708 NP_417745.1 CDS def NC_000913.2 3431712 3432221 D GO_process: protein modification [goid 0006464]; peptide deformylase 3431712..3432221 Escherichia coli K12 947780 NP_417746.1 CDS fmt NC_000913.2 3432236 3433183 D GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase 3432236..3433183 Escherichia coli K12 947779 NP_417747.1 CDS rsmB NC_000913.2 3433229 3434518 D 16S rRNA m5C967 methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent 3433229..3434518 Escherichia coli K12 947789 NP_417748.1 CDS trkA NC_000913.2 3434540 3435916 D transport of potassium; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; NAD-binding component of TrK potassium transporter 3434540..3435916 Escherichia coli K12 947788 NP_417749.1 CDS mscL NC_000913.2 3436046 3436456 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; mechanosensitive channel 3436046..3436456 Escherichia coli K12 947787 YP_588467.1 CDS yhdL NC_000913.2 3436453 3436671 R GO_component: cytoplasm [goid 0005737]; conserved protein complement(3436453..3436671) Escherichia coli K12 1450289 NP_417751.1 CDS zntR NC_000913.2 3436727 3437152 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional activator in response to Zn(II) complement(3436727..3437152) Escherichia coli K12 947786 NP_417752.1 CDS yhdN NC_000913.2 3437163 3437531 R conserved protein complement(3437163..3437531) Escherichia coli K12 947785 NP_417753.1 CDS rplQ NC_000913.2 3437638 3438021 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L17 complement(3437638..3438021) Escherichia coli K12 947784 NP_417754.1 CDS rpoA NC_000913.2 3438062 3439051 R GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, alpha subunit complement(3438062..3439051) Escherichia coli K12 947794 NP_417755.1 CDS rpsD NC_000913.2 3439077 3439697 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S4 complement(3439077..3439697) Escherichia coli K12 947793 NP_417756.1 CDS rpsK NC_000913.2 3439731 3440120 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S11 complement(3439731..3440120) Escherichia coli K12 947792 NP_417757.1 CDS rpsM NC_000913.2 3440137 3440493 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S13 complement(3440137..3440493) Escherichia coli K12 947791 NP_417758.1 CDS rpmJ NC_000913.2 3440640 3440756 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L36 complement(3440640..3440756) Escherichia coli K12 947805 NP_417759.1 CDS secY NC_000913.2 3440788 3442119 R putative ATPase subunit of translocase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; preprotein translocase membrane subunit complement(3440788..3442119) Escherichia coli K12 947799 NP_417760.1 CDS rplO NC_000913.2 3442127 3442561 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L15 complement(3442127..3442561) Escherichia coli K12 947798 NP_417761.1 CDS rpmD NC_000913.2 3442565 3442744 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L30 complement(3442565..3442744) Escherichia coli K12 947797 NP_417762.1 CDS rpsE NC_000913.2 3442748 3443251 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S5 complement(3442748..3443251) Escherichia coli K12 947795 NP_417763.1 CDS rplR NC_000913.2 3443266 3443619 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L18 complement(3443266..3443619) Escherichia coli K12 947804 NP_417764.1 CDS rplF NC_000913.2 3443629 3444162 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L6 complement(3443629..3444162) Escherichia coli K12 947803 NP_417765.1 CDS rpsH NC_000913.2 3444175 3444567 R 30S ribosomal subunit protein S8, and regulator; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; GO_process: translational attenuation [goid 0009386]; 30S ribosomal subunit protein S8 complement(3444175..3444567) Escherichia coli K12 947802 NP_417766.1 CDS rpsN NC_000913.2 3444601 3444906 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S14 complement(3444601..3444906) Escherichia coli K12 947801 NP_417767.1 CDS rplE NC_000913.2 3444921 3445460 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L5 complement(3444921..3445460) Escherichia coli K12 947800 NP_417768.1 CDS rplX NC_000913.2 3445475 3445789 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L24 complement(3445475..3445789) Escherichia coli K12 947810 NP_417769.1 CDS rplN NC_000913.2 3445800 3446171 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L14 complement(3445800..3446171) Escherichia coli K12 947809 NP_417770.1 CDS rpsQ NC_000913.2 3446336 3446590 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S17 complement(3446336..3446590) Escherichia coli K12 947808 NP_417771.1 CDS rpmC NC_000913.2 3446590 3446781 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L29 complement(3446590..3446781) Escherichia coli K12 947807 NP_417772.1 CDS rplP NC_000913.2 3446781 3447191 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L16 complement(3446781..3447191) Escherichia coli K12 947806 NP_417773.1 CDS rpsC NC_000913.2 3447204 3447905 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S3 complement(3447204..3447905) Escherichia coli K12 947814 NP_417774.1 CDS rplV NC_000913.2 3447923 3448255 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L22 complement(3447923..3448255) Escherichia coli K12 947813 NP_417775.1 CDS rpsS NC_000913.2 3448270 3448548 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S19 complement(3448270..3448548) Escherichia coli K12 947811 NP_417776.1 CDS rplB NC_000913.2 3448565 3449386 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L2 complement(3448565..3449386) Escherichia coli K12 947820 NP_417777.1 CDS rplW NC_000913.2 3449404 3449706 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L23 complement(3449404..3449706) Escherichia coli K12 947819 NP_417778.1 CDS rplD NC_000913.2 3449703 3450308 R 50S ribosomal subunit protein L4, regulates expression of S10 operon; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; GO_process: translational attenuation [goid 0009386]; 50S ribosomal subunit protein L4 complement(3449703..3450308) Escherichia coli K12 947818 NP_417779.1 CDS rplC NC_000913.2 3450319 3450948 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L3 complement(3450319..3450948) Escherichia coli K12 947817 NP_417780.1 CDS rpsJ NC_000913.2 3450981 3451292 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S10 complement(3450981..3451292) Escherichia coli K12 947816 NP_417781.1 CDS gspB NC_000913.2 3451530 3451949 R calcium-binding protein required for initiation of chromosome replication; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; part of gsp divergon involved in type II protein secretion complement(3451530..3451949) Escherichia coli K12 947826 NP_417782.1 CDS gspA NC_000913.2 3451951 3453420 R putative export protein A for general secretion pathway (GSP); general secretory pathway component, cryptic complement(3451951..3453420) Escherichia coli K12 947825 NP_417783.1 CDS gspC NC_000913.2 3453600 3454415 D general secretory pathway component, cryptic 3453600..3454415 Escherichia coli K12 947824 NP_417784.4 CDS gspD NC_000913.2 3454399 3456351 D general secretory pathway component, cryptic 3454399..3456351 Escherichia coli K12 947822 NP_417785.1 CDS gspE NC_000913.2 3456361 3457842 D general secretory pathway component, cryptic 3456361..3457842 Escherichia coli K12 947823 NP_417786.1 CDS gspF NC_000913.2 3457839 3459035 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; general secretory pathway component, cryptic 3457839..3459035 Escherichia coli K12 947829 NP_417787.1 CDS gspG NC_000913.2 3459045 3459482 D pseudopilin, cryptic, general secretion pathway 3459045..3459482 Escherichia coli K12 947827 NP_417788.1 CDS gspH NC_000913.2 3459490 3459999 D predicted general secretory pathway component, cryptic 3459490..3459999 Escherichia coli K12 947834 NP_417789.4 CDS gspI NC_000913.2 3459996 3460373 D general secretory pathway component, cryptic 3459996..3460373 Escherichia coli K12 947833 NP_417790.1 CDS gspJ NC_000913.2 3460366 3460953 D predicted general secretory pathway component, cryptic 3460366..3460953 Escherichia coli K12 947832 NP_417791.1 CDS gspK NC_000913.2 3460946 3461929 D general secretory pathway component, cryptic 3460946..3461929 Escherichia coli K12 947831 NP_417792.2 CDS gspL NC_000913.2 3461944 3463107 D general secretory pathway component, cryptic 3461944..3463107 Escherichia coli K12 947842 NP_417793.2 CDS gspM NC_000913.2 3463104 3463565 D general secretory pathway component, cryptic 3463104..3463565 Escherichia coli K12 947841 NP_417794.1 CDS gspO NC_000913.2 3463565 3464242 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; bifunctional prepilin leader peptidase/ methylase 3463565..3464242 Escherichia coli K12 947840 NP_417795.1 CDS bfr NC_000913.2 3464271 3464747 R bacterioferrin, an iron storage homoprotein; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; bacterioferritin, iron storage and detoxification protein complement(3464271..3464747) Escherichia coli K12 947839 NP_417796.1 CDS bfd NC_000913.2 3464819 3465013 R GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; bacterioferritin-associated ferredoxin complement(3464819..3465013) Escherichia coli K12 947836 NP_417797.1 CDS chiA NC_000913.2 3465182 3467875 R GO_component: periplasmic space [goid 0042597]; GO_process: macromolecule catabolic process [goid 0009057]; periplasmic endochitinase complement(3465182..3467875) Escherichia coli K12 947837 NP_417798.1 CDS tufA NC_000913.2 3468167 3469351 R GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; GO_process: response to osmotic stress [goid 0006970]; protein chain elongation factor EF-Tu (duplicate of tufB) complement(3468167..3469351) Escherichia coli K12 947838 NP_417799.1 CDS fusA NC_000913.2 3469422 3471536 R GTP-binding protein chain elongation factor EF-G; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; protein chain elongation factor EF-G, GTP-binding complement(3469422..3471536) Escherichia coli K12 947847 NP_417800.1 CDS rpsG NC_000913.2 3471564 3472103 R 30S ribosomal subunit protein S7, initiates assembly; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S7 complement(3471564..3472103) Escherichia coli K12 947846 NP_417801.1 CDS rpsL NC_000913.2 3472200 3472574 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S12 complement(3472200..3472574) Escherichia coli K12 947845 NP_417802.1 CDS yheL NC_000913.2 3472700 3472987 R predicted intracellular sulfur oxidation protein complement(3472700..3472987) Escherichia coli K12 947844 NP_417803.1 CDS yheM NC_000913.2 3472995 3473354 R predicted intraceullular sulfur oxidation protein complement(3472995..3473354) Escherichia coli K12 947853 NP_417804.1 CDS yheN NC_000913.2 3473354 3473740 R predicted intracellular sulfur oxidation protein complement(3473354..3473740) Escherichia coli K12 947852 NP_417805.4 CDS yheO NC_000913.2 3473740 3474462 R predicted DNA-binding transcriptional regulator complement(3473740..3474462) Escherichia coli K12 947851 NP_417806.1 CDS fkpA NC_000913.2 3474629 3475441 R GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) complement(3474629..3475441) Escherichia coli K12 947850 NP_417807.1 CDS slyX NC_000913.2 3475662 3475880 D host factor for lysis of phiX174 infection; conserved protein 3475662..3475880 Escherichia coli K12 947849 NP_417808.1 CDS slyD NC_000913.2 3475929 3476519 R FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); GO_process: protein folding [goid 0006457]; FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) complement(3475929..3476519) Escherichia coli K12 947859 YP_588468.1 CDS yheV NC_000913.2 3476614 3476814 R GO_component: cytoplasm [goid 0005737]; predicted protein complement(3476614..3476814) Escherichia coli K12 1450290 NP_417809.1 CDS kefB NC_000913.2 3476824 3478629 R K+ efflux; NEM-activable K+/H+ antiporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: potassium:hydrogen antiporter activity [goid 0015386]; potassium:proton antiporter complement(3476824..3478629) Escherichia coli K12 947858 NP_417810.1 CDS kefG NC_000913.2 3478629 3479183 R putative NAD(P)H oxidoreductase; component of potassium effux complex with KefB complement(3478629..3479183) Escherichia coli K12 947857 NP_417811.1 CDS yheS NC_000913.2 3479311 3481224 D putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 3479311..3481224 Escherichia coli K12 947856 NP_417812.1 CDS yheT NC_000913.2 3481224 3482246 D predicted hydrolase 3481224..3482246 Escherichia coli K12 947855 NP_417813.1 CDS yheU NC_000913.2 3482240 3482458 D conserved protein 3482240..3482458 Escherichia coli K12 947863 NP_417814.1 CDS prkB NC_000913.2 3482512 3483381 D probable phosphoribulokinase; GO_process: glucose metabolic process [goid 0006006]; predicted phosphoribulokinase 3482512..3483381 Escherichia coli K12 947862 NP_417815.1 CDS yhfA NC_000913.2 3483436 3483840 R conserved protein complement(3483436..3483840) Escherichia coli K12 947860 NP_417816.1 CDS crp NC_000913.2 3484142 3484774 D cyclic AMP receptor protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3484142..3484774 Escherichia coli K12 947867 NP_417817.2 CDS yhfK NC_000913.2 3484813 3486915 D GO_component: cytoplasm [goid 0005737]; GO_process: metabolic process [goid 0008152]; conserved inner membrane protein 3484813..3486915 Escherichia coli K12 947866 NP_417818.1 CDS argD NC_000913.2 3486982 3488202 R acetylornithine delta-aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase complement(3486982..3488202) Escherichia coli K12 947864 NP_417819.1 CDS pabA NC_000913.2 3488288 3488851 R p-aminobenzoate synthetase, component II; GO_process: folic acid biosynthetic process [goid 0046656]; aminodeoxychorismate synthase, subunit II complement(3488288..3488851) Escherichia coli K12 947873 NP_417820.1 CDS fic NC_000913.2 3488883 3489485 R induced in stationary phase, recognized by rpoS, affects cell division; stationary-phase protein, cell division complement(3488883..3489485) Escherichia coli K12 947872 NP_417821.1 CDS yhfG NC_000913.2 3489475 3489642 R predicted protein complement(3489475..3489642) Escherichia coli K12 947871 NP_417822.1 CDS ppiA NC_000913.2 3489747 3490319 R GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase A (rotamase A) complement(3489747..3490319) Escherichia coli K12 947870 NP_417823.1 CDS tsgA NC_000913.2 3490590 3491771 D putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3490590..3491771 Escherichia coli K12 947869 NP_417824.1 CDS nirB NC_000913.2 3492033 3494576 D nitrite reductase (NAD(P)H) subunit; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; nitrite reductase, large subunit, NAD(P)H-binding 3492033..3494576 Escherichia coli K12 947868 NP_417825.1 CDS nirD NC_000913.2 3494573 3494899 D nitrite reductase (NAD(P)H) subunit; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; nitrite reductase, NAD(P)H-binding, small subunit 3494573..3494899 Escherichia coli K12 947881 YP_026212.2 CDS nirC NC_000913.2 3495025 3495831 D nitrite reductase activity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrite transporter 3495025..3495831 Escherichia coli K12 2847757 NP_417827.1 CDS cysG NC_000913.2 3495850 3497223 D uroporphyrinogen III methylase; sirohaeme biosynthesis; fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase 3495850..3497223 Escherichia coli K12 947880 NP_417828.1 CDS yhfL NC_000913.2 3497470 3497637 D conserved secreted peptide 3497470..3497637 Escherichia coli K12 947879 NP_417829.2 CDS frlA NC_000913.2 3497932 3499269 D putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted fructoselysine transporter 3497932..3499269 Escherichia coli K12 947878 NP_417830.4 CDS frlB NC_000913.2 3499290 3500312 D putative transport protein; fructoselysine-6-P-deglycase 3499290..3500312 Escherichia coli K12 947875 YP_026213.1 CDS frlC NC_000913.2 3500362 3501192 D putative fructoselysine or fructoselysine 6-P isomerase; predicted isomerase 3500362..3501192 Escherichia coli K12 2847758 NP_417833.1 CDS frlD NC_000913.2 3501189 3501974 D putative kinase; fructoselysine 6-kinase 3501189..3501974 Escherichia coli K12 947886 NP_417834.6 CDS frlR NC_000913.2 3502074 3502805 D putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3502074..3502805 Escherichia coli K12 947885 NP_417835.1 CDS yhfS NC_000913.2 3502957 3504042 R conserved protein complement(3502957..3504042) Escherichia coli K12 947884 NP_417836.1 CDS yhfT NC_000913.2 3504054 3505358 R putative transport system permease protein; predicted inner membrane protein complement(3504054..3505358) Escherichia coli K12 947883 NP_417837.2 CDS yhfU NC_000913.2 3505370 3505723 R predicted protein complement(3505370..3505723) Escherichia coli K12 947892 NP_417838.1 CDS php NC_000913.2 3505734 3506612 R putative hydrolase; predicted hydrolase complement(3505734..3506612) Escherichia coli K12 947891 NP_417839.1 CDS yhfW NC_000913.2 3506609 3507835 R putative mutase; predicted mutase complement(3506609..3507835) Escherichia coli K12 947890 NP_417840.1 CDS yhfX NC_000913.2 3507835 3508998 R predicted amino acid racemase complement(3507835..3508998) Escherichia coli K12 947889 NP_417841.2 CDS yhfY NC_000913.2 3509082 3509444 R conserved protein complement(3509082..3509444) Escherichia coli K12 947888 YP_026214.1 CDS yhfZ NC_000913.2 3509461 3510366 R conserved protein complement(3509461..3510366) Escherichia coli K12 947897 NP_417843.1 CDS trpS NC_000913.2 3510656 3511660 R tryptophan tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; tryptophanyl-tRNA synthetase complement(3510656..3511660) Escherichia coli K12 947894 NP_417844.1 CDS gph NC_000913.2 3511653 3512411 R GO_process: carbohydrate catabolic process [goid 0016052]; phosphoglycolate phosphatase complement(3511653..3512411) Escherichia coli K12 947895 NP_417845.1 CDS rpe NC_000913.2 3512404 3513081 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; D-ribulose-5-phosphate 3-epimerase complement(3512404..3513081) Escherichia coli K12 947896 NP_417846.1 CDS dam NC_000913.2 3513099 3513935 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; DNA adenine methylase complement(3513099..3513935) Escherichia coli K12 947893 NP_417847.1 CDS damX NC_000913.2 3514042 3515328 R putative membrane protein; interferes with cell division; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted protein complement(3514042..3515328) Escherichia coli K12 947930 NP_417848.1 CDS aroB NC_000913.2 3515420 3516508 R GO_process: chorismate biosynthetic process [goid 0009423]; 3-dehydroquinate synthase complement(3515420..3516508) Escherichia coli K12 947927 YP_026215.2 CDS aroK NC_000913.2 3516565 3517086 R GO_process: chorismate biosynthetic process [goid 0009423]; shikimate kinase I complement(3516565..3517086) Escherichia coli K12 2847759 NP_417850.1 CDS hofQ NC_000913.2 3517487 3518725 R putative transport portein; predicted fimbrial transporter complement(3517487..3518725) Escherichia coli K12 947901 NP_417851.4 CDS hofP NC_000913.2 3518637 3519041 R predicted protein complement(3518637..3519041) Escherichia coli K12 947900 NP_417852.1 CDS hofO NC_000913.2 3519031 3519471 R conserved membrane protein complement(3519031..3519471) Escherichia coli K12 947899 NP_417853.1 CDS hofN NC_000913.2 3519455 3519994 R predicted fimbrial assembly protein complement(3519455..3519994) Escherichia coli K12 947898 NP_417854.4 CDS hofM NC_000913.2 3519994 3520773 R predicted pilus assembly protein complement(3519994..3520773) Escherichia coli K12 947908 NP_417855.4 CDS mrcA NC_000913.2 3520893 3523445 D peptidoglycan synthetase; penicillin-binding protein 1A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase 3520893..3523445 Escherichia coli K12 947907 NP_417856.1 CDS nudE NC_000913.2 3523611 3524171 R ADP-ribose diphosphatase complement(3523611..3524171) Escherichia coli K12 947906 NP_417857.1 CDS yrfF NC_000913.2 3524491 3526626 D putative dehydrogenase; predicted inner membrane protein 3524491..3526626 Escherichia coli K12 947905 NP_417858.4 CDS yrfG NC_000913.2 3526691 3527359 D putative phosphatase; predicted hydrolase 3526691..3527359 Escherichia coli K12 947904 NP_417859.1 CDS hslR NC_000913.2 3527370 3527771 D GO_component: cytoplasm [goid 0005737]; GO_process: response to temperature stimulus [goid 0009266]; ribosome-associated heat shock protein Hsp15 3527370..3527771 Escherichia coli K12 947912 NP_417860.2 CDS hslO NC_000913.2 3527796 3528674 D GO_process: protein folding [goid 0006457]; heat shock protein Hsp33 3527796..3528674 Escherichia coli K12 947178 NP_417861.1 CDS yhgE NC_000913.2 3528737 3530461 R putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein complement(3528737..3530461) Escherichia coli K12 947651 NP_417862.1 CDS pck NC_000913.2 3530840 3532462 D GO_process: gluconeogenesis [goid 0006094]; phosphoenolpyruvate carboxykinase 3530840..3532462 Escherichia coli K12 945667 NP_417863.1 CDS envZ NC_000913.2 3532538 3533890 R protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with OmpR complement(3532538..3533890) Escherichia coli K12 947272 NP_417864.1 CDS ompR NC_000913.2 3533887 3534606 R response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with EnvZ complement(3533887..3534606) Escherichia coli K12 947913 YP_026216.2 CDS greB NC_000913.2 3534834 3535310 D transcription elongation factor and transcript cleavage; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; transcription elongation factor 3534834..3535310 Escherichia coli K12 2847706 NP_417866.4 CDS yhgF NC_000913.2 3535407 3537728 D predicted transcriptional accessory protein 3535407..3537728 Escherichia coli K12 947911 NP_417867.1 CDS feoA NC_000913.2 3538185 3538412 D ferrous iron transport protein A; GO_process: iron ion transport [goid 0006826]; ferrous iron transporter, protein A 3538185..3538412 Escherichia coli K12 947909 NP_417868.1 CDS feoB NC_000913.2 3538429 3540750 D ferrous iron transport protein B; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; fused ferrous iron transporter, protein B: GTP-binding protein/membrane protein 3538429..3540750 Escherichia coli K12 947919 NP_417869.1 CDS feoC NC_000913.2 3540750 3540986 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 3540750..3540986 Escherichia coli K12 947918 NP_417870.1 CDS yhgA NC_000913.2 3541189 3542067 D predicted transposase 3541189..3542067 Escherichia coli K12 947917 NP_417871.1 CDS bioH NC_000913.2 3542096 3542866 R biotin biosynthesis; reaction prior to pimeloyl CoA; GO_process: biotin biosynthetic process [goid 0009102]; carboxylesterase of pimeloyl-CoA synthesis complement(3542096..3542866) Escherichia coli K12 947916 NP_417872.2 CDS gntX NC_000913.2 3542904 3543587 D gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system 3542904..3543587 Escherichia coli K12 947915 NP_417873.1 CDS gntY NC_000913.2 3543646 3544221 D predicted gluconate transport associated protein 3543646..3544221 Escherichia coli K12 947925 YP_026217.1 CDS gntT NC_000913.2 3544581 3545897 D high-affinity transport of gluconate / gluconate permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; gluconate transporter, high-affinity GNT I system 3544581..3545897 Escherichia coli K12 947924 NP_417875.1 CDS malQ NC_000913.2 3546008 3548092 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; 4-alpha-glucanotransferase (amylomaltase) complement(3546008..3548092) Escherichia coli K12 947923 YP_026218.1 CDS malP NC_000913.2 3548102 3550495 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; maltodextrin phosphorylase complement(3548102..3550495) Escherichia coli K12 947922 NP_417877.1 CDS malT NC_000913.2 3551107 3553812 D positive regulator of mal regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein 3551107..3553812 Escherichia coli K12 947921 YP_026219.1 CDS rtcA NC_000913.2 3553855 3554871 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA metabolic process [goid 0016070]; RNA 3'-terminal phosphate cyclase complement(3553855..3554871) Escherichia coli K12 2847707 NP_417879.1 CDS rtcB NC_000913.2 3554875 3556101 R conserved protein complement(3554875..3556101) Escherichia coli K12 947929 NP_417880.1 CDS rtcR NC_000913.2 3556290 3557888 D sigma54-dependent regulator of rtcBA expression; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; sigma 54-dependent transcriptional regulator of rtcBA expression 3556290..3557888 Escherichia coli K12 947928 NP_417881.1 CDS glpR NC_000913.2 3557870 3558628 R repressor of the glp operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(3557870..3558628) Escherichia coli K12 947926 YP_026220.1 CDS glpG NC_000913.2 3558645 3559475 R protein of glp regulon; predicted intramembrane serine protease complement(3558645..3559475) Escherichia coli K12 947936 NP_417883.1 CDS glpE NC_000913.2 3559520 3559846 R rhodanese (thiosulfate:cyanide sulfertransferase); GO_process: anaerobic respiration [goid 0009061]; thiosulfate:cyanide sulfurtransferase (rhodanese) complement(3559520..3559846) Escherichia coli K12 947935 NP_417884.1 CDS glpD NC_000913.2 3560036 3561541 D sn-glycerol-3-phosphate dehydrogenase (aerobic); GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding 3560036..3561541 Escherichia coli K12 947934 b3427 CDS yzgL NC_000913.2 3561747 3562028 R predicted protein; complement(3561747..3562028) Escherichia coli K12 947933 NP_417886.1 CDS glgP NC_000913.2 3562157 3564604 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glycogen phosphorylase complement(3562157..3564604) Escherichia coli K12 947931 NP_417887.1 CDS glgA NC_000913.2 3564623 3566056 R GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glycogen synthase complement(3564623..3566056) Escherichia coli K12 947932 NP_417888.1 CDS glgC NC_000913.2 3566056 3567351 R GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glucose-1-phosphate adenylyltransferase complement(3566056..3567351) Escherichia coli K12 947942 NP_417889.1 CDS glgX NC_000913.2 3567369 3569342 R part of glycogen operon, a glycosyl hydrolase, debranching enzyme; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glycogen debranching enzyme complement(3567369..3569342) Escherichia coli K12 947941 NP_417890.1 CDS glgB NC_000913.2 3569339 3571525 R GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; 1,4-alpha-glucan branching enzyme complement(3569339..3571525) Escherichia coli K12 947940 NP_417891.1 CDS asd NC_000913.2 3571798 3572901 R aspartate-semialdehyde dehydrogenase; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: threonine biosynthetic process [goid 0009088]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: homoserine biosynthetic process [goid 0009090]; aspartate-semialdehyde dehydrogenase, NAD(P)-binding complement(3571798..3572901) Escherichia coli K12 947939 NP_417892.1 CDS yhgN NC_000913.2 3573094 3573687 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted antibiotic transporter 3573094..3573687 Escherichia coli K12 947938 YP_026221.1 CDS gntU NC_000913.2 3573744 3575084 R split gene, low-affinity gluconate transport permease protein in GNT I system; GO_component: organelle inner membrane [goid 0019866]; gluconate transporter, low affinity GNT 1 system complement(3573744..3575084) Escherichia coli K12 2847760 NP_417894.2 CDS gntK NC_000913.2 3575088 3575615 R gluconokinase 2, thermoresistant; gluconate transport, GNT I system; GO_process: glucose metabolic process [goid 0006006]; gluconate kinase 2 complement(3575088..3575615) Escherichia coli K12 947937 YP_026222.1 CDS gntR NC_000913.2 3575754 3576749 R regulator of gluconate (gnt) operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: Entner-Doudoroff pathway [goid 0009255]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(3575754..3576749) Escherichia coli K12 947946 NP_417896.1 CDS yhhW NC_000913.2 3576973 3577668 R predicted protein complement(3576973..3577668) Escherichia coli K12 947945 NP_417897.1 CDS yhhX NC_000913.2 3577791 3578828 R putative regulator; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(3577791..3578828) Escherichia coli K12 947944 NP_417898.1 CDS yhhY NC_000913.2 3579161 3579649 D predicted acetyltransferase 3579161..3579649 Escherichia coli K12 947943 NP_417899.1 CDS yhhZ NC_000913.2 3579886 3581064 D conserved protein 3579886..3581064 Escherichia coli K12 947952 b3443 CDS yrhA NC_000913.2 3581061 3582332 D conserved protein; join(3581061..3581441,3582219..3582332) Escherichia coli K12 947951 NP_417901.1 CDS insA NC_000913.2 3581506 3581781 D KpLE2 phage-like element; IS1 repressor protein InsA 3581506..3581781 Escherichia coli K12 947950 NP_417902.1 CDS insB NC_000913.2 3581700 3582203 D IS1 transposase InsAB' 3581700..3582203 Escherichia coli K12 947949 YP_001165327.1 CDS yrhD NC_000913.2 3582427 3582582 D hypothetical protein 3582427..3582582 Escherichia coli K12 5061521 NP_417903.1 CDS yrhB NC_000913.2 3582782 3583066 D predicted protein 3582782..3583066 Escherichia coli K12 947948 NP_417904.1 CDS ggt NC_000913.2 3583104 3584846 R gamma-glutamyltranspeptidase complement(3583104..3584846) Escherichia coli K12 947947 NP_417905.1 CDS yhhA NC_000913.2 3584966 3585406 D conserved protein 3584966..3585406 Escherichia coli K12 947956 NP_417906.1 CDS ugpQ NC_000913.2 3585393 3586136 R GO_component: cytoplasm [goid 0005737]; GO_process: glycerol metabolic process [goid 0006071]; glycerophosphodiester phosphodiesterase, cytosolic complement(3585393..3586136) Escherichia coli K12 947955 NP_417907.2 CDS ugpC NC_000913.2 3586133 3587203 R ATP-binding component of sn-glycerol 3-phosphate transport system; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit complement(3586133..3587203) Escherichia coli K12 947953 NP_417908.1 CDS ugpE NC_000913.2 3587205 3588050 R sn-glycerol 3-phosphate transport system, integral membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit complement(3587205..3588050) Escherichia coli K12 947959 NP_417909.1 CDS ugpA NC_000913.2 3588047 3588934 R sn-glycerol 3-phosphate transport system, integral membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit complement(3588047..3588934) Escherichia coli K12 947957 NP_417910.1 CDS ugpB NC_000913.2 3589032 3590348 R sn-glycerol 3-phosphate transport system; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit complement(3589032..3590348) Escherichia coli K12 947962 NP_417911.4 CDS livF NC_000913.2 3590747 3591460 R ATP-binding component of leucine transport; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit complement(3590747..3591460) Escherichia coli K12 947961 NP_417912.1 CDS livG NC_000913.2 3591462 3592229 R ATP-binding component of high-affinity branched-chain amino acid transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit complement(3591462..3592229) Escherichia coli K12 947967 NP_417913.1 CDS livM NC_000913.2 3592226 3593503 R high-affinity branched-chain amino acid transport; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit complement(3592226..3593503) Escherichia coli K12 947966 NP_417914.1 CDS livH NC_000913.2 3593500 3594426 R high-affinity branched-chain amino acid transport system; membrane component; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit complement(3593500..3594426) Escherichia coli K12 947965 NP_417915.1 CDS livK NC_000913.2 3594474 3595583 R high-affinity leucine-specific transport system; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: leucine biosynthetic process [goid 0009098]; leucine transporter subunit complement(3594474..3595583) Escherichia coli K12 947964 NP_417916.1 CDS yhhK NC_000913.2 3596007 3596390 D conserved protein 3596007..3596390 Escherichia coli K12 947963 YP_026223.1 CDS livJ NC_000913.2 3596578 3597681 R high-affinity branched-chain amino acid transport protein (ABC superfamily, peri_bind); periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit complement(3596578..3597681) Escherichia coli K12 947971 NP_417918.1 CDS rpoH NC_000913.2 3597952 3598806 R RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; RNA polymerase, sigma 32 (sigma H) factor complement(3597952..3598806) Escherichia coli K12 947970 NP_417919.1 CDS ftsX NC_000913.2 3599051 3600109 R cell division membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(3599051..3600109) Escherichia coli K12 947969 NP_417920.1 CDS ftsE NC_000913.2 3600102 3600770 R ATP-binding component of a membrane-associated complex involved in cell division; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily complement(3600102..3600770) Escherichia coli K12 947968 NP_417921.1 CDS ftsY NC_000913.2 3600773 3602266 R cell division membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein complement(3600773..3602266) Escherichia coli K12 947978 NP_417922.1 CDS rsmD NC_000913.2 3602416 3603012 D predicted methyltransferase 3602416..3603012 Escherichia coli K12 947977 NP_417923.1 CDS yhhL NC_000913.2 3603002 3603271 D conserved inner membrane protein 3603002..3603271 Escherichia coli K12 947976 NP_417924.1 CDS yhhM NC_000913.2 3603274 3603633 R putative receptor; conserved protein complement(3603274..3603633) Escherichia coli K12 947975 NP_417925.1 CDS yhhN NC_000913.2 3603774 3604400 D putative enzyme; conserved inner membrane protein 3603774..3604400 Escherichia coli K12 947973 NP_417926.1 CDS zntA NC_000913.2 3604474 3606672 D zinc-transporting ATPase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; GO_process: xenobiotic metabolic process [goid 0006805]; zinc, cobalt and lead efflux system 3604474..3606672 Escherichia coli K12 947972 NP_417927.1 CDS sirA NC_000913.2 3606774 3607019 R small protein required for cell growth; affects RpoS stability small ubiquitous RNA-binding protein required for normal growth, cytoplasmic; conserved protein required for cell growth complement(3606774..3607019) Escherichia coli K12 947974 NP_417928.1 CDS yhhQ NC_000913.2 3607240 3607905 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3607240..3607905 Escherichia coli K12 947984 NP_417929.4 CDS dcrB NC_000913.2 3607978 3608535 D periplasmic protein 3607978..3608535 Escherichia coli K12 947983 NP_417930.2 CDS yhhS NC_000913.2 3608539 3609756 R putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(3608539..3609756) Escherichia coli K12 947982 NP_417931.4 CDS yhhT NC_000913.2 3609888 3610937 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein 3609888..3610937 Escherichia coli K12 947980 NP_417932.1 CDS acpT NC_000913.2 3610992 3611579 D holo-(acyl carrier protein) synthase 2 3610992..3611579 Escherichia coli K12 947979 NP_417933.1 CDS nikA NC_000913.2 3611690 3613264 D periplasmic binding protein for nickel; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: taxis [goid 0042330]; nickel transporter subunit 3611690..3613264 Escherichia coli K12 947981 NP_417934.1 CDS nikB NC_000913.2 3613264 3614208 D transport of nickel, membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; nickel transporter subunit 3613264..3614208 Escherichia coli K12 947986 NP_417935.1 CDS nikC NC_000913.2 3614205 3615038 D transport of nickel, membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; nickel transporter subunit 3614205..3615038 Escherichia coli K12 947990 NP_417936.1 CDS nikD NC_000913.2 3615038 3615802 D ATP-binding protein of nickel transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; nickel transporter subunit 3615038..3615802 Escherichia coli K12 947989 NP_417937.1 CDS nikE NC_000913.2 3615799 3616605 D ATP-binding protein of nickel transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; nickel transporter subunit 3615799..3616605 Escherichia coli K12 947987 NP_417938.1 CDS nikR NC_000913.2 3616611 3617012 D GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, Ni-binding 3616611..3617012 Escherichia coli K12 947995 YP_026224.1 CDS rhsB NC_000913.2 3617215 3621450 D rhsB protein in rhs element; rhsB element core protein RshB 3617215..3621450 Escherichia coli K12 947994 NP_417940.2 CDS yhhH NC_000913.2 3621422 3621805 D predicted protein 3621422..3621805 Escherichia coli K12 947993 b4552 CDS yrhC NC_000913.2 3621910 3622260 D predicted protein fragment (pseudogene); GO_component: cytoplasm [goid 0005737]; 3621910..3622260 Escherichia coli K12 1450291 NP_417941.1 CDS yhhI NC_000913.2 3622401 3623537 D putative receptor; predicted transposase 3622401..3623537 Escherichia coli K12 947992 NP_417942.5 CDS yhhJ NC_000913.2 3623702 3624829 R putative transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily complement(3623702..3624829) Escherichia coli K12 947991 YP_026225.1 CDS rbbA NC_000913.2 3624826 3627561 R ribosome-associated ATPase, ATP-binding domain (N-terminal); GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein complement(3624826..3627561) Escherichia coli K12 947998 NP_417944.1 CDS yhiI NC_000913.2 3627558 3628625 R putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted HlyD family secretion protein complement(3627558..3628625) Escherichia coli K12 948003 NP_417945.1 CDS yhiJ NC_000913.2 3628991 3630613 R predicted protein complement(3628991..3630613) Escherichia coli K12 948001 b4660 CDS yhiL NC_000913.2 3630875 3632481 R predicted protein; complement(join(3630875..3631288,3631289..3632481)) Escherichia coli K12 947999 NP_417948.3 CDS yhiM NC_000913.2 3632822 3633916 D conserved inner membrane protein 3632822..3633916 Escherichia coli K12 947997 NP_417949.1 CDS yhiN NC_000913.2 3634231 3635433 R predicted oxidoreductase with FAD/NAD(P)-binding domain complement(3634231..3635433) Escherichia coli K12 947996 NP_417950.1 CDS pitA NC_000913.2 3635665 3637164 D low-affinity phosphate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter, low-affinity 3635665..3637164 Escherichia coli K12 948009 NP_417951.1 CDS uspB NC_000913.2 3637408 3637743 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to stress [goid 0006950]; GO_process: xenobiotic metabolic process [goid 0006805]; predicted universal stress (ethanol tolerance) protein B complement(3637408..3637743) Escherichia coli K12 948008 NP_417952.1 CDS uspA NC_000913.2 3638134 3638568 D universal stress protein; broad regulatory function?; GO_component: cytoplasm [goid 0005737]; GO_process: response to stress [goid 0006950]; universal stress global response regulator 3638134..3638568 Escherichia coli K12 948007 NP_417953.1 CDS yhiP NC_000913.2 3638885 3640354 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3638885..3640354 Escherichia coli K12 948006 NP_417954.1 CDS yhiQ NC_000913.2 3640403 3641155 R predicted SAM-dependent methyltransferase complement(3640403..3641155) Escherichia coli K12 948005 NP_417955.1 CDS prlC NC_000913.2 3641163 3643205 R oligopeptidase A complement(3641163..3643205) Escherichia coli K12 948016 NP_417956.1 CDS yhiR NC_000913.2 3643408 3644250 D predicted DNA (exogenous) processing protein 3643408..3644250 Escherichia coli K12 948012 NP_417957.1 CDS gor NC_000913.2 3644322 3645674 D GO_component: cytoplasm [goid 0005737]; glutathione oxidoreductase 3644322..3645674 Escherichia coli K12 948014 YP_001165328.1 CDS dinQ NC_000913.2 3645728 3645856 R Damage inducible, function unknown complement(3645728..3645856) Escherichia coli K12 5061522 NP_417958.1 CDS arsR NC_000913.2 3646551 3646904 D transcriptional repressor of chromosomal ars operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor 3646551..3646904 Escherichia coli K12 948013 NP_417959.4 CDS arsB NC_000913.2 3646958 3648247 D arsenical pump membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: xenobiotic metabolic process [goid 0006805]; arsenite/antimonite transporter 3646958..3648247 Escherichia coli K12 948011 NP_417960.1 CDS arsC NC_000913.2 3648260 3648685 D GO_process: response to drug [goid 0042493]; arsenate reductase 3648260..3648685 Escherichia coli K12 948018 b3504 CDS yhiS NC_000913.2 3649314 3651736 D predicted protein; join(3649314..3650054,3651254..3651736) Escherichia coli K12 948017 NP_417962.1 CDS insH NC_000913.2 3650205 3651221 R IS5 transposase and trans-activator complement(3650205..3651221) Escherichia coli K12 948015 NP_417963.4 CDS slp NC_000913.2 3651984 3652550 D outer membrane protein induced after carbon starvation; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: response to starvation [goid 0042594]; outer membrane lipoprotein 3651984..3652550 Escherichia coli K12 948022 NP_417964.1 CDS dctR NC_000913.2 3652706 3653236 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding ranscriptional regulator 3652706..3653236 Escherichia coli K12 948021 NP_417965.1 CDS yhiD NC_000913.2 3653278 3653925 R putative transport ATPase; predicted Mg(2+) transport ATPase inner membrane protein complement(3653278..3653925) Escherichia coli K12 948019 NP_417966.4 CDS hdeB NC_000913.2 3653989 3654315 R acid-resistance protein complement(3653989..3654315) Escherichia coli K12 948026 NP_417967.1 CDS hdeA NC_000913.2 3654431 3654763 R stress response protein acid-resistance protein complement(3654431..3654763) Escherichia coli K12 948025 NP_417968.1 CDS hdeD NC_000913.2 3655018 3655590 D acid-resistance membrane protein 3655018..3655590 Escherichia coli K12 948024 NP_417969.1 CDS gadE NC_000913.2 3656389 3656916 D DNA-binding transcriptional activator 3656389..3656916 Escherichia coli K12 948023 NP_417970.1 CDS mdtE NC_000913.2 3657255 3658412 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug resistance efflux transporter 3657255..3658412 Escherichia coli K12 948031 NP_417971.1 CDS mdtF NC_000913.2 3658437 3661550 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; multidrug transporter, RpoS-dependent 3658437..3661550 Escherichia coli K12 948030 NP_417972.1 CDS gadW NC_000913.2 3661913 3662641 R putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(3661913..3662641) Escherichia coli K12 948029 NP_417973.1 CDS gadX NC_000913.2 3663009 3663833 R GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(3663009..3663833) Escherichia coli K12 948028 NP_417974.1 CDS gadA NC_000913.2 3664203 3665603 R glutamate decarboxylase isozyme; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amino acid metabolic process [goid 0006520]; glutamate decarboxylase A, PLP-dependent complement(3664203..3665603) Escherichia coli K12 948027 NP_417975.1 CDS yhjA NC_000913.2 3665814 3667211 R putative cytochrome C peroxidase; GO_process: cytochrome complex assembly [goid 0017004]; predicted cytochrome C peroxidase complement(3665814..3667211) Escherichia coli K12 948038 NP_417976.1 CDS treF NC_000913.2 3667615 3669264 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; cytoplasmic trehalase 3667615..3669264 Escherichia coli K12 948037 NP_417977.1 CDS yhjB NC_000913.2 3669315 3669917 R putative regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding response regulator in two-component regulatory system complement(3669315..3669917) Escherichia coli K12 948036 NP_417978.2 CDS yhjC NC_000913.2 3670437 3671336 D putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3670437..3671336 Escherichia coli K12 948035 NP_417979.1 CDS yhjD NC_000913.2 3671385 3672398 D conserved inner membrane protein 3671385..3672398 Escherichia coli K12 948033 NP_417980.1 CDS yhjE NC_000913.2 3672809 3674131 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3672809..3674131 Escherichia coli K12 948032 NP_417981.1 CDS yhjG NC_000913.2 3674313 3676388 R predicted outer membrane biogenesis protein complement(3674313..3676388) Escherichia coli K12 948043 NP_417982.2 CDS yhjH NC_000913.2 3676443 3677210 R EAL domain containing protein involved in flagellar function complement(3676443..3677210) Escherichia coli K12 948042 NP_417983.2 CDS kdgK NC_000913.2 3677442 3678371 D GO_process: carbohydrate catabolic process [goid 0016052]; ketodeoxygluconokinase 3677442..3678371 Escherichia coli K12 948041 NP_417984.1 CDS yhjJ NC_000913.2 3678467 3679963 R predicted zinc-dependent peptidase complement(3678467..3679963) Escherichia coli K12 948040 NP_417985.1 CDS dctA NC_000913.2 3680184 3681470 R uptake of C4-dicarboxylic acids; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: sodium:dicarboxylate/tricarboxylate symporter activity [goid 0005311]; GO_process: carbohydrate catabolic process [goid 0016052]; C4-dicarboxylic acid, orotate and citrate transporter complement(3680184..3681470) Escherichia coli K12 948039 NP_417986.3 CDS yhjK NC_000913.2 3681653 3683608 R predicted diguanylate cyclase complement(3681653..3683608) Escherichia coli K12 948048 YP_026226.3 CDS bcsC NC_000913.2 3683723 3687145 R putative oxidoreductase subunit; cellulose synthase subunit complement(3683723..3687145) Escherichia coli K12 948047 NP_417988.1 CDS bcsZ NC_000913.2 3687178 3688284 R GO_component: extracellular region [goid 0005576]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; endo-1,4-D-glucanase complement(3687178..3688284) Escherichia coli K12 948046 NP_417989.1 CDS bcsB NC_000913.2 3688291 3690630 R regulator of cellulose synthase, cyclic di-GMP binding complement(3688291..3690630) Escherichia coli K12 948045 NP_417990.4 CDS bcsA NC_000913.2 3690641 3693259 R putative cellulose synthase; cellulose synthase, catalytic subunit complement(3690641..3693259) Escherichia coli K12 948053 b3534 CDS yhjQ NC_000913.2 3693256 3694008 R cell division protein (chromosome partitioning ATPase) (pseudogene); complement(3693256..3694008) Escherichia coli K12 948052 NP_417992.1 CDS yhjR NC_000913.2 3694020 3694208 R conserved protein complement(3694020..3694208) Escherichia coli K12 948051 NP_417993.1 CDS bcsE NC_000913.2 3694481 3696052 D conserved hypothetical protein Salmonella ortholog implicated in the biosynthesis of cellulose, although the precise role remains unclear; conserved protein 3694481..3696052 Escherichia coli K12 948050 NP_417994.2 CDS bcsF NC_000913.2 3696049 3696240 D predicted protein 3696049..3696240 Escherichia coli K12 948059 NP_417995.1 CDS bcsG NC_000913.2 3696237 3697916 D predicted inner membrane protein 3696237..3697916 Escherichia coli K12 948058 YP_026227.1 CDS ldrD NC_000913.2 3698003 3698110 R small toxic polypeptide; toxic polypeptide, small complement(3698003..3698110) Escherichia coli K12 2847730 NP_417996.1 CDS yhjV NC_000913.2 3698586 3699857 D putative transporter protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3698586..3699857 Escherichia coli K12 948057 NP_417997.1 CDS dppF NC_000913.2 3699887 3700891 R putative ATP-binding component of dipeptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; dipeptide transporter complement(3699887..3700891) Escherichia coli K12 948056 NP_417998.1 CDS dppD NC_000913.2 3700888 3701871 R putative ATP-binding component of dipeptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; dipeptide transporter complement(3700888..3701871) Escherichia coli K12 948065 NP_417999.1 CDS dppC NC_000913.2 3701882 3702784 R dipeptide transport system permease protein 2; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; dipeptide transporter complement(3701882..3702784) Escherichia coli K12 948064 NP_418000.1 CDS dppB NC_000913.2 3702794 3703813 R dipeptide transport system permease protein 1; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; dipeptide transporter complement(3702794..3703813) Escherichia coli K12 948063 NP_418001.1 CDS dppA NC_000913.2 3704121 3705728 R dipeptide transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; dipeptide transporter complement(3704121..3705728) Escherichia coli K12 948062 NP_418002.2 CDS eptB NC_000913.2 3706807 3708498 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted metal dependent hydrolase complement(3706807..3708498) Escherichia coli K12 948068 NP_418003.1 CDS yhjX NC_000913.2 3708822 3710030 R putative resistance protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted transporter complement(3708822..3710030) Escherichia coli K12 948066 NP_418004.4 CDS yhjY NC_000913.2 3710259 3710957 R putative lipase; GO_process: fatty acid oxidation [goid 0019395]; conserved protein complement(3710259..3710957) Escherichia coli K12 948073 NP_418005.1 CDS tag NC_000913.2 3711115 3711678 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; 3-methyl-adenine DNA glycosylase I, constitutive 3711115..3711678 Escherichia coli K12 947137 NP_418006.1 CDS yiaC NC_000913.2 3711675 3712115 D predicted acyltransferase with acyl-CoA N-acyltransferase domain 3711675..3712115 Escherichia coli K12 946460 NP_418007.3 CDS bisC NC_000913.2 3712084 3714417 R GO_process: biotin biosynthetic process [goid 0009102]; biotin sulfoxide reductase complement(3712084..3714417) Escherichia coli K12 946915 YP_026228.1 CDS yiaD NC_000913.2 3714570 3715229 D putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane lipoprotein 3714570..3715229 Escherichia coli K12 948075 NP_418009.2 CDS ghrB NC_000913.2 3715333 3716307 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 2-keto-D-gluconate reductase (glyoxalate reductase) (2-ketoaldonate reductase) 3715333..3716307 Escherichia coli K12 948074 NP_418010.2 CDS yiaF NC_000913.2 3716357 3717067 R conserved protein complement(3716357..3717067) Escherichia coli K12 948072 NP_418011.1 CDS yiaG NC_000913.2 3717501 3717791 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 3717501..3717791 Escherichia coli K12 948071 NP_418012.1 CDS cspA NC_000913.2 3718072 3718284 D cold shock protein 7.4, transcriptional activator of hns; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; major cold shock protein 3718072..3718284 Escherichia coli K12 948070 b4647 CDS mokA NC_000913.2 3718471 3718655 R pseudogene, overlapping regulatory peptide, enables hokB; complement(3718471..3718655) Escherichia coli K12 5625573 YP_026229.1 CDS hokA NC_000913.2 3718471 3718623 R small toxic membrane polypeptide IS150 insertion and apparent 39 bp deletion disrupt the associated mokA and sokA genes; toxic polypeptide, small complement(3718471..3718623) Escherichia coli K12 2847732 NP_418014.1 CDS insJ NC_000913.2 3718703 3719224 D IS150 protein InsA 3718703..3719224 Escherichia coli K12 948082 NP_418015.1 CDS insK NC_000913.2 3719221 3720072 D IS150 conserved protein InsB 3719221..3720072 Escherichia coli K12 948081 NP_418016.1 CDS glyS NC_000913.2 3720351 3722420 R GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glycine tRNA synthetase, beta subunit complement(3720351..3722420) Escherichia coli K12 948080 NP_418017.1 CDS glyQ NC_000913.2 3722430 3723341 R GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glycine tRNA synthetase, alpha subunit complement(3722430..3723341) Escherichia coli K12 948079 YP_588469.1 CDS ysaB NC_000913.2 3723436 3723735 R GO_component: cell outer membrane [goid 0009279]; predicted protein complement(3723436..3723735) Escherichia coli K12 1450292 NP_418018.1 CDS wecH NC_000913.2 3723910 3724905 D conserved inner membrane protein 3723910..3724905 Escherichia coli K12 948077 NP_418019.4 CDS yiaA NC_000913.2 3724947 3725384 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(3724947..3725384) Escherichia coli K12 948078 NP_418020.2 CDS yiaB NC_000913.2 3725430 3725771 R conserved inner membrane protein complement(3725430..3725771) Escherichia coli K12 948152 NP_418021.1 CDS xylB NC_000913.2 3725940 3727394 R GO_process: carbohydrate catabolic process [goid 0016052]; xylulokinase complement(3725940..3727394) Escherichia coli K12 948133 NP_418022.1 CDS xylA NC_000913.2 3727466 3728788 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glucose metabolic process [goid 0006006]; D-xylose isomerase complement(3727466..3728788) Escherichia coli K12 948141 NP_418023.1 CDS xylF NC_000913.2 3729154 3730146 D xylose binding protein transport system; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; D-xylose transporter subunit 3729154..3730146 Escherichia coli K12 948090 NP_418024.1 CDS xylG NC_000913.2 3730224 3731765 D putative ATP-binding protein of xylose transport system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused D-xylose transporter subunits of ABC superfamily: ATP-binding components 3730224..3731765 Escherichia coli K12 948127 NP_418025.1 CDS xylH NC_000913.2 3731743 3732924 D putative xylose transport, membrane component; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-xylose transporter subunit 3731743..3732924 Escherichia coli K12 948083 NP_418026.1 CDS xylR NC_000913.2 3733002 3734180 D putative regulator of xyl operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, xylose-binding 3733002..3734180 Escherichia coli K12 948086 YP_026230.1 CDS bax NC_000913.2 3734376 3735200 R putative ATP-binding protein; conserved protein complement(3734376..3735200) Escherichia coli K12 948089 NP_418028.1 CDS malS NC_000913.2 3735520 3737550 D GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; GO_process: proteolysis [goid 0006508]; alpha-amylase 3735520..3737550 Escherichia coli K12 948088 YP_026231.1 CDS avtA NC_000913.2 3737728 3738981 D alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C; GO_process: alanine biosynthetic process [goid 0006523]; valine-pyruvate aminotransferase 3737728..3738981 Escherichia coli K12 948087 NP_418030.1 CDS ysaA NC_000913.2 3739132 3739605 R predicted hydrogenase, 4Fe-4S ferredoxin-type component complement(3739132..3739605) Escherichia coli K12 948085 NP_418031.1 CDS yiaJ NC_000913.2 3739707 3740555 R GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional repressor complement(3739707..3740555) Escherichia coli K12 948084 NP_418032.1 CDS yiaK NC_000913.2 3740756 3741754 D putative dehydrogenase; 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent 3740756..3741754 Escherichia coli K12 948096 NP_418033.1 CDS yiaL NC_000913.2 3741766 3742233 D putative lipase; conserved protein 3741766..3742233 Escherichia coli K12 948094 NP_418034.1 CDS yiaM NC_000913.2 3742351 3742824 D predicted transporter 3742351..3742824 Escherichia coli K12 948093 YP_026232.1 CDS yiaN NC_000913.2 3742827 3744104 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3742827..3744104 Escherichia coli K12 948092 NP_418036.1 CDS yiaO NC_000913.2 3744117 3745103 D putative solute-binding transport protein; predicted transporter 3744117..3745103 Escherichia coli K12 948091 NP_418037.1 CDS lyx NC_000913.2 3745107 3746603 D L-xylulose kinase, cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; L-xylulose kinase 3745107..3746603 Escherichia coli K12 948101 NP_418038.1 CDS sgbH NC_000913.2 3746600 3747262 D probable 3-hexulose 6-phosphate synthase; 3-keto-L-gulonate 6-phosphate decarboxylase 3746600..3747262 Escherichia coli K12 948098 NP_418039.2 CDS sgbU NC_000913.2 3747255 3748115 D predicted L-xylulose 5-phosphate 3-epimerase 3747255..3748115 Escherichia coli K12 948100 NP_418040.1 CDS sgbE NC_000913.2 3748109 3748804 D GO_process: carbohydrate catabolic process [goid 0016052]; L-ribulose-5-phosphate 4-epimerase 3748109..3748804 Escherichia coli K12 948099 b4648 CDS ysaC NC_000913.2 3748836 3748937 R pseudogene; complement(3748836..3748937) Escherichia coli K12 5625574 b4649 CDS ysaD NC_000913.2 3748941 3749132 D pseudogene, internal sequence remnant; 3748941..3749132 Escherichia coli K12 5625575 NP_418041.1 CDS yiaT NC_000913.2 3749151 3749891 R putative outer membrane protein; GO_component: cell outer membrane [goid 0009279]; predicted protein complement(3749151..3749891) Escherichia coli K12 948097 NP_418042.1 CDS yiaU NC_000913.2 3750015 3750989 D putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3750015..3750989 Escherichia coli K12 948107 NP_418043.1 CDS yiaV NC_000913.2 3750986 3752122 R putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane fusion protein (MFP) component of efflux pump, signal anchor complement(3750986..3752122) Escherichia coli K12 948106 NP_418044.1 CDS yiaW NC_000913.2 3752128 3752451 R conserved inner membrane protein complement(3752128..3752451) Escherichia coli K12 948105 NP_418045.4 CDS aldB NC_000913.2 3752996 3754534 R aldehyde dehydrogenase B (lactaldehyde dehydrogenase); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: methylglyoxal metabolic process [goid 0009438]; aldehyde dehydrogenase B complement(3752996..3754534) Escherichia coli K12 948104 YP_026233.1 CDS yiaY NC_000913.2 3754699 3755850 R putative oxidoreductase; predicted Fe-containing alcohol dehydrogenase complement(3754699..3755850) Escherichia coli K12 948102 NP_418047.1 CDS selB NC_000913.2 3756040 3757884 R GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; selenocysteinyl-tRNA-specific translation factor complement(3756040..3757884) Escherichia coli K12 948103 NP_418048.1 CDS selA NC_000913.2 3757881 3759272 R selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase; GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: RNA modification [goid 0009451]; selenocysteine synthase complement(3757881..3759272) Escherichia coli K12 948124 NP_418049.1 CDS yibF NC_000913.2 3759370 3759978 R putative S-transferase; predicted glutathione S-transferase complement(3759370..3759978) Escherichia coli K12 948113 NP_418050.1 CDS rhsA NC_000913.2 3760206 3764339 D rhsA protein in rhs element; rhsA element core protein RshA 3760206..3764339 Escherichia coli K12 948120 NP_418051.1 CDS yibA NC_000913.2 3764360 3765202 D lyase containing HEAT-repeat 3764360..3765202 Escherichia coli K12 948108 b3595 CDS yibJ NC_000913.2 3765244 3766188 D predicted Rhs-family protein; 3765244..3766188 Escherichia coli K12 948112 NP_418053.1 CDS yibG NC_000913.2 3766200 3766661 D conserved protein 3766200..3766661 Escherichia coli K12 948111 b4650 CDS yibS NC_000913.2 3766662 3766913 D pseudogene, Rhs family; 3766662..3766913 Escherichia coli K12 5625576 b4651 CDS yibW NC_000913.2 3766915 3767279 D pseudogene, rhsA-linked; join(3766915..3766998,3767016..3767279) Escherichia coli K12 5625577 YP_001165329.1 CDS yibV NC_000913.2 3767368 3767703 D hypothetical protein, no homologs 3767368..3767703 Escherichia coli K12 5061524 b4652 CDS yibU NC_000913.2 3767971 3768169 D pseudogene, H repeat-associated protein; join(3767971..3768057,3768056..3768169) Escherichia coli K12 5625578 NP_418054.1 CDS yibH NC_000913.2 3768266 3769402 R putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted protein complement(3768266..3769402) Escherichia coli K12 948110 NP_418055.1 CDS yibI NC_000913.2 3769405 3769767 R predicted inner membrane protein complement(3769405..3769767) Escherichia coli K12 948109 NP_418056.1 CDS mtlA NC_000913.2 3770304 3772217 D PTS system, mannitol-specific enzyme IIABC components; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components 3770304..3772217 Escherichia coli K12 948118 NP_418057.1 CDS mtlD NC_000913.2 3772447 3773595 D mannitol-1-phosphate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; mannitol-1-phosphate dehydrogenase, NAD(P)-binding 3772447..3773595 Escherichia coli K12 948117 NP_418058.1 CDS mtlR NC_000913.2 3773595 3774182 D repressor for mtl; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding repressor 3773595..3774182 Escherichia coli K12 948116 YP_588470.1 CDS yibT NC_000913.2 3774194 3774403 R GO_component: cytoplasm [goid 0005737]; predicted protein complement(3774194..3774403) Escherichia coli K12 1450299 NP_418059.1 CDS yibL NC_000913.2 3774688 3775050 D conserved protein 3774688..3775050 Escherichia coli K12 948115 NP_418060.1 CDS lldP NC_000913.2 3775422 3777077 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; L-lactate permease 3775422..3777077 Escherichia coli K12 948114 NP_418061.1 CDS lldR NC_000913.2 3777077 3777853 D transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: aerobic respiration [goid 0009060]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3777077..3777853 Escherichia coli K12 948122 NP_418062.1 CDS lldD NC_000913.2 3777850 3779040 D L-lactate dehydrogenase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; L-lactate dehydrogenase, FMN-linked 3777850..3779040 Escherichia coli K12 948121 NP_418063.1 CDS yibK NC_000913.2 3779238 3779711 D GO_process: RNA modification [goid 0009451]; predicted rRNA methylase 3779238..3779711 Escherichia coli K12 948119 NP_418064.1 CDS cysE NC_000913.2 3779764 3780585 R GO_component: cytoplasm [goid 0005737]; GO_process: cysteine biosynthetic process [goid 0019344]; serine acetyltransferase complement(3779764..3780585) Escherichia coli K12 948126 NP_418065.1 CDS gpsA NC_000913.2 3780665 3781684 R GO_component: cytoplasm [goid 0005737]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phosphorus metabolic process [goid 0006793]; glycerol-3-phosphate dehydrogenase (NAD+) complement(3780665..3781684) Escherichia coli K12 948125 NP_418066.1 CDS secB NC_000913.2 3781684 3782151 R protein export; molecular chaperone; may bind to signel sequence; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; protein export chaperone complement(3781684..3782151) Escherichia coli K12 948123 NP_418067.1 CDS grxC NC_000913.2 3782214 3782465 R glutaredoxin 3 complement(3782214..3782465) Escherichia coli K12 948132 NP_418068.1 CDS yibN NC_000913.2 3782607 3783038 R predicted rhodanese-related sulfurtransferase complement(3782607..3783038) Escherichia coli K12 948131 NP_418069.1 CDS gpmM NC_000913.2 3783283 3784827 D putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; phosphoglycero mutase III, cofactor-independent 3783283..3784827 Escherichia coli K12 948130 NP_418070.6 CDS envC NC_000913.2 3784861 3786120 D putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; protease with a role in cell division 3784861..3786120 Escherichia coli K12 948129 NP_418071.4 CDS yibQ NC_000913.2 3786124 3787083 D predicted polysaccharide deacetylase 3786124..3787083 Escherichia coli K12 948128 NP_418072.1 CDS yibD NC_000913.2 3787070 3788104 R putative regulator; predicted glycosyl transferase complement(3787070..3788104) Escherichia coli K12 948140 NP_418073.1 CDS tdh NC_000913.2 3788343 3789368 R threonine dehydrogenase; GO_process: amino acid catabolic process [goid 0009063]; threonine 3-dehydrogenase, NAD(P)-binding complement(3788343..3789368) Escherichia coli K12 948139 NP_418074.1 CDS kbl NC_000913.2 3789378 3790574 R 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase); GO_process: amino acid catabolic process [goid 0009063]; glycine C-acetyltransferase complement(3789378..3790574) Escherichia coli K12 948138 NP_418075.2 CDS htrL NC_000913.2 3790849 3791706 R involved in lipopolysaccharide biosynthesis; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; predicted protein complement(3790849..3791706) Escherichia coli K12 948137 NP_418076.1 CDS rfaD NC_000913.2 3792010 3792942 D ADP-L-glycero-D-mannoheptose-6-epimerase; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: NAD biosynthetic process [goid 0009435]; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding 3792010..3792942 Escherichia coli K12 948134 NP_418077.1 CDS rfaF NC_000913.2 3792952 3793998 D ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; ADP-heptose:LPS heptosyltransferase II 3792952..3793998 Escherichia coli K12 948135 NP_418078.1 CDS rfaC NC_000913.2 3794002 3794961 D heptosyl transferase I; lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; ADP-heptose:LPS heptosyl transferase I 3794002..3794961 Escherichia coli K12 948136 NP_418079.1 CDS rfaL NC_000913.2 3794971 3796230 D O-antigen ligase; lipopolysaccharide core biosynthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; O-antigen ligase 3794971..3796230 Escherichia coli K12 948148 NP_418080.1 CDS waaU NC_000913.2 3796262 3797335 R probably hexose transferase; lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis complement(3796262..3797335) Escherichia coli K12 948147 NP_418081.1 CDS rfaZ NC_000913.2 3797368 3798219 R lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein complement(3797368..3798219) Escherichia coli K12 948146 NP_418082.1 CDS rfaY NC_000913.2 3798290 3798988 R lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein complement(3798290..3798988) Escherichia coli K12 948145 NP_418083.1 CDS rfaJ NC_000913.2 3799006 3800022 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase complement(3799006..3800022) Escherichia coli K12 948142 NP_418084.1 CDS rfaI NC_000913.2 3800062 3801081 R UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase complement(3800062..3801081) Escherichia coli K12 948143 NP_418085.1 CDS rfaB NC_000913.2 3801081 3802190 R GO_function: cell surface antigen activity, host-interacting [goid 0042280]; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase complement(3801081..3802190) Escherichia coli K12 948144 NP_418086.1 CDS rfaS NC_000913.2 3802204 3803139 R lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein complement(3802204..3803139) Escherichia coli K12 948151 NP_418087.1 CDS rfaP NC_000913.2 3803176 3803973 R lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS co; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; kinase that phosphorylates core heptose of lipopolysaccharide complement(3803176..3803973) Escherichia coli K12 948150 NP_418088.1 CDS rfaG NC_000913.2 3803966 3805090 R glucosyltransferase I; lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: SOS response [goid 0009432]; glucosyltransferase I complement(3803966..3805090) Escherichia coli K12 948149 NP_418089.1 CDS rfaQ NC_000913.2 3805087 3806121 R lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein complement(3805087..3806121) Escherichia coli K12 948155 NP_418090.1 CDS waaA NC_000913.2 3806563 3807840 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: K antigen biosynthetic process [goid 0009248]; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) 3806563..3807840 Escherichia coli K12 949048 NP_418091.1 CDS coaD NC_000913.2 3807848 3808327 D GO_function: cell surface antigen activity, host-interacting [goid 0042280]; pantetheine-phosphate adenylyltransferase 3807848..3808327 Escherichia coli K12 947386 NP_418092.1 CDS mutM NC_000913.2 3808366 3809175 R formamidopyrimidine DNA glycosylase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase complement(3808366..3809175) Escherichia coli K12 946765 NP_418093.1 CDS rpmG NC_000913.2 3809273 3809440 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L33 complement(3809273..3809440) Escherichia coli K12 946318 NP_418094.1 CDS rpmB NC_000913.2 3809461 3809697 R GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L28 complement(3809461..3809697) Escherichia coli K12 946941 NP_418095.4 CDS yicR NC_000913.2 3809914 3810582 R DNA repair protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; protein associated with replication fork, possible DNA repair protein complement(3809914..3810582) Escherichia coli K12 948968 NP_418096.4 CDS dfp NC_000913.2 3810754 3811974 D flavoprotein affecting synthesis of DNA and pantothenate metabolism; GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; GO_process: DNA-dependent DNA replication [goid 0006261]; fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding 3810754..3811974 Escherichia coli K12 949047 NP_418097.1 CDS dut NC_000913.2 3811955 3812410 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; deoxyuridinetriphosphatase 3811955..3812410 Escherichia coli K12 948607 NP_418098.4 CDS slmA NC_000913.2 3812517 3813113 D putative transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; division inhibitor 3812517..3813113 Escherichia coli K12 948158 NP_418099.1 CDS pyrE NC_000913.2 3813150 3813791 R GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; orotate phosphoribosyltransferase complement(3813150..3813791) Escherichia coli K12 948157 YP_001491547.1 CDS rph NC_000913.2 3813886 3814572 R defective ribonuclease PH; enzyme; degradation of RNA; RNase PH; MG1655 has the rph-1 C-terminal frameshift mutation caused by a one base pair deletion of a G of the first base of codon 223 that severely reduces Rph activity; rph-1 mutation is polar on the downstream pyrE gene, reducing PyrE activity and causing partial pyrimidine starvation when grown in minimal medium; this mutant ribonuclease PH is shorter (228 aa) and has a C-terminal sequence of ESNPL replacing GIESIVATQKAALAN; GO_process: RNA catabolic process [goid 0006401]; defective ribonuclease PH complement(3813886..3814572) Escherichia coli K12 948156 NP_418101.1 CDS yicC NC_000913.2 3814699 3815562 D putative alpha helix protein; conserved protein 3814699..3815562 Escherichia coli K12 948154 NP_418102.2 CDS dinD NC_000913.2 3815783 3816607 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; DNA-damage-inducible protein 3815783..3816607 Escherichia coli K12 948153 NP_418103.4 CDS yicG NC_000913.2 3816897 3817514 D conserved inner membrane protein 3816897..3817514 Escherichia coli K12 948165 NP_418104.2 CDS ligB NC_000913.2 3817511 3819193 R putative enzyme; GO_process: DNA metabolic process [goid 0006259]; DNA ligase, NAD(+)-dependent complement(3817511..3819193) Escherichia coli K12 948164 NP_418105.1 CDS gmk NC_000913.2 3819451 3820074 D GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; guanylate kinase 3819451..3820074 Escherichia coli K12 948163 NP_418106.1 CDS rpoZ NC_000913.2 3820129 3820404 D GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, omega subunit 3820129..3820404 Escherichia coli K12 948160 NP_418107.1 CDS spoT NC_000913.2 3820423 3822531 D (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: response to starvation [goid 0042594]; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3820423..3822531 Escherichia coli K12 948159 NP_418108.1 CDS trmH NC_000913.2 3822538 3823227 D GO_process: RNA modification [goid 0009451]; tRNA (Guanosine-2'-O-)-methyltransferase 3822538..3823227 Escherichia coli K12 948161 NP_418109.1 CDS recG NC_000913.2 3823233 3825314 D DNA helicase, resolution of Holliday junctions, branch migration; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; ATP-dependent DNA helicase 3823233..3825314 Escherichia coli K12 948162 NP_418110.1 CDS gltS NC_000913.2 3825483 3826688 R glutamate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate transporter complement(3825483..3826688) Escherichia coli K12 948166 NP_418111.1 CDS yicE NC_000913.2 3826968 3828359 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3826968..3828359 Escherichia coli K12 948172 NP_418112.1 CDS yicH NC_000913.2 3828480 3830189 D conserved protein 3828480..3830189 Escherichia coli K12 948171 NP_418113.1 CDS yicI NC_000913.2 3830242 3832560 R predicted alpha-glucosidase complement(3830242..3832560) Escherichia coli K12 948169 NP_418114.4 CDS yicJ NC_000913.2 3832570 3833952 R putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(3832570..3833952) Escherichia coli K12 948168 b4653 CDS yicT NC_000913.2 3834448 3834579 D pseudogene; 3834448..3834579 Escherichia coli K12 5625579 NP_418115.1 CDS setC NC_000913.2 3834976 3836160 D two-module transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar efflux system 3834976..3836160 Escherichia coli K12 948177 NP_418116.1 CDS yicL NC_000913.2 3836271 3837194 D putative permease transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3836271..3837194 Escherichia coli K12 948176 NP_418117.1 CDS nlpA NC_000913.2 3837198 3838016 R lipoprotein-28; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cytoplasmic membrane lipoprotein-28 complement(3837198..3838016) Escherichia coli K12 948175 YP_588471.1 CDS yicS NC_000913.2 3838238 3838531 D predicted protein 3838238..3838531 Escherichia coli K12 1450300 NP_418118.2 CDS nepI NC_000913.2 3838572 3839762 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(3838572..3839762) Escherichia coli K12 948213 NP_418119.2 CDS yicN NC_000913.2 3839973 3840425 R conserved protein complement(3839973..3840425) Escherichia coli K12 948173 NP_418120.2 CDS yicO NC_000913.2 3840478 3841812 R predicted xanthine/uracil permase complement(3840478..3841812) Escherichia coli K12 948174 NP_418121.1 CDS ade NC_000913.2 3841987 3843753 D GO_process: metabolic process [goid 0008152]; cryptic adenine deaminase 3841987..3843753 Escherichia coli K12 948210 NP_418122.1 CDS uhpT NC_000913.2 3843799 3845190 R hexose phosphate transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; hexose phosphate transporter complement(3843799..3845190) Escherichia coli K12 948201 NP_418123.2 CDS uhpC NC_000913.2 3845328 3846647 R regulator of uhpT; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; membrane protein regulates uhpT expression complement(3845328..3846647) Escherichia coli K12 948184 NP_418124.4 CDS uhpB NC_000913.2 3846657 3848159 R sensor histidine protein kinase phosphorylates UhpA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory sytem with UhpA complement(3846657..3848159) Escherichia coli K12 948195 NP_418125.1 CDS uhpA NC_000913.2 3848159 3848749 R response regulator, positive activator of uhpT transcription (sensor, uhpB); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system wtih UhpB complement(3848159..3848749) Escherichia coli K12 948178 NP_418126.1 CDS ilvN NC_000913.2 3848825 3849115 R acetolactate synthase I, valine sensitive, small subunit; acetolactate synthase I, small subunit complement(3848825..3849115) Escherichia coli K12 948183 NP_418127.1 CDS ilvB NC_000913.2 3849119 3850807 R acetolactate synthase I,valine-sensitive, large subunit; acetolactate synthase I, large subunit complement(3849119..3850807) Escherichia coli K12 948182 NP_418128.1 CDS ivbL NC_000913.2 3850913 3851011 R GO_component: cytoplasm [goid 0005737]; ilvB operon leader peptide complement(3850913..3851011) Escherichia coli K12 948181 YP_001165330.1 CDS tisA NC_000913.2 3851466 3851579 D lexA-regulated predicted protein 3851466..3851579 Escherichia coli K12 5061526 YP_001165331.1 CDS tisB NC_000913.2 3851576 3851665 D lexA-regulated toxic peptide 3851576..3851665 Escherichia coli K12 5061527 NP_418129.2 CDS emrD NC_000913.2 3851945 3853129 D 2-module integral membrane pump; multidrug resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 3851945..3853129 Escherichia coli K12 948180 NP_418130.1 CDS yidF NC_000913.2 3853137 3853634 R putative transcriptional regulator; predicted DNA-binding transcriptional regulator complement(3853137..3853634) Escherichia coli K12 948179 NP_418131.1 CDS yidG NC_000913.2 3853631 3853993 R predicted inner membrane protein complement(3853631..3853993) Escherichia coli K12 948191 NP_418132.1 CDS yidH NC_000913.2 3853983 3854330 R conserved inner membrane protein complement(3853983..3854330) Escherichia coli K12 948190 NP_418133.1 CDS yidI NC_000913.2 3854438 3854887 D predicted inner membrane protein 3854438..3854887 Escherichia coli K12 948189 NP_418134.1 CDS yidJ NC_000913.2 3854934 3856427 R putative sulfatase; GO_process: sulfur metabolic process [goid 0006790]; predicted sulfatase/phosphatase complement(3854934..3856427) Escherichia coli K12 948188 NP_418135.1 CDS yidK NC_000913.2 3856424 3858139 R putative cotransporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(3856424..3858139) Escherichia coli K12 948185 NP_418136.1 CDS yidL NC_000913.2 3858276 3859199 D putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3858276..3859199 Escherichia coli K12 948186 b4556 CDS glvG NC_000913.2 3859196 3860010 R predicted protein (pseudogene) probable 6-phospho-beta-glucosidase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; complement(3859196..3860010) Escherichia coli K12 1450301 b3683 CDS glvC NC_000913.2 3860010 3861626 R arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols PTS system, arbutin-like IIB component PTS system, arbutin-like IIC component; complement(3860010..3861626) Escherichia coli K12 2847721 NP_418139.1 CDS yidP NC_000913.2 3861922 3862638 D putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3861922..3862638 Escherichia coli K12 948194 NP_418140.4 CDS yidE NC_000913.2 3862635 3864296 R putative transport protein; predicted transporter complement(3862635..3864296) Escherichia coli K12 948193 NP_418141.2 CDS ibpB NC_000913.2 3864492 3864920 R heat shock protein; GO_process: response to temperature stimulus [goid 0009266]; heat shock chaperone complement(3864492..3864920) Escherichia coli K12 948192 NP_418142.1 CDS ibpA NC_000913.2 3865032 3865445 R heat shock protein; GO_process: response to temperature stimulus [goid 0009266]; heat shock chaperone complement(3865032..3865445) Escherichia coli K12 948200 NP_418143.2 CDS yidQ NC_000913.2 3865751 3866083 D conserved outer membrane protein 3865751..3866083 Escherichia coli K12 948199 NP_418144.2 CDS yidR NC_000913.2 3866085 3867299 R conserved protein complement(3866085..3867299) Escherichia coli K12 948198 NP_418145.2 CDS cbrA NC_000913.2 3867400 3868464 D predicted oxidoreductase with FAD/NAD(P)-binding domain 3867400..3868464 Escherichia coli K12 948197 NP_418146.4 CDS dgoT NC_000913.2 3868461 3869753 R D-galactonate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-galactonate transporter complement(3868461..3869753) Escherichia coli K12 948196 YP_026237.1 CDS dgoD NC_000913.2 3869873 3871021 R GO_process: carbohydrate catabolic process [goid 0016052]; galactonate dehydratase complement(3869873..3871021) Escherichia coli K12 2847765 YP_026238.1 CDS dgoA NC_000913.2 3871018 3871635 R GO_process: carbohydrate catabolic process [goid 0016052]; 2-oxo-3-deoxygalactonate 6-phosphate aldolase complement(3871018..3871635) Escherichia coli K12 2847766 NP_418148.1 CDS dgoK NC_000913.2 3871619 3872497 R GO_process: carbohydrate catabolic process [goid 0016052]; 2-oxo-3-deoxygalactonate kinase complement(3871619..3872497) Escherichia coli K12 948207 YP_026239.1 CDS dgoR NC_000913.2 3872494 3873183 R transcriptional repressor for galactonate utilization (GntR family); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(3872494..3873183) Escherichia coli K12 2847767 YP_026240.1 CDS yidX NC_000913.2 3873461 3874117 D putative replicase EC 2.7.-; predicted lipoproteinC 3873461..3874117 Escherichia coli K12 948202 NP_418152.1 CDS yidA NC_000913.2 3874163 3874975 R predicted hydrolase complement(3874163..3874975) Escherichia coli K12 948204 NP_418153.4 CDS yidB NC_000913.2 3875090 3875488 R conserved protein complement(3875090..3875488) Escherichia coli K12 948212 YP_026241.1 CDS gyrB NC_000913.2 3875728 3878142 R DNA gyrase subunit B, type II topoisomerase, ATPase activity; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA gyrase, subunit B complement(3875728..3878142) Escherichia coli K12 948211 NP_418155.1 CDS recF NC_000913.2 3878171 3879244 R ssDNA and dsDNA binding, ATP binding; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; gap repair protein complement(3878171..3879244) Escherichia coli K12 948209 NP_418156.1 CDS dnaN NC_000913.2 3879244 3880344 R DNA polymerase III, beta-subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, beta subunit complement(3879244..3880344) Escherichia coli K12 948218 NP_418157.1 CDS dnaA NC_000913.2 3880349 3881752 R DNA biosynthesis; initiation of chromosome replication; can be transcription regulator; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator complement(3880349..3881752) Escherichia coli K12 948217 NP_418158.1 CDS rpmH NC_000913.2 3882359 3882499 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L34 3882359..3882499 Escherichia coli K12 948216 NP_418159.1 CDS rnpA NC_000913.2 3882516 3882875 D RNase P, protein component; protein C5 RNase P is an essential enzyme responsible for the processing of the 5' ends of precursors to tRNA and other naturally occurring stable RNA molecules RNase P also affects gene expression of polycistronic operon mRNAs; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; GO_process: RNA modification [goid 0009451]; protein C5 component of RNase P 3882516..3882875 Escherichia coli K12 948215 YP_588472.1 CDS yidD NC_000913.2 3882839 3883096 D GO_component: cytoplasm [goid 0005737]; predicted protein 3882839..3883096 Escherichia coli K12 1450303 NP_418161.1 CDS yidC NC_000913.2 3883099 3884745 D 60 KD inner-membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cytoplasmic insertase into membrane protein, Sec system 3883099..3884745 Escherichia coli K12 948214 NP_418162.1 CDS mnmE NC_000913.2 3884851 3886215 D GO_process: RNA modification [goid 0009451]; GO_process: xenobiotic metabolic process [goid 0006805]; GTPase 3884851..3886215 Escherichia coli K12 948222 NP_418163.1 CDS tnaC NC_000913.2 3886458 3886532 D GO_process: amino acid catabolic process [goid 0009063]; tryptophanase leader peptide 3886458..3886532 Escherichia coli K12 948223 NP_418164.4 CDS tnaA NC_000913.2 3886753 3888168 D tryptophanase; GO_process: amino acid catabolic process [goid 0009063]; tryptophanase/L-cysteine desulfhydrase, PLP-dependent 3886753..3888168 Escherichia coli K12 948221 NP_418165.1 CDS tnaB NC_000913.2 3888259 3889506 D low affinity tryptophan permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan transporter of low affinity 3888259..3889506 Escherichia coli K12 948220 NP_418166.1 CDS mdtL NC_000913.2 3889638 3890813 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 3889638..3890813 Escherichia coli K12 948219 NP_418167.1 CDS yidZ NC_000913.2 3890788 3891747 D putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3890788..3891747 Escherichia coli K12 948227 NP_418168.1 CDS yieE NC_000913.2 3891892 3892653 D predicted phosphopantetheinyl transferase 3891892..3892653 Escherichia coli K12 948226 NP_418169.1 CDS yieF NC_000913.2 3892675 3893241 D chromate reductase, Class I, flavoprotein 3892675..3893241 Escherichia coli K12 948225 NP_418170.1 CDS yieG NC_000913.2 3893295 3894632 R putative membrane / transport protein; predicted inner membrane protein complement(3893295..3894632) Escherichia coli K12 948224 NP_418171.1 CDS yieH NC_000913.2 3894797 3895462 D putative phosphatase; predicted hydrolase 3894797..3895462 Escherichia coli K12 948232 NP_418172.1 CDS cbrB NC_000913.2 3895529 3895996 D predicted inner membrane protein 3895529..3895996 Escherichia coli K12 948231 NP_418173.1 CDS cbrC NC_000913.2 3896045 3896632 D conserved protein 3896045..3896632 Escherichia coli K12 948230 YP_026242.1 CDS yieK NC_000913.2 3896694 3897416 R pyrimidine-specific nucleoside hydrolase; predicted 6-phosphogluconolactonase complement(3896694..3897416) Escherichia coli K12 948229 NP_418175.3 CDS yieL NC_000913.2 3897431 3898600 R putative xylanase; GO_process: carbohydrate catabolic process [goid 0016052]; predicted xylanase complement(3897431..3898600) Escherichia coli K12 948272 NP_418176.1 CDS bglH NC_000913.2 3898627 3900243 R putative receptor protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; carbohydrate-specific outer membrane porin, cryptic complement(3898627..3900243) Escherichia coli K12 948228 NP_418177.1 CDS bglB NC_000913.2 3900312 3901724 R phospho-beta-glucosidase B; cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic phospho-beta-glucosidase B complement(3900312..3901724) Escherichia coli K12 948234 NP_418178.1 CDS bglF NC_000913.2 3901743 3903620 R PTS system beta-glucosides, enzyme II, cryptic; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component complement(3901743..3903620) Escherichia coli K12 948236 NP_418179.1 CDS bglG NC_000913.2 3903754 3904590 R positive regulation of bgl operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; transcriptional antiterminator of the bgl operon complement(3903754..3904590) Escherichia coli K12 948235 NP_418180.1 CDS phoU NC_000913.2 3904876 3905601 R negative regulator for pho regulon and putative enzyme in phosphate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; negative regulator of PhoR/PhoB two-component regulator complement(3904876..3905601) Escherichia coli K12 948233 NP_418181.1 CDS pstB NC_000913.2 3905616 3906389 R ATP-binding component of high-affinity phosphate-specific transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit complement(3905616..3906389) Escherichia coli K12 948240 NP_418182.1 CDS pstA NC_000913.2 3906572 3907462 R high-affinity phosphate-specific transport system; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit complement(3906572..3907462) Escherichia coli K12 948239 NP_418183.1 CDS pstC NC_000913.2 3907462 3908421 R high-affinity phosphate-specific transport system, cytoplasmic membrane component; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit complement(3907462..3908421) Escherichia coli K12 948238 NP_418184.1 CDS pstS NC_000913.2 3908508 3909548 R high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit complement(3908508..3909548) Escherichia coli K12 948237 NP_418185.1 CDS glmS NC_000913.2 3909862 3911691 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: amino sugar biosynthetic process [goid 0046349]; L-glutamine:D-fructose-6-phosphate aminotransferase complement(3909862..3911691) Escherichia coli K12 948241 NP_418186.1 CDS glmU NC_000913.2 3911853 3913223 R N-acetyl glucosamine-1-phosphate uridyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; GO_process: amine catabolic process [goid 0009310]; fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase complement(3911853..3913223) Escherichia coli K12 948246 NP_418187.1 CDS atpC NC_000913.2 3913576 3913995 R membrane-bound ATP synthase, F1 sector, epsilon-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, epsilon subunit complement(3913576..3913995) Escherichia coli K12 948245 NP_418188.1 CDS atpD NC_000913.2 3914016 3915398 R membrane-bound ATP synthase, F1 sector, beta-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, beta subunit complement(3914016..3915398) Escherichia coli K12 948244 NP_418189.1 CDS atpG NC_000913.2 3915425 3916288 R membrane-bound ATP synthase, F1 sector, gamma-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, gamma subunit complement(3915425..3916288) Escherichia coli K12 948243 NP_418190.1 CDS atpA NC_000913.2 3916339 3917880 R membrane-bound ATP synthase, F1 sector, alpha-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, alpha subunit complement(3916339..3917880) Escherichia coli K12 948242 NP_418191.1 CDS atpH NC_000913.2 3917893 3918426 R membrane-bound ATP synthase, F1 sector, delta-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, delta subunit complement(3917893..3918426) Escherichia coli K12 948254 NP_418192.1 CDS atpF NC_000913.2 3918441 3918911 R membrane-bound ATP synthase, F0 sector, subunit b; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F0 sector of membrane-bound ATP synthase, subunit b complement(3918441..3918911) Escherichia coli K12 948247 NP_418193.1 CDS atpE NC_000913.2 3918973 3919212 R membrane-bound ATP synthase, F0 sector, subunit c; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F0 sector of membrane-bound ATP synthase, subunit c complement(3918973..3919212) Escherichia coli K12 948253 NP_418194.1 CDS atpB NC_000913.2 3919259 3920074 R membrane-bound ATP synthase, F0 sector, subunit a; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; GO_process: protein folding [goid 0006457]; F0 sector of membrane-bound ATP synthase, subunit a complement(3919259..3920074) Escherichia coli K12 948252 NP_418195.2 CDS atpI NC_000913.2 3920083 3920463 R membrane-bound ATP synthase, dispensable protein, affects expression of atpB; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; ATP synthase, membrane-bound accesory subunit complement(3920083..3920463) Escherichia coli K12 948251 NP_418196.1 CDS gidB NC_000913.2 3921080 3921703 R glucose-inhibited division; chromosome replication?; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein complement(3921080..3921703) Escherichia coli K12 948250 NP_418197.1 CDS mnmG NC_000913.2 3921767 3923656 R glucose-inhibited division; chromosome replication?; glucose-inhibited cell-division protein complement(3921767..3923656) Escherichia coli K12 948248 NP_418198.1 CDS mioC NC_000913.2 3924035 3924478 R initiation of chromosome replication; GO_process: DNA-dependent DNA replication [goid 0006261]; FMN-binding protein MioC complement(3924035..3924478) Escherichia coli K12 948249 NP_418199.1 CDS asnC NC_000913.2 3924568 3925026 R regulator for asnA, asnC and gidA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: asparagine biosynthetic process [goid 0006529]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(3924568..3925026) Escherichia coli K12 948259 NP_418200.1 CDS asnA NC_000913.2 3925178 3926170 D GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: asparagine biosynthetic process [goid 0006529]; asparagine synthetase A 3925178..3926170 Escherichia coli K12 948258 YP_026243.1 CDS viaA NC_000913.2 3926175 3927626 R predicted von Willibrand factor containing protein complement(3926175..3927626) Escherichia coli K12 948257 NP_418202.4 CDS ravA NC_000913.2 3927620 3929116 R putative 2-component regulator; fused predicted transcriptional regulator: sigma54 activator protein/conserved protein complement(3927620..3929116) Escherichia coli K12 948256 YP_026244.1 CDS kup NC_000913.2 3929339 3931207 D low affinity potassium transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to osmotic stress [goid 0006970]; potassium transporter 3929339..3931207 Escherichia coli K12 948255 NP_418204.2 CDS rbsD NC_000913.2 3931374 3931793 D D-ribose high-affinity transport system; membrane-associated protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted cytoplasmic sugar-binding protein 3931374..3931793 Escherichia coli K12 948267 NP_418205.1 CDS rbsA NC_000913.2 3931801 3933306 D ATP-binding component of D-ribose high-affinity transport system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused D-ribose transporter subunits of ABC superfamily: ATP-binding components 3931801..3933306 Escherichia coli K12 948264 NP_418206.1 CDS rbsC NC_000913.2 3933311 3934276 D D-ribose high-affinity transport system; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-ribose transporter subunit 3933311..3934276 Escherichia coli K12 948262 NP_418207.1 CDS rbsB NC_000913.2 3934301 3935191 D D-ribose periplasmic binding protein; periplasmic-binding compoent of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; D-ribose transporter subunit 3934301..3935191 Escherichia coli K12 948261 NP_418208.1 CDS rbsK NC_000913.2 3935317 3936246 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; ribokinase 3935317..3936246 Escherichia coli K12 948260 NP_418209.1 CDS rbsR NC_000913.2 3936250 3937242 D regulator for rbs operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor of ribose metabolism 3936250..3937242 Escherichia coli K12 948266 NP_418210.1 CDS hsrA NC_000913.2 3937208 3938635 R putative transport protein (MFS family) high copy suppressor of RspA: relieves RspA-mediated reduction of sigma(S) levels; overexpression also reduces MetE activity; effect proposed to be via an elevation in levels of homocysteine, causing a concomitant increase in homocysteine thiolactone overexpression has no effect on resistance to a variety of toxic compounds overexpression has no effect on resistance to a variety of toxic compounds; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted multidrug or homocysteine efflux system complement(3937208..3938635) Escherichia coli K12 948265 YP_026245.1 CDS yieP NC_000913.2 3938658 3939350 R predicted transcriptional regulator complement(3938658..3939350) Escherichia coli K12 948263 YP_026246.1 CDS hdfR NC_000913.2 3945151 3945990 R transcriptional regulator of the flhDC operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator complement(3945151..3945990) Escherichia coli K12 2847698 NP_418213.1 CDS yifE NC_000913.2 3946109 3946447 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; conserved protein 3946109..3946447 Escherichia coli K12 948274 NP_418214.2 CDS yifB NC_000913.2 3946472 3947992 R putative 2-component regulator; predicted bifunctional enzyme and transcriptional regulator complement(3946472..3947992) Escherichia coli K12 948282 NP_418215.1 CDS ilvL NC_000913.2 3948345 3948443 D ilvGEDA operon leader peptide; GO_component: cytoplasm [goid 0005737]; ilvG operon leader peptide 3948345..3948443 Escherichia coli K12 948283 b4488 CDS ilvG NC_000913.2 3948583 3950227 D pseudogene, acetohydroxy acid synthase II acetolactate synthase II, large subunit, cryptic, interrupted; join(3948583..3949566,3949565..3950227) Escherichia coli K12 2847699 NP_418217.1 CDS ilvM NC_000913.2 3950224 3950487 D acetolactate synthase II, valine insensitive, small subunit; acetolactate synthase II, small subunit 3950224..3950487 Escherichia coli K12 948279 YP_026247.1 CDS ilvE NC_000913.2 3950507 3951436 D GO_process: alanine biosynthetic process [goid 0006523]; GO_process: leucine biosynthetic process [goid 0009098]; branched-chain amino-acid aminotransferase 3950507..3951436 Escherichia coli K12 948278 YP_026248.1 CDS ilvD NC_000913.2 3951501 3953351 D dihydroxyacid dehydratase 3951501..3953351 Escherichia coli K12 948277 NP_418220.1 CDS ilvA NC_000913.2 3953354 3954898 D threonine deaminase (dehydratase); threonine deaminase 3953354..3954898 Escherichia coli K12 948287 NP_418221.1 CDS ilvY NC_000913.2 3954950 3955843 R positive regulator for ilvC; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(3954950..3955843) Escherichia coli K12 948284 NP_418222.1 CDS ilvC NC_000913.2 3955993 3957468 D ketol-acid reductoisomerase; GO_component: cytoplasm [goid 0005737]; ketol-acid reductoisomerase, NAD(P)-binding 3955993..3957468 Escherichia coli K12 948286 NP_418223.1 CDS ppiC NC_000913.2 3957555 3957836 R GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase C (rotamase C) complement(3957555..3957836) Escherichia coli K12 948285 b3777 CDS yifN NC_000913.2 3958035 3958483 R conserved protein (pseudogene); complement(join(3958035..3958277,3958277..3958483)) Escherichia coli K12 2847676 YP_026251.1 CDS rep NC_000913.2 3958700 3960721 D rep helicase, a single-stranded DNA dependent ATPase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA helicase and single-stranded DNA-dependent ATPase 3958700..3960721 Escherichia coli K12 948292 YP_026252.1 CDS gpp NC_000913.2 3960768 3962252 R guanosine pentaphosphatase; exopolyphosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; guanosine pentaphosphatase/exopolyphosphatase complement(3960768..3962252) Escherichia coli K12 948291 NP_418227.1 CDS rhlB NC_000913.2 3962388 3963653 R putative ATP-dependent RNA helicase; ATP-dependent RNA helicase complement(3962388..3963653) Escherichia coli K12 948290 NP_418228.2 CDS trxA NC_000913.2 3963784 3964113 D thioredoxin 1 3963784..3964113 Escherichia coli K12 948289 NP_418230.1 CDS rho NC_000913.2 3964440 3965699 D transcription termination factor Rho; polarity suppressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; transcription termination factor 3964440..3965699 Escherichia coli K12 948297 NP_418231.1 CDS rfe NC_000913.2 3965939 3967042 D GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3965939..3967042 Escherichia coli K12 948789 NP_418232.2 CDS wzzE NC_000913.2 3967054 3968100 D modulator of enterobacterial common antigen (ECA) polysaccharide chain length; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein 3967054..3968100 Escherichia coli K12 944815 YP_026253.1 CDS rffE NC_000913.2 3968156 3969286 D GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-N-acetyl glucosamine-2-epimerase 3968156..3969286 Escherichia coli K12 944789 YP_026254.1 CDS rffD NC_000913.2 3969283 3970545 D UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; synthesis of enterobacterial common antigen (ECA); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 3969283..3970545 Escherichia coli K12 948977 YP_026255.1 CDS rffG NC_000913.2 3970545 3971612 D GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; GO_process: NAD biosynthetic process [goid 0009435]; dTDP-glucose 4,6-dehydratase 3970545..3971612 Escherichia coli K12 948300 NP_418236.1 CDS rffH NC_000913.2 3971631 3972512 D GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; glucose-1-phosphate thymidylyltransferase 3971631..3972512 Escherichia coli K12 948299 YP_026256.2 CDS rffC NC_000913.2 3972490 3973164 D putative acyltransferase, lipopolysaccharide biosynthesis protein; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; TDP-fucosamine acetyltransferase 3972490..3973164 Escherichia coli K12 948298 NP_418238.1 CDS rffA NC_000913.2 3973169 3974299 D GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; TDP-4-oxo-6-deoxy-D-glucose transaminase 3973169..3974299 Escherichia coli K12 948296 NP_418239.1 CDS wzxE NC_000913.2 3974301 3975551 D O-antigen translocase in LPS biosynthesis; GO_process: cytochrome complex assembly [goid 0017004]; O-antigen translocase 3974301..3975551 Escherichia coli K12 948294 YP_026257.1 CDS rffT NC_000913.2 3975548 3976627 D TDP-Fuc4NAc:lipidII transferase; TDP-Fuc4NAc:lipidIIFuc4NAc transferase 3975548..3976627 Escherichia coli K12 2847677 NP_418241.1 CDS wzyE NC_000913.2 3976624 3977976 D putative ECA polymerization protein; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; predicted Wzy protein involved in ECA polysaccharide chain elongation 3976624..3977976 Escherichia coli K12 948293 NP_418242.1 CDS rffM NC_000913.2 3977979 3978719 D probable UDP-N-acetyl-D-mannosaminuronic acid transferase; synthesis of enterobacterial common antigen (ECA); GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-N-acetyl-D-mannosaminuronic acid transferase 3977979..3978719 Escherichia coli K12 948301 YP_026258.1 CDS yifK NC_000913.2 3978910 3980295 D putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3978910..3980295 Escherichia coli K12 945400 YP_026259.1 CDS aslB NC_000913.2 3980981 3982216 D putative arylsulfatase regulator; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: protein folding [goid 0006457]; predicted regulator of arylsulfatase activity 3980981..3982216 Escherichia coli K12 949013 NP_418245.1 CDS aslA NC_000913.2 3982375 3984030 R arylsulfatase; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; acrylsulfatase-like enzyme complement(3982375..3984030) Escherichia coli K12 949015 NP_418246.1 CDS hemY NC_000913.2 3984709 3985905 R a late step of protoheme IX synthesis; predicted protoheme IX synthesis protein complement(3984709..3985905) Escherichia coli K12 948311 NP_418247.1 CDS hemX NC_000913.2 3985908 3987089 R uroporphyrinogen III methylase; predicted uroporphyrinogen III methylase complement(3985908..3987089) Escherichia coli K12 948446 NP_418248.1 CDS hemD NC_000913.2 3987111 3987851 R uroporphyrinogen III synthase complement(3987111..3987851) Escherichia coli K12 948587 YP_026260.1 CDS hemC NC_000913.2 3987848 3988789 R porphobilinogen deaminase = hydroxymethylbilane synthase; hydroxymethylbilane synthase complement(3987848..3988789) Escherichia coli K12 947759 NP_418250.1 CDS cyaA NC_000913.2 3989176 3991722 D GO_component: cytoplasm [goid 0005737]; adenylate cyclase 3989176..3991722 Escherichia coli K12 947755 NP_418251.1 CDS cyaY NC_000913.2 3991762 3992082 R iron-binding frataxin homolog cyaY is expressed neither knock-out nor overexpression of cyaY in Escherichia coli affects cellular iron content or sensitivity to oxidants possibly involved in maintaining the intracellular iron pool in a soluble, non-toxic and bio-available form for biosynthetic pathways, while preventing the participation of iron in oxidative damage; frataxin, iron-binding and oxidizing protein complement(3991762..3992082) Escherichia coli K12 947754 YP_588473.1 CDS yifL NC_000913.2 3992545 3992748 D predicted lipoprotein 3992545..3992748 Escherichia coli K12 1450304 NP_418254.2 CDS dapF NC_000913.2 3992785 3993609 D GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; diaminopimelate epimerase 3992785..3993609 Escherichia coli K12 948364 NP_418255.1 CDS yigA NC_000913.2 3993606 3994313 D conserved protein 3993606..3994313 Escherichia coli K12 948359 NP_418256.1 CDS xerC NC_000913.2 3994310 3995206 D site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division; GO_process: DNA recombination [goid 0006310]; site-specific tyrosine recombinase 3994310..3995206 Escherichia coli K12 948355 NP_418257.1 CDS yigB NC_000913.2 3995206 3995922 D putative phosphatase; predicted hydrolase 3995206..3995922 Escherichia coli K12 948357 NP_418258.1 CDS uvrD NC_000913.2 3996006 3998168 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA-dependent ATPase I and helicase II 3996006..3998168 Escherichia coli K12 948347 YP_026261.1 CDS yigE NC_000913.2 3998315 3999079 R predicted protein complement(3998315..3999079) Escherichia coli K12 2847679 NP_418260.1 CDS corA NC_000913.2 3999449 4000399 D Mg2+ transport, system I; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; magnesium/nickel/cobalt transporter 3999449..4000399 Escherichia coli K12 948351 NP_418261.1 CDS yigF NC_000913.2 4000442 4000822 R conserved inner membrane protein complement(4000442..4000822) Escherichia coli K12 948340 NP_418262.2 CDS yigG NC_000913.2 4000836 4001216 R predicted inner membrane protein complement(4000836..4001216) Escherichia coli K12 948344 YP_026262.1 CDS rarD NC_000913.2 4001311 4002201 R GO_process: response to drug [goid 0042493]; GO_process: chloramphenicol transport [goid 0042892]; predicted chloramphenical resistance permease complement(4001311..4002201) Escherichia coli K12 948330 NP_418264.4 CDS yigI NC_000913.2 4002253 4002720 R conserved protein complement(4002253..4002720) Escherichia coli K12 948338 NP_418265.1 CDS pldA NC_000913.2 4002885 4003754 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: phosphorus metabolic process [goid 0006793]; outer membrane phospholipase A 4002885..4003754 Escherichia coli K12 948307 YP_026263.3 CDS recQ NC_000913.2 4003887 4005716 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; ATP-dependent DNA helicase 4003887..4005716 Escherichia coli K12 948318 YP_026264.1 CDS rhtC NC_000913.2 4005780 4006400 D amino acid exporter (threonine) threonine efflux protein (RhtB family); GO_component: organelle inner membrane [goid 0019866]; GO_process: threonine biosynthetic process [goid 0009088]; threonine efflux system 4005780..4006400 Escherichia coli K12 948317 YP_026265.1 CDS rhtB NC_000913.2 4006462 4007082 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-serine biosynthetic process [goid 0006564]; neutral amino-acid efflux system complement(4006462..4007082) Escherichia coli K12 948316 YP_026266.1 CDS pldB NC_000913.2 4007193 4008215 D GO_process: phosphorus metabolic process [goid 0006793]; lysophospholipase L(2) 4007193..4008215 Escherichia coli K12 948314 YP_026267.1 CDS yigL NC_000913.2 4008223 4009023 D conserved protein, phosphatase-like domain; predicted hydrolase 4008223..4009023 Escherichia coli K12 2847768 NP_418271.1 CDS yigM NC_000913.2 4009099 4009998 D predicted inner membrane protein 4009099..4009998 Escherichia coli K12 948309 NP_418272.1 CDS metR NC_000913.2 4009886 4010839 R regulator for metE and metH; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, homocysteine-binding complement(4009886..4010839) Escherichia coli K12 948310 NP_418273.1 CDS metE NC_000913.2 4011076 4013337 D tetrahydropteroyltriglutamate methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: S-adenosylmethionine biosynthetic process [goid 0006556]; 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase 4011076..4013337 Escherichia coli K12 948323 YP_026268.1 CDS ysgA NC_000913.2 4013377 4014192 R putative enzyme; predicted hydrolase complement(4013377..4014192) Escherichia coli K12 948320 NP_418275.1 CDS udp NC_000913.2 4014454 4015215 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uridine phosphorylase 4014454..4015215 Escherichia coli K12 948987 NP_418276.1 CDS rmuC NC_000913.2 4015356 4016783 D putative alpha helix chain; predicted recombination limiting protein 4015356..4016783 Escherichia coli K12 948966 YP_026269.1 CDS ubiE NC_000913.2 4016878 4017633 D 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase 4016878..4017633 Escherichia coli K12 948926 NP_418278.1 CDS yigP NC_000913.2 4017647 4018252 D conserved protein 4017647..4018252 Escherichia coli K12 948915 NP_418279.1 CDS ubiB NC_000913.2 4018249 4019889 D 2-octaprenylphenol hydroxylase 4018249..4019889 Escherichia coli K12 948322 NP_418280.4 CDS tatA NC_000913.2 4019968 4020237 D TatABCE protein translocation system subunit 4019968..4020237 Escherichia coli K12 948321 YP_026270.1 CDS tatB NC_000913.2 4020241 4020756 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; TatABCE protein translocation system subunit 4020241..4020756 Escherichia coli K12 948319 NP_418282.1 CDS tatC NC_000913.2 4020759 4021535 D TatABCE protein translocation system subunit 4020759..4021535 Escherichia coli K12 948328 YP_026271.1 CDS tatD NC_000913.2 4021577 4022359 D cytoplasmic Dnase; GO_component: cytoplasm [goid 0005737]; DNase, magnesium-dependent 4021577..4022359 Escherichia coli K12 2847752 NP_418284.1 CDS rfaH NC_000913.2 4022356 4022844 R transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: pilus biogenesis [goid 0009297]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional antiterminator complement(4022356..4022844) Escherichia coli K12 948327 NP_418285.1 CDS ubiD NC_000913.2 4023011 4024504 D 3-octaprenyl-4-hydroxybenzoate decarboxylase 4023011..4024504 Escherichia coli K12 948326 NP_418286.1 CDS fre NC_000913.2 4024550 4025251 D ferrisiderophore reductase; flavin reductase (NADPH:flavin oxidoreductase); GO_function: electron carrier activity [goid 0009055]; flavin reductase 4024550..4025251 Escherichia coli K12 948325 YP_026272.1 CDS fadA NC_000913.2 4025632 4026795 R thiolase I; 3-ketoacyl-CoA thiolase; acetyl-CoA transferase; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; 3-ketoacyl-CoA thiolase (thiolase I) complement(4025632..4026795) Escherichia coli K12 948324 NP_418288.1 CDS fadB NC_000913.2 4026805 4028994 R 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase; GO_process: fatty acid oxidation [goid 0019395]; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase complement(4026805..4028994) Escherichia coli K12 948336 NP_418289.1 CDS pepQ NC_000913.2 4029184 4030515 D proline dipeptidase 4029184..4030515 Escherichia coli K12 948335 NP_418290.4 CDS yigZ NC_000913.2 4030515 4031129 D GO_process: translation [goid 0006412]; predicted elongation factor 4030515..4031129 Escherichia coli K12 948334 YP_026273.1 CDS trkH NC_000913.2 4031168 4032619 D potassium uptake, requires TrkE; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; potassium transporter 4031168..4032619 Escherichia coli K12 948333 NP_418292.1 CDS hemG NC_000913.2 4032631 4033176 D protoporphyrin oxidase; protoporphyrin oxidase, flavoprotein 4032631..4033176 Escherichia coli K12 948331 NP_418293.2 CDS mobB NC_000913.2 4038929 4039456 R GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin-guanine dinucleotide biosynthesis protein B complement(4038929..4039456) Escherichia coli K12 948343 NP_418294.1 CDS mobA NC_000913.2 4039438 4040022 R molybdopterin ---> molybdopterin-guanine dinucleotide, protein Ar; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin-guanine dinucleotide synthase complement(4039438..4040022) Escherichia coli K12 948349 NP_418295.1 CDS yihD NC_000913.2 4040092 4040361 D conserved protein 4040092..4040361 Escherichia coli K12 948348 NP_418296.1 CDS rdoA NC_000913.2 4040438 4041424 D Thr/Ser kinase implicated in Cpx stress response 4040438..4041424 Escherichia coli K12 948346 NP_418297.1 CDS dsbA NC_000913.2 4041441 4042067 D protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; GO_process: response to stress [goid 0006950]; periplasmic protein disulfide isomerase I 4041441..4042067 Escherichia coli K12 948353 NP_418298.4 CDS yihF NC_000913.2 4042222 4043652 D putative GTP-binding protein; conserved protein 4042222..4043652 Escherichia coli K12 948352 NP_418299.1 CDS yihG NC_000913.2 4043693 4044625 R putative endonuclease; predicted endonuclease complement(4043693..4044625) Escherichia coli K12 948350 NP_418300.1 CDS polA NC_000913.2 4044989 4047775 D DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease 4044989..4047775 Escherichia coli K12 948356 NP_418301.3 CDS yihA NC_000913.2 4048156 4048788 R GTPase essential for cell cycle; GO_process: cell cycle [goid 0007049]; GTP-binding protein complement(4048156..4048788) Escherichia coli K12 948358 NP_418302.1 CDS yihI NC_000913.2 4049370 4049879 D conserved protein 4049370..4049879 Escherichia coli K12 948363 NP_418303.2 CDS hemN NC_000913.2 4050068 4051441 D O2-independent coproporphyrinogen III oxidase; coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent 4050068..4051441 Escherichia coli K12 948362 NP_418304.1 CDS glnG NC_000913.2 4051892 4053301 R response regulator for gln (sensor glnL) (nitrogen regulator I, NRI); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: transcription [goid 0006350]; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein complement(4051892..4053301) Escherichia coli K12 948361 NP_418305.1 CDS glnL NC_000913.2 4053313 4054362 R histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with GlnG complement(4053313..4054362) Escherichia coli K12 948360 NP_418306.1 CDS glnA NC_000913.2 4054648 4056057 R GO_component: cytoplasm [goid 0005737]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: nitrogen compound metabolic process [goid 0006807]; glutamine synthetase complement(4054648..4056057) Escherichia coli K12 948370 YP_026274.1 CDS typA NC_000913.2 4056430 4058253 D GTP-binding protein 4056430..4058253 Escherichia coli K12 948369 NP_418308.1 CDS yihL NC_000913.2 4058470 4059180 D putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 4058470..4059180 Escherichia coli K12 948368 NP_418309.1 CDS yihM NC_000913.2 4059188 4060168 D predicted sugar phosphate isomerase 4059188..4060168 Escherichia coli K12 948367 NP_418310.1 CDS yihN NC_000913.2 4060270 4061535 D putative resistance protein (transport); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4060270..4061535 Escherichia coli K12 948365 NP_418311.1 CDS ompL NC_000913.2 4061626 4062318 R predicted outer membrane porin L complement(4061626..4062318) Escherichia coli K12 948366 YP_026275.1 CDS yihO NC_000913.2 4062386 4063789 R putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(4062386..4063789) Escherichia coli K12 948377 NP_418313.4 CDS yihP NC_000913.2 4063832 4065217 R putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(4063832..4065217) Escherichia coli K12 948371 NP_418314.1 CDS yihQ NC_000913.2 4065263 4067299 R putative glycosidase; alpha-glucosidase complement(4065263..4067299) Escherichia coli K12 948376 NP_418315.3 CDS yihR NC_000913.2 4067498 4068424 R putative aldose-1-epimerase; predicted aldose-1-epimerase complement(4067498..4068424) Escherichia coli K12 948375 NP_418316.4 CDS yihS NC_000913.2 4068538 4069779 R predicted glucosamine isomerase complement(4068538..4069779) Escherichia coli K12 948374 NP_418317.1 CDS yihT NC_000913.2 4069796 4070674 R putative aldolase; predicted aldolase complement(4069796..4070674) Escherichia coli K12 948373 NP_418318.1 CDS yihU NC_000913.2 4070698 4071594 R putative dehydrogenase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(4070698..4071594) Escherichia coli K12 948372 NP_418319.2 CDS yihV NC_000913.2 4071762 4072658 D putative kinase; predicted sugar kinase 4071762..4072658 Escherichia coli K12 948382 NP_418320.2 CDS yihW NC_000913.2 4072692 4073477 D putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 4072692..4073477 Escherichia coli K12 948381 NP_418321.4 CDS yihX NC_000913.2 4073576 4074175 D putative phosphatase; predicted hydrolase 4073576..4074175 Escherichia coli K12 948380 NP_418322.1 CDS yihY NC_000913.2 4074169 4075041 D tRNA processing exoribonuclease BN; GO_component: cytoplasm [goid 0005737]; predicted inner membrane protein 4074169..4075041 Escherichia coli K12 948379 NP_418323.1 CDS dtd NC_000913.2 4075038 4075475 D GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; GO_process: xenobiotic metabolic process [goid 0006805]; D-tyr-tRNA(Tyr) deacylase 4075038..4075475 Escherichia coli K12 948378 NP_418324.1 CDS yiiD NC_000913.2 4075472 4076461 D putative acetyltransferase; predicted acetyltransferase 4075472..4076461 Escherichia coli K12 948387 NP_418325.3 CDS yiiE NC_000913.2 4077320 4077532 D predicted transcriptional regulator 4077320..4077532 Escherichia coli K12 948386 NP_418326.2 CDS yiiF NC_000913.2 4077774 4077992 D conserved protein 4077774..4077992 Escherichia coli K12 948385 NP_418327.1 CDS fdhE NC_000913.2 4078322 4079251 R affects formate dehydrogenase-N; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; formate dehydrogenase formation protein complement(4078322..4079251) Escherichia coli K12 948384 NP_418328.1 CDS fdoI NC_000913.2 4079248 4079883 R formate dehydrogenase, cytochrome B556 (FDO) subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; formate dehydrogenase-O, cytochrome b556 subunit complement(4079248..4079883) Escherichia coli K12 948383 NP_418329.1 CDS fdoH NC_000913.2 4079880 4080782 R formate dehydrogenase-O, iron-sulfur subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-O, Fe-S subunit complement(4079880..4080782) Escherichia coli K12 948395 NP_418330.1 CDS fdoG NC_000913.2 4080795 4083845 R formate dehydrogenase-O, major subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-O, large subunit complement(4080795..4083845) Escherichia coli K12 948394 NP_418331.1 CDS fdhD NC_000913.2 4084039 4084872 D affects formate dehydrogenase-N; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; formate dehydrogenase formation protein 4084039..4084872 Escherichia coli K12 948393 NP_418332.1 CDS yiiG NC_000913.2 4085025 4086080 D conserved protein 4085025..4086080 Escherichia coli K12 948392 NP_418333.1 CDS frvR NC_000913.2 4086130 4087878 R putative frv operon regulatory protein; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted regulator complement(4086130..4087878) Escherichia coli K12 948389 NP_418334.1 CDS frvX NC_000913.2 4087878 4088948 R frv operon protein; GO_process: polysaccharide catabolic process [goid 0000272]; predicted endo-1,4-beta-glucanase complement(4087878..4088948) Escherichia coli K12 948388 NP_418335.4 CDS frvB NC_000913.2 4088938 4090389 R PTS system, fructose-like enzyme IIBC component; fused predicted PTS enzymes: IIB component/IIC component complement(4088938..4090389) Escherichia coli K12 948390 NP_418336.1 CDS frvA NC_000913.2 4090400 4090846 R PTS system, fructose-specific IIA component; GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIA component of PTS complement(4090400..4090846) Escherichia coli K12 948391 NP_418337.1 CDS rhaM NC_000913.2 4091147 4091461 R L-rhamnose mutarotase complement(4091147..4091461) Escherichia coli K12 948402 NP_418338.1 CDS rhaD NC_000913.2 4091471 4092295 R rhamnulose-phosphate aldolase; GO_process: carbohydrate catabolic process [goid 0016052]; rhamnulose-1-phosphate aldolase complement(4091471..4092295) Escherichia coli K12 948401 YP_026276.1 CDS rhaA NC_000913.2 4092746 4094005 R GO_process: carbohydrate catabolic process [goid 0016052]; L-rhamnose isomerase complement(4092746..4094005) Escherichia coli K12 948400 NP_418340.1 CDS rhaB NC_000913.2 4094002 4095471 R GO_process: carbohydrate catabolic process [goid 0016052]; rhamnulokinase complement(4094002..4095471) Escherichia coli K12 948399 NP_418341.1 CDS rhaS NC_000913.2 4095759 4096595 D positive regulator for rhaBAD operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, L-rhamnose-binding 4095759..4096595 Escherichia coli K12 948397 NP_418342.1 CDS rhaR NC_000913.2 4096579 4097517 D positive regulator for rhaRS operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, L-rhamnose-binding 4096579..4097517 Escherichia coli K12 948396 NP_418343.1 CDS rhaT NC_000913.2 4097514 4098548 R rhamnose transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; L-rhamnose:proton symporter complement(4097514..4098548) Escherichia coli K12 948398 NP_418344.3 CDS sodA NC_000913.2 4098833 4099453 D superoxide dismutase, manganese; GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; superoxide dismutase, Mn 4098833..4099453 Escherichia coli K12 948403 NP_418345.2 CDS kdgT NC_000913.2 4099713 4100696 D 2-keto-3-deoxy-D-gluconate transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; 2-keto-3-deoxy-D-gluconate transporter 4099713..4100696 Escherichia coli K12 948407 NP_418346.2 CDS yiiM NC_000913.2 4100845 4101519 D conserved protein 4100845..4101519 Escherichia coli K12 948406 NP_418347.1 CDS cpxA NC_000913.2 4101625 4102998 R probable sensor protein (histidine protein kinase), acting on arcA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; GO_process: xenobiotic metabolic process [goid 0006805]; sensory histidine kinase in two-component regulatory system with CpxR complement(4101625..4102998) Escherichia coli K12 948405 NP_418348.1 CDS cpxR NC_000913.2 4102995 4103693 R transcriptional regulator in 2-component system; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding response regulator in two-component regulatory system with CpxA complement(4102995..4103693) Escherichia coli K12 948404 YP_026277.1 CDS cpxP NC_000913.2 4103843 4104343 D periplasmic repressor of cpx regulon by interaction with CpxA; GO_component: cytoplasm [goid 0005737]; GO_component: periplasmic space [goid 0042597]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; periplasmic protein combats stress 4103843..4104343 Escherichia coli K12 2847688 NP_418350.1 CDS fieF NC_000913.2 4104492 4105394 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; zinc transporter 4104492..4105394 Escherichia coli K12 948413 NP_418351.1 CDS pfkA NC_000913.2 4105575 4106537 D GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 6-phosphofructokinase I 4105575..4106537 Escherichia coli K12 948412 NP_418352.1 CDS sbp NC_000913.2 4106857 4107846 D periplasmic sulfate-binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: sulfur metabolic process [goid 0006790]; sulfate transporter subunit 4106857..4107846 Escherichia coli K12 948411 NP_418353.1 CDS cdh NC_000913.2 4107953 4108708 D CDP-diacylglycerol phosphotidylhydrolase 4107953..4108708 Escherichia coli K12 948410 NP_418354.1 CDS tpiA NC_000913.2 4108763 4109530 R GO_process: glycolysis [goid 0006096]; triosephosphate isomerase complement(4108763..4109530) Escherichia coli K12 948409 NP_418355.1 CDS yiiQ NC_000913.2 4109638 4110237 R conserved protein complement(4109638..4110237) Escherichia coli K12 948408 NP_418356.1 CDS yiiR NC_000913.2 4110338 4110778 D conserved inner membrane protein 4110338..4110778 Escherichia coli K12 948417 NP_418357.1 CDS yiiS NC_000913.2 4110990 4111289 D conserved protein 4110990..4111289 Escherichia coli K12 948416 NP_418358.1 CDS uspD NC_000913.2 4111316 4111744 D putative regulator; GO_process: response to stress [goid 0006950]; stress-induced protein 4111316..4111744 Escherichia coli K12 948415 NP_418359.1 CDS fpr NC_000913.2 4111749 4112495 R GO_process: xenobiotic metabolic process [goid 0006805]; ferredoxin-NADP reductase complement(4111749..4112495) Escherichia coli K12 948414 NP_418360.1 CDS glpX NC_000913.2 4112592 4113602 R unknown function in glycerol metabolism; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid biosynthetic process [goid 0008652]; fructose 1,6-bisphosphatase II complement(4112592..4113602) Escherichia coli K12 948424 NP_418361.1 CDS glpK NC_000913.2 4113737 4115245 R GO_process: glycerol metabolic process [goid 0006071]; glycerol kinase complement(4113737..4115245) Escherichia coli K12 948423 NP_418362.1 CDS glpF NC_000913.2 4115268 4116113 R facilitated diffusion of glycerol; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glycerol metabolic process [goid 0006071]; glycerol facilitator complement(4115268..4116113) Escherichia coli K12 948422 NP_418363.1 CDS yiiU NC_000913.2 4116538 4116783 D conserved protein 4116538..4116783 Escherichia coli K12 948420 NP_418364.1 CDS rraA NC_000913.2 4116868 4117353 R menaquinone biosynthesis, unknown; ribonuclease E (RNase E) inhibitor protein complement(4116868..4117353) Escherichia coli K12 948419 NP_418365.1 CDS menA NC_000913.2 4117446 4118372 R 1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(4117446..4118372) Escherichia coli K12 948418 NP_418366.1 CDS hslU NC_000913.2 4118439 4119770 R heat shock protein hslVU, ATPase subunit, homologous to chaperones; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: proteolysis [goid 0006508]; GO_process: protein folding [goid 0006457]; GO_process: response to temperature stimulus [goid 0009266]; molecular chaperone and ATPase component of HslUV protease complement(4118439..4119770) Escherichia coli K12 948430 NP_418367.1 CDS hslV NC_000913.2 4119780 4120310 R heat shock protein hslVU, proteasome-related peptidase subunit; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: proteolysis [goid 0006508]; GO_process: protein folding [goid 0006457]; peptidase component of the HslUV protease complement(4119780..4120310) Escherichia coli K12 948429 NP_418368.1 CDS ftsN NC_000913.2 4120403 4121362 R GO_component: organelle inner membrane [goid 0019866]; essential cell division protein complement(4120403..4121362) Escherichia coli K12 948428 NP_418369.1 CDS cytR NC_000913.2 4121454 4122479 R regulator for deo operon, udp, cdd, tsx, nupC, and nupG; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(4121454..4122479) Escherichia coli K12 948427 NP_418370.1 CDS priA NC_000913.2 4122635 4124833 R primosomal protein N'(= factor Y)(putative helicase); GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; Primosome factor n' (replication factor Y) complement(4122635..4124833) Escherichia coli K12 948426 NP_418371.1 CDS rpmE NC_000913.2 4125036 4125248 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L31 4125036..4125248 Escherichia coli K12 948425 NP_418372.1 CDS yiiX NC_000913.2 4125309 4125917 R predicted peptidoglycan peptidase complement(4125309..4125917) Escherichia coli K12 948436 NP_418373.1 CDS metJ NC_000913.2 4126101 4126418 R repressor of all met genes but metF; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, S-adenosylmethionine-binding complement(4126101..4126418) Escherichia coli K12 948435 NP_418374.1 CDS metB NC_000913.2 4126695 4127855 D cystathionine gamma-synthase; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: methionine biosynthetic process [goid 0009086]; cystathionine gamma-synthase, PLP-dependent 4126695..4127855 Escherichia coli K12 948434 NP_418375.1 CDS metL NC_000913.2 4127858 4130290 D aspartokinase II and homoserine dehydrogenase II; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: homoserine biosynthetic process [goid 0009090]; fused aspartokinase II/homoserine dehydrogenase II 4127858..4130290 Escherichia coli K12 948433 NP_418376.1 CDS metF NC_000913.2 4130639 4131529 D 5,10-methylenetetrahydrofolate reductase 4130639..4131529 Escherichia coli K12 948432 NP_418377.1 CDS katG NC_000913.2 4131858 4134038 D catalase; hydroperoxidase HPI(I); GO_process: xenobiotic metabolic process [goid 0006805]; catalase/hydroperoxidase HPI(I) 4131858..4134038 Escherichia coli K12 948431 NP_418378.4 CDS yijE NC_000913.2 4134131 4135036 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted permease 4134131..4135036 Escherichia coli K12 948445 NP_418379.1 CDS yijF NC_000913.2 4135063 4135680 R conserved protein complement(4135063..4135680) Escherichia coli K12 948441 NP_418380.4 CDS gldA NC_000913.2 4135955 4137058 R glycerol dehydrogenase, (NAD); GO_process: glycerol metabolic process [goid 0006071]; glycerol dehydrogenase, NAD complement(4135955..4137058) Escherichia coli K12 948440 NP_418381.1 CDS fsaB NC_000913.2 4137069 4137731 R fructose-6-phosphate aldolase 2 complement(4137069..4137731) Escherichia coli K12 948439 YP_026278.1 CDS ptsA NC_000913.2 4137743 4140244 R PEP-protein phosphotransferase system enzyme I; GO_process: carbohydrate catabolic process [goid 0016052]; fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component complement(4137743..4140244) Escherichia coli K12 948437 NP_418384.1 CDS frwC NC_000913.2 4140553 4141632 D PTS system, fructose-like enzyme II component; predicted enzyme IIC component of PTS 4140553..4141632 Escherichia coli K12 948448 NP_418385.1 CDS frwB NC_000913.2 4141647 4141967 D PTS system fructose-like IIB component 1; GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIB component of PTS 4141647..4141967 Escherichia coli K12 948447 NP_418386.1 CDS pflD NC_000913.2 4142018 4144315 D formate acetyltransferase 2; GO_process: anaerobic respiration [goid 0009061]; predicted formate acetyltransferase 2 (pyruvate formate lyase II) 4142018..4144315 Escherichia coli K12 948454 NP_418387.3 CDS pflC NC_000913.2 4144281 4145159 D probable pyruvate formate lyase activating enzyme 2; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; pyruvate formate lyase II activase 4144281..4145159 Escherichia coli K12 948453 NP_418388.1 CDS frwD NC_000913.2 4145161 4145502 D PTS system fructose-like IIB component 2; GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIB component of PTS 4145161..4145502 Escherichia coli K12 948452 NP_418389.1 CDS yijO NC_000913.2 4145489 4146340 R putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(4145489..4146340) Escherichia coli K12 948451 NP_418390.1 CDS yijP NC_000913.2 4146555 4148288 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(4146555..4148288) Escherichia coli K12 948458 NP_418391.1 CDS ppc NC_000913.2 4148470 4151121 R GO_component: cytoplasm [goid 0005737]; GO_process: fermentation [goid 0006113]; GO_process: tricarboxylic acid cycle [goid 0006099]; phosphoenolpyruvate carboxylase complement(4148470..4151121) Escherichia coli K12 948457 NP_418392.1 CDS argE NC_000913.2 4151719 4152870 R GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; acetylornithine deacetylase complement(4151719..4152870) Escherichia coli K12 948456 NP_418393.1 CDS argC NC_000913.2 4153024 4154028 D N-acetyl-gamma-glutamylphosphate reductase; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding 4153024..4154028 Escherichia coli K12 948455 NP_418394.3 CDS argB NC_000913.2 4154036 4154812 D GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; acetylglutamate kinase 4154036..4154812 Escherichia coli K12 948464 NP_418395.1 CDS argH NC_000913.2 4154873 4156246 D GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; argininosuccinate lyase 4154873..4156246 Escherichia coli K12 948463 NP_418396.1 CDS oxyR NC_000913.2 4156513 4157430 D activator, hydrogen peroxide-inducible genes; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 4156513..4157430 Escherichia coli K12 948462 NP_418397.2 CDS sthA NC_000913.2 4157413 4158813 R GO_component: cytoplasm [goid 0005737]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; pyridine nucleotide transhydrogenase, soluble complement(4157413..4158813) Escherichia coli K12 948461 NP_418398.2 CDS fabR NC_000913.2 4159147 4159794 D DNA-binding transcriptional repressor 4159147..4159794 Escherichia coli K12 948460 NP_418399.1 CDS yijD NC_000913.2 4159794 4160153 D conserved inner membrane protein 4159794..4160153 Escherichia coli K12 948459 NP_418400.1 CDS trmA NC_000913.2 4160193 4161293 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA (uracil-5-)-methyltransferase complement(4160193..4161293) Escherichia coli K12 947143 NP_418401.1 CDS btuB NC_000913.2 4161662 4163506 D outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; vitamin B12/cobalamin outer membrane transporter 4161662..4163506 Escherichia coli K12 948468 NP_418402.2 CDS murI NC_000913.2 4163451 4164308 D glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; glutamate racemase 4163451..4164308 Escherichia coli K12 948467 NP_418403.1 CDS murB NC_000913.2 4170080 4171108 D UDP-N-acetylenolpyruvoylglucosamine reductase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding 4170080..4171108 Escherichia coli K12 948470 NP_418404.1 CDS birA NC_000913.2 4171105 4172070 D biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: biotin biosynthetic process [goid 0009102]; GO_process: transcription [goid 0006350]; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor, bio-5'-AMP-binding 4171105..4172070 Escherichia coli K12 948469 NP_418405.1 CDS coaA NC_000913.2 4172099 4173049 R GO_process: coenzyme A biosynthetic process [goid 0015937]; pantothenate kinase complement(4172099..4173049) Escherichia coli K12 948479 NP_418407.1 CDS tufB NC_000913.2 4173967 4175151 D GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; GO_process: response to osmotic stress [goid 0006970]; protein chain elongation factor EF-Tu (duplicate of tufA) 4173967..4175151 Escherichia coli K12 948482 NP_418408.1 CDS secE NC_000913.2 4175381 4175764 D preprotein translocase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; preprotein translocase membrane subunit 4175381..4175764 Escherichia coli K12 948486 NP_418409.1 CDS nusG NC_000913.2 4175766 4176311 D component in transcription antitermination; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; transcription termination factor 4175766..4176311 Escherichia coli K12 948485 NP_418410.1 CDS rplK NC_000913.2 4176470 4176898 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L11 4176470..4176898 Escherichia coli K12 948484 NP_418411.1 CDS rplA NC_000913.2 4176902 4177606 D 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; GO_process: translational attenuation [goid 0009386]; 50S ribosomal subunit protein L1 4176902..4177606 Escherichia coli K12 948483 NP_418412.1 CDS rplJ NC_000913.2 4178019 4178516 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L10 4178019..4178516 Escherichia coli K12 948490 NP_418413.1 CDS rplL NC_000913.2 4178583 4178948 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L7/L12 4178583..4178948 Escherichia coli K12 948489 NP_418414.1 CDS rpoB NC_000913.2 4179268 4183296 D GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, beta subunit 4179268..4183296 Escherichia coli K12 948488 NP_418415.1 CDS rpoC NC_000913.2 4183373 4187596 D GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, beta prime subunit 4183373..4187596 Escherichia coli K12 948487 NP_418416.1 CDS yjaZ NC_000913.2 4187809 4188348 D heat shock protein htrC; GO_process: response to temperature stimulus [goid 0009266]; heat shock protein 4187809..4188348 Escherichia coli K12 948495 NP_418417.1 CDS thiH NC_000913.2 4188758 4189891 R GO_process: thiamin biosynthetic process [goid 0009228]; thiamin biosynthesis ThiGH complex subunit complement(4188758..4189891) Escherichia coli K12 948494 NP_418418.2 CDS thiG NC_000913.2 4189888 4190658 R thiamin (thiazole moiety) biosynthesis protein; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin biosynthesis ThiGH complex subunit complement(4189888..4190658) Escherichia coli K12 948493 YP_026279.1 CDS thiS NC_000913.2 4190660 4190860 R sulfur carrier protein; sulphur carrier protein complement(4190660..4190860) Escherichia coli K12 2847702 NP_418420.4 CDS thiF NC_000913.2 4190844 4191599 R adenylyltransferase; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin (thiazole moiety) biosynthesis protein complement(4190844..4191599) Escherichia coli K12 948500 NP_418421.1 CDS thiE NC_000913.2 4191592 4192227 R thiamin-phosphate synthase (thiamine-phosphate pyrophosphorylase); GO_process: thiamin biosynthetic process [goid 0009228]; thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) complement(4191592..4192227) Escherichia coli K12 948491 NP_418422.1 CDS thiC NC_000913.2 4192227 4194122 R GO_process: thiamin biosynthetic process [goid 0009228]; thiamin (pyrimidine moiety) biosynthesis protein complement(4192227..4194122) Escherichia coli K12 948492 NP_418423.1 CDS rsd NC_000913.2 4194355 4194831 R GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; stationary phase protein, binds sigma 70 RNA polymerase subunit complement(4194355..4194831) Escherichia coli K12 948496 YP_026280.1 CDS nudC NC_000913.2 4194926 4195699 D NADH pyrophosphatase 4194926..4195699 Escherichia coli K12 948498 NP_418425.1 CDS hemE NC_000913.2 4195739 4196803 D uroporphyrinogen decarboxylase 4195739..4196803 Escherichia coli K12 948497 NP_418426.2 CDS nfi NC_000913.2 4196813 4197484 D endonuclease V (deoxyinosine 3'endoduclease); GO_process: DNA catabolic process [goid 0006308]; endonuclease V 4196813..4197484 Escherichia coli K12 948502 NP_418427.1 CDS yjaG NC_000913.2 4197527 4198117 D conserved protein 4197527..4198117 Escherichia coli K12 948501 NP_418428.1 CDS hupA NC_000913.2 4198304 4198576 D DNA-binding protein HU-alpha (HU-2); GO_component: cytoplasm [goid 0005737]; HU, DNA-binding transcriptional regulator, alpha subunit 4198304..4198576 Escherichia coli K12 948499 NP_418429.1 CDS yjaH NC_000913.2 4198589 4199284 D conserved protein 4198589..4199284 Escherichia coli K12 948508 NP_418430.2 CDS zraP NC_000913.2 4199286 4199711 R GO_component: periplasmic space [goid 0042597]; Zn-binding periplasmic protein complement(4199286..4199711) Escherichia coli K12 948507 NP_418431.1 CDS zraS NC_000913.2 4199949 4201346 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with ZraR 4199949..4201346 Escherichia coli K12 948506 NP_418432.1 CDS zraR NC_000913.2 4201343 4202668 D GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fermentation [goid 0006113]; GO_process: transcription [goid 0006350]; fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein 4201343..4202668 Escherichia coli K12 948505 NP_418433.1 CDS purD NC_000913.2 4202665 4203954 R phosphoribosylglycinamide synthetase = GAR synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase complement(4202665..4203954) Escherichia coli K12 948504 NP_418434.1 CDS purH NC_000913.2 4203966 4205555 R GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase complement(4203966..4205555) Escherichia coli K12 948503 NP_418435.1 CDS yjaA NC_000913.2 4211257 4211640 D conserved protein 4211257..4211640 Escherichia coli K12 948515 NP_418436.1 CDS yjaB NC_000913.2 4211703 4212146 R predicted acetyltransferase complement(4211703..4212146) Escherichia coli K12 948514 NP_418437.1 CDS metA NC_000913.2 4212303 4213232 D GO_component: cytoplasm [goid 0005737]; GO_process: methionine biosynthetic process [goid 0009086]; homoserine O-transsuccinylase 4212303..4213232 Escherichia coli K12 948513 NP_418438.1 CDS aceB NC_000913.2 4213501 4215102 D GO_component: cytoplasm [goid 0005737]; GO_process: glyoxylate cycle [goid 0006097]; malate synthase A 4213501..4215102 Escherichia coli K12 948512 NP_418439.1 CDS aceA NC_000913.2 4215132 4216436 D GO_component: cytoplasm [goid 0005737]; GO_process: glyoxylate cycle [goid 0006097]; isocitrate lyase 4215132..4216436 Escherichia coli K12 948517 NP_418440.1 CDS aceK NC_000913.2 4216619 4218355 D GO_process: glyoxylate cycle [goid 0006097]; GO_process: protein modification [goid 0006464]; isocitrate dehydrogenase kinase/phosphatase 4216619..4218355 Escherichia coli K12 944797 NP_418441.1 CDS arpA NC_000913.2 4218324 4220510 R GO_component: cytoplasm [goid 0005737]; ankyrin repeat protein, function unknown complement(4218324..4220510) Escherichia coli K12 944933 NP_418442.2 CDS iclR NC_000913.2 4220827 4221651 R repressor of aceBA operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glyoxylate cycle [goid 0006097]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(4220827..4221651) Escherichia coli K12 948524 NP_418443.1 CDS metH NC_000913.2 4221851 4225534 D B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: S-adenosylmethionine biosynthetic process [goid 0006556]; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent 4221851..4225534 Escherichia coli K12 948522 NP_418444.1 CDS yjbB NC_000913.2 4225754 4227385 D putative alpha helix protein; predicted transporter 4225754..4227385 Escherichia coli K12 948521 NP_418445.1 CDS pepE NC_000913.2 4227476 4228165 R peptidase E, a dipeptidase where amino-terminal residue is aspartate; (alpha)-aspartyl dipeptidase complement(4227476..4228165) Escherichia coli K12 948520 NP_418446.1 CDS rluF NC_000913.2 4228377 4229249 D 23S rRNA pseudouridine synthase 4228377..4229249 Escherichia coli K12 948519 NP_418447.1 CDS pagB NC_000913.2 4229382 4229654 R conserved protein complement(4229382..4229654) Escherichia coli K12 948518 NP_418448.1 CDS lysC NC_000913.2 4229907 4231256 R aspartokinase III, lysine sensitive; GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: homoserine biosynthetic process [goid 0009090]; aspartokinase III complement(4229907..4231256) Escherichia coli K12 948531 NP_418449.1 CDS pgi NC_000913.2 4231781 4233430 D GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; glucosephosphate isomerase 4231781..4233430 Escherichia coli K12 948535 NP_418450.1 CDS yjbE NC_000913.2 4233929 4234171 D predicted protein 4233929..4234171 Escherichia coli K12 948534 NP_418451.4 CDS yjbF NC_000913.2 4234285 4234923 D GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted lipoprotein 4234285..4234923 Escherichia coli K12 948533 NP_418452.1 CDS yjbG NC_000913.2 4234920 4235657 D conserved protein 4234920..4235657 Escherichia coli K12 948526 NP_418453.1 CDS yjbH NC_000913.2 4235657 4237753 D predicted porin 4235657..4237753 Escherichia coli K12 948527 YP_001165332.1 CDS yjbT NC_000913.2 4237800 4238078 R hypothetical protein, no homologs complement(4237800..4238078) Escherichia coli K12 5061528 NP_418454.1 CDS psiE NC_000913.2 4238348 4238758 D predicted phosphate starvation inducible protein 4238348..4238758 Escherichia coli K12 948528 NP_418455.1 CDS xylE NC_000913.2 4238802 4240277 R xylose-proton symport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: D-xylose transport [goid 0015753]; D-xylose transporter complement(4238802..4240277) Escherichia coli K12 948529 NP_418456.1 CDS malG NC_000913.2 4240649 4241539 R part of maltose permease, inner membrane; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose transporter subunit complement(4240649..4241539) Escherichia coli K12 948530 NP_418457.1 CDS malF NC_000913.2 4241554 4243098 R part of maltose permease, periplasmic; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose transporter subunit complement(4241554..4243098) Escherichia coli K12 948532 NP_418458.1 CDS malE NC_000913.2 4243252 4244442 R periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein folding [goid 0006457]; maltose transporter subunit complement(4243252..4244442) Escherichia coli K12 948538 NP_418459.1 CDS malK NC_000913.2 4244807 4245922 D ATP-binding component of transport system for maltose; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein 4244807..4245922 Escherichia coli K12 948537 NP_418460.1 CDS lamB NC_000913.2 4245994 4247334 D phage lambda receptor protein; maltose high-affinity receptor; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; maltose outer membrane porin (maltoporin) 4245994..4247334 Escherichia coli K12 948548 NP_418461.1 CDS malM NC_000913.2 4247577 4248497 D periplasmic protein of mal regulon; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose regulon periplasmic protein 4247577..4248497 Escherichia coli K12 948547 b4038 CDS yjbI NC_000913.2 4248726 4250306 D conserved protein; join(4248726..4248908,4248908..4248982,4248984..4250306) Escherichia coli K12 948546 NP_418463.4 CDS ubiC NC_000913.2 4250529 4251026 D chorismate lyase; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; chorismate pyruvate lyase 4250529..4251026 Escherichia coli K12 948545 NP_418464.1 CDS ubiA NC_000913.2 4251039 4251911 D 4-hydroxybenzoate-octaprenyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; p-hydroxybenzoate octaprenyltransferase 4251039..4251911 Escherichia coli K12 948540 NP_418465.4 CDS plsB NC_000913.2 4252066 4254489 R glycerol-3-phosphate acyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate O-acyltransferase complement(4252066..4254489) Escherichia coli K12 948541 NP_418466.1 CDS dgkA NC_000913.2 4254660 4255028 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; diacylglycerol kinase 4254660..4255028 Escherichia coli K12 948543 NP_418467.1 CDS lexA NC_000913.2 4255138 4255746 D regulator for SOS(lexA) regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: DNA repair [goid 0006281]; GO_process: transcription [goid 0006350]; GO_process: SOS response [goid 0009432]; DNA-binding transcriptional repressor of SOS regulon 4255138..4255746 Escherichia coli K12 948544 NP_418468.3 CDS dinF NC_000913.2 4255765 4257144 D DNA-damage-inducible protein F; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; DNA-damage-inducible SOS response protein 4255765..4257144 Escherichia coli K12 948554 NP_418469.1 CDS yjbJ NC_000913.2 4257260 4257469 D predicted stress response protein 4257260..4257469 Escherichia coli K12 948553 NP_418470.4 CDS zur NC_000913.2 4257511 4258026 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, Zn(II)-binding complement(4257511..4258026) Escherichia coli K12 948552 NP_418471.1 CDS yjbL NC_000913.2 4258344 4258598 D predicted protein 4258344..4258598 Escherichia coli K12 948551 NP_418472.1 CDS yjbM NC_000913.2 4258622 4259329 D predicted protein 4258622..4259329 Escherichia coli K12 948550 NP_418473.2 CDS dusA NC_000913.2 4259737 4260729 D tRNA-dihydrouridine synthase A 4259737..4260729 Escherichia coli K12 948558 NP_418474.4 CDS pspG NC_000913.2 4260863 4261105 D phage shock protein G 4260863..4261105 Escherichia coli K12 948557 NP_418475.1 CDS qor NC_000913.2 4261271 4262254 R quinone oxidoreductase; GO_function: electron carrier activity [goid 0009055]; quinone oxidoreductase, NADPH-dependent complement(4261271..4262254) Escherichia coli K12 948556 NP_418476.1 CDS dnaB NC_000913.2 4262337 4263752 D replicative DNA helicase; part of primosome; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; replicative DNA helicase 4262337..4263752 Escherichia coli K12 948555 NP_418477.1 CDS alr NC_000913.2 4263805 4264884 D alanine racemase 1; GO_process: alanine biosynthetic process [goid 0006523]; alanine racemase 1, PLP-binding, biosynthetic 4263805..4264884 Escherichia coli K12 948564 NP_418478.1 CDS tyrB NC_000913.2 4265137 4266330 D tyrosine aminotransferase, tyrosine repressible; GO_component: cytoplasm [goid 0005737]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; GO_process: leucine biosynthetic process [goid 0009098]; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent 4265137..4266330 Escherichia coli K12 948563 YP_001165333.1 CDS yjbS NC_000913.2 4266832 4267035 R hypothetical protein complement(4266832..4267035) Escherichia coli K12 5061529 NP_418479.1 CDS aphA NC_000913.2 4267437 4268150 D diadenosine tetraphosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; acid phosphatase/phosphotransferase, class B, non-specific 4267437..4268150 Escherichia coli K12 948562 NP_418480.1 CDS yjbQ NC_000913.2 4268261 4268677 D conserved protein 4268261..4268677 Escherichia coli K12 948561 NP_418481.1 CDS yjbR NC_000913.2 4268681 4269037 D conserved protein 4268681..4269037 Escherichia coli K12 948560 NP_418482.1 CDS uvrA NC_000913.2 4269072 4271894 R excision nuclease subunit A; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC complement(4269072..4271894) Escherichia coli K12 948559 NP_418483.1 CDS ssb NC_000913.2 4272148 4272684 D ssDNA-binding protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; GO_process: SOS response [goid 0009432]; single-stranded DNA-binding protein 4272148..4272684 Escherichia coli K12 948570 NP_418484.4 CDS yjcB NC_000913.2 4272783 4273064 R predicted inner membrane protein complement(4272783..4273064) Escherichia coli K12 948569 NP_418485.1 CDS yjcC NC_000913.2 4273494 4275080 D predicted signal transduction protein (EAL domain containing protein) 4273494..4275080 Escherichia coli K12 948568 NP_418486.1 CDS soxS NC_000913.2 4275083 4275406 R regulation of superoxide response regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual regulator complement(4275083..4275406) Escherichia coli K12 948567 NP_418487.1 CDS soxR NC_000913.2 4275492 4275956 D redox-sensing activator of soxS; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing 4275492..4275956 Escherichia coli K12 948566 NP_418488.1 CDS yjcD NC_000913.2 4276502 4277851 D predicted permease 4276502..4277851 Escherichia coli K12 948565 NP_418489.1 CDS yjcE NC_000913.2 4278003 4279652 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cation/proton antiporter 4278003..4279652 Escherichia coli K12 948577 NP_418490.1 CDS yjcF NC_000913.2 4279806 4281098 R conserved protein complement(4279806..4281098) Escherichia coli K12 948576 NP_418491.1 CDS actP NC_000913.2 4281276 4282925 R acetate permease also transports glycolate with a rate high enough to support growth on this carbon source; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; acetate transporter complement(4281276..4282925) Escherichia coli K12 948575 NP_418492.1 CDS yjcH NC_000913.2 4282922 4283236 R conserved inner membrane protein involved in acetate transport complement(4282922..4283236) Escherichia coli K12 948574 NP_418493.1 CDS acs NC_000913.2 4283436 4285394 R GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: acetate catabolic process [goid 0045733]; acetyl-CoA synthetase complement(4283436..4285394) Escherichia coli K12 948572 NP_418494.1 CDS nrfA NC_000913.2 4285787 4287223 D periplasmic cytochrome c(552): plays a role in nitrite reduction; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrite reductase, formate-dependent, cytochrome 4285787..4287223 Escherichia coli K12 948571 NP_418495.2 CDS nrfB NC_000913.2 4287268 4287834 D formate-dependent nitrite reductase; a penta-haeme cytochrome c; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrite reductase, formate-dependent, penta-heme cytochrome c 4287268..4287834 Escherichia coli K12 948573 NP_418496.1 CDS nrfC NC_000913.2 4287831 4288502 D formate-dependent nitrite reductase; Fe-S centers; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; formate-dependent nitrite reductase, 4Fe4S subunit 4287831..4288502 Escherichia coli K12 948581 NP_418497.1 CDS nrfD NC_000913.2 4288499 4289455 D formate-dependent nitrate reductase complex; transmembrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; formate-dependent nitrite reductase, membrane subunit 4288499..4289455 Escherichia coli K12 948580 NP_418498.1 CDS nrfE NC_000913.2 4289535 4291193 D formate-dependent nitrite reductase; possible assembly function; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE 4289535..4291193 Escherichia coli K12 948579 NP_418499.1 CDS nrfF NC_000913.2 4291186 4291569 D part of formate-dependent nitrite reductase complex; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF 4291186..4291569 Escherichia coli K12 948578 NP_418500.1 CDS nrfG NC_000913.2 4291566 4292162 D part of formate-dependent nitrite reductase complex; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG 4291566..4292162 Escherichia coli K12 948592 NP_418501.1 CDS gltP NC_000913.2 4292504 4293817 D glutamate-aspartate symport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate/aspartate:proton symporter 4292504..4293817 Escherichia coli K12 948591 NP_418502.1 CDS yjcO NC_000913.2 4294459 4295148 R conserved protein complement(4294459..4295148) Escherichia coli K12 948586 NP_418503.1 CDS fdhF NC_000913.2 4295242 4297389 R selenopolypeptide subunit of formate dehydrogenase H; GO_function: electron donor activity [goid 0009053]; GO_process: fermentation [goid 0006113]; formate dehydrogenase-H, selenopolypeptide subunit complement(4295242..4297389) Escherichia coli K12 948584 NP_418504.1 CDS mdtP NC_000913.2 4297587 4299053 R putative enzyme; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane factor of efflux pump complement(4297587..4299053) Escherichia coli K12 948583 NP_418505.2 CDS mdtO NC_000913.2 4299050 4301101 R putative enzyme; predicted multidrug efflux system component complement(4299050..4301101) Escherichia coli K12 948582 NP_418506.1 CDS mdtN NC_000913.2 4301101 4302132 R putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted membrane fusion protein of efflux pump complement(4301101..4302132) Escherichia coli K12 948598 YP_001165334.1 CDS ytcA NC_000913.2 4302151 4302426 R hypothetical protein complement(4302151..4302426) Escherichia coli K12 5061530 NP_418507.2 CDS yjcS NC_000913.2 4302635 4304620 R GO_process: sulfur metabolic process [goid 0006790]; predicted alkyl sulfatase complement(4302635..4304620) Escherichia coli K12 948597 NP_418508.1 CDS alsK NC_000913.2 4304893 4305822 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; D-allose kinase complement(4304893..4305822) Escherichia coli K12 948596 NP_418509.1 CDS alsE NC_000913.2 4305806 4306501 R allulose-6-phosphate 3-epimerase complement(4305806..4306501) Escherichia coli K12 948595 NP_418510.1 CDS alsC NC_000913.2 4306512 4307492 R membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-allose transporter subunit complement(4306512..4307492) Escherichia coli K12 948594 NP_418511.1 CDS alsA NC_000913.2 4307471 4309003 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused D-allose transporter subunits of ABC superfamily: ATP-binding components complement(4307471..4309003) Escherichia coli K12 948593 NP_418512.1 CDS alsB NC_000913.2 4309130 4310065 R periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; D-allose transporter subunit complement(4309130..4310065) Escherichia coli K12 948604 NP_418513.4 CDS rpiR NC_000913.2 4310124 4311014 R transcriptional repressor of rpiB expression; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor complement(4310124..4311014) Escherichia coli K12 948603 NP_418514.1 CDS rpiB NC_000913.2 4311373 4311822 D ribose 5-phosphate isomerase B; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; ribose 5-phosphate isomerase B/allose 6-phosphate isomerase 4311373..4311822 Escherichia coli K12 948602 YP_026281.1 CDS yjdP NC_000913.2 4311891 4312220 D conserved hypothetical protein conserved in EDL933 and CFT073; on opposite strand of the now deaccessioned phnQ (b4091); conserved protein 4311891..4312220 Escherichia coli K12 2847754 NP_418516.1 CDS phnP NC_000913.2 4312367 4313125 R phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex accessory protein complement(4312367..4313125) Escherichia coli K12 948600 NP_418517.1 CDS phnO NC_000913.2 4313127 4313561 R putative regulator, phn operon; predicted acyltransferase with acyl-CoA N-acyltransferase domain complement(4313127..4313561) Escherichia coli K12 948599 NP_418518.1 CDS phnN NC_000913.2 4313548 4314105 R ATP-binding component of phosphonate transport; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; ribose 1,5-bisphosphokinase complement(4313548..4314105) Escherichia coli K12 948608 NP_418519.1 CDS phnM NC_000913.2 4314105 4315241 R phosphonate metabolism; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit complement(4314105..4315241) Escherichia coli K12 948613 NP_418520.1 CDS phnL NC_000913.2 4315238 4315918 R ATP-binding component of phosphonate transport; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit complement(4315238..4315918) Escherichia coli K12 948612 YP_026282.1 CDS phnK NC_000913.2 4316029 4316787 R ATP-binding component of phosphonate transport; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit complement(4316029..4316787) Escherichia coli K12 948611 NP_418522.1 CDS phnJ NC_000913.2 4316784 4317629 R phosphonate metabolism; carbon-phosphorus lyase complex subunit complement(4316784..4317629) Escherichia coli K12 948606 NP_418523.1 CDS phnI NC_000913.2 4317622 4318686 R phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit complement(4317622..4318686) Escherichia coli K12 948605 NP_418524.1 CDS phnH NC_000913.2 4318686 4319270 R phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit complement(4318686..4319270) Escherichia coli K12 948619 NP_418525.1 CDS phnG NC_000913.2 4319267 4319719 R phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit complement(4319267..4319719) Escherichia coli K12 948618 NP_418526.1 CDS phnF NC_000913.2 4319720 4320445 R putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation complement(4319720..4320445) Escherichia coli K12 948617 b4104 CDS phnE NC_000913.2 4320466 4321253 R phosphonate/organophosphate ester transporter subunit;transport; Transport of small molecules: Anions membrane channel protein component of Pn transporter; membrane component of ABC superfamily; complement(join(4320466..4320837,4320828..4321253)) Escherichia coli K12 948625 NP_418529.1 CDS phnD NC_000913.2 4321359 4322375 R periplasmic binding protein component of Pn transporter; periplasmic binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; phosphonate/organophosphate ester transporter subunit complement(4321359..4322375) Escherichia coli K12 948624 NP_418530.1 CDS phnC NC_000913.2 4322400 4323188 R ATP-binding component of phosphonate transport; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; phosphonate/organophosphate ester transporter subunit complement(4322400..4323188) Escherichia coli K12 948623 NP_418531.1 CDS yjdN NC_000913.2 4323321 4323764 R conserved protein complement(4323321..4323764) Escherichia coli K12 948622 NP_418532.1 CDS yjdM NC_000913.2 4324422 4324757 R conserved protein complement(4324422..4324757) Escherichia coli K12 948621 NP_418533.1 CDS yjdA NC_000913.2 4325158 4327386 D putative vimentin; conserved protein with nucleoside triphosphate hydrolase domain 4325158..4327386 Escherichia coli K12 948620 NP_418534.4 CDS yjcZ NC_000913.2 4327383 4328261 D conserved protein 4327383..4328261 Escherichia coli K12 948633 NP_418535.1 CDS proP NC_000913.2 4328525 4330027 D low-affinity transport system; proline permease II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: proline biosynthetic process [goid 0006561]; GO_process: response to osmotic stress [goid 0006970]; proline/glycine betaine transporter 4328525..4330027 Escherichia coli K12 948626 NP_418536.1 CDS basS NC_000913.2 4330204 4331295 R sensor protein for basR; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with BasR complement(4330204..4331295) Escherichia coli K12 948632 NP_418537.1 CDS basR NC_000913.2 4331305 4331973 R transcriptional regulatory protein, member of 2-component regulatory system; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with BasS complement(4331305..4331973) Escherichia coli K12 948631 NP_418538.2 CDS eptA NC_000913.2 4331970 4333613 R GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted metal dependent hydrolase complement(4331970..4333613) Escherichia coli K12 948629 NP_418539.1 CDS adiC NC_000913.2 4333717 4335054 R putative amino acid/amine transport protein, cryptic; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: putrescine:ornithine antiporter activity [goid 0015496]; arginine:agmatin complement(4333717..4335054) Escherichia coli K12 948628 NP_418540.1 CDS adiY NC_000913.2 4335191 4335952 R putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(4335191..4335952) Escherichia coli K12 948627 NP_418541.1 CDS adiA NC_000913.2 4336277 4338547 R GO_process: amino acid catabolic process [goid 0009063]; biodegradative arginine decarboxylase complement(4336277..4338547) Escherichia coli K12 948638 NP_418542.1 CDS melR NC_000913.2 4338743 4339651 R regulator of melibiose operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(4338743..4339651) Escherichia coli K12 948637 NP_418543.1 CDS melA NC_000913.2 4339934 4341289 D alpha-galactosidase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; alpha-galactosidase, NAD(P)-binding 4339934..4341289 Escherichia coli K12 948636 NP_418544.1 CDS melB NC_000913.2 4341404 4342813 D melibiose permease II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; melibiose:sodium symporter 4341404..4342813 Escherichia coli K12 948635 NP_418545.1 CDS yjdF NC_000913.2 4342952 4343581 R conserved inner membrane protein complement(4342952..4343581) Escherichia coli K12 948634 NP_418546.1 CDS fumB NC_000913.2 4343703 4345349 R fumarase B= fumarate hydratase Class I; anaerobic isozyme; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; anaerobic class I fumarate hydratase (fumarase B) complement(4343703..4345349) Escherichia coli K12 948642 NP_418547.1 CDS dcuB NC_000913.2 4345427 4346767 R anaerobic dicarboxylate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; C4-dicarboxylate antiporter complement(4345427..4346767) Escherichia coli K12 948641 NP_418548.1 CDS dcuR NC_000913.2 4347338 4348057 R GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with DcuS complement(4347338..4348057) Escherichia coli K12 948640 NP_418549.1 CDS dcuS NC_000913.2 4348054 4349685 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration complement(4348054..4349685) Escherichia coli K12 948639 NP_418550.1 CDS yjdI NC_000913.2 4349866 4350096 D conserved protein 4349866..4350096 Escherichia coli K12 948648 NP_418551.1 CDS yjdJ NC_000913.2 4350108 4350380 D predicted acyltransferase with acyl-CoA N-acyltransferase domain 4350108..4350380 Escherichia coli K12 948647 NP_418552.1 CDS yjdK NC_000913.2 4350607 4350903 D predicted protein 4350607..4350903 Escherichia coli K12 948646 YP_588474.1 CDS yjdO NC_000913.2 4350931 4351104 D GO_component: integral to membrane [goid 0016021]; predicted protein 4350931..4351104 Escherichia coli K12 1450308 NP_418553.1 CDS lysU NC_000913.2 4351223 4352740 R lysine tRNA synthetase, inducible; heat shock protein; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; lysine tRNA synthetase, inducible complement(4351223..4352740) Escherichia coli K12 948645 NP_418554.1 CDS yjdL NC_000913.2 4352977 4354434 R putative peptide transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(4352977..4354434) Escherichia coli K12 948644 NP_418555.1 CDS cadA NC_000913.2 4354493 4356640 R GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; lysine decarboxylase 1 complement(4354493..4356640) Escherichia coli K12 948643 NP_418556.1 CDS cadB NC_000913.2 4356720 4358054 R transport of lysine/cadaverine; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; predicted lysine/cadaverine transporter complement(4356720..4358054) Escherichia coli K12 948654 NP_418557.1 CDS cadC NC_000913.2 4358419 4359957 R transcriptional activator of cad operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(4358419..4359957) Escherichia coli K12 948653 b4654 CDS yjdQ NC_000913.2 4360214 4360376 R pseudogene, P4-like integrase remnant; complement(join(4360214..4360294,4360293..4360376)) Escherichia coli K12 5625580 NP_418558.2 CDS yjdC NC_000913.2 4360756 4361331 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator complement(4360756..4361331) Escherichia coli K12 948650 NP_418559.1 CDS dipZ NC_000913.2 4361368 4363065 R thiol:disulfide interchange protein; copper tolerance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: cytochrome complex assembly [goid 0017004]; fused thiol:disulfide interchange protein: activator of DsbC/conserved protein complement(4361368..4363065) Escherichia coli K12 948649 NP_418560.1 CDS cutA NC_000913.2 4363041 4363379 R divalent cation tolerance protein; cytochrome c biogenesis; GO_process: cytochrome complex assembly [goid 0017004]; copper binding protein, copper sensitivity complement(4363041..4363379) Escherichia coli K12 948660 NP_418561.1 CDS dcuA NC_000913.2 4363495 4364796 R anaerobic dicarboxylate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; C4-dicarboxylate antiporter complement(4363495..4364796) Escherichia coli K12 948659 NP_418562.4 CDS aspA NC_000913.2 4364914 4366350 R aspartate ammonia-lyase (aspartase); GO_component: cytoplasm [goid 0005737]; GO_process: amino acid metabolic process [goid 0006520]; GO_process: asparagine biosynthetic process [goid 0006529]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; aspartate ammonia-lyase complement(4364914..4366350) Escherichia coli K12 948658 NP_418564.2 CDS fxsA NC_000913.2 4366687 4367163 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; inner membrane protein 4366687..4367163 Escherichia coli K12 948657 NP_418565.1 CDS yjeH NC_000913.2 4367179 4368435 R putative transport; predicted transporter complement(4367179..4368435) Escherichia coli K12 948656 NP_418566.1 CDS groS NC_000913.2 4368711 4369004 D GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; Cpn10 chaperonin GroES, small subunit of GroESL 4368711..4369004 Escherichia coli K12 948655 NP_418567.1 CDS groL NC_000913.2 4369048 4370694 D GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; Cpn60 chaperonin GroEL, large subunit of GroESL 4369048..4370694 Escherichia coli K12 948665 NP_418568.2 CDS yjeI NC_000913.2 4370832 4371185 D conserved protein 4370832..4371185 Escherichia coli K12 948664 NP_418569.1 CDS yjeJ NC_000913.2 4371388 4372257 R predicted protein complement(4371388..4372257) Escherichia coli K12 948663 NP_418570.1 CDS yjeK NC_000913.2 4372652 4373680 R predicted lysine aminomutase complement(4372652..4373680) Escherichia coli K12 948662 NP_418571.1 CDS efp NC_000913.2 4373722 4374288 D elongation factor P (EF-P); GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; Elongation factor EF-P 4373722..4374288 Escherichia coli K12 948661 YP_026283.1 CDS ecnA NC_000913.2 4374340 4374465 D entericidin A antidote to lipoprotein entericidin B; component of a chromosomally encoded addiction module; entericidin A membrane lipoprotein, antidote entericidin B 4374340..4374465 Escherichia coli K12 2847736 YP_026284.1 CDS ecnB NC_000913.2 4374576 4374722 D entericidin B bacteriolytic lipoprotein; component of a chromosomally encoded addiction module; entericidin B membrane lipoprotein 4374576..4374722 Escherichia coli K12 2847737 NP_418572.4 CDS sugE NC_000913.2 4374898 4375215 D suppresses groEL, may be chaperone; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 4374898..4375215 Escherichia coli K12 948671 NP_418573.1 CDS blc NC_000913.2 4375212 4375745 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane lipoprotein (lipocalin) complement(4375212..4375745) Escherichia coli K12 948670 NP_418574.1 CDS ampC NC_000913.2 4375834 4376967 R beta-lactamase; penicillin resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; beta-lactamase/D-alanine carboxypeptidase complement(4375834..4376967) Escherichia coli K12 948669 NP_418575.1 CDS frdD NC_000913.2 4377030 4377389 R fumarate reductase, anaerobic, membrane anchor polypeptide; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic), membrane anchor subunit complement(4377030..4377389) Escherichia coli K12 948668 NP_418576.1 CDS frdC NC_000913.2 4377400 4377795 R fumarate reductase, anaerobic, membrane anchor polypeptide; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic), membrane anchor subunit complement(4377400..4377795) Escherichia coli K12 948680 NP_418577.1 CDS frdB NC_000913.2 4377806 4378540 R fumarate reductase, anaerobic, iron-sulfur protein subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic), Fe-S subunit complement(4377806..4378540) Escherichia coli K12 948666 NP_418578.1 CDS frdA NC_000913.2 4378533 4380341 R fumarate reductase, anaerobic, flavoprotein subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit complement(4378533..4380341) Escherichia coli K12 948667 NP_418579.2 CDS poxA NC_000913.2 4380666 4381643 D putative lysyl-tRNA synthetase; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; predicted lysyl-tRNA synthetase 4380666..4381643 Escherichia coli K12 948672 NP_418580.2 CDS yjeM NC_000913.2 4381862 4383364 D putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4381862..4383364 Escherichia coli K12 948679 NP_418581.1 CDS yjeN NC_000913.2 4383416 4383730 D predicted protein 4383416..4383730 Escherichia coli K12 948678 NP_418582.1 CDS yjeO NC_000913.2 4383727 4384041 D conserved inner membrane protein 4383727..4384041 Escherichia coli K12 948677 NP_418583.1 CDS yjeP NC_000913.2 4384070 4387393 R putative periplasmic binding protein; GO_component: periplasmic space [goid 0042597]; predicted mechanosensitive channel complement(4384070..4387393) Escherichia coli K12 948676 NP_418584.1 CDS psd NC_000913.2 4387415 4388383 R phosphatidylserine decarboxylase; phospholipid synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylserine decarboxylase complement(4387415..4388383) Escherichia coli K12 948673 NP_418585.4 CDS rsgA NC_000913.2 4388480 4389532 R ribosome small subunit-dependent GTPase A complement(4388480..4389532) Escherichia coli K12 948674 NP_418586.4 CDS orn NC_000913.2 4389627 4390172 D GO_process: RNA catabolic process [goid 0006401]; oligoribonuclease 4389627..4390172 Escherichia coli K12 948675 NP_418587.1 CDS yjeS NC_000913.2 4390951 4392090 R predicted Fe-S electron transport protein complement(4390951..4392090) Escherichia coli K12 948686 NP_418588.1 CDS yjeF NC_000913.2 4392089 4393636 D predicted carbohydrate kinase 4392089..4393636 Escherichia coli K12 948685 NP_418589.1 CDS yjeE NC_000913.2 4393608 4394069 D ATPase with strong ADP affinity 4393608..4394069 Escherichia coli K12 948684 NP_418590.1 CDS amiB NC_000913.2 4394088 4395425 D N-acetylmuramoyl-l-alanine amidase II; a murein hydrolase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylmuramoyl-l-alanine amidase II 4394088..4395425 Escherichia coli K12 948683 NP_418591.1 CDS mutL NC_000913.2 4395435 4397282 D enzyme in methyl-directed mismatch repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; methyl-directed mismatch repair protein 4395435..4397282 Escherichia coli K12 948691 NP_418592.1 CDS miaA NC_000913.2 4397275 4398225 D GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 4397275..4398225 Escherichia coli K12 948690 NP_418593.1 CDS hfq NC_000913.2 4398311 4398619 D host factor I for bacteriophage Q beta replication, a growth-related protein; GO_process: translational attenuation [goid 0009386]; HF-I, host factor for RNA phage Q beta replication 4398311..4398619 Escherichia coli K12 948689 NP_418594.1 CDS hflX NC_000913.2 4398695 4399975 D GTP - binding subunit of protease specific for phage lambda cII repressor; predicted GTPase 4398695..4399975 Escherichia coli K12 948688 NP_418595.1 CDS hflK NC_000913.2 4400061 4401320 D protease specific for phage lambda cII repressor; modulator for HflB protease specific for phage lambda cII repressor 4400061..4401320 Escherichia coli K12 948698 NP_418596.1 CDS hflC NC_000913.2 4401323 4402327 D protease specific for phage lambda cII repressor; modulator for HflB protease specific for phage lambda cII repressor 4401323..4402327 Escherichia coli K12 948697 NP_418597.1 CDS yjeT NC_000913.2 4402409 4402606 D conserved inner membrane protein 4402409..4402606 Escherichia coli K12 948696 NP_418598.1 CDS purA NC_000913.2 4402710 4404008 D GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; adenylosuccinate synthetase 4402710..4404008 Escherichia coli K12 948695 NP_418599.1 CDS nsrR NC_000913.2 4404213 4404638 D predicted DNA-binding transcriptional regulator 4404213..4404638 Escherichia coli K12 948693 NP_418600.4 CDS rnr NC_000913.2 4404677 4407118 D GO_process: RNA catabolic process [goid 0006401]; exoribonuclease R, RNase R 4404677..4407118 Escherichia coli K12 948692 NP_418601.1 CDS rlmB NC_000913.2 4407298 4408029 D GO_process: RNA modification [goid 0009451]; 23S rRNA (Gm2251)-methyltransferase 4407298..4408029 Escherichia coli K12 948694 NP_418602.1 CDS yjfI NC_000913.2 4408156 4408557 D conserved protein 4408156..4408557 Escherichia coli K12 948704 NP_418603.1 CDS yjfJ NC_000913.2 4408576 4409274 D putative alpha helical protein; predicted transcriptional regulator effector protein 4408576..4409274 Escherichia coli K12 948703 NP_418604.1 CDS yjfK NC_000913.2 4409325 4409984 D conserved protein 4409325..4409984 Escherichia coli K12 948702 NP_418605.1 CDS yjfL NC_000913.2 4410002 4410400 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4410002..4410400 Escherichia coli K12 948701 NP_418606.1 CDS yjfM NC_000913.2 4410410 4411048 D conserved protein 4410410..4411048 Escherichia coli K12 948700 NP_418607.1 CDS yjfC NC_000913.2 4411051 4412214 D putative synthetase/amidase; predicted synthetase/amidase 4411051..4412214 Escherichia coli K12 948699 NP_418608.6 CDS aidB NC_000913.2 4412298 4413923 D putative acyl coenzyme A dehydrogenase; GO_process: response to stress [goid 0006950]; isovaleryl CoA dehydrogenase 4412298..4413923 Escherichia coli K12 948710 NP_418609.4 CDS yjfN NC_000913.2 4414040 4414315 R predicted protein complement(4414040..4414315) Escherichia coli K12 948709 NP_418610.4 CDS yjfO NC_000913.2 4414464 4414793 R conserved protein complement(4414464..4414793) Escherichia coli K12 948708 NP_418611.1 CDS yjfP NC_000913.2 4414975 4415724 D predicted hydrolase 4414975..4415724 Escherichia coli K12 948707 NP_418612.1 CDS ulaR NC_000913.2 4415721 4416476 R putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator complement(4415721..4416476) Escherichia coli K12 948706 NP_418613.2 CDS ulaG NC_000913.2 4416584 4417648 R predicted L-ascorbate 6-phosphate lactonase complement(4416584..4417648) Escherichia coli K12 948705 NP_418614.4 CDS ulaA NC_000913.2 4418003 4419400 D GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; L-ascorbate-specific enzyme IIC component of PTS 4418003..4419400 Escherichia coli K12 948717 NP_418615.1 CDS ulaB NC_000913.2 4419416 4419721 D GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; L-ascorbate-specific enzyme IIB component of PTS 4419416..4419721 Escherichia coli K12 948716 NP_418616.1 CDS ulaC NC_000913.2 4419731 4420195 D putative PTS system enzyme II A component; L-ascorbate-specific enzyme IIA component of PTS 4419731..4420195 Escherichia coli K12 948715 NP_418617.1 CDS ulaD NC_000913.2 4420209 4420859 D probable hexulose-6-phosphate synthase; 3-keto-L-gulonate 6-phosphate decarboxylase 4420209..4420859 Escherichia coli K12 948714 NP_418618.1 CDS ulaE NC_000913.2 4420869 4421723 D putative hexulose-6-phosphate isomerase; L-xylulose 5-phosphate 3-epimerase 4420869..4421723 Escherichia coli K12 948712 NP_418619.1 CDS ulaF NC_000913.2 4421723 4422409 D putative epimerase/aldolase; L-ribulose 5-phosphate 4-epimerase 4421723..4422409 Escherichia coli K12 948711 NP_418620.1 CDS yjfY NC_000913.2 4422539 4422814 R predicted protein complement(4422539..4422814) Escherichia coli K12 948713 NP_418621.1 CDS rpsF NC_000913.2 4423141 4423536 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S6 4423141..4423536 Escherichia coli K12 948723 NP_418622.1 CDS priB NC_000913.2 4423543 4423857 D primosomal replication protein N; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; primosomal protein N 4423543..4423857 Escherichia coli K12 948722 NP_418623.1 CDS rpsR NC_000913.2 4423862 4424089 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S18 4423862..4424089 Escherichia coli K12 948721 NP_418624.1 CDS rplI NC_000913.2 4424131 4424580 D GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L9 4424131..4424580 Escherichia coli K12 948720 NP_418625.1 CDS yjfZ NC_000913.2 4424651 4425445 R predicted protein complement(4424651..4425445) Escherichia coli K12 948719 b4205 CDS ytfA NC_000913.2 4425717 4426118 D pseudogene, predicted transcriptional regulator; 4425717..4426118 Escherichia coli K12 948718 NP_418627.4 CDS ytfB NC_000913.2 4426102 4426740 R predicted cell envelope opacity-associated protein complement(4426102..4426740) Escherichia coli K12 948727 NP_418628.4 CDS fklB NC_000913.2 4426958 4427578 D FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); GO_process: protein folding [goid 0006457]; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 4426958..4427578 Escherichia coli K12 948726 NP_418629.1 CDS cycA NC_000913.2 4427887 4429299 D transport of D-alanine, D-serine, and glycine; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: alanine biosynthetic process [goid 0006523]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: glutathione biosynthetic process [goid 0006750]; D-alanine/D-serine/glycine transporter 4427887..4429299 Escherichia coli K12 948725 NP_418630.1 CDS ytfE NC_000913.2 4429344 4430006 R predicted regulator of cell morphogenesis and cell wall metabolism complement(4429344..4430006) Escherichia coli K12 948724 NP_418631.1 CDS ytfF NC_000913.2 4430114 4431088 R putative transmembrane subunit; predicted inner membrane protein complement(4430114..4431088) Escherichia coli K12 948732 NP_418632.1 CDS ytfG NC_000913.2 4431187 4432047 R putative oxidoreductase; NAD(P)H:quinone oxidoreductase complement(4431187..4432047) Escherichia coli K12 948731 NP_418633.4 CDS ytfH NC_000913.2 4432136 4432516 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 4432136..4432516 Escherichia coli K12 948730 NP_418634.1 CDS cpdB NC_000913.2 4432645 4434588 R GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 2':3'-cyclic-nucleotide 2'-phosphodiesterase complement(4432645..4434588) Escherichia coli K12 948729 NP_418635.1 CDS cysQ NC_000913.2 4434778 4435518 D affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis; GO_process: sulfur metabolic process [goid 0006790]; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase 4434778..4435518 Escherichia coli K12 948728 YP_026285.1 CDS ytfI NC_000913.2 4435730 4436668 D predicted protein 4435730..4436668 Escherichia coli K12 948738 NP_418637.1 CDS ytfJ NC_000913.2 4436731 4437285 R predicted transcriptional regulator complement(4436731..4437285) Escherichia coli K12 948737 NP_418638.2 CDS ytfK NC_000913.2 4437610 4437816 D conserved protein 4437610..4437816 Escherichia coli K12 948736 NP_418639.1 CDS ytfL NC_000913.2 4437895 4439238 R putative transport protein; predicted inner membrane protein complement(4437895..4439238) Escherichia coli K12 948735 NP_418640.1 CDS msrA NC_000913.2 4439561 4440199 R peptide methionine sulfoxide reductase; GO_process: protein folding [goid 0006457]; methionine sulfoxide reductase A complement(4439561..4440199) Escherichia coli K12 948734 NP_418641.1 CDS ytfM NC_000913.2 4440405 4442138 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein and surface antigen 4440405..4442138 Escherichia coli K12 948733 NP_418642.1 CDS ytfN NC_000913.2 4442135 4445914 D conserved protein 4442135..4445914 Escherichia coli K12 948742 NP_418643.1 CDS ytfP NC_000913.2 4445917 4446258 D conserved protein 4445917..4446258 Escherichia coli K12 948741 NP_418645.2 CDS chpS NC_000913.2 4446470 4446721 D suppressor of inhibitory function of ChpB, PemI-like, autoregulated; antitoxin of the ChpB-ChpS toxin-antitoxin system 4446470..4446721 Escherichia coli K12 948739 NP_418646.1 CDS chpB NC_000913.2 4446715 4447065 D probable growth inhibitor, PemK-like, autoregulated; toxin of the ChpB-ChpS toxin-antitoxin system 4446715..4447065 Escherichia coli K12 948747 NP_418647.1 CDS ppa NC_000913.2 4447145 4447675 R GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; inorganic pyrophosphatase complement(4447145..4447675) Escherichia coli K12 948748 NP_418648.1 CDS ytfQ NC_000913.2 4447985 4448941 D putative LACI-type transcriptional regulator; GO_component: periplasmic space [goid 0042597]; predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily 4447985..4448941 Escherichia coli K12 948746 YP_026286.1 CDS ytfR NC_000913.2 4449081 4450583 D putative sugar transport protein (ABC superfamily, atp_bind); GO_component: cytoplasm [goid 0005737]; predicted sugar transporter subunit: ATP-binding component of ABC superfamily 4449081..4450583 Escherichia coli K12 2847725 NP_418651.3 CDS ytfT NC_000913.2 4450594 4451619 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 4450594..4451619 Escherichia coli K12 948743 NP_418652.2 CDS yjfF NC_000913.2 4451606 4452601 D putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 4451606..4452601 Escherichia coli K12 948754 NP_418653.1 CDS fbp NC_000913.2 4452634 4453632 R GO_component: cytoplasm [goid 0005737]; GO_process: gluconeogenesis [goid 0006094]; fructose-1,6-bisphosphatase I complement(4452634..4453632) Escherichia coli K12 948753 NP_418654.1 CDS mpl NC_000913.2 4453808 4455181 D GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan metabolic process [goid 0000270]; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4453808..4455181 Escherichia coli K12 948752 NP_418655.1 CDS yjgA NC_000913.2 4455337 4455888 R putative alpha helix protein; GO_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; conserved protein complement(4455337..4455888) Escherichia coli K12 948751 NP_418656.1 CDS pmbA NC_000913.2 4455982 4457334 D maturation of antibiotic MccB17, see tld genes; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 4455982..4457334 Escherichia coli K12 948750 b4236 CDS cybC NC_000913.2 4457513 4457878 D pseudogene, truncated cytochrome b562 cytochrome b(562); GO_function: electron carrier activity [goid 0009055]; GO_process: cytochrome complex assembly [goid 0017004]; 4457513..4457878 Escherichia coli K12 948758 NP_418658.1 CDS nrdG NC_000913.2 4457923 4458387 R GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: protein modification [goid 0006464]; anaerobic ribonucleotide reductase activating protein complement(4457923..4458387) Escherichia coli K12 948757 NP_418659.1 CDS nrdD NC_000913.2 4458545 4460683 R anaerobic ribonucleoside-triphosphate reductase complement(4458545..4460683) Escherichia coli K12 948755 NP_418660.1 CDS treC NC_000913.2 4461077 4462732 R trehalase 6-P hydrolase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; trehalose-6-P hydrolase complement(4461077..4462732) Escherichia coli K12 948762 NP_418661.1 CDS treB NC_000913.2 4462782 4464203 R PTS system enzyme II, trehalose specific; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glucose metabolic process [goid 0006006]; fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component complement(4462782..4464203) Escherichia coli K12 948761 NP_418662.1 CDS treR NC_000913.2 4464322 4465269 R repressor of treA,B,C; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glucose metabolic process [goid 0006006]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; DNA-binding transcriptional repressor complement(4464322..4465269) Escherichia coli K12 948760 NP_418663.1 CDS mgtA NC_000913.2 4465648 4468344 D Mg2+ transport ATPase, P-type 1; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; magnesium transporter 4465648..4468344 Escherichia coli K12 948778 NP_418664.2 CDS yjgF NC_000913.2 4468550 4468936 R ketoacid-binding protein complement(4468550..4468936) Escherichia coli K12 948771 NP_418665.1 CDS pyrI NC_000913.2 4469009 4469470 R GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; aspartate carbamoyltransferase, regulatory subunit complement(4469009..4469470) Escherichia coli K12 948763 NP_418666.1 CDS pyrB NC_000913.2 4469483 4470418 R GO_component: cytoplasm [goid 0005737]; aspartate carbamoyltransferase, catalytic subunit complement(4469483..4470418) Escherichia coli K12 948767 NP_418667.1 CDS pyrL NC_000913.2 4470422 4470556 R GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; pyrBI operon leader peptide complement(4470422..4470556) Escherichia coli K12 948768 NP_418669.1 CDS yjgH NC_000913.2 4470837 4471232 R GO_process: translation [goid 0006412]; predicted mRNA endoribonuclease complement(4470837..4471232) Escherichia coli K12 948769 NP_418670.1 CDS yjgI NC_000913.2 4471363 4472076 R putative oxidoreductase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain complement(4471363..4472076) Escherichia coli K12 948765 NP_418672.4 CDS yjgJ NC_000913.2 4472147 4472740 D predicted transcriptional regulator 4472147..4472740 Escherichia coli K12 948775 NP_418673.4 CDS yjgK NC_000913.2 4472885 4473337 D conserved protein 4472885..4473337 Escherichia coli K12 948777 NP_418674.2 CDS yjgL NC_000913.2 4473460 4475274 D predicted protein 4473460..4475274 Escherichia coli K12 948776 NP_418675.1 CDS argI NC_000913.2 4475330 4476334 R GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; ornithine carbamoyltransferase 1 complement(4475330..4476334) Escherichia coli K12 948774 NP_418676.1 CDS rraB NC_000913.2 4476496 4476912 D conserved protein 4476496..4476912 Escherichia coli K12 948773 YP_026287.1 CDS yjgM NC_000913.2 4477057 4477560 R putative acyltransferase; predicted acetyltransferase complement(4477057..4477560) Escherichia coli K12 948772 YP_026288.1 CDS yjgN NC_000913.2 4477753 4478949 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4477753..4478949 Escherichia coli K12 948784 NP_418679.1 CDS valS NC_000913.2 4479005 4481860 R valine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; valyl-tRNA synthetase complement(4479005..4481860) Escherichia coli K12 948785 NP_418680.1 CDS holC NC_000913.2 4481860 4482303 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, chi subunit complement(4481860..4482303) Escherichia coli K12 948787 NP_418681.1 CDS pepA NC_000913.2 4482463 4483974 R aminopeptidase A/I; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; GO_process: transcription [goid 0006350]; aminopeptidase A, a cyteinylglycinase complement(4482463..4483974) Escherichia coli K12 948791 NP_418682.1 CDS yjgP NC_000913.2 4484241 4485341 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4484241..4485341 Escherichia coli K12 948795 NP_418683.4 CDS yjgQ NC_000913.2 4485341 4486423 D GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4485341..4486423 Escherichia coli K12 945324 NP_418684.1 CDS yjgR NC_000913.2 4486584 4488086 R predicted ATPase complement(4486584..4488086) Escherichia coli K12 948978 NP_418685.1 CDS idnR NC_000913.2 4488164 4489162 R GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, 5-gluconate-binding complement(4488164..4489162) Escherichia coli K12 949058 NP_418686.1 CDS idnT NC_000913.2 4489229 4490548 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; L-idonate and D-gluconate transporter complement(4489229..4490548) Escherichia coli K12 948798 NP_418687.1 CDS idnO NC_000913.2 4490610 4491374 R GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 5-keto-D-gluconate-5-reductase complement(4490610..4491374) Escherichia coli K12 947109 NP_418688.1 CDS idnD NC_000913.2 4491398 4492429 R GO_process: carbohydrate catabolic process [goid 0016052]; L-idonate 5-dehydrogenase, NAD-binding complement(4491398..4492429) Escherichia coli K12 944769 NP_418689.1 CDS idnK NC_000913.2 4492646 4493209 D GO_process: carbohydrate catabolic process [goid 0016052]; D-gluconate kinase, thermosensitive 4492646..4493209 Escherichia coli K12 946066 NP_418690.4 CDS yjgB NC_000913.2 4493213 4494232 R putative oxidoreductase; predicted alcohol dehydrogenase, Zn-dependent and NAD(P)-binding complement(4493213..4494232) Escherichia coli K12 948802 b4271 CDS intB NC_000913.2 4494698 4495963 D KpLE2 phage-like element; predicted integrase;IS, phage, Tn; Phage-related functions and prophages KpLE2 phage-like element; P4-like integrase; 4494698..4495963 Escherichia coli K12 948782 NP_418692.2 CDS insC NC_000913.2 4496295 4496660 D KpLE2 phage-like element; IS2 insertion element repressor InsA 4496295..4496660 Escherichia coli K12 948781 NP_418693.1 CDS insD NC_000913.2 4496618 4497523 D KpLE2 phage-like element; IS2 insertion element transposase InsAB' 4496618..4497523 Escherichia coli K12 948779 b4575 CDS yjgX NC_000913.2 4497616 4498814 R KpLE2 phage-like element; predicted protein, C-ter fragment (pseudogene); GO_component: peptidoglycan-based cell wall [goid 0009274]; complement(join(4497616..4498557,4498557..4498814)) Escherichia coli K12 4056033 NP_418697.1 CDS yjgZ NC_000913.2 4499283 4499612 D KpLE2 phage-like element; predicted protein 4499283..4499612 Escherichia coli K12 948804 NP_418698.1 CDS insG NC_000913.2 4500126 4501454 R KpLE2 phage-like element; IS4 predicted transposase complement(4500126..4501454) Escherichia coli K12 948805 NP_418699.4 CDS yjhB NC_000913.2 4502081 4503298 D putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; KpLE2 phage-like element; predicted transporter 4502081..4503298 Escherichia coli K12 948807 NP_418700.2 CDS yjhC NC_000913.2 4503310 4504428 D putative dehydrogenase; KpLE2 phage-like element; predicted oxidoreductase 4503310..4504428 Escherichia coli K12 948808 YP_001491548.1 CDS ythA NC_000913.2 4504471 4504596 D expressed protein 4504471..4504596 Escherichia coli K12 5625581 b4281 CDS yjhD NC_000913.2 4504649 4504879 R pseudogene, KpLE2 phage-like element; complement(4504649..4504879) Escherichia coli K12 948809 b4282 CDS yjhE NC_000913.2 4504884 4505132 D pseudogene, KpLE2 phage-like element; predicted membrane protein; 4504884..4505132 Escherichia coli K12 948810 b4623 CDS insO NC_000913.2 4505220 4507816 D pseudogene, IS911 transposase ORFAB; join(4505220..4505474,4507032..4507816) Escherichia coli K12 5061531 NP_418704.1 CDS insI NC_000913.2 4505489 4506640 R KpLE2 phage-like element; IS30 transposase complement(4505489..4506640) Escherichia coli K12 948815 b4561 CDS insM NC_000913.2 4506699 4506965 R AELESEILQLRKALNEARLERDILKKATV;KpLE2 phage-like element; predicted transposase fragment (pseudogene); complement(4506699..4506965) Escherichia coli K12 1450310 b4286 CDS yjhV NC_000913.2 4507827 4508156 D pseudogene, KpLE2 phage-like element; 4507827..4508156 Escherichia coli K12 948818 NP_418707.1 CDS fecE NC_000913.2 4508713 4509480 R ATP-binding component of citrate-dependent iron(III) transport protein; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; iron-dicitrate transporter subunit complement(4508713..4509480) Escherichia coli K12 948819 NP_418708.1 CDS fecD NC_000913.2 4509481 4510437 R citrate-dependent iron transport, membrane-bound protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; KpLE2 phage-like element; iron-dicitrate transporter subunit complement(4509481..4510437) Escherichia coli K12 946816 NP_418709.1 CDS fecC NC_000913.2 4510434 4511432 R citrate-dependent iron(III) transport protein, cytosolic; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; iron-dicitrate transporter subunit complement(4510434..4511432) Escherichia coli K12 948826 NP_418710.4 CDS fecB NC_000913.2 4511429 4512331 R citrate-dependent iron transport, periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; iron-dicitrate transporter subunit complement(4511429..4512331) Escherichia coli K12 946838 NP_418711.1 CDS fecA NC_000913.2 4512376 4514700 R outer membrane receptor; citrate-dependent iron transport, outer membrane receptor; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; ferric citrate outer membrane transporter complement(4512376..4514700) Escherichia coli K12 946427 NP_418712.1 CDS fecR NC_000913.2 4514787 4515740 R regulator for fec operon, periplasmic; GO_component: organelle inner membrane [goid 0019866]; GO_process: transcription [goid 0006350]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport complement(4514787..4515740) Escherichia coli K12 949104 NP_418713.1 CDS fecI NC_000913.2 4515737 4516258 R probable RNA polymerase sigma factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; KpLE2 phage-like element; RNA polymerase, sigma 19 factor complement(4515737..4516258) Escherichia coli K12 946839 NP_418714.1 CDS insA NC_000913.2 4516550 4516825 D KpLE2 phage-like element; IS1 repressor protein InsA 4516550..4516825 Escherichia coli K12 948830 b4576 CDS insB NC_000913.2 4516744 4517247 D IS1 transposase InsAB';IS, phage, Tn; Transposon-related functions;8.3 extrachromosomal; transposon related; 4516744..4517247 Escherichia coli K12 4056034 NP_418715.2 CDS yjhU NC_000913.2 4517361 4518347 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; KpLE2 phage-like element; predicted DNA-binding transcriptional regulator complement(4517361..4518347) Escherichia coli K12 948827 NP_418716.1 CDS yjhF NC_000913.2 4518694 4520043 R putative transport system permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; KpLE2 phage-like element; predicted transporter complement(4518694..4520043) Escherichia coli K12 949102 NP_418717.1 CDS yjhG NC_000913.2 4520150 4522117 R putative dehydratase; KpLE2 phage-like element; predicted dehydratase complement(4520150..4522117) Escherichia coli K12 946829 NP_418718.4 CDS yjhH NC_000913.2 4522128 4523033 R putative lyase/synthase; KpLE2 phage-like element; predicted lyase/synthase complement(4522128..4523033) Escherichia coli K12 948825 NP_418719.1 CDS yjhI NC_000913.2 4523038 4523826 R putative regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; KpLE2 phage-like element; predicted DNA-binding transcriptional regulator complement(4523038..4523826) Escherichia coli K12 949100 NP_418720.1 CDS sgcR NC_000913.2 4524129 4524911 R putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; KpLE2 phage-like element; predicted DNA-binding transcriptional regulator complement(4524129..4524911) Escherichia coli K12 946830 NP_418721.1 CDS sgcE NC_000913.2 4524928 4525560 R putative epimerase; KpLE2 phage-like element; predicted epimerase complement(4524928..4525560) Escherichia coli K12 948829 NP_418722.1 CDS sgcA NC_000913.2 4525572 4526003 R putative PTS system enzyme II A component; KpLE2 phage-like element; predicted phosphotransferase enzyme IIA component complement(4525572..4526003) Escherichia coli K12 948831 NP_418723.1 CDS sgcQ NC_000913.2 4526134 4526940 R putative nucleoside triphosphatase; KpLE2 phage-like element; predicted nucleoside triphosphatase complement(4526134..4526940) Escherichia coli K12 948834 NP_418724.1 CDS sgcC NC_000913.2 4526953 4528266 R putative PTS system enzyme IIC component; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; KpLE2 phage-like element; predicted phosphotransferase enzyme IIC component complement(4526953..4528266) Escherichia coli K12 946849 YP_588476.1 CDS sgcB NC_000913.2 4528278 4528556 R GO_component: cytoplasm [goid 0005737]; predicted enzyme IIB component of PTS complement(4528278..4528556) Escherichia coli K12 1450295 NP_418725.4 CDS sgcX NC_000913.2 4528553 4529674 R putative lyase/synthase; KpLE2 phage-like element; predicted endoglucanase with Zn-dependent exopeptidase domain complement(4528553..4529674) Escherichia coli K12 948840 b4656 CDS yjhY NC_000913.2 4530073 4530333 R pseudogene, novel zinc finger family; complement(4530073..4530333) Escherichia coli K12 5625582 NP_418726.1 CDS yjhP NC_000913.2 4530460 4531206 R putative methyltransferase; KpLE2 phage-like element; predicted methyltransferase complement(4530460..4531206) Escherichia coli K12 946851 NP_418727.1 CDS yjhQ NC_000913.2 4531262 4531807 R GO_process: RNA metabolic process [goid 0016070]; KpLE2 phage-like element; predicted acetyltransferase complement(4531262..4531807) Escherichia coli K12 949059 YP_588477.1 CDS yjhX NC_000913.2 4531819 4532076 R conserved protein complement(4531819..4532076) Escherichia coli K12 1450297 b4657 CDS yjhZ NC_000913.2 4532453 4532698 R pseudogene, rimK paralog, C-terminal fragment; complement(4532453..4532698) Escherichia coli K12 5625583 b4308 CDS yjhR NC_000913.2 4532814 4534054 D pseudogene, KpLE2 phage-like element; predicted frameshift suppressor putative frameshift suppressor; join(4532814..4533026,4533026..4534054) Escherichia coli K12 944740 NP_418729.1 CDS yjhS NC_000913.2 4534637 4535617 R conserved protein complement(4534637..4535617) Escherichia coli K12 948835 NP_418730.4 CDS yjhT NC_000913.2 4535682 4536788 R conserved protein complement(4535682..4536788) Escherichia coli K12 949106 NP_418731.2 CDS nanC NC_000913.2 4536808 4537524 R N-acetylnuraminic acid outer membrane channel protein complement(4536808..4537524) Escherichia coli K12 946843 NP_418732.1 CDS fimB NC_000913.2 4538980 4539582 D recombinase involved in phase variation; regulator for fimA; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_process: pilus biogenesis [goid 0009297]; GO_process: DNA recombination [goid 0006310]; tyrosine recombinase/inversion of on/off regulator of fimA 4538980..4539582 Escherichia coli K12 948832 NP_418733.1 CDS fimE NC_000913.2 4540060 4540656 D recombinase involved in phase variation; regulator for fimA; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_process: pilus biogenesis [goid 0009297]; GO_process: DNA recombination [goid 0006310]; tyrosine recombinase/inversion of on/off regulator of fimA 4540060..4540656 Escherichia coli K12 948836 NP_418734.1 CDS fimA NC_000913.2 4541138 4541686 D GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; major type 1 subunit fimbrin (pilin) 4541138..4541686 Escherichia coli K12 948838 NP_418735.2 CDS fimI NC_000913.2 4541751 4542290 D fimbrial protein; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; fimbrial protein involved in type 1 pilus biosynthesis 4541751..4542290 Escherichia coli K12 948841 NP_418736.3 CDS fimC NC_000913.2 4542327 4543052 D periplasmic chaperone, required for type 1 fimbriae; GO_component: fimbrium [goid 0009289]; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; chaperone, periplasmic 4542327..4543052 Escherichia coli K12 948843 NP_418737.1 CDS fimD NC_000913.2 4543119 4545755 D outer membrane protein; export and assembly of type 1 fimbriae, interrupted; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane usher protein, type 1 fimbrial synthesis 4543119..4545755 Escherichia coli K12 948844 NP_418738.1 CDS fimF NC_000913.2 4545765 4546295 D fimbrial morphology; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; minor component of type 1 fimbriae 4545765..4546295 Escherichia coli K12 948845 NP_418739.1 CDS fimG NC_000913.2 4546308 4546811 D fimbrial morphology; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; minor component of type 1 fimbriae 4546308..4546811 Escherichia coli K12 948846 NP_418740.1 CDS fimH NC_000913.2 4546831 4547733 D minor fimbrial subunit, D-mannose specific adhesin; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; minor component of type 1 fimbriae 4546831..4547733 Escherichia coli K12 948847 NP_418741.1 CDS gntP NC_000913.2 4547976 4549319 R gluconate transport system permease 3; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fructuronate transporter complement(4547976..4549319) Escherichia coli K12 948848 NP_418742.1 CDS uxuA NC_000913.2 4549659 4550843 D GO_process: carbohydrate catabolic process [goid 0016052]; mannonate hydrolase 4549659..4550843 Escherichia coli K12 947082 NP_418743.1 CDS uxuB NC_000913.2 4550924 4552384 D D-mannonate oxidoreductase; GO_process: carbohydrate catabolic process [goid 0016052]; D-mannonate oxidoreductase, NAD-binding 4550924..4552384 Escherichia coli K12 946795 NP_418744.1 CDS uxuR NC_000913.2 4552599 4553372 D regulator for uxu operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 4552599..4553372 Escherichia coli K12 948849 NP_418745.3 CDS yjiC NC_000913.2 4553513 4554343 R predicted protein complement(4553513..4554343) Escherichia coli K12 948850 NP_418746.4 CDS yjiD NC_000913.2 4555016 4555408 D DNA replication/recombination/repair protein 4555016..4555408 Escherichia coli K12 948851 NP_418747.1 CDS yjiE NC_000913.2 4555401 4556312 R putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator complement(4555401..4556312) Escherichia coli K12 948852 NP_418748.1 CDS iadA NC_000913.2 4556377 4557549 R isoaspartyl dipeptidase complement(4556377..4557549) Escherichia coli K12 948853 NP_418749.1 CDS yjiG NC_000913.2 4557562 4558023 R conserved inner membrane protein complement(4557562..4558023) Escherichia coli K12 948854 NP_418750.2 CDS yjiH NC_000913.2 4558020 4558703 R conserved inner membrane protein complement(4558020..4558703) Escherichia coli K12 948856 NP_418751.4 CDS kptA NC_000913.2 4558953 4559507 D GO_component: cytoplasm [goid 0005737]; 2'-phosphotransferase 4558953..4559507 Escherichia coli K12 948858 NP_418752.1 CDS yjiJ NC_000913.2 4559520 4560698 R putative transport protein; predicted inner membrane protein complement(4559520..4560698) Escherichia coli K12 948859 NP_418753.3 CDS yjiK NC_000913.2 4560766 4561626 R GO_component: cell outer membrane [goid 0009279]; conserved protein complement(4560766..4561626) Escherichia coli K12 948957 NP_418754.2 CDS yjiL NC_000913.2 4561945 4562712 R putative enzyme; predicted ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase complement(4561945..4562712) Escherichia coli K12 948837 NP_418755.4 CDS yjiM NC_000913.2 4562722 4563873 R predicted 2-hydroxyglutaryl-CoA dehydratase complement(4562722..4563873) Escherichia coli K12 945789 NP_418756.1 CDS yjiN NC_000913.2 4563989 4565269 R GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein complement(4563989..4565269) Escherichia coli K12 948860 NP_418757.1 CDS mdtM NC_000913.2 4565310 4566542 R putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein complement(4565310..4566542) Escherichia coli K12 948861 b4339 CDS yjiP NC_000913.2 4567021 4567941 D predicted transposase; 4567021..4567941 Escherichia coli K12 948866 NP_418760.1 CDS yjiR NC_000913.2 4568185 4569597 R putative regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; fused predicted DNA-binding transcriptional regulator/predicted aminotransferase complement(4568185..4569597) Escherichia coli K12 949089 NP_418761.1 CDS yjiS NC_000913.2 4569774 4569938 D conserved protein 4569774..4569938 Escherichia coli K12 948903 b4342 CDS yjiT NC_000913.2 4570437 4571939 D conserved protein; 4570437..4571939 Escherichia coli K12 945056 b4486 CDS yjiV NC_000913.2 4571942 4574878 D pseudogene conserved hypothetical protein; 4571942..4574878 Escherichia coli K12 2847669 NP_418765.1 CDS mcrC NC_000913.2 4574935 4575981 R component of McrBC 5-methylcytosine restriction system, expands range of sequences restricted; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC complement(4574935..4575981) Escherichia coli K12 948880 NP_418766.4 CDS mcrB NC_000913.2 4575981 4577360 R component of McrBC 5-methylcytosine restriction system; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB complement(4575981..4577360) Escherichia coli K12 949122 NP_418767.4 CDS yjiW NC_000913.2 4577522 4577863 R GO_process: SOS response [goid 0009432]; conserved protein complement(4577522..4577863) Escherichia coli K12 949088 NP_418768.1 CDS hsdS NC_000913.2 4578091 4579485 R GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; specificity determinant for hsdM and hsdR complement(4578091..4579485) Escherichia coli K12 948867 NP_418769.1 CDS hsdM NC_000913.2 4579482 4581071 R host modification; DNA methylase M; GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; DNA methylase M complement(4579482..4581071) Escherichia coli K12 948872 NP_418770.1 CDS hsdR NC_000913.2 4581272 4584838 R host restriction; endonuclease R; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; endonuclease R complement(4581272..4584838) Escherichia coli K12 948878 NP_418771.1 CDS mrr NC_000913.2 4584972 4585886 D restriction of methylated adenine; GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; methylated adenine and cytosine restriction protein 4584972..4585886 Escherichia coli K12 948898 NP_418772.4 CDS yjiA NC_000913.2 4585932 4586888 R predicted GTPase complement(4585932..4586888) Escherichia coli K12 948882 NP_418773.1 CDS yjiX NC_000913.2 4586899 4587102 R conserved protein complement(4586899..4587102) Escherichia coli K12 949090 NP_418774.2 CDS yjiY NC_000913.2 4587152 4589302 R putative carbon starvation protein; GO_process: response to starvation [goid 0042594]; predicted inner membrane protein complement(4587152..4589302) Escherichia coli K12 948914 NP_418775.1 CDS tsr NC_000913.2 4589680 4591335 D GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting chemotaxis protein I, serine sensor receptor 4589680..4591335 Escherichia coli K12 948884 NP_418776.1 CDS yjjL NC_000913.2 4591384 4592745 R putative transport protein, cryptic, orf, joins former yjiZ and yjjL; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter complement(4591384..4592745) Escherichia coli K12 948879 YP_026290.1 CDS yjjM NC_000913.2 4592960 4593874 R GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator complement(4592960..4593874) Escherichia coli K12 948881 NP_418778.3 CDS yjjN NC_000913.2 4594022 4595035 D putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 4594022..4595035 Escherichia coli K12 948883 NP_418779.2 CDS mdoB NC_000913.2 4595173 4597464 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; GO_process: glucan biosynthetic process [goid 0009250]; GO_process: response to osmotic stress [goid 0006970]; phosphoglycerol transferase I complement(4595173..4597464) Escherichia coli K12 948888 NP_418780.2 CDS yjjA NC_000913.2 4597718 4598212 R putative glycoprotein/receptor; conserved protein complement(4597718..4598212) Escherichia coli K12 948887 NP_418781.1 CDS dnaC NC_000913.2 4598261 4598998 R chromosome replication; initiation and chain elongation; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA biosynthesis protein complement(4598261..4598998) Escherichia coli K12 948864 NP_418782.1 CDS dnaT NC_000913.2 4599001 4599540 R DNA biosynthesis; primosomal protein i; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA biosynthesis protein (primosomal protein I) complement(4599001..4599540) Escherichia coli K12 948813 NP_418783.2 CDS yjjB NC_000913.2 4599647 4600120 R conserved inner membrane protein complement(4599647..4600120) Escherichia coli K12 948811 NP_418784.4 CDS yjjP NC_000913.2 4600111 4600881 R putative structural protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein complement(4600111..4600881) Escherichia coli K12 948812 NP_418785.1 CDS yjjQ NC_000913.2 4601500 4602225 D putative regulator; predicted DNA-binding transcriptional regulator 4601500..4602225 Escherichia coli K12 948896 NP_418786.3 CDS bglJ NC_000913.2 4602333 4602860 D 2-component transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 4602333..4602860 Escherichia coli K12 948889 NP_418787.1 CDS fhuF NC_000913.2 4602898 4603686 R GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; ferric iron reductase involved in ferric hydroximate transport complement(4602898..4603686) Escherichia coli K12 948891 YP_588478.1 CDS yjjZ NC_000913.2 4603827 4604063 D GO_component: integral to membrane [goid 0016021]; predicted protein 4603827..4604063 Escherichia coli K12 1450313 NP_418788.1 CDS rsmC NC_000913.2 4604692 4605723 R GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 16S rRNA m2G1207 methylase complement(4604692..4605723) Escherichia coli K12 948892 NP_418789.1 CDS holD NC_000913.2 4605826 4606239 D GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, psi subunit 4605826..4606239 Escherichia coli K12 948890 NP_418790.1 CDS rimI NC_000913.2 4606208 4606654 D acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; acetylase for 30S ribosomal subunit protein S18 4606208..4606654 Escherichia coli K12 948894 NP_418791.1 CDS yjjG NC_000913.2 4606669 4607346 D putative phosphatase; dUMP phosphatase 4606669..4607346 Escherichia coli K12 948899 NP_418792.1 CDS prfC NC_000913.2 4607437 4609026 D GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; peptide chain release factor RF-3 4607437..4609026 Escherichia coli K12 948897 NP_418793.1 CDS osmY NC_000913.2 4609419 4610024 D hyperosmotically inducible periplasmic protein; GO_component: periplasmic space [goid 0042597]; GO_process: response to osmotic stress [goid 0006970]; periplasmic protein 4609419..4610024 Escherichia coli K12 948895 YP_588479.2 CDS ytjA NC_000913.2 4610151 4610312 D GO_component: integral to membrane [goid 0016021]; predicted protein 4610151..4610312 Escherichia coli K12 1450298 NP_418794.1 CDS yjjU NC_000913.2 4610434 4611507 D GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted esterase 4610434..4611507 Escherichia coli K12 948906 YP_026291.2 CDS yjjV NC_000913.2 4611504 4612283 D predicted DNase 4611504..4612283 Escherichia coli K12 2847741 NP_418796.1 CDS yjjW NC_000913.2 4612703 4613566 R putative activating enzyme; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; predicted pyruvate formate lyase activating enzyme complement(4612703..4613566) Escherichia coli K12 948905 NP_418797.1 CDS yjjI NC_000913.2 4613538 4615088 R conserved protein complement(4613538..4615088) Escherichia coli K12 948904 NP_418798.1 CDS deoC NC_000913.2 4615346 4616125 D 2-deoxyribose-5-phosphate aldolase; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked 4615346..4616125 Escherichia coli K12 948902 NP_418799.1 CDS deoA NC_000913.2 4616252 4617574 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidine phosphorylase 4616252..4617574 Escherichia coli K12 948901 NP_418800.1 CDS deoB NC_000913.2 4617626 4618849 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; phosphopentomutase 4617626..4618849 Escherichia coli K12 948910 NP_418801.1 CDS deoD NC_000913.2 4618906 4619625 D GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; purine-nucleoside phosphorylase 4618906..4619625 Escherichia coli K12 945654 NP_418802.1 CDS yjjJ NC_000913.2 4619792 4621123 D predicted DNA-binding transcriptional regulator 4619792..4621123 Escherichia coli K12 944883 NP_418803.1 CDS lplA NC_000913.2 4621124 4622140 R GO_component: cytoplasm [goid 0005737]; GO_process: lipoprotein biosynthetic process [goid 0042158]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; lipoate-protein ligase A complement(4621124..4622140) Escherichia coli K12 944865 NP_418804.1 CDS ytjB NC_000913.2 4622168 4622812 R GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; conserved protein complement(4622168..4622812) Escherichia coli K12 946089 NP_418805.1 CDS serB NC_000913.2 4622918 4623886 D GO_component: cytoplasm [goid 0005737]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: L-serine biosynthetic process [goid 0006564]; 3-phosphoserine phosphatase 4622918..4623886 Escherichia coli K12 948913 NP_418806.1 CDS radA NC_000913.2 4623935 4625317 D probable ATP-dependent protease; predicted repair protein 4623935..4625317 Escherichia coli K12 948912 NP_418807.4 CDS nadR NC_000913.2 4625338 4626570 D probable nadAB transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: NAD biosynthetic process [goid 0009435]; GO_process: transcription [goid 0006350]; bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase 4625338..4626570 Escherichia coli K12 948911 NP_418808.1 CDS yjjK NC_000913.2 4626878 4628545 R putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components complement(4626878..4628545) Escherichia coli K12 948909 NP_418809.4 CDS slt NC_000913.2 4628756 4630693 D soluble lytic murein transglycosylase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; lytic murein transglycosylase, soluble 4628756..4630693 Escherichia coli K12 948908 NP_418810.1 CDS trpR NC_000913.2 4630783 4631109 D regulator for trp operon and aroH; trp aporepressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: tryptophan biosynthetic process [goid 0000162]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, tryptophan-binding 4630783..4631109 Escherichia coli K12 948917 NP_418811.2 CDS yjjX NC_000913.2 4631256 4631768 R thiamin metabolism associated protein complement(4631256..4631768) Escherichia coli K12 948919 NP_418812.1 CDS ytjC NC_000913.2 4631820 4632467 D phosphoglyceromutase 2; GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; phosphoglyceromutase 2, co-factor independent 4631820..4632467 Escherichia coli K12 948918 NP_418813.1 CDS rob NC_000913.2 4632464 4633333 R right origin-binding protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator complement(4632464..4633333) Escherichia coli K12 948916 NP_418814.1 CDS creA NC_000913.2 4633544 4634017 D conserved protein 4633544..4634017 Escherichia coli K12 948920 NP_418815.1 CDS creB NC_000913.2 4634030 4634719 D catabolic regulation response regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with CreC 4634030..4634719 Escherichia coli K12 948922 NP_418816.1 CDS creC NC_000913.2 4634719 4636143 D catabolite repression sensor kinase for PhoB; alternative sensor for pho regulon; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon 4634719..4636143 Escherichia coli K12 948609 NP_418817.1 CDS creD NC_000913.2 4636201 4637553 D tolerance to colicin E2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; inner membrane protein 4636201..4637553 Escherichia coli K12 948868 NP_418818.1 CDS arcA NC_000913.2 4637613 4638329 R negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA complement(4637613..4638329) Escherichia coli K12 948874 NP_418819.1 CDS yjjY NC_000913.2 4638425 4638565 D predicted protein 4638425..4638565 Escherichia coli K12 948925 NP_418820.1 CDS yjtD NC_000913.2 4638965 4639651 D GO_process: RNA modification [goid 0009451]; predicted rRNA methyltransferase 4638965..4639651 Escherichia coli K12 948924 b0202 tRNA ileV NC_000913.2 225381 225457 D tRNA-Ile 225381..225457 Escherichia coli K12 944884 b0203 tRNA alaV NC_000913.2 225500 225575 D tRNA-Ala 225500..225575 Escherichia coli K12 944890 b0206 tRNA aspU NC_000913.2 228928 229004 D tRNA-Asp 228928..229004 Escherichia coli K12 944880 b0216 tRNA aspV NC_000913.2 236931 237007 D tRNA-Asp 236931..237007 Escherichia coli K12 947541 b0244 tRNA thrW NC_000913.2 262095 262170 D tRNA-Thr 262095..262170 Escherichia coli K12 947202 b4629 tRNA ptwF NC_000913.2 296430 296478 D tRNA-OTHER 296430..296478 Escherichia coli K12 5625555 b0536 tRNA argU NC_000913.2 563946 564022 D tRNA-Arg 563946..564022 Escherichia coli K12 945161 b4635 tRNA pauD NC_000913.2 585280 585324 D tRNA-OTHER 585280..585324 Escherichia coli K12 5625561 b0664 tRNA glnX NC_000913.2 695653 695727 R tRNA-Gln complement(695653..695727) Escherichia coli K12 945257 b0665 tRNA glnV NC_000913.2 695765 695839 R tRNA-Gln complement(695765..695839) Escherichia coli K12 945255 b0666 tRNA metU NC_000913.2 695887 695963 R tRNA-Met complement(695887..695963) Escherichia coli K12 945262 b0668 tRNA glnW NC_000913.2 695979 696053 R tRNA-Gln complement(695979..696053) Escherichia coli K12 945750 b0670 tRNA glnU NC_000913.2 696088 696162 R tRNA-Gln complement(696088..696162) Escherichia coli K12 945269 b0672 tRNA leuW NC_000913.2 696186 696270 R tRNA-Leu complement(696186..696270) Escherichia coli K12 945264 b0673 tRNA metT NC_000913.2 696280 696356 R tRNA-Met complement(696280..696356) Escherichia coli K12 945280 b0743 tRNA lysT NC_000913.2 779777 779852 D tRNA-Lys 779777..779852 Escherichia coli K12 945336 b0744 tRNA valT NC_000913.2 779988 780063 D tRNA-Val 779988..780063 Escherichia coli K12 945331 b0745 tRNA lysW NC_000913.2 780066 780141 D tRNA-Lys 780066..780141 Escherichia coli K12 945338 b0746 tRNA valZ NC_000913.2 780291 780366 D tRNA-Val 780291..780366 Escherichia coli K12 945345 b0747 tRNA lysY NC_000913.2 780370 780445 D tRNA-Lys 780370..780445 Escherichia coli K12 945342 b0748 tRNA lysZ NC_000913.2 780592 780667 D tRNA-Lys 780592..780667 Escherichia coli K12 945352 b0749 tRNA lysQ NC_000913.2 780800 780875 D tRNA-Lys 780800..780875 Escherichia coli K12 945353 b0883 tRNA serW NC_000913.2 925107 925194 R tRNA-Ser complement(925107..925194) Escherichia coli K12 945501 b0971 tRNA serT NC_000913.2 1030848 1030935 R tRNA-Ser complement(1030848..1030935) Escherichia coli K12 944826 b1032 tRNA serX NC_000913.2 1096788 1096875 R tRNA-Ser complement(1096788..1096875) Escherichia coli K12 945714 b1230 tRNA tyrV NC_000913.2 1286467 1286551 R tRNA-Tyr complement(1286467..1286551) Escherichia coli K12 945811 b1231 tRNA tyrT NC_000913.2 1286761 1286845 R tRNA-Tyr complement(1286761..1286845) Escherichia coli K12 945820 b1665 tRNA valV NC_000913.2 1744459 1744535 D tRNA-Val 1744459..1744535 Escherichia coli K12 946170 b1666 tRNA valW NC_000913.2 1744540 1744616 D tRNA-Val 1744540..1744616 Escherichia coli K12 949069 b1909 tRNA leuZ NC_000913.2 1989839 1989925 R tRNA-Leu complement(1989839..1989925) Escherichia coli K12 945662 b1910 tRNA cysT NC_000913.2 1989938 1990011 R tRNA-Cys complement(1989938..1990011) Escherichia coli K12 946414 b1911 tRNA glyW NC_000913.2 1990066 1990141 R tRNA-Gly complement(1990066..1990141) Escherichia coli K12 946416 b1975 tRNA serU NC_000913.2 2041492 2041581 R tRNA-Ser complement(2041492..2041581) Escherichia coli K12 946492 b1977 tRNA asnT NC_000913.2 2042573 2042648 D tRNA-Asn 2042573..2042648 Escherichia coli K12 946488 b1984 tRNA asnW NC_000913.2 2056051 2056126 R tRNA-Asn complement(2056051..2056126) Escherichia coli K12 946494 b1986 tRNA asnU NC_000913.2 2057875 2057950 D tRNA-Asn 2057875..2057950 Escherichia coli K12 946503 b1989 tRNA asnV NC_000913.2 2060284 2060359 D tRNA-Asn 2060284..2060359 Escherichia coli K12 946509 b2189 tRNA proL NC_000913.2 2284233 2284309 D tRNA-Pro 2284233..2284309 Escherichia coli K12 946320 b2348 tRNA argW NC_000913.2 2464331 2464405 D tRNA-Arg 2464331..2464405 Escherichia coli K12 945486 b4643 tRNA pawZ NC_000913.2 2474606 2474620 D tRNA-OTHER 2474606..2474620 Escherichia coli K12 5625569 b2396 tRNA alaX NC_000913.2 2516063 2516138 R tRNA-Ala complement(2516063..2516138) Escherichia coli K12 946859 b2397 tRNA alaW NC_000913.2 2516178 2516253 R tRNA-Ala complement(2516178..2516253) Escherichia coli K12 946860 b2401 tRNA valU NC_000913.2 2518953 2519028 D tRNA-Val 2518953..2519028 Escherichia coli K12 946824 b2402 tRNA valX NC_000913.2 2519073 2519148 D tRNA-Val 2519073..2519148 Escherichia coli K12 946817 b2403 tRNA valY NC_000913.2 2519195 2519270 D tRNA-Val 2519195..2519270 Escherichia coli K12 946870 b2404 tRNA lysV NC_000913.2 2519275 2519350 D tRNA-Lys 2519275..2519350 Escherichia coli K12 946866 b2590 tRNA gltW NC_000913.2 2727391 2727466 R tRNA-Glu complement(2727391..2727466) Escherichia coli K12 947076 b2652 tRNA ileY NC_000913.2 2783784 2783859 R tRNA-Ile complement(2783784..2783859) Escherichia coli K12 947163 b2691 tRNA argQ NC_000913.2 2815806 2815882 R tRNA-Arg complement(2815806..2815882) Escherichia coli K12 947150 b2692 tRNA argZ NC_000913.2 2816081 2816157 R tRNA-Arg complement(2816081..2816157) Escherichia coli K12 947171 b2693 tRNA argY NC_000913.2 2816220 2816296 R tRNA-Arg complement(2816220..2816296) Escherichia coli K12 946596 b2694 tRNA argV NC_000913.2 2816495 2816571 R tRNA-Arg complement(2816495..2816571) Escherichia coli K12 947209 b2695 tRNA serV NC_000913.2 2816575 2816667 R tRNA-Ser complement(2816575..2816667) Escherichia coli K12 947173 b2814 tRNA metZ NC_000913.2 2945409 2945485 D tRNA-Met 2945409..2945485 Escherichia coli K12 947198 b2815 tRNA metW NC_000913.2 2945519 2945595 D tRNA-Met 2945519..2945595 Escherichia coli K12 947292 b2816 tRNA metV NC_000913.2 2945629 2945705 D tRNA-Met 2945629..2945705 Escherichia coli K12 946037 b2864 tRNA glyU NC_000913.2 2997006 2997079 R tRNA-Gly complement(2997006..2997079) Escherichia coli K12 947343 b2967 tRNA pheV NC_000913.2 3108388 3108463 D tRNA-Phe 3108388..3108463 Escherichia coli K12 947463 b3069 tRNA ileX NC_000913.2 3213620 3213695 D tRNA-Ile 3213620..3213695 Escherichia coli K12 947558 b3171 tRNA metY NC_000913.2 3316235 3316311 R tRNA-Met complement(3316235..3316311) Escherichia coli K12 947678 b3174 tRNA leuU NC_000913.2 3320094 3320180 R tRNA-Leu complement(3320094..3320180) Escherichia coli K12 947505 b3273 tRNA thrV NC_000913.2 3421602 3421677 R tRNA-Thr complement(3421602..3421677) Escherichia coli K12 947770 b3276 tRNA alaU NC_000913.2 3424980 3425055 R tRNA-Ala complement(3424980..3425055) Escherichia coli K12 947772 b3277 tRNA ileU NC_000913.2 3425098 3425174 R tRNA-Ile complement(3425098..3425174) Escherichia coli K12 947778 b3545 tRNA proK NC_000913.2 3706639 3706715 R tRNA-Pro complement(3706639..3706715) Escherichia coli K12 948061 b3757 tRNA gltU NC_000913.2 3941458 3941533 D tRNA-Glu 3941458..3941533 Escherichia coli K12 948271 b3760 tRNA aspT NC_000913.2 3944895 3944971 D tRNA-Asp 3944895..3944971 Escherichia coli K12 948276 b3761 tRNA trpT NC_000913.2 3944980 3945055 D tRNA-Trp 3944980..3945055 Escherichia coli K12 948275 b3796 tRNA argX NC_000913.2 3980398 3980474 D tRNA-Arg 3980398..3980474 Escherichia coli K12 945107 b3797 tRNA hisR NC_000913.2 3980532 3980608 D tRNA-His 3980532..3980608 Escherichia coli K12 948305 b3798 tRNA leuT NC_000913.2 3980629 3980715 D tRNA-Leu 3980629..3980715 Escherichia coli K12 948304 b3799 tRNA proM NC_000913.2 3980758 3980834 D tRNA-Pro 3980758..3980834 Escherichia coli K12 948303 b3852 tRNA ileT NC_000913.2 4035164 4035240 D tRNA-Ile 4035164..4035240 Escherichia coli K12 948339 b3853 tRNA alaT NC_000913.2 4035283 4035358 D tRNA-Ala 4035283..4035358 Escherichia coli K12 948337 b3969 tRNA gltT NC_000913.2 4166395 4166470 D tRNA-Glu 4166395..4166470 Escherichia coli K12 948465 b3976 tRNA thrU NC_000913.2 4173411 4173486 D tRNA-Thr 4173411..4173486 Escherichia coli K12 948476 b3977 tRNA tyrU NC_000913.2 4173495 4173579 D tRNA-Tyr 4173495..4173579 Escherichia coli K12 948474 b3978 tRNA glyT NC_000913.2 4173696 4173770 D tRNA-Gly 4173696..4173770 Escherichia coli K12 948481 b3979 tRNA thrT NC_000913.2 4173777 4173852 D tRNA-Thr 4173777..4173852 Escherichia coli K12 948480 b4008 tRNA gltV NC_000913.2 4207797 4207872 D tRNA-Glu 4207797..4207872 Escherichia coli K12 948510 b4134 tRNA pheU NC_000913.2 4360574 4360649 R tRNA-Phe complement(4360574..4360649) Escherichia coli K12 948651 b4163 tRNA glyV NC_000913.2 4390383 4390458 D tRNA-Gly 4390383..4390458 Escherichia coli K12 948682 b4164 tRNA glyX NC_000913.2 4390495 4390570 D tRNA-Gly 4390495..4390570 Escherichia coli K12 948681 b4165 tRNA glyY NC_000913.2 4390606 4390681 D tRNA-Gly 4390606..4390681 Escherichia coli K12 948687 b4270 tRNA leuX NC_000913.2 4494428 4494512 D tRNA-Leu 4494428..4494512 Escherichia coli K12 948803 b4368 tRNA leuV NC_000913.2 4604102 4604188 R tRNA-Leu complement(4604102..4604188) Escherichia coli K12 948873 b4369 tRNA leuP NC_000913.2 4604223 4604309 R tRNA-Leu complement(4604223..4604309) Escherichia coli K12 948875 b4370 tRNA leuQ NC_000913.2 4604338 4604424 R tRNA-Leu complement(4604338..4604424) Escherichia coli K12 948893 b0201 rRNA rrsH NC_000913.2 223771 225312 D 16S ribosomal RNA of rrnH operon 223771..225312 Escherichia coli K12 944897 b0204 rRNA rrlH NC_000913.2 225759 228662 D 23S ribosomal RNA of rrnH operon 225759..228662 Escherichia coli K12 944900 b0205 rRNA rrfH NC_000913.2 228756 228875 D 5S ribosomal RNA of rrnH operon 228756..228875 Escherichia coli K12 944898 b2588 rRNA rrfG NC_000913.2 2724091 2724210 R 5S ribosomal RNA of rrnG operon complement(2724091..2724210) Escherichia coli K12 947070 b2589 rRNA rrlG NC_000913.2 2724303 2727206 R 23S ribosomal RNA of rrnG operon complement(2724303..2727206) Escherichia coli K12 947585 b2591 rRNA rrsG NC_000913.2 2727638 2729179 R 16S ribosomal RNA of rrnG operon complement(2727638..2729179) Escherichia coli K12 947071 b3272 rRNA rrfF NC_000913.2 3421445 3421564 R 5S ribosomal RNA of rrnD operon complement(3421445..3421564) Escherichia coli K12 947771 b3274 rRNA rrfD NC_000913.2 3421690 3421809 R 5S ribosomal RNA of rrnD operon complement(3421690..3421809) Escherichia coli K12 947769 b3275 rRNA rrlD NC_000913.2 3421902 3424805 R 23S ribosomal RNA of rrnD operon complement(3421902..3424805) Escherichia coli K12 947773 b3278 rRNA rrsD NC_000913.2 3425243 3426784 R 16S ribosomal RNA of rrnD operon complement(3425243..3426784) Escherichia coli K12 947777 b3756 rRNA rrsC NC_000913.2 3939831 3941372 D 16S ribosomal RNA of rrnC operon 3939831..3941372 Escherichia coli K12 948270 b3758 rRNA rrlC NC_000913.2 3941727 3944630 D 23S ribosomal RNA of rrnC operon 3941727..3944630 Escherichia coli K12 948268 b3759 rRNA rrfC NC_000913.2 3944723 3944842 D 5S ribosomal RNA of rrnC operon 3944723..3944842 Escherichia coli K12 948273 b3851 rRNA rrsA NC_000913.2 4033554 4035095 D 16S ribosomal RNA of rrnA operon 4033554..4035095 Escherichia coli K12 948332 b3854 rRNA rrlA NC_000913.2 4035542 4038446 D 23S ribosomal RNA of rrnA operon 4035542..4038446 Escherichia coli K12 948341 b3855 rRNA rrfA NC_000913.2 4038540 4038659 D 5S ribosomal RNA of rrnA operon 4038540..4038659 Escherichia coli K12 948345 b3968 rRNA rrsB NC_000913.2 4164682 4166223 D 16S ribosomal RNA of rrnB operon 4164682..4166223 Escherichia coli K12 948466 b3970 rRNA rrlB NC_000913.2 4166664 4169567 D 23S ribosomal RNA of rrnB operon 4166664..4169567 Escherichia coli K12 948473 b3971 rRNA rrfB NC_000913.2 4169660 4169779 D 5S ribosomal RNA of rrnB operon 4169660..4169779 Escherichia coli K12 948471 b4007 rRNA rrsE NC_000913.2 4206170 4207711 D 16S ribosomal RNA of rrnE operon 4206170..4207711 Escherichia coli K12 948511 b4009 rRNA rrlE NC_000913.2 4208066 4210969 D 23S ribosomal RNA of rrnE operon 4208066..4210969 Escherichia coli K12 948509 b4010 rRNA rrfE NC_000913.2 4211063 4211182 D 5S ribosomal RNA of rrnE operon 4211063..4211182 Escherichia coli K12 948516