-- dump date 20110802_184409 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type NP_414542.1 16127995 944742 190..255 1 NC_000913.2 GO_process: threonine biosynthetic process [goid 0009088]; thr operon leader peptide 255 thrL 944742 thrL Escherichia coli K12 thr operon leader peptide NP_414542.1 190 D 83333 CDS NP_414543.1 16127996 945803 337..2799 1 NC_000913.2 bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal); GO_component: cytoplasm [goid 0005737]; GO_process: threonine biosynthetic process [goid 0009088]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: homoserine biosynthetic process [goid 0009090]; fused aspartokinase I and homoserine dehydrogenase I 2799 thrA 945803 thrA Escherichia coli K12 fused aspartokinase I and homoserine dehydrogenase I NP_414543.1 337 D 83333 CDS NP_414544.1 16127997 947498 2801..3733 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: threonine biosynthetic process [goid 0009088]; homoserine kinase 3733 thrB 947498 thrB Escherichia coli K12 homoserine kinase NP_414544.1 2801 D 83333 CDS NP_414545.1 16127998 945198 3734..5020 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: threonine biosynthetic process [goid 0009088]; threonine synthase 5020 thrC 945198 thrC Escherichia coli K12 threonine synthase NP_414545.1 3734 D 83333 CDS NP_414546.1 16127999 944747 5234..5530 1 NC_000913.2 predicted protein 5530 yaaX 944747 yaaX Escherichia coli K12 predicted protein NP_414546.1 5234 D 83333 CDS NP_414547.1 16128000 944749 complement(5683..6459) 1 NC_000913.2 conserved protein 6459 yaaA 944749 yaaA Escherichia coli K12 conserved protein NP_414547.1 5683 R 83333 CDS NP_414548.1 16128001 944745 complement(6529..7959) 1 NC_000913.2 inner membrane transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 7959 yaaJ 944745 yaaJ Escherichia coli K12 predicted transporter NP_414548.1 6529 R 83333 CDS NP_414549.1 16128002 944748 8238..9191 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; transaldolase B 9191 talB 944748 talB Escherichia coli K12 transaldolase B NP_414549.1 8238 D 83333 CDS NP_414550.1 16128003 944760 9306..9893 1 NC_000913.2 putative molybdochetalase in molybdopterine biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; predicted molybdochelatase 9893 mog 944760 mog Escherichia coli K12 predicted molybdochelatase NP_414550.1 9306 D 83333 CDS NP_414551.1 16128004 944792 complement(9928..10494) 1 NC_000913.2 conserved inner membrane protein associated with acetate transport 10494 yaaH 944792 yaaH Escherichia coli K12 conserved inner membrane protein associated with acetate transport NP_414551.1 9928 R 83333 CDS NP_414552.1 16128005 944771 complement(10643..11356) 1 NC_000913.2 conserved protein 11356 yaaW 944771 yaaW Escherichia coli K12 conserved protein NP_414552.1 10643 R 83333 CDS NP_414554.1 16128007 944751 complement(11382..11786) 1 NC_000913.2 predicted protein 11786 yaaI 944751 yaaI Escherichia coli K12 predicted protein NP_414554.1 11382 R 83333 CDS NP_414555.1 16128008 944750 12163..14079 1 NC_000913.2 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; GO_process: response to osmotic stress [goid 0006970]; chaperone Hsp70, co-chaperone with DnaJ 14079 dnaK 944750 dnaK Escherichia coli K12 chaperone Hsp70, co-chaperone with DnaJ NP_414555.1 12163 D 83333 CDS NP_414556.1 16128009 944753 14168..15298 1 NC_000913.2 chaperone with DnaK; heat shock protein; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; chaperone Hsp40, co-chaperone with DnaK 15298 dnaJ 944753 dnaJ Escherichia coli K12 chaperone Hsp40, co-chaperone with DnaK NP_414556.1 14168 D 83333 CDS NP_414557.1 16128010 944754 15445..16557 1 NC_000913.2 IS186/IS421 transposase 16557 insL 944754 insL Escherichia coli K12 IS186/IS421 transposase NP_414557.1 15445 D 83333 CDS NP_414559.1 16128012 944756 complement(16751..16960) 1 NC_000913.2 regulatory peptide whose translation enables hokC (gef) expression; regulatory protein for HokC, overlaps CDS of hokC 16960 mokC 944756 mokC Escherichia coli K12 regulatory protein for HokC, overlaps CDS of hokC NP_414559.1 16751 R 83333 CDS YP_025292.1 49175991 2847744 complement(16751..16903) 1 NC_000913.2 small toxic membrane polypeptide; toxic membrane protein, small 16903 hokC 2847744 hokC Escherichia coli K12 toxic membrane protein, small YP_025292.1 16751 R 83333 CDS NP_414560.1 16128013 944758 17489..18655 1 NC_000913.2 Na+/H antiporter, pH dependent; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to pH [goid 0009268]; sodium-proton antiporter 18655 nhaA 944758 nhaA Escherichia coli K12 sodium-proton antiporter NP_414560.1 17489 D 83333 CDS NP_414561.1 16128014 944757 18715..19620 1 NC_000913.2 transcriptional activator of nhaA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to pH [goid 0009268]; DNA-binding transcriptional activator 19620 nhaR 944757 nhaR Escherichia coli K12 DNA-binding transcriptional activator NP_414561.1 18715 D 83333 CDS NP_414562.1 16128015 944743 complement(19811..20314) 1 NC_000913.2 IS1 transposase InsAB' 20314 insB 944743 insB Escherichia coli K12 IS1 transposase InsAB' NP_414562.1 19811 R 83333 CDS NP_414563.1 16128016 948449 complement(20233..20508) 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 20508 insA 948449 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA NP_414563.1 20233 R 83333 CDS NP_414564.1 16128017 944759 complement(20815..21078) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S20 21078 rpsT 944759 rpsT Escherichia coli K12 30S ribosomal subunit protein S20 NP_414564.1 20815 R 83333 CDS NP_414565.1 16128018 949128 21181..21399 1 NC_000913.2 predicted protein 21399 yaaY 949128 yaaY Escherichia coli K12 predicted protein NP_414565.1 21181 D 83333 CDS NP_414566.1 16128019 949129 21407..22348 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; bifunctional riboflavin kinase/FAD synthetase 22348 ribF 949129 ribF Escherichia coli K12 bifunctional riboflavin kinase/FAD synthetase NP_414566.1 21407 D 83333 CDS NP_414567.1 16128020 944761 22391..25207 1 NC_000913.2 isoleucine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; isoleucyl-tRNA synthetase 25207 ileS 944761 ileS Escherichia coli K12 isoleucyl-tRNA synthetase NP_414567.1 22391 D 83333 CDS NP_414568.1 16128021 944800 25207..25701 1 NC_000913.2 prolipoprotein signal peptidase (SPase II); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; prolipoprotein signal peptidase (signal peptidase II) 25701 lspA 944800 lspA Escherichia coli K12 prolipoprotein signal peptidase (signal peptidase II) NP_414568.1 25207 D 83333 CDS NP_414569.1 16128022 944807 25826..26275 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 26275 fkpB 944807 fkpB Escherichia coli K12 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) NP_414569.1 25826 D 83333 CDS NP_414570.1 16128023 944777 26277..27227 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: response to drug [goid 0042493]; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein 27227 ispH 944777 ispH Escherichia coli K12 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein NP_414570.1 26277 D 83333 CDS NP_414571.1 16128024 944796 27293..28207 1 NC_000913.2 GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; ribonucleoside hydrolase 3 28207 rihC 944796 rihC Escherichia coli K12 ribonucleoside hydrolase 3 NP_414571.1 27293 D 83333 CDS NP_414572.1 16128025 944762 28374..29195 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; dihydrodipicolinate reductase 29195 dapB 944762 dapB Escherichia coli K12 dihydrodipicolinate reductase NP_414572.1 28374 D 83333 CDS NP_414573.1 16128026 949025 29651..30799 1 NC_000913.2 GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; carbamoyl phosphate synthetase small subunit, glutamine amidotransferase 30799 carA 949025 carA Escherichia coli K12 carbamoyl phosphate synthetase small subunit, glutamine amidotransferase NP_414573.1 29651 D 83333 CDS NP_414574.1 16128027 944775 30817..34038 1 NC_000913.2 GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; carbamoyl-phosphate synthase large subunit 34038 carB 944775 carB Escherichia coli K12 carbamoyl-phosphate synthase large subunit NP_414574.1 30817 D 83333 CDS NP_414576.4 90111079 944795 34300..34695 1 NC_000913.2 transcriptional regulator of cai operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amine catabolic process [goid 0009310]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 34695 caiF 944795 caiF Escherichia coli K12 DNA-binding transcriptional activator NP_414576.4 34300 D 83333 CDS NP_414577.2 90111080 948999 complement(34781..35371) 1 NC_000913.2 possible synthesis of cofactor for carnitine racemase and dehydratase; GO_process: amine catabolic process [goid 0009310]; GO_process: carnitine catabolic process [goid 0042413]; predicted acyl transferase 35371 caiE 948999 caiE Escherichia coli K12 predicted acyl transferase NP_414577.2 34781 R 83333 CDS NP_414578.1 16128030 948995 complement(35377..36270) 1 NC_000913.2 carnitine racemase; GO_process: amine catabolic process [goid 0009310]; GO_process: carnitine catabolic process [goid 0042413]; crotonobetainyl CoA hydratase 36270 caiD 948995 caiD Escherichia coli K12 crotonobetainyl CoA hydratase NP_414578.1 35377 R 83333 CDS NP_414579.3 49175993 944886 complement(36271..37839) 1 NC_000913.2 probable crotonobetaine/carnitine-CoA ligase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amine catabolic process [goid 0009310]; predicted crotonobetaine CoA ligase:carnitine CoA ligase 37839 caiC 944886 caiC Escherichia coli K12 predicted crotonobetaine CoA ligase:carnitine CoA ligase NP_414579.3 36271 R 83333 CDS NP_414580.1 16128032 948997 complement(37898..39115) 1 NC_000913.2 l-carnitine dehydratase; GO_component: cytoplasm [goid 0005737]; GO_process: carnitine catabolic process [goid 0042413]; GO_process: amine catabolic process [goid 0009310]; crotonobetainyl CoA:carnitine CoA transferase 39115 caiB 948997 caiB Escherichia coli K12 crotonobetainyl CoA:carnitine CoA transferase NP_414580.1 37898 R 83333 CDS NP_414581.1 16128033 949064 complement(39244..40386) 1 NC_000913.2 probable carnitine operon oxidoreductase; GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; GO_process: glyoxylate cycle [goid 0006097]; GO_process: amine catabolic process [goid 0009310]; GO_process: carnitine catabolic process [goid 0042413]; crotonobetaine reductase subunit II, FAD-binding 40386 caiA 949064 caiA Escherichia coli K12 crotonobetaine reductase subunit II, FAD-binding NP_414581.1 39244 R 83333 CDS NP_414582.1 16128034 944765 complement(40417..41931) 1 NC_000913.2 probable carnitine transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted transporter 41931 caiT 944765 caiT Escherichia coli K12 predicted transporter NP_414582.1 40417 R 83333 CDS NP_414583.2 90111081 947316 42403..43173 1 NC_000913.2 probable flavoprotein subunit, carnitine metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain 43173 fixA 947316 fixA Escherichia coli K12 predicted electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain NP_414583.2 42403 D 83333 CDS NP_414584.1 16128036 948939 43188..44129 1 NC_000913.2 probable flavoprotein subunit, carnitine metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein 44129 fixB 948939 fixB Escherichia coli K12 predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein NP_414584.1 43188 D 83333 CDS NP_414585.1 16128037 948958 44180..45466 1 NC_000913.2 flavoprotein; electron transport; GO_process: carnitine catabolic process [goid 0042413]; predicted oxidoreductase with FAD/NAD(P)-binding domain 45466 fixC 948958 fixC Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain NP_414585.1 44180 D 83333 CDS NP_414586.1 16128038 948590 45463..45750 1 NC_000913.2 putative ferredoxin; GO_process: carnitine catabolic process [goid 0042413]; predicted 4Fe-4S ferredoxin-type protein 45750 fixX 948590 fixX Escherichia coli K12 predicted 4Fe-4S ferredoxin-type protein NP_414586.1 45463 D 83333 CDS NP_414587.1 16128039 944766 45807..47138 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 47138 yaaU 944766 yaaU Escherichia coli K12 predicted transporter NP_414587.1 45807 D 83333 CDS NP_414588.1 16128040 944767 47246..47776 1 NC_000913.2 putative NAD(P)H oxidoreductase; flavoprotein subunit for the KefC potassium efflux system 47776 kefF 944767 kefF Escherichia coli K12 flavoprotein subunit for the KefC potassium efflux system NP_414588.1 47246 D 83333 CDS NP_414589.1 16128041 944773 47769..49631 1 NC_000913.2 K+ efflux antiporter, glutathione-regulated; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: potassium:hydrogen antiporter activity [goid 0015386]; potassium:proton antiporter 49631 kefC 944773 kefC Escherichia coli K12 potassium:proton antiporter NP_414589.1 47769 D 83333 CDS NP_414590.1 16128042 944790 49823..50302 1 NC_000913.2 dihydrofolate reductase type I; trimethoprim resistance; GO_process: folic acid biosynthetic process [goid 0046656]; dihydrofolate reductase 50302 folA 944790 folA Escherichia coli K12 dihydrofolate reductase NP_414590.1 49823 D 83333 CDS NP_414591.1 16128043 944770 complement(50380..51222) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; diadenosine tetraphosphatase 51222 apaH 944770 apaH Escherichia coli K12 diadenosine tetraphosphatase NP_414591.1 50380 R 83333 CDS NP_414592.1 16128044 944772 complement(51229..51606) 1 NC_000913.2 protein associated with Co2+ and Mg2+ efflux 51606 apaG 944772 apaG Escherichia coli K12 protein associated with Co2+ and Mg2+ efflux NP_414592.1 51229 R 83333 CDS NP_414593.1 16128045 944939 complement(51609..52430) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; GO_process: response to drug [goid 0042493]; S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase 52430 ksgA 944939 ksgA Escherichia coli K12 S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase NP_414593.1 51609 R 83333 CDS NP_414594.1 16128046 944919 complement(52427..53416) 1 NC_000913.2 pyridoxine biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent 53416 pdxA 944919 pdxA Escherichia coli K12 4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent NP_414594.1 52427 R 83333 CDS NP_414595.1 16128047 944812 complement(53416..54702) 1 NC_000913.2 survival protein; GO_component: cell outer membrane [goid 0009279]; GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase (PPIase) 54702 surA 944812 surA Escherichia coli K12 peptidyl-prolyl cis-trans isomerase (PPIase) NP_414595.1 53416 R 83333 CDS NP_414596.1 16128048 945011 complement(54755..57109) 1 NC_000913.2 organic solvent tolerance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; exported protein required for envelope biosynthesis and integrity 57109 imp 945011 imp Escherichia coli K12 exported protein required for envelope biosynthesis and integrity NP_414596.1 54755 R 83333 CDS NP_414597.1 16128049 948992 57364..58179 1 NC_000913.2 GO_process: protein folding [goid 0006457]; DnaJ-like protein, membrane anchored 58179 djlA 948992 djlA Escherichia coli K12 DnaJ-like protein, membrane anchored NP_414597.1 57364 D 83333 CDS b4659 944776 join(58474..59052,59052..59228,59228..59269) 1 NC_000913.2 predicted protein; 59269 yabP 944776 yabP Escherichia coli K12 58474 D 83333 CDS NP_414600.1 16128052 946262 complement(59687..60346) 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) 60346 rluA 946262 rluA Escherichia coli K12 pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) NP_414600.1 59687 R 83333 CDS NP_414601.1 16128053 948523 complement(60358..63264) 1 NC_000913.2 probable ATP-dependent RNA helicase; GO_process: RNA modification [goid 0009451]; RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) 63264 hepA 948523 hepA Escherichia coli K12 RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) NP_414601.1 60358 R 83333 CDS NP_414602.1 16128054 944779 complement(63429..65780) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; DNA polymerase II 65780 polB 944779 polB Escherichia coli K12 DNA polymerase II NP_414602.1 63429 R 83333 CDS NP_414603.1 16128055 945294 complement(65855..66550) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; L-ribulose-5-phosphate 4-epimerase 66550 araD 945294 araD Escherichia coli K12 L-ribulose-5-phosphate 4-epimerase NP_414603.1 65855 R 83333 CDS NP_414604.1 16128056 947511 complement(66835..68337) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; L-arabinose isomerase 68337 araA 947511 araA Escherichia coli K12 L-arabinose isomerase NP_414604.1 66835 R 83333 CDS NP_414605.1 16128057 946017 complement(68348..70048) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; L-ribulokinase 70048 araB 946017 araB Escherichia coli K12 L-ribulokinase NP_414605.1 68348 R 83333 CDS NP_414606.1 16128058 944780 70387..71265 1 NC_000913.2 transcriptional regulator for ara operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 71265 araC 944780 araC Escherichia coli K12 DNA-binding transcriptional dual regulator NP_414606.1 70387 D 83333 CDS NP_414607.1 16128059 944783 71351..72115 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 72115 yabI 944783 yabI Escherichia coli K12 conserved inner membrane protein NP_414607.1 71351 D 83333 CDS NP_414608.1 16128060 944785 complement(72229..72927) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin transporter subunit 72927 thiQ 944785 thiQ Escherichia coli K12 thiamin transporter subunit NP_414608.1 72229 R 83333 CDS NP_414609.1 16128061 944784 complement(72911..74521) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: thiamin biosynthetic process [goid 0009228]; fused thiamin transporter subunits of ABC superfamily: membrane components 74521 thiP 944784 thiP Escherichia coli K12 fused thiamin transporter subunits of ABC superfamily: membrane components NP_414609.1 72911 R 83333 CDS NP_414610.1 16128062 946306 complement(74497..75480) 1 NC_000913.2 thiamin-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin transporter subunit 75480 tbpA 946306 tbpA Escherichia coli K12 thiamin transporter subunit NP_414610.1 74497 R 83333 CDS NP_414611.1 16128063 944788 complement(75644..77299) 1 NC_000913.2 putative transport protein; GO_component: periplasmic space [goid 0042597]; DNA-binding transcriptional regulator 77299 sgrR 944788 sgrR Escherichia coli K12 DNA-binding transcriptional regulator NP_414611.1 75644 R 83333 CDS YP_025293.1 49175994 944793 77621..78799 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: lactose/glucose efflux transporter activity [goid 0015543]; GO_process: carbohydrate catabolic process [goid 0016052]; broad specificity sugar efflux system 78799 setA 944793 setA Escherichia coli K12 broad specificity sugar efflux system YP_025293.1 77621 D 83333 CDS NP_414613.1 16128065 945642 complement(78848..79453) 1 NC_000913.2 isopropylmalate isomerase subunit; GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 3-isopropylmalate isomerase subunit 79453 leuD 945642 leuD Escherichia coli K12 3-isopropylmalate isomerase subunit NP_414613.1 78848 R 83333 CDS NP_414614.1 16128066 945076 complement(79464..80864) 1 NC_000913.2 3-isopropylmalate isomerase (dehydratase) subunit; GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 3-isopropylmalate isomerase subunit, dehydratase component 80864 leuC 945076 leuC Escherichia coli K12 3-isopropylmalate isomerase subunit, dehydratase component NP_414614.1 79464 R 83333 CDS NP_414615.4 90111082 944798 complement(80867..81958) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 3-isopropylmalate dehydrogenase 81958 leuB 944798 leuB Escherichia coli K12 3-isopropylmalate dehydrogenase NP_414615.4 80867 R 83333 CDS NP_414616.1 16128068 947465 complement(81958..83529) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; 2-isopropylmalate synthase 83529 leuA 947465 leuA Escherichia coli K12 2-isopropylmalate synthase NP_414616.1 81958 R 83333 CDS NP_414617.1 16128069 946072 complement(83622..83708) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: leucine biosynthetic process [goid 0009098]; leu operon leader peptide 83708 leuL 946072 leuL Escherichia coli K12 leu operon leader peptide NP_414617.1 83622 R 83333 CDS NP_414618.4 90111083 949034 84368..85312 1 NC_000913.2 probable transcriptional activator for leuABCD operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: leucine biosynthetic process [goid 0009098]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 85312 leuO 949034 leuO Escherichia coli K12 DNA-binding transcriptional activator NP_414618.4 84368 D 83333 CDS YP_025294.2 90111084 948793 85630..87354 1 NC_000913.2 acetolactate synthase III, valine sensitive, large subunit; acetolactate synthase III, large subunit 87354 ilvI 948793 ilvI Escherichia coli K12 acetolactate synthase III, large subunit YP_025294.2 85630 D 83333 CDS NP_414620.1 16128071 947267 87357..87848 1 NC_000913.2 acetolactate synthase III, valine sensitive, small subunit; acetolactate synthase III, thiamin-dependent, small subunit 87848 ilvH 947267 ilvH Escherichia coli K12 acetolactate synthase III, thiamin-dependent, small subunit NP_414620.1 87357 D 83333 CDS NP_414622.1 16128073 944804 88028..89032 1 NC_000913.2 transcriptional repressor of fru operon and others; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glycolysis [goid 0006096]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 89032 fruR 944804 fruR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_414622.1 88028 D 83333 CDS NP_414623.1 16128074 944810 89634..90092 1 NC_000913.2 conserved protein 90092 mraZ 944810 mraZ Escherichia coli K12 conserved protein NP_414623.1 89634 D 83333 CDS NP_414624.1 16128075 944806 90094..91035 1 NC_000913.2 putative apolipoprotein; GO_process: lipoprotein biosynthetic process [goid 0042158]; S-adenosyl-dependent methyltransferase activity on membrane-located substrates 91035 mraW 944806 mraW Escherichia coli K12 S-adenosyl-dependent methyltransferase activity on membrane-located substrates NP_414624.1 90094 D 83333 CDS NP_414625.1 16128076 944803 91032..91397 1 NC_000913.2 cell division protein; ingrowth of wall at septum; membrane bound cell division protein at septum containing leucine zipper motif 91397 ftsL 944803 ftsL Escherichia coli K12 membrane bound cell division protein at septum containing leucine zipper motif NP_414625.1 91032 D 83333 CDS NP_414626.1 16128077 944799 91413..93179 1 NC_000913.2 septum formation; penicillin-binding protein 3; peptidoglycan synthetase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) 93179 ftsI 944799 ftsI Escherichia coli K12 transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3) NP_414626.1 91413 D 83333 CDS NP_414627.1 16128078 944791 93166..94653 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase 94653 murE 944791 murE Escherichia coli K12 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase NP_414627.1 93166 D 83333 CDS NP_414628.1 16128079 944813 94650..96008 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: peptidoglycan metabolic process [goid 0000270]; UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase 96008 murF 944813 murF Escherichia coli K12 UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase NP_414628.1 94650 D 83333 CDS NP_414629.1 16128080 944814 96002..97084 1 NC_000913.2 phospho-N-acetylmuramoyl-pentapeptide transferase?; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; phospho-N-acetylmuramoyl-pentapeptide transferase 97084 mraY 944814 mraY Escherichia coli K12 phospho-N-acetylmuramoyl-pentapeptide transferase NP_414629.1 96002 D 83333 CDS NP_414630.1 16128081 944818 97087..98403 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 98403 murD 944818 murD Escherichia coli K12 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase NP_414630.1 97087 D 83333 CDS NP_414631.1 16128082 946322 98403..99647 1 NC_000913.2 cell division; membrane protein involved in shape determination; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; integral membrane protein involved in stabilizing FstZ ring during cell division 99647 ftsW 946322 ftsW Escherichia coli K12 integral membrane protein involved in stabilizing FstZ ring during cell division NP_414631.1 98403 D 83333 CDS NP_414632.1 16128083 946321 99644..100711 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylglucosaminyl transferase 100711 murG 946321 murG Escherichia coli K12 N-acetylglucosaminyl transferase NP_414632.1 99644 D 83333 CDS NP_414633.1 16128084 946153 100765..102240 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylmuramate:L-alanine ligase 102240 murC 946153 murC Escherichia coli K12 UDP-N-acetylmuramate:L-alanine ligase NP_414633.1 100765 D 83333 CDS NP_414634.1 16128085 946324 102233..103153 1 NC_000913.2 D-alanine-D-alanine ligase B, affects cell division; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; D-alanine:D-alanine ligase 103153 ddlB 946324 ddlB Escherichia coli K12 D-alanine:D-alanine ligase NP_414634.1 102233 D 83333 CDS NP_414635.1 16128086 944823 103155..103985 1 NC_000913.2 cell division protein; ingrowth of wall at septum; GO_component: organelle inner membrane [goid 0019866]; membrane anchored protein involved in growth of wall at septum 103985 ftsQ 944823 ftsQ Escherichia coli K12 membrane anchored protein involved in growth of wall at septum NP_414635.1 103155 D 83333 CDS NP_414636.1 16128087 944778 103982..105244 1 NC_000913.2 ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; ATP-binding cell division protein involved in recruitment of FtsK to Z ring 105244 ftsA 944778 ftsA Escherichia coli K12 ATP-binding cell division protein involved in recruitment of FtsK to Z ring NP_414636.1 103982 D 83333 CDS NP_414637.1 16128088 944786 105305..106456 1 NC_000913.2 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase; GO_component: cytoplasm [goid 0005737]; GTP-binding tubulin-like cell division protein 106456 ftsZ 944786 ftsZ Escherichia coli K12 GTP-binding tubulin-like cell division protein NP_414637.1 105305 D 83333 CDS NP_414638.1 16128089 944816 106557..107474 1 NC_000913.2 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-3-O-acyl N-acetylglucosamine deacetylase 107474 lpxC 944816 lpxC Escherichia coli K12 UDP-3-O-acyl N-acetylglucosamine deacetylase NP_414638.1 106557 D 83333 CDS NP_414639.2 90111085 944831 107705..108217 1 NC_000913.2 regulator of secA translation 108217 secM 944831 secM Escherichia coli K12 regulator of secA translation NP_414639.2 107705 D 83333 CDS NP_414640.1 16128091 944821 108279..110984 1 NC_000913.2 preprotein translocase; secretion protein; GO_component: cytoplasm [goid 0005737]; preprotein translocase subunit, ATPase 110984 secA 944821 secA Escherichia coli K12 preprotein translocase subunit, ATPase NP_414640.1 108279 D 83333 CDS NP_414641.1 16128092 944824 111044..111433 1 NC_000913.2 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions; GO_component: cytoplasm [goid 0005737]; nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP 111433 mutT 944824 mutT Escherichia coli K12 nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP NP_414641.1 111044 D 83333 CDS NP_414643.1 16128094 945630 complement(111649..111846) 1 NC_000913.2 conserved protein 111846 yacG 945630 yacG Escherichia coli K12 conserved protein NP_414643.1 111649 R 83333 CDS NP_414644.1 16128095 944873 complement(111856..112599) 1 NC_000913.2 conserved protein 112599 yacF 944873 yacF Escherichia coli K12 conserved protein NP_414644.1 111856 R 83333 CDS NP_414645.1 16128096 949060 complement(112599..113219) 1 NC_000913.2 putative DNA repair protein; dephospho-CoA kinase 113219 coaE 949060 coaE Escherichia coli K12 dephospho-CoA kinase NP_414645.1 112599 R 83333 CDS NP_414646.1 16128097 948986 113444..114487 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GMP reductase 114487 guaC 948986 guaC Escherichia coli K12 GMP reductase NP_414646.1 113444 D 83333 CDS NP_414648.1 16128099 945806 complement(114522..115724) 1 NC_000913.2 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; assembly protein in type IV pilin biogenesis, transmembrane protein 115724 hofC 945806 hofC Escherichia coli K12 assembly protein in type IV pilin biogenesis, transmembrane protein NP_414648.1 114522 R 83333 CDS NP_414649.1 16128100 947481 complement(115714..117099) 1 NC_000913.2 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake; GO_component: fimbrium [goid 0009289]; conserved protein with nucleoside triphosphate hydrolase domain 117099 hofB 947481 hofB Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_414649.1 115714 R 83333 CDS NP_414650.1 16128101 945817 complement(117109..117549) 1 NC_000913.2 prelipin peptidase dependent protein; GO_component: fimbrium [goid 0009289]; predicted major pilin subunit 117549 ppdD 945817 ppdD Escherichia coli K12 predicted major pilin subunit NP_414650.1 117109 R 83333 CDS NP_414651.1 16128102 948869 complement(117752..118645) 1 NC_000913.2 GO_process: NAD biosynthetic process [goid 0009435]; quinolinate phosphoribosyltransferase 118645 nadC 948869 nadC Escherichia coli K12 quinolinate phosphoribosyltransferase NP_414651.1 117752 R 83333 CDS NP_414652.1 16128103 948877 118733..119284 1 NC_000913.2 regulates ampC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; N-acetyl-anhydromuranmyl-L-alanine amidase 119284 ampD 948877 ampD Escherichia coli K12 N-acetyl-anhydromuranmyl-L-alanine amidase NP_414652.1 118733 D 83333 CDS NP_414653.1 16128104 946678 119281..120135 1 NC_000913.2 regulates ampC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted inner membrane protein 120135 ampE 946678 ampE Escherichia coli K12 predicted inner membrane protein NP_414653.1 119281 D 83333 CDS NP_414654.1 16128105 946018 complement(120178..121551) 1 NC_000913.2 aromatic amino acid transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; aromatic amino acid transporter 121551 aroP 946018 aroP Escherichia coli K12 aromatic amino acid transporter NP_414654.1 120178 R 83333 CDS NP_414655.1 16128106 944827 122092..122856 1 NC_000913.2 transcriptional regulator for pyruvate dehydrogenase complex; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glycolysis [goid 0006096]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 122856 pdhR 944827 pdhR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_414655.1 122092 D 83333 CDS NP_414656.1 16128107 944834 123017..125680 1 NC_000913.2 pyruvate dehydrogenase (decarboxylase component); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: acetyl-CoA biosynthetic process from pyruvate [goid 0006086]; GO_process: glycolysis [goid 0006096]; GO_process: glyoxylate catabolic process [goid 0009436]; GO_process: anaerobic respiration [goid 0009061]; pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding 125680 aceE 944834 aceE Escherichia coli K12 pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding NP_414656.1 123017 D 83333 CDS NP_414657.1 16128108 944794 125695..127587 1 NC_000913.2 pyruvate dehydrogenase (dihydrolipoyltransacetylase component); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: acetyl-CoA biosynthetic process from pyruvate [goid 0006086]; GO_process: glycolysis [goid 0006096]; GO_process: glyoxylate catabolic process [goid 0009436]; GO_process: anaerobic respiration [goid 0009061]; pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 127587 aceF 944794 aceF Escherichia coli K12 pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 NP_414657.1 125695 D 83333 CDS NP_414658.1 16128109 944854 127912..129336 1 NC_000913.2 lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: glycolysis [goid 0006096]; GO_process: acetyl-CoA biosynthetic process from pyruvate [goid 0006086]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glyoxylate catabolic process [goid 0009436]; lipoamide dehydrogenase, E3 component is part of three enzyme complexes 129336 lpd 944854 lpd Escherichia coli K12 lipoamide dehydrogenase, E3 component is part of three enzyme complexes NP_414658.1 127912 D 83333 CDS NP_414659.1 16128110 944868 complement(129407..131260) 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted protein 131260 yacH 944868 yacH Escherichia coli K12 predicted protein NP_414659.1 129407 R 83333 CDS NP_414660.1 16128111 944864 131615..134212 1 NC_000913.2 aconitate hydrase B; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 134212 acnB 944864 acnB Escherichia coli K12 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase NP_414660.1 131615 D 83333 CDS NP_414661.2 90111086 944809 134388..134750 1 NC_000913.2 conserved protein 134750 yacL 944809 yacL Escherichia coli K12 conserved protein NP_414661.2 134388 D 83333 CDS NP_414662.1 16128113 947719 complement(134788..135582) 1 NC_000913.2 GO_process: polyamine biosynthetic process [goid 0006596]; S-adenosylmethionine decarboxylase 135582 speD 947719 speD Escherichia coli K12 S-adenosylmethionine decarboxylase NP_414662.1 134788 R 83333 CDS NP_414663.1 16128114 947726 complement(135598..136464) 1 NC_000913.2 spermidine synthase = putrescine aminopropyltransferase; GO_process: polyamine biosynthetic process [goid 0006596]; spermidine synthase (putrescine aminopropyltransferase) 136464 speE 947726 speE Escherichia coli K12 spermidine synthase (putrescine aminopropyltransferase) NP_414663.1 135598 R 83333 CDS NP_414664.4 90111087 948472 complement(136570..136917) 1 NC_000913.2 predicted protein 136917 yacC 948472 yacC Escherichia coli K12 predicted protein NP_414664.4 136570 R 83333 CDS NP_414665.1 16128116 947736 137083..138633 1 NC_000913.2 multicopper oxidase (laccase) 138633 cueO 947736 cueO Escherichia coli K12 multicopper oxidase (laccase) NP_414665.1 137083 D 83333 CDS NP_414666.1 16128117 944830 complement(138835..141225) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: glucose metabolic process [goid 0006006]; GO_process: carbohydrate catabolic process [goid 0016052]; glucose dehydrogenase 141225 gcd 944830 gcd Escherichia coli K12 glucose dehydrogenase NP_414666.1 138835 R 83333 CDS NP_414667.4 90111088 946624 141431..141967 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; hypoxanthine phosphoribosyltransferase 141967 hpt 946624 hpt Escherichia coli K12 hypoxanthine phosphoribosyltransferase NP_414667.4 141431 D 83333 CDS NP_414668.1 16128119 944832 complement(142008..142670) 1 NC_000913.2 putative carbonic anhdrase; carbonic anhydrase 142670 can 944832 can Escherichia coli K12 carbonic anhydrase NP_414668.1 142008 R 83333 CDS NP_414669.1 16128120 944833 142779..143705 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 143705 yadG 944833 yadG Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_414669.1 142779 D 83333 CDS NP_414670.1 16128121 944836 143702..144472 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 144472 yadH 944836 yadH Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_414670.1 143702 D 83333 CDS NP_414671.1 16128122 947397 144577..145017 1 NC_000913.2 putative PTS enzyme II B component; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; predicted PTS Enzyme IIA 145017 yadI 947397 yadI Escherichia coli K12 predicted PTS Enzyme IIA NP_414671.1 144577 D 83333 CDS NP_414672.1 16128123 946536 145081..146310 1 NC_000913.2 conserved hypothetical protein; predicted polysaccharide deacetylase lipoprotein 146310 yadE 946536 yadE Escherichia coli K12 predicted polysaccharide deacetylase lipoprotein NP_414672.1 145081 D 83333 CDS NP_414673.1 16128124 945686 complement(146314..146694) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; aspartate 1-decarboxylase 146694 panD 945686 panD Escherichia coli K12 aspartate 1-decarboxylase NP_414673.1 146314 R 83333 CDS NP_414674.1 16128125 944781 146968..147870 1 NC_000913.2 predicted transposase 147870 yadD 944781 yadD Escherichia coli K12 predicted transposase NP_414674.1 146968 D 83333 CDS NP_414675.1 16128126 944958 complement(147944..148795) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; pantothenate synthetase 148795 panC 944958 panC Escherichia coli K12 pantothenate synthetase NP_414675.1 147944 R 83333 CDS NP_414676.1 16128127 944839 complement(148807..149601) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; 3-methyl-2-oxobutanoate hydroxymethyltransferase 149601 panB 944839 panB Escherichia coli K12 3-methyl-2-oxobutanoate hydroxymethyltransferase NP_414676.1 148807 R 83333 CDS NP_414677.1 16128128 944837 complement(149715..150953) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 150953 yadC 944837 yadC Escherichia coli K12 predicted fimbrial-like adhesin protein NP_414677.1 149715 R 83333 CDS NP_414678.1 16128129 944835 complement(151003..151599) 1 NC_000913.2 putative fimbrial protein; predicted fimbrial-like adhesin protein 151599 yadK 944835 yadK Escherichia coli K12 predicted fimbrial-like adhesin protein NP_414678.1 151003 R 83333 CDS NP_414679.1 16128130 944829 complement(151626..152231) 1 NC_000913.2 putative fimbrial protein; predicted fimbrial-like adhesin protein 152231 yadL 944829 yadL Escherichia coli K12 predicted fimbrial-like adhesin protein NP_414679.1 151626 R 83333 CDS NP_414680.4 90111089 944828 complement(152243..152812) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 152812 yadM 944828 yadM Escherichia coli K12 predicted fimbrial-like adhesin protein NP_414680.4 152243 R 83333 CDS NP_414681.1 16128132 944819 complement(152829..155426) 1 NC_000913.2 probable outer membrane porin protein involved in fimbrial assembly; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane usher protein 155426 htrE 944819 htrE Escherichia coli K12 predicted outer membrane usher protein NP_414681.1 152829 R 83333 CDS NP_414682.1 16128133 944859 complement(155461..156201) 1 NC_000913.2 probable pilin chaperone similar to PapD; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 156201 ecpD 944859 ecpD Escherichia coli K12 predicted periplasmic pilin chaperone NP_414682.1 155461 R 83333 CDS NP_414683.1 16128134 944841 complement(156299..156883) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 156883 yadN 944841 yadN Escherichia coli K12 predicted fimbrial-like adhesin protein NP_414683.1 156299 R 83333 CDS NP_414684.1 16128135 948792 complement(157253..157732) 1 NC_000913.2 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; GO_process: folic acid biosynthetic process [goid 0046656]; 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase 157732 folK 948792 folK Escherichia coli K12 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase NP_414684.1 157253 R 83333 CDS NP_414685.4 162135892 947318 complement(157729..159126) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; poly(A) polymerase I 159126 pcnB 947318 pcnB Escherichia coli K12 poly(A) polymerase I NP_414685.4 157729 R 83333 CDS NP_414686.2 145698219 944846 complement(159186..160082) 1 NC_000913.2 putative tRNA synthetase; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glutamyl-Q tRNA(Asp) synthetase 160082 yadB 944846 yadB Escherichia coli K12 glutamyl-Q tRNA(Asp) synthetase NP_414686.2 159186 R 83333 CDS NP_414687.1 16128138 944850 complement(160149..160604) 1 NC_000913.2 dnaK suppressor protein; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein 160604 dksA 944850 dksA Escherichia coli K12 DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein NP_414687.1 160149 R 83333 CDS NP_414688.1 16128139 944855 complement(160782..161486) 1 NC_000913.2 probable regulator for maltose metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted DNA-binding transcriptional regulator 161486 sfsA 944855 sfsA Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414688.1 160782 R 83333 CDS NP_414689.4 90111091 944848 complement(161501..162031) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 2'-5' RNA ligase 162031 ligT 944848 ligT Escherichia coli K12 2'-5' RNA ligase NP_414689.4 161501 R 83333 CDS NP_414690.4 162135893 944845 162105..164534 1 NC_000913.2 helicase, ATP-dependent; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; predicted ATP-dependent helicase 164534 hrpB 944845 hrpB Escherichia coli K12 predicted ATP-dependent helicase NP_414690.4 162105 D 83333 CDS NP_414691.1 16128142 944843 164730..167264 1 NC_000913.2 peptidoglycan synthetase; penicillin-binding protein 1B; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino sugar biosynthetic process [goid 0046349]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; fused glycosyl transferase and transpeptidase 167264 mrcB 944843 mrcB Escherichia coli K12 fused glycosyl transferase and transpeptidase NP_414691.1 164730 D 83333 CDS NP_414692.1 16128143 944856 167484..169727 1 NC_000913.2 outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; ferrichrome outer membrane transporter 169727 fhuA 944856 fhuA Escherichia coli K12 ferrichrome outer membrane transporter NP_414692.1 167484 D 83333 CDS NP_414693.1 16128144 945250 169778..170575 1 NC_000913.2 ATP-binding component of hydroxymate-dependent iron transport; GO_component: cytoplasm [goid 0005737]; iron-hydroxamate transporter subunit 170575 fhuC 945250 fhuC Escherichia coli K12 iron-hydroxamate transporter subunit NP_414693.1 169778 D 83333 CDS NP_414694.1 16128145 947510 170575..171465 1 NC_000913.2 hydroxamate-dependent iron uptake, cytoplasmic membrane component; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: iron ion transport [goid 0006826]; iron-hydroxamate transporter subunit 171465 fhuD 947510 fhuD Escherichia coli K12 iron-hydroxamate transporter subunit NP_414694.1 170575 D 83333 CDS NP_414695.1 16128146 946890 171462..173444 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components 173444 fhuB 946890 fhuB Escherichia coli K12 fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components NP_414695.1 171462 D 83333 CDS NP_414696.1 16128147 946892 complement(173602..174882) 1 NC_000913.2 glutamate-1-semialdehyde aminotransferase (aminomutase) 174882 hemL 946892 hemL Escherichia coli K12 glutamate-1-semialdehyde aminotransferase (aminomutase) NP_414696.1 173602 R 83333 CDS NP_414697.1 16128148 946715 175107..176528 1 NC_000913.2 putative channel transporter; chloride channel, voltage-gated 176528 clcA 946715 clcA Escherichia coli K12 chloride channel, voltage-gated NP_414697.1 175107 D 83333 CDS NP_414698.1 16128149 944857 176610..176954 1 NC_000913.2 conserved protein 176954 yadR 944857 yadR Escherichia coli K12 conserved protein NP_414698.1 176610 D 83333 CDS NP_414699.1 16128150 949062 complement(177001..177624) 1 NC_000913.2 conserved inner membrane protein 177624 yadS 949062 yadS Escherichia coli K12 conserved inner membrane protein NP_414699.1 177001 R 83333 CDS NP_414700.1 16128151 947574 complement(177662..178462) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily 178462 btuF 947574 btuF Escherichia coli K12 vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily NP_414700.1 177662 R 83333 CDS NP_414701.1 16128152 948542 complement(178455..179153) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 179153 mtn 948542 mtn Escherichia coli K12 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase NP_414701.1 178455 R 83333 CDS NP_414702.1 16128153 947177 179237..180754 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; deoxyguanosine triphosphate triphosphohydrolase 180754 dgt 947177 dgt Escherichia coli K12 deoxyguanosine triphosphate triphosphohydrolase NP_414702.1 179237 D 83333 CDS NP_414703.1 16128154 947139 180884..182308 1 NC_000913.2 periplasmic serine protease Do; heat shock protein HtrA; GO_component: periplasmic space [goid 0042597]; GO_process: response to temperature stimulus [goid 0009266]; serine endoprotease (protease Do), membrane-associated 182308 degP 947139 degP Escherichia coli K12 serine endoprotease (protease Do), membrane-associated NP_414703.1 180884 D 83333 CDS NP_414704.4 90111093 944860 182463..183620 1 NC_000913.2 DNA-binding transcriptional activator 183620 cdaR 944860 cdaR Escherichia coli K12 DNA-binding transcriptional activator NP_414704.4 182463 D 83333 CDS NP_414705.1 16128156 947044 complement(183709..184095) 1 NC_000913.2 putative structural protein; conserved protein 184095 yaeH 947044 yaeH Escherichia coli K12 conserved protein NP_414705.1 183709 R 83333 CDS NP_414706.2 90111094 945002 complement(184257..185069) 1 NC_000913.2 predicted phosphatase 185069 yaeI 945002 yaeI Escherichia coli K12 predicted phosphatase NP_414706.2 184257 R 83333 CDS NP_414708.1 16128159 944862 complement(185123..185947) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 185947 dapD 944862 dapD Escherichia coli K12 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase NP_414708.1 185123 R 83333 CDS NP_414709.1 16128160 944863 complement(185978..188650) 1 NC_000913.2 protein PII; uridylyltransferase acts on regulator of glnA; GO_component: cytoplasm [goid 0005737]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: protein modification [goid 0006464]; uridylyltransferase 188650 glnD 944863 glnD Escherichia coli K12 uridylyltransferase NP_414709.1 185978 R 83333 CDS NP_414710.1 16128161 947882 complement(188712..189506) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; methionine aminopeptidase 189506 map 947882 map Escherichia coli K12 methionine aminopeptidase NP_414710.1 188712 R 83333 CDS NP_414711.1 16128162 947874 189874..190599 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S2 190599 rpsB 947874 rpsB Escherichia coli K12 30S ribosomal subunit protein S2 NP_414711.1 189874 D 83333 CDS NP_414712.1 16128163 944866 190857..191708 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; protein chain elongation factor EF-Ts 191708 tsf 944866 tsf Escherichia coli K12 protein chain elongation factor EF-Ts NP_414712.1 190857 D 83333 CDS NP_414713.1 16128164 944989 191855..192580 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uridylate kinase 192580 pyrH 944989 pyrH Escherichia coli K12 uridylate kinase NP_414713.1 191855 D 83333 CDS NP_414714.1 16128165 946122 192872..193429 1 NC_000913.2 ribosome releasing factor; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; GO_process: translational attenuation [goid 0009386]; ribosome recycling factor 193429 frr 946122 frr Escherichia coli K12 ribosome recycling factor NP_414714.1 192872 D 83333 CDS NP_414715.1 16128166 945019 193521..194717 1 NC_000913.2 1-deoxy-D-xylulose 5-phosphate reductoisomerase 194717 dxr 945019 dxr Escherichia coli K12 1-deoxy-D-xylulose 5-phosphate reductoisomerase NP_414715.1 193521 D 83333 CDS NP_414716.1 16128167 944874 194903..195664 1 NC_000913.2 undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase); GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; undecaprenyl pyrophosphate synthase 195664 ispU 944874 ispU Escherichia coli K12 undecaprenyl pyrophosphate synthase NP_414716.1 194903 D 83333 CDS NP_414717.2 90111095 944876 195677..196534 1 NC_000913.2 CDP-diglyceride synthetase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; CDP-diglyceride synthase 196534 cdsA 944876 cdsA Escherichia coli K12 CDP-diglyceride synthase NP_414717.2 195677 D 83333 CDS NP_414718.1 16128169 944871 196546..197898 1 NC_000913.2 zinc metallopeptidase 197898 rseP 944871 rseP Escherichia coli K12 zinc metallopeptidase NP_414718.1 196546 D 83333 CDS NP_414719.1 16128170 944870 197928..200360 1 NC_000913.2 putative outer membrane antigen; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; conserved protein 200360 yaeT 944870 yaeT Escherichia coli K12 conserved protein NP_414719.1 197928 D 83333 CDS NP_414720.1 16128171 944861 200482..200967 1 NC_000913.2 periplasmic molecular chaperone for outer membrane proteins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; periplasmic chaperone 200967 skp 944861 skp Escherichia coli K12 periplasmic chaperone NP_414720.1 200482 D 83333 CDS NP_414721.1 16128172 944882 200971..201996 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase 201996 lpxD 944882 lpxD Escherichia coli K12 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase NP_414721.1 200971 D 83333 CDS NP_414722.1 16128173 944888 202101..202556 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; (3R)-hydroxymyristol acyl carrier protein dehydratase 202556 fabZ 944888 fabZ Escherichia coli K12 (3R)-hydroxymyristol acyl carrier protein dehydratase NP_414722.1 202101 D 83333 CDS NP_414723.1 16128174 944849 202560..203348 1 NC_000913.2 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-N-acetylglucosamine acetyltransferase 203348 lpxA 944849 lpxA Escherichia coli K12 UDP-N-acetylglucosamine acetyltransferase NP_414723.1 202560 D 83333 CDS NP_414724.1 16128175 944838 203348..204496 1 NC_000913.2 tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; tetraacyldisaccharide-1-P synthase 204496 lpxB 944838 lpxB Escherichia coli K12 tetraacyldisaccharide-1-P synthase NP_414724.1 203348 D 83333 CDS NP_414725.1 16128176 944852 204493..205089 1 NC_000913.2 RNAse HII, degrades RNA of DNA-RNA hybrids; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; ribonuclease HII, degrades RNA of DNA-RNA hybrids 205089 rnhB 944852 rnhB Escherichia coli K12 ribonuclease HII, degrades RNA of DNA-RNA hybrids NP_414725.1 204493 D 83333 CDS NP_414726.1 16128177 944877 205126..208608 1 NC_000913.2 DNA polymerase III, alpha subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III alpha subunit 208608 dnaE 944877 dnaE Escherichia coli K12 DNA polymerase III alpha subunit NP_414726.1 205126 D 83333 CDS NP_414727.1 16128178 944895 208621..209580 1 NC_000913.2 acetylCoA carboxylase, carboxytransferase component, alpha subunit; GO_component: cytoplasm [goid 0005737]; acetyl-CoA carboxylase, carboxytransferase, alpha subunit 209580 accA 944895 accA Escherichia coli K12 acetyl-CoA carboxylase, carboxytransferase, alpha subunit NP_414727.1 208621 D 83333 CDS NP_414728.1 16128179 944887 209679..211820 1 NC_000913.2 GO_process: glycolysis [goid 0006096]; GO_process: carbohydrate catabolic process [goid 0016052]; lysine decarboxylase 2, constitutive 211820 ldcC 944887 ldcC Escherichia coli K12 lysine decarboxylase 2, constitutive NP_414728.1 209679 D 83333 CDS NP_414729.4 90111096 944875 211877..212266 1 NC_000913.2 predicted lyase 212266 yaeR 944875 yaeR Escherichia coli K12 predicted lyase NP_414729.4 211877 D 83333 CDS NP_414730.1 16128181 944889 212331..213629 1 NC_000913.2 tRNA(Ile)-lysidine synthetase 213629 tilS 944889 tilS Escherichia coli K12 tRNA(Ile)-lysidine synthetase NP_414730.1 212331 D 83333 CDS NP_414731.2 90111097 944891 complement(213678..213932) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; modulator of Rho-dependent transcription termination 213932 rof 944891 rof Escherichia coli K12 modulator of Rho-dependent transcription termination NP_414731.2 213678 R 83333 CDS YP_026160.1 49176004 1450233 complement(213925..214125) 1 NC_000913.2 conserved hypothetical protein; conserved protein 214125 yaeP 1450233 yaeP Escherichia coli K12 conserved protein YP_026160.1 213925 R 83333 CDS NP_414732.1 16128183 946809 214291..214836 1 NC_000913.2 conserved protein 214836 yaeQ 946809 yaeQ Escherichia coli K12 conserved protein NP_414732.1 214291 D 83333 CDS NP_414733.1 16128184 946046 214833..215255 1 NC_000913.2 conserved protein 215255 yaeJ 946046 yaeJ Escherichia coli K12 conserved protein NP_414733.1 214833 D 83333 CDS NP_414734.1 16128185 946782 215269..215979 1 NC_000913.2 copper homeostasis protein (lipoprotein); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: xenobiotic metabolic process [goid 0006805]; lipoprotein involved with copper homeostasis and adhesion 215979 nlpE 946782 nlpE Escherichia coli K12 lipoprotein involved with copper homeostasis and adhesion NP_414734.1 215269 D 83333 CDS NP_414735.4 90111098 944892 complement(216179..217003) 1 NC_000913.2 predicted lipoprotein 217003 yaeF 944892 yaeF Escherichia coli K12 predicted lipoprotein NP_414735.4 216179 R 83333 CDS NP_414736.1 16128187 949116 complement(217057..218775) 1 NC_000913.2 proline tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; prolyl-tRNA synthetase 218775 proS 949116 proS Escherichia coli K12 prolyl-tRNA synthetase NP_414736.1 217057 R 83333 CDS NP_414737.1 16128188 949112 complement(218887..219594) 1 NC_000913.2 conserved protein 219594 yaeB 949112 yaeB Escherichia coli K12 conserved protein NP_414737.1 218887 R 83333 CDS NP_414738.1 16128189 949113 complement(219591..219995) 1 NC_000913.2 regulator in colanic acid synthesis; interacts with RcsB; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted outer membrane protein, signal 219995 rcsF 949113 rcsF Escherichia coli K12 predicted outer membrane protein, signal NP_414738.1 219591 R 83333 CDS NP_414739.1 16128190 944893 complement(220113..220928) 1 NC_000913.2 D-methionine transport protein (ABC superfamily, peri_bind); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; DL-methionine transporter subunit 220928 metQ 944893 metQ Escherichia coli K12 DL-methionine transporter subunit NP_414739.1 220113 R 83333 CDS NP_414740.1 16128191 944894 complement(220968..221621) 1 NC_000913.2 D- and L-methionine transport protein (ABC superfamily, membrane); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; DL-methionine transporter subunit 221621 metI 944894 metI Escherichia coli K12 DL-methionine transporter subunit NP_414740.1 220968 R 83333 CDS NP_414741.1 16128192 944896 complement(221614..222645) 1 NC_000913.2 D- and L-methionine transport protein (ABC superfamily, atp_bind); GO_component: cytoplasm [goid 0005737]; DL-methionine transporter subunit 222645 metN 944896 metN Escherichia coli K12 DL-methionine transporter subunit NP_414741.1 221614 R 83333 CDS NP_414742.1 16128193 944879 222833..223408 1 NC_000913.2 D,D-heptose 1,7-bisphosphate phosphatase 223408 gmhB 944879 gmhB Escherichia coli K12 D,D-heptose 1,7-bisphosphate phosphatase NP_414742.1 222833 D 83333 CDS NP_414743.1 16128194 944901 229167..229970 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 2,5-diketo-D-gluconate reductase B 229970 dkgB 944901 dkgB Escherichia coli K12 2,5-diketo-D-gluconate reductase B NP_414743.1 229167 D 83333 CDS NP_414744.1 16128195 947507 complement(229967..230881) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 230881 yafC 947507 yafC Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414744.1 229967 R 83333 CDS NP_414745.1 16128196 946286 231122..231922 1 NC_000913.2 conserved protein 231922 yafD 946286 yafD Escherichia coli K12 conserved protein NP_414745.1 231122 D 83333 CDS NP_414746.1 16128197 946197 231926..232549 1 NC_000913.2 putative biotin synthesis protein; GO_process: biotin biosynthetic process [goid 0009102]; predicted S-adenosyl-L-methionine-dependent methyltransferase 232549 yafE 946197 yafE Escherichia coli K12 predicted S-adenosyl-L-methionine-dependent methyltransferase NP_414746.1 231926 D 83333 CDS NP_414747.1 16128198 945694 complement(232597..233955) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: transcription [goid 0006350]; predicted membrane-bound lytic murein transglycosylase D 233955 mltD 945694 mltD Escherichia coli K12 predicted membrane-bound lytic murein transglycosylase D NP_414747.1 232597 R 83333 CDS NP_414748.1 16128199 944902 complement(234027..234782) 1 NC_000913.2 probable hydroxyacylglutathione hydrolase; GO_process: methylglyoxal metabolic process [goid 0009438]; predicted hydroxyacylglutathione hydrolase 234782 gloB 944902 gloB Escherichia coli K12 predicted hydroxyacylglutathione hydrolase NP_414748.1 234027 R 83333 CDS NP_414749.2 90111099 944903 234816..235538 1 NC_000913.2 predicted S-adenosyl-L-methionine-dependent methyltransferase 235538 yafS 944903 yafS Escherichia coli K12 predicted S-adenosyl-L-methionine-dependent methyltransferase NP_414749.2 234816 D 83333 CDS NP_414750.1 16128201 946955 complement(235535..236002) 1 NC_000913.2 RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: proteolysis [goid 0006508]; ribonuclease HI, degrades RNA of DNA-RNA hybrids 236002 rnhA 946955 rnhA Escherichia coli K12 ribonuclease HI, degrades RNA of DNA-RNA hybrids NP_414750.1 235535 R 83333 CDS NP_414751.1 16128202 946441 236067..236798 1 NC_000913.2 DNA polymerase III, epsilon subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: protein folding [goid 0006457]; DNA polymerase III epsilon subunit 236798 dnaQ 946441 dnaQ Escherichia coli K12 DNA polymerase III epsilon subunit NP_414751.1 236067 D 83333 CDS NP_414752.1 16128203 949009 237335..238120 1 NC_000913.2 putative aminopeptidase; predicted aminopeptidase 238120 yafT 949009 yafT Escherichia coli K12 predicted aminopeptidase NP_414752.1 237335 D 83333 CDS YP_001165307.1 145698220 5061498 complement(238257..238736) 1 NC_000913.2 hypothetical protein, no homologs 238736 ykfM 5061498 ykfM Escherichia coli K12 hypothetical protein, no homologs YP_001165307.1 238257 R 83333 CDS b0218 946644 complement(238746..239102) 1 NC_000913.2 pseudogene, predicted inner membrane protein; 239102 yafU 946644 yafU Escherichia coli K12 238746 R 83333 CDS b4503 1450235 239106..239378 1 NC_000913.2 pseudogene, H repeat-associated protein; GO_component: cytoplasm [goid 0005737]; 239378 yafF 1450235 yafF Escherichia coli K12 239106 D 83333 CDS NP_414754.1 16128205 946585 complement(239419..240189) 1 NC_000913.2 putative EC 3.5. amidase-type enzyme; predicted C-N hydrolase family amidase, NAD(P)-binding 240189 yafV 946585 yafV Escherichia coli K12 predicted C-N hydrolase family amidase, NAD(P)-binding NP_414754.1 239419 R 83333 CDS NP_414755.1 16128206 946530 240343..240816 1 NC_000913.2 inhibitor of vertebrate C-type lysozyme, periplasmic; inhibitor of vertebrate C-lysozyme 240816 ivy 946530 ivy Escherichia coli K12 inhibitor of vertebrate C-lysozyme NP_414755.1 240343 D 83333 CDS NP_414756.2 90111100 949007 complement(240859..243303) 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; acyl coenzyme A dehydrogenase 243303 fadE 949007 fadE Escherichia coli K12 acyl coenzyme A dehydrogenase NP_414756.2 240859 R 83333 CDS NP_414757.1 16128208 949134 243543..244121 1 NC_000913.2 phosphoheptose isomerase; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; D-sedoheptulose 7-phosphate isomerase 244121 lpcA 949134 lpcA Escherichia coli K12 D-sedoheptulose 7-phosphate isomerase NP_414757.1 243543 D 83333 CDS NP_414758.1 16128209 944906 244327..245094 1 NC_000913.2 putative amidotransferase; predicted amidotransfease 245094 yafJ 944906 yafJ Escherichia coli K12 predicted amidotransfease NP_414758.1 244327 D 83333 CDS NP_414759.1 16128210 944910 complement(245065..245805) 1 NC_000913.2 conserved protein 245805 yafK 944910 yafK Escherichia coli K12 conserved protein NP_414759.1 245065 R 83333 CDS NP_414760.1 16128211 944911 complement(245961..246239) 1 NC_000913.2 predicted toxin of the YafQ-DinJ toxin-antitoxin system 246239 yafQ 944911 yafQ Escherichia coli K12 predicted toxin of the YafQ-DinJ toxin-antitoxin system NP_414760.1 245961 R 83333 CDS NP_414761.1 16128212 944914 complement(246242..246502) 1 NC_000913.2 damage-inducible protein J; GO_process: DNA repair [goid 0006281]; predicted antitoxin of YafQ-DinJ toxin-antitoxin system 246502 dinJ 944914 dinJ Escherichia coli K12 predicted antitoxin of YafQ-DinJ toxin-antitoxin system NP_414761.1 246242 R 83333 CDS NP_414762.1 16128213 944899 246712..247461 1 NC_000913.2 putative lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted lipoprotein and C40 family peptidase 247461 yafL 944899 yafL Escherichia coli K12 predicted lipoprotein and C40 family peptidase NP_414762.1 246712 D 83333 CDS NP_414763.1 16128214 944913 247637..248134 1 NC_000913.2 conserved protein 248134 yafM 944913 yafM Escherichia coli K12 conserved protein NP_414763.1 247637 D 83333 CDS b0229 944908 complement(248358..250070) 1 NC_000913.2 pseudogene, flagellar system protein, promoterless fragment flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; 250070 lfhA 944908 lfhA Escherichia coli K12 248358 R 83333 CDS b0230 944921 250072..250827 1 NC_000913.2 pseudogene, lateral flagellar motor protein fragment; GO_process: taxis [goid 0042330]; 250827 lafU 944921 lafU Escherichia coli K12 250072 D 83333 CDS NP_414766.1 16128217 944922 250898..251953 1 NC_000913.2 DNA polymerase IV DNA polymerase IV, devoid of proofreading, damage-inducible protein P; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: SOS response [goid 0009432]; DNA polymerase IV 251953 dinB 944922 dinB Escherichia coli K12 DNA polymerase IV NP_414766.1 250898 D 83333 CDS NP_414767.1 16128218 944920 252005..252298 1 NC_000913.2 predicted antitoxin of the YafO-YafN toxin-antitoxin system 252298 yafN 944920 yafN Escherichia coli K12 predicted antitoxin of the YafO-YafN toxin-antitoxin system NP_414767.1 252005 D 83333 CDS NP_414768.1 16128219 944916 252301..252699 1 NC_000913.2 predicted toxin of the YafO-YafN toxin-antitoxin system 252699 yafO 944916 yafO Escherichia coli K12 predicted toxin of the YafO-YafN toxin-antitoxin system NP_414768.1 252301 D 83333 CDS NP_414769.1 16128220 944912 252709..253161 1 NC_000913.2 predicted acyltransferase with acyl-CoA N-acyltransferase domain 253161 yafP 944912 yafP Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_414769.1 252709 D 83333 CDS b0235 944924 253479..253685 1 NC_000913.2 conserved protein; 253685 ykfJ 944924 ykfJ Escherichia coli K12 253479 D 83333 CDS b0236 947374 253702..254202 1 NC_000913.2 pseudogene, predicted peptide chain release factor homolog probable peptide chain release factor; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; 254202 prfH 947374 prfH Escherichia coli K12 253702 D 83333 CDS NP_414772.1 16128223 945013 complement(254259..255716) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; aminoacyl-histidine dipeptidase (peptidase D) 255716 pepD 945013 pepD Escherichia coli K12 aminoacyl-histidine dipeptidase (peptidase D) NP_414772.1 254259 R 83333 CDS NP_414773.1 16128224 944817 255977..256435 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; guanine-hypoxanthine phosphoribosyltransferase 256435 gpt 944817 gpt Escherichia coli K12 guanine-hypoxanthine phosphoribosyltransferase NP_414773.1 255977 D 83333 CDS NP_414774.1 16128225 946039 256527..257771 1 NC_000913.2 hydrolase, binds to enzyme IIA(Glc) 257771 frsA 946039 frsA Escherichia coli K12 hydrolase, binds to enzyme IIA(Glc) NP_414774.1 256527 D 83333 CDS NP_414775.1 16128226 945077 257829..258230 1 NC_000913.2 transcriptional regulator of cryptic csgA gene for curli surface fibers; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator 258230 crl 945077 crl Escherichia coli K12 DNA-binding transcriptional regulator NP_414775.1 257829 D 83333 CDS NP_414776.1 16128227 944926 complement(258269..259324) 1 NC_000913.2 outer membrane pore protein E (E,Ic,NmpAB); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane phosphoporin protein E 259324 phoE 944926 phoE Escherichia coli K12 outer membrane phosphoporin protein E NP_414776.1 258269 R 83333 CDS NP_414777.1 16128228 946425 259612..260715 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: proline biosynthetic process [goid 0006561]; gamma-glutamate kinase 260715 proB 946425 proB Escherichia coli K12 gamma-glutamate kinase NP_414777.1 259612 D 83333 CDS NP_414778.1 16128229 946680 260727..261980 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: proline biosynthetic process [goid 0006561]; gamma-glutamylphosphate reductase 261980 proA 946680 proA Escherichia coli K12 gamma-glutamylphosphate reductase NP_414778.1 260727 D 83333 CDS b4626 5625552 complement(262374..262436) 1 NC_000913.2 pseudogene, YdiA family; 262436 ykfN 5625552 ykfN Escherichia coli K12 262374 R 83333 CDS NP_414779.1 16128230 946726 complement(262552..262893) 1 NC_000913.2 CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system 262893 ykfI 946726 ykfI Escherichia coli K12 CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system NP_414779.1 262552 R 83333 CDS NP_414780.1 16128231 944929 complement(262914..263231) 1 NC_000913.2 CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system 263231 yafW 944929 yafW Escherichia coli K12 CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system NP_414780.1 262914 R 83333 CDS YP_588435.1 94541094 1450236 complement(263250..263471) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 263471 ykfH 1450236 ykfH Escherichia coli K12 predicted protein YP_588435.1 263250 R 83333 CDS NP_414781.1 16128232 944930 complement(263480..263956) 1 NC_000913.2 putative DNA repair protein; CP4-6 prophage; predicted DNA repair protein 263956 ykfG 944930 ykfG Escherichia coli K12 CP4-6 prophage; predicted DNA repair protein NP_414781.1 263480 R 83333 CDS NP_414782.1 16128233 944931 complement(263972..264430) 1 NC_000913.2 CP4-6 prophage; predicted protein 264430 yafX 944931 yafX Escherichia coli K12 CP4-6 prophage; predicted protein NP_414782.1 263972 R 83333 CDS NP_414783.1 16128234 948839 complement(264528..264767) 1 NC_000913.2 CP4-6 prophage; predicted protein 264767 ykfF 948839 ykfF Escherichia coli K12 CP4-6 prophage; predicted protein NP_414783.1 264528 R 83333 CDS NP_414784.1 16128235 946846 complement(264844..265311) 1 NC_000913.2 CP4-6 prophage; predicted protein 265311 ykfB 946846 ykfB Escherichia coli K12 CP4-6 prophage; predicted protein NP_414784.1 264844 R 83333 CDS NP_414785.4 145698221 944934 complement(265334..265777) 1 NC_000913.2 hypothetical transcriptional regulator; CP4-6 prophage; predicted DNA-binding transcriptional regulator 265777 yafY 944934 yafY Escherichia coli K12 CP4-6 prophage; predicted DNA-binding transcriptional regulator NP_414785.4 265334 R 83333 CDS b4627 5625553 complement(265777..265998) 1 NC_000913.2 pseudogene, CP4-6 putative prophage remnant; 265998 ykfL 5625553 ykfL Escherichia coli K12 265777 R 83333 CDS b4628 5625554 complement(266000..266191) 1 NC_000913.2 CP4-6 prophage; predicted DNA-binding transcriptional regulator; 266191 ykfK 5625554 ykfK Escherichia coli K12 266000 R 83333 CDS NP_414786.4 90111102 945373 complement(266408..267229) 1 NC_000913.2 CP4-6 prophage; conserved protein 267229 yafZ 945373 yafZ Escherichia coli K12 CP4-6 prophage; conserved protein NP_414786.4 266408 R 83333 CDS NP_414787.4 90111103 949004 complement(267321..268184) 1 NC_000913.2 putative GTP-binding protein; CP4-6 prophage; predicted GTP-binding protein 268184 ykfA 949004 ykfA Escherichia coli K12 CP4-6 prophage; predicted GTP-binding protein NP_414787.4 267321 R 83333 CDS NP_414788.1 16128239 945417 complement(268513..269406) 1 NC_000913.2 peroxide resistance protein; CP4-6 prophage; predicted DNA-binding transcriptional regulator 269406 perR 945417 perR Escherichia coli K12 CP4-6 prophage; predicted DNA-binding transcriptional regulator NP_414788.1 268513 R 83333 CDS b4587 5061501 join(269502..269759,270988..271413) 1 NC_000913.2 KpLE2 phage-like element; partial regulator of insertion element IS911B;IS, phage, Tn; Transposon-related functions;8.3 extrachromosomal; transposon related; 271413 insN 5061501 insN Escherichia coli K12 269502 D 83333 CDS NP_414790.1 16128241 949005 269827..270978 1 NC_000913.2 KpLE2 phage-like element; IS30 transposase 270978 insI 949005 insI Escherichia coli K12 KpLE2 phage-like element; IS30 transposase NP_414790.1 269827 D 83333 CDS b0258 944940 272071..273178 1 NC_000913.2 CP4-6 prophage; conserved protein; 273178 ykfC 944940 ykfC Escherichia coli K12 272071 D 83333 CDS NP_414793.1 16128244 944941 complement(273325..274341) 1 NC_000913.2 IS5 transposase and trans-activator 274341 insH 944941 insH Escherichia coli K12 IS5 transposase and trans-activator NP_414793.1 273325 R 83333 CDS NP_414794.4 90111105 946284 274549..275952 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: methionine biosynthetic process [goid 0009086]; CP4-6 prophage; predicted S-methylmethionine transporter 275952 mmuP 946284 mmuP Escherichia coli K12 CP4-6 prophage; predicted S-methylmethionine transporter NP_414794.4 274549 D 83333 CDS NP_414795.1 16128246 946143 275939..276871 1 NC_000913.2 GO_process: glycerol metabolic process [goid 0006071]; GO_process: methionine biosynthetic process [goid 0009086]; CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase 276871 mmuM 946143 mmuM Escherichia coli K12 CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase NP_414795.1 275939 D 83333 CDS NP_414796.2 90111106 947676 complement(276980..278026) 1 NC_000913.2 putative ATP-binding component of a transport system; CP4-6 prophage; predicted ferric transporter subunit 278026 afuC 947676 afuC Escherichia coli K12 CP4-6 prophage; predicted ferric transporter subunit NP_414796.2 276980 R 83333 CDS b0263 947073 complement(278038..278385) 1 NC_000913.2 pseudogene, CP4-6 prophage; predicted ferric transporter subunit; 278385 afuB 947073 afuB Escherichia coli K12 278038 R 83333 CDS NP_414798.1 16128249 947698 complement(278402..278905) 1 NC_000913.2 IS1 transposase InsAB' 278905 insB 947698 insB Escherichia coli K12 IS1 transposase InsAB' NP_414798.1 278402 R 83333 CDS NP_414799.1 16128250 944946 complement(278824..279099) 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 279099 insA 944946 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA NP_414799.1 278824 R 83333 CDS YP_588436.1 94541095 1450237 complement(279248..279586) 1 NC_000913.2 predicted IS protein 279586 ykgN 1450237 ykgN Escherichia coli K12 predicted IS protein YP_588436.1 279248 R 83333 CDS NP_414800.2 90111107 944944 complement(279609..279959) 1 NC_000913.2 CP4-6 prophage; conserved protein 279959 yagB 944944 yagB Escherichia coli K12 CP4-6 prophage; conserved protein NP_414800.2 279609 R 83333 CDS NP_414801.1 16128252 944937 complement(280053..281207) 1 NC_000913.2 CP4-6 prophage; predicted DNA-binding transcriptional regulator 281207 yagA 944937 yagA Escherichia coli K12 CP4-6 prophage; predicted DNA-binding transcriptional regulator NP_414801.1 280053 R 83333 CDS NP_414802.1 16128253 944925 281481..282410 1 NC_000913.2 putative lyase/synthase; CP4-6 prophage; predicted lyase/synthase 282410 yagE 944925 yagE Escherichia coli K12 CP4-6 prophage; predicted lyase/synthase NP_414802.1 281481 D 83333 CDS NP_414803.1 16128254 944928 282425..284392 1 NC_000913.2 putative dehydratase; CP4-6 prophage; predicted dehydratase 284392 yagF 944928 yagF Escherichia coli K12 CP4-6 prophage; predicted dehydratase NP_414803.1 282425 D 83333 CDS NP_414804.1 16128255 944947 284619..286001 1 NC_000913.2 putative permease; CP4-6 prophage; predicted sugar transporter 286001 yagG 944947 yagG Escherichia coli K12 CP4-6 prophage; predicted sugar transporter NP_414804.1 284619 D 83333 CDS NP_414805.1 16128256 944949 286013..287623 1 NC_000913.2 putative beta-xylosidase; CP4-6 prophage; predicted xylosidase/arabinosidase 287623 yagH 944949 yagH Escherichia coli K12 CP4-6 prophage; predicted xylosidase/arabinosidase NP_414805.1 286013 D 83333 CDS NP_414806.1 16128257 945016 complement(287628..288386) 1 NC_000913.2 putative regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; CP4-6 prophage; predicted DNA-binding transcriptional regulator 288386 yagI 945016 yagI Escherichia coli K12 CP4-6 prophage; predicted DNA-binding transcriptional regulator NP_414806.1 287628 R 83333 CDS NP_414807.1 16128258 944844 complement(288525..289529) 1 NC_000913.2 ornithine carbamoyltransferase 2, chain F; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; CP4-6 prophage; ornithine carbamoyltransferase 2, chain F 289529 argF 944844 argF Escherichia coli K12 CP4-6 prophage; ornithine carbamoyltransferase 2, chain F NP_414807.1 288525 R 83333 CDS NP_414808.1 16128259 944950 complement(289873..290376) 1 NC_000913.2 IS1 transposase InsAB' 290376 insB 944950 insB Escherichia coli K12 IS1 transposase InsAB' NP_414808.1 289873 R 83333 CDS NP_414809.1 16128260 944951 complement(290295..290570) 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 290570 insA 944951 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA NP_414809.1 290295 R 83333 CDS NP_414810.1 16128261 949094 290724..291455 1 NC_000913.2 CP4-6 prophage; predicted protein 291455 yagJ 949094 yagJ Escherichia coli K12 CP4-6 prophage; predicted protein NP_414810.1 290724 D 83333 CDS NP_414811.1 16128262 945847 complement(291546..292172) 1 NC_000913.2 CP4-6 prophage; conserved protein 292172 yagK 945847 yagK Escherichia coli K12 CP4-6 prophage; conserved protein NP_414811.1 291546 R 83333 CDS NP_414812.1 16128263 945845 complement(292444..293142) 1 NC_000913.2 DNA-binding protein; CP4-6 prophage; DNA-binding protein 293142 yagL 945845 yagL Escherichia coli K12 CP4-6 prophage; DNA-binding protein NP_414812.1 292444 R 83333 CDS NP_414813.1 16128264 944959 complement(293169..294023) 1 NC_000913.2 CP4-6 prophage; predicted protein 294023 yagM 944959 yagM Escherichia coli K12 CP4-6 prophage; predicted protein NP_414813.1 293169 R 83333 CDS NP_414814.1 16128265 945349 complement(294363..294803) 1 NC_000913.2 CP4-6 prophage; predicted protein 294803 yagN 945349 yagN Escherichia coli K12 CP4-6 prophage; predicted protein NP_414814.1 294363 R 83333 CDS NP_414815.1 16128266 947351 complement(294920..296320) 1 NC_000913.2 putative phage integrase; CP4-6 prophage; predicted phage integrase 296320 intF 947351 intF Escherichia coli K12 CP4-6 prophage; predicted phage integrase NP_414815.1 294920 R 83333 CDS NP_414816.1 16128267 947411 complement(296605..297015) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 297015 yagP 947411 yagP Escherichia coli K12 predicted transcriptional regulator NP_414816.1 296605 R 83333 CDS NP_414817.1 16128268 945010 complement(296994..297950) 1 NC_000913.2 conserved protein 297950 yagQ 945010 yagQ Escherichia coli K12 conserved protein NP_414817.1 296994 R 83333 CDS NP_414818.1 16128269 944961 complement(297960..300158) 1 NC_000913.2 predicted oxidoreductase with molybdenum-binding domain 300158 yagR 944961 yagR Escherichia coli K12 predicted oxidoreductase with molybdenum-binding domain NP_414818.1 297960 R 83333 CDS NP_414819.1 16128270 945710 complement(300155..301111) 1 NC_000913.2 predicted oxidoreductase with FAD-binding domain 301111 yagS 945710 yagS Escherichia coli K12 predicted oxidoreductase with FAD-binding domain NP_414819.1 300155 R 83333 CDS NP_414820.1 16128271 945330 complement(301108..301797) 1 NC_000913.2 putative xanthine dehydrogenase; predicted xanthine dehydrogenase, 2Fe-2S subunit 301797 yagT 945330 yagT Escherichia coli K12 predicted xanthine dehydrogenase, 2Fe-2S subunit NP_414820.1 301108 R 83333 CDS NP_414821.1 16128272 945677 302215..302829 1 NC_000913.2 conserved inner membrane protein 302829 yagU 945677 yagU Escherichia coli K12 conserved inner membrane protein NP_414821.1 302215 D 83333 CDS NP_414822.1 16128273 945905 complement(303077..303406) 1 NC_000913.2 putative ferredoxin; GO_function: electron carrier activity [goid 0009055]; predicted ferredoxin 303406 ykgJ 945905 ykgJ Escherichia coli K12 predicted ferredoxin NP_414822.1 303077 R 83333 CDS NP_414823.2 90111108 946631 complement(303719..304429) 1 NC_000913.2 conserved protein 304429 yagV 946631 yagV Escherichia coli K12 conserved protein NP_414823.2 303719 R 83333 CDS NP_414824.1 16128275 947349 complement(304398..306041) 1 NC_000913.2 putative receptor; predicted receptor 306041 yagW 947349 yagW Escherichia coli K12 predicted receptor NP_414824.1 304398 R 83333 CDS NP_414825.1 16128276 947606 complement(306031..308556) 1 NC_000913.2 putative enzyme; predicted aromatic compound dioxygenase 308556 yagX 947606 yagX Escherichia coli K12 predicted aromatic compound dioxygenase NP_414825.1 306031 R 83333 CDS NP_414826.1 16128277 948806 complement(308582..309250) 1 NC_000913.2 predicted protein 309250 matC 948806 matC Escherichia coli K12 predicted protein NP_414826.1 308582 R 83333 CDS NP_414827.1 16128278 948759 complement(309308..309895) 1 NC_000913.2 conserved protein 309895 matB 948759 matB Escherichia coli K12 conserved protein NP_414827.1 309308 R 83333 CDS NP_414828.1 16128279 944966 complement(309970..310560) 1 NC_000913.2 putative regulator; predicted regulator 310560 matA 944966 matA Escherichia coli K12 predicted regulator NP_414828.1 309970 R 83333 CDS NP_414829.1 16128280 944962 311336..311563 1 NC_000913.2 predicted protein 311563 ykgL 944962 ykgL Escherichia coli K12 predicted protein NP_414829.1 311336 D 83333 CDS YP_588437.1 94541137 1450238 complement(311598..311738) 1 NC_000913.2 rpmJ (L36) paralog 311738 ykgO 1450238 ykgO Escherichia coli K12 rpmJ (L36) paralog YP_588437.1 311598 R 83333 CDS NP_414830.1 16128281 944960 complement(311738..312001) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; rpmJ (L36) paralog 312001 ykgM 944960 ykgM Escherichia coli K12 rpmJ (L36) paralog NP_414830.1 311738 R 83333 CDS b4630 5625556 complement(312940..313029) 1 NC_000913.2 pseudogene, oxidoreductase family; 313029 ykgP 5625556 ykgP Escherichia coli K12 312940 R 83333 CDS b0297 944957 313581..314452 1 NC_000913.2 attaching and effacing protein, pathogenesis factor;factor; Not classified; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 314452 eaeH 944957 eaeH Escherichia coli K12 313581 D 83333 CDS NP_414832.1 16128283 944952 314506..314814 1 NC_000913.2 IS3 element protein InsE 314814 insE 944952 insE Escherichia coli K12 IS3 element protein InsE NP_414832.1 314506 D 83333 CDS NP_414833.1 16128284 944948 314811..315677 1 NC_000913.2 IS3 element protein InsF 315677 insF 944948 insF Escherichia coli K12 IS3 element protein InsF NP_414833.1 314811 D 83333 CDS b0300 944956 complement(315710..316393) 1 NC_000913.2 predicted DNA-binding transcriptional regulator;putative regulator; Not classified putative ARAC-type regulatory protein; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; 316393 ykgA 944956 ykgA Escherichia coli K12 315710 R 83333 CDS b4631 5625557 316663..316791 1 NC_000913.2 pseudogene, putative dehydrogenase; 316791 ykgQ 5625557 ykgQ Escherichia coli K12 316663 D 83333 CDS NP_414835.2 90111110 944974 complement(316950..317543) 1 NC_000913.2 conserved inner membrane protein 317543 ykgB 944974 ykgB Escherichia coli K12 conserved inner membrane protein NP_414835.2 316950 R 83333 CDS NP_414837.2 90111111 945658 complement(317555..317791) 1 NC_000913.2 the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene, and has been deaccessioned; predicted protein 317791 ykgI 945658 ykgI Escherichia coli K12 predicted protein NP_414837.2 317555 R 83333 CDS NP_414838.2 90111112 946092 complement(317900..319225) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain 319225 ykgC 946092 ykgC Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain NP_414838.2 317900 R 83333 CDS NP_414839.1 16128290 945616 319451..320305 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 320305 ykgD 945616 ykgD Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414839.1 319451 D 83333 CDS NP_414840.1 16128291 948438 320832..321551 1 NC_000913.2 putative dehydrogenase subunit; predicted oxidoreductase 321551 ykgE 948438 ykgE Escherichia coli K12 predicted oxidoreductase NP_414840.1 320832 D 83333 CDS NP_414841.1 16128292 944980 321562..322989 1 NC_000913.2 predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain 322989 ykgF 944980 ykgF Escherichia coli K12 predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain NP_414841.1 321562 D 83333 CDS NP_414842.4 90111113 945906 322982..323677 1 NC_000913.2 putative transporter; predicted transporter 323677 ykgG 945906 ykgG Escherichia coli K12 predicted transporter NP_414842.4 322982 D 83333 CDS NP_414844.1 16128295 947513 complement(323920..324588) 1 NC_000913.2 predicted inner membrane protein 324588 ykgH 947513 ykgH Escherichia coli K12 predicted inner membrane protein NP_414844.1 323920 R 83333 CDS NP_414845.1 16128296 945716 complement(324801..326471) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: betaine biosynthetic process [goid 0006578]; GO_process: response to osmotic stress [goid 0006970]; choline dehydrogenase, a flavoprotein 326471 betA 945716 betA Escherichia coli K12 choline dehydrogenase, a flavoprotein NP_414845.1 324801 R 83333 CDS NP_414846.1 16128297 947376 complement(326485..327957) 1 NC_000913.2 NAD+-dependent betaine aldehyde dehydrogenase; GO_process: betaine biosynthetic process [goid 0006578]; GO_process: response to osmotic stress [goid 0006970]; betaine aldehyde dehydrogenase, NAD-dependent 327957 betB 947376 betB Escherichia coli K12 betaine aldehyde dehydrogenase, NAD-dependent NP_414846.1 326485 R 83333 CDS NP_414847.3 49176011 944981 complement(327971..328558) 1 NC_000913.2 probably transcriptional repressor of bet genes; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; DNA-binding transcriptional repressor 328558 betI 944981 betI Escherichia coli K12 DNA-binding transcriptional repressor NP_414847.3 327971 R 83333 CDS NP_414848.1 16128299 945079 328687..330720 1 NC_000913.2 high-affinity choline transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: betaine biosynthetic process [goid 0006578]; choline transporter of high affinity 330720 betT 945079 betT Escherichia coli K12 choline transporter of high affinity NP_414848.1 328687 D 83333 CDS NP_414849.1 16128300 947459 331595..332683 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 332683 yahA 947459 yahA Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414849.1 331595 D 83333 CDS NP_414850.1 16128301 945278 complement(332725..333657) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-bindng transcriptional regulator 333657 yahB 945278 yahB Escherichia coli K12 predicted DNA-bindng transcriptional regulator NP_414850.1 332725 R 83333 CDS NP_414851.1 16128302 947337 complement(333749..334246) 1 NC_000913.2 predicted inner membrane protein 334246 yahC 947337 yahC Escherichia coli K12 predicted inner membrane protein NP_414851.1 333749 R 83333 CDS NP_414852.1 16128303 947681 334504..335109 1 NC_000913.2 putative transcription factor; predicted transcriptional regulator with ankyrin domain 335109 yahD 947681 yahD Escherichia coli K12 predicted transcriptional regulator with ankyrin domain NP_414852.1 334504 D 83333 CDS NP_414853.1 16128304 947134 335149..336012 1 NC_000913.2 predicted protein 336012 yahE 947134 yahE Escherichia coli K12 predicted protein NP_414853.1 335149 D 83333 CDS NP_414854.1 16128305 947298 336002..337549 1 NC_000913.2 putative oxidoreductase subunit; predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain 337549 yahF 947298 yahF Escherichia coli K12 predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain NP_414854.1 336002 D 83333 CDS NP_414855.1 16128306 945379 337549..338967 1 NC_000913.2 conserved protein 338967 yahG 945379 yahG Escherichia coli K12 conserved protein NP_414855.1 337549 D 83333 CDS NP_414857.1 16128308 944984 339389..340339 1 NC_000913.2 putative kinase; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; predicted carbamate kinase-like protein 340339 yahI 944984 yahI Escherichia coli K12 predicted carbamate kinase-like protein NP_414857.1 339389 D 83333 CDS NP_414858.1 16128309 944976 340349..341731 1 NC_000913.2 putative deaminase; GO_process: amine catabolic process [goid 0009310]; predicted deaminase with metallo-dependent hydrolase domain 341731 yahJ 944976 yahJ Escherichia coli K12 predicted deaminase with metallo-dependent hydrolase domain NP_414858.1 340349 D 83333 CDS NP_414859.1 16128310 944975 342108..343157 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 343157 yahK 944975 yahK Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_414859.1 342108 D 83333 CDS NP_414860.1 16128311 944970 343400..344215 1 NC_000913.2 predicted protein 344215 yahL 944970 yahL Escherichia coli K12 predicted protein NP_414860.1 343400 D 83333 CDS NP_414861.2 90111114 944969 344628..344873 1 NC_000913.2 predicted protein 344873 yahM 944969 yahM Escherichia coli K12 predicted protein NP_414861.2 344628 D 83333 CDS NP_414862.1 16128313 944968 complement(344890..345561) 1 NC_000913.2 putative cytochrome subunit of dehydrogenase; neutral amino-acid efflux system 345561 yahN 944968 yahN Escherichia coli K12 neutral amino-acid efflux system NP_414862.1 344890 R 83333 CDS NP_414863.1 16128314 944985 345708..345983 1 NC_000913.2 predicted protein 345983 yahO 944985 yahO Escherichia coli K12 predicted protein NP_414863.1 345708 D 83333 CDS NP_414864.1 16128315 944987 complement(346081..347667) 1 NC_000913.2 regulator for prp operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 347667 prpR 944987 prpR Escherichia coli K12 DNA-binding transcriptional activator NP_414864.1 346081 R 83333 CDS NP_414865.1 16128316 944990 347906..348796 1 NC_000913.2 putative phosphonomutase 2; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; 2-methylisocitrate lyase 348796 prpB 944990 prpB Escherichia coli K12 2-methylisocitrate lyase NP_414865.1 347906 D 83333 CDS NP_414867.1 16128318 947528 349236..350405 1 NC_000913.2 putative citrate synthase; propionate metabolism?; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; 2-methylcitrate synthase 350405 prpC 947528 prpC Escherichia coli K12 2-methylcitrate synthase NP_414867.1 349236 D 83333 CDS NP_414868.1 16128319 945931 350439..351890 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; 2-methylcitrate dehydratase 351890 prpD 945931 prpD Escherichia coli K12 2-methylcitrate dehydratase NP_414868.1 350439 D 83333 CDS NP_414869.1 16128320 946891 351930..353816 1 NC_000913.2 putative propionyl-CoA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; predicted propionyl-CoA synthetase with ATPase domain 353816 prpE 946891 prpE Escherichia coli K12 predicted propionyl-CoA synthetase with ATPase domain NP_414869.1 351930 D 83333 CDS NP_414870.1 16128321 944994 354146..355405 1 NC_000913.2 cytosine permease/transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytosine transporter 355405 codB 944994 codB Escherichia coli K12 cytosine transporter NP_414870.1 354146 D 83333 CDS NP_414871.1 16128322 944996 355395..356678 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytosine deaminase 356678 codA 944996 codA Escherichia coli K12 cytosine deaminase NP_414871.1 355395 D 83333 CDS NP_414872.3 157783149 945001 complement(357015..357914) 1 NC_000913.2 cyn operon positive regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual regulator 357914 cynR 945001 cynR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_414872.3 357015 R 83333 CDS NP_414873.1 16128324 946548 358023..358682 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: cyanate catabolic process [goid 0009440]; GO_process: xenobiotic metabolic process [goid 0006805]; carbonic anhydrase 358682 cynT 946548 cynT Escherichia coli K12 carbonic anhydrase NP_414873.1 358023 D 83333 CDS NP_414874.1 16128325 948998 358713..359183 1 NC_000913.2 cyanate aminohydrolase, cyanase; GO_process: cyanate catabolic process [goid 0009440]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: xenobiotic metabolic process [goid 0006805]; cyanate aminohydrolase 359183 cynS 948998 cynS Escherichia coli K12 cyanate aminohydrolase NP_414874.1 358713 D 83333 CDS NP_414875.1 16128326 946770 359216..360370 1 NC_000913.2 cyanate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cyanate catabolic process [goid 0009440]; GO_process: xenobiotic metabolic process [goid 0006805]; predicted cyanate transporter 360370 cynX 946770 cynX Escherichia coli K12 predicted cyanate transporter NP_414875.1 359216 D 83333 CDS NP_414876.1 16128327 945674 complement(360473..361084) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; thiogalactoside acetyltransferase 361084 lacA 945674 lacA Escherichia coli K12 thiogalactoside acetyltransferase NP_414876.1 360473 R 83333 CDS NP_414877.1 16128328 949083 complement(361150..362403) 1 NC_000913.2 galactoside permease (lactose permease, M protein) (MFS family); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; lactose/galactose transporter 362403 lacY 949083 lacY Escherichia coli K12 lactose/galactose transporter NP_414877.1 361150 R 83333 CDS NP_414878.1 16128329 945006 complement(362455..365529) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; beta-D-galactosidase 365529 lacZ 945006 lacZ Escherichia coli K12 beta-D-galactosidase NP_414878.1 362455 R 83333 CDS NP_414879.3 49176012 945007 complement(365652..366734) 1 NC_000913.2 transcriptional repressor of the lac operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 366734 lacI 945007 lacI Escherichia coli K12 DNA-binding transcriptional repressor NP_414879.3 365652 R 83333 CDS NP_414880.2 145698223 945938 complement(366811..367644) 1 NC_000913.2 transcriptional regulator for mhp operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, 3HPP-binding 367644 mhpR 945938 mhpR Escherichia coli K12 DNA-binding transcriptional activator, 3HPP-binding NP_414880.2 366811 R 83333 CDS NP_414881.1 16128332 945197 367835..369499 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; 3-(3-hydroxyphenyl)propionate hydroxylase 369499 mhpA 945197 mhpA Escherichia coli K12 3-(3-hydroxyphenyl)propionate hydroxylase NP_414881.1 367835 D 83333 CDS NP_414882.1 16128333 945047 369501..370445 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; 2,3-dihydroxyphenylpropionate 1,2-dioxygenase 370445 mhpB 945047 mhpB Escherichia coli K12 2,3-dihydroxyphenylpropionate 1,2-dioxygenase NP_414882.1 369501 D 83333 CDS NP_414883.4 90111115 944954 370448..371329 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase 371329 mhpC 944954 mhpC Escherichia coli K12 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase NP_414883.4 370448 D 83333 CDS NP_414884.2 90111116 944768 371339..372148 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; 2-keto-4-pentenoate hydratase 372148 mhpD 944768 mhpD Escherichia coli K12 2-keto-4-pentenoate hydratase NP_414884.2 371339 D 83333 CDS NP_414885.1 16128336 945008 372145..373095 1 NC_000913.2 acetaldehyde dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; acetaldehyde-CoA dehydrogenase II, NAD-binding 373095 mhpF 945008 mhpF Escherichia coli K12 acetaldehyde-CoA dehydrogenase II, NAD-binding NP_414885.1 372145 D 83333 CDS NP_414886.1 16128337 945012 373092..374105 1 NC_000913.2 4-hydroxy-2-ketovalerate aldolase; GO_process: fatty acid oxidation [goid 0019395]; 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I 374105 mhpE 945012 mhpE Escherichia coli K12 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I NP_414886.1 373092 D 83333 CDS NP_414887.2 90111117 944997 374683..375894 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fatty acid oxidation [goid 0019395]; predicted 3-hydroxyphenylpropionic transporter 375894 mhpT 944997 mhpT Escherichia coli K12 predicted 3-hydroxyphenylpropionic transporter NP_414887.2 374683 D 83333 CDS NP_414888.4 90111118 944993 375996..376535 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; nucleoprotein/polynucleotide-associated enzyme 376535 yaiL 944993 yaiL Escherichia coli K12 nucleoprotein/polynucleotide-associated enzyme NP_414888.4 375996 D 83333 CDS NP_414889.1 16128340 944991 complement(376759..377592) 1 NC_000913.2 putative S-formylglutathione hydrolase; predicted esterase 377592 frmB 944991 frmB Escherichia coli K12 predicted esterase NP_414889.1 376759 R 83333 CDS NP_414890.1 16128341 944988 complement(377686..378795) 1 NC_000913.2 alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent; GO_component: cytoplasm [goid 0005737]; GO_process: fermentation [goid 0006113]; alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase 378795 frmA 944988 frmA Escherichia coli K12 alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase NP_414890.1 377686 R 83333 CDS NP_414891.4 162135894 944986 complement(378830..379105) 1 NC_000913.2 repressor of frmRAB; regulator protein that represses frmRAB operon 379105 frmR 944986 frmR Escherichia coli K12 regulator protein that represses frmRAB operon NP_414891.4 378830 R 83333 CDS NP_414892.1 16128343 945014 complement(379293..380066) 1 NC_000913.2 predicted protein 380066 yaiO 945014 yaiO Escherichia coli K12 predicted protein NP_414892.1 379293 R 83333 CDS b4579 4056039 complement(join(380068..380483,381815..382096)) 1 NC_000913.2 predicted protein putative transferase nonfunctional; interruped by IS2; 382096 yaiX 4056039 yaiX Escherichia coli K12 380068 R 83333 CDS NP_414894.2 145698224 945025 380575..380940 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element repressor InsA 380940 insC 945025 insC Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element repressor InsA NP_414894.2 380575 D 83333 CDS NP_414895.1 16128346 945203 380898..381803 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB' 381803 insD 945203 insD Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element transposase InsAB' NP_414895.1 380898 D 83333 CDS NP_414897.1 16128348 945308 complement(381963..383159) 1 NC_000913.2 polysaccharide metabolism; GO_process: polysaccharide biosynthetic process [goid 0000271]; predicted glucosyltransferase 383159 yaiP 945308 yaiP Escherichia coli K12 predicted glucosyltransferase NP_414897.1 381963 R 83333 CDS NP_414898.4 90111121 946967 complement(383283..383840) 1 NC_000913.2 conserved protein 383840 yaiS 946967 yaiS Escherichia coli K12 conserved protein NP_414898.4 383283 R 83333 CDS NP_414899.2 90111122 945030 384456..385418 1 NC_000913.2 taurine transport system periplasmic protein; GO_component: periplasmic space [goid 0042597]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: amine catabolic process [goid 0009310]; taurine transporter subunit 385418 tauA 945030 tauA Escherichia coli K12 taurine transporter subunit NP_414899.2 384456 D 83333 CDS NP_414900.1 16128351 945027 385431..386198 1 NC_000913.2 taurine ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: amine catabolic process [goid 0009310]; taurine transporter subunit 386198 tauB 945027 tauB Escherichia coli K12 taurine transporter subunit NP_414900.1 385431 D 83333 CDS NP_414901.1 16128352 945026 386195..387022 1 NC_000913.2 taurine transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: amine catabolic process [goid 0009310]; taurine transporter subunit 387022 tauC 945026 tauC Escherichia coli K12 taurine transporter subunit NP_414901.1 386195 D 83333 CDS NP_414902.1 16128353 945021 387019..387870 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; GO_process: sulfur metabolic process [goid 0006790]; taurine dioxygenase, 2-oxoglutarate-dependent 387870 tauD 945021 tauD Escherichia coli K12 taurine dioxygenase, 2-oxoglutarate-dependent NP_414902.1 387019 D 83333 CDS NP_414903.4 90111123 945017 complement(387977..388951) 1 NC_000913.2 5-aminolevulinate dehydratase = porphobilinogen synthase; porphobilinogen synthase 388951 hemB 945017 hemB Escherichia coli K12 porphobilinogen synthase NP_414903.4 387977 R 83333 CDS b4580 4056040 join(389475..390932,392191..393642) 1 NC_000913.2 predicted protein;putative structure; Not classified putative flagellin structural protein interrupted by IS3; 393642 yaiT 4056040 yaiT Escherichia coli K12 389475 D 83333 CDS NP_414906.1 16128357 945036 complement(390963..391829) 1 NC_000913.2 IS3 element protein InsF 391829 insF 945036 insF Escherichia coli K12 IS3 element protein InsF NP_414906.1 390963 R 83333 CDS NP_414907.1 16128358 946900 complement(391826..392134) 1 NC_000913.2 IS3 element protein InsE 392134 insE 946900 insE Escherichia coli K12 IS3 element protein InsE NP_414907.1 391826 R 83333 CDS NP_414909.1 16128360 946902 393685..394353 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted DNA-binding transcriptional regulator 394353 yaiV 946902 yaiV Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414909.1 393685 D 83333 CDS NP_414910.1 16128361 946904 complement(394354..395511) 1 NC_000913.2 GO_process: response to drug [goid 0042493]; beta-lactamase/D-alanine carboxypeptidase 395511 ampH 946904 ampH Escherichia coli K12 beta-lactamase/D-alanine carboxypeptidase NP_414910.1 394354 R 83333 CDS NP_414911.1 16128362 946884 395863..397083 1 NC_000913.2 sensitivity to microcin B17, possibly envelop protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted transporter 397083 sbmA 946884 sbmA Escherichia coli K12 predicted transporter NP_414911.1 395863 D 83333 CDS NP_414912.1 16128363 945038 397096..398190 1 NC_000913.2 predicted DNA-binding transcriptional regulator 398190 yaiW 945038 yaiW Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414912.1 397096 D 83333 CDS NP_414913.1 16128364 945223 complement(398249..398557) 1 NC_000913.2 predicted inner membrane protein 398557 yaiY 945223 yaiY Escherichia coli K12 predicted inner membrane protein NP_414913.1 398249 R 83333 CDS NP_414914.2 90111125 947355 398817..399029 1 NC_000913.2 predicted inner membrane protein 399029 yaiZ 947355 yaiZ Escherichia coli K12 predicted inner membrane protein NP_414914.2 398817 D 83333 CDS NP_414915.1 16128366 945313 complement(399053..400147) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; D-alanine-D-alanine ligase A 400147 ddlA 945313 ddlA Escherichia coli K12 D-alanine-D-alanine ligase A NP_414915.1 399053 R 83333 CDS NP_414916.1 16128367 947709 400610..400870 1 NC_000913.2 predicted protein 400870 iraP 947709 iraP Escherichia coli K12 predicted protein NP_414916.1 400610 D 83333 CDS NP_414917.2 49176017 945041 400971..402386 1 NC_000913.2 alkaline phosphatase start codon corrected; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; bacterial alkaline phosphatase 402386 phoA 945041 phoA Escherichia coli K12 bacterial alkaline phosphatase NP_414917.2 400971 D 83333 CDS NP_414918.4 162135895 945040 402505..402825 1 NC_000913.2 induced by phosphate starvation; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; conserved protein 402825 psiF 945040 psiF Escherichia coli K12 conserved protein NP_414918.4 402505 D 83333 CDS NP_414919.1 16128370 945037 402927..404042 1 NC_000913.2 predicted diguanylate cyclase 404042 adrA 945037 adrA Escherichia coli K12 predicted diguanylate cyclase NP_414919.1 402927 D 83333 CDS NP_414920.1 16128371 945034 complement(404059..404868) 1 NC_000913.2 pyrroline-5-carboxylate reductase; GO_component: cytoplasm [goid 0005737]; GO_process: proline biosynthetic process [goid 0006561]; pyrroline-5-carboxylate reductase, NAD(P)-binding 404868 proC 945034 proC Escherichia coli K12 pyrroline-5-carboxylate reductase, NAD(P)-binding NP_414920.1 404059 R 83333 CDS NP_414921.2 90111127 945033 404988..405446 1 NC_000913.2 conserved protein 405446 yaiI 945033 yaiI Escherichia coli K12 conserved protein NP_414921.2 404988 D 83333 CDS NP_414922.1 16128373 945031 405629..406153 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: chorismate biosynthetic process [goid 0009423]; shikimate kinase II 406153 aroL 945031 aroL Escherichia coli K12 shikimate kinase II NP_414922.1 405629 D 83333 CDS NP_414923.1 16128374 945043 406203..406394 1 NC_000913.2 predicted protein 406394 yaiA 945043 yaiA Escherichia coli K12 predicted protein NP_414923.1 406203 D 83333 CDS NP_414924.1 16128375 945045 406652..407329 1 NC_000913.2 protein of aro operon, regulated by aroR; conserved protein 407329 aroM 945045 aroM Escherichia coli K12 conserved protein NP_414924.1 406652 D 83333 CDS NP_414925.1 16128376 945048 407401..407685 1 NC_000913.2 conserved protein 407685 yaiE 945048 yaiE Escherichia coli K12 conserved protein NP_414925.1 407401 D 83333 CDS b0392 945423 407893..408174 1 NC_000913.2 pseudogene; 408174 ykiA 945423 ykiA Escherichia coli K12 407893 D 83333 CDS NP_414927.1 16128378 948585 complement(408332..409243) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA-binding protein, non-specific 409243 rdgC 948585 rdgC Escherichia coli K12 DNA-binding protein, non-specific NP_414927.1 408332 R 83333 CDS NP_414928.2 90111128 949086 409368..410276 1 NC_000913.2 possible NAGC-like transcriptional regulator; GO_process: carbohydrate catabolic process [goid 0016052]; manno(fructo)kinase 410276 mak 949086 mak Escherichia coli K12 manno(fructo)kinase NP_414928.2 409368 D 83333 CDS NP_414930.3 49176018 949077 complement(410521..411705) 1 NC_000913.2 involved in either transport or processing of arabinose polymers; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted transporter 411705 araJ 949077 araJ Escherichia coli K12 predicted transporter NP_414930.3 410521 R 83333 CDS NP_414931.1 16128382 949076 complement(411831..414977) 1 NC_000913.2 ATP-dependent dsDNA exonuclease; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; exonuclease, dsDNA, ATP-dependent 414977 sbcC 949076 sbcC Escherichia coli K12 exonuclease, dsDNA, ATP-dependent NP_414931.1 411831 R 83333 CDS NP_414932.1 16128383 945049 complement(414974..416176) 1 NC_000913.2 ATP-dependent dsDNA exonuclease; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; exonuclease, dsDNA, ATP-dependent 416176 sbcD 945049 sbcD Escherichia coli K12 exonuclease, dsDNA, ATP-dependent NP_414932.1 414974 R 83333 CDS NP_414933.1 16128384 945046 416366..417055 1 NC_000913.2 positive response regulator for pho regulon, sensor is PhoR (or CreC); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) 417055 phoB 945046 phoB Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) NP_414933.1 416366 D 83333 CDS NP_414934.1 16128385 945044 417113..418408 1 NC_000913.2 positive and negative sensor protein for pho regulon; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with PhoB 418408 phoR 945044 phoR Escherichia coli K12 sensory histidine kinase in two-component regulatory system with PhoB NP_414934.1 417113 D 83333 CDS NP_414935.1 16128386 945042 418815..420134 1 NC_000913.2 branched chain amino acid transport system II carrier protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: leucine biosynthetic process [goid 0009098]; GO_process: amino acid catabolic process [goid 0009063]; predicted branched chain amino acid transporter (LIV-II) 420134 brnQ 945042 brnQ Escherichia coli K12 predicted branched chain amino acid transporter (LIV-II) NP_414935.1 418815 D 83333 CDS NP_414936.1 16128387 945050 420210..421583 1 NC_000913.2 proline permease transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: arginine biosynthetic process [goid 0006526]; predicted cryptic proline transporter 421583 proY 945050 proY Escherichia coli K12 predicted cryptic proline transporter NP_414936.1 420210 D 83333 CDS NP_414937.1 16128388 949131 421739..423556 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; maltodextrin glucosidase 423556 malZ 949131 malZ Escherichia coli K12 maltodextrin glucosidase NP_414937.1 421739 D 83333 CDS NP_414938.1 16128389 949132 complement(423561..424142) 1 NC_000913.2 putative glycoprotein; conserved protein 424142 acpH 949132 acpH Escherichia coli K12 conserved protein NP_414938.1 423561 R 83333 CDS NP_414939.1 16128390 944905 424235..425305 1 NC_000913.2 synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 425305 queA 944905 queA Escherichia coli K12 S-adenosylmethionine:tRNA ribosyltransferase-isomerase NP_414939.1 424235 D 83333 CDS NP_414940.1 16128391 949130 425361..426488 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA-guanine transglycosylase 426488 tgt 949130 tgt Escherichia coli K12 tRNA-guanine transglycosylase NP_414940.1 425361 D 83333 CDS NP_414941.1 16128392 945374 426511..426843 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; SecYEG protein translocase auxillary subunit 426843 yajC 945374 yajC Escherichia coli K12 SecYEG protein translocase auxillary subunit NP_414941.1 426511 D 83333 CDS NP_414942.1 16128393 949133 426871..428718 1 NC_000913.2 protein secretion; membrane protein, part of the channel; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; SecYEG protein translocase auxillary subunit 428718 secD 949133 secD Escherichia coli K12 SecYEG protein translocase auxillary subunit NP_414942.1 426871 D 83333 CDS NP_414943.1 16128394 949120 428729..429700 1 NC_000913.2 protein secretion, membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; SecYEG protein translocase auxillary subunit 429700 secF 949120 secF Escherichia coli K12 SecYEG protein translocase auxillary subunit NP_414943.1 428729 D 83333 CDS NP_414944.1 16128395 945051 429829..430176 1 NC_000913.2 conserved protein 430176 yajD 945051 yajD Escherichia coli K12 conserved protein NP_414944.1 429829 D 83333 CDS NP_414945.1 16128396 946242 complement(430353..431237) 1 NC_000913.2 nucleoside channel; receptor of phage T6 and colicin K; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; nucleoside channel, receptor of phage T6 and colicin K 431237 tsx 946242 tsx Escherichia coli K12 nucleoside channel, receptor of phage T6 and colicin K NP_414945.1 430353 R 83333 CDS NP_414946.4 90111129 947233 complement(431536..432075) 1 NC_000913.2 predicted lipoprotein 432075 yajI 947233 yajI Escherichia coli K12 predicted lipoprotein NP_414946.4 431536 R 83333 CDS NP_414947.1 16128398 947437 432226..432675 1 NC_000913.2 conserved protein 432675 nrdR 947437 nrdR Escherichia coli K12 conserved protein NP_414947.1 432226 D 83333 CDS NP_414948.1 16128399 945620 432679..433782 1 NC_000913.2 fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase 433782 ribD 945620 ribD Escherichia coli K12 fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase NP_414948.1 432679 D 83333 CDS NP_414949.1 16128400 946453 433871..434341 1 NC_000913.2 riboflavin synthase, beta chain; riboflavin synthase beta chain 434341 ribE 946453 ribE Escherichia coli K12 riboflavin synthase beta chain NP_414949.1 433871 D 83333 CDS NP_414950.1 16128401 945054 434361..434780 1 NC_000913.2 transcription termination; L factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; transcription antitermination protein 434780 nusB 945054 nusB Escherichia coli K12 transcription antitermination protein NP_414950.1 434361 D 83333 CDS NP_414951.1 16128402 947387 434858..435835 1 NC_000913.2 GO_process: thiamin biosynthetic process [goid 0009228]; thiamin-monophosphate kinase 435835 thiL 947387 thiL Escherichia coli K12 thiamin-monophosphate kinase NP_414951.1 434858 D 83333 CDS NP_414952.1 16128403 947542 435813..436331 1 NC_000913.2 phosphatidylglycerophosphatase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylglycerophosphatase A 436331 pgpA 947542 pgpA Escherichia coli K12 phosphatidylglycerophosphatase A NP_414952.1 435813 D 83333 CDS NP_414953.2 90111130 946903 complement(436385..437359) 1 NC_000913.2 putative NAD(P)H-dependent xylose reductase; 2-carboxybenzaldehyde reductase, function unknown 437359 yajO 946903 yajO Escherichia coli K12 2-carboxybenzaldehyde reductase, function unknown NP_414953.2 436385 R 83333 CDS NP_414954.1 16128405 945060 complement(437539..439401) 1 NC_000913.2 1-deoxyxylulose-5-phosphate synthase; flavoprotein; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: thiamin biosynthetic process [goid 0009228]; 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring 439401 dxs 945060 dxs Escherichia coli K12 1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring NP_414954.1 437539 R 83333 CDS NP_414955.1 16128406 945064 complement(439426..440325) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; geranyltranstransferase 440325 ispA 945064 ispA Escherichia coli K12 geranyltranstransferase NP_414955.1 439426 R 83333 CDS NP_414956.1 16128407 945069 complement(440325..440567) 1 NC_000913.2 exonuclease VII, small subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; exonuclease VII small subunit 440567 xseB 945069 xseB Escherichia coli K12 exonuclease VII small subunit NP_414956.1 440325 R 83333 CDS NP_414957.1 16128408 945067 440773..442221 1 NC_000913.2 GO_process: thiamin biosynthetic process [goid 0009228]; GO_process: RNA modification [goid 0009451]; sulfurtransferase required for thiamine and 4-thiouridine biosynthesis 442221 thiI 945067 thiI Escherichia coli K12 sulfurtransferase required for thiamine and 4-thiouridine biosynthesis NP_414957.1 440773 D 83333 CDS NP_414958.4 90111131 945066 complement(442275..442865) 1 NC_000913.2 GO_process: biotin biosynthetic process [goid 0009102]; conserved protein 442865 yajL 945066 yajL Escherichia coli K12 conserved protein NP_414958.4 442275 R 83333 CDS NP_414959.1 16128410 945065 complement(442828..443739) 1 NC_000913.2 2-dehydropantoate 2-reductase; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; 2-dehydropantoate reductase, NADPH-specific 443739 panE 945065 panE Escherichia coli K12 2-dehydropantoate reductase, NADPH-specific NP_414959.1 442828 R 83333 CDS NP_414960.2 90111132 945063 443907..444398 1 NC_000913.2 predicted nucleotide binding protein 444398 yajQ 945063 yajQ Escherichia coli K12 predicted nucleotide binding protein NP_414960.2 443907 D 83333 CDS NP_414961.4 90111133 945058 complement(444526..445890) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted transporter 445890 yajR 945058 yajR Escherichia coli K12 predicted transporter NP_414961.4 444526 R 83333 CDS NP_414962.1 16128413 945073 complement(446039..446929) 1 NC_000913.2 protoheme IX farnesyltransferase (haeme O biosynthesis); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; protoheme IX farnesyltransferase 446929 cyoE 945073 cyoE Escherichia coli K12 protoheme IX farnesyltransferase NP_414962.1 446039 R 83333 CDS NP_414963.1 16128414 944918 complement(446941..447270) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit IV 447270 cyoD 944918 cyoD Escherichia coli K12 cytochrome o ubiquinol oxidase subunit IV NP_414963.1 446941 R 83333 CDS NP_414964.1 16128415 946897 complement(447270..447884) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit III 447884 cyoC 946897 cyoC Escherichia coli K12 cytochrome o ubiquinol oxidase subunit III NP_414964.1 447270 R 83333 CDS NP_414965.1 16128416 945615 complement(447874..449865) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit I 449865 cyoB 945615 cyoB Escherichia coli K12 cytochrome o ubiquinol oxidase subunit I NP_414965.1 447874 R 83333 CDS NP_414966.1 16128417 945080 complement(449887..450834) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: aerobic respiration [goid 0009060]; cytochrome o ubiquinol oxidase subunit II 450834 cyoA 945080 cyoA Escherichia coli K12 cytochrome o ubiquinol oxidase subunit II NP_414966.1 449887 R 83333 CDS NP_414967.1 16128418 946438 complement(451294..452769) 1 NC_000913.2 regulates beta-lactamase synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan metabolic process [goid 0000270]; muropeptide transporter 452769 ampG 946438 ampG Escherichia coli K12 muropeptide transporter NP_414967.1 451294 R 83333 CDS NP_414968.4 90111134 945521 complement(452813..453391) 1 NC_000913.2 putative polymerase/proteinase; predicted lipoprotein 453391 yajG 945521 yajG Escherichia coli K12 predicted lipoprotein NP_414968.4 452813 R 83333 CDS NP_414969.4 90111135 947043 453696..454013 1 NC_000913.2 possible regulator of murein genes; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: response to osmotic stress [goid 0006970]; regulator of penicillin binding proteins and beta lactamase transcription (morphogene) 454013 bolA 947043 bolA Escherichia coli K12 regulator of penicillin binding proteins and beta lactamase transcription (morphogene) NP_414969.4 453696 D 83333 CDS NP_414970.1 16128421 945081 454357..455655 1 NC_000913.2 trigger factor; a molecular chaperone involved in cell division; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis/trans isomerase (trigger factor) 455655 tig 945081 tig Escherichia coli K12 peptidyl-prolyl cis/trans isomerase (trigger factor) NP_414970.1 454357 D 83333 CDS NP_414971.1 16128422 945082 455901..456524 1 NC_000913.2 ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: response to temperature stimulus [goid 0009266]; proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases 456524 clpP 945082 clpP Escherichia coli K12 proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases NP_414971.1 455901 D 83333 CDS NP_414972.1 16128423 945083 456650..457924 1 NC_000913.2 ATP-dependent specificity component of clpP serine protease, chaperone; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease 457924 clpX 945083 clpX Escherichia coli K12 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease NP_414972.1 456650 D 83333 CDS NP_414973.1 16128424 945085 458112..460466 1 NC_000913.2 DNA-binding, ATP-dependent protease La; heat shock K-protein; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; DNA-binding ATP-dependent protease La 460466 lon 945085 lon Escherichia coli K12 DNA-binding ATP-dependent protease La NP_414973.1 458112 D 83333 CDS NP_414974.1 16128425 949095 460675..460947 1 NC_000913.2 DNA-binding protein HU-beta, NS1 (HU-1); GO_component: cytoplasm [goid 0005737]; HU, DNA-binding transcriptional regulator, beta subunit 460947 hupB 949095 hupB Escherichia coli K12 HU, DNA-binding transcriptional regulator, beta subunit NP_414974.1 460675 D 83333 CDS NP_414975.1 16128426 946056 461139..463010 1 NC_000913.2 GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase (rotamase D) 463010 ppiD 946056 ppiD Escherichia coli K12 peptidyl-prolyl cis-trans isomerase (rotamase D) NP_414975.1 461139 D 83333 CDS NP_414976.1 16128427 945884 463161..463532 1 NC_000913.2 conserved protein 463532 ybaV 945884 ybaV Escherichia coli K12 conserved protein NP_414976.1 463161 D 83333 CDS NP_414977.1 16128428 945812 463626..464024 1 NC_000913.2 conserved protein 464024 ybaW 945812 ybaW Escherichia coli K12 conserved protein NP_414977.1 463626 D 83333 CDS NP_414978.1 16128429 947034 complement(464076..464771) 1 NC_000913.2 GO_process: xenobiotic metabolic process [goid 0006805]; predicted aluminum resistance protein 464771 queC 947034 queC Escherichia coli K12 predicted aluminum resistance protein NP_414978.1 464076 R 83333 CDS NP_414979.1 16128430 949093 complement(464836..466536) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; predicted transporter subunit: periplasmic-binding component of ABC superfamily 466536 ybaE 949093 ybaE Escherichia coli K12 predicted transporter subunit: periplasmic-binding component of ABC superfamily NP_414979.1 464836 R 83333 CDS NP_414980.2 90111136 945089 466636..467454 1 NC_000913.2 thiamin pyrimidine pyrophosphate hydrolase 467454 cof 945089 cof Escherichia coli K12 thiamin pyrimidine pyrophosphate hydrolase NP_414980.2 466636 D 83333 CDS NP_414981.4 90111137 945091 467607..468065 1 NC_000913.2 putative LRP-like transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 468065 ybaO 945091 ybaO Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_414981.4 467607 D 83333 CDS NP_414982.1 16128433 945092 468095..469867 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components 469867 mdlA 945092 mdlA Escherichia coli K12 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components NP_414982.1 468095 D 83333 CDS NP_414983.1 16128434 945088 469860..471641 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components 471641 mdlB 945088 mdlB Escherichia coli K12 fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components NP_414983.1 469860 D 83333 CDS NP_414984.1 16128435 945087 471822..472160 1 NC_000913.2 nitrogen regulatory protein P-II 2; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB 472160 glnK 945087 glnK Escherichia coli K12 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB NP_414984.1 471822 D 83333 CDS NP_414985.1 16128436 945084 472190..473476 1 NC_000913.2 probable ammonium transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; ammonium transporter 473476 amtB 945084 amtB Escherichia coli K12 ammonium transporter NP_414985.1 472190 D 83333 CDS NP_414986.1 16128437 945074 complement(473525..474385) 1 NC_000913.2 acyl-CoA thioesterase II 474385 tesB 945074 tesB Escherichia coli K12 acyl-CoA thioesterase II NP_414986.1 473525 R 83333 CDS NP_414987.3 49176025 945070 474603..475175 1 NC_000913.2 glycoprotein/polysaccharide metabolism; GO_process: lipoprotein biosynthetic process [goid 0042158]; GO_process: glycoprotein biosynthetic process [goid 0009101]; predicted outer membrane lipoprotein 475175 ybaY 945070 ybaY Escherichia coli K12 predicted outer membrane lipoprotein NP_414987.3 474603 D 83333 CDS NP_414988.1 16128439 945094 complement(475206..475595) 1 NC_000913.2 predicted methyltransferase 475595 ybaZ 945094 ybaZ Escherichia coli K12 predicted methyltransferase NP_414988.1 475206 R 83333 CDS NP_414989.1 16128440 948863 475896..476249 1 NC_000913.2 conserved protein 476249 ybaA 948863 ybaA Escherichia coli K12 conserved protein NP_414989.1 475896 D 83333 CDS NP_414990.2 90111138 948951 complement(476291..477841) 1 NC_000913.2 conserved inner membrane protein 477841 ylaB 948951 ylaB Escherichia coli K12 conserved inner membrane protein NP_414990.2 476291 R 83333 CDS NP_414991.4 90111139 948876 complement(478005..478475) 1 NC_000913.2 predicted inner membrane protein 478475 ylaC 948876 ylaC Escherichia coli K12 predicted inner membrane protein NP_414991.4 478005 R 83333 CDS NP_414992.1 16128443 945096 complement(478591..479142) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose O-acetyltransferase 479142 maa 945096 maa Escherichia coli K12 maltose O-acetyltransferase NP_414992.1 478591 R 83333 CDS NP_414993.1 16128444 945098 complement(479314..479532) 1 NC_000913.2 haemolysin expression modulating protein; GO_process: transcription [goid 0006350]; modulator of gene expression, with H-NS 479532 hha 945098 hha Escherichia coli K12 modulator of gene expression, with H-NS NP_414993.1 479314 R 83333 CDS NP_414994.1 16128445 945106 complement(479558..479932) 1 NC_000913.2 predicted protein 479932 ybaJ 945106 ybaJ Escherichia coli K12 predicted protein NP_414994.1 479558 R 83333 CDS NP_414995.1 16128446 945108 complement(480478..483627) 1 NC_000913.2 acridine efflux pump; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 483627 acrB 945108 acrB Escherichia coli K12 multidrug efflux system protein NP_414995.1 480478 R 83333 CDS NP_414996.1 16128447 945112 complement(483650..484843) 1 NC_000913.2 acridine efflux pump; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system 484843 acrA 945112 acrA Escherichia coli K12 multidrug efflux system NP_414996.1 483650 R 83333 CDS NP_414997.1 16128448 945516 484985..485632 1 NC_000913.2 acrAB operon repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor 485632 acrR 945516 acrR Escherichia coli K12 DNA-binding transcriptional repressor NP_414997.1 484985 D 83333 CDS NP_414998.1 16128449 945132 485760..489122 1 NC_000913.2 mechanosensitive channel protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused conserved protein 489122 kefA 945132 kefA Escherichia coli K12 fused conserved protein NP_414998.1 485760 D 83333 CDS NP_414999.1 16128450 945144 complement(489334..489495) 1 NC_000913.2 predicted protein 489495 ybaM 945144 ybaM Escherichia coli K12 predicted protein NP_414999.1 489334 R 83333 CDS NP_415000.1 16128451 945071 complement(489509..490036) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; primosomal replication protein N'' 490036 priC 945071 priC Escherichia coli K12 primosomal replication protein N'' NP_415000.1 489509 R 83333 CDS NP_415001.1 16128452 945558 490106..490483 1 NC_000913.2 putative gene 58; conserved inner membrane protein 490483 ybaN 945558 ybaN Escherichia coli K12 conserved inner membrane protein NP_415001.1 490106 D 83333 CDS NP_415002.1 16128453 945113 490636..491187 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; adenine phosphoribosyltransferase 491187 apt 945113 apt Escherichia coli K12 adenine phosphoribosyltransferase NP_415002.1 490636 D 83333 CDS NP_415003.1 16128454 945105 491316..493247 1 NC_000913.2 DNA polymerase III, tau and gamma subunits; DNA elongation factor III; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III/DNA elongation factor III, tau and gamma subunits 493247 dnaX 945105 dnaX Escherichia coli K12 DNA polymerase III/DNA elongation factor III, tau and gamma subunits NP_415003.1 491316 D 83333 CDS NP_415004.1 16128455 945104 493300..493629 1 NC_000913.2 conserved protein 493629 ybaB 945104 ybaB Escherichia coli K12 conserved protein NP_415004.1 493300 D 83333 CDS NP_415005.1 16128456 945100 493629..494234 1 NC_000913.2 recombination and repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; gap repair protein 494234 recR 945100 recR Escherichia coli K12 gap repair protein NP_415005.1 493629 D 83333 CDS NP_415006.1 16128457 945099 494344..496218 1 NC_000913.2 chaperone Hsp90, heat shock protein C 62.5; GO_process: protein folding [goid 0006457]; molecular chaperone HSP90 family 496218 htpG 945099 htpG Escherichia coli K12 molecular chaperone HSP90 family NP_415006.1 494344 D 83333 CDS NP_415007.1 16128458 945097 496399..497043 1 NC_000913.2 adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; adenylate kinase 497043 adk 945097 adk Escherichia coli K12 adenylate kinase NP_415007.1 496399 D 83333 CDS NP_415008.1 16128459 947532 497279..498241 1 NC_000913.2 ferrochelatase: final enzyme of heme biosynthesis; ferrochelatase 498241 hemH 947532 hemH Escherichia coli K12 ferrochelatase NP_415008.1 497279 D 83333 CDS NP_415009.1 16128460 947514 complement(498238..499197) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; acetyl esterase 499197 aes 947514 aes Escherichia coli K12 acetyl esterase NP_415009.1 498238 R 83333 CDS NP_415010.1 16128461 946584 499349..500653 1 NC_000913.2 inosine-guanosine kinase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; inosine/guanosine kinase 500653 gsk 946584 gsk Escherichia coli K12 inosine/guanosine kinase NP_415010.1 499349 D 83333 CDS NP_415011.1 16128462 946576 complement(500786..502462) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter with NAD(P)-binding Rossmann-fold domain 502462 ybaL 946576 ybaL Escherichia coli K12 predicted transporter with NAD(P)-binding Rossmann-fold domain NP_415011.1 500786 R 83333 CDS NP_415012.1 16128463 945119 complement(502700..503920) 1 NC_000913.2 fosmidomycin resistance protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted fosmidomycin efflux system 503920 fsr 945119 fsr Escherichia coli K12 predicted fosmidomycin efflux system NP_415012.1 502700 R 83333 CDS NP_415013.1 16128464 947331 504138..505790 1 NC_000913.2 UDP-sugar hydrolase (5'-nucleotidase); GO_component: cytoplasm [goid 0005737]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; bifunctional UDP-sugar hydrolase/5'-nucleotidase 505790 ushA 947331 ushA Escherichia coli K12 bifunctional UDP-sugar hydrolase/5'-nucleotidase NP_415013.1 504138 D 83333 CDS NP_415014.1 16128465 947083 complement(505827..506306) 1 NC_000913.2 conserved protein 506306 ybaK 947083 ybaK Escherichia coli K12 conserved protein NP_415014.1 505827 R 83333 CDS NP_415015.1 16128466 945124 complement(506510..507304) 1 NC_000913.2 putative ligase; conserved protein 507304 ybaP 945124 ybaP Escherichia coli K12 conserved protein NP_415015.1 506510 R 83333 CDS NP_415016.4 90111140 948800 507442..507783 1 NC_000913.2 predicted DNA-binding transcriptional regulator 507783 ybaQ 948800 ybaQ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415016.4 507442 D 83333 CDS NP_415017.1 16128468 946106 complement(508099..510603) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; copper transporter 510603 copA 946106 copA Escherichia coli K12 copper transporter NP_415017.1 508099 R 83333 CDS NP_415018.1 16128469 946187 510865..511797 1 NC_000913.2 putative glutaminase; GO_process: amino acid catabolic process [goid 0009063]; predicted glutaminase 511797 ybaS 946187 ybaS Escherichia coli K12 predicted glutaminase NP_415018.1 510865 D 83333 CDS NP_415019.1 16128470 945363 511800..513092 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; predicted transporter 513092 ybaT 945363 ybaT Escherichia coli K12 predicted transporter NP_415019.1 511800 D 83333 CDS NP_415020.1 16128471 945332 513217..513624 1 NC_000913.2 GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of copper-responsive regulon genes 513624 cueR 945332 cueR Escherichia coli K12 DNA-binding transcriptional activator of copper-responsive regulon genes NP_415020.1 513217 D 83333 CDS NP_415021.2 145698226 945126 complement(513625..514083) 1 NC_000913.2 conserved inner membrane protein 514083 ybbJ 945126 ybbJ Escherichia coli K12 conserved inner membrane protein NP_415021.2 513625 R 83333 CDS NP_415022.1 16128473 947257 complement(514080..514997) 1 NC_000913.2 putative protease; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted protease, membrane anchored 514997 qmcA 947257 qmcA Escherichia coli K12 predicted protease, membrane anchored NP_415022.1 514080 R 83333 CDS NP_415023.1 16128474 946990 515143..515820 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 515820 ybbL 946990 ybbL Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_415023.1 515143 D 83333 CDS NP_415024.4 90111141 945137 515807..516586 1 NC_000913.2 putative metal resistance protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted inner membrane protein 516586 ybbM 945137 ybbM Escherichia coli K12 predicted inner membrane protein NP_415024.4 515807 D 83333 CDS NP_415025.4 90111142 947119 complement(516649..517503) 1 NC_000913.2 putative thioredoxin-like protein; predicted thioredoxin domain-containing protein 517503 ybbN 947119 ybbN Escherichia coli K12 predicted thioredoxin domain-containing protein NP_415025.4 516649 R 83333 CDS NP_415026.1 16128477 945337 complement(517564..518373) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 518373 ybbO 945337 ybbO Escherichia coli K12 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_415026.1 517564 R 83333 CDS NP_415027.1 16128478 945127 complement(518363..518989) 1 NC_000913.2 acyl-CoA thioesterase I; also functions as protease I; GO_component: periplasmic space [goid 0042597]; multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 518989 tesA 945127 tesA Escherichia coli K12 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 NP_415027.1 518363 R 83333 CDS NP_415028.1 16128479 945122 518957..519643 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 519643 ybbA 945122 ybbA Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_415028.1 518957 D 83333 CDS NP_415029.1 16128480 945118 519640..522054 1 NC_000913.2 putative oxidoreductase; predicted inner membrane protein 522054 ybbP 945118 ybbP Escherichia coli K12 predicted inner membrane protein NP_415029.1 519640 D 83333 CDS NP_415030.1 16128481 945116 522485..526765 1 NC_000913.2 rhsD protein in rhs element; rhsD element protein 526765 rhsD 945116 rhsD Escherichia coli K12 rhsD element protein NP_415030.1 522485 D 83333 CDS NP_415031.1 16128482 945115 526805..527173 1 NC_000913.2 predicted protein 527173 ybbC 945115 ybbC Escherichia coli K12 predicted protein NP_415031.1 526805 D 83333 CDS b0499 945114 527176..527883 1 NC_000913.2 pseudogene, rhs-like; 527883 ylbH 945114 ylbH Escherichia coli K12 527176 D 83333 CDS b0500 945133 527864..528354 1 NC_000913.2 predicted protein; 528354 ybbD 945133 ybbD Escherichia coli K12 527864 D 83333 CDS b4632 5625558 528721..528816 1 NC_000913.2 pseudogene, Rhs family; 528816 ylbI 5625558 ylbI Escherichia coli K12 528721 D 83333 CDS b0502 946803 complement(join(528819..528884,528884..529240)) 1 NC_000913.2 predicted DNA-binding transcriptional regulator; 529240 ylbG 946803 ylbG Escherichia coli K12 528819 R 83333 CDS NP_415036.1 16128487 947063 complement(529356..530450) 1 NC_000913.2 putative capsule anchoring protein; tRNA 2-selenouridine synthase, selenophosphate-dependent 530450 ybbB 947063 ybbB Escherichia coli K12 tRNA 2-selenouridine synthase, selenophosphate-dependent NP_415036.1 529356 R 83333 CDS NP_415037.1 16128488 945139 complement(530519..531445) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of the allD operon 531445 allS 945139 allS Escherichia coli K12 DNA-binding transcriptional activator of the allD operon NP_415037.1 530519 R 83333 CDS NP_415038.1 16128489 945141 531675..532157 1 NC_000913.2 GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; ureidoglycolate hydrolase 532157 allA 945141 allA Escherichia coli K12 ureidoglycolate hydrolase NP_415038.1 531675 D 83333 CDS NP_415039.1 16128490 945333 532235..533050 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 533050 allR 945333 allR Escherichia coli K12 DNA-binding transcriptional repressor NP_415039.1 532235 D 83333 CDS NP_415040.1 16128491 945394 533140..534921 1 NC_000913.2 GO_process: glycolate metabolic process [goid 0009441]; GO_process: allantoin assimilation pathway [goid 0009442]; glyoxylate carboligase 534921 gcl 945394 gcl Escherichia coli K12 glyoxylate carboligase NP_415040.1 533140 D 83333 CDS NP_415041.1 16128492 946186 534934..535710 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; hydroxypyruvate isomerase 535710 hyi 946186 hyi Escherichia coli K12 hydroxypyruvate isomerase NP_415041.1 534934 D 83333 CDS NP_415042.1 16128493 945146 535810..536688 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; GO_process: allantoin assimilation pathway [goid 0009442]; tartronate semialdehyde reductase, NADH-dependent 536688 glxR 945146 glxR Escherichia coli K12 tartronate semialdehyde reductase, NADH-dependent NP_415042.1 535810 D 83333 CDS NP_415044.4 90111144 945138 536857..538311 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted allantoin transporter 538311 ybbW 945138 ybbW Escherichia coli K12 predicted allantoin transporter NP_415044.4 536857 D 83333 CDS NP_415045.1 16128496 945134 538371..539732 1 NC_000913.2 GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; allantoinase 539732 allB 945134 allB Escherichia coli K12 allantoinase NP_415045.1 538371 D 83333 CDS NP_415046.4 90111145 945131 539789..541090 1 NC_000913.2 predicted uracil/xanthine transporter 541090 ybbY 945131 ybbY Escherichia coli K12 predicted uracil/xanthine transporter NP_415046.4 539789 D 83333 CDS NP_415047.1 16128498 945129 541112..542257 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; GO_process: allantoin assimilation pathway [goid 0009442]; glycerate kinase II 542257 glxK 945129 glxK Escherichia coli K12 glycerate kinase II NP_415047.1 541112 D 83333 CDS NP_415048.1 16128499 945149 complement(542485..543270) 1 NC_000913.2 conserved protein 543270 ylbA 945149 ylbA Escherichia coli K12 conserved protein NP_415048.1 542485 R 83333 CDS NP_415049.1 16128500 945150 complement(543281..544516) 1 NC_000913.2 GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; allantoate amidohydrolase 544516 allC 945150 allC Escherichia coli K12 allantoate amidohydrolase NP_415049.1 543281 R 83333 CDS NP_415050.1 16128501 948342 complement(544538..545587) 1 NC_000913.2 GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: allantoin assimilation pathway [goid 0009442]; ureidoglycolate dehydrogenase 545587 allD 948342 allD Escherichia coli K12 ureidoglycolate dehydrogenase NP_415050.1 544538 R 83333 CDS NP_415051.1 16128502 946298 545904..547571 1 NC_000913.2 involved in protein transport; multicopy suppressor of dominant negative ftsH mutants; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain 547571 fdrA 946298 fdrA Escherichia coli K12 predicted acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain NP_415051.1 545904 D 83333 CDS b4572 4056025 join(547581..547832,547832..548839) 1 NC_000913.2 predicted protein, C-ter fragment (pseudogene); 548839 ylbE 4056025 ylbE Escherichia coli K12 547581 D 83333 CDS NP_415053.1 16128504 945195 548850..549665 1 NC_000913.2 putative carboxylase; conserved protein 549665 ylbF 945195 ylbF Escherichia coli K12 conserved protein NP_415053.1 548850 D 83333 CDS NP_415054.1 16128505 944972 549662..550555 1 NC_000913.2 putative carbamate kinase; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; predicted carbamate kinase 550555 ybcF 944972 ybcF Escherichia coli K12 predicted carbamate kinase NP_415054.1 549662 D 83333 CDS NP_415055.1 16128506 945153 complement(550750..551817) 1 NC_000913.2 phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; N5-carboxyaminoimidazole ribonucleotide synthase 551817 purK 945153 purK Escherichia coli K12 N5-carboxyaminoimidazole ribonucleotide synthase NP_415055.1 550750 R 83333 CDS NP_415056.1 16128507 949031 complement(551814..552323) 1 NC_000913.2 phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; N5-carboxyaminoimidazole ribonucleotide mutase 552323 purE 949031 purE Escherichia coli K12 N5-carboxyaminoimidazole ribonucleotide mutase NP_415056.1 551814 R 83333 CDS NP_415057.1 16128508 949053 complement(552441..553163) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; UDP-2,3-diacylglucosamine pyrophosphatase 553163 lpxH 949053 lpxH Escherichia coli K12 UDP-2,3-diacylglucosamine pyrophosphatase NP_415057.1 552441 R 83333 CDS NP_415058.1 16128509 949038 complement(553166..553660) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase B (rotamase B) 553660 ppiB 949038 ppiB Escherichia coli K12 peptidyl-prolyl cis-trans isomerase B (rotamase B) NP_415058.1 553166 R 83333 CDS NP_415059.1 16128510 946969 553834..555219 1 NC_000913.2 cysteine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; cysteinyl-tRNA synthetase 555219 cysS 946969 cysS Escherichia coli K12 cysteinyl-tRNA synthetase NP_415059.1 553834 D 83333 CDS NP_415060.1 16128511 945155 complement(555255..555776) 1 NC_000913.2 conserved inner membrane protein 555776 ybcI 945155 ybcI Escherichia coli K12 conserved inner membrane protein NP_415060.1 555255 R 83333 CDS NP_415061.2 90111146 945158 complement(555884..556096) 1 NC_000913.2 predicted RNA-binding protein 556096 ybcJ 945158 ybcJ Escherichia coli K12 predicted RNA-binding protein NP_415061.2 555884 R 83333 CDS NP_415062.1 16128513 945221 complement(556098..556964) 1 NC_000913.2 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase; GO_process: folic acid biosynthetic process [goid 0046656]; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 556964 folD 945221 folD Escherichia coli K12 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase NP_415062.1 556098 R 83333 CDS NP_415063.4 90111147 945522 557435..557977 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 557977 sfmA 945522 sfmA Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415063.4 557435 D 83333 CDS NP_415064.1 16128515 945367 558197..558889 1 NC_000913.2 putative chaperone; GO_process: protein folding [goid 0006457]; pilin chaperone, periplasmic 558889 sfmC 945367 sfmC Escherichia coli K12 pilin chaperone, periplasmic NP_415064.1 558197 D 83333 CDS NP_415065.1 16128516 945160 558920..561523 1 NC_000913.2 putative outer membrane protein, export function; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane export usher protein 561523 sfmD 945160 sfmD Escherichia coli K12 predicted outer membrane export usher protein NP_415065.1 558920 D 83333 CDS NP_415066.2 145698227 945407 561559..562542 1 NC_000913.2 involved in fimbrial asembly; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; predicted fimbrial-like adhesin protein 562542 sfmH 945407 sfmH Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415066.2 561559 D 83333 CDS NP_415067.1 16128518 944977 562553..563068 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 563068 sfmF 944977 sfmF Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415067.1 562553 D 83333 CDS NP_415068.1 16128519 947079 complement(563071..563703) 1 NC_000913.2 fimbrial Z protein; probable signal transducer; GO_component: fimbrium [goid 0009289]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 563703 fimZ 947079 fimZ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415068.1 563071 R 83333 CDS NP_415069.1 16128520 947162 complement(564038..565201) 1 NC_000913.2 prophage DLP12 integrase; DLP12 prophage; predicted integrase 565201 intD 947162 intD Escherichia coli K12 DLP12 prophage; predicted integrase NP_415069.1 564038 R 83333 CDS b4633 5625559 complement(565081..565302) 1 NC_000913.2 pseudogene, exisionase in defective prophage DLP12; 565302 xisD 5625559 xisD Escherichia coli K12 565081 R 83333 CDS b0539 947902 complement(565321..565599) 1 NC_000913.2 pseudogene, DLP12 prophage; predicted exonuclease; 565599 ybcC 947902 ybcC Escherichia coli K12 565321 R 83333 CDS b4508 945299 565602..565907 1 NC_000913.2 DLP12 prophage; predicted replication protein fragment (pseudogene); GO_component: cytoplasm [goid 0005737]; 565907 ybcD 945299 ybcD Escherichia coli K12 565602 D 83333 CDS b0542 945024 join(565907..565999,567258..567470) 1 NC_000913.2 DLP12 prophage; predicted protein; 567470 renD 945024 renD Escherichia coli K12 565907 D 83333 CDS NP_415072.1 16128523 945759 566056..566364 1 NC_000913.2 IS3 element protein InsE 566364 insE 945759 insE Escherichia coli K12 IS3 element protein InsE NP_415072.1 566056 D 83333 CDS NP_415073.1 16128524 947988 566361..567227 1 NC_000913.2 IS3 element protein InsF 567227 insF 947988 insF Escherichia coli K12 IS3 element protein InsF NP_415073.1 566361 D 83333 CDS NP_415075.1 16128526 948442 567538..567870 1 NC_000913.2 methylviologen resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; DLP12 prophage; multidrug resistance protein 567870 emrE 948442 emrE Escherichia coli K12 DLP12 prophage; multidrug resistance protein NP_415075.1 567538 D 83333 CDS NP_415076.1 16128527 945166 568125..569651 1 NC_000913.2 DLP12 prophage; predicted recombinase 569651 ybcK 945166 ybcK Escherichia coli K12 DLP12 prophage; predicted recombinase NP_415076.1 568125 D 83333 CDS NP_415077.1 16128528 945165 570116..570667 1 NC_000913.2 DLP12 prophage; predicted kinase inhibitor 570667 ybcL 945165 ybcL Escherichia coli K12 DLP12 prophage; predicted kinase inhibitor NP_415077.1 570116 D 83333 CDS NP_415078.1 16128529 945163 570677..571474 1 NC_000913.2 putative ARAC-type regulatory protein; DLP12 prophage; predicted DNA-binding transcriptional regulator 571474 ybcM 945163 ybcM Escherichia coli K12 DLP12 prophage; predicted DNA-binding transcriptional regulator NP_415078.1 570677 D 83333 CDS YP_001165308.1 145698228 5061504 571591..571692 1 NC_000913.2 hypothetical protein, DLP12 prophage 571692 ylcH 5061504 ylcH Escherichia coli K12 hypothetical protein, DLP12 prophage YP_001165308.1 571591 D 83333 CDS NP_415079.1 16128530 945162 571689..572144 1 NC_000913.2 DLP12 prophage; predicted protein 572144 ybcN 945162 ybcN Escherichia coli K12 DLP12 prophage; predicted protein NP_415079.1 571689 D 83333 CDS NP_415080.1 16128531 945151 572144..572314 1 NC_000913.2 similar to phage 82 and lambda proteins; DLP12 prophage; conserved protein 572314 ninE 945151 ninE Escherichia coli K12 DLP12 prophage; conserved protein NP_415080.1 572144 D 83333 CDS NP_415081.1 16128532 945147 572307..572597 1 NC_000913.2 DLP12 prophage; predicted protein 572597 ybcO 945147 ybcO Escherichia coli K12 DLP12 prophage; predicted protein NP_415081.1 572307 D 83333 CDS NP_415082.1 16128533 945174 572594..572956 1 NC_000913.2 endodeoxyribonuclease RUS (Holliday junction resolvase); GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; DLP12 prophage; endonuclease RUS 572956 rusA 945174 rusA Escherichia coli K12 DLP12 prophage; endonuclease RUS NP_415082.1 572594 D 83333 CDS YP_588439.1 94541097 1450240 572953..573093 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; DLP12 prophage; predicted protein 573093 ylcG 1450240 ylcG Escherichia coli K12 DLP12 prophage; predicted protein YP_588439.1 572953 D 83333 CDS NP_415083.1 16128534 945177 573179..573562 1 NC_000913.2 DLP12 prophage; predicted antitermination protein 573562 ybcQ 945177 ybcQ Escherichia coli K12 DLP12 prophage; predicted antitermination protein NP_415083.1 573179 D 83333 CDS b0553 946786 complement(join(573752..573809,575009..576048)) 1 NC_000913.2 DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage-related functions and prophages outer membrane porin protein; locus of qsr prophage; 576048 nmpC 946786 nmpC Escherichia coli K12 573752 R 83333 CDS NP_415084.1 16128535 946163 complement(573960..574976) 1 NC_000913.2 IS5 transposase and trans-activator 574976 insH 946163 insH Escherichia coli K12 IS5 transposase and trans-activator NP_415084.1 573960 R 83333 CDS NP_415086.1 16128537 947545 576621..576836 1 NC_000913.2 DLP12 prophage; predicted phage lysis protein 576836 essD 947545 essD Escherichia coli K12 DLP12 prophage; predicted phage lysis protein NP_415086.1 576621 D 83333 CDS NP_415087.1 16128538 947539 576836..577333 1 NC_000913.2 bacteriophage lambda lysozyme homolog; DLP12 prophage; predicted lysozyme 577333 ybcS 947539 ybcS Escherichia coli K12 DLP12 prophage; predicted lysozyme NP_415087.1 576836 D 83333 CDS NP_415088.1 16128539 945929 577330..577791 1 NC_000913.2 bacteriophage lambda endopeptidase homolog; DLP12 prophage; predicted murein endopeptidase 577791 rzpD 945929 rzpD Escherichia coli K12 DLP12 prophage; predicted murein endopeptidase NP_415088.1 577330 D 83333 CDS YP_588440.1 94541098 1450242 577550..577732 1 NC_000913.2 GO_component: cell outer membrane [goid 0009279]; DLP12 prophage; predicted lipoprotein 577732 rzoD 1450242 rzoD Escherichia coli K12 DLP12 prophage; predicted lipoprotein YP_588440.1 577550 D 83333 CDS NP_415089.1 16128540 948980 complement(577823..578116) 1 NC_000913.2 bacteriophage lambda Bor protein homolog; DLP12 prophage; predicted lipoprotein 578116 borD 948980 borD Escherichia coli K12 DLP12 prophage; predicted lipoprotein NP_415089.1 577823 R 83333 CDS NP_415090.2 90111149 945178 complement(578407..578817) 1 NC_000913.2 putative an envelop protein; DLP12 prophage; predicted protein 578817 ybcV 945178 ybcV Escherichia coli K12 DLP12 prophage; predicted protein NP_415090.2 578407 R 83333 CDS NP_415091.1 16128542 945175 579103..579309 1 NC_000913.2 DLP12 prophage; predicted protein 579309 ybcW 945175 ybcW Escherichia coli K12 DLP12 prophage; predicted protein NP_415091.1 579103 D 83333 CDS YP_001165309.1 145698229 5061499 complement(579474..579668) 1 NC_000913.2 hypothetical protein 579668 ylcI 5061499 ylcI Escherichia coli K12 hypothetical protein YP_001165309.1 579474 R 83333 CDS NP_415092.1 16128543 945172 580057..580602 1 NC_000913.2 bacteriophage DNA packaging protein; DLP12 prophage; DNA packaging protein 580602 nohB 945172 nohB Escherichia coli K12 DLP12 prophage; DNA packaging protein NP_415092.1 580057 D 83333 CDS b4634 5625560 580577..580885 1 NC_000913.2 DLP12 prophage; predicted tail fiber assembly protein (pseudogene); 580885 ylcF 5625560 ylcF Escherichia coli K12 580577 D 83333 CDS b0561 945171 580883..581320 1 NC_000913.2 pseudogene, DLP12 prophage; predicted tail fiber assembly protein; 581320 tfaD 945171 tfaD Escherichia coli K12 580883 D 83333 CDS b0562 945170 complement(581375..582029) 1 NC_000913.2 DLP12 prophage; predicted SAM-dependent methyltransferase; 582029 ybcY 945170 ybcY Escherichia coli K12 581375 R 83333 CDS b0563 945183 582176..582358 1 NC_000913.2 pseudogene, DLP12 prophage; 582358 tfaX 945183 tfaX Escherichia coli K12 582176 D 83333 CDS NP_415096.1 16128547 948797 582904..583653 1 NC_000913.2 regulatory protein affecting appA and other genes; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to starvation [goid 0042594]; DLP12 prophage; DNA-binding transcriptional activator 583653 appY 948797 appY Escherichia coli K12 DLP12 prophage; DNA-binding transcriptional activator NP_415096.1 582904 D 83333 CDS NP_415097.1 16128548 945185 complement(583903..584856) 1 NC_000913.2 outer membrane protein 3b (a), protease VII; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) 584856 ompT 945185 ompT Escherichia coli K12 DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) NP_415097.1 583903 R 83333 CDS NP_415098.1 16128549 949114 complement(585370..586131) 1 NC_000913.2 envelope protein; thermoregulation of porin biosynthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of porin biosynthesis 586131 envY 949114 envY Escherichia coli K12 DNA-binding transcriptional activator of porin biosynthesis NP_415098.1 585370 R 83333 CDS NP_415099.1 16128550 945186 complement(586314..587204) 1 NC_000913.2 predicted protein 587204 ybcH 945186 ybcH Escherichia coli K12 predicted protein NP_415099.1 586314 R 83333 CDS NP_415100.1 16128551 944741 complement(587205..590177) 1 NC_000913.2 bacteriophage N4 receptor, outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; bacteriophage N4 receptor, outer membrane subunit 590177 nfrA 944741 nfrA Escherichia coli K12 bacteriophage N4 receptor, outer membrane subunit NP_415100.1 587205 R 83333 CDS NP_415101.1 16128552 945849 complement(590164..592401) 1 NC_000913.2 bacteriophage N4 receptor, subunit, inner membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; bacteriophage N4 receptor, inner membrane subunit 592401 nfrB 945849 nfrB Escherichia coli K12 bacteriophage N4 receptor, inner membrane subunit NP_415101.1 590164 R 83333 CDS NP_415102.1 16128553 945978 complement(592551..593993) 1 NC_000913.2 GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with CusR, senses copper ions 593993 cusS 945978 cusS Escherichia coli K12 sensory histidine kinase in two-component regulatory system with CusR, senses copper ions NP_415102.1 592551 R 83333 CDS NP_415103.1 16128554 945003 complement(593983..594666) 1 NC_000913.2 GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with CusS 594666 cusR 945003 cusR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with CusS NP_415103.1 593983 R 83333 CDS NP_415104.1 16128555 946288 594823..596196 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; copper/silver efflux system, outer membrane component 596196 cusC 946288 cusC Escherichia coli K12 copper/silver efflux system, outer membrane component NP_415104.1 594823 D 83333 CDS NP_415105.1 16128556 945188 596354..596686 1 NC_000913.2 periplasmic copper-binding protein 596686 cusF 945188 cusF Escherichia coli K12 periplasmic copper-binding protein NP_415105.1 596354 D 83333 CDS NP_415106.1 16128557 945189 596702..597925 1 NC_000913.2 GO_process: response to drug [goid 0042493]; copper/silver efflux system, membrane fusion protein 597925 cusB 945189 cusB Escherichia coli K12 copper/silver efflux system, membrane fusion protein NP_415106.1 596702 D 83333 CDS NP_415107.1 16128558 945191 597937..601080 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; copper/silver efflux system, membrane component 601080 cusA 945191 cusA Escherichia coli K12 copper/silver efflux system, membrane component NP_415107.1 597937 D 83333 CDS NP_415108.1 16128559 945199 601182..602558 1 NC_000913.2 phenylalanine-specific transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: amino acid catabolic process [goid 0009063]; phenylalanine transporter 602558 pheP 945199 pheP Escherichia coli K12 phenylalanine transporter NP_415108.1 601182 D 83333 CDS NP_415109.1 16128560 946243 complement(602639..603886) 1 NC_000913.2 putative transport; GO_component: periplasmic space [goid 0042597]; predicted mechanosensitive channel 603886 ybdG 946243 ybdG Escherichia coli K12 predicted mechanosensitive channel NP_415109.1 602639 R 83333 CDS NP_415110.1 16128561 945778 complement(603994..604647) 1 NC_000913.2 oxygen-insensitive NAD(P)H nitroreductase; GO_process: response to drug [goid 0042493]; dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive 604647 nfsB 945778 nfsB Escherichia coli K12 dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive NP_415110.1 603994 R 83333 CDS NP_415111.1 16128562 948302 complement(604741..605109) 1 NC_000913.2 conserved protein 605109 ybdF 948302 ybdF Escherichia coli K12 conserved protein NP_415111.1 604741 R 83333 CDS NP_415112.1 16128563 947183 complement(605174..605422) 1 NC_000913.2 predicted inner membrane protein 605422 ybdJ 947183 ybdJ Escherichia coli K12 predicted inner membrane protein NP_415112.1 605174 R 83333 CDS NP_415113.1 16128564 947246 complement(605488..606606) 1 NC_000913.2 gamma-glutamyl:cysteine ligase 606606 ybdK 947246 ybdK Escherichia coli K12 gamma-glutamyl:cysteine ligase NP_415113.1 605488 R 83333 CDS YP_025295.1 49176035 2847715 607059..607211 1 NC_000913.2 small toxic membrane polypeptide the corresponding mokE lacks a start codon, and the regulatory RNA sokE has not been identified; toxic polypeptide, small 607211 hokE 2847715 hokE Escherichia coli K12 toxic polypeptide, small YP_025295.1 607059 D 83333 CDS NP_415114.1 16128565 945200 607288..608400 1 NC_000913.2 IS186/IS421 transposase 608400 insL 945200 insL Escherichia coli K12 IS186/IS421 transposase NP_415114.1 607288 D 83333 CDS NP_415115.1 16128566 945194 complement(608682..609311) 1 NC_000913.2 enterochelin synthetase, component D; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: enterobactin biosynthetic process [goid 0009239]; phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 609311 entD 945194 entD Escherichia coli K12 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex NP_415115.1 608682 R 83333 CDS NP_415116.1 16128567 945193 complement(609477..611717) 1 NC_000913.2 outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin outer membrane transporter 611717 fepA 945193 fepA Escherichia coli K12 iron-enterobactin outer membrane transporter NP_415116.1 609477 R 83333 CDS NP_415117.1 16128568 945181 612038..613162 1 NC_000913.2 enterochelin esterase; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; enterobactin/ferric enterobactin esterase 613162 fes 945181 fes Escherichia coli K12 enterobactin/ferric enterobactin esterase NP_415117.1 612038 D 83333 CDS YP_588441.1 94541099 1450243 613165..613383 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; conserved protein 613383 ybdZ 1450243 ybdZ Escherichia coli K12 conserved protein YP_588441.1 613165 D 83333 CDS NP_415118.1 16128569 945184 613380..617261 1 NC_000913.2 ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F); GO_component: cytoplasm [goid 0005737]; GO_process: enterobactin biosynthetic process [goid 0009239]; GO_process: coenzyme A biosynthetic process [goid 0015937]; GO_process: nonribosomal peptide biosynthetic process [goid 0019184]; GO_process: iron ion transport [goid 0006826]; enterobactin synthase multienzyme complex component, ATP-dependent 617261 entF 945184 entF Escherichia coli K12 enterobactin synthase multienzyme complex component, ATP-dependent NP_415118.1 613380 D 83333 CDS NP_415119.1 16128570 945180 617477..618610 1 NC_000913.2 ferric enterobactin (enterochelin) transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; regulator of length of O-antigen component of lipopolysaccharide chains 618610 fepE 945180 fepE Escherichia coli K12 regulator of length of O-antigen component of lipopolysaccharide chains NP_415119.1 617477 D 83333 CDS NP_415120.1 16128571 945201 complement(618607..619422) 1 NC_000913.2 ATP-binding component of ferric enterobactin transport; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit 619422 fepC 945201 fepC Escherichia coli K12 iron-enterobactin transporter subunit NP_415120.1 618607 R 83333 CDS NP_415121.1 16128572 945209 complement(619419..620411) 1 NC_000913.2 ferric enterobactin transport protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit 620411 fepG 945209 fepG Escherichia coli K12 iron-enterobactin transporter subunit NP_415121.1 619419 R 83333 CDS NP_415122.1 16128573 945214 complement(620408..621412) 1 NC_000913.2 ferric enterobactin (enterochelin) transport; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit 621412 fepD 945214 fepD Escherichia coli K12 iron-enterobactin transporter subunit NP_415122.1 620408 R 83333 CDS NP_415123.1 16128574 946268 621523..622773 1 NC_000913.2 putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 622773 entS 946268 entS Escherichia coli K12 predicted transporter NP_415123.1 621523 D 83333 CDS NP_415124.1 16128575 947538 complement(622777..623733) 1 NC_000913.2 ferric enterobactin (enterochelin) binding protein; periplasmic component; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: iron ion transport [goid 0006826]; iron-enterobactin transporter subunit 623733 fepB 947538 fepB Escherichia coli K12 iron-enterobactin transporter subunit NP_415124.1 622777 R 83333 CDS NP_415125.1 16128576 945511 624108..625283 1 NC_000913.2 isochorismate hydroxymutase 2, enterochelin biosynthesis; GO_process: enterobactin biosynthetic process [goid 0009239]; isochorismate synthase 1 625283 entC 945511 entC Escherichia coli K12 isochorismate synthase 1 NP_415125.1 624108 D 83333 CDS NP_415126.1 16128577 947426 625293..626903 1 NC_000913.2 2,3-dihydroxybenzoate-AMP ligase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: enterobactin biosynthetic process [goid 0009239]; GO_process: nonribosomal peptide biosynthetic process [goid 0019184]; 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex 626903 entE 947426 entE Escherichia coli K12 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex NP_415126.1 625293 D 83333 CDS NP_415127.1 16128578 946178 626917..627774 1 NC_000913.2 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; GO_component: cytoplasm [goid 0005737]; GO_process: enterobactin biosynthetic process [goid 0009239]; GO_process: nonribosomal peptide biosynthetic process [goid 0019184]; isochorismatase 627774 entB 946178 entB Escherichia coli K12 isochorismatase NP_415127.1 626917 D 83333 CDS NP_415128.1 16128579 945284 627774..628520 1 NC_000913.2 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis; GO_process: enterobactin biosynthetic process [goid 0009239]; 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 628520 entA 945284 entA Escherichia coli K12 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase NP_415128.1 627774 D 83333 CDS NP_415129.1 16128580 945215 628523..628936 1 NC_000913.2 conserved protein 628936 ybdB 945215 ybdB Escherichia coli K12 conserved protein NP_415129.1 628523 D 83333 CDS NP_415130.1 16128581 945213 629117..631222 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to starvation [goid 0042594]; carbon starvation protein 631222 cstA 945213 cstA Escherichia coli K12 carbon starvation protein NP_415130.1 629117 D 83333 CDS YP_588442.1 94541100 949021 631405..631602 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; conserved protein 631602 ybdD 949021 ybdD Escherichia coli K12 conserved protein YP_588442.1 631405 D 83333 CDS NP_415132.1 16128582 945212 complement(631612..632700) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase 632700 ybdH 945212 ybdH Escherichia coli K12 predicted oxidoreductase NP_415132.1 631612 R 83333 CDS NP_415133.1 16128583 945211 632809..633969 1 NC_000913.2 PLP-dependent methionine aminotransferase; GO_process: metabolic process [goid 0008152]; methionine aminotransferase, PLP-dependent 633969 ybdL 945211 ybdL Escherichia coli K12 methionine aminotransferase, PLP-dependent NP_415133.1 632809 D 83333 CDS NP_415134.1 16128584 945206 complement(633970..634599) 1 NC_000913.2 conserved protein 634599 ybdM 945206 ybdM Escherichia coli K12 conserved protein NP_415134.1 633970 R 83333 CDS NP_415135.1 16128585 945205 complement(634572..635792) 1 NC_000913.2 conserved protein 635792 ybdN 945205 ybdN Escherichia coli K12 conserved protein NP_415135.1 634572 R 83333 CDS NP_415136.1 16128586 945216 complement(635939..636841) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 636841 ybdO 945216 ybdO Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415136.1 635939 R 83333 CDS NP_415137.2 90111151 945224 complement(637050..637796) 1 NC_000913.2 thiol:disulfide interchange protein; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; periplasmic disulfide isomerase/thiol-disulphide oxidase 637796 dsbG 945224 dsbG Escherichia coli K12 periplasmic disulfide isomerase/thiol-disulphide oxidase NP_415137.2 637050 R 83333 CDS NP_415138.1 16128588 945225 638168..638731 1 NC_000913.2 alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides; GO_process: xenobiotic metabolic process [goid 0006805]; alkyl hydroperoxide reductase, C22 subunit 638731 ahpC 945225 ahpC Escherichia coli K12 alkyl hydroperoxide reductase, C22 subunit NP_415138.1 638168 D 83333 CDS NP_415139.2 90111152 947540 638976..640541 1 NC_000913.2 alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides; GO_process: xenobiotic metabolic process [goid 0006805]; alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding 640541 ahpF 947540 ahpF Escherichia coli K12 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding NP_415139.2 638976 D 83333 CDS NP_415140.1 16128590 945229 complement(640662..641090) 1 NC_000913.2 universal stress protein UP12 641090 uspG 945229 uspG Escherichia coli K12 universal stress protein UP12 NP_415140.1 640662 R 83333 CDS NP_415141.1 16128591 949067 641311..642549 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 642549 ybdR 949067 ybdR Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_415141.1 641311 D 83333 CDS NP_415143.1 16128593 947546 complement(642780..643190) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; regulator of nucleoside diphosphate kinase 643190 rnk 947546 rnk Escherichia coli K12 regulator of nucleoside diphosphate kinase NP_415143.1 642780 R 83333 CDS NP_415144.1 16128594 949065 complement(643420..644226) 1 NC_000913.2 RNase I, cleaves phosphodiester bond between any two nucleotides; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; ribonuclease I 644226 rna 949065 rna Escherichia coli K12 ribonuclease I NP_415144.1 643420 R 83333 CDS NP_415145.1 16128595 949070 complement(644340..645803) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; citrate:succinate antiporter 645803 citT 949070 citT Escherichia coli K12 citrate:succinate antiporter NP_415145.1 644340 R 83333 CDS NP_415146.1 16128596 946395 complement(645854..646732) 1 NC_000913.2 GO_process: translation [goid 0006412]; triphosphoribosyl-dephospho-CoA transferase 646732 citG 946395 citG Escherichia coli K12 triphosphoribosyl-dephospho-CoA transferase NP_415146.1 645854 R 83333 CDS NP_415147.1 16128597 949084 complement(646707..647258) 1 NC_000913.2 GO_process: protein modification [goid 0006464]; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 647258 citX 949084 citX Escherichia coli K12 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase NP_415147.1 646707 R 83333 CDS NP_415148.1 16128598 945230 complement(647262..648794) 1 NC_000913.2 citrate lyase alpha chain; GO_component: cytoplasm [goid 0005737]; citrate lyase, citrate-ACP transferase (alpha) subunit 648794 citF 945230 citF Escherichia coli K12 citrate lyase, citrate-ACP transferase (alpha) subunit NP_415148.1 647262 R 83333 CDS NP_415149.4 90111153 945406 complement(648805..649713) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; citrate lyase, citryl-ACP lyase (beta) subunit 649713 citE 945406 citE Escherichia coli K12 citrate lyase, citryl-ACP lyase (beta) subunit NP_415149.4 648805 R 83333 CDS NP_415150.1 16128600 945415 complement(649710..650006) 1 NC_000913.2 citrate lyase acyl carrier protein (gamma chain); GO_component: cytoplasm [goid 0005737]; GO_process: acyl-carrier-protein biosynthetic process [goid 0042967]; citrate lyase, acyl carrier (gamma) subunit 650006 citD 945415 citD Escherichia coli K12 citrate lyase, acyl carrier (gamma) subunit NP_415150.1 649710 R 83333 CDS NP_415151.4 90111154 945231 complement(650021..651079) 1 NC_000913.2 citrate lyase synthetase (citrate (pro-3S)-lyase ligase; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; citrate lyase synthetase 651079 citC 945231 citC Escherichia coli K12 citrate lyase synthetase NP_415151.4 650021 R 83333 CDS NP_415152.1 16128602 945233 651458..653116 1 NC_000913.2 putative sensor-type protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with citB 653116 dpiB 945233 dpiB Escherichia coli K12 sensory histidine kinase in two-component regulatory system with citB NP_415152.1 651458 D 83333 CDS NP_415153.1 16128603 947008 653085..653765 1 NC_000913.2 sequence similarity to Shigella regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with citA 653765 dpiA 947008 dpiA Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with citA NP_415153.1 653085 D 83333 CDS NP_415154.1 16128604 945000 complement(653806..655191) 1 NC_000913.2 transport of dicarboxylates; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; anaerobic C4-dicarboxylate transport 655191 dcuC 945000 dcuC Escherichia coli K12 anaerobic C4-dicarboxylate transport NP_415154.1 653806 R 83333 CDS NP_415155.1 16128605 946360 655780..656340 1 NC_000913.2 palmitoyl transferase for Lipid A 656340 pagP 946360 pagP Escherichia coli K12 palmitoyl transferase for Lipid A NP_415155.1 655780 D 83333 CDS NP_415156.1 16128606 947024 656515..656724 1 NC_000913.2 cold shock protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; DNA-binding transcriptional repressor 656724 cspE 947024 cspE Escherichia coli K12 DNA-binding transcriptional repressor NP_415156.1 656515 D 83333 CDS NP_415157.1 16128607 945798 complement(656778..657161) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein associated with chromosome condensation 657161 crcB 945798 crcB Escherichia coli K12 predicted inner membrane protein associated with chromosome condensation NP_415157.1 656778 R 83333 CDS b4581 4056041 join(657254..657448,657448..658041) 1 NC_000913.2 predicted C-N hydrolase superfamily, NAD(P)-binding amidase/nitrilase;putative enzyme; Not classified putative amidase; 658041 ybeM 4056041 ybeM Escherichia coli K12 657254 D 83333 CDS NP_415160.1 16128610 945228 658170..658373 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; TatABCE protein translocation system subunit 658373 tatE 945228 tatE Escherichia coli K12 TatABCE protein translocation system subunit NP_415160.1 658170 D 83333 CDS NP_415161.1 16128611 945227 complement(658474..659439) 1 NC_000913.2 lipoate synthesis, sulfur insertion?; GO_component: cytoplasm [goid 0005737]; GO_process: lipoate biosynthetic process [goid 0009107]; lipoate synthase 659439 lipA 945227 lipA Escherichia coli K12 lipoate synthase NP_415161.1 658474 R 83333 CDS NP_415162.4 90111155 945219 complement(659648..660601) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 660601 ybeF 945219 ybeF Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415162.4 659648 R 83333 CDS NP_415163.2 90111156 945217 complement(660860..661501) 1 NC_000913.2 protein of lipoate biosynthesis; GO_process: lipoate biosynthetic process [goid 0009107]; lipoyl-protein ligase 661501 lipB 945217 lipB Escherichia coli K12 lipoyl-protein ligase NP_415163.2 660860 R 83333 CDS NP_415164.1 16128614 945220 complement(661602..661865) 1 NC_000913.2 conserved protein 661865 ybeD 945220 ybeD Escherichia coli K12 conserved protein NP_415164.1 661602 R 83333 CDS NP_415165.1 16128615 945222 complement(661975..663186) 1 NC_000913.2 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 663186 dacA 945222 dacA Escherichia coli K12 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) NP_415165.1 661975 R 83333 CDS NP_415166.1 16128616 945241 complement(663325..664413) 1 NC_000913.2 a minor lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; minor lipoprotein 664413 rlpA 945241 rlpA Escherichia coli K12 minor lipoprotein NP_415166.1 663325 R 83333 CDS NP_415167.1 16128617 945238 complement(664424..665536) 1 NC_000913.2 rod shape-determining membrane protein; sensitivity to radiation and drugs; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cell wall shape-determining protein 665536 mrdB 945238 mrdB Escherichia coli K12 cell wall shape-determining protein NP_415167.1 664424 R 83333 CDS NP_415168.1 16128618 945240 complement(665539..667440) 1 NC_000913.2 cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) 667440 mrdA 945240 mrdA Escherichia coli K12 transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2) NP_415168.1 665539 R 83333 CDS NP_415169.1 16128619 945239 complement(667471..667938) 1 NC_000913.2 conserved protein 667938 ybeA 945239 ybeA Escherichia coli K12 conserved protein NP_415169.1 667471 R 83333 CDS NP_415170.4 90111157 945237 complement(667942..668259) 1 NC_000913.2 predicted protein 668259 ybeB 945237 ybeB Escherichia coli K12 predicted protein NP_415170.4 667942 R 83333 CDS NP_415171.1 16128621 945246 complement(668519..669130) 1 NC_000913.2 homolog of Salmonella cobC, a phosphohistidine protein; predicted alpha-ribazole-5'-P phosphatase 669130 cobC 945246 cobC Escherichia coli K12 predicted alpha-ribazole-5'-P phosphatase NP_415171.1 668519 R 83333 CDS NP_415172.1 16128622 945248 complement(669154..669795) 1 NC_000913.2 GO_process: NAD biosynthetic process [goid 0009435]; nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent 669795 nadD 945248 nadD Escherichia coli K12 nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent NP_415172.1 669154 R 83333 CDS NP_415173.1 16128623 947573 complement(669797..670828) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, delta subunit 670828 holA 947573 holA Escherichia coli K12 DNA polymerase III, delta subunit NP_415173.1 669797 R 83333 CDS NP_415174.1 16128624 946257 complement(670828..671409) 1 NC_000913.2 a minor lipoprotein; GO_component: organelle inner membrane [goid 0019866]; GO_process: lipoprotein biosynthetic process [goid 0042158]; minor lipoprotein 671409 rlpB 946257 rlpB Escherichia coli K12 minor lipoprotein NP_415174.1 670828 R 83333 CDS NP_415175.1 16128625 947497 complement(671424..674006) 1 NC_000913.2 leucine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; leucyl-tRNA synthetase 674006 leuS 947497 leuS Escherichia coli K12 leucyl-tRNA synthetase NP_415175.1 671424 R 83333 CDS NP_415176.1 16128626 945252 674241..674723 1 NC_000913.2 putative alpha helical protein; conserved protein 674723 ybeL 945252 ybeL Escherichia coli K12 conserved protein NP_415176.1 674241 D 83333 CDS NP_415177.4 90111158 945251 complement(674793..675770) 1 NC_000913.2 conserved protein 675770 ybeQ 945251 ybeQ Escherichia coli K12 conserved protein NP_415177.4 674793 R 83333 CDS NP_415178.1 16128628 945249 675934..676641 1 NC_000913.2 predicted protein 676641 ybeR 945249 ybeR Escherichia coli K12 predicted protein NP_415178.1 675934 D 83333 CDS NP_415179.1 16128629 945245 676638..678065 1 NC_000913.2 putative enzyme of polynucleotide modification; GO_process: protein folding [goid 0006457]; predicted chaperone 678065 djlB 945245 djlB Escherichia coli K12 predicted chaperone NP_415179.1 676638 D 83333 CDS NP_415180.1 16128630 945243 complement(678075..678629) 1 NC_000913.2 conserved outer membrane protein 678629 ybeT 945243 ybeT Escherichia coli K12 conserved outer membrane protein NP_415180.1 678075 R 83333 CDS NP_415181.1 16128631 945244 678731..679438 1 NC_000913.2 putative tRNA ligase; predicted tRNA ligase 679438 ybeU 945244 ybeU Escherichia coli K12 predicted tRNA ligase NP_415181.1 678731 D 83333 CDS NP_415182.1 16128632 945253 679435..680886 1 NC_000913.2 Hsc56 co-chaperone of HscC 680886 djlC 945253 djlC Escherichia coli K12 Hsc56 co-chaperone of HscC NP_415182.1 679435 D 83333 CDS NP_415183.1 16128633 945218 complement(680946..682616) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription 682616 hscC 945218 hscC Escherichia coli K12 Hsp70 family chaperone Hsc62, binds to RpoD and inhibits transcription NP_415183.1 680946 R 83333 CDS NP_415184.1 16128634 945503 complement(682700..683635) 1 NC_000913.2 GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; ribonucleoside hydrolase 1 683635 rihA 945503 rihA Escherichia coli K12 ribonucleoside hydrolase 1 NP_415184.1 682700 R 83333 CDS NP_415185.1 16128635 945254 complement(683753..684478) 1 NC_000913.2 ATP-binding protein of glutamate/aspartate transport system; GO_component: cytoplasm [goid 0005737]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate and aspartate transporter subunit 684478 gltL 945254 gltL Escherichia coli K12 glutamate and aspartate transporter subunit NP_415185.1 683753 R 83333 CDS NP_415186.1 16128636 947354 complement(684478..685152) 1 NC_000913.2 glutamate/aspartate transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate and aspartate transporter subunit 685152 gltK 947354 gltK Escherichia coli K12 glutamate and aspartate transporter subunit NP_415186.1 684478 R 83333 CDS NP_415187.1 16128637 945443 complement(685152..685892) 1 NC_000913.2 glutamate/aspartate transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate and aspartate transporter subunit 685892 gltJ 945443 gltJ Escherichia coli K12 glutamate and aspartate transporter subunit NP_415187.1 685152 R 83333 CDS NP_415188.1 16128638 946938 complement(686062..686970) 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: glutamate biosynthetic process [goid 0006537]; glutamate and aspartate transporter subunit 686970 gltI 946938 gltI Escherichia coli K12 glutamate and aspartate transporter subunit NP_415188.1 686062 R 83333 CDS NP_415189.1 16128639 944917 complement(687220..688236) 1 NC_000913.2 IS5 transposase and trans-activator 688236 insH 944917 insH Escherichia coli K12 IS5 transposase and trans-activator NP_415189.1 687220 R 83333 CDS NP_415190.1 16128640 946201 complement(688566..690104) 1 NC_000913.2 apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lipoprotein biosynthetic process [goid 0042158]; apolipoprotein N-acyltransferase 690104 lnt 946201 lnt Escherichia coli K12 apolipoprotein N-acyltransferase NP_415190.1 688566 R 83333 CDS NP_415191.1 16128641 946417 complement(690129..691007) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicteed ion transport 691007 ybeX 946417 ybeX Escherichia coli K12 predicteed ion transport NP_415191.1 690129 R 83333 CDS NP_415192.1 16128642 946430 complement(691097..691564) 1 NC_000913.2 conserved protein 691564 ybeY 946430 ybeY Escherichia coli K12 conserved protein NP_415192.1 691097 R 83333 CDS NP_415193.2 145698230 948044 complement(691561..692601) 1 NC_000913.2 putative ATP-binding protein in pho regulon; predicted protein with nucleoside triphosphate hydrolase domain 692601 ybeZ 948044 ybeZ Escherichia coli K12 predicted protein with nucleoside triphosphate hydrolase domain NP_415193.2 691561 R 83333 CDS NP_415194.1 16128644 945260 complement(692754..694178) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; isopentenyl-adenosine A37 tRNA methylthiolase 694178 miaB 945260 miaB Escherichia coli K12 isopentenyl-adenosine A37 tRNA methylthiolase NP_415194.1 692754 R 83333 CDS NP_415195.1 16128645 945261 694324..695499 1 NC_000913.2 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase 695499 ubiF 945261 ubiF Escherichia coli K12 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase NP_415195.1 694324 D 83333 CDS NP_415200.1 16128650 945281 complement(696736..698400) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: asparagine biosynthetic process [goid 0006529]; asparagine synthetase B 698400 asnB 945281 asnB Escherichia coli K12 asparagine synthetase B NP_415200.1 696736 R 83333 CDS NP_415201.1 16128651 945283 complement(698797..699549) 1 NC_000913.2 N-acetylglucosamine metabolism; GO_process: amino sugar biosynthetic process [goid 0046349]; UMP phosphatase 699549 nagD 945283 nagD Escherichia coli K12 UMP phosphatase NP_415201.1 698797 R 83333 CDS NP_415202.1 16128652 945285 complement(699597..700817) 1 NC_000913.2 transcriptional repressor of nag (N-acetylglucosamine) operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino sugar biosynthetic process [goid 0046349]; GO_process: transcription [goid 0006350]; GO_process: translational attenuation [goid 0009386]; DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine 700817 nagC 945285 nagC Escherichia coli K12 DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine NP_415202.1 699597 R 83333 CDS NP_415203.1 16128653 945289 complement(700826..701974) 1 NC_000913.2 GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylglucosamine-6-phosphate deacetylase 701974 nagA 945289 nagA Escherichia coli K12 N-acetylglucosamine-6-phosphate deacetylase NP_415203.1 700826 R 83333 CDS NP_415204.1 16128654 945290 complement(702034..702834) 1 NC_000913.2 GO_process: amino sugar biosynthetic process [goid 0046349]; glucosamine-6-phosphate deaminase 702834 nagB 945290 nagB Escherichia coli K12 glucosamine-6-phosphate deaminase NP_415204.1 702034 R 83333 CDS NP_415205.1 16128655 945292 703167..705113 1 NC_000913.2 PTS system, N-acetylglucosamine-specific enzyme IIABC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amine catabolic process [goid 0009310]; GO_process: amino sugar biosynthetic process [goid 0046349]; fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components 705113 nagE 945292 nagE Escherichia coli K12 fused N-acetyl glucosamine specific PTS enzyme: IIC, IIB , and IIA components NP_415205.1 703167 D 83333 CDS NP_415206.1 16128656 945310 705316..706980 1 NC_000913.2 glutamine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glutamyl-tRNA synthetase 706980 glnS 945310 glnS Escherichia coli K12 glutamyl-tRNA synthetase NP_415206.1 705316 D 83333 CDS NP_415207.1 16128657 945296 707557..708963 1 NC_000913.2 predicted outer membrane porin 708963 ybfM 945296 ybfM Escherichia coli K12 predicted outer membrane porin NP_415207.1 707557 D 83333 CDS NP_415208.1 16128658 945713 709013..709339 1 NC_000913.2 predicted lipoprotein 709339 ybfN 945713 ybfN Escherichia coli K12 predicted lipoprotein NP_415208.1 709013 D 83333 CDS NP_415209.1 16128659 945295 complement(709423..709869) 1 NC_000913.2 negative regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport 709869 fur 945295 fur Escherichia coli K12 DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport NP_415209.1 709423 R 83333 CDS YP_001491546.1 157783150 5625562 complement(709862..709948) 1 NC_000913.2 ryhB-regulated fur leader peptide 709948 uof 5625562 uof Escherichia coli K12 ryhB-regulated fur leader peptide YP_001491546.1 709862 R 83333 CDS NP_415210.1 16128660 945293 complement(710158..710688) 1 NC_000913.2 GO_function: electron donor activity [goid 0009053]; flavodoxin 1 710688 fldA 945293 fldA Escherichia coli K12 flavodoxin 1 NP_415210.1 710158 R 83333 CDS NP_415211.2 90111159 945291 complement(710828..711121) 1 NC_000913.2 GO_process: SOS response [goid 0009432]; lexA-regulated predicted protein 711121 ybfE 945291 ybfE Escherichia coli K12 lexA-regulated predicted protein NP_415211.2 710828 R 83333 CDS NP_415212.1 16128662 945288 complement(711261..712025) 1 NC_000913.2 conserved protein 712025 ybfF 945288 ybfF Escherichia coli K12 conserved protein NP_415212.1 711261 R 83333 CDS NP_415213.1 16128663 945272 712210..712755 1 NC_000913.2 negative modulator of initiation of replication; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: DNA-dependent DNA replication [goid 0006261]; regulatory protein for replication initiation 712755 seqA 945272 seqA Escherichia coli K12 regulatory protein for replication initiation NP_415213.1 712210 D 83333 CDS NP_415214.1 16128664 945271 712781..714421 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glucose metabolic process [goid 0006006]; phosphoglucomutase 714421 pgm 945271 pgm Escherichia coli K12 phosphoglucomutase NP_415214.1 712781 D 83333 CDS NP_415215.1 16128665 945274 714635..715129 1 NC_000913.2 putative pectinase; predicted protein 715129 ybfP 945274 ybfP Escherichia coli K12 predicted protein NP_415215.1 714635 D 83333 CDS b0691 945287 complement(715170..715820) 1 NC_000913.2 predicted protein; 715820 ybfG 945287 ybfG Escherichia coli K12 715170 R 83333 CDS b4636 5625563 complement(715944..716093) 1 NC_000913.2 pseudogene; 716093 ybfI 5625563 ybfI Escherichia coli K12 715944 R 83333 CDS NP_415219.1 16128668 945422 complement(716169..717488) 1 NC_000913.2 putrescine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: putrescine:ornithine antiporter activity [goid 0015496]; GO_process: amine catabolic process [goid 0009310]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: response to osmotic stress [goid 0006970]; putrescine/proton symporter: putrescine/ornithine antiporter 717488 potE 945422 potE Escherichia coli K12 putrescine/proton symporter: putrescine/ornithine antiporter NP_415219.1 716169 R 83333 CDS NP_415220.1 16128669 945297 complement(717485..719683) 1 NC_000913.2 GO_process: polyamine biosynthetic process [goid 0006596]; ornithine decarboxylase isozyme, inducible 719683 speF 945297 speF Escherichia coli K12 ornithine decarboxylase isozyme, inducible NP_415220.1 717485 R 83333 CDS YP_001165310.1 145698231 948953 719806..720063 1 NC_000913.2 hypothetical protein 720063 ybfK 948953 ybfK Escherichia coli K12 hypothetical protein YP_001165310.1 719806 D 83333 CDS NP_415222.1 16128670 945302 complement(720279..720956) 1 NC_000913.2 regulator of kdp operon (transcriptional effector); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with KdpD 720956 kdpE 945302 kdpE Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with KdpD NP_415222.1 720279 R 83333 CDS NP_415223.1 16128671 946744 complement(720953..723637) 1 NC_000913.2 sensor for high-affinity potassium transport system; sensory histidine kinase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein 723637 kdpD 946744 kdpD Escherichia coli K12 fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein NP_415223.1 720953 R 83333 CDS NP_415224.1 16128672 947508 complement(723630..724202) 1 NC_000913.2 high-affinity potassium transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; potassium translocating ATPase, subunit C 724202 kdpC 947508 kdpC Escherichia coli K12 potassium translocating ATPase, subunit C NP_415224.1 723630 R 83333 CDS NP_415225.1 16128673 947450 complement(724211..726259) 1 NC_000913.2 ATPase of high-affinity potassium transport system, B chain; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; potassium translocating ATPase, subunit B 726259 kdpB 947450 kdpB Escherichia coli K12 potassium translocating ATPase, subunit B NP_415225.1 724211 R 83333 CDS NP_415226.1 16128674 946045 complement(726282..727955) 1 NC_000913.2 ATPase of high-affinity potassium transport system, A chain; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; potassium translocating ATPase, subunit A 727955 kdpA 946045 kdpA Escherichia coli K12 potassium translocating ATPase, subunit A NP_415226.1 726282 R 83333 CDS YP_588443.1 94541101 948946 complement(727955..728044) 1 NC_000913.2 GO_component: anchored to membrane [goid 0031225]; potassium ion accessory transporter subunit 728044 kdpF 948946 kdpF Escherichia coli K12 potassium ion accessory transporter subunit YP_588443.1 727955 R 83333 CDS NP_415228.1 16128675 947452 728357..728563 1 NC_000913.2 predicted protein 728563 ybfA 947452 ybfA Escherichia coli K12 predicted protein NP_415228.1 728357 D 83333 CDS NP_415229.1 16128676 945306 728806..732999 1 NC_000913.2 rhsC element core protein RshC 732999 rhsC 945306 rhsC Escherichia coli K12 rhsC element core protein RshC NP_415229.1 728806 D 83333 CDS NP_415230.1 16128677 947566 732999..733325 1 NC_000913.2 predicted inner membrane protein 733325 ybfB 947566 ybfB Escherichia coli K12 predicted inner membrane protein NP_415230.1 732999 D 83333 CDS b0703 946124 733356..734876 1 NC_000913.2 pseudogene, rhs-like; 734876 ybfO 946124 ybfO Escherichia coli K12 733356 D 83333 CDS NP_415232.1 16128679 947288 734873..735442 1 NC_000913.2 predicted protein 735442 ybfC 947288 ybfC Escherichia coli K12 predicted protein NP_415232.1 734873 D 83333 CDS YP_001165311.1 145698232 1450245 735668..735922 1 NC_000913.2 predicted transposase 735922 ybfQ 1450245 ybfQ Escherichia coli K12 predicted transposase YP_001165311.1 735668 D 83333 CDS b0705 947075 736048..737184 1 NC_000913.2 predicted transposase (pseudogene);putative factor; Not classified putative receptor protein; 737184 ybfL 947075 ybfL Escherichia coli K12 736048 D 83333 CDS NP_415234.1 16128681 945176 737315..738076 1 NC_000913.2 putative DNA ligase; conserved protein 738076 ybfD 945176 ybfD Escherichia coli K12 conserved protein NP_415234.1 737315 D 83333 CDS NP_415235.1 16128682 944853 738224..738733 1 NC_000913.2 conserved protein 738733 ybgA 944853 ybgA Escherichia coli K12 conserved protein NP_415235.1 738224 D 83333 CDS NP_415236.1 16128683 947005 738730..740148 1 NC_000913.2 deoxyribodipyrimidine photolyase (photoreactivation); GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; deoxyribodipyrimidine photolyase, FAD-binding 740148 phr 947005 phr Escherichia coli K12 deoxyribodipyrimidine photolyase, FAD-binding NP_415236.1 738730 D 83333 CDS NP_415237.1 16128684 947368 complement(740298..741779) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; predicted transporter 741779 ybgH 947368 ybgH Escherichia coli K12 predicted transporter NP_415237.1 740298 R 83333 CDS NP_415238.1 16128685 945824 742050..742793 1 NC_000913.2 conserved metal-binding protein 742793 ybgI 945824 ybgI Escherichia coli K12 conserved metal-binding protein NP_415238.1 742050 D 83333 CDS NP_415239.1 16128686 945311 742816..743472 1 NC_000913.2 putative carboxylase; predicted enzyme subunit 743472 ybgJ 945311 ybgJ Escherichia coli K12 predicted enzyme subunit NP_415239.1 742816 D 83333 CDS NP_415240.1 16128687 945317 743466..744398 1 NC_000913.2 putative carboxylase; predicted enzyme subunit 744398 ybgK 945317 ybgK Escherichia coli K12 predicted enzyme subunit NP_415240.1 743466 D 83333 CDS NP_415241.1 16128688 945318 744388..745122 1 NC_000913.2 putative lactam utilization protein; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to drug [goid 0042493]; predicted lactam utilization protein 745122 ybgL 945318 ybgL Escherichia coli K12 predicted lactam utilization protein NP_415241.1 744388 D 83333 CDS NP_415242.1 16128689 945320 745158..745949 1 NC_000913.2 endonuclease VIII and DNA N-glycosylase with an AP lyase activity; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase 745949 nei 945320 nei Escherichia coli K12 endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase NP_415242.1 745158 D 83333 CDS NP_415243.4 90111163 945321 complement(745946..746992) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted regulator 746992 abrB 945321 abrB Escherichia coli K12 predicted regulator NP_415243.4 745946 R 83333 CDS NP_415244.4 90111164 947550 complement(747144..748205) 1 NC_000913.2 predicted fimbrial-like adhesin protein 748205 ybgO 947550 ybgO Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415244.4 747144 R 83333 CDS NP_415245.1 16128692 945110 complement(748202..748930) 1 NC_000913.2 putative chaperone; GO_process: protein folding [goid 0006457]; predicted assembly protein 748930 ybgP 945110 ybgP Escherichia coli K12 predicted assembly protein NP_415245.1 748202 R 83333 CDS NP_415246.2 90111165 946537 complement(748945..751392) 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 751392 ybgQ 946537 ybgQ Escherichia coli K12 predicted outer membrane protein NP_415246.2 748945 R 83333 CDS NP_415247.1 16128694 945325 complement(751452..752018) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 752018 ybgD 945325 ybgD Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415247.1 751452 R 83333 CDS NP_415248.1 16128695 945323 complement(752408..753691) 1 NC_000913.2 GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: anaerobic respiration [goid 0009061]; citrate synthase 753691 gltA 945323 gltA Escherichia coli K12 citrate synthase NP_415248.1 752408 R 83333 CDS NP_415249.1 16128696 945316 754400..754789 1 NC_000913.2 succinate dehydrogenase, cytochrome b556; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; GO_process: cytochrome complex assembly [goid 0017004]; succinate dehydrogenase, membrane subunit, binds cytochrome b556 754789 sdhC 945316 sdhC Escherichia coli K12 succinate dehydrogenase, membrane subunit, binds cytochrome b556 NP_415249.1 754400 D 83333 CDS NP_415250.1 16128697 945322 754783..755130 1 NC_000913.2 succinate dehydrogenase, hydrophobic subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; succinate dehydrogenase, membrane subunit, binds cytochrome b556 755130 sdhD 945322 sdhD Escherichia coli K12 succinate dehydrogenase, membrane subunit, binds cytochrome b556 NP_415250.1 754783 D 83333 CDS NP_415251.1 16128698 945402 755130..756896 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; succinate dehydrogenase, flavoprotein subunit 756896 sdhA 945402 sdhA Escherichia coli K12 succinate dehydrogenase, flavoprotein subunit NP_415251.1 755130 D 83333 CDS NP_415252.1 16128699 945300 756912..757628 1 NC_000913.2 succinate dehydrogenase, iron sulfur protein; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: aerobic respiration [goid 0009060]; succinate dehydrogenase, FeS subunit 757628 sdhB 945300 sdhB Escherichia coli K12 succinate dehydrogenase, FeS subunit NP_415252.1 756912 D 83333 CDS NP_415254.1 16128701 945303 757929..760730 1 NC_000913.2 2-oxoglutarate dehydrogenase (decarboxylase component); GO_process: tricarboxylic acid cycle [goid 0006099]; 2-oxoglutarate decarboxylase, thiamin-requiring 760730 sucA 945303 sucA Escherichia coli K12 2-oxoglutarate decarboxylase, thiamin-requiring NP_415254.1 757929 D 83333 CDS NP_415255.1 16128702 945307 760745..761962 1 NC_000913.2 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component); GO_process: tricarboxylic acid cycle [goid 0006099]; dihydrolipoyltranssuccinase 761962 sucB 945307 sucB Escherichia coli K12 dihydrolipoyltranssuccinase NP_415255.1 760745 D 83333 CDS NP_415256.1 16128703 945312 762237..763403 1 NC_000913.2 GO_process: tricarboxylic acid cycle [goid 0006099]; succinyl-CoA synthetase, beta subunit 763403 sucC 945312 sucC Escherichia coli K12 succinyl-CoA synthetase, beta subunit NP_415256.1 762237 D 83333 CDS NP_415257.1 16128704 945314 763403..764272 1 NC_000913.2 succinyl-CoA synthetase, alpha subunit; GO_process: tricarboxylic acid cycle [goid 0006099]; succinyl-CoA synthetase, NAD(P)-binding, alpha subunit 764272 sucD 945314 sucD Escherichia coli K12 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit NP_415257.1 763403 D 83333 CDS NP_415258.1 16128705 945371 complement(764376..765098) 1 NC_000913.2 transcriptional regulator of succinylCoA synthetase operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-binding transcriptional dual regulator, fatty-acyl-binding 765098 mngR 945371 mngR Escherichia coli K12 DNA-binding transcriptional dual regulator, fatty-acyl-binding NP_415258.1 764376 R 83333 CDS NP_415259.1 16128706 945355 765207..767183 1 NC_000913.2 protein modification enzyme, induction of ompC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; GO_process: response to temperature stimulus [goid 0009266]; fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component 767183 mngA 945355 mngA Escherichia coli K12 fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component NP_415259.1 765207 D 83333 CDS NP_415260.1 16128707 945359 767201..769834 1 NC_000913.2 putative sugar hydrolase; GO_process: carbohydrate catabolic process [goid 0016052]; alpha-mannosidase 769834 mngB 945359 mngB Escherichia coli K12 alpha-mannosidase NP_415260.1 767201 D 83333 CDS NP_415261.2 90111166 945341 770681..772249 1 NC_000913.2 cytochrome d terminal oxidase, polypeptide subunit I; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome d terminal oxidase, subunit I 772249 cydA 945341 cydA Escherichia coli K12 cytochrome d terminal oxidase, subunit I NP_415261.2 770681 D 83333 CDS NP_415262.1 16128709 945347 772265..773404 1 NC_000913.2 cytochrome d terminal oxidase polypeptide subunit II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome d terminal oxidase, subunit II 773404 cydB 945347 cydB Escherichia coli K12 cytochrome d terminal oxidase, subunit II NP_415262.1 772265 D 83333 CDS YP_588444.1 94541102 1450246 773419..773532 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; conserved protein 773532 ybgT 1450246 ybgT Escherichia coli K12 conserved protein YP_588444.1 773419 D 83333 CDS NP_415263.1 16128710 945326 773532..773825 1 NC_000913.2 conserved inner membrane protein 773825 ybgE 945326 ybgE Escherichia coli K12 conserved inner membrane protein NP_415263.1 773532 D 83333 CDS NP_415264.1 16128711 948907 773975..774379 1 NC_000913.2 predicted acyl-CoA thioesterase 774379 ybgC 948907 ybgC Escherichia coli K12 predicted acyl-CoA thioesterase NP_415264.1 773975 D 83333 CDS NP_415265.1 16128712 948900 774376..775068 1 NC_000913.2 inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane spanning protein in TolA-TolQ-TolR complex 775068 tolQ 948900 tolQ Escherichia coli K12 membrane spanning protein in TolA-TolQ-TolR complex NP_415265.1 774376 D 83333 CDS NP_415266.1 16128713 945328 775072..775500 1 NC_000913.2 putative inner membrane protein, involved in the tonB-independent uptake of group A colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane spanning protein in TolA-TolQ-TolR complex 775500 tolR 945328 tolR Escherichia coli K12 membrane spanning protein in TolA-TolQ-TolR complex NP_415266.1 775072 D 83333 CDS NP_415267.1 16128714 946625 775565..776830 1 NC_000913.2 membrane spanning protein, required for outer membrane integrity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane anchored protein in TolA-TolQ-TolR complex 776830 tolA 946625 tolA Escherichia coli K12 membrane anchored protein in TolA-TolQ-TolR complex NP_415267.1 775565 D 83333 CDS NP_415268.1 16128715 945429 776963..778255 1 NC_000913.2 periplasmic protein involved in the tonb-independent uptake of group A colicins; GO_component: periplasmic space [goid 0042597]; periplasmic protein 778255 tolB 945429 tolB Escherichia coli K12 periplasmic protein NP_415268.1 776963 D 83333 CDS NP_415269.1 16128716 945004 778290..778811 1 NC_000913.2 peptidoglycan-associated lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; peptidoglycan-associated outer membrane lipoprotein 778811 pal 945004 pal Escherichia coli K12 peptidoglycan-associated outer membrane lipoprotein NP_415269.1 778290 D 83333 CDS NP_415270.1 16128717 947227 778821..779612 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; predicted protein 779612 ybgF 947227 ybgF Escherichia coli K12 predicted protein NP_415270.1 778821 D 83333 CDS NP_415271.1 16128718 945351 781308..782351 1 NC_000913.2 quinolinate synthetase, A protein; GO_component: cytoplasm [goid 0005737]; GO_process: NAD biosynthetic process [goid 0009435]; quinolinate synthase, subunit A 782351 nadA 945351 nadA Escherichia coli K12 quinolinate synthase, subunit A NP_415271.1 781308 D 83333 CDS NP_415272.1 16128719 945350 782389..783108 1 NC_000913.2 required for NMN transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; predicted nicotinamide mononucleotide transporter 783108 pnuC 945350 pnuC Escherichia coli K12 predicted nicotinamide mononucleotide transporter NP_415272.1 782389 D 83333 CDS NP_415273.1 16128720 945348 complement(783105..784046) 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; zinc efflux system 784046 zitB 945348 zitB Escherichia coli K12 zinc efflux system NP_415273.1 783105 R 83333 CDS NP_415274.1 16128721 945356 complement(784160..784540) 1 NC_000913.2 putative homeobox protein; conserved protein 784540 ybgS 945356 ybgS Escherichia coli K12 conserved protein NP_415274.1 784160 R 83333 CDS NP_415275.1 16128722 945605 784856..785908 1 NC_000913.2 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible); GO_process: L-phenylalanine biosynthetic process [goid 0009094]; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible 785908 aroG 945605 aroG Escherichia coli K12 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible NP_415275.1 784856 D 83333 CDS NP_415276.1 16128723 945068 complement(786066..786818) 1 NC_000913.2 GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; phosphoglyceromutase 1 786818 gpmA 945068 gpmA Escherichia coli K12 phosphoglyceromutase 1 NP_415276.1 786066 R 83333 CDS NP_415277.1 16128724 944943 complement(787020..788060) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; galactose-1-epimerase (mutarotase) 788060 galM 944943 galM Escherichia coli K12 galactose-1-epimerase (mutarotase) NP_415277.1 787020 R 83333 CDS NP_415278.1 16128725 945358 complement(788054..789202) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: galactose metabolic process [goid 0006012]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to desiccation [goid 0009269]; galactokinase 789202 galK 945358 galK Escherichia coli K12 galactokinase NP_415278.1 788054 R 83333 CDS NP_415279.1 16128726 945357 complement(789206..790252) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: galactose metabolic process [goid 0006012]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to desiccation [goid 0009269]; galactose-1-phosphate uridylyltransferase 790252 galT 945357 galT Escherichia coli K12 galactose-1-phosphate uridylyltransferase NP_415279.1 789206 R 83333 CDS NP_415280.3 49176045 945354 complement(790262..791278) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: galactose metabolic process [goid 0006012]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; GO_process: response to desiccation [goid 0009269]; UDP-galactose-4-epimerase 791278 galE 945354 galE Escherichia coli K12 UDP-galactose-4-epimerase NP_415280.3 790262 R 83333 CDS NP_415281.1 16128728 945368 complement(791539..793011) 1 NC_000913.2 ATP-binding component of molybdate transport system; GO_component: cytoplasm [goid 0005737]; GO_function: molybdenum ion transporter activity [goid 0042888]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; fused molybdate transporter subunits of ABC superfamily: ATP-binding components 793011 modF 945368 modF Escherichia coli K12 fused molybdate transporter subunits of ABC superfamily: ATP-binding components NP_415281.1 791539 R 83333 CDS NP_415282.1 16128729 945366 complement(793079..793867) 1 NC_000913.2 molybdate uptake regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 793867 modE 945366 modE Escherichia coli K12 DNA-binding transcriptional dual regulator NP_415282.1 793079 R 83333 CDS NP_415283.1 16128730 945365 793996..794145 1 NC_000913.2 predicted protein 794145 ybhT 945365 ybhT Escherichia coli K12 predicted protein NP_415283.1 793996 D 83333 CDS NP_415284.1 16128731 945364 794312..795085 1 NC_000913.2 molybdate-binding periplasmic protein; permease; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdate transporter subunit 795085 modA 945364 modA Escherichia coli K12 molybdate transporter subunit NP_415284.1 794312 D 83333 CDS NP_415285.1 16128732 945361 795085..795774 1 NC_000913.2 molybdate transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; molybdate transporter subunit 795774 modB 945361 modB Escherichia coli K12 molybdate transporter subunit NP_415285.1 795085 D 83333 CDS NP_415286.1 16128733 945362 795777..796835 1 NC_000913.2 ATP-binding component of molybdate transport; GO_component: cytoplasm [goid 0005737]; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdate transporter subunit 796835 modC 945362 modC Escherichia coli K12 molybdate transporter subunit NP_415286.1 795777 D 83333 CDS NP_415287.1 16128734 945372 complement(796836..797654) 1 NC_000913.2 putative phosphatase; predicted hydrolase 797654 ybhA 945372 ybhA Escherichia coli K12 predicted hydrolase NP_415287.1 796836 R 83333 CDS NP_415288.1 16128735 946398 797809..798804 1 NC_000913.2 putative isomerase; 6-phosphogluconolactonase 798804 pgl 946398 pgl Escherichia coli K12 6-phosphogluconolactonase NP_415288.1 797809 D 83333 CDS NP_415289.4 145698233 944869 complement(798845..799798) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 799798 ybhD 944869 ybhD Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415289.4 798845 R 83333 CDS NP_415290.1 16128737 945375 799982..801034 1 NC_000913.2 conserved protein 801034 ybhH 945375 ybhH Escherichia coli K12 conserved protein NP_415290.1 799982 D 83333 CDS NP_415291.1 16128738 945377 801110..802543 1 NC_000913.2 putative membrane pump protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 802543 ybhI 945377 ybhI Escherichia coli K12 predicted transporter NP_415291.1 801110 D 83333 CDS NP_415292.2 90111167 945380 802726..804987 1 NC_000913.2 putative enzyme; predicted hydratase 804987 ybhJ 945380 ybhJ Escherichia coli K12 predicted hydratase NP_415292.2 802726 D 83333 CDS NP_415293.1 16128740 945381 complement(805221..806504) 1 NC_000913.2 putative pectinesterase; GO_component: cell outer membrane [goid 0009279]; GO_process: metabolic process [goid 0008152]; GO_process: polysaccharide catabolic process [goid 0000272]; predicted pectinesterase 806504 ybhC 945381 ybhC Escherichia coli K12 predicted pectinesterase NP_415293.1 805221 R 83333 CDS NP_415294.1 16128741 945383 complement(806656..807132) 1 NC_000913.2 predicted kinase inhibitor 807132 ybhB 945383 ybhB Escherichia coli K12 predicted kinase inhibitor NP_415294.1 806656 R 83333 CDS NP_415295.1 16128742 945376 complement(807191..808480) 1 NC_000913.2 7,8-diaminopelargonic acid synthetase; GO_process: biotin biosynthetic process [goid 0009102]; 7,8-diaminopelargonic acid synthase, PLP-dependent 808480 bioA 945376 bioA Escherichia coli K12 7,8-diaminopelargonic acid synthase, PLP-dependent NP_415295.1 807191 R 83333 CDS NP_415296.1 16128743 945370 808567..809607 1 NC_000913.2 biotin synthesis, sulfur insertion?; GO_process: biotin biosynthetic process [goid 0009102]; biotin synthase 809607 bioB 945370 bioB Escherichia coli K12 biotin synthase NP_415296.1 808567 D 83333 CDS NP_415297.1 16128744 945384 809604..810758 1 NC_000913.2 GO_process: biotin biosynthetic process [goid 0009102]; 8-amino-7-oxononanoate synthase 810758 bioF 945384 bioF Escherichia coli K12 8-amino-7-oxononanoate synthase NP_415297.1 809604 D 83333 CDS NP_415298.1 16128745 945388 810745..811500 1 NC_000913.2 biotin biosynthesis; reaction prior to pimeloyl CoA; GO_process: biotin biosynthetic process [goid 0009102]; predicted methltransferase, enzyme of biotin synthesis 811500 bioC 945388 bioC Escherichia coli K12 predicted methltransferase, enzyme of biotin synthesis NP_415298.1 810745 D 83333 CDS NP_415299.1 16128746 945387 811493..812170 1 NC_000913.2 GO_process: biotin biosynthetic process [goid 0009102]; dethiobiotin synthetase 812170 bioD 945387 bioD Escherichia coli K12 dethiobiotin synthetase NP_415299.1 811493 D 83333 CDS YP_001165312.1 145698234 5061512 complement(812337..812474) 1 NC_000913.2 hypothetical protein 812474 ybhU 5061512 ybhU Escherichia coli K12 hypothetical protein YP_001165312.1 812337 R 83333 CDS NP_415300.1 16128747 945385 812749..814770 1 NC_000913.2 DNA repair; excision nuclease subunit B; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; excinulease of nucleotide excision repair, DNA damage recognition component 814770 uvrB 945385 uvrB Escherichia coli K12 excinulease of nucleotide excision repair, DNA damage recognition component NP_415300.1 812749 D 83333 CDS NP_415301.1 16128748 945390 complement(814962..815870) 1 NC_000913.2 putative structural protein; predicted transferase with NAD(P)-binding Rossmann-fold domain 815870 ybhK 945390 ybhK Escherichia coli K12 predicted transferase with NAD(P)-binding Rossmann-fold domain NP_415301.1 814962 R 83333 CDS NP_415302.1 16128749 945392 816267..817256 1 NC_000913.2 molybdopterin biosynthesis, protein A; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis protein A 817256 moaA 945392 moaA Escherichia coli K12 molybdopterin biosynthesis protein A NP_415302.1 816267 D 83333 CDS NP_415303.1 16128750 945396 817278..817790 1 NC_000913.2 molybdopterin biosynthesis, protein B; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis protein B 817790 moaB 945396 moaB Escherichia coli K12 molybdopterin biosynthesis protein B NP_415303.1 817278 D 83333 CDS NP_415304.1 16128751 945397 817793..818278 1 NC_000913.2 GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis, protein C 818278 moaC 945397 moaC Escherichia coli K12 molybdopterin biosynthesis, protein C NP_415304.1 817793 D 83333 CDS NP_415305.1 16128752 945398 818271..818516 1 NC_000913.2 molybdopterin biosynthesis; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin synthase, small subunit 818516 moaD 945398 moaD Escherichia coli K12 molybdopterin synthase, small subunit NP_415305.1 818271 D 83333 CDS NP_415306.1 16128753 945399 818518..818970 1 NC_000913.2 molybdopterin converting factor, subunit 2; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin synthase, large subunit 818970 moaE 945399 moaE Escherichia coli K12 molybdopterin synthase, large subunit NP_415306.1 818518 D 83333 CDS NP_415307.1 16128754 945401 819107..819811 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein 819811 ybhL 945401 ybhL Escherichia coli K12 predicted inner membrane protein NP_415307.1 819107 D 83333 CDS NP_415308.1 16128755 949001 820016..820729 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 820729 ybhM 949001 ybhM Escherichia coli K12 conserved inner membrane protein NP_415308.1 820016 D 83333 CDS NP_415309.1 16128756 945410 complement(820765..821721) 1 NC_000913.2 conserved inner membrane protein 821721 ybhN 945410 ybhN Escherichia coli K12 conserved inner membrane protein NP_415309.1 820765 R 83333 CDS NP_415310.1 16128757 945409 complement(821721..822962) 1 NC_000913.2 cardiolipin synthase activity; GO_process: phospholipid biosynthetic process [goid 0008654]; cardiolipin synthase 2 822962 ybhO 945409 ybhO Escherichia coli K12 cardiolipin synthase 2 NP_415310.1 821721 R 83333 CDS NP_415311.1 16128758 945408 complement(822959..823720) 1 NC_000913.2 GO_process: DNA catabolic process [goid 0006308]; predicted DNase 823720 ybhP 945408 ybhP Escherichia coli K12 predicted DNase NP_415311.1 822959 R 83333 CDS NP_415312.1 16128759 945405 823853..824263 1 NC_000913.2 predicted inner membrane protein 824263 ybhQ 945405 ybhQ Escherichia coli K12 predicted inner membrane protein NP_415312.1 823853 D 83333 CDS NP_415313.1 16128760 945403 complement(824225..825331) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 825331 ybhR 945403 ybhR Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_415313.1 824225 R 83333 CDS NP_415314.1 16128761 945411 complement(825342..826475) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 826475 ybhS 945411 ybhS Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_415314.1 825342 R 83333 CDS NP_415315.4 90111168 945413 complement(826468..828204) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 828204 ybhF 945413 ybhF Escherichia coli K12 fused predicted transporter subunits of ABC superfamily: ATP-binding components NP_415315.4 826468 R 83333 CDS NP_415316.1 16128763 945414 complement(828197..829195) 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor 829195 ybhG 945414 ybhG Escherichia coli K12 predicted membrane fusion protein (MFP) component of efflux pump, membrane anchor NP_415316.1 828197 R 83333 CDS NP_415317.4 162135896 945421 complement(829195..829866) 1 NC_000913.2 putative transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 829866 ybiH 945421 ybiH Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415317.4 829195 R 83333 CDS NP_415318.1 16128765 945425 830095..831459 1 NC_000913.2 putative ATP-dependent RNA helicase; GO_process: RNA modification [goid 0009451]; RNA helicase 831459 rhlE 945425 rhlE Escherichia coli K12 RNA helicase NP_415318.1 830095 D 83333 CDS NP_415319.1 16128766 945426 complement(831691..832173) 1 NC_000913.2 conserved protein 832173 ybiA 945426 ybiA Escherichia coli K12 conserved protein NP_415319.1 831691 R 83333 CDS NP_415320.1 16128767 945431 832293..834443 1 NC_000913.2 probably ATP-dependent helicase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; ATP-dependent DNA helicase 834443 dinG 945431 dinG Escherichia coli K12 ATP-dependent DNA helicase NP_415320.1 832293 D 83333 CDS NP_415321.1 16128768 945424 834471..835433 1 NC_000913.2 putative enzyme; predicted transferase/phosphorylase 835433 ybiB 945424 ybiB Escherichia coli K12 predicted transferase/phosphorylase NP_415321.1 834471 D 83333 CDS NP_415322.1 16128769 945412 835574..836659 1 NC_000913.2 putative dehydrogenase; predicted dehydrogenase 836659 ybiC 945412 ybiC Escherichia coli K12 predicted dehydrogenase NP_415322.1 835574 D 83333 CDS NP_415323.1 16128770 945433 complement(836888..837148) 1 NC_000913.2 predicted protein 837148 ybiJ 945433 ybiJ Escherichia coli K12 predicted protein NP_415323.1 836888 R 83333 CDS NP_415324.1 16128771 945434 complement(837413..837679) 1 NC_000913.2 conserved protein 837679 ybiI 945434 ybiI Escherichia coli K12 conserved protein NP_415324.1 837413 R 83333 CDS NP_415325.4 90111170 947502 complement(837753..838430) 1 NC_000913.2 putative enzyme; conserved protein 838430 ybiX 947502 ybiX Escherichia coli K12 conserved protein NP_415325.4 837753 R 83333 CDS NP_415326.1 16128773 946246 complement(838472..840754) 1 NC_000913.2 putative outer membrane receptor for iron transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; predicted iron outer membrane transporter 840754 fiu 946246 fiu Escherichia coli K12 predicted iron outer membrane transporter NP_415326.1 838472 R 83333 CDS NP_415327.2 90111171 947523 complement(841019..841279) 1 NC_000913.2 predicted protein 841279 ybiM 947523 ybiM Escherichia coli K12 predicted protein NP_415327.2 841019 R 83333 CDS NP_415328.4 162135897 944938 841555..842481 1 NC_000913.2 predicted SAM-dependent methyltransferase 842481 ybiN 944938 ybiN Escherichia coli K12 predicted SAM-dependent methyltransferase NP_415328.4 841555 D 83333 CDS NP_415329.4 90111173 945935 complement(842478..844703) 1 NC_000913.2 putative transport protein; predicted mechanosensitive channel 844703 ybiO 945935 ybiO Escherichia coli K12 predicted mechanosensitive channel NP_415329.4 842478 R 83333 CDS NP_415330.1 16128777 945435 complement(844964..845686) 1 NC_000913.2 ATP-binding component of glutamine high-affinity transport system; GO_component: cytoplasm [goid 0005737]; GO_process: glutamine biosynthetic process [goid 0006542]; glutamine transporter subunit 845686 glnQ 945435 glnQ Escherichia coli K12 glutamine transporter subunit NP_415330.1 844964 R 83333 CDS NP_415331.1 16128778 945621 complement(845683..846342) 1 NC_000913.2 glutamine high-affinity transport system; membrane component; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamine biosynthetic process [goid 0006542]; glutamine transporter subunit 846342 glnP 945621 glnP Escherichia coli K12 glutamine transporter subunit NP_415331.1 845683 R 83333 CDS NP_415332.1 16128779 944872 complement(846481..847227) 1 NC_000913.2 periplasmic glutamine-binding protein; permease; GO_component: periplasmic space [goid 0042597]; GO_process: glutamine biosynthetic process [goid 0006542]; glutamine transporter subunit 847227 glnH 944872 glnH Escherichia coli K12 glutamine transporter subunit NP_415332.1 846481 R 83333 CDS NP_415333.1 16128780 945101 complement(847631..848134) 1 NC_000913.2 global regulator, starvation conditions; GO_component: cytoplasm [goid 0005737]; GO_process: response to starvation [goid 0042594]; Fe-binding and storage protein 848134 dps 945101 dps Escherichia coli K12 Fe-binding and storage protein NP_415333.1 847631 R 83333 CDS NP_415334.1 16128781 947045 complement(848433..849320) 1 NC_000913.2 putative transmembrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; threonine and homoserine efflux system 849320 rhtA 947045 rhtA Escherichia coli K12 threonine and homoserine efflux system NP_415334.1 848433 R 83333 CDS NP_415335.1 16128782 944967 849673..850188 1 NC_000913.2 outer membrane protein X; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane protein 850188 ompX 944967 ompX Escherichia coli K12 outer membrane protein NP_415335.1 849673 D 83333 CDS NP_415336.1 16128783 945360 complement(850237..851820) 1 NC_000913.2 putative enzyme; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted hydrolase, inner membrane 851820 ybiP 945360 ybiP Escherichia coli K12 predicted hydrolase, inner membrane NP_415336.1 850237 R 83333 CDS NP_415337.1 16128784 945436 851894..852163 1 NC_000913.2 predicted protein 852163 yliL 945436 yliL Escherichia coli K12 predicted protein NP_415337.1 851894 D 83333 CDS NP_415338.1 16128785 945437 852406..852873 1 NC_000913.2 DNA-binding transcriptional regulator of mntH 852873 mntR 945437 mntR Escherichia coli K12 DNA-binding transcriptional regulator of mntH NP_415338.1 852406 D 83333 CDS NP_415339.1 16128786 945438 852870..853988 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted transporter 853988 ybiR 945438 ybiR Escherichia coli K12 predicted transporter NP_415339.1 852870 D 83333 CDS NP_415340.1 16128787 945441 complement(854047..854967) 1 NC_000913.2 conserved protein 854967 ybiS 945441 ybiS Escherichia coli K12 conserved protein NP_415340.1 854047 R 83333 CDS NP_415341.1 16128788 945440 855186..856778 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 856778 ybiT 945440 ybiT Escherichia coli K12 fused predicted transporter subunits of ABC superfamily: ATP-binding components NP_415341.1 855186 D 83333 CDS NP_415342.1 16128789 945439 complement(857019..858284) 1 NC_000913.2 predicted protein 858284 ybiU 945439 ybiU Escherichia coli K12 predicted protein NP_415342.1 857019 R 83333 CDS NP_415343.1 16128790 945432 complement(858436..859251) 1 NC_000913.2 predicted hydrolase 859251 ybiV 945432 ybiV Escherichia coli K12 predicted hydrolase NP_415343.1 858436 R 83333 CDS NP_415344.1 16128791 945444 complement(859397..861829) 1 NC_000913.2 GO_process: fermentation [goid 0006113]; predicted pyruvate formate lyase 861829 ybiW 945444 ybiW Escherichia coli K12 predicted pyruvate formate lyase NP_415344.1 859397 R 83333 CDS NP_415345.1 16128792 945445 complement(861835..862761) 1 NC_000913.2 GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; predicted pyruvate formate lyase activating enzyme 862761 ybiY 945445 ybiY Escherichia coli K12 predicted pyruvate formate lyase activating enzyme NP_415345.1 861835 R 83333 CDS NP_415346.4 90111174 945449 862865..863527 1 NC_000913.2 fructose-6-phosphate aldolase; fructose-6-phosphate aldolase 1 863527 fsaA 945449 fsaA Escherichia coli K12 fructose-6-phosphate aldolase 1 NP_415346.4 862865 D 83333 CDS NP_415347.1 16128794 945452 complement(863603..864352) 1 NC_000913.2 molybdopterin biosynthesis; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin synthase sulfurylase 864352 moeB 945452 moeB Escherichia coli K12 molybdopterin synthase sulfurylase NP_415347.1 863603 R 83333 CDS NP_415348.1 16128795 945454 complement(864352..865587) 1 NC_000913.2 molybdopterin biosynthesis; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin biosynthesis protein 865587 moeA 945454 moeA Escherichia coli K12 molybdopterin biosynthesis protein NP_415348.1 864352 R 83333 CDS NP_415349.1 16128796 945456 865791..866756 1 NC_000913.2 putative asparaginase; GO_process: amino acid catabolic process [goid 0009063]; L-asparaginase 866756 iaaA 945456 iaaA Escherichia coli K12 L-asparaginase NP_415349.1 865791 D 83333 CDS NP_415350.2 145698235 945457 866743..868614 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted peptide transport subunits of ABC superfamily: ATP-binding components 868614 gsiA 945457 gsiA Escherichia coli K12 fused predicted peptide transport subunits of ABC superfamily: ATP-binding components NP_415350.2 866743 D 83333 CDS NP_415351.1 16128798 945459 868634..870172 1 NC_000913.2 putative transport protein; GO_component: periplasmic space [goid 0042597]; predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily 870172 gsiB 945459 gsiB Escherichia coli K12 predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily NP_415351.1 868634 D 83333 CDS NP_415352.1 16128799 945460 870190..871110 1 NC_000913.2 putative transport system permease protein; GO_component: organelle inner membrane [goid 0019866]; predicted peptide transporter subunit: membrane component of ABC superfamily 871110 gsiC 945460 gsiC Escherichia coli K12 predicted peptide transporter subunit: membrane component of ABC superfamily NP_415352.1 870190 D 83333 CDS NP_415353.1 16128800 945461 871113..872024 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted peptide transporter subunit: membrane component of ABC superfamily 872024 gsiD 945461 gsiD Escherichia coli K12 predicted peptide transporter subunit: membrane component of ABC superfamily NP_415353.1 871113 D 83333 CDS NP_415354.1 16128801 945462 872202..874550 1 NC_000913.2 conserved inner membrane protein 874550 yliE 945462 yliE Escherichia coli K12 conserved inner membrane protein NP_415354.1 872202 D 83333 CDS NP_415355.1 16128802 945463 874558..875886 1 NC_000913.2 predicted diguanylate cyclase 875886 yliF 945463 yliF Escherichia coli K12 predicted diguanylate cyclase NP_415355.1 874558 D 83333 CDS NP_415356.1 16128803 945465 complement(875933..877258) 1 NC_000913.2 predicted SAM-dependent methyltransferase 877258 yliG 945465 yliG Escherichia coli K12 predicted SAM-dependent methyltransferase NP_415356.1 875933 R 83333 CDS NP_415357.1 16128804 945466 877471..877854 1 NC_000913.2 putative receptor; conserved protein 877854 bssR 945466 bssR Escherichia coli K12 conserved protein NP_415357.1 877471 D 83333 CDS NP_415358.1 16128805 945467 877965..879080 1 NC_000913.2 putative dehydrogenase; predicted dehydrogenase 879080 yliI 945467 yliI Escherichia coli K12 predicted dehydrogenase NP_415358.1 877965 D 83333 CDS NP_415359.4 90111175 945469 complement(879077..879703) 1 NC_000913.2 putative transferase; predicted glutathione S-transferase 879703 yliJ 945469 yliJ Escherichia coli K12 predicted glutathione S-transferase NP_415359.4 879077 R 83333 CDS NP_415360.1 16128807 945455 879950..881152 1 NC_000913.2 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6; GO_component: periplasmic space [goid 0042597]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) 881152 dacC 945455 dacC Escherichia coli K12 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) NP_415360.1 879950 D 83333 CDS NP_415361.1 16128808 945453 complement(881199..881957) 1 NC_000913.2 transcriptional repressor for deo operon, tsx, nupG; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 881957 deoR 945453 deoR Escherichia coli K12 DNA-binding transcriptional repressor NP_415361.1 881199 R 83333 CDS NP_415362.1 16128809 945450 complement(882015..882611) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; undecaprenyl pyrophosphate phosphatase 882611 ybjG 945450 ybjG Escherichia coli K12 undecaprenyl pyrophosphate phosphatase NP_415362.1 882015 R 83333 CDS NP_415363.1 16128810 945448 882896..884128 1 NC_000913.2 proton motive force efflux pump; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 884128 cmr 945448 cmr Escherichia coli K12 multidrug efflux system protein NP_415363.1 882896 D 83333 CDS NP_415364.1 16128811 945447 complement(884169..884453) 1 NC_000913.2 predicted protein 884453 ybjH 945447 ybjH Escherichia coli K12 predicted protein NP_415364.1 884169 R 83333 CDS NP_415365.4 90111176 945470 complement(884539..885354) 1 NC_000913.2 conserved protein 885354 ybjI 945470 ybjI Escherichia coli K12 conserved protein NP_415365.4 884539 R 83333 CDS NP_415366.1 16128813 945471 complement(885354..886562) 1 NC_000913.2 putative DEOR-type transcriptional regulator; predicted transporter 886562 ybjJ 945471 ybjJ Escherichia coli K12 predicted transporter NP_415366.1 885354 R 83333 CDS NP_415367.1 16128814 945473 886646..887182 1 NC_000913.2 putative DEOR-type transcriptional regulator; predicted DNA-binding transcriptional regulator 887182 ybjK 945473 ybjK Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415367.1 886646 D 83333 CDS NP_415368.1 16128815 945474 complement(887357..889042) 1 NC_000913.2 putative transport protein; predicted transporter 889042 ybjL 945474 ybjL Escherichia coli K12 predicted transporter NP_415368.1 887357 R 83333 CDS NP_415369.1 16128816 945477 889312..889689 1 NC_000913.2 predicted inner membrane protein 889689 ybjM 945477 ybjM Escherichia coli K12 predicted inner membrane protein NP_415369.1 889312 D 83333 CDS NP_415370.1 16128817 945479 complement(889719..889976) 1 NC_000913.2 glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase; glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) 889976 grxA 945479 grxA Escherichia coli K12 glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a) NP_415370.1 889719 R 83333 CDS NP_415371.1 16128818 945481 890136..890423 1 NC_000913.2 predicted inner membrane protein 890423 ybjC 945481 ybjC Escherichia coli K12 predicted inner membrane protein NP_415371.1 890136 D 83333 CDS NP_415372.1 16128819 945483 890407..891129 1 NC_000913.2 GO_process: anaerobic respiration [goid 0009061]; nitroreductase A, NADPH-dependent, FMN-dependent 891129 nfsA 945483 nfsA Escherichia coli K12 nitroreductase A, NADPH-dependent, FMN-dependent NP_415372.1 890407 D 83333 CDS NP_415373.1 16128820 945484 891190..892092 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; ribosomal protein S6 modification protein 892092 rimK 945484 rimK Escherichia coli K12 ribosomal protein S6 modification protein NP_415373.1 891190 D 83333 CDS NP_415374.1 16128821 945482 892180..892656 1 NC_000913.2 putative sensory transduction regulator; predicted oxidoreductase 892656 ybjN 945482 ybjN Escherichia coli K12 predicted oxidoreductase NP_415374.1 892180 D 83333 CDS NP_415375.1 16128822 945480 893007..894119 1 NC_000913.2 periplasmic putrescine-binding protein; permease protein; GO_component: periplasmic space [goid 0042597]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: periplasmic-binding component of ABC superfamily 894119 potF 945480 potF Escherichia coli K12 putrescine transporter subunit: periplasmic-binding component of ABC superfamily NP_415375.1 893007 D 83333 CDS NP_415376.4 90111177 945476 894214..895347 1 NC_000913.2 ATP-binding component of putrescine transport system; GO_component: cytoplasm [goid 0005737]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: ATP-binding component of ABC superfamily 895347 potG 945476 potG Escherichia coli K12 putrescine transporter subunit: ATP-binding component of ABC superfamily NP_415376.4 894214 D 83333 CDS NP_415377.1 16128824 945475 895357..896310 1 NC_000913.2 putrescine transport protein; permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: membrane component of ABC superfamily 896310 potH 945475 potH Escherichia coli K12 putrescine transporter subunit: membrane component of ABC superfamily NP_415377.1 895357 D 83333 CDS NP_415378.1 16128825 945485 896307..897152 1 NC_000913.2 putrescine transport protein; permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; GO_process: putrescine transport [goid 0015847]; putrescine transporter subunit: membrane component of ABC superfamily 897152 potI 945485 potI Escherichia coli K12 putrescine transporter subunit: membrane component of ABC superfamily NP_415378.1 896307 D 83333 CDS NP_415379.1 16128826 945488 897212..897700 1 NC_000913.2 predicted inner membrane protein 897700 ybjO 945488 ybjO Escherichia coli K12 predicted inner membrane protein NP_415379.1 897212 D 83333 CDS NP_415380.1 16128827 947260 897741..898868 1 NC_000913.2 putative enzyme; GO_process: RNA modification [goid 0009451]; 23S rRNA m(5)U747 methyltransferase 898868 rumB 947260 rumB Escherichia coli K12 23S rRNA m(5)U747 methyltransferase NP_415380.1 897741 D 83333 CDS NP_415381.1 16128828 948981 complement(899067..899798) 1 NC_000913.2 arginine 3rd transport system periplasmic binding protein; GO_component: periplasmic space [goid 0042597]; GO_process: arginine biosynthetic process [goid 0006526]; arginine transporter subunit 899798 artJ 948981 artJ Escherichia coli K12 arginine transporter subunit NP_415381.1 899067 R 83333 CDS NP_415382.1 16128829 949066 complement(900089..900757) 1 NC_000913.2 arginine 3rd transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: amino acid catabolic process [goid 0009063]; arginine transporter subunit 900757 artM 949066 artM Escherichia coli K12 arginine transporter subunit NP_415382.1 900089 R 83333 CDS NP_415383.1 16128830 949046 complement(900757..901473) 1 NC_000913.2 arginine 3rd transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: arginine biosynthetic process [goid 0006526]; arginine transporter subunit 901473 artQ 949046 artQ Escherichia coli K12 arginine transporter subunit NP_415383.1 900757 R 83333 CDS NP_415384.1 16128831 948988 complement(901480..902211) 1 NC_000913.2 arginine 3rd transport system periplasmic binding protein; GO_component: periplasmic space [goid 0042597]; GO_process: glutamine biosynthetic process [goid 0006542]; arginine transporter subunit 902211 artI 948988 artI Escherichia coli K12 arginine transporter subunit NP_415384.1 901480 R 83333 CDS NP_415385.1 16128832 945489 complement(902229..902957) 1 NC_000913.2 ATP-binding component of 3rd arginine transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; arginine transporter subunit 902957 artP 945489 artP Escherichia coli K12 arginine transporter subunit NP_415385.1 902229 R 83333 CDS NP_415386.1 16128833 945491 complement(903175..903690) 1 NC_000913.2 putative lipoprotein; predicted lipoprotein 903690 ybjP 945491 ybjP Escherichia coli K12 predicted lipoprotein NP_415386.1 903175 R 83333 CDS NP_415387.1 16128834 945493 903816..904139 1 NC_000913.2 conserved protein 904139 ybjQ 945493 ybjQ Escherichia coli K12 conserved protein NP_415387.1 903816 D 83333 CDS NP_415388.1 16128835 945494 904136..904966 1 NC_000913.2 predicted amidase and lipoprotein 904966 ybjR 945494 ybjR Escherichia coli K12 predicted amidase and lipoprotein NP_415388.1 904136 D 83333 CDS NP_415389.2 90111178 945495 complement(904963..905976) 1 NC_000913.2 predicted NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain 905976 ybjS 945495 ybjS Escherichia coli K12 predicted NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_415389.2 904963 R 83333 CDS NP_415390.4 90111179 945496 complement(906075..907505) 1 NC_000913.2 conserved protein with NAD(P)-binding Rossmann-fold domain 907505 ybjT 945496 ybjT Escherichia coli K12 conserved protein with NAD(P)-binding Rossmann-fold domain NP_415390.4 906075 R 83333 CDS NP_415391.1 16128838 944955 complement(907516..908517) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycine biosynthetic process [goid 0006545]; L-allo-threonine aldolase, PLP-dependent 908517 ltaE 944955 ltaE Escherichia coli K12 L-allo-threonine aldolase, PLP-dependent NP_415391.1 907516 R 83333 CDS NP_415392.1 16128839 946132 complement(908554..910272) 1 NC_000913.2 pyruvate oxidase; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pyruvate catabolic process [goid 0042867]; pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding 910272 poxB 946132 poxB Escherichia coli K12 pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding NP_415392.1 908554 R 83333 CDS NP_415393.1 16128840 947660 complement(910405..911373) 1 NC_000913.2 HCP oxidoreductase, NADH-dependent 911373 hcr 947660 hcr Escherichia coli K12 HCP oxidoreductase, NADH-dependent NP_415393.1 910405 R 83333 CDS NP_415394.4 90111180 946592 complement(911385..913037) 1 NC_000913.2 hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases 913037 hcp 946592 hcp Escherichia coli K12 hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases NP_415394.4 911385 R 83333 CDS NP_415395.2 90111181 947142 complement(913181..914080) 1 NC_000913.2 putative surface protein; predicted transporter 914080 ybjE 947142 ybjE Escherichia coli K12 predicted transporter NP_415395.2 913181 R 83333 CDS NP_415396.1 16128843 945497 complement(914575..915270) 1 NC_000913.2 transmembrane water channel; aquaporin Z; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to osmotic stress [goid 0006970]; aquaporin 915270 aqpZ 945497 aqpZ Escherichia coli K12 aquaporin NP_415396.1 914575 R 83333 CDS NP_415397.1 16128844 945498 915696..917354 1 NC_000913.2 conserved protein with nucleoside triphosphate hydrolase domain 917354 ybjD 945498 ybjD Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_415397.1 915696 D 83333 CDS NP_415398.1 16128845 946025 complement(917351..918343) 1 NC_000913.2 putative enzyme; conserved protein 918343 ybjX 946025 ybjX Escherichia coli K12 conserved protein NP_415398.1 917351 R 83333 CDS NP_415399.4 90111182 947322 918458..919573 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; macrolide transporter subunit, membrane fusion protein (MFP) component 919573 macA 947322 macA Escherichia coli K12 macrolide transporter subunit, membrane fusion protein (MFP) component NP_415399.4 918458 D 83333 CDS NP_415400.1 16128847 945164 919570..921516 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component 921516 macB 945164 macB Escherichia coli K12 fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component NP_415400.1 919570 D 83333 CDS NP_415401.1 16128848 945669 complement(921589..921813) 1 NC_000913.2 stress induced DNA replication inhibitor; GO_component: cytoplasm [goid 0005737]; cold shock protein homolog 921813 cspD 945669 cspD Escherichia coli K12 cold shock protein homolog NP_415401.1 921589 R 83333 CDS NP_415402.1 16128849 948443 922136..922456 1 NC_000913.2 regulatory protein for ClpA substrate specificity 922456 clpS 948443 clpS Escherichia coli K12 regulatory protein for ClpA substrate specificity NP_415402.1 922136 D 83333 CDS NP_415403.1 16128850 945764 922487..924763 1 NC_000913.2 ATP-binding component of serine protease; GO_component: cytoplasm [goid 0005737]; ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity 924763 clpA 945764 clpA Escherichia coli K12 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity NP_415403.1 922487 D 83333 CDS NP_415404.1 16128851 945500 complement(925448..925666) 1 NC_000913.2 protein chain initiation factor IF-1; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; translation initiation factor IF-1 925666 infA 945500 infA Escherichia coli K12 translation initiation factor IF-1 NP_415404.1 925448 R 83333 CDS NP_415405.1 16128852 945490 complement(925951..926655) 1 NC_000913.2 leucyl, phenylalanyl-tRNA-protein transferase; GO_component: cytoplasm [goid 0005737]; GO_process: proteolysis [goid 0006508]; leucyl/phenylalanyl-tRNA-protein transferase 926655 aat 945490 aat Escherichia coli K12 leucyl/phenylalanyl-tRNA-protein transferase NP_415405.1 925951 R 83333 CDS NP_415406.1 16128853 945504 complement(926697..928418) 1 NC_000913.2 ATP-binding component of cytochrome-related transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component 928418 cydC 945504 cydC Escherichia coli K12 fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component NP_415406.1 926697 R 83333 CDS NP_415407.1 16128854 949052 complement(928419..930185) 1 NC_000913.2 ATP-binding component of cytochrome-related transport, Zn sensitive; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component 930185 cydD 949052 cydD Escherichia coli K12 fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component NP_415407.1 928419 R 83333 CDS NP_415408.1 16128855 949054 complement(930308..931273) 1 NC_000913.2 thioredoxin reductase; GO_component: cytoplasm [goid 0005737]; thioredoxin reductase, FAD/NAD(P)-binding 931273 trxB 949054 trxB Escherichia coli K12 thioredoxin reductase, FAD/NAD(P)-binding NP_415408.1 930308 R 83333 CDS NP_415409.1 16128856 949051 931818..932312 1 NC_000913.2 regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: leucine biosynthetic process [goid 0009098]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, leucine-binding 932312 lrp 949051 lrp Escherichia coli K12 DNA-binding transcriptional dual regulator, leucine-binding NP_415409.1 931818 D 83333 CDS NP_415410.1 16128857 945102 932447..936436 1 NC_000913.2 cell division protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: SOS response [goid 0009432]; DNA-binding membrane protein required for chromosome resolution and partitioning 936436 ftsK 945102 ftsK Escherichia coli K12 DNA-binding membrane protein required for chromosome resolution and partitioning NP_415410.1 932447 D 83333 CDS NP_415411.2 145698236 948989 936595..937206 1 NC_000913.2 periplasmic protein effects translocation of lipoproteins from inner membrane to outer; GO_component: periplasmic space [goid 0042597]; chaperone for lipoproteins 937206 lolA 948989 lolA Escherichia coli K12 chaperone for lipoproteins NP_415411.2 936595 D 83333 CDS NP_415412.1 16128859 945505 937217..938560 1 NC_000913.2 putative polynucleotide enzyme; recombination protein 938560 rarA 945505 rarA Escherichia coli K12 recombination protein NP_415412.1 937217 D 83333 CDS NP_415413.1 16128860 945506 938651..939943 1 NC_000913.2 serine tRNA synthetase; also charges selenocystein tRNA with serine; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine 939943 serS 945506 serS Escherichia coli K12 seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine NP_415413.1 938651 D 83333 CDS NP_415414.4 90111183 945508 940182..942626 1 NC_000913.2 anaerobic dimethyl sulfoxide reductase subunit A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; dimethyl sulfoxide reductase, anaerobic, subunit A 942626 dmsA 945508 dmsA Escherichia coli K12 dimethyl sulfoxide reductase, anaerobic, subunit A NP_415414.4 940182 D 83333 CDS NP_415415.1 16128862 945507 942637..943254 1 NC_000913.2 anaerobic dimethyl sulfoxide reductase subunit B; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; dimethyl sulfoxide reductase, anaerobic, subunit B 943254 dmsB 945507 dmsB Escherichia coli K12 dimethyl sulfoxide reductase, anaerobic, subunit B NP_415415.1 942637 D 83333 CDS NP_415416.1 16128863 945502 943256..944119 1 NC_000913.2 anaerobic dimethyl sulfoxide reductase subunit C; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; dimethyl sulfoxide reductase, anaerobic, subunit C 944119 dmsC 945502 dmsC Escherichia coli K12 dimethyl sulfoxide reductase, anaerobic, subunit C NP_415416.1 943256 D 83333 CDS NP_415417.1 16128864 945512 complement(944154..944780) 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; predicted hydrolase 944780 ycaC 945512 ycaC Escherichia coli K12 predicted hydrolase NP_415417.1 944154 R 83333 CDS NP_415418.1 16128865 945515 945094..946242 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 946242 ycaD 945515 ycaD Escherichia coli K12 predicted transporter NP_415418.1 945094 D 83333 CDS NP_415419.2 90111184 945518 946452..947882 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 947882 ycaM 945518 ycaM Escherichia coli K12 predicted transporter NP_415419.2 946452 D 83333 CDS NP_415420.1 16128867 945523 complement(947883..948791) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 948791 ycaN 945523 ycaN Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415420.1 947883 R 83333 CDS NP_415421.1 16128868 945520 948891..949481 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; conserved protein 949481 ycaK 945520 ycaK Escherichia coli K12 conserved protein NP_415421.1 948891 D 83333 CDS NP_415422.1 16128869 945517 complement(949563..950303) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; pyruvate formate lyase activating enzyme 1 950303 pflA 945517 pflA Escherichia coli K12 pyruvate formate lyase activating enzyme 1 NP_415422.1 949563 R 83333 CDS NP_415423.1 16128870 945514 complement(950495..952777) 1 NC_000913.2 formate acetyltransferase 1; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: amino acid catabolic process [goid 0009063]; pyruvate formate lyase I 952777 pflB 945514 pflB Escherichia coli K12 pyruvate formate lyase I NP_415423.1 950495 R 83333 CDS NP_415424.1 16128871 945513 complement(952832..953689) 1 NC_000913.2 probable formate transporter (formate channel 1); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; formate transporter 953689 focA 945513 focA Escherichia coli K12 formate transporter NP_415424.1 952832 R 83333 CDS NP_415425.4 90111185 945509 complement(954095..955855) 1 NC_000913.2 conserved protein 955855 ycaO 945509 ycaO Escherichia coli K12 conserved protein NP_415425.4 954095 R 83333 CDS NP_415426.1 16128873 945525 955985..956677 1 NC_000913.2 conserved inner membrane protein 956677 ycaP 945525 ycaP Escherichia coli K12 conserved inner membrane protein NP_415426.1 955985 D 83333 CDS NP_415427.1 16128874 945527 956876..957964 1 NC_000913.2 3-phosphoserine aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: L-serine biosynthetic process [goid 0006564]; 3-phosphoserine/phosphohydroxythreonine aminotransferase 957964 serC 945527 serC Escherichia coli K12 3-phosphoserine/phosphohydroxythreonine aminotransferase NP_415427.1 956876 D 83333 CDS NP_415428.1 16128875 945528 958035..959318 1 NC_000913.2 GO_process: chorismate biosynthetic process [goid 0009423]; 5-enolpyruvylshikimate-3-phosphate synthetase 959318 aroA 945528 aroA Escherichia coli K12 5-enolpyruvylshikimate-3-phosphate synthetase NP_415428.1 958035 D 83333 CDS NP_415429.2 90111186 945534 959487..960251 1 NC_000913.2 putative heat shock protein; GO_process: response to temperature stimulus [goid 0009266]; predicted peptidase with chaperone function 960251 ycaL 945534 ycaL Escherichia coli K12 predicted peptidase with chaperone function NP_415429.2 959487 D 83333 CDS NP_415430.1 16128877 945535 960424..961107 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytidylate kinase 961107 cmk 945535 cmk Escherichia coli K12 cytidylate kinase NP_415430.1 960424 D 83333 CDS NP_415431.1 16128878 945536 961218..962891 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S1 962891 rpsA 945536 rpsA Escherichia coli K12 30S ribosomal subunit protein S1 NP_415431.1 961218 D 83333 CDS NP_415432.1 16128879 945533 963051..963335 1 NC_000913.2 integration host factor (IHF), beta subunit; site-specific recombination; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; integration host factor (IHF), DNA-binding protein, beta subunit 963335 ihfB 945533 ihfB Escherichia coli K12 integration host factor (IHF), DNA-binding protein, beta subunit NP_415432.1 963051 D 83333 CDS NP_415433.4 90111187 945531 963543..965807 1 NC_000913.2 conserved inner membrane protein 965807 ycaI 945531 ycaI Escherichia coli K12 conserved inner membrane protein NP_415433.4 963543 D 83333 CDS NP_415434.1 16128881 945530 965844..967592 1 NC_000913.2 ATP-binding transport protein; multicopy suppressor of htrB; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component 967592 msbA 945530 msbA Escherichia coli K12 fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component NP_415434.1 965844 D 83333 CDS NP_415435.1 16128882 945526 967589..968575 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: K antigen biosynthetic process [goid 0009248]; lipid A 4'kinase 968575 lpxK 945526 lpxK Escherichia coli K12 lipid A 4'kinase NP_415435.1 967589 D 83333 CDS NP_415436.1 16128883 945524 968612..969844 1 NC_000913.2 conserved protein 969844 ycaQ 945524 ycaQ Escherichia coli K12 conserved protein NP_415436.1 968612 D 83333 CDS NP_415437.1 16128884 945537 969896..970078 1 NC_000913.2 conserved protein 970078 ycaR 945537 ycaR Escherichia coli K12 conserved protein NP_415437.1 969896 D 83333 CDS NP_415438.1 16128885 945539 970075..970821 1 NC_000913.2 CTP:CMP-3-deoxy-D-manno-octulosonate transferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: K antigen biosynthetic process [goid 0009248]; 3-deoxy-manno-octulosonate cytidylyltransferase 970821 kdsB 945539 kdsB Escherichia coli K12 3-deoxy-manno-octulosonate cytidylyltransferase NP_415438.1 970075 D 83333 CDS NP_415439.1 16128886 945545 970975..971868 1 NC_000913.2 conserved protein 971868 ycbJ 945545 ycbJ Escherichia coli K12 conserved protein NP_415439.1 970975 D 83333 CDS NP_415440.1 16128887 945546 complement(971845..972624) 1 NC_000913.2 conserved inner membrane protein 972624 ycbC 945546 ycbC Escherichia coli K12 conserved inner membrane protein NP_415440.1 971845 R 83333 CDS NP_415441.1 16128888 945547 972760..973545 1 NC_000913.2 S-adenosylmethionine-dependent methyltransferase; GO_process: glycerol metabolic process [goid 0006071]; predicted S-adenosyl-L-methionine-dependent methyltransferase 973545 smtA 945547 smtA Escherichia coli K12 predicted S-adenosyl-L-methionine-dependent methyltransferase NP_415441.1 972760 D 83333 CDS NP_415442.1 16128889 945548 973542..974864 1 NC_000913.2 mukF protein (killing factor KICB); Involved in chromosome partioning, Ca2+ binding protein 974864 mukF 945548 mukF Escherichia coli K12 Involved in chromosome partioning, Ca2+ binding protein NP_415442.1 973542 D 83333 CDS NP_415443.1 16128890 945550 974872..975549 1 NC_000913.2 protein involved in chromosome partitioning 975549 mukE 945550 mukE Escherichia coli K12 protein involved in chromosome partitioning NP_415443.1 974872 D 83333 CDS NP_415444.1 16128891 945549 975549..980009 1 NC_000913.2 kinesin-like cell division protein involved in chromosome partitioning; fused chromosome partitioning protein: predicted nucleotide hydrolase/conserved protein/conserved protein 980009 mukB 945549 mukB Escherichia coli K12 fused chromosome partitioning protein: predicted nucleotide hydrolase/conserved protein/conserved protein NP_415444.1 975549 D 83333 CDS NP_415445.1 16128892 945541 980270..982117 1 NC_000913.2 putative amidase; predicted carboxypeptidase 982117 ycbB 945541 ycbB Escherichia coli K12 predicted carboxypeptidase NP_415445.1 980270 D 83333 CDS NP_415446.1 16128893 945538 982298..982846 1 NC_000913.2 conserved protein 982846 ycbK 945538 ycbK Escherichia coli K12 conserved protein NP_415446.1 982298 D 83333 CDS NP_415447.1 16128894 945551 982873..983520 1 NC_000913.2 predicted metal-binding enzyme 983520 ycbL 945551 ycbL Escherichia coli K12 predicted metal-binding enzyme NP_415447.1 982873 D 83333 CDS NP_415448.1 16128895 945553 complement(983742..984932) 1 NC_000913.2 aspartate aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: aspartate biosynthetic process [goid 0006532]; aspartate aminotransferase, PLP-dependent 984932 aspC 945553 aspC Escherichia coli K12 aspartate aminotransferase, PLP-dependent NP_415448.1 983742 R 83333 CDS NP_415449.1 16128896 945554 complement(985117..986205) 1 NC_000913.2 outer membrane protein 1a (Ia;b;F); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane porin 1a (Ia;b;F) 986205 ompF 945554 ompF Escherichia coli K12 outer membrane porin 1a (Ia;b;F) NP_415449.1 985117 R 83333 CDS NP_415450.1 16128897 945555 complement(986808..988208) 1 NC_000913.2 asparagine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; asparaginyl tRNA synthetase 988208 asnS 945555 asnS Escherichia coli K12 asparaginyl tRNA synthetase NP_415450.1 986808 R 83333 CDS NP_415451.1 16128898 946648 complement(988377..989579) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: NAD biosynthetic process [goid 0009435]; nicotinate phosphoribosyltransferase 989579 pncB 946648 pncB Escherichia coli K12 nicotinate phosphoribosyltransferase NP_415451.1 988377 R 83333 CDS NP_415452.1 16128899 947253 989845..992457 1 NC_000913.2 aminopeptidase N 992457 pepN 947253 pepN Escherichia coli K12 aminopeptidase N NP_415452.1 989845 D 83333 CDS NP_415453.1 16128900 947220 complement(992500..993267) 1 NC_000913.2 ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; alkanesulfonate transporter subunit 993267 ssuB 947220 ssuB Escherichia coli K12 alkanesulfonate transporter subunit NP_415453.1 992500 R 83333 CDS NP_415454.4 90111188 947216 complement(993264..994055) 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; alkanesulfonate transporter subunit 994055 ssuC 947216 ssuC Escherichia coli K12 alkanesulfonate transporter subunit NP_415454.4 993264 R 83333 CDS NP_415455.1 16128902 945557 complement(994066..995211) 1 NC_000913.2 GO_process: sulfur metabolic process [goid 0006790]; alkanesulfonate monooxygenase, FMNH(2)-dependent 995211 ssuD 945557 ssuD Escherichia coli K12 alkanesulfonate monooxygenase, FMNH(2)-dependent NP_415455.1 994066 R 83333 CDS NP_415456.4 90111189 945560 complement(995208..996167) 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; alkanesulfonate transporter subunit 996167 ssuA 945560 ssuA Escherichia coli K12 alkanesulfonate transporter subunit NP_415456.4 995208 R 83333 CDS NP_415457.1 16128904 945947 complement(996160..996735) 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: response to starvation [goid 0042594]; NAD(P)H-dependent FMN reductase 996735 ssuE 945947 ssuE Escherichia coli K12 NAD(P)H-dependent FMN reductase NP_415457.1 996160 R 83333 CDS NP_415458.2 90111190 948306 997091..997630 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 997630 ycbQ 948306 ycbQ Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415458.2 997091 D 83333 CDS NP_415459.1 16128906 946773 997713..998414 1 NC_000913.2 GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 998414 ycbR 946773 ycbR Escherichia coli K12 predicted periplasmic pilin chaperone NP_415459.1 997713 D 83333 CDS NP_415460.1 16128907 946934 998439..1001039 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane usher protein 1001039 ycbS 946934 ycbS Escherichia coli K12 predicted outer membrane usher protein NP_415460.1 998439 D 83333 CDS NP_415461.1 16128908 947185 1001030..1002100 1 NC_000913.2 GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1002100 ycbT 947185 ycbT Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415461.1 1001030 D 83333 CDS NP_415462.1 16128909 945561 1002112..1002654 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1002654 ycbU 945561 ycbU Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415462.1 1002112 D 83333 CDS NP_415463.2 90111191 945562 1002662..1003177 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1003177 ycbV 945562 ycbV Escherichia coli K12 predicted fimbrial-like adhesin protein NP_415463.2 1002662 D 83333 CDS NP_415464.4 90111192 945559 1003170..1003880 1 NC_000913.2 GO_process: protein folding [goid 0006457]; predicted periplasmic pilini chaperone 1003880 ycbF 945559 ycbF Escherichia coli K12 predicted periplasmic pilini chaperone NP_415464.4 1003170 D 83333 CDS NP_415465.1 16128912 945556 1003991..1005001 1 NC_000913.2 dihydro-orotate dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; dihydro-orotate oxidase, FMN-linked 1005001 pyrD 945556 pyrD Escherichia coli K12 dihydro-orotate oxidase, FMN-linked NP_415465.1 1003991 D 83333 CDS NP_415466.4 90111193 945552 1005175..1005717 1 NC_000913.2 predicted protein 1005717 ycbW 945552 ycbW Escherichia coli K12 predicted protein NP_415466.4 1005175 D 83333 CDS NP_415467.1 16128914 945563 complement(1005714..1006823) 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; predicted 2Fe-2S cluster-containing protein 1006823 ycbX 945563 ycbX Escherichia coli K12 predicted 2Fe-2S cluster-containing protein NP_415467.1 1005714 R 83333 CDS NP_415468.1 16128915 945564 1007067..1009175 1 NC_000913.2 putative oxidoreductase; predicted methyltransferase 1009175 rlmL 945564 rlmL Escherichia coli K12 predicted methyltransferase NP_415468.1 1007067 D 83333 CDS NP_415469.1 16128916 945566 1009187..1011094 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 1011094 uup 945566 uup Escherichia coli K12 fused predicted transporter subunits of ABC superfamily: ATP-binding components NP_415469.1 1009187 D 83333 CDS NP_415470.1 16128917 944999 1011224..1012477 1 NC_000913.2 paraquat-inducible protein A; paraquat-inducible membrane protein A 1012477 pqiA 944999 pqiA Escherichia coli K12 paraquat-inducible membrane protein A NP_415470.1 1011224 D 83333 CDS NP_415471.1 16128918 945653 1012482..1014122 1 NC_000913.2 paraquat-inducible protein B 1014122 pqiB 945653 pqiB Escherichia coli K12 paraquat-inducible protein B NP_415471.1 1012482 D 83333 CDS NP_415472.2 145698237 946972 1014119..1014682 1 NC_000913.2 conserved protein 1014682 ymbA 946972 ymbA Escherichia coli K12 conserved protein NP_415472.2 1014119 D 83333 CDS NP_415473.1 16128920 945567 1014938..1015105 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; ribosome modulation factor 1015105 rmf 945567 rmf Escherichia coli K12 ribosome modulation factor NP_415473.1 1014938 D 83333 CDS NP_415474.1 16128921 945568 complement(1015175..1015693) 1 NC_000913.2 beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase; beta-hydroxydecanoyl thioester dehydrase 1015693 fabA 945568 fabA Escherichia coli K12 beta-hydroxydecanoyl thioester dehydrase NP_415474.1 1015175 R 83333 CDS NP_415475.1 16128922 945569 complement(1015762..1017522) 1 NC_000913.2 putative ATP-dependent protease; GO_process: proteolysis [goid 0006508]; predicted peptidase 1017522 ycbZ 945569 ycbZ Escherichia coli K12 predicted peptidase NP_415475.1 1015762 R 83333 CDS NP_415476.1 16128923 945570 1017708..1018160 1 NC_000913.2 putative dehydrogenase; conserved protein 1018160 ycbG 945570 ycbG Escherichia coli K12 conserved protein NP_415476.1 1017708 D 83333 CDS NP_415477.1 16128924 945571 complement(1018236..1019276) 1 NC_000913.2 outer membrane protein 3a (II*;G;d); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane protein A (3a;II*;G;d) 1019276 ompA 945571 ompA Escherichia coli K12 outer membrane protein A (3a;II*;G;d) NP_415477.1 1018236 R 83333 CDS NP_415478.1 16128925 947335 complement(1019633..1020142) 1 NC_000913.2 suppressor of lon; inhibits cell division and ftsZ ring formation; GO_component: periplasmic space [goid 0042597]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; SOS cell division inhibitor 1020142 sulA 947335 sulA Escherichia coli K12 SOS cell division inhibitor NP_415478.1 1019633 R 83333 CDS NP_415479.1 16128926 946504 1020361..1020990 1 NC_000913.2 conserved protein 1020990 sxy 946504 sxy Escherichia coli K12 conserved protein NP_415479.1 1020361 D 83333 CDS NP_415480.2 90111194 947001 complement(1020953..1023106) 1 NC_000913.2 predicted inner membrane protein 1023106 yccS 947001 yccS Escherichia coli K12 predicted inner membrane protein NP_415480.2 1020953 R 83333 CDS NP_415481.1 16128928 945594 complement(1023125..1023571) 1 NC_000913.2 conserved inner membrane protein 1023571 yccF 945594 yccF Escherichia coli K12 conserved inner membrane protein NP_415481.1 1023125 R 83333 CDS NP_415482.1 16128929 946227 1023694..1025748 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA helicase IV 1025748 helD 946227 helD Escherichia coli K12 DNA helicase IV NP_415482.1 1023694 D 83333 CDS NP_415483.2 90111195 945574 complement(1025780..1026238) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: methylglyoxal metabolic process [goid 0009438]; methylglyoxal synthase 1026238 mgsA 945574 mgsA Escherichia coli K12 methylglyoxal synthase NP_415483.2 1025780 R 83333 CDS NP_415484.1 16128931 945577 complement(1026334..1026996) 1 NC_000913.2 conserved protein 1026996 yccT 945577 yccT Escherichia coli K12 conserved protein NP_415484.1 1026334 R 83333 CDS NP_415485.4 90111196 949008 1027169..1027582 1 NC_000913.2 predicted CoA-binding protein with NAD(P)-binding Rossmann-fold domain 1027582 yccU 949008 yccU Escherichia coli K12 predicted CoA-binding protein with NAD(P)-binding Rossmann-fold domain NP_415485.4 1027169 D 83333 CDS NP_415486.4 145698238 945578 complement(1027627..1027944) 1 NC_000913.2 DNA-binding protein, hemimethylated 1027944 hspQ 945578 hspQ Escherichia coli K12 DNA-binding protein, hemimethylated NP_415486.4 1027627 R 83333 CDS NP_415487.4 145698239 946691 complement(1028002..1029192) 1 NC_000913.2 putative oxidoreductase; predicted methyltransferase 1029192 yccW 946691 yccW Escherichia coli K12 predicted methyltransferase NP_415487.4 1028002 R 83333 CDS NP_415488.1 16128935 945304 1029287..1029565 1 NC_000913.2 predicted acylphosphatase 1029565 yccX 945304 yccX Escherichia coli K12 predicted acylphosphatase NP_415488.1 1029287 D 83333 CDS NP_415489.4 90111197 945023 complement(1029562..1029891) 1 NC_000913.2 putative sulfite reductase; predicted sulfite reductase subunit 1029891 yccK 945023 yccK Escherichia coli K12 predicted sulfite reductase subunit NP_415489.4 1029562 R 83333 CDS NP_415490.1 16128937 946016 complement(1029982..1030641) 1 NC_000913.2 putative carrier/transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; inner membrane protein 1030641 yccA 946016 yccA Escherichia coli K12 inner membrane protein NP_415490.1 1029982 R 83333 CDS NP_415491.1 16128938 945579 1031362..1032480 1 NC_000913.2 hydrogenase-1 small subunit; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 1, small subunit 1032480 hyaA 945579 hyaA Escherichia coli K12 hydrogenase 1, small subunit NP_415491.1 1031362 D 83333 CDS NP_415492.1 16128939 945580 1032477..1034270 1 NC_000913.2 hydrogenase-1 large subunit; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 1, large subunit 1034270 hyaB 945580 hyaB Escherichia coli K12 hydrogenase 1, large subunit NP_415492.1 1032477 D 83333 CDS NP_415493.1 16128940 945581 1034289..1034996 1 NC_000913.2 probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; hydrogenase 1, b-type cytochrome subunit 1034996 hyaC 945581 hyaC Escherichia coli K12 hydrogenase 1, b-type cytochrome subunit NP_415493.1 1034289 D 83333 CDS NP_415494.1 16128941 945575 1034993..1035580 1 NC_000913.2 processing of HyaA and HyaB proteins; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved in processing of HyaA and HyaB proteins 1035580 hyaD 945575 hyaD Escherichia coli K12 protein involved in processing of HyaA and HyaB proteins NP_415494.1 1034993 D 83333 CDS NP_415495.1 16128942 945573 1035577..1035975 1 NC_000913.2 processing of HyaA and HyaB proteins; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved in processing of HyaA and HyaB proteins 1035975 hyaE 945573 hyaE Escherichia coli K12 protein involved in processing of HyaA and HyaB proteins NP_415495.1 1035577 D 83333 CDS NP_415496.1 16128943 945572 1035972..1036829 1 NC_000913.2 nickel incorporation into hydrogenase-1 proteins; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved in nickel incorporation into hydrogenase-1 proteins 1036829 hyaF 945572 hyaF Escherichia coli K12 protein involved in nickel incorporation into hydrogenase-1 proteins NP_415496.1 1035972 D 83333 CDS NP_415497.1 16128944 945585 1036963..1038507 1 NC_000913.2 GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome bd-II oxidase, subunit I 1038507 appC 945585 appC Escherichia coli K12 cytochrome bd-II oxidase, subunit I NP_415497.1 1036963 D 83333 CDS NP_415498.1 16128945 947547 1038519..1039655 1 NC_000913.2 probable third cytochrome oxidase, subunit II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; cytochrome bd-II oxidase, subunit II 1039655 appB 947547 appB Escherichia coli K12 cytochrome bd-II oxidase, subunit II NP_415498.1 1038519 D 83333 CDS YP_001165313.1 145698240 948955 1039668..1039760 1 NC_000913.2 hypothetical protein 1039760 yccB 948955 yccB Escherichia coli K12 hypothetical protein YP_001165313.1 1039668 D 83333 CDS NP_415500.1 16128946 946206 1039840..1041138 1 NC_000913.2 phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; phosphoanhydride phosphorylase 1041138 appA 946206 appA Escherichia coli K12 phosphoanhydride phosphorylase NP_415500.1 1039840 D 83333 CDS NP_415501.1 16128947 947409 complement(1041253..1043433) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; cryptic autophosphorylating protein tyrosine kinase Etk 1043433 etk 947409 etk Escherichia coli K12 cryptic autophosphorylating protein tyrosine kinase Etk NP_415501.1 1041253 R 83333 CDS NP_415502.4 90111198 945236 complement(1043453..1043899) 1 NC_000913.2 putative phosphatase; GO_process: protein modification [goid 0006464]; phosphotyrosine-protein phosphatase 1043899 etp 945236 etp Escherichia coli K12 phosphotyrosine-protein phosphatase NP_415502.4 1043453 R 83333 CDS NP_415503.1 16128949 945586 complement(1043887..1045026) 1 NC_000913.2 putative function in exopolysaccharide production; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted exopolysaccharide export protein 1045026 gfcE 945586 gfcE Escherichia coli K12 predicted exopolysaccharide export protein NP_415503.1 1043887 R 83333 CDS NP_415504.1 16128950 945588 complement(1045072..1047168) 1 NC_000913.2 conserved protein 1047168 gfcD 945588 gfcD Escherichia coli K12 conserved protein NP_415504.1 1045072 R 83333 CDS NP_415505.1 16128951 944978 complement(1047168..1047914) 1 NC_000913.2 conserved protein 1047914 gfcC 944978 gfcC Escherichia coli K12 conserved protein NP_415505.1 1047168 R 83333 CDS NP_415506.1 16128952 949118 complement(1047911..1048555) 1 NC_000913.2 putative regulator; predicted outer membrane lipoprotein 1048555 gfcB 949118 gfcB Escherichia coli K12 predicted outer membrane lipoprotein NP_415506.1 1047911 R 83333 CDS NP_415507.2 90111199 945029 complement(1048662..1048967) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted protein 1048967 gfcA 945029 gfcA Escherichia coli K12 predicted protein NP_415507.2 1048662 R 83333 CDS YP_588445.1 94541103 1450250 1049056..1049331 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 1049331 insA 1450250 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA YP_588445.1 1049056 D 83333 CDS NP_415508.1 16128954 945009 1049250..1049753 1 NC_000913.2 IS1 transposase InsAB' 1049753 insB 945009 insB Escherichia coli K12 IS1 transposase InsAB' NP_415508.1 1049250 D 83333 CDS NP_415509.1 16128955 945590 complement(1050186..1050398) 1 NC_000913.2 cold shock-like protein; GO_process: response to temperature stimulus [goid 0009266]; stress protein, member of the CspA-family 1050398 cspH 945590 cspH Escherichia coli K12 stress protein, member of the CspA-family NP_415509.1 1050186 R 83333 CDS NP_415510.1 16128956 945591 1050684..1050896 1 NC_000913.2 homolog of Salmonella cold shock protein; GO_process: response to temperature stimulus [goid 0009266]; DNA-binding transcriptional regulator 1050896 cspG 945591 cspG Escherichia coli K12 DNA-binding transcriptional regulator NP_415510.1 1050684 D 83333 CDS NP_415511.1 16128957 946951 1051070..1051300 1 NC_000913.2 suppresses fabA and ts growth mutation; cold shock gene 1051300 ymcE 946951 ymcE Escherichia coli K12 cold shock gene NP_415511.1 1051070 D 83333 CDS YP_588446.1 94541104 1450249 1051290..1051463 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted regulator of phosphatidylethanolamine synthesis 1051463 gnsA 1450249 gnsA Escherichia coli K12 predicted regulator of phosphatidylethanolamine synthesis YP_588446.1 1051290 D 83333 CDS NP_415512.1 16128958 946295 complement(1051512..1052585) 1 NC_000913.2 predicted 4Fe-4S membrane protein 1052585 yccM 946295 yccM Escherichia coli K12 predicted 4Fe-4S membrane protein NP_415512.1 1051512 R 83333 CDS NP_415513.2 90111200 945595 complement(1052657..1055401) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase in two-component regulatory system with TorR 1055401 torS 945595 torS Escherichia coli K12 hybrid sensory histidine kinase in two-component regulatory system with TorR NP_415513.2 1052657 R 83333 CDS NP_415514.1 16128960 946289 1055484..1056512 1 NC_000913.2 part of regulation of tor operon, periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; periplasmic sensory protein associated with the TorRS two-component regulatory system 1056512 torT 946289 torT Escherichia coli K12 periplasmic sensory protein associated with the TorRS two-component regulatory system NP_415514.1 1055484 D 83333 CDS NP_415515.1 16128961 946182 complement(1056485..1057177) 1 NC_000913.2 response transcriptional regulator for torA (sensor TorS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with TorS 1057177 torR 946182 torR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with TorS NP_415515.1 1056485 R 83333 CDS NP_415516.1 16128962 946252 1057307..1058479 1 NC_000913.2 trimethylamine N-oxide reductase, cytochrome c-type subunit; GO_component: periplasmic space [goid 0042597]; GO_function: electron carrier activity [goid 0009055]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: transcription [goid 0006350]; trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit 1058479 torC 946252 torC Escherichia coli K12 trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit NP_415516.1 1057307 D 83333 CDS NP_415517.1 16128963 946267 1058479..1061025 1 NC_000913.2 trimethylamine N-oxide reductase subunit; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; trimethylamine N-oxide (TMAO) reductase I, catalytic subunit 1061025 torA 946267 torA Escherichia coli K12 trimethylamine N-oxide (TMAO) reductase I, catalytic subunit NP_415517.1 1058479 D 83333 CDS NP_415518.1 16128964 945625 1061022..1061621 1 NC_000913.2 part of trimethylamine-N-oxide oxidoreductase; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I 1061621 torD 945625 torD Escherichia coli K12 chaperone involved in maturation of TorA subunit of trimethylamine N-oxide reductase system I NP_415518.1 1061022 D 83333 CDS NP_415519.1 16128965 945597 complement(1061773..1062078) 1 NC_000913.2 modulator of CbpA co-chaperone 1062078 cbpM 945597 cbpM Escherichia coli K12 modulator of CbpA co-chaperone NP_415519.1 1061773 R 83333 CDS NP_415520.1 16128966 947572 complement(1062078..1062998) 1 NC_000913.2 curved DNA-binding protein; functions closely related to DnaJ; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK 1062998 cbpA 947572 cbpA Escherichia coli K12 curved DNA-binding protein, DnaJ homologue that functions as a co-chaperone of DnaK NP_415520.1 1062078 R 83333 CDS NP_415521.1 16128967 947468 1063259..1064515 1 NC_000913.2 predicted protein 1064515 yccE 947468 yccE Escherichia coli K12 predicted protein NP_415521.1 1063259 D 83333 CDS NP_415522.1 16128968 945773 1064808..1066049 1 NC_000913.2 periplasmic glucose-1-phosphatase; GO_component: periplasmic space [goid 0042597]; GO_process: glucose metabolic process [goid 0006006]; glucose-1-phosphatase/inositol phosphatase 1066049 agp 945773 agp Escherichia coli K12 glucose-1-phosphatase/inositol phosphatase NP_415522.1 1064808 D 83333 CDS NP_415523.1 16128969 948930 complement(1066087..1066314) 1 NC_000913.2 predicted protein 1066314 yccJ 948930 yccJ Escherichia coli K12 predicted protein NP_415523.1 1066087 R 83333 CDS NP_415524.1 16128970 947263 complement(1066335..1066931) 1 NC_000913.2 flavoprotein WrbA (Trp repressor binding protein); GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; predicted flavoprotein in Trp regulation 1066931 wrbA 947263 wrbA Escherichia coli K12 predicted flavoprotein in Trp regulation NP_415524.1 1066335 R 83333 CDS NP_415525.2 94541090 945598 1067304..1067477 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; conserved protein 1067477 ymdF 945598 ymdF Escherichia coli K12 conserved protein NP_415525.2 1067304 D 83333 CDS NP_415526.4 90111201 946589 complement(1067734..1069062) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1069062 rutG 946589 rutG Escherichia coli K12 predicted transporter NP_415526.4 1067734 R 83333 CDS NP_415527.4 90111202 946594 complement(1069083..1069577) 1 NC_000913.2 predicted oxidoreductase, flavin:NADH component 1069577 rutF 946594 rutF Escherichia coli K12 predicted oxidoreductase, flavin:NADH component NP_415527.4 1069083 R 83333 CDS NP_415528.1 16128974 946591 complement(1069588..1070178) 1 NC_000913.2 predicted oxidoreductase 1070178 rutE 946591 rutE Escherichia coli K12 predicted oxidoreductase NP_415528.1 1069588 R 83333 CDS NP_415529.1 16128975 946586 complement(1070188..1070988) 1 NC_000913.2 predicted hydrolase 1070988 rutD 946586 rutD Escherichia coli K12 predicted hydrolase NP_415529.1 1070188 R 83333 CDS NP_415530.1 16128976 945599 complement(1070996..1071382) 1 NC_000913.2 conserved protein 1071382 rutC 945599 rutC Escherichia coli K12 conserved protein NP_415530.1 1070996 R 83333 CDS NP_415531.2 90111203 945699 complement(1071394..1072086) 1 NC_000913.2 predicted enzyme 1072086 rutB 945699 rutB Escherichia coli K12 predicted enzyme NP_415531.2 1071394 R 83333 CDS NP_415532.3 49176071 945643 complement(1072086..1073234) 1 NC_000913.2 predicted monooxygenase 1073234 rutA 945643 rutA Escherichia coli K12 predicted monooxygenase NP_415532.3 1072086 R 83333 CDS NP_415533.1 16128979 945075 1073465..1074103 1 NC_000913.2 hypothetical transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1074103 rutR 945075 rutR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415533.1 1073465 D 83333 CDS NP_415534.1 16128980 945600 complement(1074143..1078105) 1 NC_000913.2 proline dehydrogenase, P5C dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1078105 putA 945600 putA Escherichia coli K12 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase NP_415534.1 1074143 R 83333 CDS NP_415535.1 16128981 945602 1078528..1080036 1 NC_000913.2 major sodium/proline symporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: proline:sodium symporter activity [goid 0005298]; GO_process: proline biosynthetic process [goid 0006561]; proline:sodium symporter 1080036 putP 945602 putP Escherichia coli K12 proline:sodium symporter NP_415535.1 1078528 D 83333 CDS b4490 948956 join(1080579..1080683,1080683..1081408) 1 NC_000913.2 pseudogene ferrous iron permease; 1081408 efeU 948956 efeU Escherichia coli K12 1080579 D 83333 CDS NP_415537.1 16128982 945603 1081466..1082593 1 NC_000913.2 conserved protein 1082593 ycdO 945603 ycdO Escherichia coli K12 conserved protein NP_415537.1 1081466 D 83333 CDS NP_415538.1 16128983 946500 1082599..1083870 1 NC_000913.2 conserved protein 1083870 ycdB 946500 ycdB Escherichia coli K12 conserved protein NP_415538.1 1082599 D 83333 CDS NP_415539.1 16128984 948010 1084215..1085279 1 NC_000913.2 PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; conserved protein with nucleoside triphosphate hydrolase domain 1085279 phoH 948010 phoH Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_415539.1 1084215 D 83333 CDS NP_415540.1 16128985 947503 complement(1085329..1085742) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 1085742 pgaD 947503 pgaD Escherichia coli K12 predicted inner membrane protein NP_415540.1 1085329 R 83333 CDS NP_415541.1 16128986 945606 complement(1085744..1087069) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted glycosyl transferase 1087069 pgaC 945606 pgaC Escherichia coli K12 predicted glycosyl transferase NP_415541.1 1085744 R 83333 CDS NP_415542.1 16128987 945604 complement(1087062..1089080) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted enzyme associated with biofilm formation 1089080 pgaB 945604 pgaB Escherichia coli K12 predicted enzyme associated with biofilm formation NP_415542.1 1087062 R 83333 CDS NP_415543.1 16128988 945596 complement(1089089..1091512) 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 1091512 pgaA 945596 pgaA Escherichia coli K12 predicted outer membrane protein NP_415543.1 1089089 R 83333 CDS NP_415544.1 16128989 945593 1092099..1093457 1 NC_000913.2 predicted diguanylate cyclase 1093457 ycdT 945593 ycdT Escherichia coli K12 predicted diguanylate cyclase NP_415544.1 1092099 D 83333 CDS NP_415545.1 16128990 945587 complement(1093498..1094364) 1 NC_000913.2 IS3 element protein InsF 1094364 insF 945587 insF Escherichia coli K12 IS3 element protein InsF NP_415545.1 1093498 R 83333 CDS NP_415546.1 16128991 945584 complement(1094361..1094669) 1 NC_000913.2 IS3 element protein InsE 1094669 insE 945584 insE Escherichia coli K12 IS3 element protein InsE NP_415546.1 1094361 R 83333 CDS b1028 945589 1094728..1095069 1 NC_000913.2 pseudogene; 1095069 ymdE 945589 ymdE Escherichia coli K12 1094728 D 83333 CDS NP_415548.1 16128993 945592 1095066..1096052 1 NC_000913.2 predicted inner membrane protein 1096052 ycdU 945592 ycdU Escherichia coli K12 predicted inner membrane protein NP_415548.1 1095066 D 83333 CDS NP_415551.2 90111205 946431 1097109..1098047 1 NC_000913.2 putative dehydrogenase; 2-ketoacid reductase 1098047 ghrA 946431 ghrA Escherichia coli K12 2-ketoacid reductase NP_415551.2 1097109 D 83333 CDS NP_415552.1 16128997 948477 1098102..1098839 1 NC_000913.2 GO_process: DNA-dependent DNA replication [goid 0006261]; predicted zinc-binding hydrolase 1098839 ycdX 948477 ycdX Escherichia coli K12 predicted zinc-binding hydrolase NP_415552.1 1098102 D 83333 CDS NP_415553.1 16128998 945609 1098863..1099417 1 NC_000913.2 putative oxidoreductase component; conserved protein 1099417 ycdY 945609 ycdY Escherichia coli K12 conserved protein NP_415553.1 1098863 D 83333 CDS NP_415554.4 90111206 945617 1099519..1100010 1 NC_000913.2 predicted inner membrane protein 1100010 ycdZ 945617 ycdZ Escherichia coli K12 predicted inner membrane protein NP_415554.4 1099519 D 83333 CDS NP_415555.1 16129000 945619 complement(1100074..1100907) 1 NC_000913.2 curli production assembly/transport component, 2nd curli operon; GO_component: fimbrium [goid 0009289]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane lipoprotein 1100907 csgG 945619 csgG Escherichia coli K12 outer membrane lipoprotein NP_415555.1 1100074 R 83333 CDS NP_415556.1 16129001 945622 complement(1100934..1101350) 1 NC_000913.2 curli production assembly/transport component, 2nd curli operon; GO_component: fimbrium [goid 0009289]; predicted transport protein 1101350 csgF 945622 csgF Escherichia coli K12 predicted transport protein NP_415556.1 1100934 R 83333 CDS NP_415557.1 16129002 945711 complement(1101375..1101764) 1 NC_000913.2 curli production assembly/transport component, 2nd curli operon; GO_component: fimbrium [goid 0009289]; predicted transport protein 1101764 csgE 945711 csgE Escherichia coli K12 predicted transport protein NP_415557.1 1101375 R 83333 CDS NP_415558.1 16129003 949119 complement(1101769..1102419) 1 NC_000913.2 putative 2-component transcriptional regulator for 2nd curli operon; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator in two-component regulatory system 1102419 csgD 949119 csgD Escherichia coli K12 DNA-binding transcriptional activator in two-component regulatory system NP_415558.1 1101769 R 83333 CDS NP_415559.1 16129004 947391 1103174..1103629 1 NC_000913.2 minor curlin subunit precursor, similar ro CsgA; GO_component: fimbrium [goid 0009289]; GO_component: cell outer membrane [goid 0009279]; GO_process: glycoprotein biosynthetic process [goid 0009101]; curlin nucleator protein, minor subunit in curli complex 1103629 csgB 947391 csgB Escherichia coli K12 curlin nucleator protein, minor subunit in curli complex NP_415559.1 1103174 D 83333 CDS NP_415560.1 16129005 949055 1103670..1104125 1 NC_000913.2 curlin major subunit, coiled surface structures; cryptic; GO_component: fimbrium [goid 0009289]; GO_component: cell outer membrane [goid 0009279]; GO_process: glycoprotein biosynthetic process [goid 0009101]; cryptic curlin major subunit 1104125 csgA 949055 csgA Escherichia coli K12 cryptic curlin major subunit NP_415560.1 1103670 D 83333 CDS NP_415561.1 16129006 945623 1104184..1104516 1 NC_000913.2 putative curli production protein; GO_component: fimbrium [goid 0009289]; predicted curli production protein 1104516 csgC 945623 csgC Escherichia coli K12 predicted curli production protein NP_415561.1 1104184 D 83333 CDS NP_415562.1 16129007 949012 1104637..1104948 1 NC_000913.2 predicted protein 1104948 ymdA 949012 ymdA Escherichia coli K12 predicted protein NP_415562.1 1104637 D 83333 CDS NP_415563.1 16129008 946987 1105043..1105576 1 NC_000913.2 putative polyprotein; conserved protein 1105576 ymdB 946987 ymdB Escherichia coli K12 conserved protein NP_415563.1 1105043 D 83333 CDS NP_415564.2 90111207 947321 1105578..1106999 1 NC_000913.2 putative synthase; predicted hydrolase 1106999 ymdC 947321 ymdC Escherichia coli K12 predicted hydrolase NP_415564.2 1105578 D 83333 CDS NP_415565.1 16129010 946944 complement(1107007..1108164) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glucan biosynthetic process [goid 0009250]; GO_process: response to osmotic stress [goid 0006970]; membrane protein required for modification of periplasmic glucan 1108164 mdoC 946944 mdoC Escherichia coli K12 membrane protein required for modification of periplasmic glucan NP_415565.1 1107007 R 83333 CDS NP_415566.1 16129011 945005 1108558..1110093 1 NC_000913.2 periplasmic glucans biosynthesis protein; GO_component: periplasmic space [goid 0042597]; GO_process: glucan biosynthetic process [goid 0009250]; GO_process: response to osmotic stress [goid 0006970]; glucan biosynthesis protein, periplasmic 1110093 mdoG 945005 mdoG Escherichia coli K12 glucan biosynthesis protein, periplasmic NP_415566.1 1108558 D 83333 CDS NP_415567.1 16129012 945624 1110086..1112629 1 NC_000913.2 membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to osmotic stress [goid 0006970]; glucan biosynthesis: glycosyl transferase 1112629 mdoH 945624 mdoH Escherichia coli K12 glucan biosynthesis: glycosyl transferase NP_415567.1 1110086 D 83333 CDS NP_415568.1 16129013 945613 1112802..1113029 1 NC_000913.2 predicted lipoprotein 1113029 yceK 945613 yceK Escherichia coli K12 predicted lipoprotein NP_415568.1 1112802 D 83333 CDS NP_415569.4 90111208 945612 complement(1113030..1113404) 1 NC_000913.2 acidic protein suppresses mutants lacking function of protein export; predicted protein 1113404 msyB 945612 msyB Escherichia coli K12 predicted protein NP_415569.4 1113030 R 83333 CDS NP_415571.1 16129016 945627 complement(1113487..1114713) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted drug efflux system 1114713 mdtG 945627 mdtG Escherichia coli K12 predicted drug efflux system NP_415571.1 1113487 R 83333 CDS NP_415572.1 16129017 946216 complement(1114885..1115805) 1 NC_000913.2 heat shock protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; lauryl-acyl carrier protein (ACP)-dependent acyltransferase 1115805 lpxL 946216 lpxL Escherichia coli K12 lauryl-acyl carrier protein (ACP)-dependent acyltransferase NP_415572.1 1114885 R 83333 CDS NP_415573.1 16129018 945601 1116030..1117082 1 NC_000913.2 GO_process: cell cycle [goid 0007049]; conserved protein 1117082 yceA 945601 yceA Escherichia coli K12 conserved protein NP_415573.1 1116030 D 83333 CDS NP_415574.1 16129019 946145 complement(1117124..1117699) 1 NC_000913.2 predicted protein 1117699 yceI 946145 yceI Escherichia coli K12 predicted protein NP_415574.1 1117124 R 83333 CDS NP_415575.1 16129020 945628 complement(1117703..1118269) 1 NC_000913.2 GO_process: cytochrome complex assembly [goid 0017004]; predicted cytochrome b561 1118269 yceJ 945628 yceJ Escherichia coli K12 predicted cytochrome b561 NP_415575.1 1117703 R 83333 CDS NP_415576.1 16129021 945629 complement(1118530..1118670) 1 NC_000913.2 predicted protein 1118670 yceO 945629 yceO Escherichia coli K12 predicted protein NP_415576.1 1118530 R 83333 CDS NP_415577.1 16129022 944983 complement(1118691..1119809) 1 NC_000913.2 sarcosine oxidase-like protein; N-methyltryptophan oxidase, FAD-binding 1119809 solA 944983 solA Escherichia coli K12 N-methyltryptophan oxidase, FAD-binding NP_415577.1 1118691 R 83333 CDS NP_415578.3 49176074 946104 complement(1119924..1120178) 1 NC_000913.2 predicted protein 1120178 bssS 946104 bssS Escherichia coli K12 predicted protein NP_415578.3 1119924 R 83333 CDS NP_415579.1 16129024 945022 complement(1120465..1120710) 1 NC_000913.2 damage-inducible protein I; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA damage-inducible protein I 1120710 dinI 945022 dinI Escherichia coli K12 DNA damage-inducible protein I NP_415579.1 1120465 R 83333 CDS NP_415580.1 16129025 945787 complement(1120784..1121830) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; dihydro-orotase 1121830 pyrC 945787 pyrC Escherichia coli K12 dihydro-orotase NP_415580.1 1120784 R 83333 CDS NP_415581.1 16129026 947377 complement(1121936..1122496) 1 NC_000913.2 predicted lipoprotein 1122496 yceB 947377 yceB Escherichia coli K12 predicted lipoprotein NP_415581.1 1121936 R 83333 CDS NP_415582.1 16129027 946926 complement(1122630..1123277) 1 NC_000913.2 glutaredoxin 2; glutaredoxin 2 (Grx2) 1123277 grxB 946926 grxB Escherichia coli K12 glutaredoxin 2 (Grx2) NP_415582.1 1122630 R 83333 CDS NP_415583.4 90111209 946920 complement(1123341..1124549) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted drug efflux system 1124549 mdtH 946920 mdtH Escherichia coli K12 predicted drug efflux system NP_415583.4 1123341 R 83333 CDS NP_415584.1 16129029 946910 1124785..1125369 1 NC_000913.2 acetylation of N-terminal alanine of 30S ribosomal subunit protein S5; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; ribosomal-protein-S5-alanine N-acetyltransferase 1125369 rimJ 946910 rimJ Escherichia coli K12 ribosomal-protein-S5-alanine N-acetyltransferase NP_415584.1 1124785 D 83333 CDS NP_415585.1 16129030 945633 1125380..1126027 1 NC_000913.2 conserved protein 1126027 yceH 945633 yceH Escherichia coli K12 conserved protein NP_415585.1 1125380 D 83333 CDS NP_415586.1 16129031 945204 1126029..1126952 1 NC_000913.2 putative virulence factor; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 1126952 yceM 945204 yceM Escherichia coli K12 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_415586.1 1126029 D 83333 CDS NP_415587.1 16129032 945487 1127062..1128597 1 NC_000913.2 putative virulence factor; predicted inner membrane protein 1128597 yceN 945487 yceN Escherichia coli K12 predicted inner membrane protein NP_415587.1 1127062 D 83333 CDS NP_415588.1 16129033 945634 complement(1128637..1129053) 1 NC_000913.2 protein of flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; export chaperone for FlgK and FlgL 1129053 flgN 945634 flgN Escherichia coli K12 export chaperone for FlgK and FlgL NP_415588.1 1128637 R 83333 CDS NP_415589.1 16129034 946684 complement(1129058..1129351) 1 NC_000913.2 anti-FliA (anti-sigma) factor; also known as RflB protein; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; anti-sigma factor for FliA (sigma 28) 1129351 flgM 946684 flgM Escherichia coli K12 anti-sigma factor for FliA (sigma 28) NP_415589.1 1129058 R 83333 CDS NP_415590.1 16129035 946300 complement(1129427..1130086) 1 NC_000913.2 flagellar biosynthesis; assembly of basal-body periplasmic P ring; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; assembly protein for flagellar basal-body periplasmic P ring 1130086 flgA 946300 flgA Escherichia coli K12 assembly protein for flagellar basal-body periplasmic P ring NP_415590.1 1129427 R 83333 CDS NP_415591.1 16129036 945678 1130241..1130657 1 NC_000913.2 flagellar biosynthesis, cell-proximal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-proximal portion of basal-body rod 1130657 flgB 945678 flgB Escherichia coli K12 flagellar component of cell-proximal portion of basal-body rod NP_415591.1 1130241 D 83333 CDS NP_415592.1 16129037 946687 1130661..1131065 1 NC_000913.2 flagellar biosynthesis, cell-proximal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-proximal portion of basal-body rod 1131065 flgC 946687 flgC Escherichia coli K12 flagellar component of cell-proximal portion of basal-body rod NP_415592.1 1130661 D 83333 CDS NP_415593.1 16129038 945813 1131077..1131772 1 NC_000913.2 flagellar biosynthesis, initiation of hook assembly; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar hook assembly protein 1131772 flgD 945813 flgD Escherichia coli K12 flagellar hook assembly protein NP_415593.1 1131077 D 83333 CDS NP_415594.1 16129039 945636 1131797..1133005 1 NC_000913.2 flagellar biosynthesis, hook protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar hook protein 1133005 flgE 945636 flgE Escherichia coli K12 flagellar hook protein NP_415594.1 1131797 D 83333 CDS NP_415595.1 16129040 945639 1133025..1133780 1 NC_000913.2 flagellar biosynthesis, cell-proximal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-proximal portion of basal-body rod 1133780 flgF 945639 flgF Escherichia coli K12 flagellar component of cell-proximal portion of basal-body rod NP_415595.1 1133025 D 83333 CDS NP_415596.1 16129041 945647 1133952..1134734 1 NC_000913.2 flagellar biosynthesis, cell-distal portion of basal-body rod; GO_component: flagellum [goid 0019861]; GO_component: periplasmic space [goid 0042597]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar component of cell-distal portion of basal-body rod 1134734 flgG 945647 flgG Escherichia coli K12 flagellar component of cell-distal portion of basal-body rod NP_415596.1 1133952 D 83333 CDS NP_415597.1 16129042 946996 1134787..1135485 1 NC_000913.2 flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: flagellum [goid 0019861]; GO_component: cell outer membrane [goid 0009279]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar protein of basal-body outer-membrane L ring 1135485 flgH 946996 flgH Escherichia coli K12 flagellar protein of basal-body outer-membrane L ring NP_415597.1 1134787 D 83333 CDS NP_415598.3 49176076 947534 1135497..1136594 1 NC_000913.2 homolog of Salmonella P-ring of flagella basal body; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; predicted flagellar basal body protein 1136594 flgI 947534 flgI Escherichia coli K12 predicted flagellar basal body protein NP_415598.3 1135497 D 83333 CDS NP_415599.1 16129044 947456 1136594..1137535 1 NC_000913.2 flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; muramidase 1137535 flgJ 947456 flgJ Escherichia coli K12 muramidase NP_415599.1 1136594 D 83333 CDS NP_415600.1 16129045 945648 1137601..1139244 1 NC_000913.2 flagellar biosynthesis, hook-filament junction protein 1; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; flagellar hook-filament junction protein 1 1139244 flgK 945648 flgK Escherichia coli K12 flagellar hook-filament junction protein 1 NP_415600.1 1137601 D 83333 CDS NP_415601.1 16129046 945646 1139256..1140209 1 NC_000913.2 flagellar biosynthesis; hook-filament junction protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; flagellar hook-filament junction protein 1140209 flgL 945646 flgL Escherichia coli K12 flagellar hook-filament junction protein NP_415601.1 1139256 D 83333 CDS NP_415602.1 16129047 945641 complement(1140405..1143590) 1 NC_000913.2 RNase E, membrane attachment, mRNA turnover, maturation 5S RNA; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein 1143590 rne 945641 rne Escherichia coli K12 fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein NP_415602.1 1140405 R 83333 CDS NP_415603.2 90111210 945640 1143725..1144045 1 NC_000913.2 predicted protein 1144045 yceQ 945640 yceQ Escherichia coli K12 predicted protein NP_415603.2 1143725 D 83333 CDS NP_415604.1 16129049 945637 1144163..1145122 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridylate synthase 1145122 rluC 945637 rluC Escherichia coli K12 23S rRNA pseudouridylate synthase NP_415604.1 1144163 D 83333 CDS NP_415605.2 90111211 945631 complement(1145234..1145818) 1 NC_000913.2 predicted protein 1145818 yceF 945631 yceF Escherichia coli K12 predicted protein NP_415605.2 1145234 R 83333 CDS NP_415606.1 16129051 945650 1146017..1146538 1 NC_000913.2 conserved protein 1146538 yceD 945650 yceD Escherichia coli K12 conserved protein NP_415606.1 1146017 D 83333 CDS NP_415607.1 16129052 945657 1146590..1146763 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L32 1146763 rpmF 945657 rpmF Escherichia coli K12 50S ribosomal subunit protein L32 NP_415607.1 1146590 D 83333 CDS NP_415608.2 90111212 946165 1146844..1147914 1 NC_000913.2 glycerolphosphate auxotrophy in plsB background; GO_process: phospholipid biosynthetic process [goid 0008654]; fatty acid/phospholipid synthesis protein 1147914 plsX 946165 plsX Escherichia coli K12 fatty acid/phospholipid synthesis protein NP_415608.2 1146844 D 83333 CDS NP_415609.1 16129054 946003 1147982..1148935 1 NC_000913.2 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase; GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] synthase III 1148935 fabH 946003 fabH Escherichia coli K12 3-oxoacyl-[acyl-carrier-protein] synthase III NP_415609.1 1147982 D 83333 CDS NP_415610.1 16129055 945766 1148951..1149880 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; malonyl-CoA-[acyl-carrier-protein] transacylase 1149880 fabD 945766 fabD Escherichia coli K12 malonyl-CoA-[acyl-carrier-protein] transacylase NP_415610.1 1148951 D 83333 CDS NP_415611.1 16129056 945645 1149893..1150627 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] reductase 1150627 fabG 945645 fabG Escherichia coli K12 3-oxoacyl-[acyl-carrier-protein] reductase NP_415611.1 1149893 D 83333 CDS NP_415612.1 16129057 944805 1150838..1151074 1 NC_000913.2 acyl carrier protein; GO_process: acyl-carrier-protein biosynthetic process [goid 0042967]; acyl carrier protein (ACP) 1151074 acpP 944805 acpP Escherichia coli K12 acyl carrier protein (ACP) NP_415612.1 1150838 D 83333 CDS NP_415613.1 16129058 946665 1151162..1152403 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] synthase II 1152403 fabF 946665 fabF Escherichia coli K12 3-oxoacyl-[acyl-carrier-protein] synthase II NP_415613.1 1151162 D 83333 CDS NP_415614.1 16129059 946647 1152523..1153332 1 NC_000913.2 4-amino-4-deoxychorismate lyase; GO_process: folic acid biosynthetic process [goid 0046656]; 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex 1153332 pabC 946647 pabC Escherichia coli K12 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex NP_415614.1 1152523 D 83333 CDS NP_415615.1 16129060 945660 1153335..1154357 1 NC_000913.2 putative thymidylate kinase; predicted aminodeoxychorismate lyase 1154357 yceG 945660 yceG Escherichia coli K12 predicted aminodeoxychorismate lyase NP_415615.1 1153335 D 83333 CDS NP_415616.1 16129061 945663 1154347..1154988 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidylate kinase 1154988 tmk 945663 tmk Escherichia coli K12 thymidylate kinase NP_415616.1 1154347 D 83333 CDS NP_415617.1 16129062 945661 1154985..1155989 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, delta prime subunit 1155989 holB 945661 holB Escherichia coli K12 DNA polymerase III, delta prime subunit NP_415617.1 1154985 D 83333 CDS NP_415618.1 16129063 945656 1156000..1156797 1 NC_000913.2 predicted metallodependent hydrolase 1156797 ycfH 945656 ycfH Escherichia coli K12 predicted metallodependent hydrolase NP_415618.1 1156000 D 83333 CDS NP_415619.1 16129064 945651 1157092..1158525 1 NC_000913.2 PTS system, glucose-specific IIBC component; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; fused glucose-specific PTS enzymes: IIB component/IIC component 1158525 ptsG 945651 ptsG Escherichia coli K12 fused glucose-specific PTS enzymes: IIB component/IIC component NP_415619.1 1157092 D 83333 CDS NP_415620.1 16129065 945649 complement(1158585..1160774) 1 NC_000913.2 outer membrane receptor for ferric iron uptake; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; ferric-rhodotorulic acid outer membrane transporter 1160774 fhuE 945649 fhuE Escherichia coli K12 ferric-rhodotorulic acid outer membrane transporter NP_415620.1 1158585 R 83333 CDS NP_415621.3 49176077 948549 1161108..1161467 1 NC_000913.2 GO_process: translation [goid 0006412]; purine nucleoside phosphoramidase 1161467 hinT 948549 hinT Escherichia coli K12 purine nucleoside phosphoramidase NP_415621.3 1161108 D 83333 CDS NP_415622.1 16129067 948539 1161470..1161847 1 NC_000913.2 predicted protein 1161847 ycfL 948539 ycfL Escherichia coli K12 predicted protein NP_415622.1 1161470 D 83333 CDS NP_415623.1 16129068 948536 1161861..1162502 1 NC_000913.2 predicted outer membrane lipoprotein 1162502 ycfM 948536 ycfM Escherichia coli K12 predicted outer membrane lipoprotein NP_415623.1 1161861 D 83333 CDS NP_415624.1 16129069 948525 1162483..1163307 1 NC_000913.2 putative beta-glucosidase; thiamin kinase 1163307 thiK 948525 thiK Escherichia coli K12 thiamin kinase NP_415624.1 1162483 D 83333 CDS NP_415625.1 16129070 945671 1163318..1164343 1 NC_000913.2 GO_process: peptidoglycan metabolic process [goid 0000270]; beta N-acetyl-glucosaminidase 1164343 nagZ 945671 nagZ Escherichia coli K12 beta N-acetyl-glucosaminidase NP_415625.1 1163318 D 83333 CDS NP_415626.4 90111213 945676 1164366..1164908 1 NC_000913.2 conserved protein 1164908 ycfP 945676 ycfP Escherichia coli K12 conserved protein NP_415626.4 1164366 D 83333 CDS NP_415627.1 16129072 946792 1165308..1166612 1 NC_000913.2 respiratory NADH dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; respiratory NADH dehydrogenase 2/cupric reductase 1166612 ndh 946792 ndh Escherichia coli K12 respiratory NADH dehydrogenase 2/cupric reductase NP_415627.1 1165308 D 83333 CDS NP_415628.1 16129073 945977 1166822..1167361 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted protein 1167361 ycfJ 945977 ycfJ Escherichia coli K12 predicted protein NP_415628.1 1166822 D 83333 CDS NP_415629.4 90111214 947425 complement(1167423..1168055) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1168055 ycfQ 947425 ycfQ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415629.4 1167423 R 83333 CDS NP_415630.1 16129075 945492 1168296..1168553 1 NC_000913.2 predicted protein 1168553 bhsA 945492 bhsA Escherichia coli K12 predicted protein NP_415630.1 1168296 D 83333 CDS NP_415631.1 16129076 945666 complement(1168635..1169597) 1 NC_000913.2 conserved protein 1169597 ycfS 945666 ycfS Escherichia coli K12 conserved protein NP_415631.1 1168635 R 83333 CDS NP_415632.1 16129077 945681 complement(1169741..1173187) 1 NC_000913.2 transcription-repair coupling factor; mutation frequency decline; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; transcription-repair coupling factor 1173187 mfd 945681 mfd Escherichia coli K12 transcription-repair coupling factor NP_415632.1 1169741 R 83333 CDS NP_415633.1 16129078 945679 complement(1173315..1174388) 1 NC_000913.2 predicted inner membrane protein 1174388 ycfT 945679 ycfT Escherichia coli K12 predicted inner membrane protein NP_415633.1 1173315 R 83333 CDS NP_415634.1 16129079 945673 1174650..1175849 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; outer membrane-specific lipoprotein transporter subunit 1175849 lolC 945673 lolC Escherichia coli K12 outer membrane-specific lipoprotein transporter subunit NP_415634.1 1174650 D 83333 CDS NP_415635.4 90111215 945670 1175842..1176543 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; outer membrane-specific lipoprotein transporter subunit 1176543 lolD 945670 lolD Escherichia coli K12 outer membrane-specific lipoprotein transporter subunit NP_415635.4 1175842 D 83333 CDS NP_415636.1 16129081 945665 1176543..1177787 1 NC_000913.2 putative kinase; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; outer membrane-specific lipoprotein transporter subunit 1177787 lolE 945665 lolE Escherichia coli K12 outer membrane-specific lipoprotein transporter subunit NP_415636.1 1176543 D 83333 CDS NP_415637.1 16129082 945664 1177816..1178727 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; N-acetyl-D-glucosamine kinase 1178727 nagK 945664 nagK Escherichia coli K12 N-acetyl-D-glucosamine kinase NP_415637.1 1177816 D 83333 CDS NP_415638.1 16129083 945687 1178743..1179582 1 NC_000913.2 putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; deacetylase of acetyl-CoA synthetase, NAD-dependent 1179582 cobB 945687 cobB Escherichia coli K12 deacetylase of acetyl-CoA synthetase, NAD-dependent NP_415638.1 1178743 D 83333 CDS NP_415639.1 16129084 945685 complement(1179702..1180490) 1 NC_000913.2 predicted inner membrane protein 1180490 ycfZ 945685 ycfZ Escherichia coli K12 predicted inner membrane protein NP_415639.1 1179702 R 83333 CDS NP_415640.2 90111216 945684 complement(1180487..1180948) 1 NC_000913.2 predicted inner membrane protein 1180948 ymfA 945684 ymfA Escherichia coli K12 predicted inner membrane protein NP_415640.2 1180487 R 83333 CDS NP_415641.1 16129086 945682 complement(1181006..1182052) 1 NC_000913.2 spermidine/putrescine periplasmic transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit 1182052 potD 945682 potD Escherichia coli K12 polyamine transporter subunit NP_415641.1 1181006 R 83333 CDS NP_415642.1 16129087 945691 complement(1182049..1182843) 1 NC_000913.2 spermidine/putrescine transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit 1182843 potC 945691 potC Escherichia coli K12 polyamine transporter subunit NP_415642.1 1182049 R 83333 CDS NP_415643.3 162135921 945692 complement(1182840..1183667) 1 NC_000913.2 spermidine/putrescine transport system permease; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit 1183667 potB 945692 potB Escherichia coli K12 polyamine transporter subunit NP_415643.3 1182840 R 83333 CDS NP_415644.1 16129089 946323 complement(1183681..1184817) 1 NC_000913.2 ATP-binding component of spermidine/putrescine transport; GO_component: cytoplasm [goid 0005737]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: amine catabolic process [goid 0009310]; polyamine transporter subunit 1184817 potA 946323 potA Escherichia coli K12 polyamine transporter subunit NP_415644.1 1183681 R 83333 CDS NP_415645.1 16129090 946333 1185067..1186293 1 NC_000913.2 putative peptidase T; peptidase T 1186293 pepT 946333 pepT Escherichia coli K12 peptidase T NP_415645.1 1185067 D 83333 CDS NP_415646.4 90111217 945391 complement(1186342..1187463) 1 NC_000913.2 conserved protein 1187463 ycfD 945391 ycfD Escherichia coli K12 conserved protein NP_415646.4 1186342 R 83333 CDS NP_415647.1 16129092 946326 complement(1187539..1188999) 1 NC_000913.2 sensor protein PhoQ; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-compoent regulatory system with PhoP 1188999 phoQ 946326 phoQ Escherichia coli K12 sensory histidine kinase in two-compoent regulatory system with PhoP NP_415647.1 1187539 R 83333 CDS NP_415648.1 16129093 945697 complement(1188999..1189670) 1 NC_000913.2 transcriptional regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with PhoQ 1189670 phoP 945697 phoP Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with PhoQ NP_415648.1 1188999 R 83333 CDS NP_415649.1 16129094 945695 complement(1189839..1191209) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; adenylosuccinate lyase 1191209 purB 945695 purB Escherichia coli K12 adenylosuccinate lyase NP_415649.1 1189839 R 83333 CDS NP_415650.1 16129095 945693 complement(1191213..1191854) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lysogenization regulator 1191854 hflD 945693 hflD Escherichia coli K12 predicted lysogenization regulator NP_415650.1 1191213 R 83333 CDS NP_415651.4 90111218 945690 complement(1191890..1192996) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1192996 mnmA 945690 mnmA Escherichia coli K12 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase NP_415651.4 1191890 R 83333 CDS NP_415652.1 16129097 945689 complement(1193050..1193511) 1 NC_000913.2 bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase 1193511 nudJ 945689 nudJ Escherichia coli K12 bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase NP_415652.1 1193050 R 83333 CDS NP_415653.4 162135898 945701 complement(1193521..1194174) 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridine synthase 1194174 rluE 945701 rluE Escherichia coli K12 23S rRNA pseudouridine synthase NP_415653.4 1193521 R 83333 CDS NP_415654.1 16129099 945702 1194346..1195596 1 NC_000913.2 isocitrate dehydrogenase, specific for NADP+; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: anaerobic respiration [goid 0009061]; e14 prophage; isocitrate dehydrogenase, specific for NADP+ 1195596 icd 945702 icd Escherichia coli K12 e14 prophage; isocitrate dehydrogenase, specific for NADP+ NP_415654.1 1194346 D 83333 CDS NP_415655.1 16129100 945329 complement(1196090..1196755) 1 NC_000913.2 e14 prophage; predicted SAM-dependent methyltransferase 1196755 ymfD 945329 ymfD Escherichia coli K12 e14 prophage; predicted SAM-dependent methyltransferase NP_415655.1 1196090 R 83333 CDS NP_415656.1 16129101 946722 complement(1196756..1197460) 1 NC_000913.2 e14 prophage; predicted inner membrane protein 1197460 ymfE 946722 ymfE Escherichia coli K12 e14 prophage; predicted inner membrane protein NP_415656.1 1196756 R 83333 CDS NP_415657.1 16129102 948421 1197918..1198811 1 NC_000913.2 phage T4 late gene expression; at locus of e14 element; e14 prophage; cell death peptidase, inhibitor of T4 late gene expression 1198811 lit 948421 lit Escherichia coli K12 e14 prophage; cell death peptidase, inhibitor of T4 late gene expression NP_415657.1 1197918 D 83333 CDS NP_415658.1 16129103 948034 complement(1198902..1200029) 1 NC_000913.2 prophage e14 integrase; e14 prophage; predicted integrase 1200029 intE 948034 intE Escherichia coli K12 e14 prophage; predicted integrase NP_415658.1 1198902 R 83333 CDS NP_415659.1 16129104 945705 complement(1200010..1200255) 1 NC_000913.2 e14 prophage; predicted excisionase 1200255 xisE 945705 xisE Escherichia coli K12 e14 prophage; predicted excisionase NP_415659.1 1200010 R 83333 CDS NP_415661.2 90111220 945712 1200720..1201061 1 NC_000913.2 e14 prophage; predicted protein 1201061 ymfI 945712 ymfI Escherichia coli K12 e14 prophage; predicted protein NP_415661.2 1200720 D 83333 CDS NP_415662.2 90111221 945718 complement(1200999..1201307) 1 NC_000913.2 e14 prophage; predicted protein 1201307 ymfJ 945718 ymfJ Escherichia coli K12 e14 prophage; predicted protein NP_415662.2 1200999 R 83333 CDS NP_415663.1 16129108 945719 complement(1201482..1202156) 1 NC_000913.2 e14 prophage; repressor protein phage e14 1202156 ymfK 945719 ymfK Escherichia coli K12 e14 prophage; repressor protein phage e14 NP_415663.1 1201482 R 83333 CDS NP_415664.2 90111222 945720 1202247..1202447 1 NC_000913.2 e14 prophage; predicted DNA-binding transcriptional regulator 1202447 ymfT 945720 ymfT Escherichia coli K12 e14 prophage; predicted DNA-binding transcriptional regulator NP_415664.2 1202247 D 83333 CDS NP_415665.2 145698241 945717 1202491..1203048 1 NC_000913.2 e14 prophage; predicted DNA-binding transcriptional regulator 1203048 ymfL 945717 ymfL Escherichia coli K12 e14 prophage; predicted DNA-binding transcriptional regulator NP_415665.2 1202491 D 83333 CDS NP_415666.1 16129111 945715 1203045..1203383 1 NC_000913.2 e14 prophage; predicted protein 1203383 ymfM 945715 ymfM Escherichia coli K12 e14 prophage; predicted protein NP_415666.1 1203045 D 83333 CDS NP_415667.1 16129112 945708 1203393..1204760 1 NC_000913.2 e14 prophage; predicted DNA-binding transcriptional regulator 1204760 ymfN 945708 ymfN Escherichia coli K12 e14 prophage; predicted DNA-binding transcriptional regulator NP_415667.1 1203393 D 83333 CDS NP_415668.1 16129113 945700 1204772..1204954 1 NC_000913.2 e14 prophage; predicted protein 1204954 ymfR 945700 ymfR Escherichia coli K12 e14 prophage; predicted protein NP_415668.1 1204772 D 83333 CDS b1151 945698 1204954..1205365 1 NC_000913.2 e14 prophage; conserved protein; 1205365 ymfO 945698 ymfO Escherichia coli K12 1204954 D 83333 CDS b1152 945703 1205366..1206145 1 NC_000913.2 pseudogene, e14 prophage; 1206145 ymfP 945703 ymfP Escherichia coli K12 1205366 D 83333 CDS NP_415671.1 16129116 945707 1206136..1206720 1 NC_000913.2 e14 prophage; conserved protein 1206720 ymfQ 945707 ymfQ Escherichia coli K12 e14 prophage; conserved protein NP_415671.1 1206136 D 83333 CDS NP_415672.1 16129117 945726 1206724..1207353 1 NC_000913.2 e14 prophage; predicted protein 1207353 ycfK 945726 ycfK Escherichia coli K12 e14 prophage; predicted protein NP_415672.1 1206724 D 83333 CDS NP_415673.1 16129118 945724 1207355..1207768 1 NC_000913.2 e14 prophage; predicted protein 1207768 ymfS 945724 ymfS Escherichia coli K12 e14 prophage; predicted protein NP_415673.1 1207355 D 83333 CDS NP_415674.1 16129119 945723 complement(1207740..1208342) 1 NC_000913.2 e14 prophage; predicted tail fiber assembly protein 1208342 tfaE 945723 tfaE Escherichia coli K12 e14 prophage; predicted tail fiber assembly protein NP_415674.1 1207740 R 83333 CDS b1157 945722 complement(1208342..1208842) 1 NC_000913.2 pseudogene, e14 prophage; predicted side tail fiber protein fragment; 1208842 stfE 945722 stfE Escherichia coli K12 1208342 R 83333 CDS NP_415676.1 16129121 945721 1208908..1209462 1 NC_000913.2 inversion of adjacent DNA; at locus of e14 element; e14 prophage; site-specific DNA recombinase 1209462 pinE 945721 pinE Escherichia coli K12 e14 prophage; site-specific DNA recombinase NP_415676.1 1208908 D 83333 CDS NP_415677.1 16129122 945727 1209569..1210402 1 NC_000913.2 restriction of DNA at 5-methylcytosine residues; at locus of e14 element; e14 prophage; 5-methylcytosine-specific restriction endonuclease B 1210402 mcrA 945727 mcrA Escherichia coli K12 e14 prophage; 5-methylcytosine-specific restriction endonuclease B NP_415677.1 1209569 D 83333 CDS b4519 4056026 1210636..1210800 1 NC_000913.2 conserved protein (pseudogene); GO_component: cytoplasm [goid 0005737]; 1210800 icdC 4056026 icdC Escherichia coli K12 1210636 D 83333 CDS NP_415678.1 16129123 945729 complement(1210903..1211226) 1 NC_000913.2 predicted protein 1211226 elbA 945729 elbA Escherichia coli K12 predicted protein NP_415678.1 1210903 R 83333 CDS NP_415679.1 16129124 945733 complement(1211926..1212330) 1 NC_000913.2 predicted protein 1212330 ycgX 945733 ycgX Escherichia coli K12 predicted protein NP_415679.1 1211926 R 83333 CDS NP_415680.1 16129125 945735 complement(1212551..1213282) 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1213282 ycgE 945735 ycgE Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415680.1 1212551 R 83333 CDS NP_415681.1 16129126 947592 complement(1213487..1214698) 1 NC_000913.2 predicted FAD-binding phosphodiesterase 1214698 ycgF 947592 ycgF Escherichia coli K12 predicted FAD-binding phosphodiesterase NP_415681.1 1213487 R 83333 CDS NP_415682.1 16129127 945885 1215012..1215248 1 NC_000913.2 predicted protein 1215248 ycgZ 945885 ycgZ Escherichia coli K12 predicted protein NP_415682.1 1215012 D 83333 CDS NP_415683.1 16129128 948991 1215291..1215563 1 NC_000913.2 predicted protein 1215563 ymgA 948991 ymgA Escherichia coli K12 predicted protein NP_415683.1 1215291 D 83333 CDS NP_415684.1 16129129 945340 1215592..1215858 1 NC_000913.2 predicted protein 1215858 ymgB 945340 ymgB Escherichia coli K12 predicted protein NP_415684.1 1215592 D 83333 CDS NP_415685.1 16129130 945090 1215971..1216219 1 NC_000913.2 predicted protein 1216219 ymgC 945090 ymgC Escherichia coli K12 predicted protein NP_415685.1 1215971 D 83333 CDS NP_415686.2 90111225 945738 1216551..1218074 1 NC_000913.2 putative proteases; conserved inner membrane protein 1218074 ycgG 945738 ycgG Escherichia coli K12 conserved inner membrane protein NP_415686.2 1216551 D 83333 CDS YP_588447.1 94541105 1450253 1218206..1218424 1 NC_000913.2 GO_component: integral to membrane [goid 0016021]; predicted protein 1218424 ymgF 1450253 ymgF Escherichia coli K12 predicted protein YP_588447.1 1218206 D 83333 CDS b4491 2847703 1218824..1221471 1 NC_000913.2 Probable pseudogene putative ATP-binding component of a transport system; 1221471 ycgH 2847703 ycgH Escherichia coli K12 1218824 D 83333 CDS NP_415689.2 90111226 945732 complement(1221528..1221857) 1 NC_000913.2 predicted protein 1221857 ymgD 945732 ymgD Escherichia coli K12 predicted protein NP_415689.2 1221528 R 83333 CDS NP_415690.3 145698242 945728 complement(1221867..1222151) 1 NC_000913.2 predicted protein 1222151 ymgG 945728 ymgG Escherichia coli K12 predicted protein NP_415690.3 1221867 R 83333 CDS YP_001165314.1 145698243 5061515 complement(1222213..1222386) 1 NC_000913.2 hypothetical protein 1222386 ymgI 5061515 ymgI Escherichia coli K12 hypothetical protein YP_001165314.1 1222213 R 83333 CDS YP_001165315.1 145698244 5061516 1222487..1222672 1 NC_000913.2 hypothetical protein 1222672 ymgJ 5061516 ymgJ Escherichia coli K12 hypothetical protein YP_001165315.1 1222487 D 83333 CDS b4521 1450255 join(1222787..1222894,1222894..1223130) 1 NC_000913.2 pseudogene; 1223130 ycgI 1450255 ycgI Escherichia coli K12 1222787 D 83333 CDS NP_415692.1 16129137 945740 complement(1223502..1223768) 1 NC_000913.2 cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation; GO_component: cytoplasm [goid 0005737]; cell division topological specificity factor 1223768 minE 945740 minE Escherichia coli K12 cell division topological specificity factor NP_415692.1 1223502 R 83333 CDS NP_415693.1 16129138 945741 complement(1223772..1224584) 1 NC_000913.2 cell division inhibitor, a membrane ATPase, activates minC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane ATPase of the MinC-MinD-MinE system 1224584 minD 945741 minD Escherichia coli K12 membrane ATPase of the MinC-MinD-MinE system NP_415693.1 1223772 R 83333 CDS NP_415694.1 16129139 945744 complement(1224608..1225303) 1 NC_000913.2 cell division inhibitor, inhibits ftsZ ring formation; GO_component: cytoplasm [goid 0005737]; cell division inhibitor 1225303 minC 945744 minC Escherichia coli K12 cell division inhibitor NP_415694.1 1224608 R 83333 CDS NP_415695.1 16129140 946155 1225823..1226191 1 NC_000913.2 predicted protein 1226191 ycgJ 946155 ycgJ Escherichia coli K12 predicted protein NP_415695.1 1225823 D 83333 CDS NP_415696.1 16129141 946963 complement(1226294..1226695) 1 NC_000913.2 predicted protein 1226695 ycgK 946963 ycgK Escherichia coli K12 predicted protein NP_415696.1 1226294 R 83333 CDS NP_415697.3 49176083 946226 1226904..1227230 1 NC_000913.2 conserved protein 1227230 ycgL 946226 ycgL Escherichia coli K12 conserved protein NP_415697.3 1226904 D 83333 CDS NP_415698.1 16129143 946115 1227302..1227961 1 NC_000913.2 putative isomerase; predicted isomerase/hydrolase 1227961 ycgM 946115 ycgM Escherichia coli K12 predicted isomerase/hydrolase NP_415698.1 1227302 D 83333 CDS NP_415699.5 145698245 945804 1228038..1228499 1 NC_000913.2 conserved protein 1228499 ycgN 945804 ycgN Escherichia coli K12 conserved protein NP_415699.5 1228038 D 83333 CDS NP_415700.4 162135899 945745 complement(1228706..1229617) 1 NC_000913.2 GO_component: extracellular region [goid 0005576]; hemolysin E 1229617 hlyE 945745 hlyE Escherichia coli K12 hemolysin E NP_415700.4 1228706 R 83333 CDS NP_415701.1 16129146 945746 1229990..1230409 1 NC_000913.2 SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: transcription [goid 0006350]; GO_process: SOS response [goid 0009432]; DNA polymerase V, subunit D 1230409 umuD 945746 umuD Escherichia coli K12 DNA polymerase V, subunit D NP_415701.1 1229990 D 83333 CDS NP_415702.1 16129147 946359 1230409..1231677 1 NC_000913.2 SOS mutagenesis and repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA polymerase V, subunit C 1231677 umuC 946359 umuC Escherichia coli K12 DNA polymerase V, subunit C NP_415702.1 1230409 D 83333 CDS NP_415703.3 49176085 946344 complement(1231723..1232253) 1 NC_000913.2 reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella; GO_component: flagellum [goid 0019861]; GO_component: fimbrium [goid 0009289]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I 1232253 dsbB 946344 dsbB Escherichia coli K12 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I NP_415703.3 1231723 R 83333 CDS NP_415704.1 16129149 944822 complement(1232399..1233940) 1 NC_000913.2 Na+/H+ antiporter, pH independent; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to pH [goid 0009268]; sodium:proton antiporter 1233940 nhaB 944822 nhaB Escherichia coli K12 sodium:proton antiporter NP_415704.1 1232399 R 83333 CDS NP_415705.1 16129150 948652 1234161..1234880 1 NC_000913.2 negative regulator for fad regulon, and positive activator of fabA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator of fatty acid metabolism 1234880 fadR 948652 fadR Escherichia coli K12 DNA-binding transcriptional dual regulator of fatty acid metabolism NP_415705.1 1234161 D 83333 CDS NP_415706.1 16129151 946365 complement(1234932..1236464) 1 NC_000913.2 conserved protein 1236464 ycgB 946365 ycgB Escherichia coli K12 conserved protein NP_415706.1 1234932 R 83333 CDS NP_415707.1 16129152 945752 1236794..1238092 1 NC_000913.2 D-amino acid dehydrogenase subunit; GO_process: amino acid catabolic process [goid 0009063]; D-amino acid dehydrogenase 1238092 dadA 945752 dadA Escherichia coli K12 D-amino acid dehydrogenase NP_415707.1 1236794 D 83333 CDS NP_415708.1 16129153 945754 1238102..1239172 1 NC_000913.2 alanine racemase 2, catabolic; GO_process: amino acid catabolic process [goid 0009063]; GO_process: alanine biosynthetic process [goid 0006523]; alanine racemase 2, PLP-binding 1239172 dadX 945754 dadX Escherichia coli K12 alanine racemase 2, PLP-binding NP_415708.1 1238102 D 83333 CDS NP_415709.2 90111230 945755 complement(1239558..1241294) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cation/proton antiporter 1241294 cvrA 945755 cvrA Escherichia coli K12 predicted cation/proton antiporter NP_415709.2 1239558 R 83333 CDS NP_415710.1 16129155 945756 complement(1241389..1242303) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; L,D-carboxypeptidase A 1242303 ldcA 945756 ldcA Escherichia coli K12 L,D-carboxypeptidase A NP_415710.1 1241389 R 83333 CDS NP_415711.2 90111231 945655 1242403..1243014 1 NC_000913.2 murein transglycosylase E; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; lytic murein endotransglycosylase E 1243014 emtA 945655 emtA Escherichia coli K12 lytic murein endotransglycosylase E NP_415711.2 1242403 D 83333 CDS NP_415712.1 16129157 947609 complement(1243016..1243750) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; protein involved in flagellar function 1243750 ycgR 947609 ycgR Escherichia coli K12 protein involved in flagellar function NP_415712.1 1243016 R 83333 CDS NP_415713.1 16129158 945760 1243951..1244205 1 NC_000913.2 transglycosylase asociated protein; predicted inner membrane protein 1244205 ymgE 945760 ymgE Escherichia coli K12 predicted inner membrane protein NP_415713.1 1243951 D 83333 CDS NP_415714.1 16129159 945761 1244383..1244823 1 NC_000913.2 predicted protein 1244823 ycgY 945761 ycgY Escherichia coli K12 predicted protein NP_415714.1 1244383 D 83333 CDS NP_415715.1 16129160 945757 complement(1244902..1246599) 1 NC_000913.2 trehalase, periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: glucose metabolic process [goid 0006006]; GO_process: response to osmotic stress [goid 0006970]; periplasmic trehalase 1246599 treA 945757 treA Escherichia coli K12 periplasmic trehalase NP_415715.1 1244902 R 83333 CDS NP_415716.3 145698246 945749 complement(1246919..1248340) 1 NC_000913.2 PTS hybrid protein; fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component 1248340 dhaM 945749 dhaM Escherichia coli K12 fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component NP_415716.3 1246919 R 83333 CDS NP_415717.1 16129162 945748 complement(1248348..1248980) 1 NC_000913.2 dihydroxyacetone kinase, C-terminal domain 1248980 dhaL 945748 dhaL Escherichia coli K12 dihydroxyacetone kinase, C-terminal domain NP_415717.1 1248348 R 83333 CDS NP_415718.6 162135900 945747 complement(1248991..1250061) 1 NC_000913.2 dihydroxyacetone kinase, N-terminal domain 1250061 dhaK 945747 dhaK Escherichia coli K12 dihydroxyacetone kinase, N-terminal domain NP_415718.6 1248991 R 83333 CDS NP_415719.2 90111234 945743 1250289..1252208 1 NC_000913.2 GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator, dihydroxyacetone 1252208 dhaR 945743 dhaR Escherichia coli K12 predicted DNA-binding transcriptional regulator, dihydroxyacetone NP_415719.2 1250289 D 83333 CDS NP_415720.1 16129165 945767 complement(1252308..1255175) 1 NC_000913.2 putative adhesion and penetration protein; GO_component: cell outer membrane [goid 0009279]; predicted adhesin 1255175 ycgV 945767 ycgV Escherichia coli K12 predicted adhesin NP_415720.1 1252308 R 83333 CDS NP_415721.1 16129166 945769 complement(1255944..1257035) 1 NC_000913.2 putative GTP-binding protein; predicted GTP-binding protein 1257035 ychF 945769 ychF Escherichia coli K12 predicted GTP-binding protein NP_415721.1 1255944 R 83333 CDS NP_415722.1 16129167 945765 complement(1257152..1257736) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; peptidyl-tRNA hydrolase 1257736 pth 945765 pth Escherichia coli K12 peptidyl-tRNA hydrolase NP_415722.1 1257152 R 83333 CDS NP_415723.1 16129168 945762 1258014..1258292 1 NC_000913.2 predicted inner membrane protein 1258292 ychH 945762 ychH Escherichia coli K12 predicted inner membrane protein NP_415723.1 1258014 D 83333 CDS NP_415724.2 90111235 945770 complement(1258347..1260026) 1 NC_000913.2 putative sulfate transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1260026 ychM 945770 ychM Escherichia coli K12 predicted transporter NP_415724.2 1258347 R 83333 CDS NP_415725.1 16129170 945772 complement(1260151..1261098) 1 NC_000913.2 phosphoribosylpyrophosphate synthetase; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; phosphoribosylpyrophosphate synthase 1261098 prs 945772 prs Escherichia coli K12 phosphoribosylpyrophosphate synthase NP_415725.1 1260151 R 83333 CDS NP_415726.1 16129171 945774 complement(1261249..1262100) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 4-diphosphocytidyl-2-C-methylerythritol kinase 1262100 ispE 945774 ispE Escherichia coli K12 4-diphosphocytidyl-2-C-methylerythritol kinase NP_415726.1 1261249 R 83333 CDS NP_415727.1 16129172 945775 complement(1262100..1262723) 1 NC_000913.2 outer-membrane lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; chaperone for lipoproteins 1262723 lolB 945775 lolB Escherichia coli K12 chaperone for lipoproteins NP_415727.1 1262100 R 83333 CDS NP_415728.1 16129173 945777 1262937..1264193 1 NC_000913.2 glutamyl-tRNA reductase; GO_component: cytoplasm [goid 0005737]; GO_process: response to drug [goid 0042493]; glutamyl tRNA reductase 1264193 hemA 945777 hemA Escherichia coli K12 glutamyl tRNA reductase NP_415728.1 1262937 D 83333 CDS NP_415729.1 16129174 949002 1264235..1265317 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; peptide chain release factor RF-1 1265317 prfA 949002 prfA Escherichia coli K12 peptide chain release factor RF-1 NP_415729.1 1264235 D 83333 CDS NP_415730.1 16129175 945779 1265317..1266150 1 NC_000913.2 possible protoporphyrinogen oxidase; N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 1266150 prmC 945779 prmC Escherichia coli K12 N5-glutamine methyltransferase, modifies release factors RF-1 and RF-2 NP_415730.1 1265317 D 83333 CDS NP_415731.1 16129176 945781 1266147..1266539 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 1266539 ychQ 945781 ychQ Escherichia coli K12 predicted transcriptional regulator NP_415731.1 1266147 D 83333 CDS NP_415732.1 16129177 945784 1266543..1267352 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 1267352 ychA 945784 ychA Escherichia coli K12 predicted transcriptional regulator NP_415732.1 1266543 D 83333 CDS NP_415733.1 16129178 945785 1267388..1268242 1 NC_000913.2 2-dehydro-3-deoxyphosphooctulonate aldolase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: K antigen biosynthetic process [goid 0009248]; 3-deoxy-D-manno-octulosonate 8-phosphate synthase 1268242 kdsA 945785 kdsA Escherichia coli K12 3-deoxy-D-manno-octulosonate 8-phosphate synthase NP_415733.1 1267388 D 83333 CDS YP_025297.1 49176087 2847733 complement(1268391..1268498) 1 NC_000913.2 small toxic polypeptide; toxic polypeptide, small 1268498 ldrA 2847733 ldrA Escherichia coli K12 toxic polypeptide, small YP_025297.1 1268391 R 83333 CDS YP_025298.1 49176088 2847735 complement(1268926..1269033) 1 NC_000913.2 small toxic polypeptide; toxic polypeptide, small 1269033 ldrB 2847735 ldrB Escherichia coli K12 toxic polypeptide, small YP_025298.1 1268926 R 83333 CDS YP_025299.1 49176089 2847775 complement(1269461..1269568) 1 NC_000913.2 small toxic polypeptide; toxic polypeptide, small 1269568 ldrC 2847775 ldrC Escherichia coli K12 toxic polypeptide, small YP_025299.1 1269461 R 83333 CDS NP_415734.1 16129179 945790 complement(1269972..1271072) 1 NC_000913.2 sodium-calcium/proton antiporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; calcium/sodium:proton antiporter 1271072 chaA 945790 chaA Escherichia coli K12 calcium/sodium:proton antiporter NP_415734.1 1269972 R 83333 CDS NP_415735.1 16129180 945792 1271342..1271572 1 NC_000913.2 cation transport regulator; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; predicted cation regulator 1271572 chaB 945792 chaB Escherichia coli K12 predicted cation regulator NP_415735.1 1271342 D 83333 CDS NP_415736.2 145698247 945793 1271730..1272425 1 NC_000913.2 cation transport regulator; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; regulatory protein for cation transport 1272425 chaC 945793 chaC Escherichia coli K12 regulatory protein for cation transport NP_415736.2 1271730 D 83333 CDS NP_415737.1 16129182 945794 complement(1272469..1272822) 1 NC_000913.2 conserved protein 1272822 ychN 945794 ychN Escherichia coli K12 conserved protein NP_415737.1 1272469 R 83333 CDS NP_415738.2 145698248 945801 1273007..1274401 1 NC_000913.2 conserved protein, invasin-like; predicted invasin 1274401 ychO 945801 ychO Escherichia coli K12 predicted invasin NP_415738.2 1273007 D 83333 CDS NP_415739.1 16129184 945795 complement(1274402..1275052) 1 NC_000913.2 pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) 1275052 narL 945795 narL Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) NP_415739.1 1274402 R 83333 CDS NP_415740.1 16129185 945788 complement(1275045..1276841) 1 NC_000913.2 nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with NarL 1276841 narX 945788 narX Escherichia coli K12 sensory histidine kinase in two-component regulatory system with NarL NP_415740.1 1275045 R 83333 CDS NP_415741.1 16129186 945783 1277180..1278571 1 NC_000913.2 nitrite extrusion protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrate/nitrite transporter 1278571 narK 945783 narK Escherichia coli K12 nitrate/nitrite transporter NP_415741.1 1277180 D 83333 CDS NP_415742.1 16129187 945782 1279087..1282830 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 1, alpha subunit 1282830 narG 945782 narG Escherichia coli K12 nitrate reductase 1, alpha subunit NP_415742.1 1279087 D 83333 CDS NP_415743.1 16129188 945780 1282827..1284365 1 NC_000913.2 nitrate reductase 1, beta subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 1, beta (Fe-S) subunit 1284365 narH 945780 narH Escherichia coli K12 nitrate reductase 1, beta (Fe-S) subunit NP_415743.1 1282827 D 83333 CDS NP_415744.1 16129189 945807 1284362..1285072 1 NC_000913.2 nitrate reductase 1, delta subunit, assembly function; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 1285072 narJ 945807 narJ Escherichia coli K12 molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1 NP_415744.1 1284362 D 83333 CDS NP_415745.1 16129190 945808 1285072..1285749 1 NC_000913.2 nitrate reductase 1, cytochrome b(NR), gamma subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrate reductase 1, gamma (cytochrome b(NR)) subunit 1285749 narI 945808 narI Escherichia coli K12 nitrate reductase 1, gamma (cytochrome b(NR)) subunit NP_415745.1 1285072 D 83333 CDS NP_415746.1 16129191 945809 1285932..1286207 1 NC_000913.2 predicted protein 1286207 ychS 945809 ychS Escherichia coli K12 predicted protein NP_415746.1 1285932 D 83333 CDS NP_415747.2 145698249 946224 complement(1286310..1286399) 1 NC_000913.2 a protamine-like protein; GO_component: cytoplasm [goid 0005737]; predicted protamine-like protein 1286399 tpr 946224 tpr Escherichia coli K12 predicted protamine-like protein NP_415747.2 1286310 R 83333 CDS NP_415748.1 16129193 945827 complement(1287005..1287847) 1 NC_000913.2 formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis; GO_component: cytoplasm [goid 0005737]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; formyltetrahydrofolate hydrolase 1287847 purU 945827 purU Escherichia coli K12 formyltetrahydrofolate hydrolase NP_415748.1 1287005 R 83333 CDS NP_415749.1 16129194 945828 complement(1287897..1288355) 1 NC_000913.2 conserved protein 1288355 ychJ 945828 ychJ Escherichia coli K12 conserved protein NP_415749.1 1287897 R 83333 CDS NP_415750.1 16129195 945725 1288429..1289373 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved protein 1289373 rssA 945725 rssA Escherichia coli K12 conserved protein NP_415750.1 1288429 D 83333 CDS NP_415751.1 16129196 945855 1289465..1290478 1 NC_000913.2 Hnr protein; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; response regulator of RpoS 1290478 rssB 945855 rssB Escherichia coli K12 response regulator of RpoS NP_415751.1 1289465 D 83333 CDS NP_415752.1 16129197 945730 1290680..1291588 1 NC_000913.2 GO_process: galactose metabolic process [goid 0006012]; GO_process: glucose metabolic process [goid 0006006]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: response to desiccation [goid 0009269]; glucose-1-phosphate uridylyltransferase 1291588 galU 945730 galU Escherichia coli K12 glucose-1-phosphate uridylyltransferase NP_415752.1 1290680 D 83333 CDS NP_415753.1 16129198 945829 complement(1291732..1292145) 1 NC_000913.2 DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; GO_process: taxis [goid 0042330]; global DNA-binding transcriptional dual regulator H-NS 1292145 hns 945829 hns Escherichia coli K12 global DNA-binding transcriptional dual regulator H-NS NP_415753.1 1291732 R 83333 CDS NP_415754.1 16129199 945834 1292750..1293367 1 NC_000913.2 thymidine kinase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidine kinase/deoxyuridine kinase 1293367 tdk 945834 tdk Escherichia coli K12 thymidine kinase/deoxyuridine kinase NP_415754.1 1292750 D 83333 CDS b4573 4056037 complement(join(1293794..1294215,1294215..1294361,1294363..1294545)) 1 NC_000913.2 pseudogene, transposase homolog; 1294545 ychG 4056037 ychG Escherichia coli K12 1293794 R 83333 CDS NP_415757.1 16129202 945837 complement(1294669..1297344) 1 NC_000913.2 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase; GO_process: fermentation [goid 0006113]; fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase 1297344 adhE 945837 adhE Escherichia coli K12 fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase NP_415757.1 1294669 R 83333 CDS NP_415758.1 16129203 945836 1297821..1298468 1 NC_000913.2 putative channel protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 1298468 ychE 945836 ychE Escherichia coli K12 predicted inner membrane protein NP_415758.1 1297821 D 83333 CDS NP_415759.1 16129204 945830 1299206..1300837 1 NC_000913.2 oligopeptide transport; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan metabolic process [goid 0000270]; GO_process: protein folding [goid 0006457]; oligopeptide transporter subunit 1300837 oppA 945830 oppA Escherichia coli K12 oligopeptide transporter subunit NP_415759.1 1299206 D 83333 CDS NP_415760.1 16129205 945823 1300923..1301843 1 NC_000913.2 oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1301843 oppB 945823 oppB Escherichia coli K12 oligopeptide transporter subunit NP_415760.1 1300923 D 83333 CDS NP_415761.1 16129206 945810 1301858..1302766 1 NC_000913.2 homolog of Salmonella oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1302766 oppC 945810 oppC Escherichia coli K12 oligopeptide transporter subunit NP_415761.1 1301858 D 83333 CDS YP_025300.1 49176090 945802 1302778..1303791 1 NC_000913.2 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1303791 oppD 945802 oppD Escherichia coli K12 oligopeptide transporter subunit YP_025300.1 1302778 D 83333 CDS NP_415763.1 16129208 945818 1303788..1304792 1 NC_000913.2 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan metabolic process [goid 0000270]; oligopeptide transporter subunit 1304792 oppF 945818 oppF Escherichia coli K12 oligopeptide transporter subunit NP_415763.1 1303788 D 83333 CDS NP_415764.4 90111236 945819 complement(1304845..1305174) 1 NC_000913.2 predicted protein 1305174 yciU 945819 yciU Escherichia coli K12 predicted protein NP_415764.4 1304845 R 83333 CDS NP_415765.1 16129210 945821 complement(1305209..1306669) 1 NC_000913.2 cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; GO_process: response to drug [goid 0042493]; cardiolipin synthase 1 1306669 cls 945821 cls Escherichia coli K12 cardiolipin synthase 1 NP_415765.1 1305209 R 83333 CDS YP_001165316.1 145698250 5061502 1306812..1306985 1 NC_000913.2 hypothetical protein 1306985 yciY 5061502 yciY Escherichia coli K12 hypothetical protein YP_001165316.1 1306812 D 83333 CDS NP_415766.1 16129211 945841 complement(1307040..1308293) 1 NC_000913.2 putative potassium channel protein (VIC family); GO_component: organelle inner membrane [goid 0019866]; GO_function: voltage-gated ion channel activity [goid 0005244]; voltage-gated potassium channel 1308293 kch 945841 kch Escherichia coli K12 voltage-gated potassium channel NP_415766.1 1307040 R 83333 CDS NP_415767.2 90111237 949085 complement(1308593..1308889) 1 NC_000913.2 predicted enzyme 1308889 yciI 949085 yciI Escherichia coli K12 predicted enzyme NP_415767.2 1308593 R 83333 CDS NP_415768.1 16129213 945843 1309113..1309832 1 NC_000913.2 energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane spanning protein in TonB-ExbB-ExbD complex 1309832 tonB 945843 tonB Escherichia coli K12 membrane spanning protein in TonB-ExbB-ExbD complex NP_415768.1 1309113 D 83333 CDS NP_415769.1 16129214 946634 complement(1309872..1310270) 1 NC_000913.2 predicted hydrolase 1310270 yciA 946634 yciA Escherichia coli K12 predicted hydrolase NP_415769.1 1309872 R 83333 CDS NP_415770.1 16129215 946228 complement(1310375..1310914) 1 NC_000913.2 predicted inner membrane protein 1310914 yciB 946228 yciB Escherichia coli K12 predicted inner membrane protein NP_415770.1 1310375 R 83333 CDS NP_415771.1 16129216 945844 complement(1310944..1311687) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 1311687 yciC 945844 yciC Escherichia coli K12 predicted inner membrane protein NP_415771.1 1310944 R 83333 CDS NP_415772.1 16129217 945128 1312044..1312682 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane protein W 1312682 ompW 945128 ompW Escherichia coli K12 outer membrane protein W NP_415772.1 1312044 D 83333 CDS NP_415773.1 16129218 946871 complement(1312742..1313248) 1 NC_000913.2 conserved protein 1313248 yciE 946871 yciE Escherichia coli K12 conserved protein NP_415773.1 1312742 R 83333 CDS NP_415774.1 16129219 947133 complement(1313294..1313794) 1 NC_000913.2 putative structural proteins; conserved protein 1313794 yciF 947133 yciF Escherichia coli K12 conserved protein NP_415774.1 1313294 R 83333 CDS NP_415775.4 90111238 947489 complement(1313880..1314059) 1 NC_000913.2 predicted protein 1314059 yciG 947489 yciG Escherichia coli K12 predicted protein NP_415775.4 1313880 R 83333 CDS NP_415776.1 16129221 946204 complement(1314440..1315246) 1 NC_000913.2 tryptophan synthase, alpha protein; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan synthase, alpha subunit 1315246 trpA 946204 trpA Escherichia coli K12 tryptophan synthase, alpha subunit NP_415776.1 1314440 R 83333 CDS NP_415777.1 16129222 945768 complement(1315246..1316439) 1 NC_000913.2 tryptophan synthase, beta protein; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan synthase, beta subunit 1316439 trpB 945768 trpB Escherichia coli K12 tryptophan synthase, beta subunit NP_415777.1 1315246 R 83333 CDS NP_415778.2 90111239 945519 complement(1316451..1317809) 1 NC_000913.2 N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase 1317809 trpC 945519 trpC Escherichia coli K12 fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase NP_415778.2 1316451 R 83333 CDS NP_415779.1 16129224 945109 complement(1317813..1319408) 1 NC_000913.2 anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase; GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase 1319408 trpD 945109 trpD Escherichia coli K12 fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase NP_415779.1 1317813 R 83333 CDS NP_415780.1 16129225 945846 complement(1319408..1320970) 1 NC_000913.2 anthranilate synthase component I; GO_process: tryptophan biosynthetic process [goid 0000162]; component I of anthranilate synthase 1320970 trpE 945846 trpE Escherichia coli K12 component I of anthranilate synthase NP_415780.1 1319408 R 83333 CDS NP_415781.1 16129226 945856 complement(1321062..1321106) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: tryptophan biosynthetic process [goid 0000162]; trp operon leader peptide 1321106 trpL 945856 trpL Escherichia coli K12 trp operon leader peptide NP_415781.1 1321062 R 83333 CDS NP_415782.1 16129227 945857 1321244..1322125 1 NC_000913.2 putative enzymes; conserved protein 1322125 trpH 945857 trpH Escherichia coli K12 conserved protein NP_415782.1 1321244 D 83333 CDS NP_415783.6 162135901 945854 1322122..1322742 1 NC_000913.2 conserved protein 1322742 yciO 945854 yciO Escherichia coli K12 conserved protein NP_415783.6 1322122 D 83333 CDS NP_415784.1 16129229 945850 1322770..1324665 1 NC_000913.2 predicted inner membrane protein 1324665 yciQ 945850 yciQ Escherichia coli K12 predicted inner membrane protein NP_415784.1 1322770 D 83333 CDS NP_415785.1 16129230 945840 1324876..1325751 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridylate synthase 1325751 rluB 945840 rluB Escherichia coli K12 23S rRNA pseudouridylate synthase NP_415785.1 1324876 D 83333 CDS NP_415786.1 16129231 945839 complement(1325791..1326381) 1 NC_000913.2 cob(I)alamin adenolsyltransferase; GO_component: cytoplasm [goid 0005737]; cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase 1326381 btuR 945839 btuR Escherichia coli K12 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase NP_415786.1 1325791 R 83333 CDS NP_415787.1 16129232 945838 complement(1326378..1327136) 1 NC_000913.2 putative oxidoreductase; predicted oxoacyl-(acyl carrier protein) reductase, EmrKY-TolC system 1327136 yciK 945838 yciK Escherichia coli K12 predicted oxoacyl-(acyl carrier protein) reductase, EmrKY-TolC system NP_415787.1 1326378 R 83333 CDS NP_415788.1 16129233 945858 1327356..1328405 1 NC_000913.2 putative protease; predicted inner membrane peptidase 1328405 sohB 945858 sohB Escherichia coli K12 predicted inner membrane peptidase NP_415788.1 1327356 D 83333 CDS NP_415789.1 16129234 945860 complement(1328441..1328692) 1 NC_000913.2 predicted protein 1328692 yciN 945860 yciN Escherichia coli K12 predicted protein NP_415789.1 1328441 R 83333 CDS NP_415790.1 16129235 945862 1329072..1331669 1 NC_000913.2 DNA topoisomerase type I, omega protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA topoisomerase I, omega subunit 1331669 topA 945862 topA Escherichia coli K12 DNA topoisomerase I, omega subunit NP_415790.1 1329072 D 83333 CDS NP_415791.1 16129236 945771 1331879..1332853 1 NC_000913.2 positive transcriptional regulator for cysteine regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: cysteine biosynthetic process [goid 0019344]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding 1332853 cysB 945771 cysB Escherichia coli K12 DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding NP_415791.1 1331879 D 83333 CDS YP_588449.1 94541107 1450256 1333184..1333312 1 NC_000913.2 hypothetical protein 1333312 ymiA 1450256 ymiA Escherichia coli K12 hypothetical protein YP_588449.1 1333184 D 83333 CDS YP_588450.2 145698251 1450257 1333315..1333482 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; hypothetical protein 1333482 yciX 1450257 yciX Escherichia coli K12 hypothetical protein YP_588450.2 1333315 D 83333 CDS NP_415792.1 16129237 946724 1333855..1336530 1 NC_000913.2 aconitate hydrase 1; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: anaerobic respiration [goid 0009061]; aconitate hydratase 1 1336530 acnA 946724 acnA Escherichia coli K12 aconitate hydratase 1 NP_415792.1 1333855 D 83333 CDS NP_415793.1 16129238 945763 complement(1336594..1337184) 1 NC_000913.2 GTP cyclohydrolase II 1337184 ribA 945763 ribA Escherichia coli K12 GTP cyclohydrolase II NP_415793.1 1336594 R 83333 CDS NP_415794.1 16129239 945863 1337354..1338118 1 NC_000913.2 non-essential phosphatidylglycerophosphate phosphatase, membrane bound; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylglycerophosphatase B 1338118 pgpB 945863 pgpB Escherichia coli K12 phosphatidylglycerophosphatase B NP_415794.1 1337354 D 83333 CDS NP_415795.1 16129240 944936 1338267..1338575 1 NC_000913.2 conserved inner membrane protein 1338575 yciS 944936 yciS Escherichia coli K12 conserved inner membrane protein NP_415795.1 1338267 D 83333 CDS NP_415796.1 16129241 944858 1338582..1339751 1 NC_000913.2 putative heat shock protein; conserved protein 1339751 yciM 944858 yciM Escherichia coli K12 conserved protein NP_415796.1 1338582 D 83333 CDS NP_415797.1 16129242 947121 1339945..1340682 1 NC_000913.2 GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; orotidine-5'-phosphate decarboxylase 1340682 pyrF 947121 pyrF Escherichia coli K12 orotidine-5'-phosphate decarboxylase NP_415797.1 1339945 D 83333 CDS NP_415798.2 90111241 947058 1340682..1341008 1 NC_000913.2 conserved protein 1341008 yciH 947058 yciH Escherichia coli K12 conserved protein NP_415798.2 1340682 D 83333 CDS NP_415799.1 16129244 945866 complement(1341134..1341352) 1 NC_000913.2 osmotically inducible lipoprotein; GO_process: response to osmotic stress [goid 0006970]; lipoprotein 1341352 osmB 945866 osmB Escherichia coli K12 lipoprotein NP_415799.1 1341134 R 83333 CDS NP_415800.1 16129245 945869 complement(1341621..1342370) 1 NC_000913.2 putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1342370 yciT 945869 yciT Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415800.1 1341621 R 83333 CDS YP_001165317.1 145698252 5061509 complement(1342460..1342633) 1 NC_000913.2 hypothetical protein 1342633 yciZ 5061509 yciZ Escherichia coli K12 hypothetical protein YP_001165317.1 1342460 R 83333 CDS NP_415801.1 16129246 945868 complement(1342781..1344766) 1 NC_000913.2 modulator of Rnase II stability 1344766 gmr 945868 gmr Escherichia coli K12 modulator of Rnase II stability NP_415801.1 1342781 R 83333 CDS NP_415802.1 16129247 945864 complement(1345002..1346936) 1 NC_000913.2 RNase II, mRNA degradation; GO_process: RNA catabolic process [goid 0006401]; ribonuclease II 1346936 rnb 945864 rnb Escherichia coli K12 ribonuclease II NP_415802.1 1345002 R 83333 CDS NP_415803.2 90111242 945859 complement(1347004..1348131) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase 1348131 yciW 945859 yciW Escherichia coli K12 predicted oxidoreductase NP_415803.2 1347004 R 83333 CDS NP_415804.1 16129249 945870 complement(1348275..1349063) 1 NC_000913.2 enoyl-[acyl-carrier-protein] reductase (NADH); GO_component: cytoplasm [goid 0005737]; enoyl-[acyl-carrier-protein] reductase, NADH-dependent 1349063 fabI 945870 fabI Escherichia coli K12 enoyl-[acyl-carrier-protein] reductase, NADH-dependent NP_415804.1 1348275 R 83333 CDS NP_415805.1 16129250 945871 complement(1349431..1349784) 1 NC_000913.2 conserved protein 1349784 ycjD 945871 ycjD Escherichia coli K12 conserved protein NP_415805.1 1349431 R 83333 CDS NP_415806.1 16129251 945335 complement(1349852..1350658) 1 NC_000913.2 putative ATP-binding protein of peptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; predicted antimicrobial peptide transporter subunit 1350658 sapF 945335 sapF Escherichia coli K12 predicted antimicrobial peptide transporter subunit NP_415806.1 1349852 R 83333 CDS NP_415807.1 16129252 946203 complement(1350660..1351652) 1 NC_000913.2 putative ATP-binding protein of peptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; predicted antimicrobial peptide transporter subunit 1351652 sapD 946203 sapD Escherichia coli K12 predicted antimicrobial peptide transporter subunit NP_415807.1 1350660 R 83333 CDS NP_415808.1 16129253 945266 complement(1351652..1352542) 1 NC_000913.2 homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted antimicrobial peptide transporter subunit 1352542 sapC 945266 sapC Escherichia coli K12 predicted antimicrobial peptide transporter subunit NP_415808.1 1351652 R 83333 CDS NP_415809.1 16129254 946191 complement(1352529..1353494) 1 NC_000913.2 homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted antimicrobial peptide transporter subunit 1353494 sapB 946191 sapB Escherichia coli K12 predicted antimicrobial peptide transporter subunit NP_415809.1 1352529 R 83333 CDS NP_415810.1 16129255 945873 complement(1353491..1355134) 1 NC_000913.2 homolog of Salmonella peptide transport periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; predicted antimicrobial peptide transporter subunit 1355134 sapA 945873 sapA Escherichia coli K12 predicted antimicrobial peptide transporter subunit NP_415810.1 1353491 R 83333 CDS NP_415811.1 16129256 945874 complement(1355447..1355692) 1 NC_000913.2 predicted protein 1355692 ymjA 945874 ymjA Escherichia coli K12 predicted protein NP_415811.1 1355447 R 83333 CDS NP_415812.4 90111243 946287 complement(1355826..1357211) 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; putrescine importer 1357211 puuP 946287 puuP Escherichia coli K12 putrescine importer NP_415812.4 1355826 R 83333 CDS NP_415813.4 90111244 946202 complement(1357514..1358932) 1 NC_000913.2 putative glutamine synthetase; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: nitrogen compound metabolic process [goid 0006807]; gamma-Glu-putrescine synthase 1358932 puuA 946202 puuA Escherichia coli K12 gamma-Glu-putrescine synthase NP_415813.4 1357514 R 83333 CDS NP_415814.4 90111245 945882 1359144..1359908 1 NC_000913.2 probable amidotransferase subunit; GO_process: amine catabolic process [goid 0009310]; gamma-Glu-GABA hydrolase 1359908 puuD 945882 puuD Escherichia coli K12 gamma-Glu-GABA hydrolase NP_415814.4 1359144 D 83333 CDS NP_415815.1 16129260 945886 1359935..1360492 1 NC_000913.2 DNA-binding transcriptional repressor 1360492 puuR 945886 puuR Escherichia coli K12 DNA-binding transcriptional repressor NP_415815.1 1359935 D 83333 CDS NP_415816.1 16129261 947003 1360767..1362254 1 NC_000913.2 aldehyde dehydrogenase, prefers NADP over NAD; GO_component: cytoplasm [goid 0005737]; GO_process: fermentation [goid 0006113]; gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent 1362254 puuC 947003 puuC Escherichia coli K12 gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent NP_415816.1 1360767 D 83333 CDS NP_415817.1 16129262 945072 1362256..1363536 1 NC_000913.2 probable oxidoreductase; gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding 1363536 puuB 945072 puuB Escherichia coli K12 gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding NP_415817.1 1362256 D 83333 CDS NP_415818.1 16129263 945446 1363574..1364839 1 NC_000913.2 4-aminobutyrate aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: amine catabolic process [goid 0009310]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GABA aminotransferase, PLP-dependent 1364839 puuE 945446 puuE Escherichia coli K12 GABA aminotransferase, PLP-dependent NP_415818.1 1363574 D 83333 CDS NP_415819.4 90111246 945683 complement(1364959..1365936) 1 NC_000913.2 psp operon transcriptional activator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 1365936 pspF 945683 pspF Escherichia coli K12 DNA-binding transcriptional activator NP_415819.4 1364959 R 83333 CDS NP_415820.1 16129265 945887 1366103..1366771 1 NC_000913.2 phage shock protein, inner membrane protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; regulatory protein for phage-shock-protein operon 1366771 pspA 945887 pspA Escherichia coli K12 regulatory protein for phage-shock-protein operon NP_415820.1 1366103 D 83333 CDS NP_415821.1 16129266 945893 1366825..1367049 1 NC_000913.2 phage shock protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator of psp operon 1367049 pspB 945893 pspB Escherichia coli K12 DNA-binding transcriptional regulator of psp operon NP_415821.1 1366825 D 83333 CDS NP_415822.1 16129267 945499 1367049..1367408 1 NC_000913.2 phage shock protein: activates phage shock-protein expression; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 1367408 pspC 945499 pspC Escherichia coli K12 DNA-binding transcriptional activator NP_415822.1 1367049 D 83333 CDS NP_415823.1 16129268 945635 1367417..1367638 1 NC_000913.2 phage shock protein; peripheral inner membrane phage-shock protein 1367638 pspD 945635 pspD Escherichia coli K12 peripheral inner membrane phage-shock protein NP_415823.1 1367417 D 83333 CDS NP_415824.1 16129269 945652 1367713..1368027 1 NC_000913.2 phage shock protein; thiosulfate:cyanide sulfurtransferase (rhodanese) 1368027 pspE 945652 pspE Escherichia coli K12 thiosulfate:cyanide sulfurtransferase (rhodanese) NP_415824.1 1367713 D 83333 CDS NP_415825.4 90111247 945659 1368240..1369919 1 NC_000913.2 putative polysaccharide hydrolase; GO_process: polysaccharide catabolic process [goid 0000272]; predicted glucosyltransferase 1369919 ycjM 945659 ycjM Escherichia coli K12 predicted glucosyltransferase NP_415825.4 1368240 D 83333 CDS NP_415826.1 16129271 945696 1369933..1371225 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily 1371225 ycjN 945696 ycjN Escherichia coli K12 predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily NP_415826.1 1369933 D 83333 CDS NP_415827.1 16129272 945888 1371246..1372127 1 NC_000913.2 putative binding-protein dependent transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 1372127 ycjO 945888 ycjO Escherichia coli K12 predicted sugar transporter subunit: membrane component of ABC superfamily NP_415827.1 1371246 D 83333 CDS NP_415828.1 16129273 945892 1372114..1372956 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 1372956 ycjP 945892 ycjP Escherichia coli K12 predicted sugar transporter subunit: membrane component of ABC superfamily NP_415828.1 1372114 D 83333 CDS NP_415829.1 16129274 945971 1372987..1374039 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1374039 ycjQ 945971 ycjQ Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_415829.1 1372987 D 83333 CDS NP_415830.2 90111248 947427 1374058..1374846 1 NC_000913.2 predicted enzyme 1374846 ycjR 947427 ycjR Escherichia coli K12 predicted enzyme NP_415830.2 1374058 D 83333 CDS NP_415831.1 16129276 948589 1374856..1375911 1 NC_000913.2 putative dehydrogenase; predicted oxidoreductase, NADH-binding 1375911 ycjS 948589 ycjS Escherichia coli K12 predicted oxidoreductase, NADH-binding NP_415831.1 1374856 D 83333 CDS NP_415832.1 16129277 945895 1375908..1378175 1 NC_000913.2 predicted hydrolase 1378175 ycjT 945895 ycjT Escherichia coli K12 predicted hydrolase NP_415832.1 1375908 D 83333 CDS NP_415833.1 16129278 945891 1378172..1378831 1 NC_000913.2 putative beta-phosphoglucomutase; predicted beta-phosphoglucomutase 1378831 ycjU 945891 ycjU Escherichia coli K12 predicted beta-phosphoglucomutase NP_415833.1 1378172 D 83333 CDS b4524 4306141 join(1378845..1379801,1379801..1379926) 1 NC_000913.2 predicted protein putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; 1379926 ycjV 4306141 ycjV Escherichia coli K12 1378845 D 83333 CDS NP_415835.1 16129280 945889 1379971..1380876 1 NC_000913.2 outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane porin 1380876 ompG 945889 ompG Escherichia coli K12 outer membrane porin NP_415835.1 1379971 D 83333 CDS NP_415836.1 16129281 945875 complement(1380987..1381985) 1 NC_000913.2 putative LACI-type transcriptional regulator; GO_component: periplasmic space [goid 0042597]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1381985 ycjW 945875 ycjW Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415836.1 1380987 R 83333 CDS NP_415837.1 16129282 945872 1382141..1383538 1 NC_000913.2 putative EC 2.1 enzymes; conserved protein with nucleoside triphosphate hydrolase domain 1383538 ycjX 945872 ycjX Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_415837.1 1382141 D 83333 CDS NP_415838.1 16129283 945878 1383535..1384596 1 NC_000913.2 conserved inner membrane protein 1384596 ycjF 945878 ycjF Escherichia coli K12 conserved inner membrane protein NP_415838.1 1383535 D 83333 CDS NP_415839.1 16129284 945879 1384744..1386285 1 NC_000913.2 transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, tyrosine-binding 1386285 tyrR 945879 tyrR Escherichia coli K12 DNA-binding transcriptional dual regulator, tyrosine-binding NP_415839.1 1384744 D 83333 CDS NP_415840.1 16129285 945880 complement(1386329..1386835) 1 NC_000913.2 thiol peroxidase; GO_component: periplasmic space [goid 0042597]; GO_process: xenobiotic metabolic process [goid 0006805]; lipid hydroperoxide peroxidase 1386835 tpx 945880 tpx Escherichia coli K12 lipid hydroperoxide peroxidase NP_415840.1 1386329 R 83333 CDS NP_415841.4 90111249 946013 1386954..1387919 1 NC_000913.2 putative muconate cycloisomerase I; L-Ala-D/L-Glu epimerase 1387919 ycjG 946013 ycjG Escherichia coli K12 L-Ala-D/L-Glu epimerase NP_415841.4 1386954 D 83333 CDS NP_415842.1 16129287 945969 complement(1387894..1388682) 1 NC_000913.2 putative carboxypeptidase; murein peptide amidase A 1388682 mpaA 945969 mpaA Escherichia coli K12 murein peptide amidase A NP_415842.1 1387894 R 83333 CDS b4525 1450258 complement(1388749..1388886) 1 NC_000913.2 pseudogene; 1388886 ymjC 1450258 ymjC Escherichia coli K12 1388749 R 83333 CDS NP_415843.1 16129288 945988 complement(1388957..1389889) 1 NC_000913.2 predicted hydrolase 1389889 ycjY 945988 ycjY Escherichia coli K12 predicted hydrolase NP_415843.1 1388957 R 83333 CDS NP_415844.1 16129289 945930 1390015..1390914 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1390914 ycjZ 945930 ycjZ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415844.1 1390015 D 83333 CDS NP_415845.2 90111250 945951 1391251..1392864 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan metabolic process [goid 0000270]; murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit 1392864 mppA 945951 mppA Escherichia coli K12 murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit NP_415845.2 1391251 D 83333 CDS NP_415846.1 16129291 945898 complement(1392915..1393946) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1393946 ynaI 945898 ynaI Escherichia coli K12 conserved inner membrane protein NP_415846.1 1392915 R 83333 CDS NP_415847.1 16129292 945896 1394100..1395116 1 NC_000913.2 IS5 transposase and trans-activator 1395116 insH 945896 insH Escherichia coli K12 IS5 transposase and trans-activator NP_415847.1 1394100 D 83333 CDS NP_415848.1 16129293 945901 1395389..1395646 1 NC_000913.2 predicted inner membrane protein 1395646 ynaJ 945901 ynaJ Escherichia coli K12 predicted inner membrane protein NP_415848.1 1395389 D 83333 CDS NP_415849.1 16129294 945904 complement(1395696..1396646) 1 NC_000913.2 stress-induced protein 1396646 uspE 945904 uspE Escherichia coli K12 stress-induced protein NP_415849.1 1395696 R 83333 CDS NP_415850.1 16129295 945908 complement(1396798..1397550) 1 NC_000913.2 transcriptional regulation of aerobic, anaerobic respiration, osmotic balance; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, global regulator of anaerobic growth 1397550 fnr 945908 fnr Escherichia coli K12 DNA-binding transcriptional dual regulator, global regulator of anaerobic growth NP_415850.1 1396798 R 83333 CDS NP_415851.1 16129296 945853 complement(1397745..1398260) 1 NC_000913.2 O-6-alkylguanine-DNA/cysteine-protein methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; O-6-alkylguanine-DNA:cysteine-protein methyltransferase 1398260 ogt 945853 ogt Escherichia coli K12 O-6-alkylguanine-DNA:cysteine-protein methyltransferase NP_415851.1 1397745 R 83333 CDS NP_415852.2 90111251 945912 complement(1398271..1399797) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cryptic aminobenzoyl-glutamate transporter 1399797 abgT 945912 abgT Escherichia coli K12 predicted cryptic aminobenzoyl-glutamate transporter NP_415852.2 1398271 R 83333 CDS NP_415853.1 16129298 945950 complement(1399834..1401279) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted peptidase, aminobenzoyl-glutamate utilization protein 1401279 abgB 945950 abgB Escherichia coli K12 predicted peptidase, aminobenzoyl-glutamate utilization protein NP_415853.1 1399834 R 83333 CDS NP_415854.4 90111252 945742 complement(1401279..1402589) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted peptidase, aminobenzoyl-glutamate utilization protein 1402589 abgA 945742 abgA Escherichia coli K12 predicted peptidase, aminobenzoyl-glutamate utilization protein NP_415854.4 1401279 R 83333 CDS NP_415855.1 16129300 945831 1402765..1403673 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1403673 abgR 945831 abgR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415855.1 1402765 D 83333 CDS NP_415856.1 16129301 945953 1404003..1404566 1 NC_000913.2 conserved protein 1404566 ydaL 945953 ydaL Escherichia coli K12 conserved protein NP_415856.1 1404003 D 83333 CDS NP_415857.2 90111253 945909 complement(1404587..1405819) 1 NC_000913.2 predicted diguanylate cyclase, GGDEF domain signalling protein 1405819 ydaM 945909 ydaM Escherichia coli K12 predicted diguanylate cyclase, GGDEF domain signalling protein NP_415857.2 1404587 R 83333 CDS NP_415858.1 16129303 945910 1406074..1407057 1 NC_000913.2 predicted Zn(II) transporter 1407057 ydaN 945910 ydaN Escherichia coli K12 predicted Zn(II) transporter NP_415858.1 1406074 D 83333 CDS NP_415859.1 16129304 947153 1407535..1408908 1 NC_000913.2 ATP-dependent RNA helicase; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ATP-dependent RNA helicase, specific for 23S rRNA 1408908 dbpA 947153 dbpA Escherichia coli K12 ATP-dependent RNA helicase, specific for 23S rRNA NP_415859.1 1407535 D 83333 CDS NP_415860.1 16129305 948967 complement(1409037..1409972) 1 NC_000913.2 predicted C32 tRNA thiolase 1409972 ttcA 948967 ttcA Escherichia coli K12 predicted C32 tRNA thiolase NP_415860.1 1409037 R 83333 CDS NP_415861.1 16129306 946976 complement(1410024..1411259) 1 NC_000913.2 Rac prophage; integrase 1411259 intR 946976 intR Escherichia coli K12 Rac prophage; integrase NP_415861.1 1410024 R 83333 CDS NP_415862.4 90111254 947399 complement(1411261..1411476) 1 NC_000913.2 putative lambdoid prophage Rac excisionase; Rac prophage; conserved protein 1411476 ydaQ 947399 ydaQ Escherichia coli K12 Rac prophage; conserved protein NP_415862.4 1411261 R 83333 CDS NP_415863.1 16129308 947504 complement(1411555..1411764) 1 NC_000913.2 Rac prophage; predicted protein 1411764 ydaC 947504 ydaC Escherichia coli K12 Rac prophage; predicted protein NP_415863.1 1411555 R 83333 CDS NP_415864.1 16129309 945914 complement(1411757..1411951) 1 NC_000913.2 restriction alleviation and modification enhancement; Rac prophage; restriction alleviation protein 1411951 lar 945914 lar Escherichia coli K12 Rac prophage; restriction alleviation protein NP_415864.1 1411757 R 83333 CDS NP_415865.1 16129310 945917 complement(1412008..1412817) 1 NC_000913.2 recombinase, DNA renaturation; Rac prophage; recombination and repair protein 1412817 recT 945917 recT Escherichia coli K12 Rac prophage; recombination and repair protein NP_415865.1 1412008 R 83333 CDS NP_415866.1 16129311 945918 complement(1412810..1415410) 1 NC_000913.2 exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease 1415410 recE 945918 recE Escherichia coli K12 Rac prophage; exonuclease VIII, 5' -> 3' specific dsDNA exonuclease NP_415866.1 1412810 R 83333 CDS NP_415867.1 16129312 945920 complement(1415512..1415787) 1 NC_000913.2 RacC protein; Rac prophage; predicted protein 1415787 racC 945920 racC Escherichia coli K12 Rac prophage; predicted protein NP_415867.1 1415512 R 83333 CDS YP_588451.1 94541109 948959 complement(1415862..1416032) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; Rac prophage; conserved protein 1416032 ydaE 948959 ydaE Escherichia coli K12 Rac prophage; conserved protein YP_588451.1 1415862 R 83333 CDS NP_415869.2 90111255 945921 complement(1416032..1416253) 1 NC_000913.2 Kil protein (killing function) of lambdoid prophage Rac; Rac prophage; inhibitor of ftsZ, killing protein 1416253 kilR 945921 kilR Escherichia coli K12 Rac prophage; inhibitor of ftsZ, killing protein NP_415869.2 1416032 R 83333 CDS NP_415870.4 90111256 945913 1416695..1417183 1 NC_000913.2 phage superinfection exclusion protein; Rac prophage; phage superinfection exclusion protein 1417183 sieB 945913 sieB Escherichia coli K12 Rac prophage; phage superinfection exclusion protein NP_415870.4 1416695 D 83333 CDS NP_415872.2 94541091 945911 complement(1417180..1417335) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; Rac prophage; predicted protein 1417335 ydaF 945911 ydaF Escherichia coli K12 Rac prophage; predicted protein NP_415872.2 1417180 R 83333 CDS NP_415873.2 90111257 945907 complement(1417346..1417480) 1 NC_000913.2 Rac prophage; predicted protein 1417480 ydaG 945907 ydaG Escherichia coli K12 Rac prophage; predicted protein NP_415873.2 1417346 R 83333 CDS NP_415874.1 16129317 945899 complement(1417789..1418265) 1 NC_000913.2 Rac prophage; predicted DNA-binding transcriptional regulator 1418265 racR 945899 racR Escherichia coli K12 Rac prophage; predicted DNA-binding transcriptional regulator NP_415874.1 1417789 R 83333 CDS NP_415875.1 16129318 945923 1418389..1418685 1 NC_000913.2 Rac prophage; predicted DNA-binding transcriptional regulator 1418685 ydaS 945923 ydaS Escherichia coli K12 Rac prophage; predicted DNA-binding transcriptional regulator NP_415875.1 1418389 D 83333 CDS NP_415876.1 16129319 945924 1418708..1419130 1 NC_000913.2 Rac prophage; predicted protein 1419130 ydaT 945924 ydaT Escherichia coli K12 Rac prophage; predicted protein NP_415876.1 1418708 D 83333 CDS NP_415877.1 16129320 945925 1419143..1420000 1 NC_000913.2 Rac prophage; conserved protein 1420000 ydaU 945925 ydaU Escherichia coli K12 Rac prophage; conserved protein NP_415877.1 1419143 D 83333 CDS NP_415878.1 16129321 945926 1420007..1420753 1 NC_000913.2 putative DNA replication factor; Rac prophage; predicted DNA replication protein 1420753 ydaV 945926 ydaV Escherichia coli K12 Rac prophage; predicted DNA replication protein NP_415878.1 1420007 D 83333 CDS b1361 945927 1420725..1421224 1 NC_000913.2 Rac prophage; predicted DNA-binding protein; 1421224 ydaW 945927 ydaW Escherichia coli K12 1420725 D 83333 CDS b1362 945928 1421225..1421668 1 NC_000913.2 pseudogene, Rac prophage; predicted defective peptidase putative Rac prophage endopeptidase; 1421668 rzpR 945928 rzpR Escherichia coli K12 1421225 D 83333 CDS YP_588452.1 94541110 1450262 1421424..1421609 1 NC_000913.2 GO_component: cell outer membrane [goid 0009279]; Rac prophage; predicted lipoprotein 1421609 rzoR 1450262 rzoR Escherichia coli K12 Rac prophage; predicted lipoprotein YP_588452.1 1421424 D 83333 CDS NP_415881.1 16129324 945932 1421806..1423263 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; Rac prophage; potassium transporter subunit 1423263 trkG 945932 trkG Escherichia coli K12 Rac prophage; potassium transporter subunit NP_415881.1 1421806 D 83333 CDS NP_415883.1 16129326 947417 1423401..1423664 1 NC_000913.2 Rac prophage; conserved protein 1423664 ynaK 947417 ynaK Escherichia coli K12 Rac prophage; conserved protein NP_415883.1 1423401 D 83333 CDS b1366 946208 1423654..1424106 1 NC_000913.2 pseudogene, Rac prophage; 1424106 ydaY 946208 ydaY Escherichia coli K12 1423654 D 83333 CDS b1368 947543 1424478..1425410 1 NC_000913.2 Rac prophage; predicted tail protein;orf; Not classified putative alpha helix protein; 1425410 ynaA 947543 ynaA Escherichia coli K12 1424478 D 83333 CDS b4570 4056036 join(1425413..1425622,1426819..1427008) 1 NC_000913.2 pseudogene, Rac prophage lom homolog interrupted by IS5 and N-ter deletion; 1427008 lomR 4056036 lomR Escherichia coli K12 1425413 D 83333 CDS NP_415888.1 16129331 945944 complement(1425770..1426750) 1 NC_000913.2 IS5 transposase and trans-activator 1426750 insH 945944 insH Escherichia coli K12 IS5 transposase and trans-activator NP_415888.1 1425770 R 83333 CDS NP_415890.2 90111261 945207 1427073..1430435 1 NC_000913.2 Rac prophage; predicted tail fiber protein 1430435 stfR 945207 stfR Escherichia coli K12 Rac prophage; predicted tail fiber protein NP_415890.2 1427073 D 83333 CDS NP_415891.1 16129334 946062 1430435..1431010 1 NC_000913.2 tail fiber assembly protein homolog from lambdoid prophage Rac; Rac prophage; predicted tail fiber assembly protein 1431010 tfaR 946062 tfaR Escherichia coli K12 Rac prophage; predicted tail fiber assembly protein NP_415891.1 1430435 D 83333 CDS NP_415892.1 16129335 948973 complement(1431108..1431698) 1 NC_000913.2 Rac prophage; predicted site-specific recombinase 1431698 pinR 948973 pinR Escherichia coli K12 Rac prophage; predicted site-specific recombinase NP_415892.1 1431108 R 83333 CDS NP_415893.1 16129336 946078 complement(1432015..1432281) 1 NC_000913.2 Rac prophage; predicted DNA-binding transcriptional regulator 1432281 ynaE 946078 ynaE Escherichia coli K12 Rac prophage; predicted DNA-binding transcriptional regulator NP_415893.1 1432015 R 83333 CDS b4638 5625564 complement(1432982..1433032) 1 NC_000913.2 pseudogene, prophage Rac integration site ttcA duplication; 1433032 ttcC 5625564 ttcC Escherichia coli K12 1432982 R 83333 CDS NP_415894.4 90111262 945948 complement(1433209..1433643) 1 NC_000913.2 putative filament protein; stress-induced protein, ATP-binding protein 1433643 uspF 945948 uspF Escherichia coli K12 stress-induced protein, ATP-binding protein NP_415894.4 1433209 R 83333 CDS NP_415895.1 16129338 946313 complement(1433784..1434917) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane pore protein N, non-specific 1434917 ompN 946313 ompN Escherichia coli K12 outer membrane pore protein N, non-specific NP_415895.1 1433784 R 83333 CDS NP_415896.1 16129339 946587 complement(1435284..1438808) 1 NC_000913.2 putative oxidoreductase, Fe-S subunit; fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein 1438808 ydbK 946587 ydbK Escherichia coli K12 fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein NP_415896.1 1435284 R 83333 CDS YP_588453.1 94541111 4056027 1439082..1439348 1 NC_000913.2 GO_component: cell outer membrane [goid 0009279]; predicted protein 1439348 ydbJ 4056027 ydbJ Escherichia coli K12 predicted protein YP_588453.1 1439082 D 83333 CDS NP_415897.1 16129340 946525 complement(1439345..1439767) 1 NC_000913.2 heat shock protein hslJ; GO_process: response to temperature stimulus [goid 0009266]; heat-inducible protein 1439767 hslJ 946525 hslJ Escherichia coli K12 heat-inducible protein NP_415897.1 1439345 R 83333 CDS NP_415898.1 16129341 946315 complement(1439878..1440867) 1 NC_000913.2 GO_process: fermentation [goid 0006113]; fermentative D-lactate dehydrogenase, NAD-dependent 1440867 ldhA 946315 ldhA Escherichia coli K12 fermentative D-lactate dehydrogenase, NAD-dependent NP_415898.1 1439878 R 83333 CDS NP_415899.1 16129342 945949 1441075..1443714 1 NC_000913.2 predicted protein 1443714 ydbH 945949 ydbH Escherichia coli K12 predicted protein NP_415899.1 1441075 D 83333 CDS NP_415900.1 16129343 945946 1443711..1443896 1 NC_000913.2 predicted lipoprotein 1443896 ynbE 945946 ynbE Escherichia coli K12 predicted lipoprotein NP_415900.1 1443711 D 83333 CDS NP_415901.2 90111263 945943 1443904..1444230 1 NC_000913.2 conserved protein 1444230 ydbL 945943 ydbL Escherichia coli K12 conserved protein NP_415901.2 1443904 D 83333 CDS NP_415902.1 16129345 945941 complement(1444402..1445307) 1 NC_000913.2 regulatory protein for 2-phenylethylamine catabolism; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amine catabolic process [goid 0009310]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 1445307 feaR 945941 feaR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_415902.1 1444402 R 83333 CDS NP_415903.4 90111264 945933 1445543..1447042 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; GO_process: NAD biosynthetic process [goid 0009435]; phenylacetaldehyde dehydrogenase 1447042 feaB 945933 feaB Escherichia coli K12 phenylacetaldehyde dehydrogenase NP_415903.4 1445543 D 83333 CDS NP_415904.3 162135920 945939 complement(1447100..1449373) 1 NC_000913.2 copper amine oxidase (tyramine oxidase); GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amine catabolic process [goid 0009310]; tyramine oxidase, copper-requiring 1449373 tynA 945939 tynA Escherichia coli K12 tyramine oxidase, copper-requiring NP_415904.3 1447100 R 83333 CDS NP_415905.1 16129348 945954 complement(1449621..1451666) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; fused aldehyde dehydrogenase/enoyl-CoA hydratase 1451666 maoC 945954 maoC Escherichia coli K12 fused aldehyde dehydrogenase/enoyl-CoA hydratase NP_415905.1 1449621 R 83333 CDS NP_415906.1 16129349 945833 1451951..1452880 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1452880 paaA 945833 paaA Escherichia coli K12 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation NP_415906.1 1451951 D 83333 CDS NP_415907.1 16129350 947595 1452892..1453179 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1453179 paaB 947595 paaB Escherichia coli K12 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation NP_415907.1 1452892 D 83333 CDS NP_415908.1 16129351 945956 1453188..1453934 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1453934 paaC 945956 paaC Escherichia coli K12 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation NP_415908.1 1453188 D 83333 CDS NP_415909.3 145698253 945959 1453943..1454446 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1454446 paaD 945959 paaD Escherichia coli K12 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation NP_415909.3 1453943 D 83333 CDS NP_415910.1 16129353 945962 1454454..1455524 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation 1455524 paaE 945962 paaE Escherichia coli K12 predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation NP_415910.1 1454454 D 83333 CDS NP_415911.1 16129354 946011 1455521..1456288 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; enoyl-CoA hydratase-isomerase 1456288 paaF 946011 paaF Escherichia coli K12 enoyl-CoA hydratase-isomerase NP_415911.1 1455521 D 83333 CDS NP_415912.1 16129355 946263 1456288..1457076 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; acyl-CoA hydratase 1457076 paaG 946263 paaG Escherichia coli K12 acyl-CoA hydratase NP_415912.1 1456288 D 83333 CDS NP_415913.1 16129356 945940 1457078..1458505 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; 3-hydroxybutyryl-CoA dehydrogenase 1458505 paaH 945940 paaH Escherichia coli K12 3-hydroxybutyryl-CoA dehydrogenase NP_415913.1 1457078 D 83333 CDS NP_415914.1 16129357 945265 1458495..1458917 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted thioesterase 1458917 paaI 945265 paaI Escherichia coli K12 predicted thioesterase NP_415914.1 1458495 D 83333 CDS NP_415915.1 16129358 946121 1458917..1460122 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted beta-ketoadipyl CoA thiolase 1460122 paaJ 946121 paaJ Escherichia coli K12 predicted beta-ketoadipyl CoA thiolase NP_415915.1 1458917 D 83333 CDS NP_415916.1 16129359 945963 1460149..1461462 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; phenylacetyl-CoA ligase 1461462 paaK 945963 paaK Escherichia coli K12 phenylacetyl-CoA ligase NP_415916.1 1460149 D 83333 CDS NP_415917.1 16129360 945966 1461563..1462513 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive 1462513 paaX 945966 paaX Escherichia coli K12 DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive NP_415917.1 1461563 D 83333 CDS NP_415918.1 16129361 945965 1462495..1463085 1 NC_000913.2 predicted hexapeptide repeat acetyltransferase 1463085 paaY 945965 paaY Escherichia coli K12 predicted hexapeptide repeat acetyltransferase NP_415918.1 1462495 D 83333 CDS b4492 2847750 join(1463416..1465928,1467265..1467317,1468541..1472037) 1 NC_000913.2 pseudogene, autotransporter homolog interrupted by IS2 and IS30; 1472037 ydbA 2847750 ydbA Escherichia coli K12 1463416 D 83333 CDS NP_415920.1 16129363 945952 complement(1465945..1466850) 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB' 1466850 insD 945952 insD Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element transposase InsAB' NP_415920.1 1465945 R 83333 CDS NP_415921.2 145698254 945967 complement(1466808..1467173) 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element repressor InsA 1467173 insC 945967 insC Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element repressor InsA NP_415921.2 1466808 R 83333 CDS NP_415922.1 16129365 945968 1467382..1468533 1 NC_000913.2 KpLE2 phage-like element; IS30 transposase 1468533 insI 945968 insI Escherichia coli K12 KpLE2 phage-like element; IS30 transposase NP_415922.1 1467382 D 83333 CDS NP_415924.1 16129367 945980 1472245..1473105 1 NC_000913.2 putative dehydrogenase; predicted oxidoreductase, NAD(P)-binding 1473105 ydbC 945980 ydbC Escherichia coli K12 predicted oxidoreductase, NAD(P)-binding NP_415924.1 1472245 D 83333 CDS NP_415925.2 90111266 945983 1473168..1475474 1 NC_000913.2 predicted protein 1475474 ydbD 945983 ydbD Escherichia coli K12 predicted protein NP_415925.2 1473168 D 83333 CDS NP_415926.4 90111267 945973 1475645..1476250 1 NC_000913.2 predicted inner membrane protein 1476250 ynbA 945973 ynbA Escherichia coli K12 predicted inner membrane protein NP_415926.4 1475645 D 83333 CDS NP_415927.1 16129370 945972 1476250..1477146 1 NC_000913.2 putative phosphatidate cytidiltransferase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; predicted CDP-diglyceride synthase 1477146 ynbB 945972 ynbB Escherichia coli K12 predicted CDP-diglyceride synthase NP_415927.1 1476250 D 83333 CDS NP_415928.1 16129371 945970 1477162..1478919 1 NC_000913.2 predicted hydrolase 1478919 ynbC 945970 ynbC Escherichia coli K12 predicted hydrolase NP_415928.1 1477162 D 83333 CDS NP_415929.1 16129372 945985 1478933..1480225 1 NC_000913.2 putative enzymes; predicted phosphatase, inner membrane protein 1480225 ynbD 945985 ynbD Escherichia coli K12 predicted phosphatase, inner membrane protein NP_415929.1 1478933 D 83333 CDS NP_415930.1 16129373 947569 complement(1480279..1480884) 1 NC_000913.2 acyl carrier protein phosphodiesterase; NADH-azoreductase, FMN-dependent 1480884 azoR 947569 azoR Escherichia coli K12 NADH-azoreductase, FMN-dependent NP_415930.1 1480279 R 83333 CDS NP_415931.4 145698255 948444 1481085..1484987 1 NC_000913.2 helicase, ATP-dependent; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; ATP-dependent helicase 1484987 hrpA 948444 hrpA Escherichia coli K12 ATP-dependent helicase NP_415931.4 1481085 D 83333 CDS NP_415932.1 16129375 946215 1485259..1486059 1 NC_000913.2 conserved protein 1486059 ydcF 946215 ydcF Escherichia coli K12 conserved protein NP_415932.1 1485259 D 83333 CDS NP_415933.1 16129376 945672 1486256..1487695 1 NC_000913.2 aldehyde dehydrogenase, NAD-linked; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: methylglyoxal metabolic process [goid 0009438]; GO_process: fermentation [goid 0006113]; GO_process: glycolate metabolic process [goid 0009441]; aldehyde dehydrogenase A, NAD-linked 1487695 aldA 945672 aldA Escherichia coli K12 aldehyde dehydrogenase A, NAD-linked NP_415933.1 1486256 D 83333 CDS b4493 2847738 complement(join(1487737..1487988,1487988..1488737)) 1 NC_000913.2 pseudogene, GAP dehydrogenase glyceraldehyde-3-phosphate dehydrogenase (second fragment); 1488737 gapC 2847738 gapC Escherichia coli K12 1487737 R 83333 CDS NP_415935.2 90111268 947241 1488926..1489456 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; GO_process: cytochrome complex assembly [goid 0017004]; cytochrome b561 1489456 cybB 947241 cybB Escherichia coli K12 cytochrome b561 NP_415935.2 1488926 D 83333 CDS NP_415936.1 16129378 945986 1489701..1489874 1 NC_000913.2 predicted protein 1489874 ydcA 945986 ydcA Escherichia coli K12 predicted protein NP_415936.1 1489701 D 83333 CDS YP_025301.1 49176107 2847727 complement(1489946..1490095) 1 NC_000913.2 small toxic membrane polypeptide; toxic polypeptide, small 1490095 hokB 2847727 hokB Escherichia coli K12 toxic polypeptide, small YP_025301.1 1489946 R 83333 CDS NP_415937.1 16129379 948820 complement(1489986..1490153) 1 NC_000913.2 regulatory peptide whose translation enables hokB expression; regulatory peptide 1490153 mokB 948820 mokB Escherichia coli K12 regulatory peptide NP_415937.1 1489986 R 83333 CDS NP_415938.1 16129380 945995 1490494..1492134 1 NC_000913.2 GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor 1492134 trg 945995 trg Escherichia coli K12 methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor NP_415938.1 1490494 D 83333 CDS NP_415939.2 90111269 948865 complement(1492172..1493095) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1493095 ydcI 948865 ydcI Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415939.2 1492172 R 83333 CDS NP_415940.1 16129382 945991 1493312..1494655 1 NC_000913.2 conserved protein 1494655 ydcJ 945991 ydcJ Escherichia coli K12 conserved protein NP_415940.1 1493312 D 83333 CDS NP_415941.5 145698256 945994 1494880..1496535 1 NC_000913.2 putative glycoprotein; GO_component: periplasmic space [goid 0042597]; GO_process: response to osmotic stress [goid 0006970]; glucan biosynthesis protein, periplasmic 1496535 mdoD 945994 mdoD Escherichia coli K12 glucan biosynthesis protein, periplasmic NP_415941.5 1494880 D 83333 CDS NP_415943.4 90111271 945997 1496675..1496899 1 NC_000913.2 predicted protein 1496899 ydcH 945997 ydcH Escherichia coli K12 predicted protein NP_415943.4 1496675 D 83333 CDS NP_415944.1 16129386 945998 1496962..1497501 1 NC_000913.2 ribosomal-protein-serine acetyltransferase; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; ribosomal-protein-L7/L12-serine acetyltransferase 1497501 rimL 945998 rimL Escherichia coli K12 ribosomal-protein-L7/L12-serine acetyltransferase NP_415944.1 1496962 D 83333 CDS NP_415945.1 16129387 944932 complement(1497493..1498473) 1 NC_000913.2 predicted enzyme 1498473 ydcK 944932 ydcK Escherichia coli K12 predicted enzyme NP_415945.1 1497493 R 83333 CDS NP_415946.1 16129388 945852 1498597..1499589 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; potassium-tellurite ethidium and proflavin transporter 1499589 tehA 945852 tehA Escherichia coli K12 potassium-tellurite ethidium and proflavin transporter NP_415946.1 1498597 D 83333 CDS NP_415947.1 16129389 945979 1499586..1500179 1 NC_000913.2 GO_process: response to drug [goid 0042493]; predicted S-adenosyl-L-methionine-dependent methyltransferase 1500179 tehB 945979 tehB Escherichia coli K12 predicted S-adenosyl-L-methionine-dependent methyltransferase NP_415947.1 1499586 D 83333 CDS NP_415948.1 16129390 948203 1500481..1501149 1 NC_000913.2 predicted lipoprotein 1501149 ydcL 948203 ydcL Escherichia coli K12 predicted lipoprotein NP_415948.1 1500481 D 83333 CDS b4578 4056028 complement(1501167..1501658) 1 NC_000913.2 pseudogene, transposase homolog; 1501658 yncK 4056028 yncK Escherichia coli K12 1501167 R 83333 CDS NP_415949.1 16129391 944942 1501681..1502889 1 NC_000913.2 predicted transposase 1502889 ydcM 944942 ydcM Escherichia coli K12 predicted transposase NP_415949.1 1501681 D 83333 CDS NP_415950.4 90111272 947247 complement(1502929..1504104) 1 NC_000913.2 putative membrane transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted benzoate transporter 1504104 ydcO 947247 ydcO Escherichia coli K12 predicted benzoate transporter NP_415950.4 1502929 R 83333 CDS NP_415951.1 16129393 946000 1504196..1504732 1 NC_000913.2 predicted DNA-binding transcriptional regulator 1504732 ydcN 946000 ydcN Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415951.1 1504196 D 83333 CDS NP_415952.2 90111273 945993 1504805..1506766 1 NC_000913.2 putative protease; predicted peptidase 1506766 ydcP 945993 ydcP Escherichia coli K12 predicted peptidase NP_415952.2 1504805 D 83333 CDS NP_415953.1 16129395 945990 complement(1506858..1507088) 1 NC_000913.2 predicted protein 1507088 yncJ 945990 yncJ Escherichia coli K12 predicted protein NP_415953.1 1506858 R 83333 CDS NP_415954.2 94541092 945989 1507310..1507486 1 NC_000913.2 predicted protein 1507486 yncN 945989 yncN Escherichia coli K12 predicted protein NP_415954.2 1507310 D 83333 CDS NP_415955.2 145698257 946001 1507532..1507948 1 NC_000913.2 predicted DNA-binding transcriptional regulator 1507948 ydcQ 946001 ydcQ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415955.2 1507532 D 83333 CDS NP_415956.1 16129398 946004 1508027..1509433 1 NC_000913.2 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system; GO_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; fused predicted DNA-binding transcriptional regulator/predicted amino transferase 1509433 ydcR 946004 ydcR Escherichia coli K12 fused predicted DNA-binding transcriptional regulator/predicted amino transferase NP_415956.1 1508027 D 83333 CDS NP_415957.1 16129399 946005 1509678..1510823 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; predicted spermidine/putrescine transporter subunit 1510823 ydcS 946005 ydcS Escherichia coli K12 predicted spermidine/putrescine transporter subunit NP_415957.1 1509678 D 83333 CDS NP_415958.1 16129400 946007 1510841..1511854 1 NC_000913.2 ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; predicted spermidine/putrescine transporter subunit 1511854 ydcT 946007 ydcT Escherichia coli K12 predicted spermidine/putrescine transporter subunit NP_415958.1 1510841 D 83333 CDS NP_415959.1 16129401 945976 1511855..1512796 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted spermidine/putrescine transporter subunit 1512796 ydcU 945976 ydcU Escherichia coli K12 predicted spermidine/putrescine transporter subunit NP_415959.1 1511855 D 83333 CDS NP_415960.1 16129402 945903 1512786..1513580 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted spermidine/putrescine transporter subunit 1513580 ydcV 945903 ydcV Escherichia coli K12 predicted spermidine/putrescine transporter subunit NP_415960.1 1512786 D 83333 CDS NP_415961.1 16129403 945876 1513602..1515026 1 NC_000913.2 putative aldehyde dehydrogenase; medium chain aldehyde dehydrogenase 1515026 ydcW 945876 ydcW Escherichia coli K12 medium chain aldehyde dehydrogenase NP_415961.1 1513602 D 83333 CDS YP_001165318.1 145698258 5061503 complement(1515123..1515218) 1 NC_000913.2 hypothetical protein 1515218 yncL 5061503 yncL Escherichia coli K12 hypothetical protein YP_001165318.1 1515123 R 83333 CDS NP_415962.2 90111274 945936 1515413..1515586 1 NC_000913.2 predicted inner membrane protein 1515586 ydcX 945936 ydcX Escherichia coli K12 predicted inner membrane protein NP_415962.2 1515413 D 83333 CDS NP_415963.1 16129405 945916 1515672..1515905 1 NC_000913.2 predicted protein 1515905 ydcY 945916 ydcY Escherichia coli K12 predicted protein NP_415963.1 1515672 D 83333 CDS NP_415964.1 16129406 946008 complement(1515906..1516355) 1 NC_000913.2 predicted inner membrane protein 1516355 ydcZ 946008 ydcZ Escherichia coli K12 predicted inner membrane protein NP_415964.1 1515906 R 83333 CDS NP_415965.1 16129407 946010 complement(1516352..1516870) 1 NC_000913.2 GO_process: response to drug [goid 0042493]; predicted acyltransferase with acyl-CoA N-acyltransferase domain 1516870 yncA 946010 yncA Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_415965.1 1516352 R 83333 CDS NP_415966.5 145698259 946012 1517027..1518088 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1518088 yncB 946012 yncB Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_415966.5 1517027 D 83333 CDS NP_415967.2 90111276 946014 1518286..1518951 1 NC_000913.2 GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1518951 yncC 946014 yncC Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415967.2 1518286 D 83333 CDS NP_415968.1 16129410 946015 complement(1518987..1521089) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted iron outer membrane transporter 1521089 yncD 946015 yncD Escherichia coli K12 predicted iron outer membrane transporter NP_415968.1 1518987 R 83333 CDS NP_415969.1 16129411 946006 1521331..1522392 1 NC_000913.2 putative receptor; conserved protein 1522392 yncE 946006 yncE Escherichia coli K12 conserved protein NP_415969.1 1521331 D 83333 CDS NP_415970.4 90111277 946019 complement(1522505..1524004) 1 NC_000913.2 L-asparagine permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: asparagine biosynthetic process [goid 0006529]; L-asparagine transporter 1524004 ansP 946019 ansP Escherichia coli K12 L-asparagine transporter NP_415970.4 1522505 R 83333 CDS NP_415971.1 16129413 946023 1524271..1524888 1 NC_000913.2 predicted enzyme 1524888 yncG 946023 yncG Escherichia coli K12 predicted enzyme NP_415971.1 1524271 D 83333 CDS NP_415972.1 16129414 946024 1524964..1525176 1 NC_000913.2 predicted protein 1525176 yncH 946024 yncH Escherichia coli K12 predicted protein NP_415972.1 1524964 D 83333 CDS b1456 946026 1525926..1527962 1 NC_000913.2 pseudogene, rhsE element core protein RhsE; 1527962 rhsE 946026 rhsE Escherichia coli K12 1525926 D 83333 CDS NP_415974.1 16129416 946958 1527946..1528428 1 NC_000913.2 predicted protein 1528428 ydcD 946958 ydcD Escherichia coli K12 predicted protein NP_415974.1 1527946 D 83333 CDS b1459 945121 join(1528610..1529347,1529349..1529663) 1 NC_000913.2 predicted protein; 1529663 yncI 945121 yncI Escherichia coli K12 1528610 D 83333 CDS NP_415977.1 16129419 947435 1529840..1530976 1 NC_000913.2 H repeat-associated protein (ORF-H); conserved protein 1530976 ydcC 947435 ydcC Escherichia coli K12 conserved protein NP_415977.1 1529840 D 83333 CDS NP_415978.1 16129420 945731 1531076..1531309 1 NC_000913.2 4-oxalocrotonate tautomerase 1531309 pptA 945731 pptA Escherichia coli K12 4-oxalocrotonate tautomerase NP_415978.1 1531076 D 83333 CDS NP_415979.2 90111278 946192 complement(1531306..1531875) 1 NC_000913.2 conserved protein 1531875 yddH 946192 yddH Escherichia coli K12 conserved protein NP_415979.2 1531306 R 83333 CDS NP_415980.1 16129422 947251 1532048..1532893 1 NC_000913.2 GO_process: metabolic process [goid 0008152]; N-hydroxyarylamine O-acetyltransferase 1532893 nhoA 947251 nhoA Escherichia coli K12 N-hydroxyarylamine O-acetyltransferase NP_415980.1 1532048 D 83333 CDS NP_415981.1 16129423 944782 complement(1532989..1533882) 1 NC_000913.2 conserved protein 1533882 yddE 944782 yddE Escherichia coli K12 conserved protein NP_415981.1 1532989 R 83333 CDS NP_415982.1 16129424 946029 complement(1533961..1534641) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 2 (NRZ), gamma subunit 1534641 narV 946029 narV Escherichia coli K12 nitrate reductase 2 (NRZ), gamma subunit NP_415982.1 1533961 R 83333 CDS NP_415983.1 16129425 946032 complement(1534638..1535333) 1 NC_000913.2 GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; nitrate reductase 2 (NRZ), delta subunit (assembly subunit) 1535333 narW 946032 narW Escherichia coli K12 nitrate reductase 2 (NRZ), delta subunit (assembly subunit) NP_415983.1 1534638 R 83333 CDS NP_415984.1 16129426 946034 complement(1535333..1536877) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 2 (NRZ), beta subunit 1536877 narY 946034 narY Escherichia coli K12 nitrate reductase 2 (NRZ), beta subunit NP_415984.1 1535333 R 83333 CDS NP_415985.1 16129427 945999 complement(1536874..1540614) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase 2 (NRZ), alpha subunit 1540614 narZ 945999 narZ Escherichia coli K12 nitrate reductase 2 (NRZ), alpha subunit NP_415985.1 1536874 R 83333 CDS NP_415986.1 16129428 945799 complement(1540696..1542084) 1 NC_000913.2 nitrite extrusion protein 2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrate/nitrite transporter 1542084 narU 945799 narU Escherichia coli K12 nitrate/nitrite transporter NP_415986.1 1540696 R 83333 CDS NP_415987.1 16129429 945955 complement(1542408..1542743) 1 NC_000913.2 predicted protein 1542743 yddJ 945955 yddJ Escherichia coli K12 predicted protein NP_415987.1 1542408 R 83333 CDS b1471 947312 complement(1542782..1543771) 1 NC_000913.2 pseudogene putative glycoportein; GO_process: glycoprotein biosynthetic process [goid 0009101]; 1543771 yddK 947312 yddK Escherichia coli K12 1542782 R 83333 CDS b1472 945737 complement(1543774..1544052) 1 NC_000913.2 predicted lipoprotein;putative membrane; Not classified putative outer membrane porin protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 1544052 yddL 945737 yddL Escherichia coli K12 1543774 R 83333 CDS NP_415990.5 145698260 945942 complement(1544312..1545193) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted methyl viologen efflux pump 1545193 yddG 945942 yddG Escherichia coli K12 predicted methyl viologen efflux pump NP_415990.5 1544312 R 83333 CDS NP_415991.1 16129433 946035 1545425..1548472 1 NC_000913.2 formate dehydrogenase-N, nitrate-inducible, alpha subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-N, alpha subunit, nitrate-inducible 1548472 fdnG 946035 fdnG Escherichia coli K12 formate dehydrogenase-N, alpha subunit, nitrate-inducible NP_415991.1 1545425 D 83333 CDS NP_415992.1 16129434 948794 1548485..1549369 1 NC_000913.2 formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible 1549369 fdnH 948794 fdnH Escherichia coli K12 formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible NP_415992.1 1548485 D 83333 CDS NP_415993.1 16129435 946038 1549362..1550015 1 NC_000913.2 formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible 1550015 fdnI 946038 fdnI Escherichia coli K12 formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible NP_415993.1 1549362 D 83333 CDS NP_415994.4 145698261 946040 complement(1550422..1550706) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1550706 yddM 946040 yddM Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_415994.4 1550422 R 83333 CDS NP_415995.4 90111280 946036 complement(1550852..1551862) 1 NC_000913.2 alcohol dehydrogenase; GO_process: anaerobic respiration [goid 0009061]; ethanol-active dehydrogenase/acetaldehyde-active reductase 1551862 adhP 946036 adhP Escherichia coli K12 ethanol-active dehydrogenase/acetaldehyde-active reductase NP_415995.4 1550852 R 83333 CDS NP_415996.2 90111281 946031 complement(1551996..1553693) 1 NC_000913.2 NAD-linked malate dehydrogenase (malic enzyme); GO_process: gluconeogenesis [goid 0006094]; malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) 1553693 maeA 946031 maeA Escherichia coli K12 malate dehydrogenase, (decarboxylating, NAD-requiring) (malic enzyme) NP_415996.2 1551996 R 83333 CDS NP_415997.1 16129439 946030 complement(1553850..1553987) 1 NC_000913.2 30S ribosomal subunit protein S22; stationary phase-induced ribosome-associated protein; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S22 1553987 sra 946030 sra Escherichia coli K12 30S ribosomal subunit protein S22 NP_415997.1 1553850 R 83333 CDS NP_415998.4 90111282 946041 complement(1554089..1554304) 1 NC_000913.2 biofilm-dependent modulation protein 1554304 bdm 946041 bdm Escherichia coli K12 biofilm-dependent modulation protein NP_415998.4 1554089 R 83333 CDS NP_415999.1 16129441 946043 1554649..1555080 1 NC_000913.2 osmotically inducible protein; GO_process: response to osmotic stress [goid 0006970]; osmotically inducible, stress-inducible membrane protein 1555080 osmC 946043 osmC Escherichia coli K12 osmotically inducible, stress-inducible membrane protein NP_415999.1 1554649 D 83333 CDS NP_416000.1 16129442 946020 complement(1555136..1556062) 1 NC_000913.2 ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; D-ala-D-ala transporter subunit 1556062 ddpF 946020 ddpF Escherichia coli K12 D-ala-D-ala transporter subunit NP_416000.1 1555136 R 83333 CDS NP_416001.1 16129443 946002 complement(1556055..1557041) 1 NC_000913.2 ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; D-ala-D-ala transporter subunit 1557041 ddpD 946002 ddpD Escherichia coli K12 D-ala-D-ala transporter subunit NP_416001.1 1556055 R 83333 CDS NP_416002.1 16129444 946028 complement(1557038..1557934) 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; D-ala-D-ala transporter subunit 1557934 ddpC 946028 ddpC Escherichia coli K12 D-ala-D-ala transporter subunit NP_416002.1 1557038 R 83333 CDS NP_416003.1 16129445 946044 complement(1557931..1558953) 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; D-ala-D-ala transporter subunit 1558953 ddpB 946044 ddpB Escherichia coli K12 D-ala-D-ala transporter subunit NP_416003.1 1557931 R 83333 CDS NP_416004.1 16129446 946052 complement(1558955..1560505) 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; D-ala-D-a la transporter subunit 1560505 ddpA 946052 ddpA Escherichia coli K12 D-ala-D-a la transporter subunit NP_416004.1 1558955 R 83333 CDS NP_416005.1 16129447 945532 complement(1560519..1561100) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: response to osmotic stress [goid 0006970]; D-ala-D-ala dipeptidase, Zn-dependent 1561100 ddpX 945532 ddpX Escherichia coli K12 D-ala-D-ala dipeptidase, Zn-dependent NP_416005.1 1560519 R 83333 CDS NP_416006.4 162135902 945815 complement(1561358..1563757) 1 NC_000913.2 cAMP phosphodiesterase, heme-regulated 1563757 dos 945815 dos Escherichia coli K12 cAMP phosphodiesterase, heme-regulated NP_416006.4 1561358 R 83333 CDS NP_416007.3 145698262 945835 complement(1563782..1565164) 1 NC_000913.2 predicted diguanylate cyclase 1565164 yddV 945835 yddV Escherichia coli K12 predicted diguanylate cyclase NP_416007.3 1563782 R 83333 CDS NP_416008.1 16129450 945975 complement(1565528..1566847) 1 NC_000913.2 predicted liprotein 1566847 yddW 945975 yddW Escherichia coli K12 predicted liprotein NP_416008.1 1565528 R 83333 CDS NP_416009.1 16129451 946057 complement(1566978..1568513) 1 NC_000913.2 acid sensitivity protein, putative transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted glutamate:gamma-aminobutyric acid antiporter 1568513 gadC 946057 gadC Escherichia coli K12 predicted glutamate:gamma-aminobutyric acid antiporter NP_416009.1 1566978 R 83333 CDS NP_416010.1 16129452 946058 complement(1568669..1570069) 1 NC_000913.2 glutamate decarboxylase isozyme; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amino acid metabolic process [goid 0006520]; glutamate decarboxylase B, PLP-dependent 1570069 gadB 946058 gadB Escherichia coli K12 glutamate decarboxylase B, PLP-dependent NP_416010.1 1568669 R 83333 CDS NP_416011.1 16129453 946059 complement(1570431..1573226) 1 NC_000913.2 putative zinc protease; GO_component: cytoplasm [goid 0005737]; predicted peptidase 1573226 pqqL 946059 pqqL Escherichia coli K12 predicted peptidase NP_416011.1 1570431 R 83333 CDS NP_416012.1 16129454 945961 complement(1573271..1575643) 1 NC_000913.2 predicted porin protein 1575643 yddB 945961 yddB Escherichia coli K12 predicted porin protein NP_416012.1 1573271 R 83333 CDS NP_416013.1 16129455 945945 complement(1575681..1577366) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component 1577366 yddA 945945 yddA Escherichia coli K12 fused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component NP_416013.1 1575681 R 83333 CDS NP_416014.4 90111285 945981 complement(1577657..1578814) 1 NC_000913.2 putative enzyme; conserved protein 1578814 ydeM 945981 ydeM Escherichia coli K12 conserved protein NP_416014.4 1577657 R 83333 CDS NP_416015.2 90111286 945957 complement(1578866..1580548) 1 NC_000913.2 putative sulfatase; GO_process: sulfur metabolic process [goid 0006790]; conserved protein 1580548 ydeN 945957 ydeN Escherichia coli K12 conserved protein NP_416015.2 1578866 R 83333 CDS NP_416016.1 16129458 945922 complement(1580950..1581711) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional acfivator 1581711 ydeO 945922 ydeO Escherichia coli K12 predicted DNA-binding transcriptional acfivator NP_416016.1 1580950 R 83333 CDS NP_416018.1 16129460 946055 complement(1582231..1584510) 1 NC_000913.2 putative oxidoreductase, major subunit; predicted oxidoreductase 1584510 ydeP 946055 ydeP Escherichia coli K12 predicted oxidoreductase NP_416018.1 1582231 R 83333 CDS NP_416019.1 16129461 946050 complement(1584844..1585758) 1 NC_000913.2 putative adhesin; similar to FimH protein; predicted fimbrial-like adhesin protein 1585758 ydeQ 946050 ydeQ Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416019.1 1584844 R 83333 CDS NP_416020.1 16129462 946049 complement(1585817..1586320) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1586320 ydeR 946049 ydeR Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416020.1 1585817 R 83333 CDS NP_416021.1 16129463 946047 complement(1586333..1586863) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 1586863 ydeS 946047 ydeS Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416021.1 1586333 R 83333 CDS b1505 946042 complement(1586877..1588103) 1 NC_000913.2 pseudogene putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 1588103 ydeT 946042 ydeT Escherichia coli K12 1586877 R 83333 CDS b1506 946063 complement(join(1588358..1588450,1588450..1588560)) 1 NC_000913.2 predicted transcriptional regulator; 1588560 yneL 946063 yneL Escherichia coli K12 1588358 R 83333 CDS NP_416024.1 16129466 946064 complement(1588878..1590200) 1 NC_000913.2 persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: DNA metabolic process [goid 0006259]; regulator with hipB 1590200 hipA 946064 hipA Escherichia coli K12 regulator with hipB NP_416024.1 1588878 R 83333 CDS NP_416025.1 16129467 946065 complement(1590200..1590466) 1 NC_000913.2 persistence to inhibition of murein or DNA biosynthesis; regulatory protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: DNA metabolic process [goid 0006259]; DNA-binding transcriptional regulator 1590466 hipB 946065 hipB Escherichia coli K12 DNA-binding transcriptional regulator NP_416025.1 1590200 R 83333 CDS NP_416026.1 16129468 947796 complement(1590689..1592089) 1 NC_000913.2 putative ATP-binding component of a transport system and adhesin protein; conserved protein 1592089 ydeU 947796 ydeU Escherichia coli K12 conserved protein NP_416026.1 1590689 R 83333 CDS NP_416027.1 16129469 947790 complement(1592133..1596110) 1 NC_000913.2 predicted lipoprotein 1596110 ydeK 947790 ydeK Escherichia coli K12 predicted lipoprotein NP_416027.1 1592133 R 83333 CDS NP_416028.3 49176118 946069 complement(1596641..1598233) 1 NC_000913.2 autoinducer-2 (AI-2) kinase 1598233 lsrK 946069 lsrK Escherichia coli K12 autoinducer-2 (AI-2) kinase NP_416028.3 1596641 R 83333 CDS NP_416029.1 16129471 946070 complement(1598312..1599265) 1 NC_000913.2 GO_function: transcriptional repressor activity [goid 0016564]; lsr operon transcriptional repressor 1599265 lsrR 946070 lsrR Escherichia coli K12 lsr operon transcriptional repressor NP_416029.1 1598312 R 83333 CDS NP_416030.1 16129472 945680 1599514..1601049 1 NC_000913.2 autoinducer-2 (AI-2)-transporting ATPase; GO_component: cytoplasm [goid 0005737]; fused AI2 transporter subunits of ABC superfamily: ATP-binding components 1601049 lsrA 945680 lsrA Escherichia coli K12 fused AI2 transporter subunits of ABC superfamily: ATP-binding components NP_416030.1 1599514 D 83333 CDS NP_416031.1 16129473 946105 1601043..1602071 1 NC_000913.2 autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; AI2 transporter 1602071 lsrC 946105 lsrC Escherichia coli K12 AI2 transporter NP_416031.1 1601043 D 83333 CDS NP_416032.1 16129474 946264 1602071..1603063 1 NC_000913.2 autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; AI2 transporter 1603063 lsrD 946264 lsrD Escherichia coli K12 AI2 transporter NP_416032.1 1602071 D 83333 CDS NP_416033.1 16129475 945418 1603075..1604097 1 NC_000913.2 periplasmic autoinducer-2 (AI-2) binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; AI2 transporter 1604097 lsrB 945418 lsrB Escherichia coli K12 AI2 transporter NP_416033.1 1603075 D 83333 CDS NP_416034.1 16129476 946071 1604124..1604999 1 NC_000913.2 putative autoinducer-2 (AI-2) aldolase 1604999 lsrF 946071 lsrF Escherichia coli K12 putative autoinducer-2 (AI-2) aldolase NP_416034.1 1604124 D 83333 CDS NP_416035.1 16129477 946073 1605023..1605313 1 NC_000913.2 autoinducer-2 (AI-2) modifying protein LsrG 1605313 lsrG 946073 lsrG Escherichia coli K12 autoinducer-2 (AI-2) modifying protein LsrG NP_416035.1 1605023 D 83333 CDS NP_416036.1 16129478 946074 1605370..1606128 1 NC_000913.2 trans-aconitate 2-methyltransferase; GO_component: cytoplasm [goid 0005737]; trans-aconitate methyltransferase 1606128 tam 946074 tam Escherichia coli K12 trans-aconitate methyltransferase NP_416036.1 1605370 D 83333 CDS NP_416037.2 90111287 946188 complement(1606132..1607046) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1607046 yneE 946188 yneE Escherichia coli K12 conserved inner membrane protein NP_416037.2 1606132 R 83333 CDS YP_025302.1 49176119 945542 complement(1607253..1608704) 1 NC_000913.2 altronate oxidoreductase; GO_process: carbohydrate catabolic process [goid 0016052]; altronate oxidoreductase, NAD-dependent 1608704 uxaB 945542 uxaB Escherichia coli K12 altronate oxidoreductase, NAD-dependent YP_025302.1 1607253 R 83333 CDS NP_416039.1 16129481 947422 complement(1608931..1609878) 1 NC_000913.2 predicted diguanylate cyclase 1609878 yneF 947422 yneF Escherichia coli K12 predicted diguanylate cyclase NP_416039.1 1608931 R 83333 CDS NP_416040.1 16129482 946171 complement(1609990..1610349) 1 NC_000913.2 conserved protein 1610349 yneG 946171 yneG Escherichia coli K12 conserved protein NP_416040.1 1609990 R 83333 CDS NP_416041.1 16129483 944973 complement(1610349..1611275) 1 NC_000913.2 putative glutaminase; GO_process: amino acid catabolic process [goid 0009063]; predicted glutaminase 1611275 yneH 944973 yneH Escherichia coli K12 predicted glutaminase NP_416041.1 1610349 R 83333 CDS NP_416042.2 90111288 947440 complement(1611339..1612727) 1 NC_000913.2 putative aldehyde dehydrogenase; predicted aldehyde dehydrogenase 1612727 yneI 947440 yneI Escherichia coli K12 predicted aldehyde dehydrogenase NP_416042.2 1611339 R 83333 CDS NP_416043.1 16129485 946079 1612828..1613709 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1613709 yneJ 946079 yneJ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416043.1 1612828 D 83333 CDS NP_416044.1 16129486 946080 1613787..1614902 1 NC_000913.2 predicted protein 1614902 yneK 946080 yneK Escherichia coli K12 predicted protein NP_416044.1 1613787 D 83333 CDS NP_416045.1 16129487 947218 1615052..1616242 1 NC_000913.2 L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS family); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity [goid 0015524]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted arabinose transporter 1616242 ydeA 947218 ydeA Escherichia coli K12 predicted arabinose transporter NP_416045.1 1615052 D 83333 CDS NP_416046.1 16129488 947132 complement(1616267..1616932) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted transporter 1616932 marC 947132 marC Escherichia coli K12 predicted transporter NP_416046.1 1616267 R 83333 CDS NP_416047.4 90111289 945825 1617144..1617578 1 NC_000913.2 multiple antibiotic resistance protein; repressor of mar operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor of multiple antibiotic resistance 1617578 marR 945825 marR Escherichia coli K12 DNA-binding transcriptional repressor of multiple antibiotic resistance NP_416047.4 1617144 D 83333 CDS NP_416048.2 90111290 947613 1617598..1617981 1 NC_000913.2 multiple antibiotic resistance; transcriptional activator of defense systems; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual activator of multiple antibiotic resistance 1617981 marA 947613 marA Escherichia coli K12 DNA-binding transcriptional dual activator of multiple antibiotic resistance NP_416048.2 1617598 D 83333 CDS NP_416049.1 16129491 946184 1618013..1618231 1 NC_000913.2 multiple antibiotic resistance protein; GO_process: response to drug [goid 0042493]; GO_process: xenobiotic metabolic process [goid 0006805]; predicted protein 1618231 marB 946184 marB Escherichia coli K12 predicted protein NP_416049.1 1618013 D 83333 CDS NP_416050.4 90111291 946081 complement(1618262..1619161) 1 NC_000913.2 amino acid metabolite efflux pump; cysteine and O-acetyl-L-serine efflux system 1619161 eamA 946081 eamA Escherichia coli K12 cysteine and O-acetyl-L-serine efflux system NP_416050.4 1618262 R 83333 CDS NP_416051.1 16129493 946083 1619356..1620543 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1620543 ydeE 946083 ydeE Escherichia coli K12 predicted transporter NP_416051.1 1619356 D 83333 CDS YP_001165319.1 145698263 5061497 1620670..1620765 1 NC_000913.2 hypothetical protein 1620765 yneM 5061497 yneM Escherichia coli K12 hypothetical protein YP_001165319.1 1620670 D 83333 CDS NP_416052.1 16129494 946075 complement(1620984..1621874) 1 NC_000913.2 conserved protein 1621874 ydeH 946075 ydeH Escherichia coli K12 conserved protein NP_416052.1 1620984 R 83333 CDS NP_416054.1 16129495 946068 complement(1622129..1622521) 1 NC_000913.2 conserved protein 1622521 ydeI 946068 ydeI Escherichia coli K12 conserved protein NP_416054.1 1622129 R 83333 CDS NP_416055.1 16129496 946067 1622797..1623315 1 NC_000913.2 conserved protein 1623315 ydeJ 946067 ydeJ Escherichia coli K12 conserved protein NP_416055.1 1622797 D 83333 CDS NP_416056.1 16129497 946084 complement(1623359..1625404) 1 NC_000913.2 dipeptidyl carboxypeptidase II 1625404 dcp 946084 dcp Escherichia coli K12 dipeptidyl carboxypeptidase II NP_416056.1 1623359 R 83333 CDS NP_416057.1 16129498 946085 1625541..1626287 1 NC_000913.2 putative oxidoreductase; L-allo-threonine dehydrogenase, NAD(P)-binding 1626287 ydfG 946085 ydfG Escherichia coli K12 L-allo-threonine dehydrogenase, NAD(P)-binding NP_416057.1 1625541 D 83333 CDS NP_416058.1 16129499 946087 1626376..1627062 1 NC_000913.2 GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1627062 ydfH 946087 ydfH Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416058.1 1626376 D 83333 CDS NP_416059.1 16129500 948796 1627239..1627442 1 NC_000913.2 conserved protein 1627442 ydfZ 948796 ydfZ Escherichia coli K12 conserved protein NP_416059.1 1627239 D 83333 CDS NP_416060.1 16129501 945861 complement(1627477..1628937) 1 NC_000913.2 putative oxidoreductase; predicted mannonate dehydrogenase 1628937 ydfI 945861 ydfI Escherichia coli K12 predicted mannonate dehydrogenase NP_416060.1 1627477 R 83333 CDS b4600 944802 complement(join(1629026..1630309,1650779..1650862)) 1 NC_000913.2 Qin prophage; predicted protein putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; 1650862 ydfJ 944802 ydfJ Escherichia coli K12 1629026 R 83333 CDS NP_416062.1 16129503 947451 1631063..1631329 1 NC_000913.2 Qin prophage; predicted DNA-binding transcriptional regulator 1631329 ydfK 947451 ydfK Escherichia coli K12 Qin prophage; predicted DNA-binding transcriptional regulator NP_416062.1 1631063 D 83333 CDS NP_416063.1 16129504 946088 1631646..1632236 1 NC_000913.2 Qin prophage; predicted site-specific recombinase 1632236 pinQ 946088 pinQ Escherichia coli K12 Qin prophage; predicted site-specific recombinase NP_416063.1 1631646 D 83333 CDS NP_416064.1 16129505 946060 complement(1632334..1632909) 1 NC_000913.2 tail fiber assembly protein homolog from lambdoid prophage Qin; Qin prophage; predicted tail fibre assembly protein 1632909 tfaQ 946060 tfaQ Escherichia coli K12 Qin prophage; predicted tail fibre assembly protein NP_416064.1 1632334 R 83333 CDS NP_416065.1 16129506 946098 complement(1632909..1633871) 1 NC_000913.2 Qin prophage; predicted side tail fibre assembly protein 1633871 ydfN 946098 ydfN Escherichia coli K12 Qin prophage; predicted side tail fibre assembly protein NP_416065.1 1632909 R 83333 CDS b1548 946021 complement(1633864..1634391) 1 NC_000913.2 Qin prophage; predicted packaging protein;IS, phage, Tn; Phage-related functions and prophages DNA packaging protein NU1 homolog from lambdoid prophage Qin; 1634391 nohA 946021 nohA Escherichia coli K12 1633864 R 83333 CDS YP_588454.1 94541112 1450267 1634780..1635013 1 NC_000913.2 hypothetical protein, Qin prophage 1635013 ynfO 1450267 ynfO Escherichia coli K12 hypothetical protein, Qin prophage YP_588454.1 1634780 D 83333 CDS NP_416067.2 90111292 945992 1635071..1635481 1 NC_000913.2 Qin prophage; predicted protein 1635481 ydfO 945992 ydfO Escherichia coli K12 Qin prophage; predicted protein NP_416067.2 1635071 D 83333 CDS NP_416068.2 90111293 946054 complement(1635633..1635806) 1 NC_000913.2 Qin prophage; predicted protein 1635806 gnsB 946054 gnsB Escherichia coli K12 Qin prophage; predicted protein NP_416068.2 1635633 R 83333 CDS NP_416069.2 90111294 946097 complement(1635978..1636133) 1 NC_000913.2 Qin prophage; predicted protein 1636133 ynfN 946097 ynfN Escherichia coli K12 Qin prophage; predicted protein NP_416069.2 1635978 R 83333 CDS NP_416070.1 16129511 946099 complement(1636479..1636691) 1 NC_000913.2 cold shock-like protein; Qin prophage; cold shock protein 1636691 cspI 946099 cspI Escherichia coli K12 Qin prophage; cold shock protein NP_416070.1 1636479 R 83333 CDS NP_416071.1 16129512 946101 complement(1637054..1637551) 1 NC_000913.2 Qin prophage; conserved protein 1637551 ydfP 946101 ydfP Escherichia coli K12 Qin prophage; conserved protein NP_416071.1 1637054 R 83333 CDS NP_416072.1 16129513 946100 complement(1637548..1638081) 1 NC_000913.2 Qin prophage; predicted lysozyme 1638081 ydfQ 946100 ydfQ Escherichia coli K12 Qin prophage; predicted lysozyme NP_416072.1 1637548 R 83333 CDS NP_416073.1 16129514 946095 complement(1638078..1638389) 1 NC_000913.2 Qin prophage; predicted protein 1638389 ydfR 946095 ydfR Escherichia coli K12 Qin prophage; predicted protein NP_416073.1 1638078 R 83333 CDS NP_416074.4 90111295 946093 complement(1638394..1638609) 1 NC_000913.2 Qin prophage; predicted S lysis protein 1638609 essQ 946093 essQ Escherichia coli K12 Qin prophage; predicted S lysis protein NP_416074.4 1638394 R 83333 CDS NP_416075.1 16129516 946091 complement(1639363..1639578) 1 NC_000913.2 Qin prophage; cold shock protein 1639578 cspB 946091 cspB Escherichia coli K12 Qin prophage; cold shock protein NP_416075.1 1639363 R 83333 CDS NP_416076.1 16129517 946090 1639879..1640091 1 NC_000913.2 Qin prophage; cold shock protein 1640091 cspF 946090 cspF Escherichia coli K12 Qin prophage; cold shock protein NP_416076.1 1639879 D 83333 CDS NP_416077.4 90111296 946103 complement(1640513..1641265) 1 NC_000913.2 Qin prophage; predicted antitermination protein Q 1641265 ydfT 946103 ydfT Escherichia coli K12 Qin prophage; predicted antitermination protein Q NP_416077.4 1640513 R 83333 CDS NP_416078.3 145698264 946108 complement(1641279..1642226) 1 NC_000913.2 Qin prophage; predicted protein 1642226 ydfU 946108 ydfU Escherichia coli K12 Qin prophage; predicted protein NP_416078.3 1641279 R 83333 CDS NP_416079.1 16129520 946109 complement(1642675..1642926) 1 NC_000913.2 Qin prophage; predicted protein 1642926 rem 946109 rem Escherichia coli K12 Qin prophage; predicted protein NP_416079.1 1642675 R 83333 CDS NP_416080.1 16129521 948616 complement(1643143..1643298) 1 NC_000913.2 polypeptide destructive to membrane potential hokD (relF) regulatory elements are deleted, and the gene is fused to the relBE transcript; evolutionary relic?; Qin prophage; small toxic polypeptide 1643298 hokD 948616 hokD Escherichia coli K12 Qin prophage; small toxic polypeptide NP_416080.1 1643143 R 83333 CDS NP_416081.1 16129522 947549 complement(1643370..1643657) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; Qin prophage; toxin of the RelE-RelB toxin-antitoxin system 1643657 relE 947549 relE Escherichia coli K12 Qin prophage; toxin of the RelE-RelB toxin-antitoxin system NP_416081.1 1643370 R 83333 CDS NP_416082.1 16129523 948308 complement(1643657..1643896) 1 NC_000913.2 negative regulator of translation; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor 1643896 relB 948308 relB Escherichia coli K12 Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor NP_416082.1 1643657 R 83333 CDS NP_416083.1 16129524 948801 1643921..1644226 1 NC_000913.2 Qin prophage; predicted protein 1644226 ydfV 948801 ydfV Escherichia coli K12 Qin prophage; predicted protein NP_416083.1 1643921 D 83333 CDS NP_416084.1 16129525 947392 1644429..1644761 1 NC_000913.2 Qin prophage; predicted protein 1644761 flxA 947392 flxA Escherichia coli K12 Qin prophage; predicted protein NP_416084.1 1644429 D 83333 CDS NP_416085.2 145698265 946111 complement(1645146..1645373) 1 NC_000913.2 Qin prophage; predicted protein 1645373 ydfW 946111 ydfW Escherichia coli K12 Qin prophage; predicted protein NP_416085.2 1645146 R 83333 CDS NP_416086.1 16129527 946112 complement(1645370..1645660) 1 NC_000913.2 Qin prophage; predicted protein 1645660 ydfX 946112 ydfX Escherichia coli K12 Qin prophage; predicted protein NP_416086.1 1645370 R 83333 CDS NP_416087.1 16129528 946120 complement(1645644..1645874) 1 NC_000913.2 regulator of dicB; Qin prophage; DNA-binding transcriptional regulator for DicB 1645874 dicC 946120 dicC Escherichia coli K12 Qin prophage; DNA-binding transcriptional regulator for DicB NP_416087.1 1645644 R 83333 CDS NP_416088.1 16129529 946241 1645958..1646365 1 NC_000913.2 regulator of dicB; Qin prophage; predicted regulator for DicB 1646365 dicA 946241 dicA Escherichia coli K12 Qin prophage; predicted regulator for DicB NP_416088.1 1645958 D 83333 CDS NP_416089.1 16129530 946082 1646532..1646687 1 NC_000913.2 Qin prophage; predicted protein 1646687 ydfA 946082 ydfA Escherichia coli K12 Qin prophage; predicted protein NP_416089.1 1646532 D 83333 CDS NP_416090.2 90111298 946176 1646689..1646817 1 NC_000913.2 Qin prophage; predicted protein 1646817 ydfB 946176 ydfB Escherichia coli K12 Qin prophage; predicted protein NP_416090.2 1646689 D 83333 CDS b1573 946107 1646910..1647005 1 NC_000913.2 Qin prophage; predicted protein; 1647005 rzpQ 946107 rzpQ Escherichia coli K12 1646910 D 83333 CDS NP_416092.1 16129533 946110 1647633..1647821 1 NC_000913.2 inhibition of cell division; Qin prophage; cell division inhibition protein 1647821 dicB 946110 dicB Escherichia coli K12 Qin prophage; cell division inhibition protein NP_416092.1 1647633 D 83333 CDS NP_416093.1 16129534 946102 1647818..1648009 1 NC_000913.2 Qin prophage; predicted protein 1648009 ydfD 946102 ydfD Escherichia coli K12 Qin prophage; predicted protein NP_416093.1 1647818 D 83333 CDS b1577 946113 1648102..1648866 1 NC_000913.2 Qin prophage; predicted protein; 1648866 ydfE 946113 ydfE Escherichia coli K12 1648102 D 83333 CDS b1578 946118 1648869..1649561 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB';IS, phage, Tn; Transposon-related functions;8.3 extrachromosomal; transposon related; 1649561 insD 946118 insD Escherichia coli K12 1648869 D 83333 CDS b1579 946130 1649575..1650732 1 NC_000913.2 pseudogene, Qin prophage; predicted defective integrase; 1650732 intQ 946130 intQ Escherichia coli K12 1649575 D 83333 CDS NP_416097.1 16129538 946127 complement(1650920..1651939) 1 NC_000913.2 starvation sensing protein; GO_process: response to starvation [goid 0042594]; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1651939 rspB 946127 rspB Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_416097.1 1650920 R 83333 CDS NP_416098.1 16129539 946126 complement(1651951..1653165) 1 NC_000913.2 starvation sensing protein; GO_process: response to starvation [goid 0042594]; predicted dehydratase 1653165 rspA 946126 rspA Escherichia coli K12 predicted dehydratase NP_416098.1 1651951 R 83333 CDS NP_416099.1 16129540 946125 complement(1653371..1653697) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1653697 ynfA 946125 ynfA Escherichia coli K12 conserved inner membrane protein NP_416099.1 1653371 R 83333 CDS NP_416100.1 16129541 946119 1653832..1654173 1 NC_000913.2 predicted protein 1654173 ynfB 946119 ynfB Escherichia coli K12 predicted protein NP_416100.1 1653832 D 83333 CDS NP_416101.1 16129542 946117 1654208..1654768 1 NC_000913.2 GO_process: polyamine biosynthetic process [goid 0006596]; spermidine N1-acetyltransferase 1654768 speG 946117 speG Escherichia coli K12 spermidine N1-acetyltransferase NP_416101.1 1654208 D 83333 CDS NP_416102.2 90111299 946131 complement(1654771..1655481) 1 NC_000913.2 predicted protein 1655481 ynfC 946131 ynfC Escherichia coli K12 predicted protein NP_416102.2 1654771 R 83333 CDS NP_416103.2 90111300 946133 1655589..1655894 1 NC_000913.2 predicted protein 1655894 ynfD 946133 ynfD Escherichia coli K12 predicted protein NP_416103.2 1655589 D 83333 CDS NP_416104.1 16129545 946135 1656093..1658519 1 NC_000913.2 oxidoreductase subunit 1658519 ynfE 946135 ynfE Escherichia coli K12 oxidoreductase subunit NP_416104.1 1656093 D 83333 CDS NP_416105.3 145698266 945268 1658607..1661003 1 NC_000913.2 oxidoreductase subunit 1661003 ynfF 945268 ynfF Escherichia coli K12 oxidoreductase subunit NP_416105.3 1658607 D 83333 CDS NP_416106.1 16129547 945638 1661014..1661631 1 NC_000913.2 oxidoreductase, Fe-S subunit 1661631 ynfG 945638 ynfG Escherichia coli K12 oxidoreductase, Fe-S subunit NP_416106.1 1661014 D 83333 CDS NP_416107.1 16129548 945822 1661633..1662487 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; oxidoreductase, membrane subunit 1662487 ynfH 945822 ynfH Escherichia coli K12 oxidoreductase, membrane subunit NP_416107.1 1661633 D 83333 CDS NP_416108.2 90111302 945987 1662530..1663144 1 NC_000913.2 twin-argninine leader-binding protein for DmsA and TorA 1663144 dmsD 945987 dmsD Escherichia coli K12 twin-argninine leader-binding protein for DmsA and TorA NP_416108.2 1662530 D 83333 CDS NP_416109.2 90111303 947179 1663339..1664595 1 NC_000913.2 predicted voltage-gated chloride channel 1664595 clcB 947179 clcB Escherichia coli K12 predicted voltage-gated chloride channel NP_416109.2 1663339 D 83333 CDS NP_416110.4 90111304 944927 complement(1664548..1665243) 1 NC_000913.2 GO_process: biotin biosynthetic process [goid 0009102]; predicted dethiobiotin synthetase 1665243 ynfK 944927 ynfK Escherichia coli K12 predicted dethiobiotin synthetase NP_416110.4 1664548 R 83333 CDS NP_416111.1 16129552 945510 complement(1665368..1666588) 1 NC_000913.2 putative NAGC-like transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: polysaccharide biosynthetic process [goid 0000271]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 1666588 dgsA 945510 dgsA Escherichia coli K12 DNA-binding transcriptional repressor NP_416111.1 1665368 R 83333 CDS NP_416112.1 16129553 946136 complement(1666723..1667616) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1667616 ynfL 946136 ynfL Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416112.1 1666723 R 83333 CDS NP_416113.1 16129554 946138 1667723..1668976 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1668976 ynfM 946138 ynfM Escherichia coli K12 predicted transporter NP_416113.1 1667723 D 83333 CDS NP_416114.2 90111305 945103 1669400..1669708 1 NC_000913.2 acid shock protein; GO_process: response to pH [goid 0009268]; acid shock-inducible periplasmic protein 1669708 asr 945103 asr Escherichia coli K12 acid shock-inducible periplasmic protein NP_416114.2 1669400 D 83333 CDS YP_001165320.1 145698267 5061510 1669801..1669884 1 NC_000913.2 hypothetical protein 1669884 ydgU 5061510 ydgU Escherichia coli K12 hypothetical protein YP_001165320.1 1669801 D 83333 CDS NP_416115.1 16129556 946436 1669984..1670805 1 NC_000913.2 predicted peptidase 1670805 ydgD 946436 ydgD Escherichia coli K12 predicted peptidase NP_416115.1 1669984 D 83333 CDS NP_416116.1 16129557 947333 complement(1670844..1671173) 1 NC_000913.2 possible chaperone; multidrug efflux system transporter 1671173 mdtI 947333 mdtI Escherichia coli K12 multidrug efflux system transporter NP_416116.1 1670844 R 83333 CDS NP_416117.1 16129558 946139 complement(1671160..1671525) 1 NC_000913.2 possible chaperone; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system transporter 1671525 mdtJ 946139 mdtJ Escherichia coli K12 multidrug efflux system transporter NP_416117.1 1671160 R 83333 CDS NP_416118.1 16129559 946142 1671937..1672971 1 NC_000913.2 putative transport protein; predicted inner membrane protein 1672971 tqsA 946142 tqsA Escherichia coli K12 predicted inner membrane protein NP_416118.1 1671937 D 83333 CDS NP_416119.1 16129560 946144 complement(1672996..1674384) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; pyridine nucleotide transhydrogenase, beta subunit 1674384 pntB 946144 pntB Escherichia coli K12 pyridine nucleotide transhydrogenase, beta subunit NP_416119.1 1672996 R 83333 CDS NP_416120.1 16129561 946628 complement(1674395..1675927) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; pyridine nucleotide transhydrogenase, alpha subunit 1675927 pntA 946628 pntA Escherichia coli K12 pyridine nucleotide transhydrogenase, alpha subunit NP_416120.1 1674395 R 83333 CDS NP_416121.1 16129562 945117 1676451..1677395 1 NC_000913.2 predicted protein 1677395 ydgH 945117 ydgH Escherichia coli K12 predicted protein NP_416121.1 1676451 D 83333 CDS NP_416122.1 16129563 945159 1677581..1678963 1 NC_000913.2 putative arginine/ornithine antiporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted arginine/ornithine antiporter transporter 1678963 ydgI 945159 ydgI Escherichia coli K12 predicted arginine/ornithine antiporter transporter NP_416122.1 1677581 D 83333 CDS NP_416123.1 16129564 949096 1679000..1679722 1 NC_000913.2 putative oxidoreductase; dihydrofolate reductase isozyme 1679722 folM 949096 folM Escherichia coli K12 dihydrofolate reductase isozyme NP_416123.1 1679000 D 83333 CDS NP_416124.1 16129565 945156 complement(1679719..1680054) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein associated with alginate biosynthesis 1680054 ydgC 945156 ydgC Escherichia coli K12 conserved inner membrane protein associated with alginate biosynthesis NP_416124.1 1679719 R 83333 CDS NP_416125.2 145698268 946199 1680183..1680902 1 NC_000913.2 response transcriptional regulatory protein (RstB sensor); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with RstB 1680902 rstA 946199 rstA Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with RstB NP_416125.2 1680183 D 83333 CDS NP_416126.1 16129567 948870 1680906..1682207 1 NC_000913.2 sensor histidine protein kinase (RstA regulator); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with RstA 1682207 rstB 948870 rstB Escherichia coli K12 sensory histidine kinase in two-component regulatory system with RstA NP_416126.1 1680906 D 83333 CDS NP_416127.1 16129568 945135 1682283..1683212 1 NC_000913.2 DNA-binding protein; inhibition of replication at Ter sites; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; inhibitor of replication at Ter, DNA-binding protein 1683212 tus 945135 tus Escherichia coli K12 inhibitor of replication at Ter, DNA-binding protein NP_416127.1 1682283 D 83333 CDS NP_416128.1 16129569 946147 complement(1683209..1684612) 1 NC_000913.2 fumarase C= fumarate hydratase Class II; isozyme; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate hydratase (fumarase C),aerobic Class II 1684612 fumC 946147 fumC Escherichia coli K12 fumarate hydratase (fumarase C),aerobic Class II NP_416128.1 1683209 R 83333 CDS NP_416129.1 16129570 946826 complement(1684755..1686401) 1 NC_000913.2 fumarase A = fumarate hydratase Class I; aerobic isozyme; GO_process: tricarboxylic acid cycle [goid 0006099]; fumarate hydratase (fumarase A), aerobic Class I 1686401 fumA 946826 fumA Escherichia coli K12 fumarate hydratase (fumarase A), aerobic Class I NP_416129.1 1684755 R 83333 CDS NP_416130.3 49176125 944840 1686600..1687775 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; mannose-6-phosphate isomerase 1687775 manA 944840 manA Escherichia coli K12 mannose-6-phosphate isomerase NP_416130.3 1686600 D 83333 CDS NP_416131.1 16129572 946172 1687876..1689384 1 NC_000913.2 conserved protein 1689384 ydgA 946172 ydgA Escherichia coli K12 conserved protein NP_416131.1 1687876 D 83333 CDS NP_416132.2 90111306 944820 complement(1689610..1690875) 1 NC_000913.2 membrane-associated protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane porin protein 1690875 uidC 944820 uidC Escherichia coli K12 predicted outer membrane porin protein NP_416132.2 1689610 R 83333 CDS b1616 947484 complement(1690914..1692287) 1 NC_000913.2 glucuronide transporter;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols glucuronide permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; 1692287 uidB 947484 uidB Escherichia coli K12 1690914 R 83333 CDS NP_416134.1 16129575 946149 complement(1692284..1694095) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; beta-D-glucuronidase 1694095 uidA 946149 uidA Escherichia coli K12 beta-D-glucuronidase NP_416134.1 1692284 R 83333 CDS NP_416135.1 16129576 946150 complement(1694486..1695076) 1 NC_000913.2 repressor for uid operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 1695076 uidR 946150 uidR Escherichia coli K12 DNA-binding transcriptional repressor NP_416135.1 1694486 R 83333 CDS NP_416136.1 16129577 946151 complement(1695297..1696064) 1 NC_000913.2 NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids; GO_component: cytoplasm [goid 0005737]; 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent 1696064 hdhA 946151 hdhA Escherichia coli K12 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent NP_416136.1 1695297 R 83333 CDS NP_416137.1 16129578 947104 complement(1696176..1697204) 1 NC_000913.2 maltose regulon regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 1697204 malI 947104 malI Escherichia coli K12 DNA-binding transcriptional repressor NP_416137.1 1696176 R 83333 CDS NP_416138.1 16129579 946009 1697379..1698971 1 NC_000913.2 PTS system, maltose and glucose-specific IIABC component; GO_process: carbohydrate catabolic process [goid 0016052]; fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component 1698971 malX 946009 malX Escherichia coli K12 fused maltose and glucose-specific PTS enzymes: IIB component -! IIC component NP_416138.1 1697379 D 83333 CDS NP_416139.1 16129580 945937 1698981..1700153 1 NC_000913.2 cystathionine beta-lyase; maltose regulon modulator; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon 1700153 malY 945937 malY Escherichia coli K12 bifunctional beta-cystathionase, PLP-dependent/ regulator of maltose regulon NP_416139.1 1698981 D 83333 CDS NP_416140.1 16129581 945851 1700257..1701258 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; adenosine deaminase 1701258 add 945851 add Escherichia coli K12 adenosine deaminase NP_416140.1 1700257 D 83333 CDS NP_416141.4 90111307 947164 complement(1701292..1702332) 1 NC_000913.2 predicted oxidoreductase 1702332 ydgJ 947164 ydgJ Escherichia coli K12 predicted oxidoreductase NP_416141.4 1701292 R 83333 CDS YP_025303.1 49176127 2847682 1702575..1702700 1 NC_000913.2 beta-lactam resistance protein; beta-lactam resistance membrane protein 1702700 blr 2847682 blr Escherichia coli K12 beta-lactam resistance membrane protein YP_025303.1 1702575 D 83333 CDS NP_416142.1 16129583 946152 1702973..1703188 1 NC_000913.2 predicted regulator 1703188 cnu 946152 cnu Escherichia coli K12 predicted regulator NP_416142.1 1702973 D 83333 CDS NP_416143.2 90111308 946154 1703274..1703714 1 NC_000913.2 conserved inner membrane protein 1703714 ydgK 946154 ydgK Escherichia coli K12 conserved inner membrane protein NP_416143.2 1703274 D 83333 CDS NP_416144.1 16129585 946148 1703791..1704372 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane subunit 1704372 rsxA 946148 rsxA Escherichia coli K12 predicted inner membrane subunit NP_416144.1 1703791 D 83333 CDS NP_416145.1 16129586 946146 1704372..1704950 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; predicted iron-sulfur protein 1704950 rsxB 946146 rsxB Escherichia coli K12 predicted iron-sulfur protein NP_416145.1 1704372 D 83333 CDS NP_416146.1 16129587 946137 1704943..1707165 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted 4Fe-4S ferredoxin-type protein/conserved protein 1707165 rsxC 946137 rsxC Escherichia coli K12 fused predicted 4Fe-4S ferredoxin-type protein/conserved protein NP_416146.1 1704943 D 83333 CDS NP_416147.1 16129588 946134 1707166..1708224 1 NC_000913.2 electron transport complex protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane oxidoreductase 1708224 rsxD 946134 rsxD Escherichia coli K12 predicted inner membrane oxidoreductase NP_416147.1 1707166 D 83333 CDS NP_416148.1 16129589 946158 1708228..1708848 1 NC_000913.2 predicted oxidoreductase 1708848 rsxG 946158 rsxG Escherichia coli K12 predicted oxidoreductase NP_416148.1 1708228 D 83333 CDS NP_416149.1 16129590 947509 1708852..1709547 1 NC_000913.2 electron transport complex protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane NADH-quinone reductase 1709547 rsxE 947509 rsxE Escherichia coli K12 predicted inner membrane NADH-quinone reductase NP_416149.1 1708852 D 83333 CDS NP_416150.1 16129591 947122 1709547..1710182 1 NC_000913.2 endonuclease III; specific for apurinic and/or apyrimidinic sites; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: response to radiation [goid 0009314]; DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 1710182 nth 947122 nth Escherichia coli K12 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) NP_416150.1 1709547 D 83333 CDS NP_416151.1 16129592 947436 1710793..1712295 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1712295 tppB 947436 tppB Escherichia coli K12 predicted transporter NP_416151.1 1710793 D 83333 CDS NP_416152.1 16129593 945758 1712401..1713006 1 NC_000913.2 glutathionine S-transferase 1713006 gst 945758 gst Escherichia coli K12 glutathionine S-transferase NP_416152.1 1712401 D 83333 CDS NP_416153.1 16129594 946162 complement(1713050..1713913) 1 NC_000913.2 pyridoxal kinase 2 / pyridoxine kinase; pyridoxal kinase 2/pyridoxine kinase 1713913 pdxY 946162 pdxY Escherichia coli K12 pyridoxal kinase 2/pyridoxine kinase NP_416153.1 1713050 R 83333 CDS NP_416154.1 16129595 948855 complement(1713972..1715246) 1 NC_000913.2 tyrosine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; tyrosyl-tRNA synthetase 1715246 tyrS 948855 tyrS Escherichia coli K12 tyrosyl-tRNA synthetase NP_416154.1 1713972 R 83333 CDS NP_416155.1 16129596 946806 complement(1715375..1716031) 1 NC_000913.2 pyridoxinephosphate oxidase; GO_process: pyridoxine biosynthetic process [goid 0008615]; pyridoxine 5'-phosphate oxidase 1716031 pdxH 946806 pdxH Escherichia coli K12 pyridoxine 5'-phosphate oxidase NP_416155.1 1715375 R 83333 CDS NP_416156.4 90111309 946811 complement(1716090..1716419) 1 NC_000913.2 predicted lipoprotein 1716419 ydhA 946811 ydhA Escherichia coli K12 predicted lipoprotein NP_416156.4 1716090 R 83333 CDS NP_416157.1 16129598 946810 complement(1716517..1717626) 1 NC_000913.2 conserved protein 1717626 anmK 946810 anmK Escherichia coli K12 conserved protein NP_416157.1 1716517 R 83333 CDS YP_025304.1 49176129 946801 1717900..1718367 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; outer membrane lipoprotein 1718367 slyB 946801 slyB Escherichia coli K12 outer membrane lipoprotein YP_025304.1 1717900 D 83333 CDS NP_416159.2 90111310 946167 complement(1718414..1718848) 1 NC_000913.2 transcriptional regulator for cryptic hemolysin; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 1718848 slyA 946167 slyA Escherichia coli K12 DNA-binding transcriptional activator NP_416159.2 1718414 R 83333 CDS NP_416160.1 16129601 947559 1719049..1719285 1 NC_000913.2 predicted inner membrane protein 1719285 ydhI 947559 ydhI Escherichia coli K12 predicted inner membrane protein NP_416160.1 1719049 D 83333 CDS NP_416161.4 90111311 946499 1719288..1720145 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; undecaprenyl pyrophosphate phosphatase 1720145 ydhJ 946499 ydhJ Escherichia coli K12 undecaprenyl pyrophosphate phosphatase NP_416161.4 1719288 D 83333 CDS NP_416162.1 16129603 946528 1720145..1722157 1 NC_000913.2 conserved inner membrane protein 1722157 ydhK 946528 ydhK Escherichia coli K12 conserved inner membrane protein NP_416162.1 1720145 D 83333 CDS NP_416163.1 16129604 945343 complement(1722158..1722679) 1 NC_000913.2 superoxide dismutase precursor (Cu-Zn); GO_component: periplasmic space [goid 0042597]; GO_process: xenobiotic metabolic process [goid 0006805]; superoxide dismutase, Cu, Zn 1722679 sodC 945343 sodC Escherichia coli K12 superoxide dismutase, Cu, Zn NP_416163.1 1722158 R 83333 CDS YP_025305.1 49176131 946960 complement(1722760..1723656) 1 NC_000913.2 predicted oxidoreductase 1723656 ydhF 946960 ydhF Escherichia coli K12 predicted oxidoreductase YP_025305.1 1722760 R 83333 CDS NP_416165.2 90111312 946168 complement(1723705..1723944) 1 NC_000913.2 conserved protein 1723944 ydhL 946168 ydhL Escherichia coli K12 conserved protein NP_416165.2 1723705 R 83333 CDS NP_416166.3 145698269 946166 1724047..1724646 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1724646 ydhM 946166 ydhM Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416166.3 1724047 D 83333 CDS NP_416167.1 16129608 946164 1724683..1725780 1 NC_000913.2 N-ethylmaleimide reductase; GO_process: xenobiotic metabolic process [goid 0006805]; N-ethylmaleimide reductase, FMN-linked 1725780 nemA 946164 nemA Escherichia coli K12 N-ethylmaleimide reductase, FMN-linked NP_416167.1 1724683 D 83333 CDS NP_416168.1 16129609 946161 1725861..1726268 1 NC_000913.2 lactoylglutathione lyase; GO_process: methylglyoxal metabolic process [goid 0009438]; glyoxalase I, Ni-dependent 1726268 gloA 946161 gloA Escherichia coli K12 glyoxalase I, Ni-dependent NP_416168.1 1725861 D 83333 CDS NP_416169.1 16129610 946159 1726371..1727018 1 NC_000913.2 RNase T, degrades tRNA; GO_process: RNA catabolic process [goid 0006401]; GO_process: DNA catabolic process [goid 0006308]; ribonuclease T (RNase T) 1727018 rnt 946159 rnt Escherichia coli K12 ribonuclease T (RNase T) NP_416169.1 1726371 D 83333 CDS NP_416170.1 16129611 946156 1727111..1731727 1 NC_000913.2 member of ATP-dependent helicase superfamily II; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; predicted ATP-dependent helicase 1731727 lhr 946156 lhr Escherichia coli K12 predicted ATP-dependent helicase NP_416170.1 1727111 D 83333 CDS NP_416171.1 16129612 946169 complement(1731778..1732125) 1 NC_000913.2 conserved protein 1732125 grxD 946169 grxD Escherichia coli K12 conserved protein NP_416171.1 1731778 R 83333 CDS NP_416172.1 16129613 945210 1732459..1733274 1 NC_000913.2 putative lipoprotein; predicted lipoprotein 1733274 ydhO 945210 ydhO Escherichia coli K12 predicted lipoprotein NP_416172.1 1732459 D 83333 CDS NP_416173.1 16129614 944953 1733402..1733983 1 NC_000913.2 superoxide dismutase, iron; GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; superoxide dismutase, Fe 1733983 sodB 944953 sodB Escherichia coli K12 superoxide dismutase, Fe NP_416173.1 1733402 D 83333 CDS NP_416174.1 16129615 947340 complement(1734145..1735314) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1735314 ydhP 947340 ydhP Escherichia coli K12 predicted transporter NP_416174.1 1734145 R 83333 CDS YP_001165321.1 145698270 5061505 complement(1735480..1735569) 1 NC_000913.2 hypothetical protein 1735569 ynhF 5061505 ynhF Escherichia coli K12 hypothetical protein YP_001165321.1 1735480 R 83333 CDS NP_416175.1 16129616 945226 1735868..1736893 1 NC_000913.2 transcriptional repressor for pur regulon, glyA, glnB, prsA, speA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: histidine biosynthetic process [goid 0000105]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, hypoxanthine-binding 1736893 purR 945226 purR Escherichia coli K12 DNA-binding transcriptional repressor, hypoxanthine-binding NP_416175.1 1735868 D 83333 CDS NP_416176.1 16129617 945208 complement(1736890..1737822) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1737822 ydhB 945208 ydhB Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416176.1 1736890 R 83333 CDS YP_025306.1 49176132 946077 1737935..1739146 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1739146 ydhC 946077 ydhC Escherichia coli K12 predicted transporter YP_025306.1 1737935 D 83333 CDS NP_416178.1 16129619 944811 1739437..1740585 1 NC_000913.2 cyclopropane fatty acyl phospholipid synthase; cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) 1740585 cfa 944811 cfa Escherichia coli K12 cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) NP_416178.1 1739437 D 83333 CDS NP_416179.1 16129620 945848 complement(1740625..1741266) 1 NC_000913.2 riboflavin synthase, alpha chain; riboflavin synthase, alpha subunit 1741266 ribC 945848 ribC Escherichia coli K12 riboflavin synthase, alpha subunit NP_416179.1 1740625 R 83333 CDS YP_025307.1 49176133 945883 1741481..1742854 1 NC_000913.2 multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug-efflux transporter); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system transporter 1742854 mdtK 945883 mdtK Escherichia coli K12 multidrug efflux system transporter YP_025307.1 1741481 D 83333 CDS NP_416181.1 16129622 944851 complement(1742895..1744151) 1 NC_000913.2 possible enzyme; conserved protein 1744151 ydhQ 944851 ydhQ Escherichia coli K12 conserved protein NP_416181.1 1742895 R 83333 CDS NP_416182.1 16129623 946177 1744724..1745029 1 NC_000913.2 predicted protein 1745029 ydhR 946177 ydhR Escherichia coli K12 predicted protein NP_416182.1 1744724 D 83333 CDS NP_416183.1 16129624 945786 1745155..1746759 1 NC_000913.2 conserved protein with FAD/NAD(P)-binding domain 1746759 ydhS 945786 ydhS Escherichia coli K12 conserved protein with FAD/NAD(P)-binding domain NP_416183.1 1745155 D 83333 CDS NP_416184.1 16129625 945960 complement(1746771..1747583) 1 NC_000913.2 conserved protein 1747583 ydhT 945960 ydhT Escherichia coli K12 conserved protein NP_416184.1 1746771 R 83333 CDS NP_416185.1 16129626 945608 complement(1747587..1748372) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cytochrome 1748372 ydhU 945608 ydhU Escherichia coli K12 predicted cytochrome NP_416185.1 1747587 R 83333 CDS NP_416186.3 145698271 947308 complement(1748369..1749088) 1 NC_000913.2 putative oxidoreductase, Fe-S subunit; predicted 4Fe-4S ferridoxin-type protein 1749088 ydhX 947308 ydhX Escherichia coli K12 predicted 4Fe-4S ferridoxin-type protein NP_416186.3 1748369 R 83333 CDS NP_416187.1 16129628 947180 complement(1749101..1749748) 1 NC_000913.2 predicted protein 1749748 ydhW 947180 ydhW Escherichia coli K12 predicted protein NP_416187.1 1749101 R 83333 CDS NP_416188.1 16129629 948756 complement(1749752..1751854) 1 NC_000913.2 predicted oxidoreductase 1751854 ydhV 948756 ydhV Escherichia coli K12 predicted oxidoreductase NP_416188.1 1749752 R 83333 CDS NP_416189.1 16129630 948749 complement(1751875..1752501) 1 NC_000913.2 putative oxidoreductase, Fe-S subunit; predicted 4Fe-4S ferridoxin-type protein 1752501 ydhY 948749 ydhY Escherichia coli K12 predicted 4Fe-4S ferridoxin-type protein NP_416189.1 1751875 R 83333 CDS NP_416190.1 16129631 946180 complement(1752956..1753165) 1 NC_000913.2 predicted protein 1753165 ydhZ 946180 ydhZ Escherichia coli K12 predicted protein NP_416190.1 1752956 R 83333 CDS NP_416191.1 16129632 946179 1753722..1755134 1 NC_000913.2 pyruvate kinase I (formerly F), fructose stimulated; GO_process: glycolysis [goid 0006096]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; pyruvate kinase I 1755134 pykF 946179 pykF Escherichia coli K12 pyruvate kinase I NP_416191.1 1753722 D 83333 CDS NP_416192.1 16129633 946175 1755445..1755681 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; murein lipoprotein 1755681 lpp 946175 lpp Escherichia coli K12 murein lipoprotein NP_416192.1 1755445 D 83333 CDS NP_416193.1 16129634 946174 complement(1755745..1756749) 1 NC_000913.2 conserved protein 1756749 ynhG 946174 ynhG Escherichia coli K12 conserved protein NP_416193.1 1755745 R 83333 CDS NP_416194.1 16129635 946173 complement(1756898..1757314) 1 NC_000913.2 sulfur acceptor protein 1757314 sufE 946173 sufE Escherichia coli K12 sulfur acceptor protein NP_416194.1 1756898 R 83333 CDS NP_416195.1 16129636 946185 complement(1757327..1758547) 1 NC_000913.2 selenocysteine lyase, PLP-dependent 1758547 sufS 946185 sufS Escherichia coli K12 selenocysteine lyase, PLP-dependent NP_416195.1 1757327 R 83333 CDS NP_416196.1 16129637 944878 complement(1758544..1759815) 1 NC_000913.2 component of SufBCD complex 1759815 sufD 944878 sufD Escherichia coli K12 component of SufBCD complex NP_416196.1 1758544 R 83333 CDS NP_416197.1 16129638 946128 complement(1759790..1760536) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; component of SufBCD complex, ATP-binding component of ABC superfamily 1760536 sufC 946128 sufC Escherichia coli K12 component of SufBCD complex, ATP-binding component of ABC superfamily NP_416197.1 1759790 R 83333 CDS NP_416198.2 90111315 945753 complement(1760546..1762033) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; component of SufBCD complex 1762033 sufB 945753 sufB Escherichia coli K12 component of SufBCD complex NP_416198.2 1760546 R 83333 CDS NP_416199.1 16129640 949014 complement(1762042..1762410) 1 NC_000913.2 Fe-S cluster assembly protein 1762410 sufA 949014 sufA Escherichia coli K12 Fe-S cluster assembly protein NP_416199.1 1762042 R 83333 CDS NP_416200.1 16129641 946194 complement(1762958..1763227) 1 NC_000913.2 predicted protein 1763227 ydiH 946194 ydiH Escherichia coli K12 predicted protein NP_416200.1 1762958 R 83333 CDS NP_416201.1 16129642 946190 complement(1763246..1763656) 1 NC_000913.2 conserved protein 1763656 ydiI 946190 ydiI Escherichia coli K12 conserved protein NP_416201.1 1763246 R 83333 CDS NP_416202.1 16129643 946189 complement(1763653..1766709) 1 NC_000913.2 putative oxidase; predicted FAD-linked oxidoreductase 1766709 ydiJ 946189 ydiJ Escherichia coli K12 predicted FAD-linked oxidoreductase NP_416202.1 1763653 R 83333 CDS NP_416203.1 16129644 946183 1767098..1768210 1 NC_000913.2 predicted inner membrane protein 1768210 ydiK 946183 ydiK Escherichia coli K12 predicted inner membrane protein NP_416203.1 1767098 D 83333 CDS NP_416204.2 90111316 946181 1768639..1768995 1 NC_000913.2 conserved protein 1768995 ydiL 946181 ydiL Escherichia coli K12 conserved protein NP_416204.2 1768639 D 83333 CDS NP_416205.1 16129646 946196 1769095..1770309 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1770309 ydiM 946196 ydiM Escherichia coli K12 predicted transporter NP_416205.1 1769095 D 83333 CDS NP_416206.5 145698272 946198 1770530..1771801 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1771801 ydiN 946198 ydiN Escherichia coli K12 predicted transporter NP_416206.5 1770530 D 83333 CDS NP_416207.1 16129648 946200 1771813..1772679 1 NC_000913.2 putative oxidoreductase; quinate/shikimate 5-dehydrogenase, NAD(P)-binding 1772679 ydiB 946200 ydiB Escherichia coli K12 quinate/shikimate 5-dehydrogenase, NAD(P)-binding NP_416207.1 1771813 D 83333 CDS NP_416208.1 16129649 946210 1772710..1773468 1 NC_000913.2 GO_process: chorismate biosynthetic process [goid 0009423]; 3-dehydroquinate dehydratase 1773468 aroD 946210 aroD Escherichia coli K12 3-dehydroquinate dehydratase NP_416208.1 1772710 D 83333 CDS NP_416209.1 16129650 946211 1773611..1775206 1 NC_000913.2 putative enzyme; GO_process: fatty acid oxidation [goid 0019395]; fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit 1775206 ydiF 946211 ydiF Escherichia coli K12 fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit NP_416209.1 1773611 D 83333 CDS NP_416210.4 90111318 945626 1775220..1776371 1 NC_000913.2 putative oxidoreductase; predicted acyl-CoA dehydrogenase 1776371 ydiO 945626 ydiO Escherichia coli K12 predicted acyl-CoA dehydrogenase NP_416210.4 1775220 D 83333 CDS NP_416211.1 16129652 945095 complement(1776414..1777325) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1777325 ydiP 945095 ydiP Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416211.1 1776414 R 83333 CDS NP_416212.1 16129653 946482 1777641..1778405 1 NC_000913.2 putative transport protein; conserved protein 1778405 ydiQ 946482 ydiQ Escherichia coli K12 conserved protein NP_416212.1 1777641 D 83333 CDS NP_416213.1 16129654 945688 1778425..1779363 1 NC_000913.2 putative flavoprotein; GO_function: electron carrier activity [goid 0009055]; predicted electron transfer flavoprotein, FAD-binding 1779363 ydiR 945688 ydiR Escherichia coli K12 predicted electron transfer flavoprotein, FAD-binding NP_416213.1 1778425 D 83333 CDS NP_416214.1 16129655 946212 1779419..1780708 1 NC_000913.2 flavoprotein; probably electron transport; GO_function: electron carrier activity [goid 0009055]; predicted oxidoreductase with FAD/NAD(P)-binding domain 1780708 ydiS 946212 ydiS Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain NP_416214.1 1779419 D 83333 CDS NP_416215.1 16129656 946214 1780705..1780998 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; predicted 4Fe-4S ferredoxin-type protein 1780998 ydiT 946214 ydiT Escherichia coli K12 predicted 4Fe-4S ferredoxin-type protein NP_416215.1 1780705 D 83333 CDS NP_416216.4 145698273 946213 1781055..1782701 1 NC_000913.2 putative ligase/synthetase; short chain acyl-CoA synthetase, anaerobic 1782701 fadK 946213 fadK Escherichia coli K12 short chain acyl-CoA synthetase, anaerobic NP_416216.4 1781055 D 83333 CDS NP_416217.1 16129658 946209 complement(1782758..1785136) 1 NC_000913.2 GO_process: gluconeogenesis [goid 0006094]; phosphoenolpyruvate synthase 1785136 pps 946209 pps Escherichia coli K12 phosphoenolpyruvate synthase NP_416217.1 1782758 R 83333 CDS NP_416218.1 16129659 946207 1785469..1786302 1 NC_000913.2 conserved protein 1786302 ydiA 946207 ydiA Escherichia coli K12 conserved protein NP_416218.1 1785469 D 83333 CDS NP_416219.1 16129660 946229 1786459..1787505 1 NC_000913.2 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible); GO_process: tryptophan biosynthetic process [goid 0000162]; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible 1787505 aroH 946229 aroH Escherichia coli K12 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible NP_416219.1 1786459 D 83333 CDS NP_416220.1 16129661 946205 1787637..1787828 1 NC_000913.2 conserved protein 1787828 ydiE 946205 ydiE Escherichia coli K12 conserved protein NP_416220.1 1787637 D 83333 CDS NP_416221.1 16129662 946219 complement(1787832..1789268) 1 NC_000913.2 conserved protein 1789268 ydiU 946219 ydiU Escherichia coli K12 conserved protein NP_416221.1 1787832 R 83333 CDS NP_416222.1 16129663 946217 complement(1789331..1790044) 1 NC_000913.2 conserved protein 1790044 ydiV 946217 ydiV Escherichia coli K12 conserved protein NP_416222.1 1789331 R 83333 CDS NP_416223.1 16129664 946220 complement(1790291..1790755) 1 NC_000913.2 lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lipoprotein 1790755 nlpC 946220 nlpC Escherichia coli K12 predicted lipoprotein NP_416223.1 1790291 R 83333 CDS NP_416224.1 16129665 945751 complement(1790833..1791582) 1 NC_000913.2 ATP-binding component of vitamin B12 transport system; GO_component: cytoplasm [goid 0005737]; vitamin B12 transporter subunit : ATP-binding component of ABC superfamily 1791582 btuD 945751 btuD Escherichia coli K12 vitamin B12 transporter subunit : ATP-binding component of ABC superfamily NP_416224.1 1790833 R 83333 CDS NP_416225.1 16129666 945915 complement(1791582..1792133) 1 NC_000913.2 vitamin B12 transport; GO_component: periplasmic space [goid 0042597]; predicted glutathione peroxidase 1792133 btuE 945915 btuE Escherichia coli K12 predicted glutathione peroxidase NP_416225.1 1791582 R 83333 CDS NP_416226.1 16129667 945877 complement(1792196..1793176) 1 NC_000913.2 vitamin B12 transport permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; vitamin B12 transporter subunit: membrane component of ABC superfamily 1793176 btuC 945877 btuC Escherichia coli K12 vitamin B12 transporter subunit: membrane component of ABC superfamily NP_416226.1 1792196 R 83333 CDS NP_416227.1 16129668 945472 complement(1793277..1793576) 1 NC_000913.2 integration host factor (IHF), alpha subunit; site specific recombination; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; integration host factor (IHF), DNA-binding protein, alpha subunit 1793576 ihfA 945472 ihfA Escherichia coli K12 integration host factor (IHF), DNA-binding protein, alpha subunit NP_416227.1 1793277 R 83333 CDS NP_416228.1 16129669 945382 complement(1793581..1795968) 1 NC_000913.2 phenylalanine tRNA synthetase, beta-subunit; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; phenylalanine tRNA synthetase, beta subunit 1795968 pheT 945382 pheT Escherichia coli K12 phenylalanine tRNA synthetase, beta subunit NP_416228.1 1793581 R 83333 CDS NP_416229.1 16129670 946223 complement(1795983..1796966) 1 NC_000913.2 phenylalanine tRNA synthetase, alpha-subunit; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; phenylalanine tRNA synthetase, alpha subunit 1796966 pheS 946223 pheS Escherichia coli K12 phenylalanine tRNA synthetase, alpha subunit NP_416229.1 1795983 R 83333 CDS NP_416230.1 16129671 947212 complement(1797250..1797294) 1 NC_000913.2 phenylalanyl-tRNA synthetase (pheST) operon leader peptide; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; phenylalanyl-tRNA synthetase operon leader peptide 1797294 pheM 947212 pheM Escherichia coli K12 phenylalanyl-tRNA synthetase operon leader peptide NP_416230.1 1797250 R 83333 CDS NP_416231.1 16129672 945152 complement(1797417..1797773) 1 NC_000913.2 50S ribosomal subunit protein L20, and regulator; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L20 1797773 rplT 945152 rplT Escherichia coli K12 50S ribosomal subunit protein L20 NP_416231.1 1797417 R 83333 CDS NP_416232.3 49176137 946349 complement(1797826..1798023) 1 NC_000913.2 50S ribosomal subunit protein A; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L35 1798023 rpmI 946349 rpmI Escherichia coli K12 50S ribosomal subunit protein L35 NP_416232.3 1797826 R 83333 CDS NP_416233.1 16129674 946225 complement(1798120..1798662) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; protein chain initiation factor IF-3 1798662 infC 946225 infC Escherichia coli K12 protein chain initiation factor IF-3 NP_416233.1 1798120 R 83333 CDS NP_416234.1 16129675 946222 complement(1798666..1800594) 1 NC_000913.2 threonine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; threonyl-tRNA synthetase 1800594 thrS 946222 thrS Escherichia coli K12 threonyl-tRNA synthetase NP_416234.1 1798666 R 83333 CDS b4494 948935 join(1801118..1801543,1801542..1803017) 1 NC_000913.2 Putative regulatory protein with ankyrin repeats; 1803017 arpB 948935 arpB Escherichia coli K12 1801118 D 83333 CDS YP_588455.2 145698274 1450269 1803189..1803296 1 NC_000913.2 predicted protein 1803296 yniD 1450269 yniD Escherichia coli K12 predicted protein YP_588455.2 1803189 D 83333 CDS NP_416236.1 16129676 946218 complement(1803349..1804107) 1 NC_000913.2 conserved protein 1804107 ydiY 946218 ydiY Escherichia coli K12 conserved protein NP_416236.1 1803349 R 83333 CDS NP_416237.3 49176138 946230 1804394..1805323 1 NC_000913.2 6-phosphofructokinase II; suppressor of pfkA; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 6-phosphofructokinase II 1805323 pfkB 946230 pfkB Escherichia coli K12 6-phosphofructokinase II NP_416237.3 1804394 D 83333 CDS NP_416238.1 16129678 946232 1805424..1805714 1 NC_000913.2 predicted protein 1805714 ydiZ 946232 ydiZ Escherichia coli K12 predicted protein NP_416238.1 1805424 D 83333 CDS NP_416239.1 16129679 946236 1805820..1806680 1 NC_000913.2 predicted phosphotransferase/kinase 1806680 yniA 946236 yniA Escherichia coli K12 predicted phosphotransferase/kinase NP_416239.1 1805820 D 83333 CDS NP_416240.1 16129680 945140 complement(1806721..1807257) 1 NC_000913.2 predicted inner membrane protein 1807257 yniB 945140 yniB Escherichia coli K12 predicted inner membrane protein NP_416240.1 1806721 R 83333 CDS NP_416241.1 16129681 945632 1807404..1808072 1 NC_000913.2 putative phosphatase; predicted hydrolase 1808072 yniC 945632 yniC Escherichia coli K12 predicted hydrolase NP_416241.1 1807404 D 83333 CDS NP_416242.5 145698275 945644 1808223..1808825 1 NC_000913.2 GO_process: SOS response [goid 0009432]; predicted inner membrane protein regulated by LexA 1808825 ydjM 945644 ydjM Escherichia coli K12 predicted inner membrane protein regulated by LexA NP_416242.5 1808223 D 83333 CDS NP_416243.1 16129683 946238 1808958..1810349 1 NC_000913.2 predicted transporter 1810349 ydjN 946238 ydjN Escherichia coli K12 predicted transporter NP_416243.1 1808958 D 83333 CDS NP_416244.1 16129684 946237 complement(1810353..1811168) 1 NC_000913.2 predicted protein 1811168 ydjO 946237 ydjO Escherichia coli K12 predicted protein NP_416244.1 1810353 R 83333 CDS NP_416245.2 145698276 946235 complement(1811445..1811687) 1 NC_000913.2 cell division modulator 1811687 cedA 946235 cedA Escherichia coli K12 cell division modulator NP_416245.2 1811445 R 83333 CDS YP_025308.1 49176140 946234 1811891..1814152 1 NC_000913.2 catalase; hydroperoxidase HPII(III); GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; hydroperoxidase HPII(III) (catalase) 1814152 katE 946234 katE Escherichia coli K12 hydroperoxidase HPII(III) (catalase) YP_025308.1 1811891 D 83333 CDS NP_416247.1 16129687 946231 complement(1814410..1815159) 1 NC_000913.2 conserved protein 1815159 chbG 946231 chbG Escherichia coli K12 conserved protein NP_416247.1 1814410 R 83333 CDS NP_416248.1 16129688 946266 complement(1815172..1816524) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; cryptic phospho-beta-glucosidase, NAD(P)-binding 1816524 chbF 946266 chbF Escherichia coli K12 cryptic phospho-beta-glucosidase, NAD(P)-binding NP_416248.1 1815172 R 83333 CDS NP_416249.1 16129689 946247 complement(1816629..1817471) 1 NC_000913.2 negative transcriptional regulator of cel operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 1817471 chbR 946247 chbR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_416249.1 1816629 R 83333 CDS NP_416250.1 16129690 946244 complement(1817479..1817829) 1 NC_000913.2 PTS family enzyme IIA, cellobiose/arbutin/salicin sugar-specific; GO_process: carbohydrate catabolic process [goid 0016052]; N,N'-diacetylchitobiose-specific enzyme IIA component of PTS 1817829 chbA 946244 chbA Escherichia coli K12 N,N'-diacetylchitobiose-specific enzyme IIA component of PTS NP_416250.1 1817479 R 83333 CDS NP_416251.1 16129691 945982 complement(1817880..1819238) 1 NC_000913.2 PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; N,N'-diacetylchitobiose-specific enzyme IIC component of PTS 1819238 chbC 945982 chbC Escherichia coli K12 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS NP_416251.1 1817880 R 83333 CDS NP_416252.1 16129692 945339 complement(1819323..1819643) 1 NC_000913.2 PTS family enzyme IIB, cellobiose/arbutin/salicin sugar-specific; GO_process: carbohydrate catabolic process [goid 0016052]; N,N'-diacetylchitobiose-specific enzyme IIB component of PTS 1819643 chbB 945339 chbB Escherichia coli K12 N,N'-diacetylchitobiose-specific enzyme IIB component of PTS NP_416252.1 1819323 R 83333 CDS NP_416253.1 16129693 945305 complement(1819942..1820280) 1 NC_000913.2 activator of ntrL gene; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; DNA-binding transcriptional activator 1820280 osmE 945305 osmE Escherichia coli K12 DNA-binding transcriptional activator NP_416253.1 1819942 R 83333 CDS NP_416254.1 16129694 946946 1820482..1821309 1 NC_000913.2 NAD synthetase, prefers NH3 over glutamine; GO_process: NAD biosynthetic process [goid 0009435]; NAD synthetase, NH3/glutamine-dependent 1821309 nadE 946946 nadE Escherichia coli K12 NAD synthetase, NH3/glutamine-dependent NP_416254.1 1820482 D 83333 CDS NP_416255.1 16129695 948996 1821539..1822426 1 NC_000913.2 putative excinuclease subunit; endonuclease of nucleotide excision repair 1822426 cho 948996 cho Escherichia coli K12 endonuclease of nucleotide excision repair NP_416255.1 1821539 D 83333 CDS NP_416256.2 90111320 946245 complement(1822386..1822961) 1 NC_000913.2 conserved protein 1822961 ves 946245 ves Escherichia coli K12 conserved protein NP_416256.2 1822386 R 83333 CDS NP_416257.1 16129697 946253 complement(1823164..1823649) 1 NC_000913.2 periplasmic protein related to spheroblast formation; GO_component: periplasmic space [goid 0042597]; envelope stress induced periplasmic protein 1823649 spy 946253 spy Escherichia coli K12 envelope stress induced periplasmic protein NP_416257.1 1823164 R 83333 CDS NP_416258.1 16129698 946256 complement(1823979..1824947) 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; succinylglutamate desuccinylase 1824947 astE 946256 astE Escherichia coli K12 succinylglutamate desuccinylase NP_416258.1 1823979 R 83333 CDS NP_416259.1 16129699 946259 complement(1824940..1826283) 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; succinylarginine dihydrolase 1826283 astB 946259 astB Escherichia coli K12 succinylarginine dihydrolase NP_416259.1 1824940 R 83333 CDS NP_416260.1 16129700 946260 complement(1826280..1827758) 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; succinylglutamic semialdehyde dehydrogenase 1827758 astD 946260 astD Escherichia coli K12 succinylglutamic semialdehyde dehydrogenase NP_416260.1 1826280 R 83333 CDS NP_416261.1 16129701 946261 complement(1827755..1828789) 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; arginine succinyltransferase 1828789 astA 946261 astA Escherichia coli K12 arginine succinyltransferase NP_416261.1 1827755 R 83333 CDS NP_416262.1 16129702 946255 complement(1828786..1830006) 1 NC_000913.2 acetylornithine delta-aminotransferase; GO_process: amino acid catabolic process [goid 0009063]; succinylornithine transaminase, PLP-dependent 1830006 astC 946255 astC Escherichia coli K12 succinylornithine transaminase, PLP-dependent NP_416262.1 1828786 R 83333 CDS NP_416263.1 16129703 946254 1830452..1831258 1 NC_000913.2 GO_process: DNA catabolic process [goid 0006308]; GO_process: response to radiation [goid 0009314]; exonuclease III 1831258 xthA 946254 xthA Escherichia coli K12 exonuclease III NP_416263.1 1830452 D 83333 CDS NP_416264.4 90111321 946250 1831425..1832135 1 NC_000913.2 predicted inner membrane protein 1832135 ydjX 946250 ydjX Escherichia coli K12 predicted inner membrane protein NP_416264.4 1831425 D 83333 CDS NP_416265.4 90111322 946248 1832140..1832817 1 NC_000913.2 predicted protein 1832817 ydjY 946248 ydjY Escherichia coli K12 predicted protein NP_416265.4 1832140 D 83333 CDS NP_416266.1 16129706 946269 1832832..1833539 1 NC_000913.2 conserved inner membrane protein 1833539 ydjZ 946269 ydjZ Escherichia coli K12 conserved inner membrane protein NP_416266.1 1832832 D 83333 CDS NP_416267.1 16129707 946270 1833539..1834087 1 NC_000913.2 conserved protein 1834087 ynjA 946270 ynjA Escherichia coli K12 conserved protein NP_416267.1 1833539 D 83333 CDS NP_416268.2 90111323 946271 1834097..1835263 1 NC_000913.2 conserved protein 1835263 ynjB 946271 ynjB Escherichia coli K12 conserved protein NP_416268.2 1834097 D 83333 CDS NP_416269.4 145698277 946273 1835236..1836771 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused transporter subunits of ABC superfamily: membrane components 1836771 ynjC 946273 ynjC Escherichia coli K12 fused transporter subunits of ABC superfamily: membrane components NP_416269.4 1835236 D 83333 CDS NP_416270.1 16129710 944965 1836771..1837424 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 1837424 ynjD 944965 ynjD Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_416270.1 1836771 D 83333 CDS NP_416271.4 90111324 946505 1837491..1838798 1 NC_000913.2 putative thiosulfate sulfur transferase; GO_process: sulfur metabolic process [goid 0006790]; predicted thiosulfate sulfur transferase 1838798 ynjE 946505 ynjE Escherichia coli K12 predicted thiosulfate sulfur transferase NP_416271.4 1837491 D 83333 CDS NP_416272.2 90111325 946221 complement(1838807..1839427) 1 NC_000913.2 putative cytochrome oxidase; predicted phosphatidyl transferase, inner membrane protein 1839427 ynjF 946221 ynjF Escherichia coli K12 predicted phosphatidyl transferase, inner membrane protein NP_416272.2 1838807 R 83333 CDS NP_416273.1 16129713 946277 1839514..1839921 1 NC_000913.2 5-hydroxy-CTP pyrophosphohydrolase; pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase 1839921 nudG 946277 nudG Escherichia coli K12 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase NP_416273.1 1839514 D 83333 CDS NP_416274.1 16129714 946279 complement(1839887..1840159) 1 NC_000913.2 predicted protein 1840159 ynjH 946279 ynjH Escherichia coli K12 predicted protein NP_416274.1 1839887 R 83333 CDS NP_416275.1 16129715 946802 1840395..1841738 1 NC_000913.2 NADP-specific glutamate dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: glutamate biosynthetic process [goid 0006537]; glutamate dehydrogenase, NADP-specific 1841738 gdhA 946802 gdhA Escherichia coli K12 glutamate dehydrogenase, NADP-specific NP_416275.1 1840395 D 83333 CDS NP_416276.4 90111326 946239 complement(1841855..1842895) 1 NC_000913.2 predicted inner membrane protein 1842895 ynjI 946239 ynjI Escherichia coli K12 predicted inner membrane protein NP_416276.4 1841855 R 83333 CDS NP_416277.1 16129717 946141 complement(1843023..1844984) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA topoisomerase III 1844984 topB 946141 topB Escherichia coli K12 DNA topoisomerase III NP_416277.1 1843023 R 83333 CDS NP_416278.1 16129718 946768 complement(1844989..1846032) 1 NC_000913.2 selenophosphate synthase, H(2)Se added to acrylyl-tRNA; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; selenophosphate synthase 1846032 selD 946768 selD Escherichia coli K12 selenophosphate synthase NP_416278.1 1844989 R 83333 CDS NP_416279.1 16129719 945964 complement(1846149..1846700) 1 NC_000913.2 predicted oxidoreductase 1846700 ydjA 945964 ydjA Escherichia coli K12 predicted oxidoreductase NP_416279.1 1846149 R 83333 CDS NP_416280.1 16129720 946281 1846861..1848717 1 NC_000913.2 protease IV, a signal peptide peptidase; protease IV (signal peptide peptidase) 1848717 sppA 946281 sppA Escherichia coli K12 protease IV (signal peptide peptidase) NP_416280.1 1846861 D 83333 CDS NP_416281.1 16129721 946278 1848884..1849900 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; cytoplasmic L-asparaginase I 1849900 ansA 946278 ansA Escherichia coli K12 cytoplasmic L-asparaginase I NP_416281.1 1848884 D 83333 CDS NP_416282.4 90111327 946276 1849911..1850552 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: NAD biosynthetic process [goid 0009435]; nicotinamidase/pyrazinamidase 1850552 pncA 946276 pncA Escherichia coli K12 nicotinamidase/pyrazinamidase NP_416282.4 1849911 D 83333 CDS NP_416283.1 16129723 946274 complement(1850645..1852003) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1852003 ydjE 946274 ydjE Escherichia coli K12 predicted transporter NP_416283.1 1850645 R 83333 CDS NP_416284.1 16129724 946272 complement(1852120..1852878) 1 NC_000913.2 putative DEOR-type transcriptional regulator; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1852878 ydjF 946272 ydjF Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416284.1 1852120 R 83333 CDS NP_416285.1 16129725 946283 complement(1853015..1853995) 1 NC_000913.2 predicted oxidoreductase 1853995 ydjG 946283 ydjG Escherichia coli K12 predicted oxidoreductase NP_416285.1 1853015 R 83333 CDS NP_416286.4 90111328 946285 complement(1854005..1854952) 1 NC_000913.2 putative kinase; predicted kinase 1854952 ydjH 946285 ydjH Escherichia coli K12 predicted kinase NP_416286.4 1854005 R 83333 CDS NP_416287.1 16129727 946291 complement(1854957..1855793) 1 NC_000913.2 putative aldolase; predicted aldolase 1855793 ydjI 946291 ydjI Escherichia coli K12 predicted aldolase NP_416287.1 1854957 R 83333 CDS NP_416288.1 16129728 946292 complement(1855814..1856857) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1856857 ydjJ 946292 ydjJ Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_416288.1 1855814 R 83333 CDS NP_416289.1 16129729 946293 complement(1856874..1858253) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1858253 ydjK 946293 ydjK Escherichia coli K12 predicted transporter NP_416289.1 1856874 R 83333 CDS NP_416290.1 16129730 946299 complement(1858280..1859356) 1 NC_000913.2 predicted oxidoreductase, Zn-dependent and NAD(P)-binding 1859356 ydjL 946299 ydjL Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_416290.1 1858280 R 83333 CDS NP_416291.4 90111329 947074 complement(1859726..1859998) 1 NC_000913.2 conserved protein 1859998 yeaC 947074 yeaC Escherichia coli K12 conserved protein NP_416291.4 1859726 R 83333 CDS NP_416292.1 16129732 947188 complement(1860040..1860453) 1 NC_000913.2 methionine sulfoxide reductase B 1860453 msrB 947188 msrB Escherichia coli K12 methionine sulfoxide reductase B NP_416292.1 1860040 R 83333 CDS NP_416293.1 16129733 947679 1860795..1861790 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: gluconeogenesis [goid 0006094]; glyceraldehyde-3-phosphate dehydrogenase A 1861790 gapA 947679 gapA Escherichia coli K12 glyceraldehyde-3-phosphate dehydrogenase A NP_416293.1 1860795 D 83333 CDS NP_416294.4 90111330 946572 1861874..1862758 1 NC_000913.2 conserved protein 1862758 yeaD 946572 yeaD Escherichia coli K12 conserved protein NP_416294.4 1861874 D 83333 CDS NP_416295.1 16129735 946302 complement(1862806..1863660) 1 NC_000913.2 putative an aldehyde reductase; predicted oxidoreductase 1863660 yeaE 946302 yeaE Escherichia coli K12 predicted oxidoreductase NP_416295.1 1862806 R 83333 CDS NP_416296.1 16129736 946301 complement(1863750..1864496) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; scaffolding protein for murein synthesizing machinery 1864496 mipA 946301 mipA Escherichia coli K12 scaffolding protein for murein synthesizing machinery NP_416296.1 1863750 R 83333 CDS NP_416297.1 16129737 946297 1864932..1866866 1 NC_000913.2 conserved protein with nucleoside triphosphate hydrolase domain 1866866 yeaG 946297 yeaG Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_416297.1 1864932 D 83333 CDS NP_416298.1 16129738 946296 1866979..1868262 1 NC_000913.2 conserved protein 1868262 yeaH 946296 yeaH Escherichia coli K12 conserved protein NP_416298.1 1866979 D 83333 CDS NP_416299.1 16129739 946366 1868409..1869884 1 NC_000913.2 predicted diguanylate cyclase 1869884 yeaI 946366 yeaI Escherichia coli K12 predicted diguanylate cyclase NP_416299.1 1868409 D 83333 CDS NP_416300.2 90111331 946290 1870065..1871555 1 NC_000913.2 predicted diguanylate cyclase 1871555 yeaJ 946290 yeaJ Escherichia coli K12 predicted diguanylate cyclase NP_416300.2 1870065 D 83333 CDS NP_416301.1 16129741 946303 1871598..1872101 1 NC_000913.2 conserved protein 1872101 yeaK 946303 yeaK Escherichia coli K12 conserved protein NP_416301.1 1871598 D 83333 CDS NP_416302.2 90111332 946294 complement(1872102..1872206) 1 NC_000913.2 predicted protein 1872206 yoaI 946294 yoaI Escherichia coli K12 predicted protein NP_416302.2 1872102 R 83333 CDS NP_416303.1 16129743 946307 1872376..1872822 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1872822 yeaL 946307 yeaL Escherichia coli K12 conserved inner membrane protein NP_416303.1 1872376 D 83333 CDS NP_416304.1 16129744 946590 complement(1872779..1873600) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1873600 yeaM 946590 yeaM Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416304.1 1872779 R 83333 CDS NP_416305.1 16129745 946309 1873697..1874878 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amide transport [goid 0042886]; predicted transporter 1874878 yeaN 946309 yeaN Escherichia coli K12 predicted transporter NP_416305.1 1873697 D 83333 CDS NP_416306.2 90111333 945675 1874933..1875280 1 NC_000913.2 conserved protein 1875280 yeaO 945675 yeaO Escherichia coli K12 conserved protein NP_416306.2 1874933 D 83333 CDS NP_416307.1 16129747 946310 complement(1875302..1875556) 1 NC_000913.2 conserved outer membrane protein 1875556 yoaF 946310 yoaF Escherichia coli K12 conserved outer membrane protein NP_416307.1 1875302 R 83333 CDS NP_416308.4 90111334 948969 1875739..1876764 1 NC_000913.2 predicted diguanylate cyclase 1876764 yeaP 948969 yeaP Escherichia coli K12 predicted diguanylate cyclase NP_416308.4 1875739 D 83333 CDS NP_416309.1 16129749 946311 complement(1877031..1877279) 1 NC_000913.2 conserved inner membrane protein 1877279 yeaQ 946311 yeaQ Escherichia coli K12 conserved inner membrane protein NP_416309.1 1877031 R 83333 CDS NP_416310.1 16129750 946314 complement(1877427..1877609) 1 NC_000913.2 predicted protein 1877609 yoaG 946314 yoaG Escherichia coli K12 predicted protein NP_416310.1 1877427 R 83333 CDS NP_416311.1 16129751 946317 complement(1877613..1877972) 1 NC_000913.2 GO_process: xenobiotic metabolic process [goid 0006805]; conserved protein 1877972 yeaR 946317 yeaR Escherichia coli K12 conserved protein NP_416311.1 1877613 R 83333 CDS NP_416312.1 16129752 946157 complement(1878145..1878783) 1 NC_000913.2 neutral amino-acid efflux system 1878783 leuE 946157 leuE Escherichia coli K12 neutral amino-acid efflux system NP_416312.1 1878145 R 83333 CDS NP_416313.4 90111335 946316 complement(1878910..1879833) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1879833 yeaT 946316 yeaT Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416313.4 1878910 R 83333 CDS NP_416314.1 16129754 946319 1879936..1881021 1 NC_000913.2 putative tartrate dehydrogenase; GO_process: fermentation [goid 0006113]; predicted dehydrogenase 1881021 yeaU 946319 yeaU Escherichia coli K12 predicted dehydrogenase NP_416314.1 1879936 D 83333 CDS NP_416315.1 16129755 947326 1881212..1882657 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1882657 yeaV 947326 yeaV Escherichia coli K12 predicted transporter NP_416315.1 1881212 D 83333 CDS NP_416316.1 16129756 946325 1882689..1883813 1 NC_000913.2 predicted 2Fe-2S cluster-containing protein 1883813 yeaW 946325 yeaW Escherichia coli K12 predicted 2Fe-2S cluster-containing protein NP_416316.1 1882689 D 83333 CDS NP_416317.1 16129757 946329 1883869..1884834 1 NC_000913.2 putative diogenase beta subunit; predicted oxidoreductase 1884834 yeaX 946329 yeaX Escherichia coli K12 predicted oxidoreductase NP_416317.1 1883869 D 83333 CDS NP_416318.1 16129758 946328 complement(1884888..1886015) 1 NC_000913.2 RNase D, processes tRNA precursor; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; GO_process: RNA modification [goid 0009451]; ribonuclease D 1886015 rnd 946328 rnd Escherichia coli K12 ribonuclease D NP_416318.1 1884888 R 83333 CDS NP_416319.1 16129759 946327 complement(1886085..1887770) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: phospholipid biosynthetic process [goid 0008654]; acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) 1887770 fadD 946327 fadD Escherichia coli K12 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) NP_416319.1 1886085 R 83333 CDS NP_416320.1 16129760 946312 complement(1887975..1888556) 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lipoprotein 1888556 yeaY 946312 yeaY Escherichia coli K12 predicted lipoprotein NP_416320.1 1887975 R 83333 CDS NP_416321.1 16129761 946304 complement(1888596..1889291) 1 NC_000913.2 predicted peptidase 1889291 yeaZ 946304 yeaZ Escherichia coli K12 predicted peptidase NP_416321.1 1888596 R 83333 CDS NP_416322.1 16129762 946305 complement(1889349..1891259) 1 NC_000913.2 putative enzyme; GO_component: cytoplasm [goid 0005737]; conserved protein with nucleoside triphosphate hydrolase domain 1891259 yoaA 946305 yoaA Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_416322.1 1889349 R 83333 CDS NP_416323.4 90111336 946357 1891391..1891735 1 NC_000913.2 conserved protein 1891735 yoaB 946357 yoaB Escherichia coli K12 conserved protein NP_416323.4 1891391 D 83333 CDS NP_416324.1 16129764 946308 1892097..1892456 1 NC_000913.2 predicted protein 1892456 yoaC 946308 yoaC Escherichia coli K12 predicted protein NP_416324.1 1892097 D 83333 CDS NP_416325.1 16129765 946346 complement(1892576..1892755) 1 NC_000913.2 conserved protein 1892755 yoaH 946346 yoaH Escherichia coli K12 conserved protein NP_416325.1 1892576 R 83333 CDS NP_416326.1 16129766 946337 1892829..1894190 1 NC_000913.2 p-aminobenzoate synthetase, component I; GO_process: folic acid biosynthetic process [goid 0046656]; aminodeoxychorismate synthase, subunit I 1894190 pabB 946337 pabB Escherichia coli K12 aminodeoxychorismate synthase, subunit I NP_416326.1 1892829 D 83333 CDS NP_416327.1 16129767 946330 1894194..1894772 1 NC_000913.2 predicted NUDIX hydrolase 1894772 nudL 946330 nudL Escherichia coli K12 predicted NUDIX hydrolase NP_416327.1 1894194 D 83333 CDS NP_416328.1 16129768 946331 1894956..1896320 1 NC_000913.2 L-serine deaminase; GO_process: amino acid catabolic process [goid 0009063]; L-serine deaminase I 1896320 sdaA 946331 sdaA Escherichia coli K12 L-serine deaminase I NP_416328.1 1894956 D 83333 CDS NP_416329.4 90111337 946336 1896451..1898049 1 NC_000913.2 predicted phosphodiesterase 1898049 yoaD 946336 yoaD Escherichia coli K12 predicted phosphodiesterase NP_416329.4 1896451 D 83333 CDS NP_416330.1 16129770 946335 complement(1898053..1899609) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; fused predicted membrane protein/conserved protein 1899609 yoaE 946335 yoaE Escherichia coli K12 fused predicted membrane protein/conserved protein NP_416330.1 1898053 R 83333 CDS NP_416331.1 16129771 946334 1900072..1901043 1 NC_000913.2 PTS enzyme IIAB, mannose-specific; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused mannose-specific PTS enzymes: IIA component/IIB component 1901043 manX 946334 manX Escherichia coli K12 fused mannose-specific PTS enzymes: IIA component/IIB component NP_416331.1 1900072 D 83333 CDS NP_416332.1 16129772 946332 1901106..1901906 1 NC_000913.2 PTS enzyme IIC, mannose-specific; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; mannose-specific enzyme IIC component of PTS 1901906 manY 946332 manY Escherichia coli K12 mannose-specific enzyme IIC component of PTS NP_416332.1 1901106 D 83333 CDS NP_416333.3 49176154 946342 1901910..1902770 1 NC_000913.2 PTS enzyme IID, mannose-specific; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; mannose-specific enzyme IID component of PTS 1902770 manZ 946342 manZ Escherichia coli K12 mannose-specific enzyme IID component of PTS NP_416333.3 1901910 D 83333 CDS NP_416334.1 16129774 946343 1902825..1903283 1 NC_000913.2 conserved inner membrane protein 1903283 yobD 946343 yobD Escherichia coli K12 conserved inner membrane protein NP_416334.1 1902825 D 83333 CDS NP_416335.4 162135903 946341 1903712..1904278 1 NC_000913.2 conserved inner membrane protein 1904278 yebN 946341 yebN Escherichia coli K12 conserved inner membrane protein NP_416335.4 1903712 D 83333 CDS NP_416336.1 16129776 946340 complement(1904275..1905084) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 23S rRNA m1G745 methyltransferase 1905084 rrmA 946340 rrmA Escherichia coli K12 23S rRNA m1G745 methyltransferase NP_416336.1 1904275 R 83333 CDS NP_416337.1 16129777 946339 complement(1905250..1905459) 1 NC_000913.2 cold shock protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; stress protein, member of the CspA-family 1905459 cspC 946339 cspC Escherichia coli K12 stress protein, member of the CspA-family NP_416337.1 1905250 R 83333 CDS NP_416338.1 16129778 946338 complement(1905472..1905615) 1 NC_000913.2 predicted protein 1905615 yobF 946338 yobF Escherichia coli K12 predicted protein NP_416338.1 1905472 R 83333 CDS NP_416339.1 16129779 946350 complement(1906285..1906572) 1 NC_000913.2 predicted protein 1906572 yebO 946350 yebO Escherichia coli K12 predicted protein NP_416339.1 1906285 R 83333 CDS NP_416340.1 16129780 946351 complement(1906647..1906790) 1 NC_000913.2 predicted protein 1906790 mgrB 946351 mgrB Escherichia coli K12 predicted protein NP_416340.1 1906647 R 83333 CDS YP_588456.1 94541114 1450271 1906949..1907188 1 NC_000913.2 predicted protein 1907188 yobH 1450271 yobH Escherichia coli K12 predicted protein YP_588456.1 1906949 D 83333 CDS NP_416341.1 16129781 946129 complement(1907332..1908123) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 1908123 kdgR 946129 kdgR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416341.1 1907332 R 83333 CDS NP_416342.4 90111339 946048 1908300..1909673 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 1909673 yebQ 946048 yebQ Escherichia coli K12 predicted transporter NP_416342.4 1908300 D 83333 CDS NP_416343.1 16129783 946076 complement(1909719..1910600) 1 NC_000913.2 heat shock protein, integral membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to temperature stimulus [goid 0009266]; predicted endopeptidase 1910600 htpX 946076 htpX Escherichia coli K12 predicted endopeptidase NP_416343.1 1909719 R 83333 CDS NP_416344.1 16129784 946096 complement(1910792..1912840) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: protein folding [goid 0006457]; GO_process: response to drug [goid 0042493]; carboxy-terminal protease for penicillin-binding protein 3 1912840 prc 946096 prc Escherichia coli K12 carboxy-terminal protease for penicillin-binding protein 3 NP_416344.1 1910792 R 83333 CDS YP_026161.1 49176156 948950 complement(1912860..1913558) 1 NC_000913.2 regulator of ProP putative structural element which influences activation of ProP; GO_process: response to osmotic stress [goid 0006970]; predicted structural transport element 1913558 proQ 948950 proQ Escherichia coli K12 predicted structural transport element YP_026161.1 1912860 R 83333 CDS NP_416346.3 49176157 946086 complement(1913655..1914206) 1 NC_000913.2 conserved protein 1914206 yebR 946086 yebR Escherichia coli K12 conserved protein NP_416346.3 1913655 R 83333 CDS NP_416347.1 16129786 946353 1914282..1915565 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 1915565 yebS 946353 yebS Escherichia coli K12 conserved inner membrane protein NP_416347.1 1914282 D 83333 CDS NP_416348.2 90111340 946352 1915534..1918167 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved protein 1918167 yebT 946352 yebT Escherichia coli K12 conserved protein NP_416348.2 1915534 D 83333 CDS NP_416349.2 90111341 946348 1918247..1919686 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; predicted methyltransferase 1919686 rsmF 946348 rsmF Escherichia coli K12 predicted methyltransferase NP_416349.2 1918247 D 83333 CDS NP_416350.4 90111342 946347 1919804..1920040 1 NC_000913.2 predicted protein 1920040 yebV 946347 yebV Escherichia coli K12 predicted protein NP_416350.4 1919804 D 83333 CDS NP_416351.2 90111343 946354 1920145..1920336 1 NC_000913.2 predicted protein 1920336 yebW 946354 yebW Escherichia coli K12 predicted protein NP_416351.2 1920145 D 83333 CDS NP_416352.4 90111344 946356 complement(1920337..1920993) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; GO_process: response to temperature stimulus [goid 0009266]; serine/threonine-specific protein phosphatase 1 1920993 pphA 946356 pphA Escherichia coli K12 serine/threonine-specific protein phosphatase 1 NP_416352.4 1920337 R 83333 CDS NP_416353.1 16129792 947014 complement(1921389..1921730) 1 NC_000913.2 predicted protein 1921730 yebY 947014 yebY Escherichia coli K12 predicted protein NP_416353.1 1921389 R 83333 CDS NP_416354.1 16129793 947078 complement(1921743..1922615) 1 NC_000913.2 putative resistance protein; GO_process: response to drug [goid 0042493]; predicted inner membrane protein 1922615 yebZ 947078 yebZ Escherichia coli K12 predicted inner membrane protein NP_416354.1 1921743 R 83333 CDS NP_416355.1 16129794 948315 complement(1922619..1922993) 1 NC_000913.2 conserved protein 1922993 yobA 948315 yobA Escherichia coli K12 conserved protein NP_416355.1 1922619 R 83333 CDS NP_416356.1 16129795 947471 1923132..1923362 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, theta subunit 1923362 holE 947471 holE Escherichia coli K12 DNA polymerase III, theta subunit NP_416356.1 1923132 D 83333 CDS NP_416357.1 16129796 948329 1923464..1924120 1 NC_000913.2 conserved protein 1924120 yobB 948329 yobB Escherichia coli K12 conserved protein NP_416357.1 1923464 D 83333 CDS NP_416358.1 16129797 946361 1924144..1924806 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; DNA exonuclease X 1924806 exoX 946361 exoX Escherichia coli K12 DNA exonuclease X NP_416358.1 1924144 D 83333 CDS NP_416359.1 16129798 946358 complement(1924803..1926863) 1 NC_000913.2 protease II 1926863 ptrB 946358 ptrB Escherichia coli K12 protease II NP_416359.1 1924803 R 83333 CDS NP_416360.1 16129799 946355 complement(1927072..1927731) 1 NC_000913.2 conserved protein 1927731 yebE 946355 yebE Escherichia coli K12 conserved protein NP_416360.1 1927072 R 83333 CDS NP_416361.2 145698278 946363 complement(1928058..1928414) 1 NC_000913.2 predicted protein 1928414 yebF 946363 yebF Escherichia coli K12 predicted protein NP_416361.2 1928058 R 83333 CDS NP_416362.1 16129801 946364 complement(1928481..1928771) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; conserved protein regulated by LexA 1928771 yebG 946364 yebG Escherichia coli K12 conserved protein regulated by LexA NP_416362.1 1928481 R 83333 CDS NP_416363.1 16129802 946368 1928905..1930083 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylglycinamide formyltransferase 2 1930083 purT 946368 purT Escherichia coli K12 phosphoribosylglycinamide formyltransferase 2 NP_416363.1 1928905 D 83333 CDS NP_416364.1 16129803 946367 complement(1930139..1930780) 1 NC_000913.2 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: Entner-Doudoroff pathway [goid 0009255]; GO_process: glyoxylate catabolic process [goid 0009436]; multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase 1930780 eda 946367 eda Escherichia coli K12 multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase NP_416364.1 1930139 R 83333 CDS NP_416365.1 16129804 946362 complement(1930817..1932628) 1 NC_000913.2 GO_process: Entner-Doudoroff pathway [goid 0009255]; 6-phosphogluconate dehydratase 1932628 edd 946362 edd Escherichia coli K12 6-phosphogluconate dehydratase NP_416365.1 1930817 R 83333 CDS NP_416366.1 16129805 946370 complement(1932863..1934338) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, oxidative branch [goid 0009051]; glucose-6-phosphate dehydrogenase 1934338 zwf 946370 zwf Escherichia coli K12 glucose-6-phosphate dehydrogenase NP_416366.1 1932863 R 83333 CDS NP_416367.1 16129806 946373 1934676..1935545 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 1935545 yebK 946373 yebK Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416367.1 1934676 D 83333 CDS NP_416368.1 16129807 946527 1935673..1937115 1 NC_000913.2 pyruvate kinase II, glucose stimulated; GO_process: glycolysis [goid 0006096]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; pyruvate kinase II 1937115 pykA 946527 pykA Escherichia coli K12 pyruvate kinase II NP_416368.1 1935673 D 83333 CDS NP_416369.1 16129808 945143 complement(1937246..1938217) 1 NC_000913.2 suppressor of htrB, heat shock protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; myristoyl-acyl carrier protein (ACP)-dependent acyltransferase 1938217 lpxM 945143 lpxM Escherichia coli K12 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase NP_416369.1 1937246 R 83333 CDS NP_416370.2 90111345 946376 complement(1938337..1939659) 1 NC_000913.2 predicted peptidase 1939659 yebA 946376 yebA Escherichia coli K12 predicted peptidase NP_416370.2 1938337 R 83333 CDS NP_416371.4 90111346 946375 complement(1939675..1940607) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; zinc transporter subunit: periplasmic-binding component of ABC superfamily 1940607 znuA 946375 znuA Escherichia coli K12 zinc transporter subunit: periplasmic-binding component of ABC superfamily NP_416371.4 1939675 R 83333 CDS NP_416372.1 16129811 946374 1940686..1941441 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; zinc transporter subunit: ATP-binding component of ABC superfamily 1941441 znuC 946374 znuC Escherichia coli K12 zinc transporter subunit: ATP-binding component of ABC superfamily NP_416372.1 1940686 D 83333 CDS NP_416373.1 16129812 946372 1941438..1942223 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; zinc transporter subunit: membrane component of ABC superfamily 1942223 znuB 946372 znuB Escherichia coli K12 zinc transporter subunit: membrane component of ABC superfamily NP_416373.1 1941438 D 83333 CDS NP_416374.1 16129813 946371 complement(1942370..1943380) 1 NC_000913.2 Holliday junction helicase subunit A; branch migration; repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; GO_process: SOS response [goid 0009432]; ATP-dependent DNA helicase, component of RuvABC resolvasome 1943380 ruvB 946371 ruvB Escherichia coli K12 ATP-dependent DNA helicase, component of RuvABC resolvasome NP_416374.1 1942370 R 83333 CDS NP_416375.1 16129814 946369 complement(1943389..1944000) 1 NC_000913.2 Holliday junction helicase subunit B; branch migration; repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; GO_process: SOS response [goid 0009432]; component of RuvABC resolvasome, regulatory subunit 1944000 ruvA 946369 ruvA Escherichia coli K12 component of RuvABC resolvasome, regulatory subunit NP_416375.1 1943389 R 83333 CDS NP_416376.2 90111347 946377 1944275..1944877 1 NC_000913.2 predicted protein 1944877 yebB 946377 yebB Escherichia coli K12 predicted protein NP_416376.2 1944275 D 83333 CDS NP_416377.1 16129816 946378 complement(1944879..1945400) 1 NC_000913.2 Holliday junction nuclease; resolution of structures; repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; component of RuvABC resolvasome, endonuclease 1945400 ruvC 946378 ruvC Escherichia coli K12 component of RuvABC resolvasome, endonuclease NP_416377.1 1944879 R 83333 CDS NP_416378.1 16129817 946379 complement(1945435..1946175) 1 NC_000913.2 conserved protein 1946175 yebC 946379 yebC Escherichia coli K12 conserved protein NP_416378.1 1945435 R 83333 CDS NP_416379.1 16129818 946383 complement(1946204..1946656) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; dATP pyrophosphohydrolase 1946656 nudB 946383 nudB Escherichia coli K12 dATP pyrophosphohydrolase NP_416379.1 1946204 R 83333 CDS NP_416380.1 16129819 946385 complement(1946774..1948546) 1 NC_000913.2 aspartate tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; aspartyl-tRNA synthetase 1948546 aspS 946385 aspS Escherichia coli K12 aspartyl-tRNA synthetase NP_416380.1 1946774 R 83333 CDS NP_416381.2 90111348 946384 1948856..1949422 1 NC_000913.2 predicted hydrolase 1949422 yecD 946384 yecD Escherichia coli K12 predicted hydrolase NP_416381.2 1948856 D 83333 CDS NP_416382.1 16129821 946382 1949419..1950237 1 NC_000913.2 conserved protein 1950237 yecE 946382 yecE Escherichia coli K12 conserved protein NP_416382.1 1949419 D 83333 CDS NP_416383.4 90111349 946381 1950290..1950685 1 NC_000913.2 predicted inner membrane protein 1950685 yecN 946381 yecN Escherichia coli K12 predicted inner membrane protein NP_416383.4 1950290 D 83333 CDS NP_416384.1 16129823 946380 1950726..1951469 1 NC_000913.2 predicted methyltransferase 1951469 cmoA 946380 cmoA Escherichia coli K12 predicted methyltransferase NP_416384.1 1950726 D 83333 CDS NP_416385.1 16129824 946387 1951466..1952437 1 NC_000913.2 putative enzyme; predicted S-adenosyl-L-methionine-dependent methyltransferase 1952437 cmoB 946387 cmoB Escherichia coli K12 predicted S-adenosyl-L-methionine-dependent methyltransferase NP_416385.1 1951466 D 83333 CDS NP_416386.4 90111350 946389 complement(1952602..1955031) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; trimethylamine N-oxide reductase system III, catalytic subunit 1955031 torZ 946389 torZ Escherichia coli K12 trimethylamine N-oxide reductase system III, catalytic subunit NP_416386.4 1952602 R 83333 CDS NP_416387.1 16129826 946490 complement(1955056..1956156) 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; TMAO reductase III (TorYZ), cytochrome c-type subunit 1956156 torY 946490 torY Escherichia coli K12 TMAO reductase III (TorYZ), cytochrome c-type subunit NP_416387.1 1955056 R 83333 CDS YP_025309.2 90111351 2847756 complement(1956544..1957290) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; copper homeostasis protein 1957290 cutC 2847756 cutC Escherichia coli K12 copper homeostasis protein YP_025309.2 1956544 R 83333 CDS NP_416389.4 90111352 946415 complement(1957304..1957870) 1 NC_000913.2 predicted metal-binding enzyme 1957870 yecM 946415 yecM Escherichia coli K12 predicted metal-binding enzyme NP_416389.4 1957304 R 83333 CDS NP_416390.1 16129828 946452 1958086..1959819 1 NC_000913.2 arginine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; arginyl-tRNA synthetase 1959819 argS 946452 argS Escherichia coli K12 arginyl-tRNA synthetase NP_416390.1 1958086 D 83333 CDS NP_416391.4 90111353 946511 1959996..1960484 1 NC_000913.2 predicted protein 1960484 yecT 946511 yecT Escherichia coli K12 predicted protein NP_416391.4 1959996 D 83333 CDS NP_416392.1 16129830 946094 complement(1960604..1960996) 1 NC_000913.2 flagellar protein; conserved protein 1960996 flhE 946094 flhE Escherichia coli K12 conserved protein NP_416392.1 1960604 R 83333 CDS NP_416393.1 16129831 946390 complement(1960996..1963074) 1 NC_000913.2 flagellar biosynthesis; possible export of flagellar proteins; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; predicted flagellar export pore protein 1963074 flhA 946390 flhA Escherichia coli K12 predicted flagellar export pore protein NP_416393.1 1960996 R 83333 CDS NP_416394.1 16129832 946391 complement(1963067..1964215) 1 NC_000913.2 putative part of export apparatus for flagellar proteins; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted flagellar export pore protein 1964215 flhB 946391 flhB Escherichia coli K12 predicted flagellar export pore protein NP_416394.1 1963067 R 83333 CDS NP_416395.1 16129833 946392 complement(1964417..1965061) 1 NC_000913.2 chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; chemotaxis regulator, protein phosphatase for CheY 1965061 cheZ 946392 cheZ Escherichia coli K12 chemotaxis regulator, protein phosphatase for CheY NP_416395.1 1964417 R 83333 CDS NP_416396.1 16129834 946393 complement(1965072..1965461) 1 NC_000913.2 chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components; GO_component: cytoplasm [goid 0005737]; GO_process: taxis [goid 0042330]; chemotaxis regulator transmitting signal to flagellar motor component 1965461 cheY 946393 cheY Escherichia coli K12 chemotaxis regulator transmitting signal to flagellar motor component NP_416396.1 1965072 R 83333 CDS NP_416397.1 16129835 946394 complement(1965476..1966525) 1 NC_000913.2 response regulator for chemotaxis (cheA sensor); protein methylesterase; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA 1966525 cheB 946394 cheB Escherichia coli K12 fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA NP_416397.1 1965476 R 83333 CDS NP_416398.1 16129836 946396 complement(1966528..1967388) 1 NC_000913.2 response regulator for chemotaxis; protein glutamate methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; chemotaxis regulator, protein-glutamate methyltransferase 1967388 cheR 946396 cheR Escherichia coli K12 chemotaxis regulator, protein-glutamate methyltransferase NP_416398.1 1966528 R 83333 CDS NP_416399.1 16129837 946397 complement(1967407..1969008) 1 NC_000913.2 methyl-accepting chemotaxis protein IV, peptide sensor receptor; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting protein IV 1969008 tap 946397 tap Escherichia coli K12 methyl-accepting protein IV NP_416399.1 1967407 R 83333 CDS NP_416400.1 16129838 946399 complement(1969054..1970715) 1 NC_000913.2 methyl-accepting chemotaxis protein II, aspartate sensor receptor; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting chemotaxis protein II 1970715 tar 946399 tar Escherichia coli K12 methyl-accepting chemotaxis protein II NP_416400.1 1969054 R 83333 CDS NP_416401.1 16129839 946400 complement(1970860..1971363) 1 NC_000913.2 positive regulator of CheA protein activity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; purine-binding chemotaxis protein 1971363 cheW 946400 cheW Escherichia coli K12 purine-binding chemotaxis protein NP_416401.1 1970860 R 83333 CDS NP_416402.1 16129840 946401 complement(1971384..1973348) 1 NC_000913.2 sensory transducer kinase between chemo- signal receptors and CheB and CheY; GO_process: protein modification [goid 0006464]; GO_process: taxis [goid 0042330]; fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein 1973348 cheA 946401 cheA Escherichia coli K12 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein NP_416402.1 1971384 R 83333 CDS NP_416403.1 16129841 946402 complement(1973353..1974279) 1 NC_000913.2 enables flagellar motor rotation, linking torque machinery to cell wall; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; protein that enables flagellar motor rotation 1974279 motB 946402 motB Escherichia coli K12 protein that enables flagellar motor rotation NP_416403.1 1973353 R 83333 CDS NP_416404.1 16129842 947564 complement(1974276..1975163) 1 NC_000913.2 proton conductor component of motor; no effect on switching; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; proton conductor component of flagella motor 1975163 motA 947564 motA Escherichia coli K12 proton conductor component of flagella motor NP_416404.1 1974276 R 83333 CDS NP_416405.1 16129843 947280 complement(1975290..1975868) 1 NC_000913.2 regulator of flagellar biosynthesis acting on class 2 operons; transcription initiation factor?; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; DNA-binding transcriptional dual regulator with FlhD 1975868 flhC 947280 flhC Escherichia coli K12 DNA-binding transcriptional dual regulator with FlhD NP_416405.1 1975290 R 83333 CDS NP_416406.4 145698279 945442 complement(1975871..1976221) 1 NC_000913.2 regulator of flagellar biosynthesis, acting on class 2 operons; transcriptional initiation factor?; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; DNA-binding transcriptional dual regulator with FlhC 1976221 flhD 945442 flhD Escherichia coli K12 DNA-binding transcriptional dual regulator with FlhC NP_416406.4 1975871 R 83333 CDS NP_416407.1 16129845 945867 complement(1976542..1977045) 1 NC_000913.2 IS1 transposase InsAB' 1977045 insB 945867 insB Escherichia coli K12 IS1 transposase InsAB' NP_416407.1 1976542 R 83333 CDS NP_416408.1 16129846 945800 complement(1976964..1977239) 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 1977239 insA 945800 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA NP_416408.1 1976964 R 83333 CDS NP_416409.1 16129847 946404 1977777..1978205 1 NC_000913.2 putative regulator; universal stress protein 1978205 uspC 946404 uspC Escherichia coli K12 universal stress protein NP_416409.1 1977777 D 83333 CDS NP_416410.1 16129848 946405 complement(1978212..1979636) 1 NC_000913.2 GO_process: glucose metabolic process [goid 0006006]; GO_process: response to osmotic stress [goid 0006970]; trehalose-6-phosphate synthase 1979636 otsA 946405 otsA Escherichia coli K12 trehalose-6-phosphate synthase NP_416410.1 1978212 R 83333 CDS NP_416411.1 16129849 946406 complement(1979611..1980411) 1 NC_000913.2 trehalose-6-phosphate phophatase, biosynthetic; GO_component: cytoplasm [goid 0005737]; GO_process: glucose metabolic process [goid 0006006]; GO_process: response to osmotic stress [goid 0006970]; trehalose-6-phosphate phosphatase, biosynthetic 1980411 otsB 946406 otsB Escherichia coli K12 trehalose-6-phosphate phosphatase, biosynthetic NP_416411.1 1979611 R 83333 CDS YP_026162.2 145698280 948923 complement(1980578..1981564) 1 NC_000913.2 high-affinity L-arabinose transport protein (ABC superfamily, membrane); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused L-arabinose transporter subunits of ABC superfamily: membrane components 1981564 araH 948923 araH Escherichia coli K12 fused L-arabinose transporter subunits of ABC superfamily: membrane components YP_026162.2 1980578 R 83333 CDS NP_416413.1 16129850 946408 complement(1981579..1983093) 1 NC_000913.2 ATP-binding component of high-affinity L-arabinose transport system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components 1983093 araG 946408 araG Escherichia coli K12 fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components NP_416413.1 1981579 R 83333 CDS NP_416414.1 16129851 946409 complement(1983163..1984152) 1 NC_000913.2 L-arabinose-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; L-arabinose transporter subunit 1984152 araF 946409 araF Escherichia coli K12 L-arabinose transporter subunit NP_416414.1 1983163 R 83333 CDS NP_416415.1 16129852 946407 1984949..1985452 1 NC_000913.2 ferritin-like protein; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; predicted ferritin-like protein 1985452 ftnB 946407 ftnB Escherichia coli K12 predicted ferritin-like protein NP_416415.1 1984949 D 83333 CDS NP_416416.2 94541093 946388 complement(1985531..1985782) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 1985782 yecJ 946388 yecJ Escherichia coli K12 predicted protein NP_416416.2 1985531 R 83333 CDS NP_416417.1 16129854 946386 1986246..1986569 1 NC_000913.2 predicted protein 1986569 yecR 946386 yecR Escherichia coli K12 predicted protein NP_416417.1 1986246 D 83333 CDS NP_416418.1 16129855 946410 1986740..1987237 1 NC_000913.2 cytoplasmic ferritin (an iron storage protein); GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; ferritin iron storage protein (cytoplasmic) 1987237 ftnA 946410 ftnA Escherichia coli K12 ferritin iron storage protein (cytoplasmic) NP_416418.1 1986740 D 83333 CDS NP_416419.1 16129856 946411 complement(1987275..1987514) 1 NC_000913.2 predicted protein 1987514 yecH 946411 yecH Escherichia coli K12 predicted protein NP_416419.1 1987275 R 83333 CDS NP_416420.1 16129857 946412 1987705..1988916 1 NC_000913.2 tyrosine-specific transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: tyrosine biosynthetic process [goid 0006571]; tyrosine transporter 1988916 tyrP 946412 tyrP Escherichia coli K12 tyrosine transporter NP_416420.1 1987705 D 83333 CDS NP_416421.1 16129858 945061 complement(1988978..1989643) 1 NC_000913.2 conserved metal-binding protein 1989643 yecA 945061 yecA Escherichia coli K12 conserved metal-binding protein NP_416421.1 1988978 R 83333 CDS NP_416422.1 16129859 945791 complement(1990293..1990841) 1 NC_000913.2 phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylglycerophosphate synthetase 1990841 pgsA 945791 pgsA Escherichia coli K12 phosphatidylglycerophosphate synthetase NP_416422.1 1990293 R 83333 CDS NP_416423.4 90111354 947203 complement(1990898..1992730) 1 NC_000913.2 excinuclease ABC, subunit C; repair of UV damage to DNA; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; excinuclease UvrABC, endonuclease subunit 1992730 uvrC 947203 uvrC Escherichia coli K12 excinuclease UvrABC, endonuclease subunit NP_416423.4 1990898 R 83333 CDS NP_416424.1 16129861 946424 complement(1992727..1993383) 1 NC_000913.2 putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with BarA 1993383 uvrY 946424 uvrY Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with BarA NP_416424.1 1992727 R 83333 CDS NP_416425.1 16129862 946420 1993842..1994066 1 NC_000913.2 predicted protein 1994066 yecF 946420 yecF Escherichia coli K12 predicted protein NP_416425.1 1993842 D 83333 CDS NP_416426.1 16129863 946421 complement(1994134..1994856) 1 NC_000913.2 transcriptional regulator of ftsQAZ gene cluster; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 1994856 sdiA 946421 sdiA Escherichia coli K12 DNA-binding transcriptional activator NP_416426.1 1994134 R 83333 CDS NP_416427.1 16129864 946422 complement(1995086..1995838) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 1995838 yecC 946422 yecC Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_416427.1 1995086 R 83333 CDS NP_416428.1 16129865 949105 complement(1995835..1996503) 1 NC_000913.2 putative transport system permease protein (former yecC); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 1996503 yecS 949105 yecS Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_416428.1 1995835 R 83333 CDS NP_416429.4 90111355 946831 complement(1996518..1997504) 1 NC_000913.2 putative 1-aminocyclopropane-1-carboxylate deaminase; D-cysteine desulfhydrase, PLP-dependent 1997504 dcyD 946831 dcyD Escherichia coli K12 D-cysteine desulfhydrase, PLP-dependent NP_416429.4 1996518 R 83333 CDS NP_416430.1 16129867 948833 complement(1997609..1998409) 1 NC_000913.2 putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: cysteine biosynthetic process [goid 0019344]; GO_process: cysteine transport [goid 0042883]; cystine transporter subunit 1998409 fliY 948833 fliY Escherichia coli K12 cystine transporter subunit NP_416430.1 1997609 R 83333 CDS NP_416431.2 90111356 946833 complement(1998497..1999048) 1 NC_000913.2 predicted regulator of FliA activity 1999048 fliZ 946833 fliZ Escherichia coli K12 predicted regulator of FliA activity NP_416431.2 1998497 R 83333 CDS NP_416432.3 49176170 948824 complement(1999094..1999813) 1 NC_000913.2 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons; GO_component: flagellum [goid 0019861]; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: taxis [goid 0042330]; RNA polymerase, sigma 28 (sigma F) factor 1999813 fliA 948824 fliA Escherichia coli K12 RNA polymerase, sigma 28 (sigma F) factor NP_416432.3 1999094 R 83333 CDS NP_416433.1 16129870 949101 complement(2000134..2001630) 1 NC_000913.2 flagellar biosynthesis; flagellin, filament structural protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar filament structural protein (flagellin) 2001630 fliC 949101 fliC Escherichia coli K12 flagellar filament structural protein (flagellin) NP_416433.1 2000134 R 83333 CDS NP_416434.1 16129871 946428 2001896..2003302 1 NC_000913.2 flagellar biosynthesis; filament capping protein; enables filament assembly; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar filament capping protein 2003302 fliD 946428 fliD Escherichia coli K12 flagellar filament capping protein NP_416434.1 2001896 D 83333 CDS NP_416435.1 16129872 946429 2003327..2003737 1 NC_000913.2 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity); GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar protein potentiates polymerization 2003737 fliS 946429 fliS Escherichia coli K12 flagellar protein potentiates polymerization NP_416435.1 2003327 D 83333 CDS NP_416436.1 16129873 946433 2003737..2004102 1 NC_000913.2 flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity); GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: protein folding [goid 0006457]; GO_process: taxis [goid 0042330]; predicted chaperone 2004102 fliT 946433 fliT Escherichia coli K12 predicted chaperone NP_416436.1 2003737 D 83333 CDS NP_416437.1 16129874 946434 2004180..2005667 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; cytoplasmic alpha-amylase 2005667 amyA 946434 amyA Escherichia coli K12 cytoplasmic alpha-amylase NP_416437.1 2004180 D 83333 CDS NP_416438.1 16129875 949082 complement(2005701..2006114) 1 NC_000913.2 predicted protein 2006114 yedD 949082 yedD Escherichia coli K12 predicted protein NP_416438.1 2005701 R 83333 CDS NP_416439.1 16129876 945192 2006301..2007506 1 NC_000913.2 putative transport system permease protein; predicted inner membrane protein 2007506 yedE 945192 yedE Escherichia coli K12 predicted inner membrane protein NP_416439.1 2006301 D 83333 CDS NP_416440.1 16129877 946909 2007503..2007736 1 NC_000913.2 conserved protein 2007736 yedF 946909 yedF Escherichia coli K12 conserved protein NP_416440.1 2007503 D 83333 CDS YP_025310.1 49176171 946435 2007845..2008513 1 NC_000913.2 predicted protein 2008513 yedK 946435 yedK Escherichia coli K12 predicted protein YP_025310.1 2007845 D 83333 CDS NP_416442.1 16129879 946437 2008624..2009103 1 NC_000913.2 predicted acyltransferase 2009103 yedL 946437 yedL Escherichia coli K12 predicted acyltransferase NP_416442.1 2008624 D 83333 CDS b4495 2847704 complement(join(2009247..2009381,2009387..2010064,2010064..2010375)) 1 NC_000913.2 pseudogene, IpaH/YopM family; 2010375 yedN 2847704 yedN Escherichia coli K12 2009247 R 83333 CDS b1936 946445 2010526..2010687 1 NC_000913.2 predicted defective phage integrase (pseudogene); 2010687 intG 946445 intG Escherichia coli K12 2010526 D 83333 CDS NP_416447.1 16129884 946446 complement(2010724..2011038) 1 NC_000913.2 flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar basal-body component 2011038 fliE 946446 fliE Escherichia coli K12 flagellar basal-body component NP_416447.1 2010724 R 83333 CDS NP_416448.1 16129885 946448 2011253..2012911 1 NC_000913.2 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein; GO_component: flagellum [goid 0019861]; GO_component: organelle inner membrane [goid 0019866]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar basal-body MS-ring and collar protein 2012911 fliF 946448 fliF Escherichia coli K12 flagellar basal-body MS-ring and collar protein NP_416448.1 2011253 D 83333 CDS NP_416449.1 16129886 946451 2012904..2013899 1 NC_000913.2 flagellar biosynthesis, component of motor switching and energizing, enabling rotation and determining its direction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar motor switching and energizing component 2013899 fliG 946451 fliG Escherichia coli K12 flagellar motor switching and energizing component NP_416449.1 2012904 D 83333 CDS NP_416450.2 90111357 946456 2013892..2014578 1 NC_000913.2 flagellar biosynthesis; export of flagellar proteins?; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2014578 fliH 946456 fliH Escherichia coli K12 flagellar biosynthesis protein NP_416450.2 2013892 D 83333 CDS NP_416451.1 16129888 946457 2014578..2015951 1 NC_000913.2 GO_component: flagellum [goid 0019861]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; flagellum-specific ATP synthase 2015951 fliI 946457 fliI Escherichia coli K12 flagellum-specific ATP synthase NP_416451.1 2014578 D 83333 CDS NP_416452.1 16129889 946454 2015970..2016413 1 NC_000913.2 flagellar fliJ protein; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar protein 2016413 fliJ 946454 fliJ Escherichia coli K12 flagellar protein NP_416452.1 2015970 D 83333 CDS NP_416453.1 16129890 946449 2016410..2017537 1 NC_000913.2 GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar hook-length control protein 2017537 fliK 946449 fliK Escherichia coli K12 flagellar hook-length control protein NP_416453.1 2016410 D 83333 CDS NP_416454.1 16129891 946443 2017642..2018106 1 NC_000913.2 flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2018106 fliL 946443 fliL Escherichia coli K12 flagellar biosynthesis protein NP_416454.1 2017642 D 83333 CDS NP_416455.1 16129892 946442 2018111..2019115 1 NC_000913.2 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar motor switching and energizing component 2019115 fliM 946442 fliM Escherichia coli K12 flagellar motor switching and energizing component NP_416455.1 2018111 D 83333 CDS NP_416456.1 16129893 946423 2019112..2019525 1 NC_000913.2 flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar motor switching and energizing component 2019525 fliN 946423 fliN Escherichia coli K12 flagellar motor switching and energizing component NP_416456.1 2019112 D 83333 CDS NP_416457.4 90111358 946458 2019528..2019893 1 NC_000913.2 flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2019893 fliO 946458 fliO Escherichia coli K12 flagellar biosynthesis protein NP_416457.4 2019528 D 83333 CDS NP_416458.1 16129895 946462 2019893..2020630 1 NC_000913.2 flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: flagellum biogenesis [goid 0009296]; GO_process: taxis [goid 0042330]; flagellar biosynthesis protein 2020630 fliP 946462 fliP Escherichia coli K12 flagellar biosynthesis protein NP_416458.1 2019893 D 83333 CDS NP_416459.1 16129896 946463 2020640..2020909 1 NC_000913.2 flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: glycoprotein biosynthetic process [goid 0009101]; GO_process: flagellum biogenesis [goid 0009296]; flagellar biosynthesis protein 2020909 fliQ 946463 fliQ Escherichia coli K12 flagellar biosynthesis protein NP_416459.1 2020640 D 83333 CDS NP_416460.1 16129897 946464 2020917..2021702 1 NC_000913.2 flagellar biosynthesis; GO_component: flagellum [goid 0019861]; GO_component: peptidoglycan-based cell wall [goid 0009274]; flagellar export pore protein 2021702 fliR 946464 fliR Escherichia coli K12 flagellar export pore protein NP_416460.1 2020917 D 83333 CDS NP_416461.1 16129898 946467 2021992..2022615 1 NC_000913.2 positive regulator for ctr capsule biosynthesis, positive transcription factor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: K antigen biosynthetic process [goid 0009248]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, co-regulator with RcsB 2022615 rcsA 946467 rcsA Escherichia coli K12 DNA-binding transcriptional activator, co-regulator with RcsB NP_416461.1 2021992 D 83333 CDS NP_416462.1 16129899 946468 complement(2022659..2022847) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 2022847 dsrB 946468 dsrB Escherichia coli K12 predicted protein NP_416462.1 2022659 R 83333 CDS NP_416463.4 90111359 946469 2023010..2023237 1 NC_000913.2 predicted protein 2023237 yodD 946469 yodD Escherichia coli K12 predicted protein NP_416463.4 2023010 D 83333 CDS NP_416464.1 16129901 946472 2023535..2024350 1 NC_000913.2 conserved protein 2024350 yedP 946472 yedP Escherichia coli K12 conserved protein NP_416464.1 2023535 D 83333 CDS NP_416465.2 90111360 946471 complement(2024347..2026041) 1 NC_000913.2 predicted diguanylate cyclase 2026041 yedQ 946471 yedQ Escherichia coli K12 predicted diguanylate cyclase NP_416465.2 2024347 R 83333 CDS NP_416466.1 16129903 946466 complement(2026212..2026394) 1 NC_000913.2 predicted protein 2026394 yodC 946466 yodC Escherichia coli K12 predicted protein NP_416466.1 2026212 R 83333 CDS NP_416467.1 16129904 946465 complement(2026473..2027390) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 2027390 yedI 946465 yedI Escherichia coli K12 conserved inner membrane protein NP_416467.1 2026473 R 83333 CDS NP_416468.1 16129905 946461 2027563..2028483 1 NC_000913.2 putative transmembrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 2028483 yedA 946461 yedA Escherichia coli K12 predicted inner membrane protein NP_416468.1 2027563 D 83333 CDS NP_416469.1 16129906 946476 complement(2028472..2028942) 1 NC_000913.2 DNA mismatch endonuclease, patch repair protein; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA repair [goid 0006281]; DNA mismatch endonuclease of very short patch repair 2028942 vsr 946476 vsr Escherichia coli K12 DNA mismatch endonuclease of very short patch repair NP_416469.1 2028472 R 83333 CDS NP_416470.1 16129907 946479 complement(2028923..2030341) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; DNA cytosine methylase 2030341 dcm 946479 dcm Escherichia coli K12 DNA cytosine methylase NP_416470.1 2028923 R 83333 CDS NP_416471.1 16129908 946478 complement(2030408..2031103) 1 NC_000913.2 predicted phosphohydrolase 2031103 yedJ 946478 yedJ Escherichia coli K12 predicted phosphohydrolase NP_416471.1 2030408 R 83333 CDS NP_416472.2 90111361 946477 complement(2031143..2031508) 1 NC_000913.2 predicted inner membrane protein 2031508 yedR 946477 yedR Escherichia coli K12 predicted inner membrane protein NP_416472.2 2031143 R 83333 CDS b4496 2847763 join(2032075..2032737,2032737..2033267) 1 NC_000913.2 pseudogene, outer membrane protein homolog putative outer membrane protein; 2033267 yedS 2847763 yedS Escherichia coli K12 2032075 D 83333 CDS NP_416476.1 16129913 946481 2033859..2034710 1 NC_000913.2 Hsp31 molecular chaperone 2034710 hchA 946481 hchA Escherichia coli K12 Hsp31 molecular chaperone NP_416476.1 2033859 D 83333 CDS NP_416477.1 16129914 946487 complement(2034818..2036176) 1 NC_000913.2 putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; predicted sensory kinase in two-component regulatory system with YedW 2036176 yedV 946487 yedV Escherichia coli K12 predicted sensory kinase in two-component regulatory system with YedW NP_416477.1 2034818 R 83333 CDS NP_416478.2 90111362 946486 complement(2036176..2036847) 1 NC_000913.2 putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding response regulator in two-component system with YedV 2036847 yedW 946486 yedW Escherichia coli K12 predicted DNA-binding response regulator in two-component system with YedV NP_416478.2 2036176 R 83333 CDS NP_416479.1 16129916 946485 2036980..2037393 1 NC_000913.2 conserved protein 2037393 yedX 946485 yedX Escherichia coli K12 conserved protein NP_416479.1 2036980 D 83333 CDS NP_416480.1 16129917 946484 2037502..2038506 1 NC_000913.2 putative reductase; predicted reductase 2038506 yedY 946484 yedY Escherichia coli K12 predicted reductase NP_416480.1 2037502 D 83333 CDS NP_416481.1 16129918 946483 2038507..2039142 1 NC_000913.2 conserved inner membrane protein 2039142 yedZ 946483 yedZ Escherichia coli K12 conserved inner membrane protein NP_416481.1 2038507 D 83333 CDS NP_416482.1 16129919 946480 2039399..2040049 1 NC_000913.2 conserved metal-binding protein 2040049 yodA 946480 yodA Escherichia coli K12 conserved metal-binding protein NP_416482.1 2039399 D 83333 CDS NP_416483.4 90111363 946491 2040392..2040922 1 NC_000913.2 cytochrome b561 homolog 1; GO_process: cytochrome complex assembly [goid 0017004]; predicted cytochrome 2040922 yodB 946491 yodB Escherichia coli K12 predicted cytochrome NP_416483.4 2040392 D 83333 CDS NP_416484.2 90111364 946489 2041675..2042472 1 NC_000913.2 conserved protein 2042472 mtfA 946489 mtfA Escherichia coli K12 conserved protein NP_416484.2 2041675 D 83333 CDS NP_416485.4 145698281 946498 2042962..2050038 1 NC_000913.2 putative factor; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; adhesin 2050038 yeeJ 946498 yeeJ Escherichia coli K12 adhesin NP_416485.4 2042962 D 83333 CDS b4497 2847764 complement(2050300..2051352) 1 NC_000913.2 Putative glycosyltransferase; 2051352 yeeL 2847764 yeeL Escherichia coli K12 2050300 R 83333 CDS NP_416488.1 16129925 946495 2051667..2052983 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: chorismate biosynthetic process [goid 0009423]; shikimate transporter 2052983 shiA 946495 shiA Escherichia coli K12 shikimate transporter NP_416488.1 2051667 D 83333 CDS NP_416489.1 16129926 946508 2053085..2054539 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; AMP nucleosidase 2054539 amn 946508 amn Escherichia coli K12 AMP nucleosidase NP_416489.1 2053085 D 83333 CDS NP_416490.1 16129927 946493 2054882..2055598 1 NC_000913.2 conserved protein 2055598 yeeN 946493 yeeN Escherichia coli K12 conserved protein NP_416490.1 2054882 D 83333 CDS NP_416491.1 16129928 946506 complement(2056227..2057870) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted multidrug efflux system 2057870 yeeO 946506 yeeO Escherichia coli K12 predicted multidrug efflux system NP_416491.1 2056227 R 83333 CDS NP_416492.1 16129929 946502 complement(2057988..2058938) 1 NC_000913.2 transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: cysteine biosynthetic process [goid 0019344]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of cysteine biosynthesis 2058938 cbl 946502 cbl Escherichia coli K12 DNA-binding transcriptional activator of cysteine biosynthesis NP_416492.1 2057988 R 83333 CDS NP_416493.1 16129930 946501 complement(2059040..2059957) 1 NC_000913.2 nitrogen assimilation control protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator of nitrogen assimilation 2059957 nac 946501 nac Escherichia coli K12 DNA-binding transcriptional dual regulator of nitrogen assimilation NP_416493.1 2059040 R 83333 CDS NP_416494.1 16129931 945273 complement(2060415..2061347) 1 NC_000913.2 conserved protein with NAD(P)-binding Rossmann-fold domain 2061347 erfK 945273 erfK Escherichia coli K12 conserved protein with NAD(P)-binding Rossmann-fold domain NP_416494.1 2060415 R 83333 CDS NP_416495.1 16129932 946517 complement(2061412..2062491) 1 NC_000913.2 nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase 2062491 cobT 946517 cobT Escherichia coli K12 nicotinate-nucleotide dimethylbenzimidazole-P phophoribosyl transferase NP_416495.1 2061412 R 83333 CDS NP_416496.1 16129933 946520 complement(2062503..2063246) 1 NC_000913.2 cobalamin 5'-phosphate synthase 2063246 cobS 946520 cobS Escherichia coli K12 cobalamin 5'-phosphate synthase NP_416496.1 2062503 R 83333 CDS NP_416497.1 16129934 946519 complement(2063243..2063788) 1 NC_000913.2 cobinamide kinase/cobinamide phosphate guanylyltransferase; bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase 2063788 cobU 946519 cobU Escherichia coli K12 bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase NP_416497.1 2063243 R 83333 CDS b4639 5625565 complement(2064092..2064178) 1 NC_000913.2 pseudogene; 2064178 yeeH 5625565 yeeH Escherichia coli K12 2064092 R 83333 CDS NP_416498.1 16129935 946507 complement(2064329..2065345) 1 NC_000913.2 IS5 transposase and trans-activator 2065345 insH 946507 insH Escherichia coli K12 IS5 transposase and trans-activator NP_416498.1 2064329 R 83333 CDS b4640 5625566 complement(join(2065384..2065482,2065482..2065916)) 1 NC_000913.2 pseudogene, CP4-44 putative prophage remnant; 2065916 yoeG 5625566 yoeG Escherichia coli K12 2065384 R 83333 CDS b4641 5625567 complement(2066285..2066443) 1 NC_000913.2 pseudogene, CP4-44 putative prophage remnant; 2066443 yoeH 5625567 yoeH Escherichia coli K12 2066285 R 83333 CDS b4582 4056042 join(2066659..2066962,2068294..2068498) 1 NC_000913.2 CP4-44 prophage; predicted disrupted hemin or colicin receptor interrupted by IS2 and C-terminal deletion; 2068498 yoeA 4056042 yoeA Escherichia coli K12 2066659 D 83333 CDS NP_416500.1 16129937 946403 complement(2066976..2067881) 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB' 2067881 insD 946403 insD Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element transposase InsAB' NP_416500.1 2066976 R 83333 CDS YP_026163.2 145698282 946455 complement(2067839..2068204) 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element repressor InsA 2068204 insC 946455 insC Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element repressor InsA YP_026163.2 2067839 R 83333 CDS b1999 946524 2068684..2069235 1 NC_000913.2 pseudogene, CP4-44 prophage; predicted GTP-binding protein putative histone; 2069235 yeeP 946524 yeeP Escherichia coli K12 2068684 D 83333 CDS YP_026164.1 49176177 946540 2069563..2072682 1 NC_000913.2 antigen 43, phase-variable bipartite outer membrane fluffing protein; CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter 2072682 flu 946540 flu Escherichia coli K12 CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter YP_026164.1 2069563 D 83333 CDS NP_416505.2 90111368 946512 2072803..2074335 1 NC_000913.2 CP4-44 prophage; predicted membrane protein 2074335 yeeR 946512 yeeR Escherichia coli K12 CP4-44 prophage; predicted membrane protein NP_416505.2 2072803 D 83333 CDS NP_416506.1 16129943 946514 2074332..2074778 1 NC_000913.2 putative DNA repair protein, RADC family; CP4-44 prophage; predicted DNA repair protein 2074778 yeeS 946514 yeeS Escherichia coli K12 CP4-44 prophage; predicted DNA repair protein NP_416506.1 2074332 D 83333 CDS NP_416507.1 16129944 946513 2074841..2075062 1 NC_000913.2 CP4-44 prophage; predicted protein 2075062 yeeT 946513 yeeT Escherichia coli K12 CP4-44 prophage; predicted protein NP_416507.1 2074841 D 83333 CDS NP_416508.1 16129945 946510 2075136..2075504 1 NC_000913.2 putative structural protein; CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system 2075504 yeeU 946510 yeeU Escherichia coli K12 CP4-44 prophage; antitoxin of the YeeV-YeeU toxin-antitoxin system NP_416508.1 2075136 D 83333 CDS NP_416509.1 16129946 946534 2075593..2075967 1 NC_000913.2 CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system 2075967 yeeV 946534 yeeV Escherichia coli K12 CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system NP_416509.1 2075593 D 83333 CDS b2006 946535 2075964..2076131 1 NC_000913.2 CP4-44 prophage; predicted protein; 2076131 yeeW 946535 yeeW Escherichia coli K12 2075964 D 83333 CDS b4642 5625568 complement(2076573..2076701) 1 NC_000913.2 pseudogene, CP4-44 putative prophage remnant; 2076701 yoeD 5625568 yoeD Escherichia coli K12 2076573 R 83333 CDS b4538 1450273 2076770..2076955 1 NC_000913.2 pseudogene, CP4-44 putative prophage remnant; 2076955 yoeF 1450273 yoeF Escherichia coli K12 2076770 D 83333 CDS NP_416511.4 145698283 946541 complement(2077056..2077385) 1 NC_000913.2 putative alpha helix protein; conserved protein 2077385 yeeX 946541 yeeX Escherichia coli K12 conserved protein NP_416511.4 2077056 R 83333 CDS NP_416512.1 16129949 946545 complement(2077557..2078615) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 2078615 yeeA 946545 yeeA Escherichia coli K12 conserved inner membrane protein NP_416512.1 2077557 R 83333 CDS NP_416513.1 16129950 946546 complement(2078813..2079286) 1 NC_000913.2 SbmC protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA gyrase inhibitor 2079286 sbmC 946546 sbmC Escherichia coli K12 DNA gyrase inhibitor NP_416513.1 2078813 R 83333 CDS NP_416514.4 162135904 946518 complement(2079405..2080571) 1 NC_000913.2 penicillin binding protein 6b; GO_component: peptidoglycan-based cell wall [goid 0009274]; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) 2080571 dacD 946518 dacD Escherichia coli K12 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b) NP_416514.4 2079405 R 83333 CDS NP_416515.1 16129952 946529 2080780..2082207 1 NC_000913.2 exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase; GO_process: DNA catabolic process [goid 0006308]; exonuclease I 2082207 sbcB 946529 sbcB Escherichia coli K12 exonuclease I NP_416515.1 2080780 D 83333 CDS NP_416516.1 16129953 946539 complement(2082250..2082477) 1 NC_000913.2 conserved protein 2082477 yeeD 946539 yeeD Escherichia coli K12 conserved protein NP_416516.1 2082250 R 83333 CDS NP_416517.1 16129954 946526 complement(2082491..2083549) 1 NC_000913.2 putative transport system permease protein; predicted inner membrane protein 2083549 yeeE 946526 yeeE Escherichia coli K12 predicted inner membrane protein NP_416517.1 2082491 R 83333 CDS NP_416518.2 90111370 946533 complement(2083728..2085086) 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted amino-acid transporter 2085086 yeeF 946533 yeeF Escherichia coli K12 predicted amino-acid transporter NP_416518.2 2083728 R 83333 CDS NP_416519.4 90111371 946532 complement(2085353..2086282) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2086282 yeeY 946532 yeeY Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416519.4 2085353 R 83333 CDS NP_416520.1 16129957 946538 complement(2086328..2087152) 1 NC_000913.2 putative enzyme of sugar metabolism; GO_process: carbohydrate catabolic process [goid 0016052]; predicted epimerase, with NAD(P)-binding Rossmann-fold domain 2087152 yeeZ 946538 yeeZ Escherichia coli K12 predicted epimerase, with NAD(P)-binding Rossmann-fold domain NP_416520.1 2086328 R 83333 CDS YP_588458.1 94541116 1450274 complement(2087235..2087489) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; toxin of the YoeB-YefM toxin-antitoxin system 2087489 yoeB 1450274 yoeB Escherichia coli K12 toxin of the YoeB-YefM toxin-antitoxin system YP_588458.1 2087235 R 83333 CDS NP_416521.2 90111372 946542 complement(2087486..2087737) 1 NC_000913.2 antitoxin of the YoeB-YefM toxin-antitoxin system 2087737 yefM 946542 yefM Escherichia coli K12 antitoxin of the YoeB-YefM toxin-antitoxin system NP_416521.2 2087486 R 83333 CDS NP_416522.1 16129959 946547 2088020..2088070 1 NC_000913.2 GO_process: histidine biosynthetic process [goid 0000105]; his operon leader peptide 2088070 hisL 946547 hisL Escherichia coli K12 his operon leader peptide NP_416522.1 2088020 D 83333 CDS NP_416523.1 16129960 946549 2088216..2089115 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; ATP phosphoribosyltransferase 2089115 hisG 946549 hisG Escherichia coli K12 ATP phosphoribosyltransferase NP_416523.1 2088216 D 83333 CDS NP_416524.1 16129961 946531 2089121..2090425 1 NC_000913.2 L-histidinal:NAD+ oxidoreductase; L-histidinol:NAD+ oxidoreductase; GO_process: histidine biosynthetic process [goid 0000105]; bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 2090425 hisD 946531 hisD Escherichia coli K12 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase NP_416524.1 2089121 D 83333 CDS NP_416525.1 16129962 946551 2090422..2091492 1 NC_000913.2 GO_process: histidine biosynthetic process [goid 0000105]; histidinol-phosphate aminotransferase 2091492 hisC 946551 hisC Escherichia coli K12 histidinol-phosphate aminotransferase NP_416525.1 2090422 D 83333 CDS NP_416526.4 90111373 946552 2091492..2092559 1 NC_000913.2 imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase; GO_process: histidine biosynthetic process [goid 0000105]; fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase 2092559 hisB 946552 hisB Escherichia coli K12 fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase NP_416526.4 2091492 D 83333 CDS NP_416527.1 16129964 946544 2092559..2093149 1 NC_000913.2 glutamine amidotransferase subunit of heterodimer with HisF = imidazole glycerol phosphate synthase holoenzyme; GO_process: histidine biosynthetic process [goid 0000105]; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF 2093149 hisH 946544 hisH Escherichia coli K12 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit with HisF NP_416527.1 2092559 D 83333 CDS NP_416528.2 90111374 946521 2093149..2093886 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase 2093886 hisA 946521 hisA Escherichia coli K12 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase NP_416528.2 2093149 D 83333 CDS NP_416529.1 16129966 946516 2093868..2094644 1 NC_000913.2 imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme; GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; imidazole glycerol phosphate synthase, catalytic subunit with HisH 2094644 hisF 946516 hisF Escherichia coli K12 imidazole glycerol phosphate synthase, catalytic subunit with HisH NP_416529.1 2093868 D 83333 CDS NP_416530.1 16129967 946515 2094638..2095249 1 NC_000913.2 phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: histidine biosynthetic process [goid 0000105]; fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 2095249 hisI 946515 hisI Escherichia coli K12 fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase NP_416530.1 2094638 D 83333 CDS NP_416531.4 90111375 946553 complement(2095345..2096325) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; regulator of length of O-antigen component of lipopolysaccharide chains 2096325 cld 946553 cld Escherichia coli K12 regulator of length of O-antigen component of lipopolysaccharide chains NP_416531.4 2095345 R 83333 CDS NP_416532.1 16129969 946571 complement(2096471..2097637) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; UDP-glucose 6-dehydrogenase 2097637 ugd 946571 ugd Escherichia coli K12 UDP-glucose 6-dehydrogenase NP_416532.1 2096471 R 83333 CDS NP_416533.1 16129970 946554 complement(2097886..2099292) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, oxidative branch [goid 0009051]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; gluconate-6-phosphate dehydrogenase, decarboxylating 2099292 gnd 946554 gnd Escherichia coli K12 gluconate-6-phosphate dehydrogenase, decarboxylating NP_416533.1 2097886 R 83333 CDS b4571 4056030 complement(join(2099420..2099768,2100968..2101413)) 1 NC_000913.2 lipopolysaccharide biosynthesis protein, N-ter fragment (pseudogene); 2101413 wbbL 4056030 wbbL Escherichia coli K12 2099420 R 83333 CDS NP_416535.1 16129971 946577 complement(2099919..2100935) 1 NC_000913.2 IS5 transposase and trans-activator 2100935 insH 946577 insH Escherichia coli K12 IS5 transposase and trans-activator NP_416535.1 2099919 R 83333 CDS NP_416536.1 16129972 946555 complement(2101415..2102533) 1 NC_000913.2 putative glucose transferase; lipopolysaccharide biosynthesis protein 2102533 wbbK 946555 wbbK Escherichia coli K12 lipopolysaccharide biosynthesis protein NP_416536.1 2101415 R 83333 CDS NP_416537.1 16129973 946556 complement(2102518..2103108) 1 NC_000913.2 putative O-acetyl transferase; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; predicted acyl transferase 2103108 wbbJ 946556 wbbJ Escherichia coli K12 predicted acyl transferase NP_416537.1 2102518 R 83333 CDS NP_416538.1 16129974 947041 complement(2103089..2104081) 1 NC_000913.2 putative Galf transferase; conserved protein 2104081 wbbI 947041 wbbI Escherichia coli K12 conserved protein NP_416538.1 2103089 R 83333 CDS NP_416539.1 16129975 945179 complement(2104084..2105250) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_function: O antigen polymerase activity [goid 0008755]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; O-antigen polymerase 2105250 rfc 945179 rfc Escherichia coli K12 O-antigen polymerase NP_416539.1 2104084 R 83333 CDS NP_416540.1 16129976 945235 complement(2105250..2106353) 1 NC_000913.2 UDP-galactopyranose mutase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; UDP-galactopyranose mutase, FAD/NAD(P)-binding 2106353 glf 945235 glf Escherichia coli K12 UDP-galactopyranose mutase, FAD/NAD(P)-binding NP_416540.1 2105250 R 83333 CDS NP_416541.1 16129977 946557 complement(2106361..2107608) 1 NC_000913.2 putative O-antigen transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; predicted polisoprenol-linked O-antigen transporter 2107608 rfbX 946557 rfbX Escherichia coli K12 predicted polisoprenol-linked O-antigen transporter NP_416541.1 2106361 R 83333 CDS NP_416542.1 16129978 947482 complement(2107605..2108162) 1 NC_000913.2 dTDP-6-deoxy-D-glucose-3,5 epimerase; GO_component: cytoplasm [goid 0005737]; GO_function: protein homodimerization activity [goid 0042803]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; GO_process: dTDP-rhamnose biosynthetic process [goid 0019305]; dTDP-4-deoxyrhamnose-3,5-epimerase 2108162 rfbC 947482 rfbC Escherichia coli K12 dTDP-4-deoxyrhamnose-3,5-epimerase NP_416542.1 2107605 R 83333 CDS NP_416543.1 16129979 945154 complement(2108162..2109043) 1 NC_000913.2 dTDP-glucose pyrophosphorylase; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_function: magnesium ion binding [goid 0000287]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: dTDP-rhamnose biosynthetic process [goid 0019305]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; glucose-1-phosphate thymidylyltransferase 2109043 rfbA 945154 rfbA Escherichia coli K12 glucose-1-phosphate thymidylyltransferase NP_416543.1 2108162 R 83333 CDS NP_416544.1 16129980 947117 complement(2109101..2110000) 1 NC_000913.2 dTDP-6-deoxy-L-mannose-dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase 2110000 rfbD 947117 rfbD Escherichia coli K12 dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase NP_416544.1 2109101 R 83333 CDS NP_416545.1 16129981 945276 complement(2110000..2111085) 1 NC_000913.2 dTDP-glucose 4,6 dehydratase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: NAD biosynthetic process [goid 0009435]; dTDP-glucose 4,6 dehydratase, NAD(P)-binding 2111085 rfbB 945276 rfbB Escherichia coli K12 dTDP-glucose 4,6 dehydratase, NAD(P)-binding NP_416545.1 2110000 R 83333 CDS NP_416546.1 16129982 946560 complement(2111458..2112351) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; predicted subunit with GalU 2112351 galF 946560 galF Escherichia coli K12 predicted subunit with GalU NP_416546.1 2111458 R 83333 CDS NP_416547.1 16129983 946561 complement(2112526..2113920) 1 NC_000913.2 putative colanic acid biosynthesis protein; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted colanic acid biosynthesis protein 2113920 wcaM 946561 wcaM Escherichia coli K12 predicted colanic acid biosynthesis protein NP_416547.1 2112526 R 83333 CDS NP_416548.1 16129984 946565 complement(2113931..2115151) 1 NC_000913.2 putative colanic acid biosynthesis glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase 2115151 wcaL 946565 wcaL Escherichia coli K12 predicted glycosyl transferase NP_416548.1 2113931 R 83333 CDS NP_416549.1 16129985 946569 complement(2115148..2116428) 1 NC_000913.2 putative galactokinase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted pyruvyl transferase 2116428 wcaK 946569 wcaK Escherichia coli K12 predicted pyruvyl transferase NP_416549.1 2115148 R 83333 CDS NP_416550.1 16129986 946581 complement(2116704..2118182) 1 NC_000913.2 probable export protein; colanic acid exporter 2118182 wzxC 946581 wzxC Escherichia coli K12 colanic acid exporter NP_416550.1 2116704 R 83333 CDS NP_416551.1 16129987 946583 complement(2118184..2119578) 1 NC_000913.2 putative UDP-glucose lipid carrier transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted UDP-glucose lipid carrier transferase 2119578 wcaJ 946583 wcaJ Escherichia coli K12 predicted UDP-glucose lipid carrier transferase NP_416551.1 2118184 R 83333 CDS NP_416552.1 16129988 946574 complement(2119633..2121003) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; phosphomannomutase 2121003 cpsG 946574 cpsG Escherichia coli K12 phosphomannomutase NP_416552.1 2119633 R 83333 CDS NP_416553.1 16129989 946580 complement(2121108..2122544) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: response to desiccation [goid 0009269]; mannose-1-phosphate guanyltransferase 2122544 cpsB 946580 cpsB Escherichia coli K12 mannose-1-phosphate guanyltransferase NP_416553.1 2121108 R 83333 CDS NP_416554.1 16129990 946588 complement(2122547..2123770) 1 NC_000913.2 putative colanic biosynthesis glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase 2123770 wcaI 946588 wcaI Escherichia coli K12 predicted glycosyl transferase NP_416554.1 2122547 R 83333 CDS NP_416555.2 90111376 946559 complement(2123767..2124246) 1 NC_000913.2 GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: colanic acid biosynthetic process [goid 0009242]; GDP-mannose mannosyl hydrolase 2124246 gmm 946559 gmm Escherichia coli K12 GDP-mannose mannosyl hydrolase NP_416555.2 2123767 R 83333 CDS NP_416556.1 16129992 946563 complement(2124249..2125214) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: response to desiccation [goid 0009269]; bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase 2125214 fcl 946563 fcl Escherichia coli K12 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase NP_416556.1 2124249 R 83333 CDS NP_416557.1 16129993 946562 complement(2125217..2126338) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: NAD biosynthetic process [goid 0009435]; GO_process: response to desiccation [goid 0009269]; GDP-D-mannose dehydratase, NAD(P)-binding 2126338 gmd 946562 gmd Escherichia coli K12 GDP-D-mannose dehydratase, NAD(P)-binding NP_416557.1 2125217 R 83333 CDS NP_416558.1 16129994 946578 complement(2126364..2126912) 1 NC_000913.2 putative transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted acyl transferase 2126912 wcaF 946578 wcaF Escherichia coli K12 predicted acyl transferase NP_416558.1 2126364 R 83333 CDS NP_416559.1 16129995 946543 complement(2126928..2127674) 1 NC_000913.2 putative colanic acid biosynthesis glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase 2127674 wcaE 946543 wcaE Escherichia coli K12 predicted glycosyl transferase NP_416559.1 2126928 R 83333 CDS NP_416560.1 16129996 946550 complement(2127685..2128902) 1 NC_000913.2 putative colanic acid polymerase; predicted colanic acid polymerase 2128902 wcaD 946550 wcaD Escherichia coli K12 predicted colanic acid polymerase NP_416560.1 2127685 R 83333 CDS NP_416561.1 16129997 946579 complement(2128877..2130094) 1 NC_000913.2 putative glycosyl transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase 2130094 wcaC 946579 wcaC Escherichia coli K12 predicted glycosyl transferase NP_416561.1 2128877 R 83333 CDS NP_416562.1 16129998 946573 complement(2130091..2130579) 1 NC_000913.2 putative transferase; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted acyl transferase 2130579 wcaB 946573 wcaB Escherichia coli K12 predicted acyl transferase NP_416562.1 2130091 R 83333 CDS NP_416563.1 16129999 946570 complement(2130582..2131421) 1 NC_000913.2 putative regulator; GO_process: colanic acid biosynthetic process [goid 0009242]; predicted glycosyl transferase 2131421 wcaA 946570 wcaA Escherichia coli K12 predicted glycosyl transferase NP_416563.1 2130582 R 83333 CDS NP_416564.4 90111377 946567 complement(2131514..2133676) 1 NC_000913.2 GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: protein modification [goid 0006464]; protein-tyrosine kinase 2133676 wzc 946567 wzc Escherichia coli K12 protein-tyrosine kinase NP_416564.4 2131514 R 83333 CDS NP_416565.1 16130001 946564 complement(2133679..2134122) 1 NC_000913.2 low molecular weight protein-tyrosine-phosphatase; GO_process: colanic acid biosynthetic process [goid 0009242]; protein-tyrosine phosphatase 2134122 wzb 946564 wzb Escherichia coli K12 protein-tyrosine phosphatase NP_416565.1 2133679 R 83333 CDS NP_416566.1 16130002 946558 complement(2134128..2135267) 1 NC_000913.2 putative polysaccharide export protein; GO_process: colanic acid biosynthetic process [goid 0009242]; lipoprotein required for capsular polysaccharide translocation through the outer membrane 2135267 wza 946558 wza Escherichia coli K12 lipoprotein required for capsular polysaccharide translocation through the outer membrane NP_416566.1 2134128 R 83333 CDS NP_416567.4 90111378 946566 2135926..2137509 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; fused predicted membrane protein/predicted membrane protein 2137509 yegH 946566 yegH Escherichia coli K12 fused predicted membrane protein/predicted membrane protein NP_416567.4 2135926 D 83333 CDS NP_416568.1 16130004 946582 complement(2137783..2139636) 1 NC_000913.2 suppressor of ompF assembly mutants; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; predicted assembly protein 2139636 asmA 946582 asmA Escherichia coli K12 predicted assembly protein NP_416568.1 2137783 R 83333 CDS NP_416569.1 16130005 946593 complement(2139658..2140239) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 2'-deoxycytidine 5'-triphosphate deaminase 2140239 dcd 946593 dcd Escherichia coli K12 2'-deoxycytidine 5'-triphosphate deaminase NP_416569.1 2139658 R 83333 CDS NP_416570.2 90111379 946597 complement(2140331..2140972) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uridine/cytidine kinase 2140972 udk 946597 udk Escherichia coli K12 uridine/cytidine kinase NP_416570.2 2140331 R 83333 CDS NP_416571.1 16130007 946600 2141290..2144607 1 NC_000913.2 putative sensor-type protein; GO_process: protein modification [goid 0006464]; predicted diguanylate cyclase, GGDEF domain signalling protein 2144607 yegE 946600 yegE Escherichia coli K12 predicted diguanylate cyclase, GGDEF domain signalling protein NP_416571.1 2141290 D 83333 CDS NP_416572.1 16130008 947371 complement(2144716..2145564) 1 NC_000913.2 3-methyl-adenine DNA glycosylase II, inducible; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; 3-methyl-adenine DNA glycosylase II 2145564 alkA 947371 alkA Escherichia coli K12 3-methyl-adenine DNA glycosylase II NP_416572.1 2144716 R 83333 CDS NP_416573.4 90111380 947234 2145698..2147050 1 NC_000913.2 putative heat shock protein; GO_process: protein folding [goid 0006457]; predicted chaperone 2147050 yegD 947234 yegD Escherichia coli K12 predicted chaperone NP_416573.4 2145698 D 83333 CDS NP_416574.1 16130010 947159 complement(2147063..2149009) 1 NC_000913.2 putative chaperonin; conserved protein 2149009 yegI 947159 yegI Escherichia coli K12 conserved protein NP_416574.1 2147063 R 83333 CDS NP_416575.1 16130011 947201 2149209..2149670 1 NC_000913.2 predicted protein 2149670 yegJ 947201 yegJ Escherichia coli K12 predicted protein NP_416575.1 2149209 D 83333 CDS NP_416576.1 16130012 947269 complement(2149735..2150496) 1 NC_000913.2 predicted protein 2150496 yegK 947269 yegK Escherichia coli K12 predicted protein NP_416576.1 2149735 R 83333 CDS NP_416577.1 16130013 946602 complement(2150493..2151152) 1 NC_000913.2 conserved protein 2151152 yegL 946602 yegL Escherichia coli K12 conserved protein NP_416577.1 2150493 R 83333 CDS NP_416578.2 90111381 946604 2152040..2153287 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system, subunit A 2153287 mdtA 946604 mdtA Escherichia coli K12 multidrug efflux system, subunit A NP_416578.2 2152040 D 83333 CDS NP_416579.1 16130015 946606 2153287..2156409 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; multidrug efflux system, subunit B 2156409 mdtB 946606 mdtB Escherichia coli K12 multidrug efflux system, subunit B NP_416579.1 2153287 D 83333 CDS NP_416580.1 16130016 946608 2156410..2159487 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; multidrug efflux system, subunit C 2159487 mdtC 946608 mdtC Escherichia coli K12 multidrug efflux system, subunit C NP_416580.1 2156410 D 83333 CDS NP_416581.1 16130017 946601 2159488..2160903 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 2160903 mdtD 946601 mdtD Escherichia coli K12 multidrug efflux system protein NP_416581.1 2159488 D 83333 CDS NP_416582.1 16130018 946611 2160900..2162303 1 NC_000913.2 sensor protein (for BaeR); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with BaeR 2162303 baeS 946611 baeS Escherichia coli K12 sensory histidine kinase in two-component regulatory system with BaeR NP_416582.1 2160900 D 83333 CDS NP_416583.1 16130019 946605 2162300..2163022 1 NC_000913.2 transcriptional response regulatory protein (sensor BaeS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with BaeS 2163022 baeR 946605 baeR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with BaeS NP_416583.1 2162300 D 83333 CDS NP_416584.4 90111382 947095 2163213..2163545 1 NC_000913.2 predicted protein 2163545 yegP 947095 yegP Escherichia coli K12 predicted protein NP_416584.4 2163213 D 83333 CDS NP_416585.1 16130021 946609 2163692..2165053 1 NC_000913.2 predicted peptidase 2165053 yegQ 946609 yegQ Escherichia coli K12 predicted peptidase NP_416585.1 2163692 D 83333 CDS NP_416586.1 16130022 945404 complement(2165326..2165544) 1 NC_000913.2 prophage P2 ogr protein; DNA-binding transcriptional regulator prophage P2 remnant 2165544 ogrK 945404 ogrK Escherichia coli K12 DNA-binding transcriptional regulator prophage P2 remnant NP_416586.1 2165326 R 83333 CDS b2083 949050 complement(2165626..2165838) 1 NC_000913.2 pseudogene, gpD phage P2-like protein D; 2165838 yegZ 949050 yegZ Escherichia coli K12 2165626 R 83333 CDS NP_416589.2 90111383 946613 complement(2166013..2166330) 1 NC_000913.2 predicted protein 2166330 yegR 946613 yegR Escherichia coli K12 predicted protein NP_416589.2 2166013 R 83333 CDS NP_416590.1 16130026 946626 2166736..2167635 1 NC_000913.2 phosphatidylglycerol kinase, metal-dependent 2167635 yegS 946626 yegS Escherichia coli K12 phosphatidylglycerol kinase, metal-dependent NP_416590.1 2166736 D 83333 CDS b4498 2847672 complement(join(2167717..2168191,2169453..2169751)) 1 NC_000913.2 pseudogene, repressor for gat operon split galactitol utilization operon repressor, fragment 2 split galactitol utilization operon repressor, interrupted interrupted by IS3; 2169751 gatR 2847672 gatR Escherichia coli K12 2167717 R 83333 CDS NP_416592.1 16130027 946616 2168251..2168559 1 NC_000913.2 IS3 element protein InsE 2168559 insE 946616 insE Escherichia coli K12 IS3 element protein InsE NP_416592.1 2168251 D 83333 CDS NP_416593.1 16130028 946629 2168556..2169422 1 NC_000913.2 IS3 element protein InsF 2169422 insF 946629 insF Escherichia coli K12 IS3 element protein InsF NP_416593.1 2168556 D 83333 CDS NP_416594.1 16130029 946598 complement(2169857..2170897) 1 NC_000913.2 galactitol-1-phosphate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding 2170897 gatD 946598 gatD Escherichia coli K12 galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding NP_416594.1 2169857 R 83333 CDS NP_416595.1 16130030 946603 complement(2170945..2172300) 1 NC_000913.2 PTS system galactitol-specific enzyme IIC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-specific enzyme IIC component of PTS 2172300 gatC 946603 gatC Escherichia coli K12 galactitol-specific enzyme IIC component of PTS NP_416595.1 2170945 R 83333 CDS NP_416596.1 16130031 946610 complement(2172304..2172588) 1 NC_000913.2 galactitol-specific enzyme IIB of phosphotransferase system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-specific enzyme IIB component of PTS 2172588 gatB 946610 gatB Escherichia coli K12 galactitol-specific enzyme IIB component of PTS NP_416596.1 2172304 R 83333 CDS NP_416597.1 16130032 946633 complement(2172619..2173071) 1 NC_000913.2 galactitol-specific enzyme IIA of phosphotransferase system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; galactitol-specific enzyme IIA component of PTS 2173071 gatA 946633 gatA Escherichia coli K12 galactitol-specific enzyme IIA component of PTS NP_416597.1 2172619 R 83333 CDS NP_416598.1 16130033 946641 complement(2173081..2174343) 1 NC_000913.2 putative tagatose 6-phosphate kinase 1; GO_process: carbohydrate catabolic process [goid 0016052]; D-tagatose 1,6-bisphosphate aldolase 2, subunit 2174343 gatZ 946641 gatZ Escherichia coli K12 D-tagatose 1,6-bisphosphate aldolase 2, subunit NP_416598.1 2173081 R 83333 CDS NP_416599.2 90111384 946636 complement(2174372..2175226) 1 NC_000913.2 tagatose-bisphosphate aldolase 1; GO_process: carbohydrate catabolic process [goid 0016052]; D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit 2175226 gatY 946636 gatY Escherichia coli K12 D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit NP_416599.2 2174372 R 83333 CDS NP_416600.4 90111385 946632 complement(2175534..2176586) 1 NC_000913.2 GO_process: glycolysis [goid 0006096]; fructose-bisphosphate aldolase class I 2176586 fbaB 946632 fbaB Escherichia coli K12 fructose-bisphosphate aldolase class I NP_416600.4 2175534 R 83333 CDS NP_416601.1 16130036 946638 2176843..2178120 1 NC_000913.2 putative nucleoside permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted nucleoside transporter 2178120 yegT 946638 yegT Escherichia coli K12 predicted nucleoside transporter NP_416601.1 2176843 D 83333 CDS NP_416602.1 16130037 946630 2178117..2179121 1 NC_000913.2 predicted hydrolase 2179121 yegU 946630 yegU Escherichia coli K12 predicted hydrolase NP_416602.1 2178117 D 83333 CDS NP_416603.1 16130038 946637 2179118..2180083 1 NC_000913.2 putative kinase; predicted kinase 2180083 yegV 946637 yegV Escherichia coli K12 predicted kinase NP_416603.1 2179118 D 83333 CDS NP_416604.1 16130039 946639 complement(2180057..2180803) 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2180803 yegW 946639 yegW Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416604.1 2180057 R 83333 CDS NP_416605.2 90111386 945543 complement(2180855..2181673) 1 NC_000913.2 predicted hydrolase 2181673 yegX 945543 yegX Escherichia coli K12 predicted hydrolase NP_416605.2 2180855 R 83333 CDS NP_416606.1 16130041 946459 complement(2181738..2182538) 1 NC_000913.2 phosphomethylpyrimidine kinase; GO_process: thiamin biosynthetic process [goid 0009228]; bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase 2182538 thiD 946459 thiD Escherichia coli K12 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase NP_416606.1 2181738 R 83333 CDS NP_416607.1 16130042 945142 complement(2182535..2183323) 1 NC_000913.2 GO_process: thiamin biosynthetic process [goid 0009228]; hydoxyethylthiazole kinase 2183323 thiM 945142 thiM Escherichia coli K12 hydoxyethylthiazole kinase NP_416607.1 2182535 R 83333 CDS NP_416608.1 16130043 947114 complement(2183546..2183818) 1 NC_000913.2 conserved protein 2183818 rcnR 947114 rcnR Escherichia coli K12 conserved protein NP_416608.1 2183546 R 83333 CDS NP_416609.1 16130044 949078 2183939..2184763 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; membrane protein conferring nickel and cobalt resistance 2184763 rcnA 949078 rcnA Escherichia coli K12 membrane protein conferring nickel and cobalt resistance NP_416609.1 2183939 D 83333 CDS NP_416610.4 90111387 949080 2184982..2185320 1 NC_000913.2 predicted protein 2185320 yohN 949080 yohN Escherichia coli K12 predicted protein NP_416610.4 2184982 D 83333 CDS NP_416611.1 16130046 946642 complement(2185402..2186436) 1 NC_000913.2 putative type-1 fimbrial protein; predicted fimbrial-like adhesin protein 2186436 yehA 946642 yehA Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416611.1 2185402 R 83333 CDS NP_416612.1 16130047 946617 complement(2186452..2188932) 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 2188932 yehB 946617 yehB Escherichia coli K12 predicted outer membrane protein NP_416612.1 2186452 R 83333 CDS NP_416613.1 16130048 946621 complement(2188948..2189667) 1 NC_000913.2 putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 2189667 yehC 946621 yehC Escherichia coli K12 predicted periplasmic pilin chaperone NP_416613.1 2188948 R 83333 CDS NP_416614.1 16130049 946619 complement(2189702..2190244) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 2190244 yehD 946619 yehD Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416614.1 2189702 R 83333 CDS NP_416615.1 16130050 946615 complement(2190537..2190818) 1 NC_000913.2 predicted protein 2190818 yehE 946615 yehE Escherichia coli K12 predicted protein NP_416615.1 2190537 R 83333 CDS NP_416616.4 90111388 946627 complement(2191081..2192190) 1 NC_000913.2 putative ATPase; antiporter inner membrane protein 2192190 mrp 946627 mrp Escherichia coli K12 antiporter inner membrane protein NP_416616.4 2191081 R 83333 CDS NP_416617.1 16130052 946643 2192322..2194355 1 NC_000913.2 methionine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; methionyl-tRNA synthetase 2194355 metG 946643 metG Escherichia coli K12 methionyl-tRNA synthetase NP_416617.1 2192322 D 83333 CDS b4499 2847726 join(2194496..2197342,2197344..2198291) 1 NC_000913.2 pseudogene molybdate metabolism regulator, first fragment molybdate metabolism regulator, second fragment 2; 2198291 yehH 2847726 yehH Escherichia coli K12 2194496 D 83333 CDS NP_416621.1 16130056 946649 2198301..2201933 1 NC_000913.2 putative regulator; conserved protein 2201933 yehI 946649 yehI Escherichia coli K12 conserved protein NP_416621.1 2198301 D 83333 CDS YP_588459.1 94541136 4056035 2201994..2202311 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 2202311 yehK 4056035 yehK Escherichia coli K12 predicted protein YP_588459.1 2201994 D 83333 CDS NP_416623.2 90111389 946656 2202618..2203706 1 NC_000913.2 GO_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; predicted transporter subunit: ATP-binding component of ABC superfamily 2203706 yehL 946656 yehL Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_416623.2 2202618 D 83333 CDS NP_416624.1 16130058 946651 2203717..2205996 1 NC_000913.2 predicted protein 2205996 yehM 946651 yehM Escherichia coli K12 predicted protein NP_416624.1 2203717 D 83333 CDS NP_416625.1 16130059 946652 2205989..2207125 1 NC_000913.2 conserved protein 2207125 yehP 946652 yehP Escherichia coli K12 conserved protein NP_416625.1 2205989 D 83333 CDS b2122 946654 2207122..2209122 1 NC_000913.2 predicted protein; 2209122 yehQ 946654 yehQ Escherichia coli K12 2207122 D 83333 CDS NP_416627.2 90111391 949023 2209247..2209708 1 NC_000913.2 conserved protein 2209708 yehR 949023 yehR Escherichia coli K12 conserved protein NP_416627.2 2209247 D 83333 CDS NP_416628.1 16130062 949026 complement(2209748..2210218) 1 NC_000913.2 conserved protein 2210218 yehS 949026 yehS Escherichia coli K12 conserved protein NP_416628.1 2209748 R 83333 CDS NP_416629.4 90111392 949024 complement(2210265..2210984) 1 NC_000913.2 predicted response regulator in two-component system withYehU 2210984 yehT 949024 yehT Escherichia coli K12 predicted response regulator in two-component system withYehU NP_416629.4 2210265 R 83333 CDS NP_416630.1 16130064 949027 complement(2210981..2212666) 1 NC_000913.2 putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; predicted sensory kinase in two-component system with YehT 2212666 yehU 949027 yehU Escherichia coli K12 predicted sensory kinase in two-component system with YehT NP_416630.1 2210981 R 83333 CDS NP_416631.1 16130065 949029 2212888..2213619 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator 2213619 mlrA 949029 mlrA Escherichia coli K12 DNA-binding transcriptional regulator NP_416631.1 2212888 D 83333 CDS YP_588460.1 94541117 1450279 2213679..2213786 1 NC_000913.2 predicted protein 2213786 yohO 1450279 yohO Escherichia coli K12 predicted protein YP_588460.1 2213679 D 83333 CDS NP_416632.1 16130066 949028 complement(2213767..2214498) 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 2214498 yehW 949028 yehW Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_416632.1 2213767 R 83333 CDS NP_416633.1 16130067 946659 complement(2214503..2215429) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 2215429 yehX 946659 yehX Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_416633.1 2214503 R 83333 CDS NP_416634.1 16130068 946660 complement(2215422..2216579) 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 2216579 yehY 946660 yehY Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_416634.1 2215422 R 83333 CDS NP_416635.1 16130069 946681 complement(2216586..2217503) 1 NC_000913.2 putative transport system permease protein; GO_component: periplasmic space [goid 0042597]; predicted transporter subunit: periplasmic-binding component of ABC superfamily 2217503 osmF 946681 osmF Escherichia coli K12 predicted transporter subunit: periplasmic-binding component of ABC superfamily NP_416635.1 2216586 R 83333 CDS NP_416636.1 16130070 946682 complement(2217714..2220011) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; beta-D-glucoside glucohydrolase, periplasmic 2220011 bglX 946682 bglX Escherichia coli K12 beta-D-glucoside glucohydrolase, periplasmic NP_416636.1 2217714 R 83333 CDS NP_416637.1 16130071 946653 2220207..2221922 1 NC_000913.2 D-lactate dehydrogenase, FAD protein, NADH independent; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; D-lactate dehydrogenase, FAD-binding, NADH independent 2221922 dld 946653 dld Escherichia coli K12 D-lactate dehydrogenase, FAD-binding, NADH independent NP_416637.1 2220207 D 83333 CDS NP_416638.4 162135905 946662 complement(2221960..2222892) 1 NC_000913.2 penicillin-binding protein 7; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine endopeptidase 2222892 pbpG 946662 pbpG Escherichia coli K12 D-alanyl-D-alanine endopeptidase NP_416638.4 2221960 R 83333 CDS NP_416639.2 90111394 946666 complement(2223066..2223653) 1 NC_000913.2 predicted inner membrane protein 2223653 yohC 946666 yohC Escherichia coli K12 predicted inner membrane protein NP_416639.2 2223066 R 83333 CDS NP_416640.2 90111395 946661 2223823..2224401 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 2224401 yohD 946661 yohD Escherichia coli K12 conserved inner membrane protein NP_416640.2 2223823 D 83333 CDS NP_416641.1 16130075 949126 complement(2224531..2225292) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 2225292 yohF 949126 yohF Escherichia coli K12 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_416641.1 2224531 R 83333 CDS b2139 949123 complement(join(2225345..2226631,2226631..2226780)) 1 NC_000913.2 conserved protein putative channel/filament proteins; GO_component: peptidoglycan-based cell wall [goid 0009274]; 2226780 mdtQ 949123 mdtQ Escherichia coli K12 2225345 R 83333 CDS NP_416645.1 16130078 945458 complement(2227460..2228407) 1 NC_000913.2 putative regulator protein; tRNA-dihydrouridine synthase C 2228407 dusC 945458 dusC Escherichia coli K12 tRNA-dihydrouridine synthase C NP_416645.1 2227460 R 83333 CDS NP_416646.1 16130079 949127 2228646..2229044 1 NC_000913.2 conserved inner membrane protein 2229044 yohJ 949127 yohJ Escherichia coli K12 conserved inner membrane protein NP_416646.1 2228646 D 83333 CDS NP_416647.1 16130080 949125 2229041..2229736 1 NC_000913.2 putative seritonin transporter; predicted inner membrane protein 2229736 yohK 949125 yohK Escherichia coli K12 predicted inner membrane protein NP_416647.1 2229041 D 83333 CDS NP_416648.1 16130081 946663 2229866..2230750 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; cytidine/deoxycytidine deaminase 2230750 cdd 946663 cdd Escherichia coli K12 cytidine/deoxycytidine deaminase NP_416648.1 2229866 D 83333 CDS NP_416649.1 16130082 949003 2230900..2231619 1 NC_000913.2 vancomycin sensitivity; GO_process: response to drug [goid 0042493]; predicted protein 2231619 sanA 949003 sanA Escherichia coli K12 predicted protein NP_416649.1 2230900 D 83333 CDS NP_416650.1 16130083 948983 2231622..2231861 1 NC_000913.2 predicted inner membrane protein 2231861 yeiS 948983 yeiS Escherichia coli K12 predicted inner membrane protein NP_416650.1 2231622 D 83333 CDS NP_416651.1 16130084 949049 2232055..2233293 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase 2233293 yeiT 949049 yeiT Escherichia coli K12 predicted oxidoreductase NP_416651.1 2232055 D 83333 CDS NP_416652.4 90111398 949037 2233287..2234522 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase 2234522 yeiA 949037 yeiA Escherichia coli K12 predicted oxidoreductase NP_416652.4 2233287 D 83333 CDS NP_416653.1 16130086 949039 complement(2234765..2235775) 1 NC_000913.2 methyl-galactoside transport and galactose taxis; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; methyl-galactoside transporter subunit 2235775 mglC 949039 mglC Escherichia coli K12 methyl-galactoside transporter subunit NP_416653.1 2234765 R 83333 CDS NP_416654.1 16130087 949036 complement(2235791..2237311) 1 NC_000913.2 ATP-binding component of methyl-galactoside transport and galactose taxis; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components 2237311 mglA 949036 mglA Escherichia coli K12 fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components NP_416654.1 2235791 R 83333 CDS NP_416655.1 16130088 949041 complement(2237372..2238370) 1 NC_000913.2 galactose-binding transport protein; receptor for galactose taxis; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein folding [goid 0006457]; methyl-galactoside transporter subunit 2238370 mglB 949041 mglB Escherichia coli K12 methyl-galactoside transporter subunit NP_416655.1 2237372 R 83333 CDS NP_416656.1 16130089 949043 complement(2238650..2239690) 1 NC_000913.2 mgl repressor, galactose operon inducer; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 2239690 galS 949043 galS Escherichia coli K12 DNA-binding transcriptional repressor NP_416656.1 2238650 R 83333 CDS NP_416657.1 16130090 949044 complement(2239832..2240989) 1 NC_000913.2 conserved inner membrane protein 2240989 yeiB 949044 yeiB Escherichia coli K12 conserved inner membrane protein NP_416657.1 2239832 R 83333 CDS NP_416658.1 16130091 949040 complement(2241006..2241674) 1 NC_000913.2 GO_process: folic acid biosynthetic process [goid 0046656]; GTP cyclohydrolase I 2241674 folE 949040 folE Escherichia coli K12 GTP cyclohydrolase I NP_416658.1 2241006 R 83333 CDS NP_416659.1 16130092 949045 2241932..2242768 1 NC_000913.2 putative esterase; predicted esterase 2242768 yeiG 949045 yeiG Escherichia coli K12 predicted esterase NP_416659.1 2241932 D 83333 CDS NP_416660.1 16130093 949042 complement(2242800..2244791) 1 NC_000913.2 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; ferric iron-catecholate outer membrane transporter 2244791 cirA 949042 cirA Escherichia coli K12 ferric iron-catecholate outer membrane transporter NP_416660.1 2242800 R 83333 CDS NP_416661.1 16130094 946667 complement(2245085..2246554) 1 NC_000913.2 lysine-specific permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; lysine transporter 2246554 lysP 946667 lysP Escherichia coli K12 lysine transporter NP_416661.1 2245085 R 83333 CDS NP_416662.1 16130095 946657 complement(2246759..2247640) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2247640 yeiE 946657 yeiE Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416662.1 2246759 R 83333 CDS NP_416663.1 16130096 946668 2247739..2248788 1 NC_000913.2 conserved inner membrane protein 2248788 yeiH 946668 yeiH Escherichia coli K12 conserved inner membrane protein NP_416663.1 2247739 D 83333 CDS NP_416664.1 16130097 946669 2248862..2249719 1 NC_000913.2 endonuclease IV; GO_process: DNA catabolic process [goid 0006308]; GO_process: response to radiation [goid 0009314]; endonuclease IV with intrinsic 3'-5' exonuclease activity 2249719 nfo 946669 nfo Escherichia coli K12 endonuclease IV with intrinsic 3'-5' exonuclease activity NP_416664.1 2248862 D 83333 CDS NP_416665.1 16130098 946640 2249722..2250810 1 NC_000913.2 putative kinase; predicted kinase 2250810 yeiI 946640 yeiI Escherichia coli K12 predicted kinase NP_416665.1 2249722 D 83333 CDS NP_416666.1 16130099 946655 complement(2250917..2252167) 1 NC_000913.2 putative pyrimidine nucleoside transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted nucleoside transporter 2252167 nupX 946655 nupX Escherichia coli K12 predicted nucleoside transporter NP_416666.1 2250917 R 83333 CDS NP_416667.1 16130100 946646 complement(2252267..2253208) 1 NC_000913.2 ribonucleoside hydrolase 2 2253208 rihB 946646 rihB Escherichia coli K12 ribonucleoside hydrolase 2 NP_416667.1 2252267 R 83333 CDS NP_416668.3 49176193 946670 2253377..2254036 1 NC_000913.2 stationary phase nitrogen starvation regulator; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-binding transcriptional activator of stationary phase nitrogen survival 2254036 yeiL 946670 yeiL Escherichia coli K12 DNA-binding transcriptional activator of stationary phase nitrogen survival NP_416668.3 2253377 D 83333 CDS NP_416669.1 16130102 946671 complement(2254107..2255357) 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted nucleoside transporter 2255357 yeiM 946671 yeiM Escherichia coli K12 predicted nucleoside transporter NP_416669.1 2254107 R 83333 CDS NP_416670.1 16130103 946699 complement(2255451..2256389) 1 NC_000913.2 conserved protein 2256389 yeiN 946699 yeiN Escherichia coli K12 conserved protein NP_416670.1 2255451 R 83333 CDS NP_416671.1 16130104 946664 complement(2256377..2257318) 1 NC_000913.2 putative kinase; predicted kinase 2257318 yeiC 946664 yeiC Escherichia coli K12 predicted kinase NP_416671.1 2256377 R 83333 CDS NP_416672.1 16130105 946672 complement(2257741..2259432) 1 NC_000913.2 PTS system, fructose-specific transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused fructose-specific PTS enzymes: IIBcomponent/IIC components 2259432 fruA 946672 fruA Escherichia coli K12 fused fructose-specific PTS enzymes: IIBcomponent/IIC components NP_416672.1 2257741 R 83333 CDS NP_416673.1 16130106 946676 complement(2259449..2260387) 1 NC_000913.2 GO_process: glycolysis [goid 0006096]; fructose-1-phosphate kinase 2260387 fruK 946676 fruK Escherichia coli K12 fructose-1-phosphate kinase NP_416673.1 2259449 R 83333 CDS NP_416674.1 16130107 946677 complement(2260387..2261517) 1 NC_000913.2 PTS system, fructose-specific IIA/fpr component; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused fructose-specific PTS enzymes: IIA component/HPr component 2261517 fruB 946677 fruB Escherichia coli K12 fused fructose-specific PTS enzymes: IIA component/HPr component NP_416674.1 2260387 R 83333 CDS NP_416675.1 16130108 946673 2261885..2263066 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; lactose/glucose efflux system 2263066 setB 946673 setB Escherichia coli K12 lactose/glucose efflux system NP_416675.1 2261885 D 83333 CDS YP_588461.1 94541118 4056031 complement(2263063..2263317) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; conserved protein 2263317 yeiW 4056031 yeiW Escherichia coli K12 conserved protein YP_588461.1 2263063 R 83333 CDS NP_416676.4 90111399 946674 2263472..2264044 1 NC_000913.2 putative elongation factor; GO_process: translation [goid 0006412]; predicted elongtion factor 2264044 yeiP 946674 yeiP Escherichia coli K12 predicted elongtion factor NP_416676.4 2263472 D 83333 CDS NP_416677.1 16130110 946688 2264267..2265733 1 NC_000913.2 putative oxidoreductase; predicted dehydrogenase, NAD-dependent 2265733 yeiQ 946688 yeiQ Escherichia coli K12 predicted dehydrogenase, NAD-dependent NP_416677.1 2264267 D 83333 CDS NP_416678.1 16130111 946701 2265851..2266837 1 NC_000913.2 predicted enzyme 2266837 yeiR 946701 yeiR Escherichia coli K12 predicted enzyme NP_416678.1 2265851 D 83333 CDS NP_416679.4 90111400 946693 2266876..2267589 1 NC_000913.2 undecaprenyl pyrophosphate phosphatase 2267589 yeiU 946693 yeiU Escherichia coli K12 undecaprenyl pyrophosphate phosphatase NP_416679.4 2266876 D 83333 CDS NP_416680.1 16130113 946686 2268001..2268567 1 NC_000913.2 putative lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted peptidase, outer membrane lipoprotein 2268567 spr 946686 spr Escherichia coli K12 predicted peptidase, outer membrane lipoprotein NP_416680.1 2268001 D 83333 CDS NP_416681.1 16130114 946695 2268748..2270304 1 NC_000913.2 conserved protein 2270304 rtn 946695 rtn Escherichia coli K12 conserved protein NP_416681.1 2268748 D 83333 CDS NP_416682.4 90111401 946675 2270386..2272200 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; predicted oligopeptide transporter subunit 2272200 yejA 946675 yejA Escherichia coli K12 predicted oligopeptide transporter subunit NP_416682.4 2270386 D 83333 CDS NP_416683.1 16130116 946679 2272201..2273295 1 NC_000913.2 putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted oligopeptide transporter subunit 2273295 yejB 946679 yejB Escherichia coli K12 predicted oligopeptide transporter subunit NP_416683.1 2272201 D 83333 CDS NP_416684.1 16130117 946683 2273295..2274320 1 NC_000913.2 putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted oligopeptide transporter subunit 2274320 yejE 946683 yejE Escherichia coli K12 predicted oligopeptide transporter subunit NP_416684.1 2273295 D 83333 CDS NP_416685.1 16130118 946689 2274322..2275911 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components 2275911 yejF 946689 yejF Escherichia coli K12 fused predicted oligopeptide transporter subunits of ABC superfamilly: ATP-binding components NP_416685.1 2274322 D 83333 CDS NP_416686.1 16130119 945319 complement(2275915..2276259) 1 NC_000913.2 predicted protein 2276259 yejG 945319 yejG Escherichia coli K12 predicted protein NP_416686.1 2275915 R 83333 CDS NP_416687.1 16130120 944808 complement(2276592..2277782) 1 NC_000913.2 bicyclomycin resistance protein; transmembrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; bicyclomycin/multidrug efflux system 2277782 bcr 944808 bcr Escherichia coli K12 bicyclomycin/multidrug efflux system NP_416687.1 2276592 R 83333 CDS NP_416688.1 16130121 945378 complement(2277810..2278505) 1 NC_000913.2 16S pseudouridylate 516 synthase; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 16S rRNA pseudouridylate 516 synthase 2278505 rsuA 945378 rsuA Escherichia coli K12 16S rRNA pseudouridylate 516 synthase NP_416688.1 2277810 R 83333 CDS NP_416689.1 16130122 945529 2278654..2280414 1 NC_000913.2 putative ATP-dependent helicase; predicted ATP-dependet helicase 2280414 yejH 945529 yejH Escherichia coli K12 predicted ATP-dependet helicase NP_416689.1 2278654 D 83333 CDS NP_416690.1 16130123 945618 2280539..2280823 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L25 2280823 rplY 945618 rplY Escherichia coli K12 50S ribosomal subunit protein L25 NP_416690.1 2280539 D 83333 CDS NP_416691.1 16130124 946690 complement(2280962..2281969) 1 NC_000913.2 protein present in spermidine nucleoids; GO_component: cytoplasm [goid 0005737]; nucleotide associated protein 2281969 yejK 946690 yejK Escherichia coli K12 nucleotide associated protein NP_416691.1 2280962 R 83333 CDS NP_416692.1 16130125 946694 2282151..2282378 1 NC_000913.2 conserved protein 2282378 yejL 946694 yejL Escherichia coli K12 conserved protein NP_416692.1 2282151 D 83333 CDS NP_416693.1 16130126 946685 2282398..2284158 1 NC_000913.2 putative sulfatase; predicted hydrolase, inner membrane 2284158 yejM 946685 yejM Escherichia coli K12 predicted hydrolase, inner membrane NP_416693.1 2282398 D 83333 CDS b2190 946867 complement(join(2284412..2286936,2288136..2288202)) 1 NC_000913.2 predicted autotransporter outer membrane protein;putative transport; Not classified putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 2288202 yejO 946867 yejO Escherichia coli K12 2284412 R 83333 CDS NP_416696.1 16130129 949121 complement(2287087..2288103) 1 NC_000913.2 IS5 transposase and trans-activator 2288103 insH 949121 insH Escherichia coli K12 IS5 transposase and trans-activator NP_416696.1 2287087 R 83333 CDS NP_416697.1 16130130 949081 2288522..2289169 1 NC_000913.2 nitrate/nitrite response regulator (sensor NarQ); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with NarQ or NarX 2289169 narP 949081 narP Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with NarQ or NarX NP_416697.1 2288522 D 83333 CDS NP_416698.1 16130131 946623 complement(2289380..2290432) 1 NC_000913.2 possible subunit of heme lyase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase, CcmH subunit 2290432 ccmH 946623 ccmH Escherichia coli K12 heme lyase, CcmH subunit NP_416698.1 2289380 R 83333 CDS NP_416699.1 16130132 949073 complement(2290429..2290986) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; periplasmic thioredoxin of cytochrome c-type biogenesis 2290986 ccmG 949073 ccmG Escherichia coli K12 periplasmic thioredoxin of cytochrome c-type biogenesis NP_416699.1 2290429 R 83333 CDS NP_416700.1 16130133 948783 complement(2290983..2292926) 1 NC_000913.2 cytochrome c-type biogenesis protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; heme lyase, CcmF subunit 2292926 ccmF 948783 ccmF Escherichia coli K12 heme lyase, CcmF subunit NP_416700.1 2290983 R 83333 CDS NP_416701.1 16130134 946697 complement(2292923..2293402) 1 NC_000913.2 cytochrome c biogenesis, possible subunit of a heme lyase; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; periplasmic heme chaperone 2293402 ccmE 946697 ccmE Escherichia coli K12 periplasmic heme chaperone NP_416701.1 2292923 R 83333 CDS NP_416702.1 16130135 946709 complement(2293399..2293608) 1 NC_000913.2 heme exporter protein C; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; cytochrome c biogenesis protein 2293608 ccmD 946709 ccmD Escherichia coli K12 cytochrome c biogenesis protein NP_416702.1 2293399 R 83333 CDS NP_416703.1 16130136 946703 complement(2293605..2294342) 1 NC_000913.2 heme exporter protein C; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme exporter subunit 2294342 ccmC 946703 ccmC Escherichia coli K12 heme exporter subunit NP_416703.1 2293605 R 83333 CDS NP_416704.1 16130137 946692 complement(2294384..2295046) 1 NC_000913.2 heme exporter protein B, cytochrome c-type biogenesis protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme exporter subunit 2295046 ccmB 946692 ccmB Escherichia coli K12 heme exporter subunit NP_416704.1 2294384 R 83333 CDS NP_416705.2 90111402 946714 complement(2295043..2295666) 1 NC_000913.2 ATP binding protein of heme exporter A; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme exporter subunit 2295666 ccmA 946714 ccmA Escherichia coli K12 heme exporter subunit NP_416705.2 2295043 R 83333 CDS NP_416706.1 16130139 946706 complement(2295679..2296281) 1 NC_000913.2 cytochrome c-type protein; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrate reductase, cytochrome c-type, periplasmic 2296281 napC 946706 napC Escherichia coli K12 nitrate reductase, cytochrome c-type, periplasmic NP_416706.1 2295679 R 83333 CDS NP_416707.4 90111403 946698 complement(2296291..2296740) 1 NC_000913.2 cytochrome c-type protein; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrate reductase, small, cytochrome C550 subunit, periplasmic 2296740 napB 946698 napB Escherichia coli K12 nitrate reductase, small, cytochrome C550 subunit, periplasmic NP_416707.4 2296291 R 83333 CDS NP_416708.1 16130141 945984 complement(2296737..2297600) 1 NC_000913.2 ferredoxin-type protein: electron transfer; GO_function: electron carrier activity [goid 0009055]; GO_process: anaerobic respiration [goid 0009061]; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) 2297600 napH 945984 napH Escherichia coli K12 ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) NP_416708.1 2296737 R 83333 CDS NP_416709.1 16130142 945544 complement(2297587..2298282) 1 NC_000913.2 ferredoxin-type protein: electron transfer; GO_function: electron carrier activity [goid 0009055]; GO_process: anaerobic respiration [goid 0009061]; ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) 2298282 napG 945544 napG Escherichia coli K12 ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) NP_416709.1 2297587 R 83333 CDS NP_416710.1 16130143 947093 complement(2298289..2300775) 1 NC_000913.2 probable nitrate reductase 3; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; nitrate reductase, periplasmic, large subunit 2300775 napA 947093 napA Escherichia coli K12 nitrate reductase, periplasmic, large subunit NP_416710.1 2298289 R 83333 CDS NP_416711.1 16130144 945187 complement(2300772..2301035) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; assembly protein for periplasmic nitrate reductase 2301035 napD 945187 napD Escherichia coli K12 assembly protein for periplasmic nitrate reductase NP_416711.1 2300772 R 83333 CDS NP_416712.1 16130145 946813 complement(2301025..2301519) 1 NC_000913.2 ferredoxin-type protein: electron transfer; GO_function: electron carrier activity [goid 0009055]; GO_process: anaerobic respiration [goid 0009061]; ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) 2301519 napF 946813 napF Escherichia coli K12 ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) NP_416712.1 2301025 R 83333 CDS YP_001165322.1 145698284 5061514 2301628..2301792 1 NC_000913.2 hypothetical protein 2301792 yojO 5061514 yojO Escherichia coli K12 hypothetical protein YP_001165322.1 2301628 D 83333 CDS NP_416713.1 16130146 946700 2301927..2302415 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; ecotin, a serine protease inhibitor 2302415 eco 946700 eco Escherichia coli K12 ecotin, a serine protease inhibitor NP_416713.1 2301927 D 83333 CDS NP_416714.1 16130147 946702 complement(2303130..2304776) 1 NC_000913.2 GO_process: tricarboxylic acid cycle [goid 0006099]; malate dehydrogenase, FAD/NAD(P)-binding domain 2304776 mqo 946702 mqo Escherichia coli K12 malate dehydrogenase, FAD/NAD(P)-binding domain NP_416714.1 2303130 R 83333 CDS NP_416715.1 16130148 946705 complement(2304994..2306637) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused predicted multidrug transport subunits of ABC superfamily: membrane component/ATP-binding component 2306637 yojI 946705 yojI Escherichia coli K12 fused predicted multidrug transport subunits of ABC superfamily: membrane component/ATP-binding component NP_416715.1 2304994 R 83333 CDS NP_416716.1 16130149 946708 complement(2306713..2307363) 1 NC_000913.2 DNA repair system specific for alkylated DNA; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions 2307363 alkB 946708 alkB Escherichia coli K12 oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions NP_416716.1 2306713 R 83333 CDS NP_416717.1 16130150 946710 complement(2307363..2308427) 1 NC_000913.2 O6-methylguanine-DNA methyltransferase; transcription activator/repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: DNA repair [goid 0006281]; GO_process: transcription [goid 0006350]; fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase 2308427 ada 946710 ada Escherichia coli K12 fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase NP_416717.1 2307363 R 83333 CDS NP_416718.1 16130151 946711 complement(2308501..2309556) 1 NC_000913.2 GO_process: thiamin biosynthetic process [goid 0009228]; predicted thiamine biosynthesis lipoprotein 2309556 apbE 946711 apbE Escherichia coli K12 predicted thiamine biosynthesis lipoprotein NP_416718.1 2308501 R 83333 CDS NP_416719.1 16130152 946716 complement(2309668..2310771) 1 NC_000913.2 outer membrane protein 1b (Ib;c); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane porin protein C 2310771 ompC 946716 ompC Escherichia coli K12 outer membrane porin protein C NP_416719.1 2309668 R 83333 CDS NP_416720.1 16130153 946717 2311510..2314182 1 NC_000913.2 putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; phosphotransfer intermediate protein in two-component regulatory system with RcsBC 2314182 rcsD 946717 rcsD Escherichia coli K12 phosphotransfer intermediate protein in two-component regulatory system with RcsBC NP_416720.1 2311510 D 83333 CDS NP_416721.1 16130154 947441 2314199..2314849 1 NC_000913.2 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with RcsC and YojN 2314849 rcsB 947441 rcsB Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with RcsC and YojN NP_416721.1 2314199 D 83333 CDS NP_416722.2 145698285 948993 complement(2315049..2317898) 1 NC_000913.2 sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: colanic acid biosynthetic process [goid 0009242]; GO_process: protein modification [goid 0006464]; hybrid sensory kinase in two-component regulatory system with RcsB and YojN 2317898 rcsC 948993 rcsC Escherichia coli K12 hybrid sensory kinase in two-component regulatory system with RcsB and YojN NP_416722.2 2315049 R 83333 CDS NP_416723.1 16130156 949011 2318065..2319891 1 NC_000913.2 sensor protein AtoS for response regulator AtoC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with AtoC 2319891 atoS 949011 atoS Escherichia coli K12 sensory histidine kinase in two-component regulatory system with AtoC NP_416723.1 2318065 D 83333 CDS NP_416724.1 16130157 947444 2319888..2321273 1 NC_000913.2 response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fatty acid oxidation [goid 0019395]; GO_process: polyamine biosynthetic process [goid 0006596]; GO_process: transcription [goid 0006350]; fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein 2321273 atoC 947444 atoC Escherichia coli K12 fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein NP_416724.1 2319888 D 83333 CDS NP_416725.1 16130158 947525 2321469..2322131 1 NC_000913.2 acetyl-CoA:acetoacetyl-CoA transferase alpha subunit; GO_process: fatty acid oxidation [goid 0019395]; acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit 2322131 atoD 947525 atoD Escherichia coli K12 acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit NP_416725.1 2321469 D 83333 CDS NP_416726.1 16130159 946719 2322131..2322781 1 NC_000913.2 acetyl-CoA:acetoacetyl-CoA transferase beta subunit; GO_process: fatty acid oxidation [goid 0019395]; acetyl-CoA:acetoacetyl-CoA transferase, beta subunit 2322781 atoA 946719 atoA Escherichia coli K12 acetyl-CoA:acetoacetyl-CoA transferase, beta subunit NP_416726.1 2322131 D 83333 CDS NP_416727.1 16130160 946721 2322778..2324100 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fatty acid oxidation [goid 0019395]; short chain fatty acid transporter 2324100 atoE 946721 atoE Escherichia coli K12 short chain fatty acid transporter NP_416727.1 2322778 D 83333 CDS NP_416728.1 16130161 946727 2324131..2325315 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; acetyl-CoA acetyltransferase 2325315 atoB 946727 atoB Escherichia coli K12 acetyl-CoA acetyltransferase NP_416728.1 2324131 D 83333 CDS NP_416729.1 16130162 946728 complement(2325389..2326165) 1 NC_000913.2 conserved protein 2326165 yfaP 946728 yfaP Escherichia coli K12 conserved protein NP_416729.1 2325389 R 83333 CDS NP_416730.1 16130163 946730 complement(2326170..2327819) 1 NC_000913.2 predicted protein 2327819 yfaQ 946730 yfaQ Escherichia coli K12 predicted protein NP_416730.1 2326170 R 83333 CDS b4500 1450231 complement(2327820..2332424) 1 NC_000913.2 hypothetical protein putative membrane protein; 2332424 yfaS 1450231 yfaS Escherichia coli K12 2327820 R 83333 CDS NP_416732.4 90111404 946622 complement(2332358..2332981) 1 NC_000913.2 predicted protein 2332981 yfaT 946622 yfaT Escherichia coli K12 predicted protein NP_416732.4 2332358 R 83333 CDS NP_416733.4 90111405 946618 complement(2332978..2334666) 1 NC_000913.2 predicted protein 2334666 yfaA 946618 yfaA Escherichia coli K12 predicted protein NP_416733.4 2332978 R 83333 CDS NP_416734.1 16130166 946614 complement(2334815..2337442) 1 NC_000913.2 DNA gyrase, subunit A, type II topoisomerase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA gyrase (type II topoisomerase), subunit A 2337442 gyrA 946614 gyrA Escherichia coli K12 DNA gyrase (type II topoisomerase), subunit A NP_416734.1 2334815 R 83333 CDS NP_416735.1 16130167 946607 2337589..2338311 1 NC_000913.2 3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase 2338311 ubiG 946607 ubiG Escherichia coli K12 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase NP_416735.1 2337589 D 83333 CDS NP_416736.1 16130168 946595 complement(2338439..2342191) 1 NC_000913.2 putative ATP-binding component of a transport system; adhesin 2342191 yfaL 946595 yfaL Escherichia coli K12 adhesin NP_416736.1 2338439 R 83333 CDS YP_001165323.1 145698286 5061511 complement(2342616..2342759) 1 NC_000913.2 hypothetical protein 2342759 ypaB 5061511 ypaB Escherichia coli K12 hypothetical protein YP_001165323.1 2342616 R 83333 CDS NP_416737.1 16130169 946612 2342887..2345172 1 NC_000913.2 ribonucleoside diphosphate reductase 1, alpha subunit, B1; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside diphosphate reductase 1, alpha subunit 2345172 nrdA 946612 nrdA Escherichia coli K12 ribonucleoside diphosphate reductase 1, alpha subunit NP_416737.1 2342887 D 83333 CDS NP_416738.1 16130170 946732 2345406..2346536 1 NC_000913.2 ribonucleoside-diphosphate reductase 1, beta subunit, B2; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein 2346536 nrdB 946732 nrdB Escherichia coli K12 ribonucleoside diphosphate reductase 1, beta subunit, ferritin-like protein NP_416738.1 2345406 D 83333 CDS NP_416739.1 16130171 946729 2346536..2346790 1 NC_000913.2 predicted 2Fe-2S cluster-containing protein 2346790 yfaE 946729 yfaE Escherichia coli K12 predicted 2Fe-2S cluster-containing protein NP_416739.1 2346536 D 83333 CDS NP_416740.1 16130172 946731 complement(2346844..2347494) 1 NC_000913.2 pH-inducible protein involved in stress response; conserved protein 2347494 inaA 946731 inaA Escherichia coli K12 conserved protein NP_416740.1 2346844 R 83333 CDS b2238 946718 2347673..2347915 1 NC_000913.2 pseudogene; 2347915 yfaH 946718 yfaH Escherichia coli K12 2347673 D 83333 CDS NP_416742.1 16130174 946725 complement(2347957..2349033) 1 NC_000913.2 glycerophosphodiester phosphodiesterase, periplasmic; GO_component: periplasmic space [goid 0042597]; GO_process: glycerol metabolic process [goid 0006071]; periplasmic glycerophosphodiester phosphodiesterase 2349033 glpQ 946725 glpQ Escherichia coli K12 periplasmic glycerophosphodiester phosphodiesterase NP_416742.1 2347957 R 83333 CDS NP_416743.1 16130175 946704 complement(2349038..2350396) 1 NC_000913.2 sn-glycerol-3-phosphate permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate transporter 2350396 glpT 946704 glpT Escherichia coli K12 sn-glycerol-3-phosphate transporter NP_416743.1 2349038 R 83333 CDS NP_416744.1 16130176 946713 2350669..2352297 1 NC_000913.2 sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding 2352297 glpA 946713 glpA Escherichia coli K12 sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit, FAD/NAD(P)-binding NP_416744.1 2350669 D 83333 CDS NP_416745.1 16130177 946733 2352287..2353546 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit 2353546 glpB 946733 glpB Escherichia coli K12 sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit NP_416745.1 2352287 D 83333 CDS NP_416746.1 16130178 946735 2353543..2354733 1 NC_000913.2 sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit 2354733 glpC 946735 glpC Escherichia coli K12 sn-glycerol-3-phosphate dehydrogenase (anaerobic), small subunit NP_416746.1 2353543 D 83333 CDS NP_416747.1 16130179 946737 2354926..2355825 1 NC_000913.2 conserved protein 2355825 yfaD 946737 yfaD Escherichia coli K12 conserved protein NP_416747.1 2354926 D 83333 CDS YP_001165324.1 145698287 1450280 2355838..2356023 1 NC_000913.2 predicted protein 2356023 ypaA 1450280 ypaA Escherichia coli K12 predicted protein YP_001165324.1 2355838 D 83333 CDS NP_416748.1 16130180 948054 complement(2356064..2356867) 1 NC_000913.2 predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 2356867 yfaU 948054 yfaU Escherichia coli K12 predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase NP_416748.1 2356064 R 83333 CDS NP_416749.4 90111406 945796 complement(2356885..2358174) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2358174 yfaV 945796 yfaV Escherichia coli K12 predicted transporter NP_416749.4 2356885 R 83333 CDS NP_416750.1 16130182 945881 complement(2358231..2359448) 1 NC_000913.2 putative racemase; predicted enolase 2359448 yfaW 945881 yfaW Escherichia coli K12 predicted enolase NP_416750.1 2358231 R 83333 CDS NP_416751.1 16130183 944752 complement(2359451..2360233) 1 NC_000913.2 putative regulator; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 2360233 yfaX 944752 yfaX Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416751.1 2359451 R 83333 CDS NP_416752.1 16130184 945478 complement(2360453..2361655) 1 NC_000913.2 conserved protein 2361655 yfaY 945478 yfaY Escherichia coli K12 conserved protein NP_416752.1 2360453 R 83333 CDS NP_416753.4 90111407 946739 complement(2361755..2362297) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane porin protein 2362297 yfaZ 946739 yfaZ Escherichia coli K12 predicted outer membrane porin protein NP_416753.4 2361755 R 83333 CDS NP_416754.1 16130186 946740 2362576..2363001 1 NC_000913.2 predicted NUDIX hydrolase 2363001 nudI 946740 nudI Escherichia coli K12 predicted NUDIX hydrolase NP_416754.1 2362576 D 83333 CDS NP_416755.1 16130187 944945 complement(2363040..2363642) 1 NC_000913.2 protein induced by aluminum; conserved protein 2363642 ais 944945 ais Escherichia coli K12 conserved protein NP_416755.1 2363040 R 83333 CDS NP_416756.5 145698288 947375 2363950..2365089 1 NC_000913.2 putative enzyme; uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent 2365089 arnB 947375 arnB Escherichia coli K12 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent NP_416756.5 2363950 D 83333 CDS NP_416757.1 16130189 945275 2365093..2366061 1 NC_000913.2 putative sugar transferase; undecaprenyl phosphate-L-Ara4FN transferase 2366061 arnC 945275 arnC Escherichia coli K12 undecaprenyl phosphate-L-Ara4FN transferase NP_416757.1 2365093 D 83333 CDS NP_416758.1 16130190 947683 2366061..2368043 1 NC_000913.2 putative transformylase; fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase 2368043 arnA 947683 arnA Escherichia coli K12 fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase NP_416758.1 2366061 D 83333 CDS NP_416759.1 16130191 945334 2368040..2368930 1 NC_000913.2 conserved protein 2368930 yfbH 945334 yfbH Escherichia coli K12 conserved protein NP_416759.1 2368040 D 83333 CDS NP_416760.1 16130192 947297 2368930..2370582 1 NC_000913.2 4-amino-4-deoxy-L-arabinose transferase (lipid A modification); GO_process: response to stress [goid 0006950]; 4-amino-4-deoxy-L-arabinose transferase 2370582 arnT 947297 arnT Escherichia coli K12 4-amino-4-deoxy-L-arabinose transferase NP_416760.1 2368930 D 83333 CDS YP_588462.1 94541119 1450282 2370579..2370914 1 NC_000913.2 GO_component: integral to membrane [goid 0016021]; conserved protein 2370914 yfbW 1450282 yfbW Escherichia coli K12 conserved protein YP_588462.1 2370579 D 83333 CDS NP_416761.4 90111409 945344 2370914..2371300 1 NC_000913.2 putative transport/receptor protein; predicted inner membrane protein 2371300 yfbJ 945344 yfbJ Escherichia coli K12 predicted inner membrane protein NP_416761.4 2370914 D 83333 CDS NP_416762.2 90111410 945130 complement(2371294..2371560) 1 NC_000913.2 GO_process: response to drug [goid 0042493]; polymyxin resistance protein B 2371560 pmrD 945130 pmrD Escherichia coli K12 polymyxin resistance protein B NP_416762.2 2371294 R 83333 CDS NP_416763.1 16130195 946741 complement(2371670..2373025) 1 NC_000913.2 GO_process: anaerobic respiration [goid 0009061]; o-succinylbenzoate-CoA ligase 2373025 menE 946741 menE Escherichia coli K12 o-succinylbenzoate-CoA ligase NP_416763.1 2371670 R 83333 CDS NP_416764.1 16130196 946734 complement(2373022..2373984) 1 NC_000913.2 o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA; GO_process: anaerobic respiration [goid 0009061]; o-succinylbenzoyl-CoA synthase 2373984 menC 946734 menC Escherichia coli K12 o-succinylbenzoyl-CoA synthase NP_416764.1 2373022 R 83333 CDS NP_416765.1 16130197 946747 complement(2373984..2374841) 1 NC_000913.2 dihydroxynaphtoic acid synthetase; GO_process: anaerobic respiration [goid 0009061]; dihydroxynaphthoic acid synthetase 2374841 menB 946747 menB Escherichia coli K12 dihydroxynaphthoic acid synthetase NP_416765.1 2373984 R 83333 CDS NP_416766.1 16130198 946736 complement(2374856..2375614) 1 NC_000913.2 putative enzyme; predicted peptidase 2375614 yfbB 946736 yfbB Escherichia coli K12 predicted peptidase NP_416766.1 2374856 R 83333 CDS NP_416767.1 16130199 946720 complement(2375611..2377281) 1 NC_000913.2 2-oxoglutarate decarboxylase; SHCHC synthase; GO_process: anaerobic respiration [goid 0009061]; bifunctional 2-oxoglutarate decarboxylase/ SHCHC synthase 2377281 menD 946720 menD Escherichia coli K12 bifunctional 2-oxoglutarate decarboxylase/ SHCHC synthase NP_416767.1 2375611 R 83333 CDS NP_416768.4 90111411 946712 complement(2377370..2378665) 1 NC_000913.2 isochorismate hydroxymutase 2, menaquinone biosynthesis; GO_process: anaerobic respiration [goid 0009061]; isochorismate synthase 2 2378665 menF 946712 menF Escherichia coli K12 isochorismate synthase 2 NP_416768.4 2377370 R 83333 CDS NP_416769.1 16130201 946751 complement(2378744..2379049) 1 NC_000913.2 conserved protein 2379049 elaB 946751 elaB Escherichia coli K12 conserved protein NP_416769.1 2378744 R 83333 CDS NP_416770.1 16130202 946750 complement(2379104..2379565) 1 NC_000913.2 predicted acyltransferase with acyl-CoA N-acyltransferase domain 2379565 elaA 946750 elaA Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_416770.1 2379104 R 83333 CDS NP_416771.4 90111412 946760 2379630..2380547 1 NC_000913.2 binuclear zinc phosphodiesterase 2380547 rbn 946760 rbn Escherichia coli K12 binuclear zinc phosphodiesterase NP_416771.4 2379630 D 83333 CDS NP_416772.1 16130204 946742 2380735..2381946 1 NC_000913.2 putative sulfatase / phosphatase; predicted enzyme 2381946 elaD 946742 elaD Escherichia coli K12 predicted enzyme NP_416772.1 2380735 D 83333 CDS NP_416773.1 16130205 946743 complement(2382017..2383744) 1 NC_000913.2 conserved protein 2383744 yfbK 946743 yfbK Escherichia coli K12 conserved protein NP_416773.1 2382017 R 83333 CDS NP_416774.2 90111413 945832 2383882..2384853 1 NC_000913.2 putative aminopeptidase; predicted peptidase 2384853 yfbL 945832 yfbL Escherichia coli K12 predicted peptidase NP_416774.2 2383882 D 83333 CDS NP_416775.1 16130207 946745 2384956..2385459 1 NC_000913.2 predicted protein 2385459 yfbM 946745 yfbM Escherichia coli K12 predicted protein NP_416775.1 2384956 D 83333 CDS NP_416776.1 16130208 946748 complement(2385732..2386448) 1 NC_000913.2 predicted protein 2386448 yfbN 946748 yfbN Escherichia coli K12 predicted protein NP_416776.1 2385732 R 83333 CDS NP_416777.1 16130209 946752 2386603..2387079 1 NC_000913.2 predicted protein 2387079 yfbO 946752 yfbO Escherichia coli K12 predicted protein NP_416777.1 2386603 D 83333 CDS NP_416778.1 16130210 946754 2387135..2387986 1 NC_000913.2 predicted protein 2387986 yfbP 946754 yfbP Escherichia coli K12 predicted protein NP_416778.1 2387135 D 83333 CDS NP_416779.2 145698289 945136 complement(2388070..2389527) 1 NC_000913.2 NADH dehydrogenase I chain N; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit N 2389527 nuoN 945136 nuoN Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit N NP_416779.2 2388070 R 83333 CDS NP_416780.1 16130212 947731 complement(2389534..2391063) 1 NC_000913.2 NADH dehydrogenase I chain M; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit M 2391063 nuoM 947731 nuoM Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit M NP_416780.1 2389534 R 83333 CDS NP_416781.1 16130213 945540 complement(2391227..2393068) 1 NC_000913.2 NADH dehydrogenase I chain L; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit L 2393068 nuoL 945540 nuoL Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit L NP_416781.1 2391227 R 83333 CDS NP_416782.1 16130214 947580 complement(2393065..2393367) 1 NC_000913.2 NADH dehydrogenase I chain K; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit K 2393367 nuoK 947580 nuoK Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit K NP_416782.1 2393065 R 83333 CDS NP_416783.1 16130215 946756 complement(2393364..2393918) 1 NC_000913.2 NADH dehydrogenase I chain J; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit J 2393918 nuoJ 946756 nuoJ Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit J NP_416783.1 2393364 R 83333 CDS NP_416784.1 16130216 946757 complement(2393930..2394472) 1 NC_000913.2 NADH dehydrogenase I chain I; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain I 2394472 nuoI 946757 nuoI Escherichia coli K12 NADH:ubiquinone oxidoreductase, chain I NP_416784.1 2393930 R 83333 CDS NP_416785.1 16130217 946761 complement(2394487..2395464) 1 NC_000913.2 NADH dehydrogenase I chain H; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit H 2395464 nuoH 946761 nuoH Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit H NP_416785.1 2394487 R 83333 CDS NP_416786.4 145698290 946762 complement(2395461..2398187) 1 NC_000913.2 NADH dehydrogenase I chain G; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain G 2398187 nuoG 946762 nuoG Escherichia coli K12 NADH:ubiquinone oxidoreductase, chain G NP_416786.4 2395461 R 83333 CDS NP_416787.1 16130219 946753 complement(2398240..2399577) 1 NC_000913.2 NADH dehydrogenase I chain F; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain F 2399577 nuoF 946753 nuoF Escherichia coli K12 NADH:ubiquinone oxidoreductase, chain F NP_416787.1 2398240 R 83333 CDS NP_416788.1 16130220 946746 complement(2399574..2400074) 1 NC_000913.2 NADH dehydrogenase I chain E; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain E 2400074 nuoE 946746 nuoE Escherichia coli K12 NADH:ubiquinone oxidoreductase, chain E NP_416788.1 2399574 R 83333 CDS NP_416789.2 145698291 946759 complement(2400077..2401867) 1 NC_000913.2 NADH dehydrogenase I chain C, D; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain C,D 2401867 nuoC 946759 nuoC Escherichia coli K12 NADH:ubiquinone oxidoreductase, chain C,D NP_416789.2 2400077 R 83333 CDS NP_416790.1 16130222 946738 complement(2401973..2402635) 1 NC_000913.2 NADH dehydrogenase I chain B; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, chain B 2402635 nuoB 946738 nuoB Escherichia coli K12 NADH:ubiquinone oxidoreductase, chain B NP_416790.1 2401973 R 83333 CDS NP_416791.3 49176207 946764 complement(2402651..2403094) 1 NC_000913.2 NADH dehydrogenase I chain A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; NADH:ubiquinone oxidoreductase, membrane subunit A 2403094 nuoA 946764 nuoA Escherichia coli K12 NADH:ubiquinone oxidoreductase, membrane subunit A NP_416791.3 2402651 R 83333 CDS NP_416792.1 16130224 946769 complement(2403725..2404663) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: aerobic respiration [goid 0009060]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes 2404663 lrhA 946769 lrhA Escherichia coli K12 DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes NP_416792.1 2403725 R 83333 CDS NP_416793.1 16130225 946772 2405583..2406800 1 NC_000913.2 putative aminotransferase; predicted aminotransferase 2406800 yfbQ 946772 yfbQ Escherichia coli K12 predicted aminotransferase NP_416793.1 2405583 D 83333 CDS NP_416794.1 16130226 946771 2406884..2407483 1 NC_000913.2 putative alpha helix protein; deoxyribonucleoside 5'-monophosphatase 2407483 yfbR 946771 yfbR Escherichia coli K12 deoxyribonucleoside 5'-monophosphatase NP_416794.1 2406884 D 83333 CDS NP_416795.1 16130227 946766 complement(2407542..2409374) 1 NC_000913.2 putative transport protein; predicted transporter 2409374 yfbS 946766 yfbS Escherichia coli K12 predicted transporter NP_416795.1 2407542 R 83333 CDS NP_416796.2 90111414 946777 complement(2409461..2410111) 1 NC_000913.2 putative phosphatase; predicted hydrolase or phosphatase 2410111 yfbT 946777 yfbT Escherichia coli K12 predicted hydrolase or phosphatase NP_416796.2 2409461 R 83333 CDS NP_416797.2 90111415 946767 complement(2410122..2410616) 1 NC_000913.2 conserved protein 2410616 yfbU 946767 yfbU Escherichia coli K12 conserved protein NP_416797.2 2410122 R 83333 CDS NP_416798.1 16130230 946774 complement(2410699..2411154) 1 NC_000913.2 conserved inner membrane protein 2411154 yfbV 946774 yfbV Escherichia coli K12 conserved inner membrane protein NP_416798.1 2410699 R 83333 CDS NP_416799.1 16130231 946775 2411492..2412694 1 NC_000913.2 acetate kinase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: pyruvate catabolic process [goid 0042867]; GO_process: acetate catabolic process [goid 0045733]; acetate kinase A and propionate kinase 2 2412694 ackA 946775 ackA Escherichia coli K12 acetate kinase A and propionate kinase 2 NP_416799.1 2411492 D 83333 CDS NP_416800.1 16130232 946778 2412769..2414913 1 NC_000913.2 phosphotransacetylase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: pyruvate catabolic process [goid 0042867]; GO_process: acetate catabolic process [goid 0045733]; phosphate acetyltransferase 2414913 pta 946778 pta Escherichia coli K12 phosphate acetyltransferase NP_416800.1 2412769 D 83333 CDS NP_416801.2 90111416 946780 2415103..2416623 1 NC_000913.2 putative S-transferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 2416623 yfcC 946780 yfcC Escherichia coli K12 predicted inner membrane protein NP_416801.2 2415103 D 83333 CDS NP_416802.1 16130234 946783 complement(2416656..2417198) 1 NC_000913.2 putative regulator; predicted NUDIX hydrolase 2417198 yfcD 946783 yfcD Escherichia coli K12 predicted NUDIX hydrolase NP_416802.1 2416656 R 83333 CDS NP_416803.3 49176208 946755 complement(2417256..2417810) 1 NC_000913.2 predicted phosphatase 2417810 yfcE 946755 yfcE Escherichia coli K12 predicted phosphatase NP_416803.3 2417256 R 83333 CDS NP_416804.1 16130236 946749 complement(2417863..2418507) 1 NC_000913.2 predicted enzyme 2418507 yfcF 946749 yfcF Escherichia coli K12 predicted enzyme NP_416804.1 2417863 R 83333 CDS NP_416805.1 16130237 946763 2418643..2419290 1 NC_000913.2 putative S-transferase; predicted glutathione S-transferase 2419290 yfcG 946763 yfcG Escherichia coli K12 predicted glutathione S-transferase NP_416805.1 2418643 D 83333 CDS NP_416806.1 16130238 946781 2419347..2419709 1 NC_000913.2 D-erythro-7,8-dihydroneopterin tri P epimerase; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase 2419709 folX 946781 folX Escherichia coli K12 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase NP_416806.1 2419347 D 83333 CDS NP_416807.1 16130239 946784 2419730..2420623 1 NC_000913.2 putative sugar nucleotide epimerase; conserved protein with NAD(P)-binding Rossmann-fold domain 2420623 yfcH 946784 yfcH Escherichia coli K12 conserved protein with NAD(P)-binding Rossmann-fold domain NP_416807.1 2419730 D 83333 CDS NP_416808.1 16130240 946787 complement(2420671..2421561) 1 NC_000913.2 conserved protein 2421561 yfcI 946787 yfcI Escherichia coli K12 conserved protein NP_416808.1 2420671 R 83333 CDS NP_416809.1 16130241 946789 complement(2421758..2422531) 1 NC_000913.2 ATP-binding component of histidine transport; GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: histidine biosynthetic process [goid 0000105]; GO_process: amino acid catabolic process [goid 0009063]; histidine/lysine/arginine/ornithine transporter subunit 2422531 hisP 946789 hisP Escherichia coli K12 histidine/lysine/arginine/ornithine transporter subunit NP_416809.1 2421758 R 83333 CDS NP_416810.1 16130242 946790 complement(2422539..2423255) 1 NC_000913.2 histidine transport, membrane protein M; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; histidine/lysine/arginine/ornithine transporter subunit 2423255 hisM 946790 hisM Escherichia coli K12 histidine/lysine/arginine/ornithine transporter subunit NP_416810.1 2422539 R 83333 CDS NP_416811.1 16130243 947235 complement(2423252..2423938) 1 NC_000913.2 histidine transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; histidine/lysine/arginine/ornithine transporter subunit 2423938 hisQ 947235 hisQ Escherichia coli K12 histidine/lysine/arginine/ornithine transporter subunit NP_416811.1 2423252 R 83333 CDS NP_416812.1 16130244 945309 complement(2424028..2424810) 1 NC_000913.2 histidine-binding periplasmic protein of high-affinity histidine transport system; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: histidine biosynthetic process [goid 0000105]; histidine/lysine/arginine/ornithine transporter subunit 2424810 hisJ 945309 hisJ Escherichia coli K12 histidine/lysine/arginine/ornithine transporter subunit NP_416812.1 2424028 R 83333 CDS NP_416813.1 16130245 949030 complement(2425031..2425813) 1 NC_000913.2 lysine-, arginine-, ornithine-binding periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_function: histidine/arginine/lysine/ornithine porter activity [goid 0015597]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: arginine biosynthetic process [goid 0006526]; lysine/arginine/ornithine transporter subunit 2425813 argT 949030 argT Escherichia coli K12 lysine/arginine/ornithine transporter subunit NP_416813.1 2425031 R 83333 CDS NP_416814.1 16130246 949033 complement(2426079..2426648) 1 NC_000913.2 GO_process: aerobic respiration [goid 0009060]; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2426648 ubiX 949033 ubiX Escherichia coli K12 3-octaprenyl-4-hydroxybenzoate carboxy-lyase NP_416814.1 2426079 R 83333 CDS NP_416815.1 16130247 946794 complement(2426743..2428260) 1 NC_000913.2 amidophosphoribosyltransferase = PRPP amidotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; amidophosphoribosyltransferase 2428260 purF 946794 purF Escherichia coli K12 amidophosphoribosyltransferase NP_416815.1 2426743 R 83333 CDS NP_416816.1 16130248 945055 complement(2428297..2428785) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane protein required for colicin V production 2428785 cvpA 945055 cvpA Escherichia coli K12 membrane protein required for colicin V production NP_416816.1 2428297 R 83333 CDS NP_416817.2 90111417 944971 complement(2429044..2429706) 1 NC_000913.2 putative lipoprotein; conserved protein 2429706 dedD 944971 dedD Escherichia coli K12 conserved protein NP_416817.2 2429044 R 83333 CDS NP_416818.1 16130250 945451 complement(2429696..2430964) 1 NC_000913.2 dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase; GO_process: folic acid biosynthetic process [goid 0046656]; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2430964 folC 945451 folC Escherichia coli K12 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase NP_416818.1 2429696 R 83333 CDS NP_416819.1 16130251 946796 complement(2431034..2431948) 1 NC_000913.2 acetylCoA carboxylase, carboxytransferase component, beta subunit; GO_component: cytoplasm [goid 0005737]; acetyl-CoA carboxylase, beta (carboxyltranferase) subunit 2431948 accD 946796 accD Escherichia coli K12 acetyl-CoA carboxylase, beta (carboxyltranferase) subunit NP_416819.1 2431034 R 83333 CDS NP_416820.1 16130252 946798 complement(2432104..2432763) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 2432763 dedA 946798 dedA Escherichia coli K12 conserved inner membrane protein NP_416820.1 2432104 R 83333 CDS NP_416821.1 16130253 946793 complement(2432846..2433658) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; pseudouridylate synthase I 2433658 truA 946793 truA Escherichia coli K12 pseudouridylate synthase I NP_416821.1 2432846 R 83333 CDS NP_416822.1 16130254 946797 complement(2433658..2434671) 1 NC_000913.2 putative PTS system enzyme II A component; predicted semialdehyde dehydrogenase 2434671 usg 946797 usg Escherichia coli K12 predicted semialdehyde dehydrogenase NP_416822.1 2433658 R 83333 CDS NP_416823.1 16130255 946785 complement(2434737..2435873) 1 NC_000913.2 erythronate-4-phosphate dehyrogenase; GO_process: pyridoxine biosynthetic process [goid 0008615]; erythronate-4-phosphate dehydrogenase 2435873 pdxB 946785 pdxB Escherichia coli K12 erythronate-4-phosphate dehydrogenase NP_416823.1 2434737 R 83333 CDS NP_416824.1 16130256 946776 2435972..2436967 1 NC_000913.2 flagellar assembly protein; predicted flagella assembly protein 2436967 flk 946776 flk Escherichia coli K12 predicted flagella assembly protein NP_416824.1 2435972 D 83333 CDS NP_416825.1 16130257 946791 complement(2436964..2438142) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2438142 yfcJ 946791 yfcJ Escherichia coli K12 predicted transporter NP_416825.1 2436964 R 83333 CDS NP_416826.1 16130258 946799 complement(2438407..2439627) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 3-oxoacyl-[acyl-carrier-protein] synthase I 2439627 fabB 946799 fabB Escherichia coli K12 3-oxoacyl-[acyl-carrier-protein] synthase I NP_416826.1 2438407 R 83333 CDS NP_416827.4 90111418 946800 2439786..2441792 1 NC_000913.2 putative peptidase; fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme 2441792 mnmC 946800 mnmC Escherichia coli K12 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase/FAD-dependent demodification enzyme NP_416827.4 2439786 D 83333 CDS NP_416828.1 16130260 946804 complement(2441913..2442191) 1 NC_000913.2 predicted protein 2442191 yfcL 946804 yfcL Escherichia coli K12 predicted protein NP_416828.1 2441913 R 83333 CDS NP_416829.1 16130261 946807 complement(2442225..2442773) 1 NC_000913.2 putative transporting ATPase; conserved protein 2442773 yfcM 946807 yfcM Escherichia coli K12 conserved protein NP_416829.1 2442225 R 83333 CDS NP_416830.1 16130262 946808 complement(2442773..2443582) 1 NC_000913.2 putative structural protein; conserved inner membrane protein 2443582 yfcA 946808 yfcA Escherichia coli K12 conserved inner membrane protein NP_416830.1 2442773 R 83333 CDS NP_416831.1 16130263 946812 complement(2443582..2444406) 1 NC_000913.2 murein DD-endopeptidase, penicillin-insensitive; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; murein DD-endopeptidase 2444406 mepA 946812 mepA Escherichia coli K12 murein DD-endopeptidase NP_416831.1 2443582 R 83333 CDS NP_416832.1 16130264 946814 complement(2444410..2445495) 1 NC_000913.2 GO_process: chorismate biosynthetic process [goid 0009423]; chorismate synthase 2445495 aroC 946814 aroC Escherichia coli K12 chorismate synthase NP_416832.1 2444410 R 83333 CDS NP_416833.4 90111419 946805 complement(2445530..2446462) 1 NC_000913.2 putative adenine-specific methylase; N5-glutamine methyltransferase 2446462 prmB 946805 prmB Escherichia coli K12 N5-glutamine methyltransferase NP_416833.4 2445530 R 83333 CDS NP_416834.1 16130266 944847 2446628..2447179 1 NC_000913.2 conserved protein 2447179 yfcN 944847 yfcN Escherichia coli K12 conserved protein NP_416834.1 2446628 D 83333 CDS NP_416835.2 90111420 946620 complement(2447250..2448071) 1 NC_000913.2 predicted protein 2448071 yfcO 946620 yfcO Escherichia coli K12 predicted protein NP_416835.2 2447250 R 83333 CDS NP_416836.1 16130268 946788 complement(2448073..2448612) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 2448612 yfcP 946788 yfcP Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416836.1 2448073 R 83333 CDS NP_416837.1 16130269 946779 complement(2448609..2449097) 1 NC_000913.2 GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 2449097 yfcQ 946779 yfcQ Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416837.1 2448609 R 83333 CDS NP_416838.1 16130270 946818 complement(2449094..2449606) 1 NC_000913.2 putative fimbrial protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 2449606 yfcR 946818 yfcR Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416838.1 2449094 R 83333 CDS NP_416839.1 16130271 946418 complement(2449606..2450358) 1 NC_000913.2 putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic pilus chaperone 2450358 yfcS 946418 yfcS Escherichia coli K12 predicted periplasmic pilus chaperone NP_416839.1 2449606 R 83333 CDS b4661 1450268 complement(2450378..2453023) 1 NC_000913.2 predicted export usher protein;putative membrane; Not classified putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 2453023 yfcU 1450268 yfcU Escherichia coli K12 2450378 R 83333 CDS NP_416841.1 16130272 949109 complement(2453105..2453668) 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 2453668 yfcV 949109 yfcV Escherichia coli K12 predicted fimbrial-like adhesin protein NP_416841.1 2453105 R 83333 CDS NP_416842.1 16130273 946815 complement(2454349..2454834) 1 NC_000913.2 GO_process: protein modification [goid 0006464]; phosphohistidine phosphatase 2454834 sixA 946815 sixA Escherichia coli K12 phosphohistidine phosphatase NP_416842.1 2454349 R 83333 CDS NP_416843.1 16130274 949097 complement(2455037..2457181) 1 NC_000913.2 putative enzyme; GO_process: fatty acid oxidation [goid 0019395]; fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase 2457181 fadJ 949097 fadJ Escherichia coli K12 fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase NP_416843.1 2455037 R 83333 CDS NP_416844.1 16130275 948823 complement(2457181..2458491) 1 NC_000913.2 putative acyltransferase; beta-ketoacyl-CoA thiolase, anaerobic, subunit 2458491 fadI 948823 fadI Escherichia coli K12 beta-ketoacyl-CoA thiolase, anaerobic, subunit NP_416844.1 2457181 R 83333 CDS NP_416845.2 90111421 948817 complement(2458672..2458956) 1 NC_000913.2 conserved protein 2458956 yfcZ 948817 yfcZ Escherichia coli K12 conserved protein NP_416845.2 2458672 R 83333 CDS NP_416846.2 145698292 946820 2459328..2460668 1 NC_000913.2 long-chain fatty acid transport protein (outer membrane flp protein); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: fatty acid oxidation [goid 0019395]; long-chain fatty acid outer membrane transporter 2460668 fadL 946820 fadL Escherichia coli K12 long-chain fatty acid outer membrane transporter NP_416846.2 2459328 D 83333 CDS NP_416847.1 16130278 946819 2461034..2462092 1 NC_000913.2 GO_process: DNA metabolic process [goid 0006259]; predicted protein 2462092 yfdF 946819 yfdF Escherichia coli K12 predicted protein NP_416847.1 2461034 D 83333 CDS NP_416848.1 16130279 945582 complement(2462274..2463029) 1 NC_000913.2 lipoprotein precursor; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted lipoprotein 2463029 vacJ 945582 vacJ Escherichia coli K12 predicted lipoprotein NP_416848.1 2462274 R 83333 CDS NP_416849.1 16130280 944801 2463323..2464255 1 NC_000913.2 putative transport protein; predicted inner membrane protein 2464255 yfdC 944801 yfdC Escherichia coli K12 predicted inner membrane protein NP_416849.1 2463323 D 83333 CDS NP_416850.1 16130281 946821 2464567..2465724 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase 2465724 intS 946821 intS Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase NP_416850.1 2464567 D 83333 CDS NP_416851.1 16130282 948821 2465877..2466239 1 NC_000913.2 CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) 2466239 yfdG 948821 yfdG Escherichia coli K12 CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase) NP_416851.1 2465877 D 83333 CDS NP_416852.1 16130283 949098 2466236..2467156 1 NC_000913.2 CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase 2467156 yfdH 949098 yfdH Escherichia coli K12 CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase NP_416852.1 2466236 D 83333 CDS NP_416853.1 16130284 946822 2467153..2468484 1 NC_000913.2 putative ligase; CPS-53 (KpLE1) prophage; predicted inner membrane protein 2468484 yfdI 946822 yfdI Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted inner membrane protein NP_416853.1 2467153 D 83333 CDS b2353 946825 2468837..2469127 1 NC_000913.2 pseudogene, CPS-53 (KpLE1) prophage; tail fiber assembly protein fragment; 2469127 tfaS 946825 tfaS Escherichia coli K12 2468837 D 83333 CDS NP_416855.1 16130286 948822 complement(2469099..2469539) 1 NC_000913.2 CPS-53 (KpLE1) prophage; conserved protein 2469539 yfdK 948822 yfdK Escherichia coli K12 CPS-53 (KpLE1) prophage; conserved protein NP_416855.1 2469099 R 83333 CDS b2355 949099 complement(2469566..2470144) 1 NC_000913.2 pseudogene, CPS-53 (KpLE1) prophage; 2470144 yfdL 949099 yfdL Escherichia coli K12 2469566 R 83333 CDS b2356 945416 complement(2470140..2470409) 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted methyltransferase; 2470409 yfdM 945416 yfdM Escherichia coli K12 2470140 R 83333 CDS NP_416858.1 16130289 946419 complement(2470409..2470903) 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted protein 2470903 yfdN 946419 yfdN Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted protein NP_416858.1 2470409 R 83333 CDS b2358 947403 complement(2470900..2471346) 1 NC_000913.2 pseudogene, CPS-53 (KpLE1) prophage; predicted defective phage replication protein O; 2471346 yfdO 947403 yfdO Escherichia coli K12 2470900 R 83333 CDS NP_416860.4 145698293 945565 2471626..2471988 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted protein 2471988 yfdP 945565 yfdP Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted protein NP_416860.4 2471626 D 83333 CDS NP_416861.1 16130292 946827 2472054..2472878 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted protein 2472878 yfdQ 946827 yfdQ Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted protein NP_416861.1 2472054 D 83333 CDS NP_416862.2 90111424 946834 2473006..2473542 1 NC_000913.2 CPS-53 (KpLE1) prophage; conserved protein 2473542 yfdR 946834 yfdR Escherichia coli K12 CPS-53 (KpLE1) prophage; conserved protein NP_416862.2 2473006 D 83333 CDS NP_416863.1 16130294 946426 2473533..2473895 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted protein 2473895 yfdS 946426 yfdS Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted protein NP_416863.1 2473533 D 83333 CDS NP_416864.1 16130295 946836 2473895..2474200 1 NC_000913.2 CPS-53 (KpLE1) prophage; predicted protein 2474200 yfdT 946836 yfdT Escherichia coli K12 CPS-53 (KpLE1) prophage; predicted protein NP_416864.1 2473895 D 83333 CDS b4545 1450283 2474116..2474256 1 NC_000913.2 predicted protein; 2474256 ypdJ 1450283 ypdJ Escherichia coli K12 2474116 D 83333 CDS YP_588463.1 94541120 1450232 2474332..2474532 1 NC_000913.2 response regulator inhibitor for tor operon 2474532 torI 1450232 torI Escherichia coli K12 response regulator inhibitor for tor operon YP_588463.1 2474332 D 83333 CDS NP_416865.1 16130296 948828 complement(2474716..2475651) 1 NC_000913.2 D-serine dehydratase (deaminase) transcriptional activator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 2475651 dsdC 948828 dsdC Escherichia coli K12 DNA-binding transcriptional dual regulator NP_416865.1 2474716 R 83333 CDS NP_416866.1 16130297 949103 2475869..2477206 1 NC_000913.2 transport system permease (serine?); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2477206 dsdX 949103 dsdX Escherichia coli K12 predicted transporter NP_416866.1 2475869 D 83333 CDS NP_416867.1 16130298 946837 2477224..2478552 1 NC_000913.2 D-serine dehydratase (deaminase); GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; D-serine ammonia-lyase 2478552 dsdA 946837 dsdA Escherichia coli K12 D-serine ammonia-lyase NP_416867.1 2477224 D 83333 CDS NP_416868.1 16130299 946835 complement(2478660..2480198) 1 NC_000913.2 multidrug resistance protein Y; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted multidrug efflux system 2480198 emrY 946835 emrY Escherichia coli K12 predicted multidrug efflux system NP_416868.1 2478660 R 83333 CDS NP_416869.1 16130300 946840 complement(2480198..2481361) 1 NC_000913.2 multidrug resistance protein K; GO_process: response to drug [goid 0042493]; EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component 2481361 emrK 946840 emrK Escherichia coli K12 EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component NP_416869.1 2480198 R 83333 CDS NP_416870.1 16130301 946841 2481777..2482391 1 NC_000913.2 putative positive transcription regulator (sensor EvgS); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with EvgS 2482391 evgA 946841 evgA Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with EvgS NP_416870.1 2481777 D 83333 CDS NP_416871.1 16130302 946844 2482396..2485989 1 NC_000913.2 putative sensor for regulator EvgA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase in two-component regulatory system with EvgA 2485989 evgS 946844 evgS Escherichia coli K12 hybrid sensory histidine kinase in two-component regulatory system with EvgA NP_416871.1 2482396 D 83333 CDS NP_416872.4 162135906 946432 complement(2486045..2487190) 1 NC_000913.2 putative enzyme; predicted CoA-transferase, NAD(P)-binding 2487190 yfdE 946432 yfdE Escherichia coli K12 predicted CoA-transferase, NAD(P)-binding NP_416872.4 2486045 R 83333 CDS NP_416873.1 16130304 949110 complement(2487264..2488208) 1 NC_000913.2 putative receptor protein; predicted transporter 2488208 yfdV 949110 yfdV Escherichia coli K12 predicted transporter NP_416873.1 2487264 R 83333 CDS NP_416874.1 16130305 946845 complement(2488278..2489972) 1 NC_000913.2 predicted oxalyl-CoA decarboxylase 2489972 oxc 946845 oxc Escherichia coli K12 predicted oxalyl-CoA decarboxylase NP_416874.1 2488278 R 83333 CDS NP_416875.1 16130306 946842 complement(2490026..2491276) 1 NC_000913.2 putative enzyme; formyl-CoA transferase, NAD(P)-binding 2491276 frc 946842 frc Escherichia coli K12 formyl-CoA transferase, NAD(P)-binding NP_416875.1 2490026 R 83333 CDS NP_416876.1 16130307 949108 complement(2491789..2492424) 1 NC_000913.2 predicted protein 2492424 yfdX 949108 yfdX Escherichia coli K12 predicted protein NP_416876.1 2491789 R 83333 CDS NP_416877.1 16130308 949107 2492720..2492995 1 NC_000913.2 predicted lipoprotein involved in colanic acid biosynthesis 2492995 ypdI 949107 ypdI Escherichia coli K12 predicted lipoprotein involved in colanic acid biosynthesis NP_416877.1 2492720 D 83333 CDS NP_416878.1 16130309 948842 complement(2493072..2493314) 1 NC_000913.2 predicted inner membrane protein 2493314 yfdY 948842 yfdY Escherichia coli K12 predicted inner membrane protein NP_416878.1 2493072 R 83333 CDS NP_416879.4 90111426 946847 2493667..2494587 1 NC_000913.2 putative heat shock protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: response to temperature stimulus [goid 0009266]; palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase 2494587 lpxP 946847 lpxP Escherichia coli K12 palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase NP_416879.4 2493667 D 83333 CDS NP_416880.1 16130311 946850 complement(2495079..2496317) 1 NC_000913.2 putative aminotransferase; prediected aminotransferase, PLP-dependent 2496317 yfdZ 946850 yfdZ Escherichia coli K12 prediected aminotransferase, PLP-dependent NP_416880.1 2495079 R 83333 CDS NP_416881.1 16130312 946723 2496693..2498390 1 NC_000913.2 putative sensor protein; predicted sensory kinase in two-component system with YpdB 2498390 ypdA 946723 ypdA Escherichia coli K12 predicted sensory kinase in two-component system with YpdB NP_416881.1 2496693 D 83333 CDS NP_416882.1 16130313 947395 2498405..2499139 1 NC_000913.2 putative 2-component transcriptional regulator; GO_process: transcription [goid 0006350]; predicted response regulator in two-component system withYpdA 2499139 ypdB 947395 ypdB Escherichia coli K12 predicted response regulator in two-component system withYpdA NP_416882.1 2498405 D 83333 CDS NP_416883.1 16130314 946856 2499152..2500009 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding protein 2500009 ypdC 946856 ypdC Escherichia coli K12 predicted DNA-binding protein NP_416883.1 2499152 D 83333 CDS NP_416884.1 16130315 946852 complement(2500012..2502507) 1 NC_000913.2 putative PTS system enzyme IIA component, enzyme I; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component 2502507 fryA 946852 fryA Escherichia coli K12 fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component NP_416884.1 2500012 R 83333 CDS NP_416885.1 16130316 946848 complement(2502532..2503569) 1 NC_000913.2 predicted peptidase 2503569 ypdE 946848 ypdE Escherichia coli K12 predicted peptidase NP_416885.1 2502532 R 83333 CDS NP_416886.1 16130317 946853 complement(2503569..2504654) 1 NC_000913.2 putative peptidase; predicted peptidase 2504654 ypdF 946853 ypdF Escherichia coli K12 predicted peptidase NP_416886.1 2503569 R 83333 CDS NP_416887.1 16130318 949111 complement(2504669..2505916) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIC component of PTS 2505916 fryC 949111 fryC Escherichia coli K12 predicted enzyme IIC component of PTS NP_416887.1 2504669 R 83333 CDS NP_416888.1 16130319 949087 complement(2505938..2506264) 1 NC_000913.2 putative PTS system enzyme IIB component; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; predicted enzyme IIB component of PTS 2506264 fryB 949087 fryB Escherichia coli K12 predicted enzyme IIB component of PTS NP_416888.1 2505938 R 83333 CDS NP_416889.1 16130320 946858 complement(2506483..2507448) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; glucokinase 2507448 glk 946858 glk Escherichia coli K12 glucokinase NP_416889.1 2506483 R 83333 CDS NP_416890.1 16130321 946854 2507652..2508908 1 NC_000913.2 predicted ion channel protein 2508908 yfeO 946854 yfeO Escherichia coli K12 predicted ion channel protein NP_416890.1 2507652 D 83333 CDS NP_416891.1 16130322 946855 2509023..2509349 1 NC_000913.2 the overlapping reading frame (b2391) is no longer thought to be an actual gene, and has been deaccessioned; conserved protein 2509349 ypeC 946855 ypeC Escherichia coli K12 conserved protein NP_416891.1 2509023 D 83333 CDS NP_416893.1 16130324 946899 complement(2509490..2510728) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: xenobiotic metabolic process [goid 0006805]; manganese/divalent cation transporter 2510728 mntH 946899 mntH Escherichia coli K12 manganese/divalent cation transporter NP_416893.1 2509490 R 83333 CDS NP_416894.1 16130325 946895 2511064..2512266 1 NC_000913.2 permease of transport system for 3 nucleosides; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; nucleoside (except guanosine) transporter 2512266 nupC 946895 nupC Escherichia coli K12 nucleoside (except guanosine) transporter NP_416894.1 2511064 D 83333 CDS NP_416895.2 90111427 946896 2512353..2513465 1 NC_000913.2 IS186/IS421 transposase 2513465 insL 946896 insL Escherichia coli K12 IS186/IS421 transposase NP_416895.2 2512353 D 83333 CDS NP_416896.4 90111428 946864 complement(2513665..2515854) 1 NC_000913.2 predicted diguanylate cyclase 2515854 yfeA 946864 yfeA Escherichia coli K12 predicted diguanylate cyclase NP_416896.4 2513665 R 83333 CDS NP_416897.2 90111429 946857 2516489..2516833 1 NC_000913.2 predicted DNA-binding transcriptional regulator 2516833 yfeC 946857 yfeC Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416897.2 2516489 D 83333 CDS NP_416898.2 145698294 946865 2516856..2517227 1 NC_000913.2 predicted DNA-binding transcriptional regulator 2517227 yfeD 946865 yfeD Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416898.2 2516856 D 83333 CDS NP_416899.1 16130330 946906 complement(2517279..2518694) 1 NC_000913.2 glutamate tRNA synthetase, catalytic subunit; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glutamyl-tRNA synthetase 2518694 gltX 946906 gltX Escherichia coli K12 glutamyl-tRNA synthetase NP_416899.1 2517279 R 83333 CDS NP_416900.1 16130331 946862 complement(2519615..2520499) 1 NC_000913.2 regulator for xapA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 2520499 xapR 946862 xapR Escherichia coli K12 DNA-binding transcriptional activator NP_416900.1 2519615 R 83333 CDS NP_416901.1 16130332 946868 complement(2520751..2522007) 1 NC_000913.2 xanthosine permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; xanthosine transporter 2522007 xapB 946868 xapB Escherichia coli K12 xanthosine transporter NP_416901.1 2520751 R 83333 CDS NP_416902.1 16130333 946878 complement(2522067..2522900) 1 NC_000913.2 xanthosine phosphorylase; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; purine nucleoside phosphorylase II 2522900 xapA 946878 xapA Escherichia coli K12 purine nucleoside phosphorylase II NP_416902.1 2522067 R 83333 CDS NP_416903.1 16130334 946872 2523149..2523913 1 NC_000913.2 putative sugar hydrolase; conserved outer membrane protein 2523913 yfeN 946872 yfeN Escherichia coli K12 conserved outer membrane protein NP_416903.1 2523149 D 83333 CDS NP_416904.1 16130335 946873 complement(2523952..2524878) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2524878 yfeR 946873 yfeR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416904.1 2523952 R 83333 CDS NP_416905.1 16130336 946874 2524968..2525966 1 NC_000913.2 putative cytochrome oxidase; predicted inner membrane protein 2525966 yfeH 946874 yfeH Escherichia coli K12 predicted inner membrane protein NP_416905.1 2524968 D 83333 CDS YP_588464.1 94541121 1450285 complement(2525963..2526181) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 2526181 ypeB 1450285 ypeB Escherichia coli K12 predicted protein YP_588464.1 2525963 R 83333 CDS NP_416906.1 16130337 946885 complement(2526183..2528198) 1 NC_000913.2 DNA ligase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; DNA ligase, NAD(+)-dependent 2528198 ligA 946885 ligA Escherichia coli K12 DNA ligase, NAD(+)-dependent NP_416906.1 2526183 R 83333 CDS NP_416907.1 16130338 946869 complement(2528269..2529255) 1 NC_000913.2 cell division protein involved in FtsZ ring; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cell division protein involved in Z ring assembly 2529255 zipA 946869 zipA Escherichia coli K12 cell division protein involved in Z ring assembly NP_416907.1 2528269 R 83333 CDS NP_416908.1 16130339 946875 2529485..2530246 1 NC_000913.2 required for sulfate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; predicted inner membrane protein 2530246 cysZ 946875 cysZ Escherichia coli K12 predicted inner membrane protein NP_416908.1 2529485 D 83333 CDS NP_416909.1 16130340 946877 2530431..2531402 1 NC_000913.2 cysteine synthase A, O-acetylserine sulfhydrolase A; GO_component: cytoplasm [goid 0005737]; GO_process: cysteine biosynthetic process [goid 0019344]; cysteine synthase A, O-acetylserine sulfhydrolase A subunit 2531402 cysK 946877 cysK Escherichia coli K12 cysteine synthase A, O-acetylserine sulfhydrolase A subunit NP_416909.1 2530431 D 83333 CDS NP_416910.1 16130341 946886 2531786..2532043 1 NC_000913.2 PTS system protein HPr; GO_process: carbohydrate catabolic process [goid 0016052]; phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) 2532043 ptsH 946886 ptsH Escherichia coli K12 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) NP_416910.1 2531786 D 83333 CDS NP_416911.1 16130342 946879 2532088..2533815 1 NC_000913.2 PEP-protein phosphotransferase system enzyme I; GO_process: carbohydrate catabolic process [goid 0016052]; PEP-protein phosphotransferase of PTS system (enzyme I) 2533815 ptsI 946879 ptsI Escherichia coli K12 PEP-protein phosphotransferase of PTS system (enzyme I) NP_416911.1 2532088 D 83333 CDS NP_416912.1 16130343 946880 2533856..2534365 1 NC_000913.2 PTS system, glucose-specific IIA component; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; glucose-specific enzyme IIA component of PTS 2534365 crr 946880 crr Escherichia coli K12 glucose-specific enzyme IIA component of PTS NP_416912.1 2533856 D 83333 CDS NP_416913.1 16130344 946881 complement(2534408..2535259) 1 NC_000913.2 pyridoxal/pyridoxine/pyridoxamine kinase; pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase 2535259 pdxK 946881 pdxK Escherichia coli K12 pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase NP_416913.1 2534408 R 83333 CDS NP_416914.1 16130345 946876 2535364..2535738 1 NC_000913.2 predicted protein 2535738 yfeK 946876 yfeK Escherichia coli K12 predicted protein NP_416914.1 2535364 D 83333 CDS NP_416915.1 16130346 946887 2535771..2536505 1 NC_000913.2 conserved protein 2536505 yfeS 946887 yfeS Escherichia coli K12 conserved protein NP_416915.1 2535771 D 83333 CDS NP_416916.1 16130347 946888 complement(2536694..2537605) 1 NC_000913.2 cysteine synthase B, O-acetylserine sulfhydrolase B; GO_process: cysteine biosynthetic process [goid 0019344]; cysteine synthase B (O-acetylserine sulfhydrolase B) 2537605 cysM 946888 cysM Escherichia coli K12 cysteine synthase B (O-acetylserine sulfhydrolase B) NP_416916.1 2536694 R 83333 CDS NP_416917.1 16130348 946889 complement(2537739..2538836) 1 NC_000913.2 ATP-binding component of sulfate permease A protein; chromate resistance; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_function: sulfate-transporting ATPase activity [goid 0015419]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: response to drug [goid 0042493]; sulfate/thiosulfate transporter subunit 2538836 cysA 946889 cysA Escherichia coli K12 sulfate/thiosulfate transporter subunit NP_416917.1 2537739 R 83333 CDS YP_026168.2 90111430 2847743 complement(2538826..2539701) 1 NC_000913.2 sulfate transport system permease W protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; sulfate/thiosulfate transporter subunit 2539701 cysW 2847743 cysW Escherichia coli K12 sulfate/thiosulfate transporter subunit YP_026168.2 2538826 R 83333 CDS NP_416919.1 16130349 946882 complement(2539701..2540534) 1 NC_000913.2 sulfate, thiosulfate transport system permease T protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; sulfate/thiosulfate transporter subunit 2540534 cysU 946882 cysU Escherichia coli K12 sulfate/thiosulfate transporter subunit NP_416919.1 2539701 R 83333 CDS NP_416920.1 16130350 946883 complement(2540534..2541550) 1 NC_000913.2 thiosulfate binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: sulfur metabolic process [goid 0006790]; thiosulfate transporter subunit 2541550 cysP 946883 cysP Escherichia coli K12 thiosulfate transporter subunit NP_416920.1 2540534 R 83333 CDS NP_416921.4 90111431 946898 complement(2541854..2542645) 1 NC_000913.2 putative oxidoreductase; predicted oxidoredutase, sulfate metabolism protein 2542645 ucpA 946898 ucpA Escherichia coli K12 predicted oxidoredutase, sulfate metabolism protein NP_416921.4 2541854 R 83333 CDS NP_416922.1 16130352 946568 complement(2542774..2543631) 1 NC_000913.2 predicted DNA-binding transcriptional regulator 2543631 yfeT 946568 yfeT Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416922.1 2542774 R 83333 CDS NP_416923.1 16130353 946893 2543795..2544691 1 NC_000913.2 putative regulator; predicted PTS component 2544691 murQ 946893 murQ Escherichia coli K12 predicted PTS component NP_416923.1 2543795 D 83333 CDS NP_416924.1 16130354 946894 2544695..2546119 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; fused predicted PTS enzymes: IIB component/IIC component 2546119 murP 946894 murP Escherichia coli K12 fused predicted PTS enzymes: IIB component/IIC component NP_416924.1 2544695 D 83333 CDS NP_416925.2 90111432 946907 2546124..2547428 1 NC_000913.2 putative beta-lactamase; GO_process: carbohydrate catabolic process [goid 0016052]; predicted periplasmic esterase 2547428 yfeW 946907 yfeW Escherichia coli K12 predicted periplasmic esterase NP_416925.2 2546124 D 83333 CDS NP_416926.4 90111433 946913 complement(2547668..2548567) 1 NC_000913.2 conserved protein 2548567 yfeX 946913 yfeX Escherichia coli K12 conserved protein NP_416926.4 2547668 R 83333 CDS NP_416927.1 16130357 946919 complement(2548663..2549238) 1 NC_000913.2 predicted protein 2549238 yfeY 946919 yfeY Escherichia coli K12 predicted protein NP_416927.1 2548663 R 83333 CDS NP_416928.4 90111434 946918 complement(2549299..2549748) 1 NC_000913.2 predicted inner membrane protein 2549748 yfeZ 946918 yfeZ Escherichia coli K12 predicted inner membrane protein NP_416928.4 2549299 R 83333 CDS NP_416929.4 90111435 946917 complement(2549735..2550160) 1 NC_000913.2 predicted acyltransferase with acyl-CoA N-acyltransferase domain 2550160 ypeA 946917 ypeA Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_416929.4 2549735 R 83333 CDS NP_416930.1 16130360 946916 2550374..2551243 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylmuramoyl-l-alanine amidase I 2551243 amiA 946916 amiA Escherichia coli K12 N-acetylmuramoyl-l-alanine amidase I NP_416930.1 2550374 D 83333 CDS NP_416931.1 16130361 946908 2551247..2552146 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; coproporphyrinogen III oxidase 2552146 hemF 946908 hemF Escherichia coli K12 coproporphyrinogen III oxidase NP_416931.1 2551247 D 83333 CDS NP_416932.1 16130362 946911 complement(2552152..2553204) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amine catabolic process [goid 0009310]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2553204 eutR 946911 eutR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_416932.1 2552152 R 83333 CDS NP_416933.4 90111436 946912 complement(2553250..2553750) 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; predicted carboxysome structural protein with predicted role in ethanolamine utilization 2553750 eutK 946912 eutK Escherichia coli K12 predicted carboxysome structural protein with predicted role in ethanolamine utilization NP_416933.4 2553250 R 83333 CDS NP_416934.1 16130364 946914 complement(2553763..2554422) 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; predicted carboxysome structural protein with predicted role in ethanolamine utilization 2554422 eutL 946914 eutL Escherichia coli K12 predicted carboxysome structural protein with predicted role in ethanolamine utilization NP_416934.1 2553763 R 83333 CDS NP_416935.1 16130365 946925 complement(2554432..2555319) 1 NC_000913.2 ethanolamine ammonia-lyase, light chain; GO_process: amine catabolic process [goid 0009310]; ethanolamine ammonia-lyase, small subunit (light chain) 2555319 eutC 946925 eutC Escherichia coli K12 ethanolamine ammonia-lyase, small subunit (light chain) NP_416935.1 2554432 R 83333 CDS NP_416936.4 90111437 946924 complement(2555340..2556701) 1 NC_000913.2 ethanolamine ammonia-lyase, heavy chain; GO_process: amine catabolic process [goid 0009310]; ethanolamine ammonia-lyase, large subunit, heavy chain 2556701 eutB 946924 eutB Escherichia coli K12 ethanolamine ammonia-lyase, large subunit, heavy chain NP_416936.4 2555340 R 83333 CDS NP_416937.2 145698295 946923 2556880..2558088 1 NC_000913.2 putative prophage integrase; CPZ-55 prophage; predicted integrase 2558088 intZ 946923 intZ Escherichia coli K12 CPZ-55 prophage; predicted integrase NP_416937.2 2556880 D 83333 CDS NP_416938.1 16130368 946922 2558279..2558920 1 NC_000913.2 CPZ-55 prophage; predicted protein 2558920 yffL 946922 yffL Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416938.1 2558279 D 83333 CDS NP_416939.1 16130369 946921 2559390..2559635 1 NC_000913.2 CPZ-55 prophage; predicted protein 2559635 yffM 946921 yffM Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416939.1 2559390 D 83333 CDS NP_416940.2 145698296 946930 2559647..2560015 1 NC_000913.2 CPZ-55 prophage; predicted protein 2560015 yffN 946930 yffN Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416940.2 2559647 D 83333 CDS NP_416941.1 16130371 946929 2560133..2560549 1 NC_000913.2 CPZ-55 prophage; predicted protein 2560549 yffO 946929 yffO Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416941.1 2560133 D 83333 CDS NP_416942.1 16130372 946928 2560546..2561139 1 NC_000913.2 CPZ-55 prophage; predicted protein 2561139 yffP 946928 yffP Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416942.1 2560546 D 83333 CDS NP_416943.2 145698297 946927 2561614..2561991 1 NC_000913.2 CPZ-55 prophage; predicted protein 2561991 yffQ 946927 yffQ Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416943.2 2561614 D 83333 CDS NP_416944.1 16130374 946931 2562002..2562394 1 NC_000913.2 CPZ-55 prophage; predicted protein 2562394 yffR 946931 yffR Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416944.1 2562002 D 83333 CDS NP_416945.2 145698298 946932 2562545..2563354 1 NC_000913.2 CPZ-55 prophage; predicted protein 2563354 yffS 946932 yffS Escherichia coli K12 CPZ-55 prophage; predicted protein NP_416945.2 2562545 D 83333 CDS NP_416946.1 16130376 946937 complement(2563503..2564906) 1 NC_000913.2 reactivating factor for ethanolamine ammonia lyase 2564906 eutA 946937 eutA Escherichia coli K12 reactivating factor for ethanolamine ammonia lyase NP_416946.1 2563503 R 83333 CDS NP_416947.1 16130377 944979 complement(2564903..2566129) 1 NC_000913.2 ethanolamine utilization; homolog of Salmonella putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amine catabolic process [goid 0009310]; predicted inner membrane protein 2566129 eutH 944979 eutH Escherichia coli K12 predicted inner membrane protein NP_416947.1 2564903 R 83333 CDS NP_416948.4 90111438 946233 complement(2566346..2567533) 1 NC_000913.2 ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: amine catabolic process [goid 0009310]; predicted alcohol dehydrogenase in ethanolamine utilization 2567533 eutG 946233 eutG Escherichia coli K12 predicted alcohol dehydrogenase in ethanolamine utilization NP_416948.4 2566346 R 83333 CDS NP_416949.1 16130379 947588 complement(2567523..2568359) 1 NC_000913.2 ethanolamine utilization; homolog of Salmonella gene; GO_process: amine catabolic process [goid 0009310]; GO_process: protein folding [goid 0006457]; predicted chaperonin, ethanolamine utilization protein 2568359 eutJ 947588 eutJ Escherichia coli K12 predicted chaperonin, ethanolamine utilization protein NP_416949.1 2567523 R 83333 CDS NP_416950.1 16130380 946943 complement(2568370..2569773) 1 NC_000913.2 ethanolamine utilization; similar to acetaldehyde dehydrogenase; GO_process: amine catabolic process [goid 0009310]; predicted aldehyde dehydrogenase, ethanolamine utilization protein 2569773 eutE 946943 eutE Escherichia coli K12 predicted aldehyde dehydrogenase, ethanolamine utilization protein NP_416950.1 2568370 R 83333 CDS NP_416951.1 16130381 946945 complement(2569785..2570072) 1 NC_000913.2 detox protein; GO_process: xenobiotic metabolic process [goid 0006805]; predicted carboxysome structural protein, ethanolamine utilization protein 2570072 eutN 946945 eutN Escherichia coli K12 predicted carboxysome structural protein, ethanolamine utilization protein NP_416951.1 2569785 R 83333 CDS NP_416952.2 90111439 946942 complement(2570179..2570472) 1 NC_000913.2 detox protein; GO_process: xenobiotic metabolic process [goid 0006805]; predicted carboxysome structural protein, ethanolamine utilization protein 2570472 eutM 946942 eutM Escherichia coli K12 predicted carboxysome structural protein, ethanolamine utilization protein NP_416952.2 2570179 R 83333 CDS NP_416953.1 16130383 946940 complement(2570511..2571527) 1 NC_000913.2 ethanolamine utilization; homolog of Salmonella acetyl/butyryl P transferase; GO_process: amine catabolic process [goid 0009310]; predicted phosphotransacetylase subunit 2571527 eutD 946940 eutD Escherichia coli K12 predicted phosphotransacetylase subunit NP_416953.1 2570511 R 83333 CDS NP_416954.1 16130384 946939 complement(2571524..2572327) 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; predicted cobalamin adenosyltransferase in ethanolamine utilization 2572327 eutT 946939 eutT Escherichia coli K12 predicted cobalamin adenosyltransferase in ethanolamine utilization NP_416954.1 2571524 R 83333 CDS NP_416955.1 16130385 946935 complement(2572324..2573025) 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; conserved protein 2573025 eutQ 946935 eutQ Escherichia coli K12 conserved protein NP_416955.1 2572324 R 83333 CDS NP_416956.1 16130386 946933 complement(2573000..2573479) 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; conserved protein with nucleoside triphosphate hydrolase domain 2573479 eutP 946933 eutP Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_416956.1 2573000 R 83333 CDS NP_416957.4 90111440 946936 complement(2573492..2573827) 1 NC_000913.2 GO_process: amine catabolic process [goid 0009310]; predicted carboxysome structural protein with predicted role in ethanol utilization 2573827 eutS 946936 eutS Escherichia coli K12 predicted carboxysome structural protein with predicted role in ethanol utilization NP_416957.4 2573492 R 83333 CDS NP_416958.1 16130388 946947 complement(2574120..2576399) 1 NC_000913.2 putative multimodular enzyme; fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase 2576399 maeB 946947 maeB Escherichia coli K12 fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase NP_416958.1 2574120 R 83333 CDS NP_416959.1 16130389 947006 2576688..2577638 1 NC_000913.2 GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; transaldolase A 2577638 talA 947006 talA Escherichia coli K12 transaldolase A NP_416959.1 2576688 D 83333 CDS NP_416960.1 16130390 945865 2577658..2579661 1 NC_000913.2 transketolase 2 isozyme; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; transketolase 2, thiamin-binding 2579661 tktB 945865 tktB Escherichia coli K12 transketolase 2, thiamin-binding NP_416960.1 2577658 D 83333 CDS NP_416961.1 16130391 946828 complement(2579756..2580799) 1 NC_000913.2 predicted protein 2580799 ypfG 946828 ypfG Escherichia coli K12 predicted protein NP_416961.1 2579756 R 83333 CDS NP_416962.1 16130392 947072 complement(2580925..2581500) 1 NC_000913.2 predicted NUDIX hydrolase 2581500 nudK 947072 nudK Escherichia coli K12 predicted NUDIX hydrolase NP_416962.1 2580925 R 83333 CDS NP_416963.1 16130393 947383 complement(2581568..2583547) 1 NC_000913.2 fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit 2583547 aegA 947383 aegA Escherichia coli K12 fused predicted oxidoreductase: FeS binding subunit/NAD/FAD-binding subunit NP_416963.1 2581568 R 83333 CDS NP_416964.1 16130394 946948 2583753..2585453 1 NC_000913.2 sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with NarP (NarL) 2585453 narQ 946948 narQ Escherichia coli K12 sensory histidine kinase in two-component regulatory system with NarP (NarL) NP_416964.1 2583753 D 83333 CDS NP_416965.1 16130395 945464 2585617..2588730 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; aminoglycoside/multidrug efflux system 2588730 acrD 945464 acrD Escherichia coli K12 aminoglycoside/multidrug efflux system NP_416965.1 2585617 D 83333 CDS YP_001165325.1 145698299 5061513 complement(2588829..2588888) 1 NC_000913.2 hypothetical protein 2588888 ypfM 5061513 ypfM Escherichia coli K12 hypothetical protein YP_001165325.1 2588829 R 83333 CDS NP_416966.1 16130396 946953 2589269..2589625 1 NC_000913.2 conserved protein 2589625 yffB 946953 yffB Escherichia coli K12 conserved protein NP_416966.1 2589269 D 83333 CDS NP_416967.1 16130397 948313 2589629..2590756 1 NC_000913.2 GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; N-succinyl-diaminopimelate deacylase 2590756 dapE 948313 dapE Escherichia coli K12 N-succinyl-diaminopimelate deacylase NP_416967.1 2589629 D 83333 CDS YP_588465.1 94541122 1450286 2590784..2590984 1 NC_000913.2 GO_component: anchored to membrane [goid 0031225]; predicted protein 2590984 ypfN 1450286 ypfN Escherichia coli K12 predicted protein YP_588465.1 2590784 D 83333 CDS NP_416968.2 90111441 947571 complement(2591094..2591792) 1 NC_000913.2 predicted hydrolase 2591792 ypfH 947571 ypfH Escherichia coli K12 predicted hydrolase NP_416968.2 2591094 R 83333 CDS NP_416969.1 16130399 946053 complement(2591866..2593881) 1 NC_000913.2 predicted hydrolase 2593881 ypfI 946053 ypfI Escherichia coli K12 predicted hydrolase NP_416969.1 2591866 R 83333 CDS NP_416970.1 16130400 946956 complement(2593896..2594759) 1 NC_000913.2 conserved protein 2594759 ypfJ 946956 ypfJ Escherichia coli K12 conserved protein NP_416970.1 2593896 R 83333 CDS NP_416971.1 16130401 946957 complement(2594927..2595640) 1 NC_000913.2 phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylaminoimidazole-succinocarboxamide synthetase 2595640 purC 946957 purC Escherichia coli K12 phosphoribosylaminoimidazole-succinocarboxamide synthetase NP_416971.1 2594927 R 83333 CDS NP_416972.4 90111442 946954 complement(2595853..2596887) 1 NC_000913.2 lipoprotein-34; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; lipoprotein 2596887 nlpB 946954 nlpB Escherichia coli K12 lipoprotein NP_416972.4 2595853 R 83333 CDS NP_416973.1 16130403 946952 complement(2596904..2597782) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; dihydrodipicolinate synthase 2597782 dapA 946952 dapA Escherichia coli K12 dihydrodipicolinate synthase NP_416973.1 2596904 R 83333 CDS NP_416974.4 90111443 946950 2597928..2598500 1 NC_000913.2 transcriptional regulation of gcv operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, regulatory protein accessory to GcvA 2598500 gcvR 946950 gcvR Escherichia coli K12 DNA-binding transcriptional repressor, regulatory protein accessory to GcvA NP_416974.4 2597928 D 83333 CDS NP_416975.1 16130405 946949 2598500..2598970 1 NC_000913.2 bacterioferritin comigratory protein; GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; thiol peroxidase, thioredoxin-dependent 2598970 bcp 946949 bcp Escherichia coli K12 thiol peroxidase, thioredoxin-dependent NP_416975.1 2598500 D 83333 CDS NP_416976.4 90111444 946959 2599223..2599840 1 NC_000913.2 hydrogenase 4 Fe-S subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, 4Fe-4S subunit 2599840 hyfA 946959 hyfA Escherichia coli K12 hydrogenase 4, 4Fe-4S subunit NP_416976.4 2599223 D 83333 CDS NP_416977.1 16130407 946961 2599840..2601858 1 NC_000913.2 hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2601858 hyfB 946961 hyfB Escherichia coli K12 hydrogenase 4, membrane subunit NP_416977.1 2599840 D 83333 CDS NP_416978.4 90111445 947492 2601869..2602816 1 NC_000913.2 hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2602816 hyfC 947492 hyfC Escherichia coli K12 hydrogenase 4, membrane subunit NP_416978.4 2601869 D 83333 CDS NP_416979.1 16130409 947290 2602833..2604272 1 NC_000913.2 hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2604272 hyfD 947290 hyfD Escherichia coli K12 hydrogenase 4, membrane subunit NP_416979.1 2602833 D 83333 CDS NP_416980.1 16130410 945298 2604284..2604934 1 NC_000913.2 hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2604934 hyfE 945298 hyfE Escherichia coli K12 hydrogenase 4, membrane subunit NP_416980.1 2604284 D 83333 CDS NP_416981.1 16130411 946962 2604939..2606519 1 NC_000913.2 hydrogenase 4 membrane subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, membrane subunit 2606519 hyfF 946962 hyfF Escherichia coli K12 hydrogenase 4, membrane subunit NP_416981.1 2604939 D 83333 CDS NP_416982.1 16130412 946964 2606509..2608176 1 NC_000913.2 hydrogenase 4 subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, subunit 2608176 hyfG 946964 hyfG Escherichia coli K12 hydrogenase 4, subunit NP_416982.1 2606509 D 83333 CDS NP_416983.1 16130413 946965 2608186..2608731 1 NC_000913.2 hydrogenase 4 Fe-S subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, Fe-S subunit 2608731 hyfH 946965 hyfH Escherichia coli K12 hydrogenase 4, Fe-S subunit NP_416983.1 2608186 D 83333 CDS NP_416984.1 16130414 946966 2608728..2609486 1 NC_000913.2 hydrogenase 4 Fe-S subunit; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 4, Fe-S subunit 2609486 hyfI 946966 hyfI Escherichia coli K12 hydrogenase 4, Fe-S subunit NP_416984.1 2608728 D 83333 CDS NP_416985.4 90111446 947713 2609479..2609892 1 NC_000913.2 GO_process: translation [goid 0006412]; predicted processing element hydrogenase 4 2609892 hyfJ 947713 hyfJ Escherichia coli K12 predicted processing element hydrogenase 4 NP_416985.4 2609479 D 83333 CDS NP_416986.4 90111447 948886 2609922..2611934 1 NC_000913.2 putative 2-component regulator, interaction with sigma 54; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, formate sensing 2611934 hyfR 948886 hyfR Escherichia coli K12 DNA-binding transcriptional activator, formate sensing NP_416986.4 2609922 D 83333 CDS NP_416987.1 16130417 949032 2611956..2612804 1 NC_000913.2 probable formate transporter (formate channel 2); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted formate transporter 2612804 focB 949032 focB Escherichia coli K12 predicted formate transporter NP_416987.1 2611956 D 83333 CDS NP_416988.1 16130418 945894 complement(2612842..2613903) 1 NC_000913.2 putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein 2613903 yfgO 945894 yfgO Escherichia coli K12 predicted inner membrane protein NP_416988.1 2612842 R 83333 CDS NP_416989.1 16130419 947029 2614116..2615579 1 NC_000913.2 predicted peptidase 2615579 yfgC 947029 yfgC Escherichia coli K12 predicted peptidase NP_416989.1 2614116 D 83333 CDS NP_416990.1 16130420 946974 2615600..2615959 1 NC_000913.2 putative oxidoreductase; GO_process: xenobiotic metabolic process [goid 0006805]; predicted oxidoreductase 2615959 yfgD 946974 yfgD Escherichia coli K12 predicted oxidoreductase NP_416990.1 2615600 D 83333 CDS NP_416991.1 16130421 946977 complement(2616097..2616843) 1 NC_000913.2 putative DNA replication factor; GO_process: DNA-dependent DNA replication [goid 0006261]; ATPase regulatory factor involved in DnaA inactivation 2616843 hda 946977 hda Escherichia coli K12 ATPase regulatory factor involved in DnaA inactivation NP_416991.1 2616097 R 83333 CDS NP_416992.1 16130422 946978 complement(2616893..2618182) 1 NC_000913.2 uracil transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uracil transporter 2618182 uraA 946978 uraA Escherichia coli K12 uracil transporter NP_416992.1 2616893 R 83333 CDS NP_416993.2 90111448 946979 complement(2618268..2618894) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uracil phosphoribosyltransferase 2618894 upp 946979 upp Escherichia coli K12 uracil phosphoribosyltransferase NP_416993.2 2618268 R 83333 CDS NP_416994.1 16130424 946975 2619219..2620256 1 NC_000913.2 phosphoribosylaminoimidazole synthetase = AIR synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylaminoimidazole synthetase 2620256 purM 946975 purM Escherichia coli K12 phosphoribosylaminoimidazole synthetase NP_416994.1 2619219 D 83333 CDS NP_416995.1 16130425 946973 2620256..2620894 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylglycinamide formyltransferase 1 2620894 purN 946973 purN Escherichia coli K12 phosphoribosylglycinamide formyltransferase 1 NP_416995.1 2620256 D 83333 CDS NP_416996.1 16130426 946971 2621066..2623132 1 NC_000913.2 polyphosphate kinase; GO_process: phosphorus metabolic process [goid 0006793]; polyphosphate kinase, component of RNA degradosome 2623132 ppk 946971 ppk Escherichia coli K12 polyphosphate kinase, component of RNA degradosome NP_416996.1 2621066 D 83333 CDS NP_416997.1 16130427 946970 2623137..2624678 1 NC_000913.2 GO_process: phosphorus metabolic process [goid 0006793]; exopolyphosphatase 2624678 ppx 946970 ppx Escherichia coli K12 exopolyphosphatase NP_416997.1 2623137 D 83333 CDS NP_416998.1 16130428 946968 complement(2624717..2626960) 1 NC_000913.2 putative cytochrome C-type biogenesis protein; predicted inner membrane protein 2626960 yfgF 946968 yfgF Escherichia coli K12 predicted inner membrane protein NP_416998.1 2624717 R 83333 CDS NP_416999.1 16130429 946980 2627312..2627503 1 NC_000913.2 predicted protein 2627503 yfgG 946980 yfgG Escherichia coli K12 predicted protein NP_416999.1 2627312 D 83333 CDS NP_417000.1 16130430 945709 2627814..2628332 1 NC_000913.2 putative outer membrane lipoprotein; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane lipoprotein 2628332 yfgH 945709 yfgH Escherichia coli K12 predicted outer membrane lipoprotein NP_417000.1 2627814 D 83333 CDS NP_417001.1 16130431 945168 2628348..2628887 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; conserved protein 2628887 yfgI 945168 yfgI Escherichia coli K12 conserved protein NP_417001.1 2628348 D 83333 CDS NP_417002.1 16130432 947334 complement(2628980..2630557) 1 NC_000913.2 GMP synthetase (glutamine-hydrolyzing); GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GMP synthetase (glutamine aminotransferase) 2630557 guaA 947334 guaA Escherichia coli K12 GMP synthetase (glutamine aminotransferase) NP_417002.1 2628980 R 83333 CDS NP_417003.1 16130433 946985 complement(2630626..2632092) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; IMP dehydrogenase 2632092 guaB 946985 guaB Escherichia coli K12 IMP dehydrogenase NP_417003.1 2630626 R 83333 CDS NP_417004.1 16130434 946988 2632254..2633624 1 NC_000913.2 GO_process: DNA catabolic process [goid 0006308]; exonuclease VII, large subunit 2633624 xseA 946988 xseA Escherichia coli K12 exonuclease VII, large subunit NP_417004.1 2632254 D 83333 CDS NP_417005.2 90111449 946984 complement(2633621..2633836) 1 NC_000913.2 GO_process: biotin carboxyl carrier protein biosynthetic process [goid 0042966]; predicted protein 2633836 yfgJ 946984 yfgJ Escherichia coli K12 predicted protein NP_417005.2 2633621 R 83333 CDS NP_417006.2 90111450 946983 complement(2633906..2635378) 1 NC_000913.2 putative GTP-binding factor; predicted GTP-binding protein 2635378 der 946983 der Escherichia coli K12 predicted GTP-binding protein NP_417006.2 2633906 R 83333 CDS NP_417007.1 16130437 946982 complement(2635496..2636674) 1 NC_000913.2 putative dehydrogenase; GO_process: protein modification [goid 0006464]; protein assembly complex, lipoprotein component 2636674 yfgL 946982 yfgL Escherichia coli K12 protein assembly complex, lipoprotein component NP_417007.1 2635496 R 83333 CDS NP_417008.1 16130438 946981 complement(2636685..2637305) 1 NC_000913.2 conserved protein 2637305 yfgM 946981 yfgM Escherichia coli K12 conserved protein NP_417008.1 2636685 R 83333 CDS NP_417009.1 16130439 946989 complement(2637323..2638597) 1 NC_000913.2 histidine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; histidyl tRNA synthetase 2638597 hisS 946989 hisS Escherichia coli K12 histidyl tRNA synthetase NP_417009.1 2637323 R 83333 CDS NP_417010.1 16130440 946991 complement(2638708..2639826) 1 NC_000913.2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2639826 ispG 946991 ispG Escherichia coli K12 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase NP_417010.1 2638708 R 83333 CDS NP_417011.1 16130441 946992 complement(2639853..2640866) 1 NC_000913.2 putative membrane protein; conserved protein 2640866 yfgA 946992 yfgA Escherichia coli K12 conserved protein NP_417011.1 2639853 R 83333 CDS NP_417012.1 16130442 946249 complement(2641151..2642305) 1 NC_000913.2 predicted enzyme 2642305 yfgB 946249 yfgB Escherichia coli K12 predicted enzyme NP_417012.1 2641151 R 83333 CDS NP_417013.1 16130443 945611 complement(2642455..2642886) 1 NC_000913.2 nucleoside diphosphate kinase; GO_component: periplasmic space [goid 0042597]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase 2642886 ndk 945611 ndk Escherichia coli K12 multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase NP_417013.1 2642455 R 83333 CDS NP_417014.1 16130444 947152 complement(2643035..2645347) 1 NC_000913.2 penicillin binding protein 1C (PBP 1C); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; fused transglycosylase/transpeptidase 2645347 pbpC 947152 pbpC Escherichia coli K12 fused transglycosylase/transpeptidase NP_417014.1 2643035 R 83333 CDS NP_417015.1 16130445 947302 complement(2645348..2650309) 1 NC_000913.2 conserved protein 2650309 yfhM 947302 yfhM Escherichia coli K12 conserved protein NP_417015.1 2645348 R 83333 CDS NP_417016.4 90111451 946993 2650516..2651361 1 NC_000913.2 putative thiosulfate sulfurtransferase; GO_process: sulfur metabolic process [goid 0006790]; 3-mercaptopyruvate sulfurtransferase 2651361 sseA 946993 sseA Escherichia coli K12 3-mercaptopyruvate sulfurtransferase NP_417016.4 2650516 D 83333 CDS NP_417017.4 90111452 946994 complement(2652179..2652955) 1 NC_000913.2 enhanced serine sensitivity; GO_process: sulfur metabolic process [goid 0006790]; rhodanase-like enzyme, sulfur transfer from thiosulfate 2652955 sseB 946994 sseB Escherichia coli K12 rhodanase-like enzyme, sulfur transfer from thiosulfate NP_417017.4 2652179 R 83333 CDS NP_417018.4 90111453 948766 complement(2653097..2654380) 1 NC_000913.2 putative peptidase; aminopeptidase B 2654380 pepB 948766 pepB Escherichia coli K12 aminopeptidase B NP_417018.4 2653097 R 83333 CDS NP_417019.1 16130449 945196 complement(2654558..2654758) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; conserved protein 2654758 iscX 945196 iscX Escherichia coli K12 conserved protein NP_417019.1 2654558 R 83333 CDS NP_417020.1 16130450 947160 complement(2654770..2655105) 1 NC_000913.2 [2FE-2S] ferredoxin, electron carrer protein; GO_function: electron carrier activity [goid 0009055]; [2Fe-2S] ferredoxin 2655105 fdx 947160 fdx Escherichia coli K12 [2Fe-2S] ferredoxin NP_417020.1 2654770 R 83333 CDS NP_417021.1 16130451 944885 complement(2655107..2656957) 1 NC_000913.2 DnaK-homologue chaperone Hsc66; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; DnaK-like molecular chaperone specific for IscU 2656957 hscA 944885 hscA Escherichia coli K12 DnaK-like molecular chaperone specific for IscU NP_417021.1 2655107 R 83333 CDS NP_417022.1 16130452 946995 complement(2656974..2657489) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; DnaJ-like molecular chaperone specific for IscU 2657489 hscB 946995 hscB Escherichia coli K12 DnaJ-like molecular chaperone specific for IscU NP_417022.1 2656974 R 83333 CDS NP_417023.1 16130453 946999 complement(2657585..2657908) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; FeS cluster assembly protein 2657908 iscA 946999 iscA Escherichia coli K12 FeS cluster assembly protein NP_417023.1 2657585 R 83333 CDS NP_417024.1 16130454 947002 complement(2657925..2658311) 1 NC_000913.2 GO_process: translation [goid 0006412]; scaffold protein 2658311 iscU 947002 iscU Escherichia coli K12 scaffold protein NP_417024.1 2657925 R 83333 CDS YP_026169.1 49176235 947004 complement(2658339..2659553) 1 NC_000913.2 cysteine desulfurase cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent; GO_process: RNA modification [goid 0009451]; cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent 2659553 iscS 947004 iscS Escherichia coli K12 cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent YP_026169.1 2658339 R 83333 CDS NP_417026.1 16130456 945279 complement(2659665..2660153) 1 NC_000913.2 Fe-S cluster-containing transcription factor transcriptional repressor of iscRSUA operon; GO_process: translation [goid 0006412]; DNA-binding transcriptional repressor 2660153 iscR 945279 iscR Escherichia coli K12 DNA-binding transcriptional repressor NP_417026.1 2659665 R 83333 CDS NP_417027.1 16130457 948610 complement(2660605..2661345) 1 NC_000913.2 predicted methyltransferase 2661345 trmJ 948610 trmJ Escherichia coli K12 predicted methyltransferase NP_417027.1 2660605 R 83333 CDS NP_417028.1 16130458 947285 2661464..2662267 1 NC_000913.2 inositol-1-monophosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; inositol monophosphatase 2662267 suhB 947285 suhB Escherichia coli K12 inositol monophosphatase NP_417028.1 2661464 D 83333 CDS NP_417029.3 49176236 945059 2662385..2663266 1 NC_000913.2 putative enzyme (3.4.-); predicted peptidase 2663266 yfhR 945059 yfhR Escherichia coli K12 predicted peptidase NP_417029.3 2662385 D 83333 CDS NP_417030.2 90111454 947009 2663457..2664737 1 NC_000913.2 stationary phase inducible protein 2664737 csiE 947009 csiE Escherichia coli K12 stationary phase inducible protein NP_417030.2 2663457 D 83333 CDS NP_417031.1 16130461 947007 complement(2664729..2665868) 1 NC_000913.2 MFS (major facilitator superfamily) transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted 3-phenylpropionic transporter 2665868 hcaT 947007 hcaT Escherichia coli K12 predicted 3-phenylpropionic transporter NP_417031.1 2664729 R 83333 CDS NP_417032.1 16130462 947000 complement(2666028..2666918) 1 NC_000913.2 transcriptional activator of hca cluster; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism 2666918 hcaR 947000 hcaR Escherichia coli K12 DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism NP_417032.1 2666028 R 83333 CDS NP_417033.1 16130463 946998 2667054..2668415 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; 3-phenylpropionate dioxygenase, large (alpha) subunit 2668415 hcaE 946998 hcaE Escherichia coli K12 3-phenylpropionate dioxygenase, large (alpha) subunit NP_417033.1 2667054 D 83333 CDS NP_417034.1 16130464 946997 2668412..2668930 1 NC_000913.2 small terminal subunit of phenylpropionate dioxygenase; GO_process: carbohydrate catabolic process [goid 0016052]; 3-phenylpropionate dioxygenase, small (beta) subunit 2668930 hcaF 946997 hcaF Escherichia coli K12 3-phenylpropionate dioxygenase, small (beta) subunit NP_417034.1 2668412 D 83333 CDS NP_417035.1 16130465 947015 2668930..2669250 1 NC_000913.2 ferredoxin subunit of phenylpropionate dioxygenase; GO_process: carbohydrate catabolic process [goid 0016052]; 3-phenylpropionate dioxygenase, predicted ferredoxin subunit 2669250 hcaC 947015 hcaC Escherichia coli K12 3-phenylpropionate dioxygenase, predicted ferredoxin subunit NP_417035.1 2668930 D 83333 CDS NP_417036.1 16130466 945346 2669247..2670059 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2670059 hcaB 945346 hcaB Escherichia coli K12 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase NP_417036.1 2669247 D 83333 CDS NP_417037.1 16130467 945427 2670069..2671271 1 NC_000913.2 ferredoxin reductase subunit of phenylpropionate dioxygenase; GO_process: carbohydrate catabolic process [goid 0016052]; phenylpropionate dioxygenase, ferredoxin reductase subunit 2671271 hcaD 945427 hcaD Escherichia coli K12 phenylpropionate dioxygenase, ferredoxin reductase subunit NP_417037.1 2670069 D 83333 CDS NP_417038.4 145698300 947365 2671368..2671790 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 2671790 yphA 947365 yphA Escherichia coli K12 predicted inner membrane protein NP_417038.4 2671368 D 83333 CDS NP_417039.1 16130469 947017 complement(2671838..2672710) 1 NC_000913.2 conserved protein 2672710 yphB 947017 yphB Escherichia coli K12 conserved protein NP_417039.1 2671838 R 83333 CDS NP_417040.2 90111455 947019 complement(2672722..2673783) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 2673783 yphC 947019 yphC Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_417040.2 2672722 R 83333 CDS NP_417041.1 16130471 949063 complement(2673849..2674847) 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 2674847 yphD 949063 yphD Escherichia coli K12 predicted sugar transporter subunit: membrane component of ABC superfamily NP_417041.1 2673849 R 83333 CDS NP_417042.1 16130472 948990 complement(2674872..2676383) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components 2676383 yphE 948990 yphE Escherichia coli K12 fused predicted sugar transporter subunits of ABC superfamily: ATP-binding components NP_417042.1 2674872 R 83333 CDS NP_417043.1 16130473 947020 complement(2676406..2677389) 1 NC_000913.2 putative LACI-type transcriptional regulator; GO_component: periplasmic space [goid 0042597]; predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily 2677389 yphF 947020 yphF Escherichia coli K12 predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily NP_417043.1 2676406 R 83333 CDS NP_417044.4 162135907 947021 complement(2677486..2680767) 1 NC_000913.2 conserved protein 2680767 yphG 947021 yphG Escherichia coli K12 conserved protein NP_417044.4 2677486 R 83333 CDS NP_417045.4 90111457 947023 2680885..2682078 1 NC_000913.2 putative NAGC-like transcriptional regulator; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 2682078 yphH 947023 yphH Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417045.4 2680885 D 83333 CDS NP_417046.1 16130476 947022 complement(2682276..2683529) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: folic acid biosynthetic process [goid 0046656]; serine hydroxymethyltransferase 2683529 glyA 947022 glyA Escherichia coli K12 serine hydroxymethyltransferase NP_417046.1 2682276 R 83333 CDS NP_417047.1 16130477 947018 2683857..2685047 1 NC_000913.2 dihydropteridine reductase, ferrisiderophore reductase activity; fused nitric oxide dioxygenase/dihydropteridine reductase 2 2685047 hmp 947018 hmp Escherichia coli K12 fused nitric oxide dioxygenase/dihydropteridine reductase 2 NP_417047.1 2683857 D 83333 CDS NP_417048.1 16130478 947016 complement(2685092..2685430) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: transcription [goid 0006350]; regulatory protein P-II for glutamine synthetase 2685430 glnB 947016 glnB Escherichia coli K12 regulatory protein P-II for glutamine synthetase NP_417048.1 2685092 R 83333 CDS NP_417049.1 16130479 947042 complement(2685491..2686825) 1 NC_000913.2 putative 2-component transcriptional regulator; GO_process: protein modification [goid 0006464]; predicted DNA-binding response regulator in two-component system 2686825 yfhA 947042 yfhA Escherichia coli K12 predicted DNA-binding response regulator in two-component system NP_417049.1 2685491 R 83333 CDS NP_417050.1 16130480 947010 complement(2686815..2687528) 1 NC_000913.2 putative alpha helix protein; conserved protein 2687528 yfhG 947010 yfhG Escherichia coli K12 conserved protein NP_417050.1 2686815 R 83333 CDS NP_417051.2 90111458 947013 complement(2687693..2689120) 1 NC_000913.2 putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; predicted sensory kinase in two-component system 2689120 yfhK 947013 yfhK Escherichia coli K12 predicted sensory kinase in two-component system NP_417051.2 2687693 R 83333 CDS YP_026170.1 49176239 947032 complement(2689678..2693565) 1 NC_000913.2 phosphoribosylformyl-glycineamide synthetase = FGAM synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylformyl-glycineamide synthetase 2693565 purL 947032 purL Escherichia coli K12 phosphoribosylformyl-glycineamide synthetase YP_026170.1 2689678 R 83333 CDS NP_417053.1 16130483 947028 2693961..2695379 1 NC_000913.2 putative periplasmic binding transport protein; GO_component: periplasmic space [goid 0042597]; predicted transglycosylase 2695379 yfhD 947028 yfhD Escherichia coli K12 predicted transglycosylase NP_417053.1 2693961 D 83333 CDS NP_417054.2 145698301 947027 complement(2695376..2695879) 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; tRNA-specific adenosine deaminase 2695879 tadA 947027 tadA Escherichia coli K12 tRNA-specific adenosine deaminase NP_417054.2 2695376 R 83333 CDS NP_417055.4 90111459 947026 complement(2695937..2696572) 1 NC_000913.2 conserved protein 2696572 yfhB 947026 yfhB Escherichia coli K12 conserved protein NP_417055.4 2695937 R 83333 CDS NP_417056.2 90111460 947030 2696781..2697629 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted DNA-binding transcriptional regulator 2697629 yfhH 947030 yfhH Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417056.2 2696781 D 83333 CDS NP_417057.1 16130487 947031 2697685..2697945 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; predicted 4Fe-4S cluster-containing protein 2697945 yfhL 947031 yfhL Escherichia coli K12 predicted 4Fe-4S cluster-containing protein NP_417057.1 2697685 D 83333 CDS NP_417058.1 16130488 947037 complement(2698640..2699020) 1 NC_000913.2 CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase; GO_component: cytoplasm [goid 0005737]; holo-[acyl-carrier-protein] synthase 1 2699020 acpS 947037 acpS Escherichia coli K12 holo-[acyl-carrier-protein] synthase 1 NP_417058.1 2698640 R 83333 CDS NP_417059.1 16130489 947039 complement(2699020..2699751) 1 NC_000913.2 pyridoxine biosynthesis; GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; pyridoxine 5'-phosphate synthase 2699751 pdxJ 947039 pdxJ Escherichia coli K12 pyridoxine 5'-phosphate synthase NP_417059.1 2699020 R 83333 CDS NP_417060.1 16130490 947038 complement(2699763..2700491) 1 NC_000913.2 protein interacts with RecR and possibly RecF proteins; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; gap repair protein 2700491 recO 947038 recO Escherichia coli K12 gap repair protein NP_417060.1 2699763 R 83333 CDS NP_417061.1 16130491 947036 complement(2700503..2701408) 1 NC_000913.2 GTP-binding protein; GO_process: cell cycle [goid 0007049]; membrane-associated, 16S rRNA-binding GTPase 2701408 era 947036 era Escherichia coli K12 membrane-associated, 16S rRNA-binding GTPase NP_417061.1 2700503 R 83333 CDS NP_417062.1 16130492 947033 complement(2701405..2702085) 1 NC_000913.2 RNase III, ds RNA; GO_process: RNA catabolic process [goid 0006401]; RNase III 2702085 rnc 947033 rnc Escherichia coli K12 RNase III NP_417062.1 2701405 R 83333 CDS NP_417063.1 16130493 947040 complement(2702357..2703331) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; leader peptidase (signal peptidase I) 2703331 lepB 947040 lepB Escherichia coli K12 leader peptidase (signal peptidase I) NP_417063.1 2702357 R 83333 CDS NP_417064.1 16130494 947051 complement(2703347..2705146) 1 NC_000913.2 GTP-binding elongation factor, may be inner membrane protein; GO_process: translation [goid 0006412]; GTP-binding membrane protein 2705146 lepA 947051 lepA Escherichia coli K12 GTP-binding membrane protein NP_417064.1 2703347 R 83333 CDS NP_417065.1 16130495 947052 complement(2705344..2705823) 1 NC_000913.2 sigma-E factor, negative regulatory protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: transcription [goid 0006350]; GO_process: response to starvation [goid 0042594]; RseC protein involved in reduction of the SoxR iron-sulfur cluster 2705823 rseC 947052 rseC Escherichia coli K12 RseC protein involved in reduction of the SoxR iron-sulfur cluster NP_417065.1 2705344 R 83333 CDS NP_417066.1 16130496 947054 complement(2705820..2706776) 1 NC_000913.2 regulates activity of sigma-E factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to starvation [goid 0042594]; anti-sigma factor 2706776 rseB 947054 rseB Escherichia coli K12 anti-sigma factor NP_417066.1 2705820 R 83333 CDS NP_417067.1 16130497 947053 complement(2706776..2707426) 1 NC_000913.2 sigma-E factor, negative regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; anti-sigma factor 2707426 rseA 947053 rseA Escherichia coli K12 anti-sigma factor NP_417067.1 2706776 R 83333 CDS NP_417068.1 16130498 947050 complement(2707459..2708034) 1 NC_000913.2 RNA polymerase, sigma-E factor; heat shock and oxidative stress; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; RNA polymerase, sigma 24 (sigma E) factor 2708034 rpoE 947050 rpoE Escherichia coli K12 RNA polymerase, sigma 24 (sigma E) factor NP_417068.1 2707459 R 83333 CDS NP_417069.1 16130499 947049 2708442..2710064 1 NC_000913.2 quinolinate synthetase, B protein; GO_process: NAD biosynthetic process [goid 0009435]; quinolinate synthase, L-aspartate oxidase (B protein) subunit 2710064 nadB 947049 nadB Escherichia coli K12 quinolinate synthase, L-aspartate oxidase (B protein) subunit NP_417069.1 2708442 D 83333 CDS NP_417070.2 90111461 947047 complement(2710049..2710786) 1 NC_000913.2 putative enzyme; predicted S-adenosyl-L-methionine-dependent methyltransferase 2710786 yfiC 947047 yfiC Escherichia coli K12 predicted S-adenosyl-L-methionine-dependent methyltransferase NP_417070.2 2710049 R 83333 CDS NP_417071.1 16130501 947055 2710918..2712252 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ATP-dependent RNA helicase 2712252 srmB 947055 srmB Escherichia coli K12 ATP-dependent RNA helicase NP_417071.1 2710918 D 83333 CDS NP_417072.4 90111462 947064 complement(2712461..2713342) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2713342 yfiE 947064 yfiE Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417072.4 2712461 R 83333 CDS NP_417073.1 16130503 947065 2713445..2714032 1 NC_000913.2 neutral amino-acid efflux system 2714032 eamB 947065 eamB Escherichia coli K12 neutral amino-acid efflux system NP_417073.1 2713445 D 83333 CDS NP_417074.1 16130504 947068 complement(2714088..2714471) 1 NC_000913.2 putative formate acetyltransferase; GO_process: anaerobic respiration [goid 0009061]; pyruvate formate lyase subunit 2714471 yfiD 947068 yfiD Escherichia coli K12 pyruvate formate lyase subunit NP_417074.1 2714088 R 83333 CDS NP_417075.1 16130505 947067 2714776..2715465 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; uracil-DNA-glycosylase 2715465 ung 947067 ung Escherichia coli K12 uracil-DNA-glycosylase NP_417075.1 2714776 D 83333 CDS NP_417076.1 16130506 947066 complement(2715513..2716550) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; predicted methyltransferase 2716550 yfiF 947066 yfiF Escherichia coli K12 predicted methyltransferase NP_417076.1 2715513 R 83333 CDS NP_417077.1 16130507 947062 2716757..2717176 1 NC_000913.2 putative thioredoxin-like protein; thioredoxin 2 2717176 trxC 947062 trxC Escherichia coli K12 thioredoxin 2 NP_417077.1 2716757 D 83333 CDS NP_417078.4 90111463 947057 2717245..2717943 1 NC_000913.2 conserved protein 2717943 yfiP 947057 yfiP Escherichia coli K12 conserved protein NP_417078.4 2717245 D 83333 CDS NP_417079.1 16130509 947056 2717975..2720635 1 NC_000913.2 fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit 2720635 yfiQ 947056 yfiQ Escherichia coli K12 fused predicted acyl-CoA synthetase: NAD(P)-binding subunit/ATP-binding subunit NP_417079.1 2717975 D 83333 CDS NP_417080.4 90111464 947059 2720749..2722104 1 NC_000913.2 phosphatidylserine synthase; phospholipid synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) 2722104 pssA 947059 pssA Escherichia coli K12 phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase) NP_417080.4 2720749 D 83333 CDS NP_417081.2 145698302 947060 2722150..2722473 1 NC_000913.2 predicted protein 2722473 yfiM 947060 yfiM Escherichia coli K12 predicted protein NP_417081.2 2722150 D 83333 CDS NP_417082.1 16130512 947069 complement(2722470..2723768) 1 NC_000913.2 alpha-ketoglutarate permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; alpha-ketoglutarate transporter 2723768 kgtP 947069 kgtP Escherichia coli K12 alpha-ketoglutarate transporter NP_417082.1 2722470 R 83333 CDS NP_417083.1 16130513 947077 complement(2729622..2732195) 1 NC_000913.2 heat shock protein; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; protein disaggregation chaperone 2732195 clpB 947077 clpB Escherichia coli K12 protein disaggregation chaperone NP_417083.1 2729622 R 83333 CDS NP_417084.1 16130514 947089 complement(2732325..2733056) 1 NC_000913.2 conserved protein 2733056 yfiH 947089 yfiH Escherichia coli K12 conserved protein NP_417084.1 2732325 R 83333 CDS NP_417085.1 16130515 947087 complement(2733053..2734033) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 23S rRNA pseudouridine synthase 2734033 rluD 947087 rluD Escherichia coli K12 23S rRNA pseudouridine synthase NP_417085.1 2733053 R 83333 CDS NP_417086.1 16130516 947086 2734168..2734905 1 NC_000913.2 predicted lipoprotein 2734905 yfiO 947086 yfiO Escherichia coli K12 predicted lipoprotein NP_417086.1 2734168 D 83333 CDS NP_417088.1 16130518 947129 2735176..2735517 1 NC_000913.2 putative yhbH sigma 54 modulator; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_process: translation [goid 0006412]; cold shock protein associated with 30S ribosomal subunit 2735517 raiA 947129 raiA Escherichia coli K12 cold shock protein associated with 30S ribosomal subunit NP_417088.1 2735176 D 83333 CDS NP_417089.1 16130519 947080 2735621..2735668 1 NC_000913.2 leader peptide of chorismate mutase-P-prephenate dehydratase; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; pheA gene leader peptide 2735668 pheL 947080 pheL Escherichia coli K12 pheA gene leader peptide NP_417089.1 2735621 D 83333 CDS NP_417090.1 16130520 947081 2735767..2736927 1 NC_000913.2 chorismate mutase-P and prephenate dehydratase; GO_component: cytoplasm [goid 0005737]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; fused chorismate mutase P/prephenate dehydratase 2736927 pheA 947081 pheA Escherichia coli K12 fused chorismate mutase P/prephenate dehydratase NP_417090.1 2735767 D 83333 CDS NP_417091.1 16130521 947115 complement(2736970..2738091) 1 NC_000913.2 chorismate mutase-T and prephenate dehydrogenase; GO_component: cytoplasm [goid 0005737]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; fused chorismate mutase T/prephenate dehydrogenase 2738091 tyrA 947115 tyrA Escherichia coli K12 fused chorismate mutase T/prephenate dehydrogenase NP_417091.1 2736970 R 83333 CDS NP_417092.1 16130522 947084 complement(2738102..2739172) 1 NC_000913.2 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tyrosine repressible); GO_process: chorismate biosynthetic process [goid 0009423]; 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible 2739172 aroF 947084 aroF Escherichia coli K12 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible NP_417092.1 2738102 R 83333 CDS NP_417093.2 90111465 947106 2739382..2739747 1 NC_000913.2 predicted protein 2739747 yfiL 947106 yfiL Escherichia coli K12 predicted protein NP_417093.2 2739382 D 83333 CDS NP_417094.1 16130524 947090 2739897..2740415 1 NC_000913.2 predicted protein 2740415 yfiR 947090 yfiR Escherichia coli K12 predicted protein NP_417094.1 2739897 D 83333 CDS NP_417095.1 16130525 947091 2740405..2741631 1 NC_000913.2 predicted diguanylate cyclase 2741631 yfiN 947091 yfiN Escherichia coli K12 predicted diguanylate cyclase NP_417095.1 2740405 D 83333 CDS NP_417096.1 16130526 947094 2741647..2742129 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane lipoprotein 2742129 yfiB 947094 yfiB Escherichia coli K12 predicted outer membrane lipoprotein NP_417096.1 2741647 D 83333 CDS NP_417097.1 16130527 947096 complement(2742205..2742552) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L19 2742552 rplS 947096 rplS Escherichia coli K12 50S ribosomal subunit protein L19 NP_417097.1 2742205 R 83333 CDS NP_417098.1 16130528 947099 complement(2742594..2743361) 1 NC_000913.2 tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA (guanine-1-)-methyltransferase 2743361 trmD 947099 trmD Escherichia coli K12 tRNA (guanine-1-)-methyltransferase NP_417098.1 2742594 R 83333 CDS NP_417099.4 90111466 947101 complement(2743392..2743940) 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; 16S rRNA processing protein 2743940 rimM 947101 rimM Escherichia coli K12 16S rRNA processing protein NP_417099.4 2743392 R 83333 CDS NP_417100.1 16130530 947103 complement(2743959..2744207) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S16 2744207 rpsP 947103 rpsP Escherichia coli K12 30S ribosomal subunit protein S16 NP_417100.1 2743959 R 83333 CDS NP_417101.1 16130531 947102 complement(2744456..2745817) 1 NC_000913.2 GTP-binding export factor binds to signal sequence, GTP and RNA; Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) 2745817 ffh 947102 ffh Escherichia coli K12 Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) NP_417101.1 2744456 R 83333 CDS NP_417102.4 145698303 947098 2745984..2746775 1 NC_000913.2 predicted inner membrane protein 2746775 ypjD 947098 ypjD Escherichia coli K12 predicted inner membrane protein NP_417102.4 2745984 D 83333 CDS YP_026171.3 145698304 2847739 2746796..2748082 1 NC_000913.2 putative membrane protein; predicted inner membrane protein 2748082 yfjD 2847739 yfjD Escherichia coli K12 predicted inner membrane protein YP_026171.3 2746796 D 83333 CDS NP_417104.1 16130533 947097 complement(2748137..2748730) 1 NC_000913.2 phage lambda replication; host DNA synthesis; heat shock protein; protein repair; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; heat shock protein 2748730 grpE 947097 grpE Escherichia coli K12 heat shock protein NP_417104.1 2748137 R 83333 CDS NP_417105.1 16130534 947092 2748853..2749731 1 NC_000913.2 NAD kinase 2749731 nadK 947092 nadK Escherichia coli K12 NAD kinase NP_417105.1 2748853 D 83333 CDS YP_026172.1 49176247 947105 2749817..2751478 1 NC_000913.2 protein used in recombination and DNA repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; recombination and repair protein 2751478 recN 947105 recN Escherichia coli K12 recombination and repair protein YP_026172.1 2749817 D 83333 CDS NP_417107.2 90111468 945583 2751627..2751968 1 NC_000913.2 small membrane protein A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; small membrane lipoprotein 2751968 smpA 945583 smpA Escherichia coli K12 small membrane lipoprotein NP_417107.2 2751627 D 83333 CDS NP_417108.4 90111469 945078 complement(2752030..2752320) 1 NC_000913.2 predicted protein 2752320 yfjF 945078 yfjF Escherichia coli K12 predicted protein NP_417108.4 2752030 R 83333 CDS NP_417109.1 16130538 945614 complement(2752310..2752786) 1 NC_000913.2 conserved protein 2752786 yfjG 945614 yfjG Escherichia coli K12 conserved protein NP_417109.1 2752310 R 83333 CDS NP_417110.1 16130539 947296 2752918..2753400 1 NC_000913.2 small protein B; trans-translation protein 2753400 smpB 947296 smpB Escherichia coli K12 trans-translation protein NP_417110.1 2752918 D 83333 CDS NP_417111.1 16130540 946160 2754181..2755422 1 NC_000913.2 prophage CP4-57 integrase; CP4-57 prophage; integrase 2755422 intA 946160 intA Escherichia coli K12 CP4-57 prophage; integrase NP_417111.1 2754181 D 83333 CDS NP_417112.1 16130541 946123 complement(2755666..2756622) 1 NC_000913.2 putative histone; CP4-57 prophage; predicted protein 2756622 yfjH 946123 yfjH Escherichia coli K12 CP4-57 prophage; predicted protein NP_417112.1 2755666 R 83333 CDS NP_417113.1 16130542 946758 2756666..2756878 1 NC_000913.2 prophage CP4-57 regulatory protein alpA; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; CP4-57 prophage; DNA-binding transcriptional activator 2756878 alpA 946758 alpA Escherichia coli K12 CP4-57 prophage; DNA-binding transcriptional activator NP_417113.1 2756666 D 83333 CDS NP_417114.1 16130543 944764 2757007..2758416 1 NC_000913.2 CP4-57 prophage; predicted protein 2758416 yfjI 944764 yfjI Escherichia coli K12 CP4-57 prophage; predicted protein NP_417114.1 2757007 D 83333 CDS NP_417115.1 16130544 947112 2758569..2759195 1 NC_000913.2 CP4-57 prophage; predicted protein 2759195 yfjJ 947112 yfjJ Escherichia coli K12 CP4-57 prophage; predicted protein NP_417115.1 2758569 D 83333 CDS NP_417116.1 16130545 947111 complement(2759373..2761562) 1 NC_000913.2 CP4-57 prophage; conserved protein 2761562 yfjK 947111 yfjK Escherichia coli K12 CP4-57 prophage; conserved protein NP_417116.1 2759373 R 83333 CDS NP_417117.1 16130546 947110 complement(2761559..2763175) 1 NC_000913.2 CP4-57 prophage; predicted protein 2763175 yfjL 947110 yfjL Escherichia coli K12 CP4-57 prophage; predicted protein NP_417117.1 2761559 R 83333 CDS NP_417118.1 16130547 947108 complement(2763535..2763798) 1 NC_000913.2 CP4-57 prophage; predicted protein 2763798 yfjM 947108 yfjM Escherichia coli K12 CP4-57 prophage; predicted protein NP_417118.1 2763535 R 83333 CDS NP_417119.1 16130548 947107 2763940..2765013 1 NC_000913.2 putative cell division protein; CP4-57 prophage; RNase LS 2765013 rnlA 947107 rnlA Escherichia coli K12 CP4-57 prophage; RNase LS NP_417119.1 2763940 D 83333 CDS NP_417120.2 90111470 947113 2765006..2765377 1 NC_000913.2 CP4-57 prophage; predicted protein 2765377 yfjO 947113 yfjO Escherichia coli K12 CP4-57 prophage; predicted protein NP_417120.2 2765006 D 83333 CDS YP_026173.1 49176249 947124 2765732..2766595 1 NC_000913.2 putative GTP-binding protein; CP4-57 prophage; predicted GTP-binding protein 2766595 yfjP 947124 yfjP Escherichia coli K12 CP4-57 prophage; predicted GTP-binding protein YP_026173.1 2765732 D 83333 CDS NP_417122.1 16130551 947127 2766687..2767508 1 NC_000913.2 CP4-57 prophage; predicted protein 2767508 yfjQ 947127 yfjQ Escherichia coli K12 CP4-57 prophage; predicted protein NP_417122.1 2766687 D 83333 CDS NP_417123.1 16130552 947309 2767725..2768426 1 NC_000913.2 CP4-57 prophage; predicted DNA-binding transcriptional regulator 2768426 yfjR 947309 yfjR Escherichia coli K12 CP4-57 prophage; predicted DNA-binding transcriptional regulator NP_417123.1 2767725 D 83333 CDS YP_026174.2 90111471 2847710 2768467..2768703 1 NC_000913.2 CP4-57 prophage; predicted inner membrane protein 2768703 ypjK 2847710 ypjK Escherichia coli K12 CP4-57 prophage; predicted inner membrane protein YP_026174.2 2768467 D 83333 CDS NP_417124.4 90111472 945668 2768703..2769146 1 NC_000913.2 CP4-57 prophage; predicted protein 2769146 yfjS 945668 yfjS Escherichia coli K12 CP4-57 prophage; predicted protein NP_417124.4 2768703 D 83333 CDS NP_417125.1 16130554 947616 2769170..2769637 1 NC_000913.2 CP4-57 prophage; predicted protein 2769637 yfjT 947616 yfjT Escherichia coli K12 CP4-57 prophage; predicted protein NP_417125.1 2769170 D 83333 CDS b2638 945062 complement(2770024..2770176) 1 NC_000913.2 CP4-57 prophage; conserved protein; 2770176 yfjU 945062 yfjU Escherichia coli K12 2770024 R 83333 CDS b2641 947563 complement(join(2770189..2771088,2771088..2771204)) 1 NC_000913.2 pseudogene, CP4-57 prophage putative pump protein; 2771204 yfjV 947563 yfjV Escherichia coli K12 2770189 R 83333 CDS NP_417129.1 16130557 947128 2771340..2773043 1 NC_000913.2 CP4-57 prophage; predicted inner membrane protein 2773043 yfjW 947128 yfjW Escherichia coli K12 CP4-57 prophage; predicted inner membrane protein NP_417129.1 2771340 D 83333 CDS b4644 5625570 join(2773567..2773746,2773746..2773838) 1 NC_000913.2 pseudogene, CP4-57 putative prophage remnant; 2773838 ypjI 5625570 ypjI Escherichia coli K12 2773567 D 83333 CDS NP_417130.1 16130558 947126 2773941..2774399 1 NC_000913.2 CP4-57 prophage; predicted antirestriction protein 2774399 yfjX 947126 yfjX Escherichia coli K12 CP4-57 prophage; predicted antirestriction protein NP_417130.1 2773941 D 83333 CDS NP_417131.1 16130559 947125 2774408..2774890 1 NC_000913.2 putative DNA repair protein; CP4-57 prophage; predicted DNA repair protein 2774890 yfjY 947125 yfjY Escherichia coli K12 CP4-57 prophage; predicted DNA repair protein NP_417131.1 2774408 D 83333 CDS YP_588466.1 94541123 1450287 2774899..2775099 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 2775099 ypjJ 1450287 ypjJ Escherichia coli K12 predicted protein YP_588466.1 2774899 D 83333 CDS NP_417132.1 16130560 947123 2775137..2775454 1 NC_000913.2 CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system 2775454 yfjZ 947123 yfjZ Escherichia coli K12 CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system NP_417132.1 2775137 D 83333 CDS NP_417133.1 16130561 947131 2775475..2775804 1 NC_000913.2 CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system 2775804 ypjF 947131 ypjF Escherichia coli K12 CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system NP_417133.1 2775475 D 83333 CDS NP_417134.2 90111474 948630 complement(2776168..2780748) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; adhesin-like autotransporter 2780748 ypjA 948630 ypjA Escherichia coli K12 adhesin-like autotransporter NP_417134.2 2776168 R 83333 CDS b2648 947250 complement(2781087..2781326) 1 NC_000913.2 pseudogene, predicted invertase fragment; 2781326 pinH 947250 pinH Escherichia coli K12 2781087 R 83333 CDS b2650 947640 complement(2781660..2783033) 1 NC_000913.2 predicted protein; 2783033 ypjC 947640 ypjC Escherichia coli K12 2781660 R 83333 CDS b4462 2847762 2784419..2786671 1 NC_000913.2 predicted protein putative enzyme; 2786671 ygaQ 2847762 ygaQ Escherichia coli K12 2784419 D 83333 CDS NP_417145.4 90111476 948076 2787007..2787984 1 NC_000913.2 predicted protein 2787984 csiD 948076 csiD Escherichia coli K12 predicted protein NP_417145.4 2787007 D 83333 CDS NP_417146.2 90111477 948069 2788004..2789272 1 NC_000913.2 predicted enzyme 2789272 ygaF 948069 ygaF Escherichia coli K12 predicted enzyme NP_417146.2 2788004 D 83333 CDS NP_417147.1 16130575 948060 2789295..2790743 1 NC_000913.2 succinate-semialdehyde dehydrogenase, NADP-dependent activity; GO_process: gamma-aminobutyric acid catabolic process [goid 0009450]; GO_process: putrescine catabolic process [goid 0009447]; succinate-semialdehyde dehydrogenase I, NADP-dependent 2790743 gabD 948060 gabD Escherichia coli K12 succinate-semialdehyde dehydrogenase I, NADP-dependent NP_417147.1 2789295 D 83333 CDS NP_417148.1 16130576 948067 2790757..2792037 1 NC_000913.2 4-aminobutyrate aminotransferase activity; GO_process: gamma-aminobutyric acid catabolic process [goid 0009450]; GO_process: putrescine catabolic process [goid 0009447]; 4-aminobutyrate aminotransferase, PLP-dependent 2792037 gabT 948067 gabT Escherichia coli K12 4-aminobutyrate aminotransferase, PLP-dependent NP_417148.1 2790757 D 83333 CDS NP_417149.1 16130577 948049 2792275..2793675 1 NC_000913.2 transport permease protein of gamma-aminobutyrate; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; gamma-aminobutyrate transporter 2793675 gabP 948049 gabP Escherichia coli K12 gamma-aminobutyrate transporter NP_417149.1 2792275 D 83333 CDS NP_417150.4 90111478 948055 2793696..2794358 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 2794358 csiR 948055 csiR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417150.4 2793696 D 83333 CDS NP_417151.1 16130579 947144 complement(2794359..2794808) 1 NC_000913.2 predicted protein 2794808 ygaU 947144 ygaU Escherichia coli K12 predicted protein NP_417151.1 2794359 R 83333 CDS NP_417152.1 16130580 947138 complement(2794892..2795050) 1 NC_000913.2 predicted membrane protein 2795050 yqaE 947138 yqaE Escherichia coli K12 predicted membrane protein NP_417152.1 2794892 R 83333 CDS NP_417153.1 16130581 947136 2795233..2795532 1 NC_000913.2 predicted DNA-binding transcriptional regulator 2795532 ygaV 947136 ygaV Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417153.1 2795233 D 83333 CDS NP_417154.1 16130582 947135 2795542..2796066 1 NC_000913.2 predicted inner membrane protein with hydrolase activity 2796066 ygaP 947135 ygaP Escherichia coli K12 predicted inner membrane protein with hydrolase activity NP_417154.1 2795542 D 83333 CDS NP_417155.1 16130583 947130 complement(2796113..2796517) 1 NC_000913.2 DNA-binding protein; H-NS-like protein; chaperone activity; RNA splicing?; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; DNA binding protein, nucleoid-associated 2796517 stpA 947130 stpA Escherichia coli K12 DNA binding protein, nucleoid-associated NP_417155.1 2796113 R 83333 CDS NP_417156.1 16130584 947147 2797186..2797635 1 NC_000913.2 predicted inner membrane protein 2797635 ygaW 947147 ygaW Escherichia coli K12 predicted inner membrane protein NP_417156.1 2797186 D 83333 CDS NP_417157.1 16130585 947156 complement(2797672..2798016) 1 NC_000913.2 predicted protein 2798016 ygaC 947156 ygaC Escherichia coli K12 predicted protein NP_417157.1 2797672 R 83333 CDS NP_417158.3 49176257 947157 2798156..2798497 1 NC_000913.2 predicted protein 2798497 ygaM 947157 ygaM Escherichia coli K12 predicted protein NP_417158.3 2798156 D 83333 CDS NP_417159.1 16130587 947161 2798745..2798990 1 NC_000913.2 glutaredoxin-like protein; hydrogen donor; glutaredoxin-like protein 2798990 nrdH 947161 nrdH Escherichia coli K12 glutaredoxin-like protein NP_417159.1 2798745 D 83333 CDS NP_417160.1 16130588 947158 2798987..2799397 1 NC_000913.2 protein that stimulates ribonucleotide reduction 2799397 nrdI 947158 nrdI Escherichia coli K12 protein that stimulates ribonucleotide reduction NP_417160.1 2798987 D 83333 CDS NP_417161.1 16130589 947155 2799370..2801514 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside-diphosphate reductase 2, alpha subunit 2801514 nrdE 947155 nrdE Escherichia coli K12 ribonucleoside-diphosphate reductase 2, alpha subunit NP_417161.1 2799370 D 83333 CDS NP_417162.1 16130590 947149 2801524..2802483 1 NC_000913.2 ribonucleoside-diphosphate reductase 2, beta chain, frag; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein 2802483 nrdF 947149 nrdF Escherichia coli K12 ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein NP_417162.1 2801524 D 83333 CDS NP_417163.1 16130591 947148 2802837..2804039 1 NC_000913.2 ATP-binding component of transport system for glycine, betaine and proline; GO_component: cytoplasm [goid 0005737]; GO_function: glycine betaine/proline porter activity [goid 0015596]; GO_process: proline biosynthetic process [goid 0006561]; glycine betaine transporter subunit 2804039 proV 947148 proV Escherichia coli K12 glycine betaine transporter subunit NP_417163.1 2802837 D 83333 CDS NP_417164.1 16130592 947145 2804032..2805096 1 NC_000913.2 high-affinity transport system for glycine betaine and proline; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: glycine betaine/proline porter activity [goid 0015596]; GO_process: proline biosynthetic process [goid 0006561]; glycine betaine transporter subunit 2805096 proW 947145 proW Escherichia coli K12 glycine betaine transporter subunit NP_417164.1 2804032 D 83333 CDS NP_417165.1 16130593 947165 2805154..2806146 1 NC_000913.2 high-affinity transport system for glycine betaine and proline; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_function: glycine betaine/proline porter activity [goid 0015596]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: proline biosynthetic process [goid 0006561]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: betaine biosynthetic process [goid 0006578]; GO_process: response to osmotic stress [goid 0006970]; glycine betaine transporter subunit 2806146 proX 947165 proX Escherichia coli K12 glycine betaine transporter subunit NP_417165.1 2805154 D 83333 CDS b2681 2847696 2806338..2807515 1 NC_000913.2 predicted transporter (pseudogene);putative transport; Not classified putative transport protein; GO_process: response to stress [goid 0006950]; 2807515 ygaY 2847696 ygaY Escherichia coli K12 2806338 D 83333 CDS NP_417167.1 16130594 945093 2807639..2808376 1 NC_000913.2 predicted transporter 2808376 ygaZ 945093 ygaZ Escherichia coli K12 predicted transporter NP_417167.1 2807639 D 83333 CDS NP_417168.1 16130595 945111 2808366..2808701 1 NC_000913.2 predicted inner membrane protein 2808701 ygaH 945111 ygaH Escherichia coli K12 predicted inner membrane protein NP_417168.1 2808366 D 83333 CDS NP_417169.1 16130596 945282 2808792..2809322 1 NC_000913.2 regulator of plasmid mcrB operon (microcin B17 synthesis); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux 2809322 mprA 945282 mprA Escherichia coli K12 DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux NP_417169.1 2808792 D 83333 CDS NP_417170.1 16130597 947166 2809449..2810621 1 NC_000913.2 multidrug resistance secretion protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system 2810621 emrA 947166 emrA Escherichia coli K12 multidrug efflux system NP_417170.1 2809449 D 83333 CDS NP_417171.1 16130598 947167 2810638..2812176 1 NC_000913.2 multidrug resistance; probably membrane translocase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 2812176 emrB 947167 emrB Escherichia coli K12 multidrug efflux system protein NP_417171.1 2810638 D 83333 CDS NP_417172.1 16130599 947168 complement(2812240..2812755) 1 NC_000913.2 S-ribosylhomocysteinase 2812755 luxS 947168 luxS Escherichia coli K12 S-ribosylhomocysteinase NP_417172.1 2812240 R 83333 CDS NP_417173.1 16130600 944881 complement(2812905..2814461) 1 NC_000913.2 GO_process: glutathione biosynthetic process [goid 0006750]; gamma-glutamate-cysteine ligase 2814461 gshA 944881 gshA Escherichia coli K12 gamma-glutamate-cysteine ligase NP_417173.1 2812905 R 83333 CDS NP_417174.1 16130601 945419 complement(2814534..2814962) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 2814962 yqaA 945419 yqaA Escherichia coli K12 conserved inner membrane protein NP_417174.1 2814534 R 83333 CDS NP_417175.1 16130602 945776 complement(2814959..2815525) 1 NC_000913.2 putative phosphatase; predicted hydrolase 2815525 yqaB 945776 yqaB Escherichia coli K12 predicted hydrolase NP_417175.1 2814959 R 83333 CDS NP_417176.1 16130603 947176 complement(2816983..2817168) 1 NC_000913.2 carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; GO_process: RNA catabolic process [goid 0006401]; GO_process: translational attenuation [goid 0009386]; GO_process: taxis [goid 0042330]; pleiotropic regulatory protein for carbon source metabolism 2817168 csrA 947176 csrA Escherichia coli K12 pleiotropic regulatory protein for carbon source metabolism NP_417176.1 2816983 R 83333 CDS NP_417177.1 16130604 947175 complement(2817403..2820033) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; alanyl-tRNA synthetase 2820033 alaS 947175 alaS Escherichia coli K12 alanyl-tRNA synthetase NP_417177.1 2817403 R 83333 CDS NP_417178.1 16130605 947172 complement(2820161..2820661) 1 NC_000913.2 regulator, OraA protein; regulatory protein for RecA 2820661 recX 947172 recX Escherichia coli K12 regulatory protein for RecA NP_417178.1 2820161 R 83333 CDS NP_417179.1 16130606 947170 complement(2820730..2821791) 1 NC_000913.2 DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: DNA recombination [goid 0006310]; GO_process: DNA repair [goid 0006281]; GO_process: proteolysis [goid 0006508]; GO_process: SOS response [goid 0009432]; DNA strand exchange and recombination protein with protease and nuclease activity 2821791 recA 947170 recA Escherichia coli K12 DNA strand exchange and recombination protein with protease and nuclease activity NP_417179.1 2820730 R 83333 CDS NP_417180.1 16130607 947169 complement(2821871..2822368) 1 NC_000913.2 conserved protein 2822368 ygaD 947169 ygaD Escherichia coli K12 conserved protein NP_417180.1 2821871 R 83333 CDS NP_417181.1 16130608 947184 complement(2822513..2823598) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; membrane-bound lytic murein transglycosylase B 2823598 mltB 947184 mltB Escherichia coli K12 membrane-bound lytic murein transglycosylase B NP_417181.1 2822513 R 83333 CDS YP_026180.1 49176260 947575 2823854..2824417 1 NC_000913.2 PTS system, glucitol/sorbitol-specific IIC component, one of two; GO_process: carbohydrate catabolic process [goid 0016052]; glucitol/sorbitol-specific enzyme IIC component of PTS 2824417 srlA 947575 srlA Escherichia coli K12 glucitol/sorbitol-specific enzyme IIC component of PTS YP_026180.1 2823854 D 83333 CDS YP_026181.1 49176261 948933 2824414..2825373 1 NC_000913.2 PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components; GO_process: carbohydrate catabolic process [goid 0016052]; glucitol/sorbitol-specific enzyme IIB component of PTS 2825373 srlE 948933 srlE Escherichia coli K12 glucitol/sorbitol-specific enzyme IIB component of PTS YP_026181.1 2824414 D 83333 CDS NP_417184.1 16130611 948971 2825384..2825755 1 NC_000913.2 PTS system, glucitol/sorbitol-specific enzyme IIA component; GO_process: carbohydrate catabolic process [goid 0016052]; glucitol/sorbitol-specific enzyme IIA component of PTS 2825755 srlB 948971 srlB Escherichia coli K12 glucitol/sorbitol-specific enzyme IIA component of PTS NP_417184.1 2825384 D 83333 CDS NP_417185.1 16130612 948937 2825759..2826538 1 NC_000913.2 glucitol (sorbitol)-6-phosphate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; sorbitol-6-phosphate dehydrogenase 2826538 srlD 948937 srlD Escherichia coli K12 sorbitol-6-phosphate dehydrogenase NP_417185.1 2825759 D 83333 CDS NP_417186.1 16130613 948938 2826643..2827002 1 NC_000913.2 glucitol operon activator; GO_process: carbohydrate catabolic process [goid 0016052]; DNA-binding transcriptional activator of glucitol operon 2827002 gutM 948938 gutM Escherichia coli K12 DNA-binding transcriptional activator of glucitol operon NP_417186.1 2826643 D 83333 CDS NP_417187.1 16130614 948942 2827069..2827842 1 NC_000913.2 regulator for gut (srl), glucitol operon; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-bindng transcriptional repressor 2827842 srlR 948942 srlR Escherichia coli K12 DNA-bindng transcriptional repressor NP_417187.1 2827069 D 83333 CDS NP_417188.4 90111480 947587 2827835..2828800 1 NC_000913.2 predicted phosphosugar-binding protein 2828800 gutQ 947587 gutQ Escherichia coli K12 predicted phosphosugar-binding protein NP_417188.4 2827835 D 83333 CDS NP_417189.2 90111481 947186 complement(2828797..2830311) 1 NC_000913.2 putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 2830311 norR 947186 norR Escherichia coli K12 DNA-binding transcriptional activator NP_417189.2 2828797 R 83333 CDS NP_417190.1 16130617 948979 2830498..2831937 1 NC_000913.2 putative flavodoxin; GO_function: electron carrier activity [goid 0009055]; flavorubredoxin oxidoreductase 2831937 norV 948979 norV Escherichia coli K12 flavorubredoxin oxidoreductase NP_417190.1 2830498 D 83333 CDS NP_417191.1 16130618 947088 2831934..2833067 1 NC_000913.2 putative oxidoreductase; NADH:flavorubredoxin oxidoreductase 2833067 norW 947088 norW Escherichia coli K12 NADH:flavorubredoxin oxidoreductase NP_417191.1 2831934 D 83333 CDS NP_417192.1 16130619 944963 complement(2833195..2835447) 1 NC_000913.2 transcriptional regulatory protein; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases 2835447 hypF 944963 hypF Escherichia coli K12 carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases NP_417192.1 2833195 R 83333 CDS NP_417193.1 16130620 947190 complement(2835600..2836127) 1 NC_000913.2 involved in electron transport from formate to hydrogen, Fe-S centers; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit 2836127 hydN 947190 hydN Escherichia coli K12 formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit NP_417193.1 2835600 R 83333 CDS NP_417194.1 16130621 947305 complement(2836276..2837289) 1 NC_000913.2 ascBF operon repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 2837289 ascG 947305 ascG Escherichia coli K12 DNA-binding transcriptional repressor NP_417194.1 2836276 R 83333 CDS YP_026182.1 49176263 947154 2837546..2839003 1 NC_000913.2 PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component 2839003 ascF 947154 ascF Escherichia coli K12 fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component YP_026182.1 2837546 D 83333 CDS NP_417196.1 16130623 947460 2839012..2840436 1 NC_000913.2 6-phospho-beta-glucosidase; cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic 6-phospho-beta-glucosidase 2840436 ascB 947460 ascB Escherichia coli K12 cryptic 6-phospho-beta-glucosidase NP_417196.1 2839012 D 83333 CDS NP_417197.1 16130624 947428 complement(2840595..2841065) 1 NC_000913.2 protease involved in processing C-terminal end of the large subunit of hydrogenase 3; GO_process: protein folding [goid 0006457]; protease involved in processing C-terminal end of HycE 2841065 hycI 947428 hycI Escherichia coli K12 protease involved in processing C-terminal end of HycE NP_417197.1 2840595 R 83333 CDS NP_417198.1 16130625 947438 complement(2841058..2841468) 1 NC_000913.2 processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex); GO_process: fermentation [goid 0006113]; protein required for maturation of hydrogenase 3 2841468 hycH 947438 hycH Escherichia coli K12 protein required for maturation of hydrogenase 3 NP_417198.1 2841058 R 83333 CDS NP_417199.1 16130626 947191 complement(2841465..2842232) 1 NC_000913.2 hydrogenase activity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 3 and formate hydrogenase complex, HycG subunit 2842232 hycG 947191 hycG Escherichia coli K12 hydrogenase 3 and formate hydrogenase complex, HycG subunit NP_417199.1 2841465 R 83333 CDS NP_417200.1 16130627 947048 complement(2842232..2842774) 1 NC_000913.2 probable iron-sulfur protein of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; formate hydrogenlyase complex iron-sulfur protein 2842774 hycF 947048 hycF Escherichia coli K12 formate hydrogenlyase complex iron-sulfur protein NP_417200.1 2842232 R 83333 CDS NP_417201.1 16130628 947396 complement(2842784..2844493) 1 NC_000913.2 large subunit of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 3, large subunit 2844493 hycE 947396 hycE Escherichia coli K12 hydrogenase 3, large subunit NP_417201.1 2842784 R 83333 CDS NP_417202.1 16130629 948994 complement(2844511..2845434) 1 NC_000913.2 membrane-spanning protein of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; hydrogenase 3, membrane subunit 2845434 hycD 948994 hycD Escherichia coli K12 hydrogenase 3, membrane subunit NP_417202.1 2844511 R 83333 CDS NP_417203.1 16130630 945327 complement(2845437..2847263) 1 NC_000913.2 membrane-spanning protein of hydrogenase 3 (part of FHL complex); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; hydrogenase 3, membrane subunit 2847263 hycC 945327 hycC Escherichia coli K12 hydrogenase 3, membrane subunit NP_417203.1 2845437 R 83333 CDS NP_417204.1 16130631 948002 complement(2847260..2847871) 1 NC_000913.2 probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex); GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 3, Fe-S subunit 2847871 hycB 948002 hycB Escherichia coli K12 hydrogenase 3, Fe-S subunit NP_417204.1 2847260 R 83333 CDS NP_417205.1 16130632 947193 complement(2847996..2848457) 1 NC_000913.2 transcriptional repression of hyc and hyp operons; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: fermentation [goid 0006113]; GO_process: transcription [goid 0006350]; regulator of the transcriptional regulator FhlA 2848457 hycA 947193 hycA Escherichia coli K12 regulator of the transcriptional regulator FhlA NP_417205.1 2847996 R 83333 CDS NP_417206.1 16130633 947195 2848669..2849019 1 NC_000913.2 pleiotrophic effects on 3 hydrogenase isozymes; GO_process: anaerobic respiration [goid 0009061]; protein involved in nickel insertion into hydrogenases 3 2849019 hypA 947195 hypA Escherichia coli K12 protein involved in nickel insertion into hydrogenases 3 NP_417206.1 2848669 D 83333 CDS NP_417207.1 16130634 947194 2849023..2849895 1 NC_000913.2 guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3; GO_process: fermentation [goid 0006113]; GO_process: protein folding [goid 0006457]; GTP hydrolase involved in nickel liganding into hydrogenases 2849895 hypB 947194 hypB Escherichia coli K12 GTP hydrolase involved in nickel liganding into hydrogenases NP_417207.1 2849023 D 83333 CDS NP_417208.1 16130635 947192 2849886..2850158 1 NC_000913.2 pleiotrophic effects on 3 hydrogenase isozymes; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; protein required for maturation of hydrogenases 1 and 3 2850158 hypC 947192 hypC Escherichia coli K12 protein required for maturation of hydrogenases 1 and 3 NP_417208.1 2849886 D 83333 CDS NP_417209.1 16130636 947189 2850158..2851279 1 NC_000913.2 pleiotrophic effects on 3 hydrogenase isozymes; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; protein required for maturation of hydrogenases 2851279 hypD 947189 hypD Escherichia coli K12 protein required for maturation of hydrogenases NP_417209.1 2850158 D 83333 CDS NP_417210.1 16130637 947182 2851318..2852286 1 NC_000913.2 plays structural role in maturation of all 3 hydrogenases; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein 2852286 hypE 947182 hypE Escherichia coli K12 carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein NP_417210.1 2851318 D 83333 CDS NP_417211.1 16130638 947181 2852360..2854438 1 NC_000913.2 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fermentation [goid 0006113]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 2854438 fhlA 947181 fhlA Escherichia coli K12 DNA-binding transcriptional activator NP_417211.1 2852360 D 83333 CDS NP_417212.1 16130639 947187 complement(2854475..2854828) 1 NC_000913.2 predicted protein 2854828 ygbA 947187 ygbA Escherichia coli K12 predicted protein NP_417212.1 2854475 R 83333 CDS NP_417213.1 16130640 947206 2855115..2857676 1 NC_000913.2 methyl-directed mismatch repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; methyl-directed mismatch repair protein 2857676 mutS 947206 mutS Escherichia coli K12 methyl-directed mismatch repair protein NP_417213.1 2855115 D 83333 CDS NP_417214.1 16130641 947196 2857782..2858438 1 NC_000913.2 protein phosphatase 2; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; serine/threonine-specific protein phosphatase 2 2858438 pphB 947196 pphB Escherichia coli K12 serine/threonine-specific protein phosphatase 2 NP_417214.1 2857782 D 83333 CDS NP_417215.1 16130642 947204 complement(2858489..2859286) 1 NC_000913.2 putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 2859286 ygbI 947204 ygbI Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417215.1 2858489 R 83333 CDS NP_417216.1 16130643 947200 2859452..2860360 1 NC_000913.2 putative dehydrogenase; predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain 2860360 ygbJ 947200 ygbJ Escherichia coli K12 predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain NP_417216.1 2859452 D 83333 CDS NP_417217.1 16130644 947199 2860357..2861523 1 NC_000913.2 conserved protein 2861523 ygbK 947199 ygbK Escherichia coli K12 conserved protein NP_417217.1 2860357 D 83333 CDS NP_417218.1 16130645 947197 2861615..2862253 1 NC_000913.2 putative epimerase/aldolase; predicted class II aldolase 2862253 ygbL 947197 ygbL Escherichia coli K12 predicted class II aldolase NP_417218.1 2861615 D 83333 CDS NP_417219.1 16130646 947207 2862258..2863034 1 NC_000913.2 conserved protein 2863034 ygbM 947207 ygbM Escherichia coli K12 conserved protein NP_417219.1 2862258 D 83333 CDS NP_417220.1 16130647 947208 2863123..2864487 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2864487 ygbN 947208 ygbN Escherichia coli K12 predicted transporter NP_417220.1 2863123 D 83333 CDS NP_417221.1 16130648 947210 complement(2864581..2865573) 1 NC_000913.2 RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; RNA polymerase, sigma S (sigma 38) factor 2865573 rpoS 947210 rpoS Escherichia coli K12 RNA polymerase, sigma S (sigma 38) factor NP_417221.1 2864581 R 83333 CDS NP_417222.1 16130649 947011 complement(2865636..2866775) 1 NC_000913.2 lipoprotein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane lipoprotein 2866775 nlpD 947011 nlpD Escherichia coli K12 predicted outer membrane lipoprotein NP_417222.1 2865636 R 83333 CDS NP_417223.1 16130650 944923 complement(2866915..2867541) 1 NC_000913.2 GO_process: protein modification [goid 0006464]; L-isoaspartate protein carboxylmethyltransferase type II 2867541 pcm 944923 pcm Escherichia coli K12 L-isoaspartate protein carboxylmethyltransferase type II NP_417223.1 2866915 R 83333 CDS NP_417224.1 16130651 947211 complement(2867535..2868296) 1 NC_000913.2 survival protein; GO_process: response to stress [goid 0006950]; broad specificity 5'(3')-nucleotidase and polyphosphatase 2868296 surE 947211 surE Escherichia coli K12 broad specificity 5'(3')-nucleotidase and polyphosphatase NP_417224.1 2867535 R 83333 CDS NP_417225.1 16130652 947214 complement(2868277..2869326) 1 NC_000913.2 putative hydrogenase subunit; pseudoruidine synthase 2869326 truD 947214 truD Escherichia coli K12 pseudoruidine synthase NP_417225.1 2868277 R 83333 CDS NP_417226.1 16130653 945057 complement(2869323..2869802) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2869802 ispF 945057 ispF Escherichia coli K12 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase NP_417226.1 2869323 R 83333 CDS NP_417227.1 16130654 948269 complement(2869802..2870512) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2870512 ispD 948269 ispD Escherichia coli K12 4-diphosphocytidyl-2C-methyl-D-erythritol synthase NP_417227.1 2869802 R 83333 CDS NP_417228.1 16130655 946033 complement(2870531..2870842) 1 NC_000913.2 cell division protein 2870842 ftsB 946033 ftsB Escherichia coli K12 cell division protein NP_417228.1 2870531 R 83333 CDS NP_417229.1 16130656 947268 complement(2871036..2871359) 1 NC_000913.2 putative cytochrome oxidase subunit; conserved inner membrane protein 2871359 ygbE 947268 ygbE Escherichia coli K12 conserved inner membrane protein NP_417229.1 2871036 R 83333 CDS NP_417230.1 16130657 947221 complement(2871409..2872014) 1 NC_000913.2 GO_process: sulfur metabolic process [goid 0006790]; adenosine 5'-phosphosulfate kinase 2872014 cysC 947221 cysC Escherichia coli K12 adenosine 5'-phosphosulfate kinase NP_417230.1 2871409 R 83333 CDS NP_417231.1 16130658 947219 complement(2872014..2873441) 1 NC_000913.2 ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase; GO_process: sulfur metabolic process [goid 0006790]; sulfate adenylyltransferase, subunit 1 2873441 cysN 947219 cysN Escherichia coli K12 sulfate adenylyltransferase, subunit 1 NP_417231.1 2872014 R 83333 CDS NP_417232.1 16130659 947217 complement(2873443..2874351) 1 NC_000913.2 ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2; GO_process: sulfur metabolic process [goid 0006790]; sulfate adenylyltransferase, subunit 2 2874351 cysD 947217 cysD Escherichia coli K12 sulfate adenylyltransferase, subunit 2 NP_417232.1 2873443 R 83333 CDS NP_417233.1 16130660 947215 2874603..2875640 1 NC_000913.2 GO_process: protein modification [goid 0006464]; aminopeptidase in alkaline phosphatase isozyme conversion 2875640 iap 947215 iap Escherichia coli K12 aminopeptidase in alkaline phosphatase isozyme conversion NP_417233.1 2874603 D 83333 CDS NP_417234.2 90111482 947213 complement(2876591..2876875) 1 NC_000913.2 predicted protein 2876875 ygbF 947213 ygbF Escherichia coli K12 predicted protein NP_417234.2 2876591 R 83333 CDS NP_417235.1 16130662 947228 complement(2876877..2877794) 1 NC_000913.2 conserved protein 2877794 ygbT 947228 ygbT Escherichia coli K12 conserved protein NP_417235.1 2876877 R 83333 CDS NP_417236.1 16130663 947226 complement(2877810..2878409) 1 NC_000913.2 predicted protein 2878409 ygcH 947226 ygcH Escherichia coli K12 predicted protein NP_417236.1 2877810 R 83333 CDS NP_417237.2 90111483 947225 complement(2878396..2879070) 1 NC_000913.2 predicted protein 2879070 ygcI 947225 ygcI Escherichia coli K12 predicted protein NP_417237.2 2878396 R 83333 CDS NP_417238.1 16130665 947224 complement(2879073..2880164) 1 NC_000913.2 predicted protein 2880164 ygcJ 947224 ygcJ Escherichia coli K12 predicted protein NP_417238.1 2879073 R 83333 CDS NP_417239.1 16130666 947223 complement(2880177..2880659) 1 NC_000913.2 predicted protein 2880659 ygcK 947223 ygcK Escherichia coli K12 predicted protein NP_417239.1 2880177 R 83333 CDS NP_417240.1 16130667 947222 complement(2880652..2882160) 1 NC_000913.2 predicted protein 2882160 ygcL 947222 ygcL Escherichia coli K12 predicted protein NP_417240.1 2880652 R 83333 CDS NP_417241.1 16130668 947229 complement(2882575..2885241) 1 NC_000913.2 conserved protein, member of DEAD box family 2885241 ygcB 947229 ygcB Escherichia coli K12 conserved protein, member of DEAD box family NP_417241.1 2882575 R 83333 CDS NP_417242.1 16130669 947230 complement(2885600..2886334) 1 NC_000913.2 GO_process: sulfur metabolic process [goid 0006790]; 3'-phosphoadenosine 5'-phosphosulfate reductase 2886334 cysH 947230 cysH Escherichia coli K12 3'-phosphoadenosine 5'-phosphosulfate reductase NP_417242.1 2885600 R 83333 CDS NP_417243.1 16130670 947231 complement(2886409..2888121) 1 NC_000913.2 sulfite reductase, alpha subunit; GO_process: sulfur metabolic process [goid 0006790]; sulfite reductase, beta subunit, NAD(P)-binding, heme-binding 2888121 cysI 947231 cysI Escherichia coli K12 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding NP_417243.1 2886409 R 83333 CDS NP_417244.1 16130671 947239 complement(2888121..2889920) 1 NC_000913.2 sulfite reductase (NADPH), flavoprotein beta subunit; GO_process: sulfur metabolic process [goid 0006790]; sulfite reductase, alpha subunit, flavoprotein 2889920 cysJ 947239 cysJ Escherichia coli K12 sulfite reductase, alpha subunit, flavoprotein NP_417244.1 2888121 R 83333 CDS NP_417245.1 16130672 945123 2890236..2890601 1 NC_000913.2 putative 6-pyruvoyl tetrahydrobiopterin synthase; 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) 2890601 sscR 945123 sscR Escherichia coli K12 6-pyruvoyl tetrahydrobiopterin synthase (PTPS) NP_417245.1 2890236 D 83333 CDS NP_417246.4 90111484 946114 2890679..2891950 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; predicted oxidoreductase with FAD/NAD(P)-binding domain 2891950 ygcN 946114 ygcN Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain NP_417246.4 2890679 D 83333 CDS NP_417247.2 90111485 945120 2891941..2892201 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; predicted 4Fe-4S cluster-containing protein 2892201 ygcO 945120 ygcO Escherichia coli K12 predicted 4Fe-4S cluster-containing protein NP_417247.2 2891941 D 83333 CDS NP_417248.1 16130675 947536 2892218..2892793 1 NC_000913.2 putative anti-terminator regulatory protein; predicted anti-terminator regulatory protein 2892793 ygcP 947536 ygcP Escherichia coli K12 predicted anti-terminator regulatory protein NP_417248.1 2892218 D 83333 CDS NP_417249.4 90111486 946413 complement(2892941..2893801) 1 NC_000913.2 putative flavoprotein; GO_function: electron carrier activity [goid 0009055]; predicted flavoprotein 2893801 ygcQ 946413 ygcQ Escherichia coli K12 predicted flavoprotein NP_417249.4 2892941 R 83333 CDS NP_417250.4 90111487 947240 complement(2893798..2894577) 1 NC_000913.2 putative transport protein; GO_function: electron carrier activity [goid 0009055]; predicted flavoprotein 2894577 ygcR 947240 ygcR Escherichia coli K12 predicted flavoprotein NP_417250.4 2893798 R 83333 CDS NP_417251.2 90111488 947238 complement(2894555..2895892) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2895892 ygcS 947238 ygcS Escherichia coli K12 predicted transporter NP_417251.2 2894555 R 83333 CDS YP_026183.1 49176267 2847709 complement(2895986..2897440) 1 NC_000913.2 predicted FAD containing dehydrogenase 2897440 ygcU 2847709 ygcU Escherichia coli K12 predicted FAD containing dehydrogenase YP_026183.1 2895986 R 83333 CDS NP_417254.4 90111489 947232 complement(2897510..2898295) 1 NC_000913.2 putative oxidoreductase; predicted deoxygluconate dehydrogenase 2898295 ygcW 947232 ygcW Escherichia coli K12 predicted deoxygluconate dehydrogenase NP_417254.4 2897510 R 83333 CDS NP_417255.1 16130682 947248 2898614..2899891 1 NC_000913.2 putative transport protein; predicted transporter 2899891 yqcE 947248 yqcE Escherichia coli K12 predicted transporter NP_417255.1 2898614 D 83333 CDS NP_417256.1 16130683 946193 2899918..2901396 1 NC_000913.2 putative kinase; predicted kinase 2901396 ygcE 946193 ygcE Escherichia coli K12 predicted kinase NP_417256.1 2899918 D 83333 CDS NP_417257.1 16130684 947527 complement(2902769..2903440) 1 NC_000913.2 GO_process: coenzyme and prosthetic group biosynthetic process [goid 0046138]; conserved protein 2903440 ygcF 947527 ygcF Escherichia coli K12 conserved protein NP_417257.1 2902769 R 83333 CDS NP_417258.4 90111490 945247 2903733..2904605 1 NC_000913.2 predicted protein 2904605 ygcG 945247 ygcG Escherichia coli K12 predicted protein NP_417258.4 2903733 D 83333 CDS NP_417259.1 16130686 945032 complement(2904665..2905963) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: anaerobic respiration [goid 0009061]; GO_process: gluconeogenesis [goid 0006094]; enolase 2905963 eno 945032 eno Escherichia coli K12 enolase NP_417259.1 2904665 R 83333 CDS NP_417260.1 16130687 946116 complement(2906051..2907688) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; CTP synthetase 2907688 pyrG 946116 pyrG Escherichia coli K12 CTP synthetase NP_417260.1 2906051 R 83333 CDS NP_417261.1 16130688 947254 complement(2907916..2908707) 1 NC_000913.2 nucleoside triphosphate pyrophosphohydrolase 2908707 mazG 947254 mazG Escherichia coli K12 nucleoside triphosphate pyrophosphohydrolase NP_417261.1 2907916 R 83333 CDS NP_417262.1 16130689 947252 complement(2908778..2909113) 1 NC_000913.2 probable growth inhibitor, PemK-like, autoregulated; toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease 2909113 chpA 947252 chpA Escherichia coli K12 toxin of the ChpA-ChpR toxin-antitoxin system, endoribonuclease NP_417262.1 2908778 R 83333 CDS NP_417263.1 16130690 947245 complement(2909113..2909361) 1 NC_000913.2 suppressor of inhibitory function of ChpA, PemI-like, autoregulated; antitoxin of the ChpA-ChpR toxin-antitoxin system 2909361 chpR 947245 chpR Escherichia coli K12 antitoxin of the ChpA-ChpR toxin-antitoxin system NP_417263.1 2909113 R 83333 CDS NP_417264.1 16130691 947244 complement(2909439..2911673) 1 NC_000913.2 (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; (p)ppGpp synthetase I/GTP pyrophosphokinase 2911673 relA 947244 relA Escherichia coli K12 (p)ppGpp synthetase I/GTP pyrophosphokinase NP_417264.1 2909439 R 83333 CDS NP_417265.1 16130692 947243 complement(2911721..2913022) 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; 23S rRNA (uracil-5)-methyltransferase 2913022 rumA 947243 rumA Escherichia coli K12 23S rRNA (uracil-5)-methyltransferase NP_417265.1 2911721 R 83333 CDS NP_417266.1 16130693 947255 2913079..2915835 1 NC_000913.2 sensor-regulator, activates OmpR by phophorylation; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase, in two-component regulatory system with UvrY 2915835 barA 947255 barA Escherichia coli K12 hybrid sensory histidine kinase, in two-component regulatory system with UvrY NP_417266.1 2913079 D 83333 CDS NP_417267.1 16130694 947258 complement(2916067..2917407) 1 NC_000913.2 (D)-glucarate dehydratase 1 (L)-idarate dehydratase (L)-idarate epimerase (D)-glucarate epimerase; GO_process: carbohydrate catabolic process [goid 0016052]; (D)-glucarate dehydratase 1 2917407 gudD 947258 gudD Escherichia coli K12 (D)-glucarate dehydratase 1 NP_417267.1 2916067 R 83333 CDS NP_417268.1 16130695 947261 complement(2917428..2918768) 1 NC_000913.2 putative (D)-glucarate dehydratase 2; GO_process: carbohydrate catabolic process [goid 0016052]; predicted glucarate dehydratase 2918768 gudX 947261 gudX Escherichia coli K12 predicted glucarate dehydratase NP_417268.1 2917428 R 83333 CDS NP_417269.1 16130696 947265 complement(2918770..2920122) 1 NC_000913.2 putative D-glucarate permease (MFS family); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted D-glucarate transporter 2920122 gudP 947265 gudP Escherichia coli K12 predicted D-glucarate transporter NP_417269.1 2918770 R 83333 CDS NP_417270.1 16130697 947151 complement(2920557..2921006) 1 NC_000913.2 predicted flavoprotein 2921006 yqcA 947151 yqcA Escherichia coli K12 predicted flavoprotein NP_417270.1 2920557 R 83333 CDS NP_417271.1 16130698 947242 complement(2921024..2921806) 1 NC_000913.2 tRNA pseudouridine synthase 2921806 truC 947242 truC Escherichia coli K12 tRNA pseudouridine synthase NP_417271.1 2921024 R 83333 CDS NP_417272.1 16130699 946027 complement(2921806..2922135) 1 NC_000913.2 conserved protein 2922135 yqcC 946027 yqcC Escherichia coli K12 conserved protein NP_417272.1 2921806 R 83333 CDS NP_417273.1 16130700 947271 complement(2922757..2923302) 1 NC_000913.2 interacts with secY; GO_component: cytoplasm [goid 0005737]; predicted protein 2923302 syd 947271 syd Escherichia coli K12 predicted protein NP_417273.1 2922757 R 83333 CDS NP_417274.1 16130701 947270 2923370..2924218 1 NC_000913.2 conserved protein 2924218 queF 947270 queF Escherichia coli K12 conserved protein NP_417274.1 2923370 D 83333 CDS NP_417275.1 16130702 947266 2924330..2925694 1 NC_000913.2 conserved protein 2925694 ygdH 947266 ygdH Escherichia coli K12 conserved protein NP_417275.1 2924330 D 83333 CDS NP_417276.1 16130703 947264 2926251..2927540 1 NC_000913.2 probable serine transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-serine biosynthetic process [goid 0006564]; predicted serine transporter 2927540 sdaC 947264 sdaC Escherichia coli K12 predicted serine transporter NP_417276.1 2926251 D 83333 CDS NP_417277.1 16130704 947262 2927598..2928965 1 NC_000913.2 L-serine dehydratase (deaminase), L-SD2; GO_process: fatty acid oxidation [goid 0019395]; GO_process: amino acid catabolic process [goid 0009063]; L-serine deaminase II 2928965 sdaB 947262 sdaB Escherichia coli K12 L-serine deaminase II NP_417277.1 2927598 D 83333 CDS NP_417278.3 49176270 947256 2928987..2929832 1 NC_000913.2 5'-3' exonuclease; GO_process: DNA catabolic process [goid 0006308]; exonuclease IX (5'-3' exonuclease) 2929832 xni 947256 xni Escherichia coli K12 exonuclease IX (5'-3' exonuclease) NP_417278.3 2928987 D 83333 CDS NP_417279.1 16130706 947273 complement(2929887..2931038) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; L-1,2-propanediol oxidoreductase 2931038 fucO 947273 fucO Escherichia coli K12 L-1,2-propanediol oxidoreductase NP_417279.1 2929887 R 83333 CDS NP_417280.1 16130707 947282 complement(2931063..2931710) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; L-fuculose-1-phosphate aldolase 2931710 fucA 947282 fucA Escherichia coli K12 L-fuculose-1-phosphate aldolase NP_417280.1 2931063 R 83333 CDS NP_417281.1 16130708 947487 2932257..2933573 1 NC_000913.2 fucose permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; L-fucose transporter 2933573 fucP 947487 fucP Escherichia coli K12 L-fucose transporter NP_417281.1 2932257 D 83333 CDS NP_417282.1 16130709 946195 2933606..2935381 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; L-fucose isomerase 2935381 fucI 946195 fucI Escherichia coli K12 L-fucose isomerase NP_417282.1 2933606 D 83333 CDS NP_417283.1 16130710 946022 2935460..2936908 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; L-fuculokinase 2936908 fucK 946022 fucK Escherichia coli K12 L-fuculokinase NP_417283.1 2935460 D 83333 CDS NP_417284.1 16130711 945842 2936910..2937332 1 NC_000913.2 protein of fucose operon; L-fucose mutarotase 2937332 fucU 945842 fucU Escherichia coli K12 L-fucose mutarotase NP_417284.1 2936910 D 83333 CDS NP_417285.1 16130712 946905 2937390..2938121 1 NC_000913.2 positive regulator of the fuc operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 2938121 fucR 946905 fucR Escherichia coli K12 DNA-binding transcriptional activator NP_417285.1 2937390 D 83333 CDS NP_417286.1 16130713 947283 complement(2938165..2939265) 1 NC_000913.2 predicted methyltransferase 2939265 ygdE 947283 ygdE Escherichia coli K12 predicted methyltransferase NP_417286.1 2938165 R 83333 CDS NP_417287.1 16130714 947279 complement(2939258..2939653) 1 NC_000913.2 conserved inner membrane protein 2939653 ygdD 947279 ygdD Escherichia coli K12 conserved inner membrane protein NP_417287.1 2939258 R 83333 CDS NP_417288.1 16130715 947278 complement(2939672..2940589) 1 NC_000913.2 positive regulator of gcv operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 2940589 gcvA 947278 gcvA Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417288.1 2939672 R 83333 CDS NP_417289.2 90111491 947276 complement(2940940..2941167) 1 NC_000913.2 predicted protein 2941167 ygdI 947276 ygdI Escherichia coli K12 predicted protein NP_417289.2 2940940 R 83333 CDS NP_417290.1 16130717 947275 2941359..2942564 1 NC_000913.2 GO_process: sulfur metabolic process [goid 0006790]; GO_process: amino acid metabolic process [goid 0006520]; cysteine sulfinate desulfinase 2942564 csdA 947275 csdA Escherichia coli K12 cysteine sulfinate desulfinase NP_417290.1 2941359 D 83333 CDS NP_417291.1 16130718 947274 2942564..2943007 1 NC_000913.2 predicted Fe-S metabolism protein 2943007 csdE 947274 csdE Escherichia coli K12 predicted Fe-S metabolism protein NP_417291.1 2942564 D 83333 CDS NP_417292.1 16130719 947291 complement(2943058..2943864) 1 NC_000913.2 putative enzyme; conserved protein 2943864 ygdL 947291 ygdL Escherichia coli K12 conserved protein NP_417292.1 2943058 R 83333 CDS NP_417293.1 16130720 944964 complement(2944103..2945200) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; membrane-bound lytic murein transglycosylase A 2945200 mltA 944964 mltA Escherichia coli K12 membrane-bound lytic murein transglycosylase A NP_417293.1 2944103 R 83333 CDS NP_417294.4 90111492 947293 complement(2945779..2947032) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylmuramoyl-L-alanine amidase 2947032 amiC 947293 amiC Escherichia coli K12 N-acetylmuramoyl-L-alanine amidase NP_417294.4 2945779 R 83333 CDS NP_417295.1 16130722 947289 2947264..2948595 1 NC_000913.2 N-acetylglutamate synthase; amino acid acetyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase 2948595 argA 947289 argA Escherichia coli K12 fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase NP_417295.1 2947264 D 83333 CDS NP_417296.1 16130723 947287 complement(2948657..2950483) 1 NC_000913.2 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA recombination [goid 0006310]; exonuclease V (RecBCD complex), alpha chain 2950483 recD 947287 recD Escherichia coli K12 exonuclease V (RecBCD complex), alpha chain NP_417296.1 2948657 R 83333 CDS NP_417297.1 16130724 947286 complement(2950483..2954025) 1 NC_000913.2 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA recombination [goid 0006310]; exonuclease V (RecBCD complex), beta subunit 2954025 recB 947286 recB Escherichia coli K12 exonuclease V (RecBCD complex), beta subunit NP_417297.1 2950483 R 83333 CDS NP_417298.1 16130725 947284 complement(2954018..2956906) 1 NC_000913.2 protease III 2956906 ptrA 947284 ptrA Escherichia coli K12 protease III NP_417298.1 2954018 R 83333 CDS NP_417299.1 16130726 947294 complement(2957082..2960450) 1 NC_000913.2 DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease; GO_process: DNA catabolic process [goid 0006308]; GO_process: DNA recombination [goid 0006310]; exonuclease V (RecBCD complex), gamma chain 2960450 recC 947294 recC Escherichia coli K12 exonuclease V (RecBCD complex), gamma chain NP_417299.1 2957082 R 83333 CDS NP_417300.1 16130727 945797 complement(2960463..2960786) 1 NC_000913.2 prepilin peptidase dependent protein C; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; predicted protein 2960786 ppdC 945797 ppdC Escherichia coli K12 predicted protein NP_417300.1 2960463 R 83333 CDS NP_417301.4 90111493 944763 complement(2960771..2961178) 1 NC_000913.2 predicted protein 2961178 ygdB 944763 ygdB Escherichia coli K12 predicted protein NP_417301.4 2960771 R 83333 CDS NP_417302.1 16130729 948985 complement(2961175..2961738) 1 NC_000913.2 prepilin peptidase dependent protein B; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; conserved protein 2961738 ppdB 948985 ppdB Escherichia coli K12 conserved protein NP_417302.1 2961175 R 83333 CDS NP_417303.1 16130730 945393 complement(2961729..2962199) 1 NC_000913.2 prepilin peptidase dependent protein A; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; conserved protein 2962199 ppdA 945393 ppdA Escherichia coli K12 conserved protein NP_417303.1 2961729 R 83333 CDS NP_417304.1 16130731 949035 complement(2962383..2963177) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidylate synthetase 2963177 thyA 949035 thyA Escherichia coli K12 thymidylate synthetase NP_417304.1 2962383 R 83333 CDS NP_417305.1 16130732 947303 complement(2963184..2964059) 1 NC_000913.2 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; GO_process: protein modification [goid 0006464]; phosphatidylglycerol-prolipoprotein diacylglyceryl transferase 2964059 lgt 947303 lgt Escherichia coli K12 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase NP_417305.1 2963184 R 83333 CDS NP_417306.1 16130733 947301 complement(2964210..2966456) 1 NC_000913.2 PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins); GO_process: carbohydrate catabolic process [goid 0016052]; fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein 2966456 ptsP 947301 ptsP Escherichia coli K12 fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein NP_417306.1 2964210 R 83333 CDS NP_417307.1 16130734 947300 complement(2966469..2966999) 1 NC_000913.2 putative invasion protein; nucleotide hydrolase 2966999 nudH 947300 nudH Escherichia coli K12 nucleotide hydrolase NP_417307.1 2966469 R 83333 CDS YP_001165326.1 145698305 5061519 complement(2967352..2967498) 1 NC_000913.2 hypothetical protein 2967498 ygdT 5061519 ygdT Escherichia coli K12 hypothetical protein YP_001165326.1 2967352 R 83333 CDS NP_417308.1 16130735 947299 2967684..2968373 1 NC_000913.2 methyl-directed mismatch repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; methyl-directed mismatch repair protein 2968373 mutH 947299 mutH Escherichia coli K12 methyl-directed mismatch repair protein NP_417308.1 2967684 D 83333 CDS NP_417309.1 16130736 947295 2968442..2969155 1 NC_000913.2 putative transport protein; predicted inner membrane protein 2969155 ygdQ 947295 ygdQ Escherichia coli K12 predicted inner membrane protein NP_417309.1 2968442 D 83333 CDS NP_417310.1 16130737 947304 2969293..2969511 1 NC_000913.2 predicted protein 2969511 ygdR 947304 ygdR Escherichia coli K12 predicted protein NP_417310.1 2969293 D 83333 CDS NP_417311.1 16130738 947306 2969619..2970659 1 NC_000913.2 predicted oxidoreductase, NADP(H)-dependent aldo-keto reductase 2970659 tas 947306 tas Escherichia coli K12 predicted oxidoreductase, NADP(H)-dependent aldo-keto reductase NP_417311.1 2969619 D 83333 CDS NP_417312.1 16130739 947317 complement(2970691..2971884) 1 NC_000913.2 putative resistance proteins; GO_process: response to drug [goid 0042493]; predicted inner membrane protein 2971884 lplT 947317 lplT Escherichia coli K12 predicted inner membrane protein NP_417312.1 2970691 R 83333 CDS NP_417313.1 16130740 947315 complement(2971877..2974036) 1 NC_000913.2 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase 2974036 aas 947315 aas Escherichia coli K12 fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase NP_417313.1 2971877 R 83333 CDS NP_417314.1 16130741 947314 2974621..2975652 1 NC_000913.2 repressor of galETK operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 2975652 galR 947314 galR Escherichia coli K12 DNA-binding transcriptional repressor NP_417314.1 2974621 D 83333 CDS NP_417315.1 16130742 947313 complement(2975659..2976921) 1 NC_000913.2 diaminopimelate decarboxylase; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; diaminopimelate decarboxylase, PLP-binding 2976921 lysA 947313 lysA Escherichia coli K12 diaminopimelate decarboxylase, PLP-binding NP_417315.1 2975659 R 83333 CDS NP_417316.1 16130743 947311 2977043..2977978 1 NC_000913.2 positive regulator for lys; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 2977978 lysR 947311 lysR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417316.1 2977043 D 83333 CDS NP_417317.1 16130744 947348 complement(2977965..2978657) 1 NC_000913.2 putative resistance proteins; GO_process: response to drug [goid 0042493]; predicted racemase 2978657 ygeA 947348 ygeA Escherichia coli K12 predicted racemase NP_417317.1 2977965 R 83333 CDS NP_417318.1 16130745 947341 complement(2978786..2980204) 1 NC_000913.2 low-affinity L-arabinose transport system proton symport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity [goid 0015524]; GO_process: carbohydrate catabolic process [goid 0016052]; arabinose transporter 2980204 araE 947341 araE Escherichia coli K12 arabinose transporter NP_417318.1 2978786 R 83333 CDS NP_417319.1 16130746 947323 complement(2980519..2981280) 1 NC_000913.2 2-deoxy-D-gluconate 3-dehydrogenase 2981280 kduD 947323 kduD Escherichia coli K12 2-deoxy-D-gluconate 3-dehydrogenase NP_417319.1 2980519 R 83333 CDS NP_417320.1 16130747 947319 complement(2981310..2982146) 1 NC_000913.2 homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase; GO_process: carbohydrate catabolic process [goid 0016052]; predicted 5-keto 4-deoxyuronate isomerase 2982146 kduI 947319 kduI Escherichia coli K12 predicted 5-keto 4-deoxyuronate isomerase NP_417320.1 2981310 R 83333 CDS NP_417321.2 90111494 947324 complement(2982433..2983614) 1 NC_000913.2 putative acyltransferase; predicted acyltransferase 2983614 yqeF 947324 yqeF Escherichia coli K12 predicted acyltransferase NP_417321.2 2982433 R 83333 CDS NP_417322.1 16130749 945028 2983869..2985098 1 NC_000913.2 putative transporter protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 2985098 yqeG 945028 yqeG Escherichia coli K12 predicted transporter NP_417322.1 2983869 D 83333 CDS NP_417323.2 90111495 945263 2985558..2986190 1 NC_000913.2 conserved protein with bipartite regulator domain 2986190 yqeH 945263 yqeH Escherichia coli K12 conserved protein with bipartite regulator domain NP_417323.2 2985558 D 83333 CDS NP_417324.1 16130751 947327 2986524..2987333 1 NC_000913.2 putative sensory transducer; predicted transcriptional regulator 2987333 yqeI 947327 yqeI Escherichia coli K12 predicted transcriptional regulator NP_417324.1 2986524 D 83333 CDS NP_417325.4 90111496 947328 2987326..2987808 1 NC_000913.2 predicted protein 2987808 yqeJ 947328 yqeJ Escherichia coli K12 predicted protein NP_417325.4 2987326 D 83333 CDS NP_417326.2 90111497 947329 complement(2987957..2988382) 1 NC_000913.2 predicted protein 2988382 yqeK 947329 yqeK Escherichia coli K12 predicted protein NP_417326.2 2987957 R 83333 CDS b2850 946823 join(2988576..2988971,2988970..2989065) 1 NC_000913.2 predicted protein; 2989065 ygeF 946823 ygeF Escherichia coli K12 2988576 D 83333 CDS NP_417328.1 16130755 946986 2989290..2989781 1 NC_000913.2 predicted chaperone 2989781 ygeG 946986 ygeG Escherichia coli K12 predicted chaperone NP_417328.1 2989290 D 83333 CDS NP_417329.1 16130756 946265 2990116..2991492 1 NC_000913.2 putative invasion protein; predictedtranscriptional regulator 2991492 ygeH 946265 ygeH Escherichia coli K12 predictedtranscriptional regulator NP_417329.1 2990116 D 83333 CDS NP_417330.1 16130757 947336 2991660..2991878 1 NC_000913.2 predicted protein 2991878 ygeI 947336 ygeI Escherichia coli K12 predicted protein NP_417330.1 2991660 D 83333 CDS b2854 947338 join(2991961..2992404,2992404..2992463) 1 NC_000913.2 predicted peptidoglycan-binding enzyme (pseudogene); 2992463 pbl 947338 pbl Escherichia coli K12 2991961 D 83333 CDS b2856 947332 complement(2992482..2993114) 1 NC_000913.2 predicted protein putative 2-component transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; 2993114 ygeK 947332 ygeK Escherichia coli K12 2992482 R 83333 CDS b2858 2847705 complement(join(2993336..2993782,2993782..2994042)) 1 NC_000913.2 predicted protein (pseudogene); 2994042 ygeN 2847705 ygeN Escherichia coli K12 2993336 R 83333 CDS b2859 947325 complement(2993984..2994382) 1 NC_000913.2 pseudogene; 2994382 ygeO 947325 ygeO Escherichia coli K12 2993984 R 83333 CDS NP_417337.1 16130763 947346 complement(2994394..2995299) 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB' 2995299 insD 947346 insD Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element transposase InsAB' NP_417337.1 2994394 R 83333 CDS NP_417338.3 145698306 947347 complement(2995257..2995622) 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element repressor InsA 2995622 insC 947347 insC Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element repressor InsA NP_417338.3 2995257 R 83333 CDS b2863 947344 complement(2995714..2996850) 1 NC_000913.2 predicted protein; 2996850 ygeQ 947344 ygeQ Escherichia coli K12 2995714 R 83333 CDS NP_417341.4 90111503 947352 complement(2997158..2997913) 1 NC_000913.2 putative lipoprotein; GO_component: cell outer membrane [goid 0009279]; tetratricopeptide repeat transcriptional regulator 2997913 ygeR 947352 ygeR Escherichia coli K12 tetratricopeptide repeat transcriptional regulator NP_417341.4 2997158 R 83333 CDS NP_417342.1 16130768 947116 2998367..3000625 1 NC_000913.2 xanthine dehydrogenase, molybdenum binding subunit 3000625 xdhA 947116 xdhA Escherichia coli K12 xanthine dehydrogenase, molybdenum binding subunit NP_417342.1 2998367 D 83333 CDS NP_417343.1 16130769 947205 3000636..3001514 1 NC_000913.2 xanthine dehydrogenase, FAD-binding subunit 3001514 xdhB 947205 xdhB Escherichia coli K12 xanthine dehydrogenase, FAD-binding subunit NP_417343.1 3000636 D 83333 CDS NP_417344.1 16130770 945148 3001511..3001990 1 NC_000913.2 xanthine dehydrogenase, Fe-S binding subunit 3001990 xdhC 945148 xdhC Escherichia coli K12 xanthine dehydrogenase, Fe-S binding subunit NP_417344.1 3001511 D 83333 CDS NP_417345.1 16130771 947320 complement(3002030..3003808) 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3003808 ygeV 947320 ygeV Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417345.1 3002030 R 83333 CDS YP_026185.1 49176276 945826 3004284..3005474 1 NC_000913.2 putative carbamoyl transferase; conserved protein 3005474 ygeW 945826 ygeW Escherichia coli K12 conserved protein YP_026185.1 3004284 D 83333 CDS NP_417347.1 16130773 947012 3005532..3006728 1 NC_000913.2 putative diaminopropionate ammonia-lyase; 2,3-diaminopropionate ammonia-lyase 3006728 ygeX 947012 ygeX Escherichia coli K12 2,3-diaminopropionate ammonia-lyase NP_417347.1 3005532 D 83333 CDS NP_417348.1 16130774 947360 3006786..3007997 1 NC_000913.2 putative deacetylase; predicted peptidase 3007997 ygeY 947360 ygeY Escherichia coli K12 predicted peptidase NP_417348.1 3006786 D 83333 CDS NP_417349.4 90111504 947359 3008050..3009435 1 NC_000913.2 D-stereospecific phenylhydantoinase 3009435 hyuA 947359 hyuA Escherichia coli K12 D-stereospecific phenylhydantoinase NP_417349.4 3008050 D 83333 CDS NP_417350.1 16130776 947358 3009483..3010415 1 NC_000913.2 putative kinase; predicted amino acid kinase 3010415 yqeA 947358 yqeA Escherichia coli K12 predicted amino acid kinase NP_417350.1 3009483 D 83333 CDS NP_417351.1 16130777 947357 complement(3010636..3012261) 1 NC_000913.2 putative synthases; conserved protein with NAD(P)-binding Rossman fold 3012261 yqeB 947357 yqeB Escherichia coli K12 conserved protein with NAD(P)-binding Rossman fold NP_417351.1 3010636 R 83333 CDS NP_417352.2 90111505 947350 complement(3012309..3013079) 1 NC_000913.2 conserved protein 3013079 yqeC 947350 yqeC Escherichia coli K12 conserved protein NP_417352.2 3012309 R 83333 CDS NP_417353.1 16130779 947356 3013182..3013760 1 NC_000913.2 conserved protein 3013760 ygfJ 947356 ygfJ Escherichia coli K12 conserved protein NP_417353.1 3013182 D 83333 CDS NP_417354.1 16130780 949068 3014082..3017180 1 NC_000913.2 putative oxidoreductase, Fe-S subunit; predicted oxidoreductase, Fe-S subunit 3017180 ygfK 949068 ygfK Escherichia coli K12 predicted oxidoreductase, Fe-S subunit NP_417354.1 3014082 D 83333 CDS NP_417355.4 90111506 949072 3017183..3018511 1 NC_000913.2 GO_process: cell cycle [goid 0007049]; predicted chlorohydrolase/aminohydrolase 3018511 ssnA 949072 ssnA Escherichia coli K12 predicted chlorohydrolase/aminohydrolase NP_417355.4 3017183 D 83333 CDS NP_417356.1 16130782 949071 3018562..3019341 1 NC_000913.2 predicted oxidoreductase 3019341 ygfM 949071 ygfM Escherichia coli K12 predicted oxidoreductase NP_417356.1 3018562 D 83333 CDS NP_417357.1 16130783 949079 3019338..3022208 1 NC_000913.2 fused predicted xanthine/hypoxanthine oxidase: molybdopterin-binding subunit/Fe-S binding subunit 3022208 xdhD 949079 xdhD Escherichia coli K12 fused predicted xanthine/hypoxanthine oxidase: molybdopterin-binding subunit/Fe-S binding subunit NP_417357.1 3019338 D 83333 CDS NP_417358.2 90111507 949075 3022373..3023773 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; predicted transporter 3023773 ygfO 949075 ygfO Escherichia coli K12 predicted transporter NP_417358.2 3022373 D 83333 CDS NP_417359.1 16130785 947366 3023788..3025107 1 NC_000913.2 guanine deaminase 3025107 guaD 947366 guaD Escherichia coli K12 guanine deaminase NP_417359.1 3023788 D 83333 CDS YP_026186.1 49176279 2847748 3025143..3026510 1 NC_000913.2 predicted transporter 3026510 ygfQ 2847748 ygfQ Escherichia coli K12 predicted transporter YP_026186.1 3025143 D 83333 CDS NP_417362.4 90111508 949016 complement(3026546..3027034) 1 NC_000913.2 putative oxidoreductase, Fe-S subunit; predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit 3027034 ygfS 949016 ygfS Escherichia coli K12 predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit NP_417362.4 3026546 R 83333 CDS NP_417363.2 90111509 949018 complement(3027034..3028953) 1 NC_000913.2 putative oxidoreductase, Fe-S subunit; fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit 3028953 ygfT 949018 ygfT Escherichia coli K12 fused predicted oxidoreductase: Fe-S subunit/nucleotide-binding subunit NP_417363.2 3027034 R 83333 CDS NP_417364.2 90111510 949017 3029389..3030837 1 NC_000913.2 putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3030837 ygfU 949017 ygfU Escherichia coli K12 predicted transporter NP_417364.2 3029389 D 83333 CDS NP_417365.1 16130791 949020 3031087..3031635 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; isopentenyl diphosphate isomerase 3031635 idi 949020 idi Escherichia coli K12 isopentenyl diphosphate isomerase NP_417365.1 3031087 D 83333 CDS NP_417366.1 16130792 947372 complement(3031679..3033196) 1 NC_000913.2 lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; lysine tRNA synthetase, constitutive 3033196 lysS 947372 lysS Escherichia coli K12 lysine tRNA synthetase, constitutive NP_417366.1 3031679 R 83333 CDS NP_417367.1 16130793 947369 complement(join(3033206..3034228,3034230..3034304)) 1 NC_000913.2 an in-frame premature UGA termination codon is located within the prfB sequence, and a naturally occuring +1 frameshift is required for synthesis of RF-2; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; peptide chain release factor RF-2 3034304 prfB 947369 prfB Escherichia coli K12 peptide chain release factor RF-2 NP_417367.1 3033206 R 83333 CDS NP_417368.1 16130794 947367 complement(3034395..3036128) 1 NC_000913.2 ssDNA exonuclease, 5' --> 3' specific; GO_process: DNA catabolic process [goid 0006308]; ssDNA exonuclease, 5' --> 3'-specific 3036128 recJ 947367 recJ Escherichia coli K12 ssDNA exonuclease, 5' --> 3'-specific NP_417368.1 3034395 R 83333 CDS NP_417369.1 16130795 947363 complement(3036134..3036844) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; protein disulfide isomerase II 3036844 dsbC 947363 dsbC Escherichia coli K12 protein disulfide isomerase II NP_417369.1 3036134 R 83333 CDS NP_417370.1 16130796 947362 complement(3036869..3037765) 1 NC_000913.2 GO_process: DNA recombination [goid 0006310]; site-specific tyrosine recombinase 3037765 xerD 947362 xerD Escherichia coli K12 site-specific tyrosine recombinase NP_417370.1 3036869 R 83333 CDS NP_417371.1 16130797 947361 3037877..3038398 1 NC_000913.2 GO_function: electron carrier activity [goid 0009055]; GO_process: aerobic respiration [goid 0009060]; flavodoxin 2 3038398 fldB 947361 fldB Escherichia coli K12 flavodoxin 2 NP_417371.1 3037877 D 83333 CDS NP_417372.1 16130798 947379 complement(3038438..3038845) 1 NC_000913.2 predicted protein 3038845 ygfX 947379 ygfX Escherichia coli K12 predicted protein NP_417372.1 3038438 R 83333 CDS NP_417373.1 16130799 947382 complement(3038826..3039092) 1 NC_000913.2 conserved protein 3039092 ygfY 947382 ygfY Escherichia coli K12 conserved protein NP_417373.1 3038826 R 83333 CDS NP_417374.1 16130800 947384 3039335..3040315 1 NC_000913.2 predicted folate-dependent regulatory protein 3040315 ygfZ 947384 ygfZ Escherichia coli K12 predicted folate-dependent regulatory protein NP_417374.1 3039335 D 83333 CDS NP_417375.1 16130801 947381 complement(3040511..3041170) 1 NC_000913.2 putative oxidoreductase; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted oxidoreductase, inner membrane subunit 3041170 yqfA 947381 yqfA Escherichia coli K12 predicted oxidoreductase, inner membrane subunit NP_417375.1 3040511 R 83333 CDS NP_417376.1 16130802 947380 complement(3041334..3041645) 1 NC_000913.2 conserved protein 3041645 yqfB 947380 yqfB Escherichia coli K12 conserved protein NP_417376.1 3041334 R 83333 CDS NP_417377.1 16130803 947378 3041684..3043123 1 NC_000913.2 6-phospho-beta-glucosidase A; cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; 6-phospho-beta-glucosidase A 3043123 bglA 947378 bglA Escherichia coli K12 6-phospho-beta-glucosidase A NP_417377.1 3041684 D 83333 CDS NP_417378.1 16130804 947373 complement(3043180..3043923) 1 NC_000913.2 putative oxidoreductase; predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain 3043923 ygfF 947373 ygfF Escherichia coli K12 predicted NAD(P)-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_417378.1 3043180 R 83333 CDS NP_417379.1 16130805 947394 complement(3044190..3047063) 1 NC_000913.2 glycine decarboxylase, P protein of glycine cleavage system; GO_process: amino acid catabolic process [goid 0009063]; glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex 3047063 gcvP 947394 gcvP Escherichia coli K12 glycine decarboxylase, PLP-dependent, subunit (protein P) of glycine cleavage complex NP_417379.1 3044190 R 83333 CDS NP_417380.1 16130806 947393 complement(3047182..3047571) 1 NC_000913.2 in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor; GO_process: amino acid catabolic process [goid 0009063]; glycine cleavage complex lipoylprotein 3047571 gcvH 947393 gcvH Escherichia coli K12 glycine cleavage complex lipoylprotein NP_417380.1 3047182 R 83333 CDS NP_417381.1 16130807 947390 complement(3047595..3048689) 1 NC_000913.2 aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system; GO_process: amino acid catabolic process [goid 0009063]; aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex 3048689 gcvT 947390 gcvT Escherichia coli K12 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex NP_417381.1 3047595 R 83333 CDS NP_417382.1 16130808 947389 complement(3049137..3050339) 1 NC_000913.2 predicted oxidoreductase with FAD/NAD(P)-binding domain 3050339 visC 947389 visC Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain NP_417382.1 3049137 R 83333 CDS NP_417383.1 16130809 947388 complement(3050362..3051540) 1 NC_000913.2 2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone; GO_process: aerobic respiration [goid 0009060]; 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding 3051540 ubiH 947388 ubiH Escherichia coli K12 2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding NP_417383.1 3050362 R 83333 CDS NP_417384.1 16130810 947385 complement(3051537..3052862) 1 NC_000913.2 proline aminopeptidase P II 3052862 pepP 947385 pepP Escherichia coli K12 proline aminopeptidase P II NP_417384.1 3051537 R 83333 CDS NP_417385.4 90111511 947400 complement(3052888..3053466) 1 NC_000913.2 predicted protein 3053466 ygfB 947400 ygfB Escherichia coli K12 predicted protein NP_417385.4 3052888 R 83333 CDS NP_417386.1 16130812 947404 3053634..3053963 1 NC_000913.2 protein that localizes to the cytokinetic ring 3053963 zapA 947404 zapA Escherichia coli K12 protein that localizes to the cytokinetic ring NP_417386.1 3053634 D 83333 CDS NP_417387.3 49176282 945167 3054263..3054811 1 NC_000913.2 putative ligase; predicted ligase 3054811 ygfA 945167 ygfA Escherichia coli K12 predicted ligase NP_417387.3 3054263 D 83333 CDS NP_417388.1 16130814 945258 complement(3055200..3056432) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: L-serine biosynthetic process [goid 0006564]; D-3-phosphoglycerate dehydrogenase 3056432 serA 945258 serA Escherichia coli K12 D-3-phosphoglycerate dehydrogenase NP_417388.1 3055200 R 83333 CDS NP_417389.1 16130815 947407 complement(3056688..3057347) 1 NC_000913.2 ribosephosphate isomerase, constitutive; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; ribose 5-phosphate isomerase, constitutive 3057347 rpiA 947407 rpiA Escherichia coli K12 ribose 5-phosphate isomerase, constitutive NP_417389.1 3056688 R 83333 CDS b2915 946707 complement(3057403..3057723) 1 NC_000913.2 pseudogene; 3057723 yqfE 946707 yqfE Escherichia coli K12 3057403 R 83333 CDS NP_417391.1 16130817 944867 3057775..3058668 1 NC_000913.2 replication initiation inhibitor, binds to 13-mers at oriC; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, replication initiation inhibitor 3058668 argP 944867 argP Escherichia coli K12 DNA-binding transcriptional activator, replication initiation inhibitor NP_417391.1 3057775 D 83333 CDS NP_417392.1 16130818 945576 3058872..3061016 1 NC_000913.2 methylmalonyl-CoA mutase (MCM); GO_process: fatty acid oxidation [goid 0019395]; methylmalonyl-CoA mutase 3061016 scpA 945576 scpA Escherichia coli K12 methylmalonyl-CoA mutase NP_417392.1 3058872 D 83333 CDS NP_417393.1 16130819 947412 3061009..3062004 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane ATPase/protein kinase 3062004 argK 947412 argK Escherichia coli K12 membrane ATPase/protein kinase NP_417393.1 3061009 D 83333 CDS NP_417394.4 90111512 947408 3062015..3062800 1 NC_000913.2 putative enzyme; methylmalonyl-CoA decarboxylase, biotin-independent 3062800 scpB 947408 scpB Escherichia coli K12 methylmalonyl-CoA decarboxylase, biotin-independent NP_417394.4 3062015 D 83333 CDS NP_417395.1 16130821 947402 3062824..3064302 1 NC_000913.2 putative coenzyme A transferase; propionyl-CoA:succinate-CoA transferase 3064302 scpC 947402 scpC Escherichia coli K12 propionyl-CoA:succinate-CoA transferase NP_417395.1 3062824 D 83333 CDS NP_417396.4 90111513 947401 complement(3064299..3065195) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3065195 ygfI 947401 ygfI Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417396.4 3064299 R 83333 CDS NP_417397.1 16130823 947398 complement(3065362..3066102) 1 NC_000913.2 putative actin; conserved protein 3066102 yggE 947398 yggE Escherichia coli K12 conserved protein NP_417397.1 3065362 R 83333 CDS NP_417398.1 16130824 947418 complement(3066195..3066830) 1 NC_000913.2 arginine transporter 3066830 argO 947418 argO Escherichia coli K12 arginine transporter NP_417398.1 3066195 R 83333 CDS NP_417399.1 16130825 947416 complement(3066969..3067829) 1 NC_000913.2 mechanosensitive channel 3067829 mscS 947416 mscS Escherichia coli K12 mechanosensitive channel NP_417399.1 3066969 R 83333 CDS NP_417400.1 16130826 947415 complement(3068187..3069266) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; fructose-bisphosphate aldolase, class II 3069266 fbaA 947415 fbaA Escherichia coli K12 fructose-bisphosphate aldolase, class II NP_417400.1 3068187 R 83333 CDS NP_417401.1 16130827 947414 complement(3069481..3070644) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; phosphoglycerate kinase 3070644 pgk 947414 pgk Escherichia coli K12 phosphoglycerate kinase NP_417401.1 3069481 R 83333 CDS NP_417402.1 16130828 947413 complement(3070694..3071713) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: gluconeogenesis [goid 0006094]; D-erythrose 4-phosphate dehydrogenase 3071713 epd 947413 epd Escherichia coli K12 D-erythrose 4-phosphate dehydrogenase NP_417402.1 3070694 R 83333 CDS NP_417403.1 16130829 947419 complement(3071998..3072711) 1 NC_000913.2 putative kinase; conserved protein with nucleoside triphosphate hydrolase domain 3072711 yggC 947419 yggC Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_417403.1 3071998 R 83333 CDS NP_417404.1 16130830 946861 complement(3072708..3073217) 1 NC_000913.2 putative transcriptional regulator; predicted DNA-binding transcriptional regulator 3073217 yggD 946861 yggD Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417404.1 3072708 R 83333 CDS NP_417405.1 16130831 947410 complement(3073239..3074204) 1 NC_000913.2 predicted hexoseP phosphatase 3074204 yggF 947410 yggF Escherichia coli K12 predicted hexoseP phosphatase NP_417405.1 3073239 R 83333 CDS YP_026187.1 49176285 2847686 complement(3074201..3075478) 1 NC_000913.2 predicted dehydrogenase 3075478 yggP 2847686 yggP Escherichia coli K12 predicted dehydrogenase YP_026187.1 3074201 R 83333 CDS NP_417408.1 16130834 945256 complement(3075493..3076881) 1 NC_000913.2 PTS system, mannitol-specific enzyme II component, cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; predicted fused mannitol-specific PTS enzymes: IIB component/IIC component 3076881 cmtA 945256 cmtA Escherichia coli K12 predicted fused mannitol-specific PTS enzymes: IIB component/IIC component NP_417408.1 3075493 R 83333 CDS NP_417409.1 16130835 945125 complement(3076909..3077352) 1 NC_000913.2 PTS system, mannitol-specific enzyme II component, cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; predicted mannitol-specific enzyme IIA component of PTS 3077352 cmtB 945125 cmtB Escherichia coli K12 predicted mannitol-specific enzyme IIA component of PTS NP_417409.1 3076909 R 83333 CDS YP_026188.1 49176286 947420 complement(3077666..3079657) 1 NC_000913.2 transketolase 1 isozyme; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; transketolase 1, thiamin-binding 3079657 tktA 947420 tktA Escherichia coli K12 transketolase 1, thiamin-binding YP_026188.1 3077666 R 83333 CDS NP_417411.2 90111514 945173 3079935..3080693 1 NC_000913.2 predicted peptidase 3080693 yggG 945173 yggG Escherichia coli K12 predicted peptidase NP_417411.2 3079935 D 83333 CDS NP_417412.1 16130838 947715 complement(3080899..3081819) 1 NC_000913.2 GO_process: polyamine biosynthetic process [goid 0006596]; agmatinase 3081819 speB 947715 speB Escherichia coli K12 agmatinase NP_417412.1 3080899 R 83333 CDS NP_417413.1 16130839 947432 complement(3081957..3083933) 1 NC_000913.2 biosynthetic arginine decarboxylase; GO_component: periplasmic space [goid 0042597]; GO_process: polyamine biosynthetic process [goid 0006596]; biosynthetic arginine decarboxylase, PLP-binding 3083933 speA 947432 speA Escherichia coli K12 biosynthetic arginine decarboxylase, PLP-binding NP_417413.1 3081957 R 83333 CDS NP_417414.2 145698307 947433 complement(3083942..3084073) 1 NC_000913.2 predicted protein 3084073 yqgB 947433 yqgB Escherichia coli K12 predicted protein NP_417414.2 3083942 R 83333 CDS NP_417415.1 16130841 945052 3084209..3084424 1 NC_000913.2 predicted protein 3084424 yqgC 945052 yqgC Escherichia coli K12 predicted protein NP_417415.1 3084209 D 83333 CDS NP_417416.1 16130842 945430 complement(3084421..3084672) 1 NC_000913.2 predicted inner membrane protein 3084672 yqgD 945430 yqgD Escherichia coli K12 predicted inner membrane protein NP_417416.1 3084421 R 83333 CDS NP_417417.1 16130843 945389 3084728..3085882 1 NC_000913.2 methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes; GO_component: cytoplasm [goid 0005737]; GO_process: S-adenosylmethionine biosynthetic process [goid 0006556]; methionine adenosyltransferase 1 3085882 metK 945389 metK Escherichia coli K12 methionine adenosyltransferase 1 NP_417417.1 3084728 D 83333 CDS NP_417418.1 16130844 947434 3086306..3087700 1 NC_000913.2 galactose-proton symport of transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-galactose transporter 3087700 galP 947434 galP Escherichia coli K12 D-galactose transporter NP_417418.1 3086306 D 83333 CDS NP_417419.1 16130845 947443 3087777..3088274 1 NC_000913.2 conserved protein 3088274 yggI 947443 yggI Escherichia coli K12 conserved protein NP_417419.1 3087777 D 83333 CDS NP_417420.1 16130846 949092 3088369..3089076 1 NC_000913.2 GO_process: DNA catabolic process [goid 0006308]; DNA-specific endonuclease I 3089076 endA 949092 endA Escherichia coli K12 DNA-specific endonuclease I NP_417420.1 3088369 D 83333 CDS NP_417421.4 90111515 945816 3089156..3089887 1 NC_000913.2 predicted protein 3089887 rsmE 945816 rsmE Escherichia coli K12 predicted protein NP_417421.4 3089156 D 83333 CDS NP_417422.1 16130848 947445 3089900..3090850 1 NC_000913.2 GO_process: glutathione biosynthetic process [goid 0006750]; glutathione synthetase 3090850 gshB 947445 gshB Escherichia coli K12 glutathione synthetase NP_417422.1 3089900 D 83333 CDS NP_417423.4 90111516 947442 3090959..3091522 1 NC_000913.2 predicted protein 3091522 yqgE 947442 yqgE Escherichia coli K12 predicted protein NP_417423.4 3090959 D 83333 CDS NP_417424.1 16130850 947439 3091522..3091938 1 NC_000913.2 predicted Holliday junction resolvase 3091938 yqgF 947439 yqgF Escherichia coli K12 predicted Holliday junction resolvase NP_417424.1 3091522 D 83333 CDS NP_417425.2 90111517 947430 complement(3092122..3093102) 1 NC_000913.2 putative protein transport; predicted transporter 3093102 yggR 947430 yggR Escherichia coli K12 predicted transporter NP_417425.2 3092122 R 83333 CDS NP_417426.1 16130852 947423 3093120..3093824 1 NC_000913.2 predicted enzyme 3093824 yggS 947423 yggS Escherichia coli K12 predicted enzyme NP_417426.1 3093120 D 83333 CDS NP_417427.1 16130853 947421 3093842..3094408 1 NC_000913.2 conserved hypothetical integral membrane protein; predicted inner membrane protein 3094408 yggT 947421 yggT Escherichia coli K12 predicted inner membrane protein NP_417427.1 3093842 D 83333 CDS NP_417428.2 90111518 947424 3094405..3094695 1 NC_000913.2 conserved protein 3094695 yggU 947424 yggU Escherichia coli K12 conserved protein NP_417428.2 3094405 D 83333 CDS NP_417429.1 16130855 947429 3094703..3095296 1 NC_000913.2 putative ribosomal protein; dITP/XTP pyrophosphatase 3095296 rdgB 947429 rdgB Escherichia coli K12 dITP/XTP pyrophosphatase NP_417429.1 3094703 D 83333 CDS NP_417430.1 16130856 947446 3095289..3096425 1 NC_000913.2 putative oxidase; predicted oxidoreductase 3096425 yggW 947446 yggW Escherichia coli K12 predicted oxidoreductase NP_417430.1 3095289 D 83333 CDS NP_417431.1 16130857 947455 complement(3096580..3097587) 1 NC_000913.2 putative alpha helix chain; conserved protein 3097587 yggM 947455 yggM Escherichia coli K12 conserved protein NP_417431.1 3096580 R 83333 CDS NP_417432.1 16130858 947454 complement(3097704..3098750) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; periplasmic L-asparaginase II 3098750 ansB 947454 ansB Escherichia coli K12 periplasmic L-asparaginase II NP_417432.1 3097704 R 83333 CDS NP_417433.1 16130859 947453 complement(3098926..3099645) 1 NC_000913.2 predicted protein 3099645 yggN 947453 yggN Escherichia coli K12 predicted protein NP_417433.1 3098926 R 83333 CDS NP_417434.4 90111519 947449 complement(3099829..3100155) 1 NC_000913.2 predicted protein 3100155 yggL 947449 yggL Escherichia coli K12 predicted protein NP_417434.4 3099829 R 83333 CDS NP_417435.1 16130861 947448 complement(3100155..3100874) 1 NC_000913.2 tRNA (m7G46) methyltransferase, SAM-dependent 3100874 trmI 947448 trmI Escherichia coli K12 tRNA (m7G46) methyltransferase, SAM-dependent NP_417435.1 3100155 R 83333 CDS NP_417436.1 16130862 947447 3101035..3102087 1 NC_000913.2 adenine glycosylase; G.C --> T.A transversions; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; adenine DNA glycosylase 3102087 mutY 947447 mutY Escherichia coli K12 adenine DNA glycosylase NP_417436.1 3101035 D 83333 CDS NP_417437.1 16130863 947461 3102115..3102390 1 NC_000913.2 protein that protects iron-sulfur proteins against oxidative damage 3102390 yggX 947461 yggX Escherichia coli K12 protein that protects iron-sulfur proteins against oxidative damage NP_417437.1 3102115 D 83333 CDS NP_417438.2 90111520 945428 3102455..3103534 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; membrane-bound lytic murein transglycosylase C 3103534 mltC 945428 mltC Escherichia coli K12 membrane-bound lytic murein transglycosylase C NP_417438.2 3102455 D 83333 CDS NP_417439.4 90111521 946282 3103736..3104992 1 NC_000913.2 transport of nucleosides, permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; nucleoside transporter 3104992 nupG 946282 nupG Escherichia coli K12 nucleoside transporter NP_417439.4 3103736 D 83333 CDS NP_417440.4 90111522 947457 complement(3105042..3107177) 1 NC_000913.2 ornithine decarboxylase isozyme; GO_process: polyamine biosynthetic process [goid 0006596]; ornithine decarboxylase, constitutive 3107177 speC 947457 speC Escherichia coli K12 ornithine decarboxylase, constitutive NP_417440.4 3105042 R 83333 CDS NP_417441.1 16130867 947462 3107575..3108282 1 NC_000913.2 putative transport protein; predicted inner membrane protein 3108282 yqgA 947462 yqgA Escherichia coli K12 predicted inner membrane protein NP_417441.1 3107575 D 83333 CDS NP_417442.1 16130868 947025 complement(3108612..3109148) 1 NC_000913.2 putative secretion pathway protein; predicted secretion pathway M-type protein, membrane anchored 3109148 yghD 947025 yghD Escherichia coli K12 predicted secretion pathway M-type protein, membrane anchored NP_417442.1 3108612 R 83333 CDS b2969 945897 complement(3109150..3110112) 1 NC_000913.2 pseudogene, predicted secretion pathway protein, L-type protein putative general secretion pathway for protein export (GSP); 3110112 yghE 945897 yghE Escherichia coli K12 3109150 R 83333 CDS b2970 947469 complement(3110115..3110942) 1 NC_000913.2 predicted secretion pathway protein, C-type protein;putative transport; Not classified putative general secretion pathway for protein export (GSP); 3110942 yghF 947469 yghF Escherichia coli K12 3110115 R 83333 CDS NP_417445.1 16130871 947470 complement(3111089..3111499) 1 NC_000913.2 predicted protein 3111499 yghG 947470 yghG Escherichia coli K12 predicted protein NP_417445.1 3111089 R 83333 CDS NP_417446.4 90111523 947467 complement(3111565..3112374) 1 NC_000913.2 bifunctional prepilin leader peptidase/ methylase 3112374 pppA 947467 pppA Escherichia coli K12 bifunctional prepilin leader peptidase/ methylase NP_417446.4 3111565 R 83333 CDS YP_026189.1 49176293 2847716 complement(3112572..3117134) 1 NC_000913.2 putative lipoprotein; predicted inner membrane lipoprotein 3117134 yghJ 2847716 yghJ Escherichia coli K12 predicted inner membrane lipoprotein YP_026189.1 3112572 R 83333 CDS NP_417449.1 16130875 947259 complement(3117619..3119301) 1 NC_000913.2 putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; glycolate transporter 3119301 glcA 947259 glcA Escherichia coli K12 glycolate transporter NP_417449.1 3117619 R 83333 CDS NP_417450.1 16130876 948857 complement(3119656..3121827) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glyoxylate catabolic process [goid 0009436]; malate synthase G 3121827 glcB 948857 glcB Escherichia coli K12 malate synthase G NP_417450.1 3119656 R 83333 CDS NP_417451.1 16130877 947473 complement(3121849..3122253) 1 NC_000913.2 conserved protein 3122253 glcG 947473 glcG Escherichia coli K12 conserved protein NP_417451.1 3121849 R 83333 CDS YP_026190.1 49176294 2847717 complement(3122258..3123481) 1 NC_000913.2 glycolate oxidase iron-sulfur subunit 3123481 glcF 2847717 glcF Escherichia coli K12 glycolate oxidase iron-sulfur subunit YP_026190.1 3122258 R 83333 CDS YP_026191.1 49176295 2847718 complement(3123492..3124544) 1 NC_000913.2 glycolate oxidase iron-sulfur subunit; glycolate oxidase FAD binding subunit 3124544 glcE 2847718 glcE Escherichia coli K12 glycolate oxidase FAD binding subunit YP_026191.1 3123492 R 83333 CDS NP_417453.1 16130879 947353 complement(3124544..3126043) 1 NC_000913.2 glycolate oxidase subunit D; GO_process: carbohydrate catabolic process [goid 0016052]; glycolate oxidase subunit, FAD-linked 3126043 glcD 947353 glcD Escherichia coli K12 glycolate oxidase subunit, FAD-linked NP_417453.1 3124544 R 83333 CDS NP_417454.1 16130880 947466 3126294..3127058 1 NC_000913.2 transcriptional activator for glc operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, glycolate-binding 3127058 glcC 947466 glcC Escherichia coli K12 DNA-binding transcriptional dual regulator, glycolate-binding NP_417454.1 3126294 D 83333 CDS b2981 947701 complement(3127065..3128165) 1 NC_000913.2 pseudogene, predicted DNA-binding transcriptional regulator; 3128165 yghO 947701 yghO Escherichia coli K12 3127065 R 83333 CDS NP_417456.1 16130882 947516 3128200..3129216 1 NC_000913.2 IS5 transposase and trans-activator 3129216 insH 947516 insH Escherichia coli K12 IS5 transposase and trans-activator NP_417456.1 3128200 D 83333 CDS YP_026192.1 49176296 947716 complement(3129363..3130430) 1 NC_000913.2 predicted inner membrane protein 3130430 yghQ 947716 yghQ Escherichia coli K12 predicted inner membrane protein YP_026192.1 3129363 R 83333 CDS NP_417458.1 16130884 947310 complement(3130476..3131234) 1 NC_000913.2 predicted protein with nucleoside triphosphate hydrolase domain 3131234 yghR 947310 yghR Escherichia coli K12 predicted protein with nucleoside triphosphate hydrolase domain NP_417458.1 3130476 R 83333 CDS NP_417459.1 16130885 947476 complement(3131266..3131979) 1 NC_000913.2 predicted protein with nucleoside triphosphate hydrolase domain 3131979 yghS 947476 yghS Escherichia coli K12 predicted protein with nucleoside triphosphate hydrolase domain NP_417459.1 3131266 R 83333 CDS NP_417460.1 16130886 947477 3132153..3132845 1 NC_000913.2 predicted protein with nucleoside triphosphate hydrolase domain 3132845 yghT 947477 yghT Escherichia coli K12 predicted protein with nucleoside triphosphate hydrolase domain NP_417460.1 3132153 D 83333 CDS NP_417461.1 16130887 947475 complement(3132894..3134393) 1 NC_000913.2 low-affinity phosphate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter 3134393 pitB 947475 pitB Escherichia coli K12 phosphate transporter NP_417461.1 3132894 R 83333 CDS NP_417462.1 16130888 947474 complement(3134685..3136544) 1 NC_000913.2 glutathionylspermidine synthetase/amidase; GO_process: polyamine biosynthetic process [goid 0006596]; fused glutathionylspermidine amidase/glutathionylspermidine synthetase 3136544 gsp 947474 gsp Escherichia coli K12 fused glutathionylspermidine amidase/glutathionylspermidine synthetase NP_417462.1 3134685 R 83333 CDS NP_417463.4 90111524 947472 3136749..3137615 1 NC_000913.2 predicted S-transferase 3137615 yghU 947472 yghU Escherichia coli K12 predicted S-transferase NP_417463.4 3136749 D 83333 CDS NP_417464.1 16130890 948020 complement(3137738..3137986) 1 NC_000913.2 hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; hydrogenase 2 accessory protein 3137986 hybG 948020 hybG Escherichia coli K12 hydrogenase 2 accessory protein NP_417464.1 3137738 R 83333 CDS NP_417465.1 16130891 948004 complement(3137999..3138340) 1 NC_000913.2 may modulate levels of hydrogenease-2; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; protein involved with the maturation of hydrogenases 1 and 2 3138340 hybF 948004 hybF Escherichia coli K12 protein involved with the maturation of hydrogenases 1 and 2 NP_417465.1 3137999 R 83333 CDS NP_417466.1 16130892 947483 complement(3138333..3138821) 1 NC_000913.2 member of hyb operon; hydrogenase 2-specific chaperone 3138821 hybE 947483 hybE Escherichia coli K12 hydrogenase 2-specific chaperone NP_417466.1 3138333 R 83333 CDS NP_417467.1 16130893 948982 complement(3138814..3139308) 1 NC_000913.2 probable processing element for hydrogenase-2; GO_process: anaerobic respiration [goid 0009061]; predicted maturation element for hydrogenase 2 3139308 hybD 948982 hybD Escherichia coli K12 predicted maturation element for hydrogenase 2 NP_417467.1 3138814 R 83333 CDS NP_417468.1 16130894 945182 complement(3139308..3141011) 1 NC_000913.2 probable large subunit, hydrogenase-2; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; hydrogenase 2, large subunit 3141011 hybC 945182 hybC Escherichia coli K12 hydrogenase 2, large subunit NP_417468.1 3139308 R 83333 CDS NP_417469.1 16130895 948615 complement(3141008..3142186) 1 NC_000913.2 probable cytochrome Ni/Fe component of hydrogenase-2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; predicted hydrogenase 2 cytochrome b type component 3142186 hybB 948615 hybB Escherichia coli K12 predicted hydrogenase 2 cytochrome b type component NP_417469.1 3141008 R 83333 CDS NP_417470.1 16130896 944842 complement(3142176..3143162) 1 NC_000913.2 hydrogenase-2 small subunit; hydrogenase 2 4Fe-4S ferredoxin-type component 3143162 hybA 944842 hybA Escherichia coli K12 hydrogenase 2 4Fe-4S ferredoxin-type component NP_417470.1 3142176 R 83333 CDS NP_417471.1 16130897 945902 complement(3143165..3144283) 1 NC_000913.2 GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; hydrogenase 2, small subunit 3144283 hybO 945902 hybO Escherichia coli K12 hydrogenase 2, small subunit NP_417471.1 3143165 R 83333 CDS NP_417472.1 16130898 947485 complement(3144472..3144759) 1 NC_000913.2 predicted protein 3144759 yghW 947485 yghW Escherichia coli K12 predicted protein NP_417472.1 3144472 R 83333 CDS b4658 2847694 complement(join(3144878..3145294,3145294..3145713)) 1 NC_000913.2 predicted dienlactone hydrolase (pseudogene); 3145713 yghX 2847694 yghX Escherichia coli K12 3144878 R 83333 CDS NP_417474.1 16130899 947480 3145919..3146959 1 NC_000913.2 putative reductase; GO_function: voltage-gated ion channel activity [goid 0005244]; aldo-keto reductase 3146959 yghZ 947480 yghZ Escherichia coli K12 aldo-keto reductase NP_417474.1 3145919 D 83333 CDS NP_417475.1 16130900 947479 complement(3146999..3147493) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3147493 yqhA 947479 yqhA Escherichia coli K12 conserved inner membrane protein NP_417475.1 3146999 R 83333 CDS NP_417476.1 16130901 947478 3147684..3148568 1 NC_000913.2 putative oxidoreductase; predicted glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain 3148568 yghA 947478 yghA Escherichia coli K12 predicted glutathionylspermidine synthase, with NAD(P)-binding Rossmann-fold domain NP_417476.1 3147684 D 83333 CDS NP_417478.1 16130903 946345 complement(3148840..3149265) 1 NC_000913.2 uptake of enterochelin; tonB-dependent uptake of B colicins; GO_process: iron ion transport [goid 0006826]; membrane spanning protein in TonB-ExbB-ExbD complex 3149265 exbD 946345 exbD Escherichia coli K12 membrane spanning protein in TonB-ExbB-ExbD complex NP_417478.1 3148840 R 83333 CDS NP_417479.1 16130904 945420 complement(3149272..3150006) 1 NC_000913.2 uptake of enterochelin; tonB-dependent uptake of B colicins; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; membrane spanning protein in TonB-ExbB-ExbD complex 3150006 exbB 945420 exbB Escherichia coli K12 membrane spanning protein in TonB-ExbB-ExbD complex NP_417479.1 3149272 R 83333 CDS NP_417481.1 16130906 946240 3150258..3151445 1 NC_000913.2 cystathionine beta-lyase (beta-cystathionase); GO_component: cytoplasm [goid 0005737]; GO_process: methionine biosynthetic process [goid 0009086]; cystathionine beta-lyase, PLP-dependent 3151445 metC 946240 metC Escherichia coli K12 cystathionine beta-lyase, PLP-dependent NP_417481.1 3150258 D 83333 CDS NP_417482.1 16130907 947490 3151585..3152244 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3152244 yghB 947490 yghB Escherichia coli K12 conserved inner membrane protein NP_417482.1 3151585 D 83333 CDS NP_417483.2 90111526 947491 complement(3152284..3153240) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3153240 yqhC 947491 yqhC Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417483.2 3152284 R 83333 CDS NP_417484.1 16130909 947493 3153377..3154540 1 NC_000913.2 putative oxidoreductase; alcohol dehydrogenase, NAD(P)-dependent 3154540 yqhD 947493 yqhD Escherichia coli K12 alcohol dehydrogenase, NAD(P)-dependent NP_417484.1 3153377 D 83333 CDS NP_417485.4 90111527 947495 3154645..3155472 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 2,5-diketo-D-gluconate reductase A 3155472 dkgA 947495 dkgA Escherichia coli K12 2,5-diketo-D-gluconate reductase A NP_417485.4 3154645 D 83333 CDS YP_026195.1 49176301 945919 3155672..3156598 1 NC_000913.2 conserved protein 3156598 yqhG 945919 yqhG Escherichia coli K12 conserved protein YP_026195.1 3155672 D 83333 CDS NP_417487.1 16130912 946832 3156649..3156906 1 NC_000913.2 GO_component: cell outer membrane [goid 0009279]; predicted outer membrane lipoprotein 3156906 yqhH 946832 yqhH Escherichia coli K12 predicted outer membrane lipoprotein NP_417487.1 3156649 D 83333 CDS YP_026196.1 49176302 948963 complement(3156949..3159168) 1 NC_000913.2 conserved protein 3159168 ygiQ 948963 ygiQ Escherichia coli K12 conserved protein YP_026196.1 3156949 R 83333 CDS NP_417489.1 16130913 944982 complement(3159279..3160691) 1 NC_000913.2 suppressor of ftsI; repressor protein for FtsI 3160691 sufI 944982 sufI Escherichia coli K12 repressor protein for FtsI NP_417489.1 3159279 R 83333 CDS NP_417490.1 16130914 947496 complement(3160766..3161503) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; 1-acyl-sn-glycerol-3-phosphate acyltransferase 3161503 plsC 947496 plsC Escherichia coli K12 1-acyl-sn-glycerol-3-phosphate acyltransferase NP_417490.1 3160766 R 83333 CDS NP_417491.1 16130915 947499 complement(3161737..3163995) 1 NC_000913.2 DNA topoisomerase IV subunit A; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA topoisomerase IV, subunit A 3163995 parC 947499 parC Escherichia coli K12 DNA topoisomerase IV, subunit A NP_417491.1 3161737 R 83333 CDS NP_417492.1 16130916 947140 complement(3164133..3165740) 1 NC_000913.2 putative transport periplasmic protein; GO_component: periplasmic space [goid 0042597]; predicted transporter subunit: periplasmic-binding component of ABC superfamily 3165740 ygiS 947140 ygiS Escherichia coli K12 predicted transporter subunit: periplasmic-binding component of ABC superfamily NP_417492.1 3164133 R 83333 CDS NP_417493.1 16130917 945814 complement(3165873..3166268) 1 NC_000913.2 predicted DNA-binding transcriptional regulator 3166268 ygiT 945814 ygiT Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417493.1 3165873 R 83333 CDS NP_417494.1 16130918 947500 complement(3166270..3166566) 1 NC_000913.2 predicted cyanide hydratase 3166566 mqsR 947500 mqsR Escherichia coli K12 predicted cyanide hydratase NP_417494.1 3166270 R 83333 CDS YP_026197.1 49176303 945805 complement(3166771..3167253) 1 NC_000913.2 predicted transcriptional regulator 3167253 ygiV 945805 ygiV Escherichia coli K12 predicted transcriptional regulator YP_026197.1 3166771 R 83333 CDS NP_417496.1 16130920 946051 complement(3167306..3167698) 1 NC_000913.2 conserved protein 3167698 ygiW 946051 ygiW Escherichia coli K12 conserved protein NP_417496.1 3167306 R 83333 CDS NP_417497.1 16130921 945369 3167850..3168509 1 NC_000913.2 putative 2-component transcriptional regulator; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; DNA-binding response regulator in two-component regulatory system with QseC 3168509 qseB 945369 qseB Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with QseC NP_417497.1 3167850 D 83333 CDS NP_417498.1 16130922 947174 3168506..3169855 1 NC_000913.2 putative 2-component sensor protein; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with QseB 3169855 qseC 947174 qseC Escherichia coli K12 sensory histidine kinase in two-component regulatory system with QseB NP_417498.1 3168506 D 83333 CDS NP_417499.1 16130923 946450 complement(3169901..3170233) 1 NC_000913.2 conserved inner membrane protein 3170233 ygiZ 946450 ygiZ Escherichia coli K12 conserved inner membrane protein NP_417499.1 3169901 R 83333 CDS NP_417500.1 16130924 947512 3170552..3171133 1 NC_000913.2 modulator of drug activity B; GO_function: electron donor activity [goid 0009053]; GO_process: response to drug [goid 0042493]; NADPH quinone reductase 3171133 mdaB 947512 mdaB Escherichia coli K12 NADPH quinone reductase NP_417500.1 3170552 D 83333 CDS NP_417501.1 16130925 947506 3171164..3171478 1 NC_000913.2 quinol monooxygenase 3171478 ygiN 947506 ygiN Escherichia coli K12 quinol monooxygenase NP_417501.1 3171164 D 83333 CDS NP_417502.1 16130926 947501 complement(3171526..3173418) 1 NC_000913.2 DNA topoisomerase IV subunit B; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA topoisomerase IV, subunit B 3173418 parE 947501 parE Escherichia coli K12 DNA topoisomerase IV, subunit B NP_417502.1 3171526 R 83333 CDS NP_417503.1 16130927 947488 complement(3173447..3174028) 1 NC_000913.2 predicted esterase 3174028 yqiA 947488 yqiA Escherichia coli K12 predicted esterase NP_417503.1 3173447 R 83333 CDS NP_417504.1 16130928 947515 complement(3174028..3174855) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: carbohydrate catabolic process [goid 0016052]; cyclic 3',5'-adenosine monophosphate phosphodiesterase 3174855 cpdA 947515 cpdA Escherichia coli K12 cyclic 3',5'-adenosine monophosphate phosphodiesterase NP_417504.1 3174028 R 83333 CDS NP_417505.1 16130929 947518 complement(3174880..3175302) 1 NC_000913.2 putative enzyme; predicted dehydrogenase 3175302 yqiB 947518 yqiB Escherichia coli K12 predicted dehydrogenase NP_417505.1 3174880 R 83333 CDS NP_417506.1 16130930 947519 complement(3175303..3175932) 1 NC_000913.2 ADP-ribose pyrophosphatase 3175932 nudF 947519 nudF Escherichia coli K12 ADP-ribose pyrophosphatase NP_417506.1 3175303 R 83333 CDS NP_417507.2 90111528 947521 3176137..3177618 1 NC_000913.2 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; transport channel 3177618 tolC 947521 tolC Escherichia coli K12 transport channel NP_417507.2 3176137 D 83333 CDS NP_417509.3 145698308 945086 3177766..3178437 1 NC_000913.2 conserved outer membrane protein 3178437 ygiB 945086 ygiB Escherichia coli K12 conserved outer membrane protein NP_417509.3 3177766 D 83333 CDS NP_417510.1 16130934 947249 3178443..3179603 1 NC_000913.2 putative synthetase/amidase; predicted enzyme 3179603 ygiC 947249 ygiC Escherichia coli K12 predicted enzyme NP_417510.1 3178443 D 83333 CDS NP_417511.1 16130935 946447 complement(3179641..3180456) 1 NC_000913.2 predicted dioxygenase 3180456 ygiD 946447 ygiD Escherichia coli K12 predicted dioxygenase NP_417511.1 3179641 R 83333 CDS NP_417512.1 16130936 947035 3180572..3181345 1 NC_000913.2 zinc transporter 3181345 zupT 947035 zupT Escherichia coli K12 zinc transporter NP_417512.1 3180572 D 83333 CDS NP_417513.1 16130937 947526 complement(3181835..3182488) 1 NC_000913.2 3,4 dihydroxy-2-butanone-4-phosphate synthase; 3,4-dihydroxy-2-butanone-4-phosphate synthase 3182488 ribB 947526 ribB Escherichia coli K12 3,4-dihydroxy-2-butanone-4-phosphate synthase NP_417513.1 3181835 R 83333 CDS NP_417514.4 90111530 947524 3182862..3183152 1 NC_000913.2 conserved protein 3183152 yqiC 947524 yqiC Escherichia coli K12 conserved protein NP_417514.4 3182862 D 83333 CDS NP_417515.1 16130939 947522 3183436..3183987 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 3183987 ygiL 947522 ygiL Escherichia coli K12 predicted fimbrial-like adhesin protein NP_417515.1 3183436 D 83333 CDS b3046 947529 join(3184083..3184111,3185443..3187887) 1 NC_000913.2 predicted outer membrane usher protein;putative membrane; Not classified putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; 3187887 yqiG 947529 yqiG Escherichia coli K12 3184083 D 83333 CDS NP_417516.3 145698309 947520 3184209..3184574 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element repressor InsA 3184574 insC 947520 insC Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element repressor InsA NP_417516.3 3184209 D 83333 CDS NP_417517.1 16130941 947517 3184532..3185437 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB' 3185437 insD 947517 insD Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element transposase InsAB' NP_417517.1 3184532 D 83333 CDS NP_417519.4 90111532 947531 3187903..3188652 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 3188652 yqiH 947531 yqiH Escherichia coli K12 predicted periplasmic pilin chaperone NP_417519.4 3187903 D 83333 CDS NP_417520.1 16130944 947535 3188654..3189718 1 NC_000913.2 conserved protein 3189718 yqiI 947535 yqiI Escherichia coli K12 conserved protein NP_417520.1 3188654 D 83333 CDS NP_417521.1 16130945 947533 complement(3189761..3189961) 1 NC_000913.2 glycogen biosynthesis, rpoS dependent; GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; predicted glycogen synthesis protein 3189961 glgS 947533 glgS Escherichia coli K12 predicted glycogen synthesis protein NP_417521.1 3189761 R 83333 CDS NP_417522.1 16130946 947530 3190230..3190859 1 NC_000913.2 putative oxidoreductase; predicted inner membrane protein 3190859 yqiJ 947530 yqiJ Escherichia coli K12 predicted inner membrane protein NP_417522.1 3190230 D 83333 CDS NP_417523.1 16130947 947537 3190886..3192547 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; conserved protein 3192547 yqiK 947537 yqiK Escherichia coli K12 conserved protein NP_417523.1 3190886 D 83333 CDS NP_417524.1 16130948 947548 complement(3193342..3194775) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 3194775 rfaE 947548 rfaE Escherichia coli K12 fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase NP_417524.1 3193342 R 83333 CDS NP_417525.1 16130949 947552 complement(3194823..3197663) 1 NC_000913.2 adenylylating enzyme for glutamine synthetase; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: protein modification [goid 0006464]; fused deadenylyltransferase/adenylyltransferase for glutamine synthetase 3197663 glnE 947552 glnE Escherichia coli K12 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase NP_417525.1 3194823 R 83333 CDS NP_417526.1 16130950 947554 complement(3197686..3198987) 1 NC_000913.2 predicted adenylate cyclase 3198987 ygiF 947554 ygiF Escherichia coli K12 predicted adenylate cyclase NP_417526.1 3197686 R 83333 CDS NP_417527.1 16130951 947555 3199229..3199849 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted signal transduction protein (SH3 domain) 3199849 htrG 947555 htrG Escherichia coli K12 predicted signal transduction protein (SH3 domain) NP_417527.1 3199229 D 83333 CDS NP_417528.1 16130952 947553 3199913..3201151 1 NC_000913.2 tRNA nucleotidyl transferase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase 3201151 cca 947553 cca Escherichia coli K12 fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase NP_417528.1 3199913 D 83333 CDS NP_417529.1 16130953 947551 complement(3201332..3202153) 1 NC_000913.2 bacitracin resistance; possibly phosphorylates undecaprenol; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; undecaprenyl pyrophosphate phosphatase 3202153 bacA 947551 bacA Escherichia coli K12 undecaprenyl pyrophosphate phosphatase NP_417529.1 3201332 R 83333 CDS NP_417530.2 90111533 947544 complement(3202243..3202611) 1 NC_000913.2 putative kinase; GO_process: folic acid biosynthetic process [goid 0046656]; bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase 3202611 folB 947544 folB Escherichia coli K12 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase NP_417530.2 3202243 R 83333 CDS NP_417531.1 16130955 947561 3202716..3203333 1 NC_000913.2 conserved inner membrane protein 3203333 ygiH 947561 ygiH Escherichia coli K12 conserved inner membrane protein NP_417531.1 3202716 D 83333 CDS NP_417532.1 16130956 947562 complement(3203346..3204278) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3204278 ttdR 947562 ttdR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417532.1 3203346 R 83333 CDS NP_417533.1 16130957 947565 3204485..3205396 1 NC_000913.2 L-tartrate dehydratase, subunit A; GO_process: fermentation [goid 0006113]; L-tartrate dehydratase, alpha subunit 3205396 ttdA 947565 ttdA Escherichia coli K12 L-tartrate dehydratase, alpha subunit NP_417533.1 3204485 D 83333 CDS NP_417534.1 16130958 947568 3205393..3205998 1 NC_000913.2 L-tartrate dehydratase, subunit B; GO_process: fermentation [goid 0006113]; L-tartrate dehydratase, beta subunit 3205998 ttdB 947568 ttdB Escherichia coli K12 L-tartrate dehydratase, beta subunit NP_417534.1 3205393 D 83333 CDS NP_417535.1 16130959 947576 3206046..3207509 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted tartrate:succinate antiporter 3207509 ttdT 947576 ttdT Escherichia coli K12 predicted tartrate:succinate antiporter NP_417535.1 3206046 D 83333 CDS NP_417536.1 16130960 947578 complement(3207552..3208565) 1 NC_000913.2 putative O-sialoglycoprotein endopeptidase; predicted peptidase 3208565 ygjD 947578 ygjD Escherichia coli K12 predicted peptidase NP_417536.1 3207552 R 83333 CDS NP_417537.1 16130961 947577 3208803..3209018 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S21 3209018 rpsU 947577 rpsU Escherichia coli K12 30S ribosomal subunit protein S21 NP_417537.1 3208803 D 83333 CDS NP_417538.1 16130962 947570 3209129..3210874 1 NC_000913.2 DNA biosynthesis; DNA primase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA primase 3210874 dnaG 947570 dnaG Escherichia coli K12 DNA primase NP_417538.1 3209129 D 83333 CDS NP_417539.1 16130963 947567 3211069..3212910 1 NC_000913.2 RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, sigma 70 (sigma D) factor 3212910 rpoD 947567 rpoD Escherichia coli K12 RNA polymerase, sigma 70 (sigma D) factor NP_417539.1 3211069 D 83333 CDS NP_417540.1 16130964 947560 complement(3212989..3213495) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; G/U mismatch-specific DNA glycosylase 3213495 mug 947560 mug Escherichia coli K12 G/U mismatch-specific DNA glycosylase NP_417540.1 3212989 R 83333 CDS NP_417541.1 16130965 947582 complement(3213749..3214513) 1 NC_000913.2 predicted siderophore interacting protein 3214513 yqjH 947582 yqjH Escherichia coli K12 predicted siderophore interacting protein NP_417541.1 3213749 R 83333 CDS NP_417542.1 16130966 947584 3214801..3215424 1 NC_000913.2 predicted transcriptional regulator 3215424 yqjI 947584 yqjI Escherichia coli K12 predicted transcriptional regulator NP_417542.1 3214801 D 83333 CDS NP_417543.1 16130967 945301 complement(3215578..3217098) 1 NC_000913.2 aerotaxis sensor receptor, flavoprotein; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: taxis [goid 0042330]; fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component 3217098 aer 945301 aer Escherichia coli K12 fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component NP_417543.1 3215578 R 83333 CDS NP_417544.5 145698310 947120 3217516..3218895 1 NC_000913.2 probable ornithine aminotransferase; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: pyridoxine biosynthetic process [goid 0008615]; putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent 3218895 ygjG 947120 ygjG Escherichia coli K12 putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent NP_417544.5 3217516 D 83333 CDS NP_417545.1 16130969 946251 complement(3218937..3219269) 1 NC_000913.2 putative tRNA synthetase; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; conserved protein 3219269 ygjH 946251 ygjH Escherichia coli K12 conserved protein NP_417545.1 3218937 R 83333 CDS NP_417546.1 16130970 947586 3219488..3220471 1 NC_000913.2 regulator of ebg operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3220471 ebgR 947586 ebgR Escherichia coli K12 DNA-binding transcriptional repressor NP_417546.1 3219488 D 83333 CDS YP_026199.1 49176308 947583 3220655..3223747 1 NC_000913.2 evolved beta-D-galactosidase, alpha subunit; cryptic gene; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic beta-D-galactosidase, alpha subunit 3223747 ebgA 947583 ebgA Escherichia coli K12 cryptic beta-D-galactosidase, alpha subunit YP_026199.1 3220655 D 83333 CDS NP_417548.1 16130972 947581 3223744..3224193 1 NC_000913.2 evolved beta-D-galactosidase, beta subunit; cryptic gene; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic beta-D-galactosidase, beta subunit 3224193 ebgC 947581 ebgC Escherichia coli K12 cryptic beta-D-galactosidase, beta subunit NP_417548.1 3223744 D 83333 CDS YP_026200.1 49176309 947579 3224256..3225689 1 NC_000913.2 putative oxidoreductase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3225689 ygjI 947579 ygjI Escherichia coli K12 predicted transporter YP_026200.1 3224256 D 83333 CDS NP_417550.1 16130974 947597 3225823..3226893 1 NC_000913.2 conserved protein 3226893 ygjJ 947597 ygjJ Escherichia coli K12 conserved protein NP_417550.1 3225823 D 83333 CDS NP_417551.1 16130975 947596 3226910..3229261 1 NC_000913.2 putative isomerase; predicted glycosyl hydrolase 3229261 ygjK 947596 ygjK Escherichia coli K12 predicted glycosyl hydrolase NP_417551.1 3226910 D 83333 CDS NP_417552.1 16130976 947594 3229687..3231705 1 NC_000913.2 GO_process: fatty acid oxidation [goid 0019395]; 2,4-dienoyl-CoA reductase, NADH and FMN-linked 3231705 fadH 947594 fadH Escherichia coli K12 2,4-dienoyl-CoA reductase, NADH and FMN-linked NP_417552.1 3229687 D 83333 CDS NP_417553.1 16130977 947593 complement(3231750..3232166) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 3232166 ygjM 947593 ygjM Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417553.1 3231750 R 83333 CDS NP_417554.1 16130978 947591 complement(3232163..3232477) 1 NC_000913.2 conserved protein 3232477 ygjN 947591 ygjN Escherichia coli K12 conserved protein NP_417554.1 3232163 R 83333 CDS NP_417555.4 90111535 947589 complement(3232761..3233897) 1 NC_000913.2 putative enzyme; predicted methyltransferase small domain 3233897 rlmG 947589 rlmG Escherichia coli K12 predicted methyltransferase small domain NP_417555.4 3232761 R 83333 CDS NP_417556.2 90111536 947650 3233982..3234485 1 NC_000913.2 predicted metal dependent hydrolase 3234485 ygjP 947650 ygjP Escherichia coli K12 predicted metal dependent hydrolase NP_417556.2 3233982 D 83333 CDS NP_417557.1 16130981 947598 3234562..3235254 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted thioredoxin-like protein 3235254 ygjQ 947598 ygjQ Escherichia coli K12 predicted thioredoxin-like protein NP_417557.1 3234562 D 83333 CDS NP_417558.2 145698311 947600 3235333..3236319 1 NC_000913.2 predicted NAD(P)-binding dehydrogenase 3236319 ygjR 947600 ygjR Escherichia coli K12 predicted NAD(P)-binding dehydrogenase NP_417558.2 3235333 D 83333 CDS YP_026201.1 49176311 947607 3236602..3237567 1 NC_000913.2 putative transport protein; GO_process: response to stress [goid 0006950]; predicted inner membrane protein, part of terminus 3237567 alx 947607 alx Escherichia coli K12 predicted inner membrane protein, part of terminus YP_026201.1 3236602 D 83333 CDS NP_417560.1 16130984 947605 3237966..3239210 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-serine biosynthetic process [goid 0006564]; GO_process: threonine biosynthetic process [goid 0009088]; sodium:serine/threonine symporter 3239210 sstT 947605 sstT Escherichia coli K12 sodium:serine/threonine symporter NP_417560.1 3237966 D 83333 CDS NP_417561.1 16130985 947604 complement(3239215..3239766) 1 NC_000913.2 conserved inner membrane protein 3239766 ygjV 947604 ygjV Escherichia coli K12 conserved inner membrane protein NP_417561.1 3239215 R 83333 CDS NP_417562.1 16130986 947603 complement(3239849..3241336) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; altronate hydrolase 3241336 uxaA 947603 uxaA Escherichia coli K12 altronate hydrolase NP_417562.1 3239849 R 83333 CDS NP_417563.1 16130987 947599 complement(3241351..3242763) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; uronate isomerase 3242763 uxaC 947599 uxaC Escherichia coli K12 uronate isomerase NP_417563.1 3241351 R 83333 CDS NP_417564.1 16130988 947601 3243126..3244544 1 NC_000913.2 transport of hexuronates; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; hexuronate transporter 3244544 exuT 947601 exuT Escherichia coli K12 hexuronate transporter NP_417564.1 3243126 D 83333 CDS NP_417565.2 90111537 947602 3244674..3245450 1 NC_000913.2 negative regulator of exu regulon, exuT, uxaAC, and uxuB; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3245450 exuR 947602 exuR Escherichia coli K12 DNA-binding transcriptional repressor NP_417565.2 3244674 D 83333 CDS NP_417566.1 16130990 947643 3245795..3246457 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3246457 yqjA 947643 yqjA Escherichia coli K12 conserved inner membrane protein NP_417566.1 3245795 D 83333 CDS NP_417567.1 16130991 947619 3246461..3246844 1 NC_000913.2 conserved protein 3246844 yqjB 947619 yqjB Escherichia coli K12 conserved protein NP_417567.1 3246461 D 83333 CDS NP_417568.2 90111538 947622 3246991..3247359 1 NC_000913.2 conserved protein 3247359 yqjC 947622 yqjC Escherichia coli K12 conserved protein NP_417568.2 3246991 D 83333 CDS NP_417569.1 16130993 947614 3247397..3247702 1 NC_000913.2 conserved protein 3247702 yqjD 947614 yqjD Escherichia coli K12 conserved protein NP_417569.1 3247397 D 83333 CDS NP_417570.1 16130994 947611 3247705..3248109 1 NC_000913.2 conserved inner membrane protein 3248109 yqjE 947611 yqjE Escherichia coli K12 conserved inner membrane protein NP_417570.1 3247705 D 83333 CDS NP_417571.1 16130995 947610 3248099..3248398 1 NC_000913.2 conserved protein 3248398 yqjK 947610 yqjK Escherichia coli K12 conserved protein NP_417571.1 3248099 D 83333 CDS NP_417572.2 90111539 947608 3248584..3248976 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted quinol oxidase subunit 3248976 yqjF 947608 yqjF Escherichia coli K12 predicted quinol oxidase subunit NP_417572.2 3248584 D 83333 CDS NP_417573.1 16130997 947615 3249046..3250032 1 NC_000913.2 putative transferase; predicted S-transferase 3250032 yqjG 947615 yqjG Escherichia coli K12 predicted S-transferase NP_417573.1 3249046 D 83333 CDS NP_417574.1 16130998 947617 3250326..3250691 1 NC_000913.2 putative cytochrome; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3250691 yhaH 947617 yhaH Escherichia coli K12 predicted inner membrane protein NP_417574.1 3250326 D 83333 CDS NP_417575.1 16130999 947612 3250933..3251289 1 NC_000913.2 putative cytochrome; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3251289 yhaI 947612 yhaI Escherichia coli K12 predicted inner membrane protein NP_417575.1 3250933 D 83333 CDS NP_417576.1 16131000 947621 complement(3251340..3252236) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3252236 yhaJ 947621 yhaJ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417576.1 3251340 R 83333 CDS NP_417577.1 16131001 947620 3252341..3253042 1 NC_000913.2 predicted pirin-related protein 3253042 yhaK 947620 yhaK Escherichia coli K12 predicted pirin-related protein NP_417577.1 3252341 D 83333 CDS NP_417578.2 90111540 947618 3253065..3253229 1 NC_000913.2 predicted protein 3253229 yhaL 947618 yhaL Escherichia coli K12 predicted protein NP_417578.2 3253065 D 83333 CDS YP_026202.1 49176312 2847723 complement(3253363..3254673) 1 NC_000913.2 conserved hypothetical protein; conserved protein 3254673 yhaM 2847723 yhaM Escherichia coli K12 conserved protein YP_026202.1 3253363 R 83333 CDS YP_026203.3 145698312 947628 complement(3254701..3256032) 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3256032 yhaO 947628 yhaO Escherichia coli K12 predicted transporter YP_026203.3 3254701 R 83333 CDS YP_026204.1 49176314 2847724 complement(3256307..3257671) 1 NC_000913.2 L-serine dehydratase; GO_process: amino acid catabolic process [goid 0009063]; L-serine dehydratase 3 3257671 tdcG 2847724 tdcG Escherichia coli K12 L-serine dehydratase 3 YP_026204.1 3256307 R 83333 CDS NP_417583.4 90111542 947624 complement(3257743..3258132) 1 NC_000913.2 predicted L-PSP (mRNA) endoribonuclease 3258132 tdcF 947624 tdcF Escherichia coli K12 predicted L-PSP (mRNA) endoribonuclease NP_417583.4 3257743 R 83333 CDS YP_026205.1 49176316 947623 complement(3258146..3260440) 1 NC_000913.2 probable formate acetyltransferase 3; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; pyruvate formate-lyase 4/2-ketobutyrate formate-lyase 3260440 tdcE 947623 tdcE Escherichia coli K12 pyruvate formate-lyase 4/2-ketobutyrate formate-lyase YP_026205.1 3258146 R 83333 CDS NP_417585.2 145698313 947635 complement(3260474..3261682) 1 NC_000913.2 propionate kinase/acetate kinase II, anaerobic; GO_process: amino acid catabolic process [goid 0009063]; propionate kinase/acetate kinase C, anaerobic 3261682 tdcD 947635 tdcD Escherichia coli K12 propionate kinase/acetate kinase C, anaerobic NP_417585.2 3260474 R 83333 CDS NP_417586.1 16131009 947629 complement(3261708..3263039) 1 NC_000913.2 anaerobically inducible L-threonine, L-serine permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: threonine biosynthetic process [goid 0009088]; L-threonine/L-serine transporter 3263039 tdcC 947629 tdcC Escherichia coli K12 L-threonine/L-serine transporter NP_417586.1 3261708 R 83333 CDS NP_417587.1 16131010 947633 complement(3263061..3264050) 1 NC_000913.2 threonine dehydratase, catabolic; GO_process: amino acid catabolic process [goid 0009063]; catabolic threonine dehydratase, PLP-dependent 3264050 tdcB 947633 tdcB Escherichia coli K12 catabolic threonine dehydratase, PLP-dependent NP_417587.1 3263061 R 83333 CDS NP_417588.1 16131011 947494 complement(3264149..3265087) 1 NC_000913.2 transcriptional activator of tdc operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 3265087 tdcA 947494 tdcA Escherichia coli K12 DNA-binding transcriptional activator NP_417588.1 3264149 R 83333 CDS NP_417589.4 162135908 944907 3265402..3265620 1 NC_000913.2 threonine dehydratase operon activator protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 3265620 tdcR 944907 tdcR Escherichia coli K12 DNA-binding transcriptional activator NP_417589.4 3265402 D 83333 CDS NP_417590.2 90111544 947705 3265876..3266415 1 NC_000913.2 predicted protein 3266415 yhaB 947705 yhaB Escherichia coli K12 predicted protein NP_417590.2 3265876 D 83333 CDS NP_417591.1 16131014 947557 3266437..3267624 1 NC_000913.2 predicted protein 3267624 yhaC 947557 yhaC Escherichia coli K12 predicted protein NP_417591.1 3266437 D 83333 CDS NP_417593.4 145698314 947632 complement(3268647..3269792) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; glycerate kinase I 3269792 garK 947632 garK Escherichia coli K12 glycerate kinase I NP_417593.4 3268647 R 83333 CDS NP_417594.3 145698315 947631 complement(3269889..3270773) 1 NC_000913.2 tartronate semialdehyde reductase (TSAR); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glycolate metabolic process [goid 0009441]; tartronate semialdehyde reductase 3270773 garR 947631 garR Escherichia coli K12 tartronate semialdehyde reductase NP_417594.3 3269889 R 83333 CDS NP_417595.1 16131018 947630 complement(3270809..3271579) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; alpha-dehydro-beta-deoxy-D-glucarate aldolase 3271579 garL 947630 garL Escherichia coli K12 alpha-dehydro-beta-deoxy-D-glucarate aldolase NP_417595.1 3270809 R 83333 CDS NP_417596.1 16131019 947642 complement(3271595..3272929) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted (D)-galactarate transporter 3272929 garP 947642 garP Escherichia coli K12 predicted (D)-galactarate transporter NP_417596.1 3271595 R 83333 CDS NP_417597.1 16131020 947641 3273304..3274875 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; (D)-galactarate dehydrogenase 3274875 garD 947641 garD Escherichia coli K12 (D)-galactarate dehydrogenase NP_417597.1 3273304 D 83333 CDS NP_417598.1 16131021 947639 3275024..3275359 1 NC_000913.2 putative protease; htrA suppressor protein; predicted regulator 3275359 sohA 947639 sohA Escherichia coli K12 predicted regulator NP_417598.1 3275024 D 83333 CDS NP_417599.1 16131022 947638 3275359..3275823 1 NC_000913.2 conserved protein 3275823 yhaV 947638 yhaV Escherichia coli K12 conserved protein NP_417599.1 3275359 D 83333 CDS NP_417600.1 16131023 947636 complement(3275878..3276687) 1 NC_000913.2 putative DEOR-type transcriptional regulator of aga operon; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: amino sugar biosynthetic process [goid 0046349]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3276687 agaR 947636 agaR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417600.1 3275878 R 83333 CDS NP_417601.1 16131024 947637 3276936..3278216 1 NC_000913.2 putative tagatose 6-phosphate kinase 2; GO_process: carbohydrate catabolic process [goid 0016052]; tagatose 6-phosphate aldolase 1, kbaZ subunit 3278216 kbaZ 947637 kbaZ Escherichia coli K12 tagatose 6-phosphate aldolase 1, kbaZ subunit NP_417601.1 3276936 D 83333 CDS NP_417602.4 90111546 947648 3278239..3278712 1 NC_000913.2 PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA); GO_component: cytoplasm [goid 0005737]; GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylgalactosamine-specific enzyme IIB component of PTS 3278712 agaV 947648 agaV Escherichia coli K12 N-acetylgalactosamine-specific enzyme IIB component of PTS NP_417602.4 3278239 D 83333 CDS b3134 947647 3278723..3279097 1 NC_000913.2 N-acetylgalactosamine-specific enzyme IIC component of PTS, fragment (pseudogene);enzyme; Central intermediary metabolism: Amino sugars PTS system N-acetylgalactosameine-specific IIC component 2; GO_process: amino sugar biosynthetic process [goid 0046349]; 3279097 agaW 947647 agaW Escherichia coli K12 3278723 D 83333 CDS b3135 947646 3279093..3279647 1 NC_000913.2 pseudogene, predicted truncated N-acetylgalactosamine-6-phosphate deacetylase putative N-acetylgalactosamine-6-phosphate deacetylase; 3279647 agaA 947646 agaA Escherichia coli K12 3279093 D 83333 CDS NP_417605.1 16131028 947645 3279998..3281152 1 NC_000913.2 putative tagatose-6-phosphate aldose/ketose isomerase; tagatose-6-phosphate ketose/aldose isomerase 3281152 agaS 947645 agaS Escherichia coli K12 tagatose-6-phosphate ketose/aldose isomerase NP_417605.1 3279998 D 83333 CDS NP_417606.1 16131029 947644 3281165..3282025 1 NC_000913.2 tagatose-bisphosphate aldolase 2; GO_process: carbohydrate catabolic process [goid 0016052]; tagatose 6-phosphate aldolase 1, kbaY subunit 3282025 kbaY 947644 kbaY Escherichia coli K12 tagatose 6-phosphate aldolase 1, kbaY subunit NP_417606.1 3281165 D 83333 CDS NP_417607.1 16131030 947653 3282192..3282668 1 NC_000913.2 PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA); GO_component: cytoplasm [goid 0005737]; N-acetylgalactosamine-specific enzyme IIB component of PTS 3282668 agaB 947653 agaB Escherichia coli K12 N-acetylgalactosamine-specific enzyme IIB component of PTS NP_417607.1 3282192 D 83333 CDS NP_417608.1 16131031 947652 3282707..3283510 1 NC_000913.2 PTS system N-acetylgalactosamine-specific IIC component 1; N-acetylgalactosamine-specific enzyme IIC component of PTS 3283510 agaC 947652 agaC Escherichia coli K12 N-acetylgalactosamine-specific enzyme IIC component of PTS NP_417608.1 3282707 D 83333 CDS NP_417609.1 16131032 947649 3283500..3284291 1 NC_000913.2 PTS system, N-acetylglucosamine enzyme IID component 1; GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylgalactosamine-specific enzyme IID component of PTS 3284291 agaD 947649 agaD Escherichia coli K12 N-acetylgalactosamine-specific enzyme IID component of PTS NP_417609.1 3283500 D 83333 CDS NP_417610.1 16131033 947985 3284292..3285047 1 NC_000913.2 putative galactosamine-6-phosphate isomerase; galactosamine-6-phosphate isomerase 3285047 agaI 947985 agaI Escherichia coli K12 galactosamine-6-phosphate isomerase NP_417610.1 3284292 D 83333 CDS NP_417611.1 16131034 947658 3285448..3286032 1 NC_000913.2 putative fimbrial-like protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 3286032 yraH 947658 yraH Escherichia coli K12 predicted fimbrial-like adhesin protein NP_417611.1 3285448 D 83333 CDS NP_417612.1 16131035 947657 3286112..3286807 1 NC_000913.2 putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic pilin chaperone 3286807 yraI 947657 yraI Escherichia coli K12 predicted periplasmic pilin chaperone NP_417612.1 3286112 D 83333 CDS NP_417613.1 16131036 947656 3286836..3289352 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 3289352 yraJ 947656 yraJ Escherichia coli K12 predicted outer membrane protein NP_417613.1 3286836 D 83333 CDS NP_417614.1 16131037 947654 3289363..3290454 1 NC_000913.2 putative fimbrial protein; GO_component: fimbrium [goid 0009289]; predicted fimbrial-like adhesin protein 3290454 yraK 947654 yraK Escherichia coli K12 predicted fimbrial-like adhesin protein NP_417614.1 3289363 D 83333 CDS NP_417615.1 16131038 947664 complement(3290497..3291357) 1 NC_000913.2 predicted methyltransferase 3291357 yraL 947664 yraL Escherichia coli K12 predicted methyltransferase NP_417615.1 3290497 R 83333 CDS NP_417616.1 16131039 947663 3291422..3293458 1 NC_000913.2 putative glycosylase; conserved protein 3293458 yraM 947663 yraM Escherichia coli K12 conserved protein NP_417616.1 3291422 D 83333 CDS NP_417617.1 16131040 947662 3293416..3293811 1 NC_000913.2 conserved protein 3293811 yraN 947662 yraN Escherichia coli K12 conserved protein NP_417617.1 3293416 D 83333 CDS NP_417618.1 16131041 947661 3293831..3294421 1 NC_000913.2 DnaA initiator-associating factor for replication initiation 3294421 diaA 947661 diaA Escherichia coli K12 DnaA initiator-associating factor for replication initiation NP_417618.1 3293831 D 83333 CDS NP_417619.1 16131042 947659 3294431..3295006 1 NC_000913.2 putative periplasmic protein; GO_component: periplasmic space [goid 0042597]; predicted protein 3295006 yraP 947659 yraP Escherichia coli K12 predicted protein NP_417619.1 3294431 D 83333 CDS NP_417620.1 16131043 947668 complement(3295120..3296160) 1 NC_000913.2 predicted permease 3296160 yraQ 947668 yraQ Escherichia coli K12 predicted permease NP_417620.1 3295120 R 83333 CDS NP_417621.2 90111547 947667 complement(3296233..3296868) 1 NC_000913.2 predicted nucleoside-diphosphate-sugar epimerase 3296868 yraR 947667 yraR Escherichia coli K12 predicted nucleoside-diphosphate-sugar epimerase NP_417621.2 3296233 R 83333 CDS NP_417622.2 90111548 947666 3296996..3297514 1 NC_000913.2 predicted intracellular protease 3297514 yhbO 947666 yhbO Escherichia coli K12 predicted intracellular protease NP_417622.2 3296996 D 83333 CDS NP_417623.1 16131046 947665 complement(3297494..3297937) 1 NC_000913.2 conserved protein 3297937 yhbP 947665 yhbP Escherichia coli K12 conserved protein NP_417623.1 3297494 R 83333 CDS NP_417624.1 16131047 947671 3297988..3298290 1 NC_000913.2 predicted endonuclease 3298290 yhbQ 947671 yhbQ Escherichia coli K12 predicted endonuclease NP_417624.1 3297988 D 83333 CDS NP_417625.1 16131048 947670 complement(3298277..3298780) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted acyltransferase with acyl-CoA N-acyltransferase domain 3298780 yhbS 947670 yhbS Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_417625.1 3298277 R 83333 CDS NP_417626.1 16131049 947669 complement(3298774..3299298) 1 NC_000913.2 predicted lipid carrier protein 3299298 yhbT 947669 yhbT Escherichia coli K12 predicted lipid carrier protein NP_417626.1 3298774 R 83333 CDS NP_417627.1 16131050 949115 3299507..3300502 1 NC_000913.2 putative collagenase; predicted peptidase (collagenase-like) 3300502 yhbU 949115 yhbU Escherichia coli K12 predicted peptidase (collagenase-like) NP_417627.1 3299507 D 83333 CDS NP_417628.2 90111549 949117 3300511..3301389 1 NC_000913.2 predicted protease 3301389 yhbV 949117 yhbV Escherichia coli K12 predicted protease NP_417628.2 3300511 D 83333 CDS NP_417629.1 16131052 947677 3301470..3302477 1 NC_000913.2 putative enzyme; predicted enzyme 3302477 yhbW 947677 yhbW Escherichia coli K12 predicted enzyme NP_417629.1 3301470 D 83333 CDS NP_417630.1 16131053 947675 complement(3302595..3303839) 1 NC_000913.2 tryptophan-specific transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan transporter of high affinity 3303839 mtr 947675 mtr Escherichia coli K12 tryptophan transporter of high affinity NP_417630.1 3302595 R 83333 CDS NP_417631.2 90111550 947674 complement(3303993..3305882) 1 NC_000913.2 inducible ATP-independent RNA helicase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ATP-dependent RNA helicase 3305882 deaD 947674 deaD Escherichia coli K12 ATP-dependent RNA helicase NP_417631.2 3303993 R 83333 CDS NP_417632.1 16131055 947673 complement(3306062..3306946) 1 NC_000913.2 conserved protein 3306946 nlpI 947673 nlpI Escherichia coli K12 conserved protein NP_417632.1 3306062 R 83333 CDS NP_417633.4 145698316 947672 complement(3307055..3309190) 1 NC_000913.2 polynucleotide phosphorylase; cytidylate kinase activity; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; polynucleotide phosphorylase/polyadenylase 3309190 pnp 947672 pnp Escherichia coli K12 polynucleotide phosphorylase/polyadenylase NP_417633.4 3307055 R 83333 CDS NP_417634.1 16131057 947686 complement(3309437..3309706) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S15 3309706 rpsO 947686 rpsO Escherichia coli K12 30S ribosomal subunit protein S15 NP_417634.1 3309437 R 83333 CDS NP_417635.1 16131058 947687 complement(3309855..3310799) 1 NC_000913.2 tRNA pseudouridine 5S synthase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA pseudouridine synthase 3310799 truB 947687 truB Escherichia coli K12 tRNA pseudouridine synthase NP_417635.1 3309855 R 83333 CDS NP_417636.1 16131059 947685 complement(3310799..3311200) 1 NC_000913.2 ribosome-binding factor A; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 30s ribosome binding factor 3311200 rbfA 947685 rbfA Escherichia coli K12 30s ribosome binding factor NP_417636.1 3310799 R 83333 CDS NP_417637.1 16131060 947684 complement(3311364..3314036) 1 NC_000913.2 protein chain initiation factor IF-2; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; fused protein chain initiation factor 2, IF2: membrane protein/conserved protein 3314036 infB 947684 infB Escherichia coli K12 fused protein chain initiation factor 2, IF2: membrane protein/conserved protein NP_417637.1 3311364 R 83333 CDS NP_417638.1 16131061 947682 complement(3314061..3315548) 1 NC_000913.2 transcription pausing; L factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; transcription termination/antitermination L factor 3315548 nusA 947682 nusA Escherichia coli K12 transcription termination/antitermination L factor NP_417638.1 3314061 R 83333 CDS NP_417639.5 145698317 947680 complement(3315576..3316034) 1 NC_000913.2 conserved protein 3316034 yhbC 947680 yhbC Escherichia coli K12 conserved protein NP_417639.5 3315576 R 83333 CDS NP_417640.1 16131063 947590 3316659..3318002 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; argininosuccinate synthetase 3318002 argG 947590 argG Escherichia coli K12 argininosuccinate synthetase NP_417640.1 3316659 D 83333 CDS NP_417641.4 90111552 947711 complement(3318010..3319635) 1 NC_000913.2 putative alkaline phosphatase I; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted hydrolase, inner membrane 3319635 yhbX 947711 yhbX Escherichia coli K12 predicted hydrolase, inner membrane NP_417641.4 3318010 R 83333 CDS NP_417642.1 16131065 947720 complement(3320195..3320527) 1 NC_000913.2 protein export - membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; preprotein translocase membrane subunit 3320527 secG 947720 secG Escherichia coli K12 preprotein translocase membrane subunit NP_417642.1 3320195 R 83333 CDS NP_417643.1 16131066 947692 complement(3320755..3322092) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; GO_process: glucose metabolic process [goid 0006006]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; phosphoglucosamine mutase 3322092 glmM 947692 glmM Escherichia coli K12 phosphoglucosamine mutase NP_417643.1 3320755 R 83333 CDS NP_417644.4 90111553 947691 complement(3322085..3322933) 1 NC_000913.2 GO_process: folic acid biosynthetic process [goid 0046656]; 7,8-dihydropteroate synthase 3322933 folP 947691 folP Escherichia coli K12 7,8-dihydropteroate synthase NP_417644.4 3322085 R 83333 CDS NP_417645.1 16131068 947690 complement(3323023..3324957) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; protease, ATP-dependent zinc-metallo 3324957 hflB 947690 hflB Escherichia coli K12 protease, ATP-dependent zinc-metallo NP_417645.1 3323023 R 83333 CDS NP_417646.1 16131069 947689 complement(3325057..3325686) 1 NC_000913.2 23S rRNA methyltransferase 3325686 rrmJ 947689 rrmJ Escherichia coli K12 23S rRNA methyltransferase NP_417646.1 3325057 R 83333 CDS NP_417647.1 16131070 947688 3325812..3326105 1 NC_000913.2 predicted RNA-binding protein 3326105 yhbY 947688 yhbY Escherichia coli K12 predicted RNA-binding protein NP_417647.1 3325812 D 83333 CDS NP_417648.4 90111554 947696 complement(3326261..3326737) 1 NC_000913.2 transcription elongation factor: cleaves 3' nucleotide of paused mRNA; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; transcription elongation factor 3326737 greA 947696 greA Escherichia coli K12 transcription elongation factor NP_417648.4 3326261 R 83333 CDS NP_417649.1 16131072 947693 3326985..3328418 1 NC_000913.2 D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; D-alanyl-D-alanine carboxypeptidase 3328418 dacB 947693 dacB Escherichia coli K12 D-alanyl-D-alanine carboxypeptidase NP_417649.1 3326985 D 83333 CDS NP_417650.1 16131073 947694 complement(3328604..3329776) 1 NC_000913.2 putative GTP-binding factor; GTPase involved in cell partioning and DNA repair 3329776 obgE 947694 obgE Escherichia coli K12 GTPase involved in cell partioning and DNA repair NP_417650.1 3328604 R 83333 CDS NP_417651.1 16131074 947699 complement(3329792..3330757) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3330757 yhbE 947699 yhbE Escherichia coli K12 conserved inner membrane protein NP_417651.1 3329792 R 83333 CDS NP_417652.1 16131075 945190 complement(3330884..3331141) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L27 3331141 rpmA 945190 rpmA Escherichia coli K12 50S ribosomal subunit protein L27 NP_417652.1 3330884 R 83333 CDS NP_417653.1 16131076 949057 complement(3331162..3331473) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L21 3331473 rplU 949057 rplU Escherichia coli K12 50S ribosomal subunit protein L21 NP_417653.1 3331162 R 83333 CDS NP_417654.1 16131077 947364 3331732..3332703 1 NC_000913.2 octaprenyl diphosphate synthase 3332703 ispB 947364 ispB Escherichia coli K12 octaprenyl diphosphate synthase NP_417654.1 3331732 D 83333 CDS NP_417655.1 16131078 947960 3332931..3333209 1 NC_000913.2 regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator of maltose metabolism 3333209 sfsB 947960 sfsB Escherichia coli K12 DNA-binding transcriptional activator of maltose metabolism NP_417655.1 3332931 D 83333 CDS NP_417656.1 16131079 947703 complement(3333257..3334516) 1 NC_000913.2 first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3334516 murA 947703 murA Escherichia coli K12 UDP-N-acetylglucosamine 1-carboxyvinyltransferase NP_417656.1 3333257 R 83333 CDS NP_417657.2 90111555 947958 complement(3334571..3334825) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 3334825 yrbA 947958 yrbA Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417657.2 3334571 R 83333 CDS NP_417658.4 90111556 947954 complement(3334985..3335278) 1 NC_000913.2 predicted protein 3335278 yrbB 947954 yrbB Escherichia coli K12 predicted protein NP_417658.4 3334985 R 83333 CDS NP_417659.1 16131082 947710 complement(3335278..3335913) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted ABC-type organic solvent transporter 3335913 yrbC 947710 yrbC Escherichia coli K12 predicted ABC-type organic solvent transporter NP_417659.1 3335278 R 83333 CDS NP_417660.1 16131083 947712 complement(3335932..3336483) 1 NC_000913.2 predicted ABC-type organic solvent transporter 3336483 yrbD 947712 yrbD Escherichia coli K12 predicted ABC-type organic solvent transporter NP_417660.1 3335932 R 83333 CDS NP_417661.1 16131084 947732 complement(3336488..3337270) 1 NC_000913.2 predicted toluene transporter subunit: membrane component of ABC superfamily 3337270 yrbE 947732 yrbE Escherichia coli K12 predicted toluene transporter subunit: membrane component of ABC superfamily NP_417661.1 3336488 R 83333 CDS NP_417662.1 16131085 947729 complement(3337278..3338087) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted toluene transporter subunit: ATP-binding component of ABC superfamily 3338087 yrbF 947729 yrbF Escherichia coli K12 predicted toluene transporter subunit: ATP-binding component of ABC superfamily NP_417662.1 3337278 R 83333 CDS NP_417663.1 16131086 947730 3338297..3339274 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: calcium:sodium antiporter activity [goid 0005432]; predicted calcium/sodium:proton antiporter 3339274 yrbG 947730 yrbG Escherichia coli K12 predicted calcium/sodium:proton antiporter NP_417663.1 3338297 D 83333 CDS NP_417664.1 16131087 947734 3339288..3340274 1 NC_000913.2 putative isomerase; D-arabinose 5-phosphate isomerase 3340274 kdsD 947734 kdsD Escherichia coli K12 D-arabinose 5-phosphate isomerase NP_417664.1 3339288 D 83333 CDS NP_417665.1 16131088 947717 3340295..3340861 1 NC_000913.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 3340861 kdsC 947717 kdsC Escherichia coli K12 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase NP_417665.1 3340295 D 83333 CDS NP_417666.1 16131089 947722 3340858..3341433 1 NC_000913.2 conserved protein 3341433 yrbK 947722 yrbK Escherichia coli K12 conserved protein NP_417666.1 3340858 D 83333 CDS NP_417667.1 16131090 947920 3341402..3341959 1 NC_000913.2 predicted transporter subunit: periplasmic-binding component of ABC superfamily 3341959 lptA 947920 lptA Escherichia coli K12 predicted transporter subunit: periplasmic-binding component of ABC superfamily NP_417667.1 3341402 D 83333 CDS NP_417668.1 16131091 947725 3341966..3342691 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 3342691 lptB 947725 lptB Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_417668.1 3341966 D 83333 CDS NP_417669.1 16131092 947714 3342739..3344172 1 NC_000913.2 RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: transcription [goid 0006350]; RNA polymerase, sigma 54 (sigma N) factor 3344172 rpoN 947714 rpoN Escherichia coli K12 RNA polymerase, sigma 54 (sigma N) factor NP_417669.1 3342739 D 83333 CDS NP_417670.1 16131093 947718 3344195..3344482 1 NC_000913.2 probable sigma-54 modulation protein; GO_process: transcription [goid 0006350]; predicted ribosome-associated, sigma 54 modulation protein 3344482 hpf 947718 hpf Escherichia coli K12 predicted ribosome-associated, sigma 54 modulation protein NP_417670.1 3344195 D 83333 CDS NP_417671.1 16131094 947721 3344600..3345091 1 NC_000913.2 phosphotransferase system enzyme IIA, regulates N metabolism; sugar-specific enzyme IIA component of PTS 3345091 ptsN 947721 ptsN Escherichia coli K12 sugar-specific enzyme IIA component of PTS NP_417671.1 3344600 D 83333 CDS NP_417672.1 16131095 947727 3345137..3345991 1 NC_000913.2 predicted protein with nucleoside triphosphate hydrolase domain 3345991 yhbJ 947727 yhbJ Escherichia coli K12 predicted protein with nucleoside triphosphate hydrolase domain NP_417672.1 3345137 D 83333 CDS NP_417673.1 16131096 947914 3345988..3346260 1 NC_000913.2 phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) 3346260 npr 947914 npr Escherichia coli K12 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) NP_417673.1 3345988 D 83333 CDS NP_417674.1 16131097 947910 3346474..3347106 1 NC_000913.2 predicted protein 3347106 yrbL 947910 yrbL Escherichia coli K12 predicted protein NP_417674.1 3346474 D 83333 CDS NP_417675.1 16131098 947728 complement(3347103..3347831) 1 NC_000913.2 putative peptidoglycan enzyme; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; biosynthetic peptidoglycan transglycosylase 3347831 mtgA 947728 mtgA Escherichia coli K12 biosynthetic peptidoglycan transglycosylase NP_417675.1 3347103 R 83333 CDS NP_417676.2 90111557 947903 complement(3347828..3348481) 1 NC_000913.2 sigma cross-reacting protein 27A (SCRP-27A); isoprenoid biosynthesis protein with amidotransferase-like domain 3348481 elbB 947903 elbB Escherichia coli K12 isoprenoid biosynthesis protein with amidotransferase-like domain NP_417676.2 3347828 R 83333 CDS YP_026207.1 49176326 947887 complement(3348711..3351047) 1 NC_000913.2 aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: protein modification [goid 0006464]; hybrid sensory histidine kinase in two-component regulatory system with ArcA 3351047 arcB 947887 arcB Escherichia coli K12 hybrid sensory histidine kinase in two-component regulatory system with ArcA YP_026207.1 3348711 R 83333 CDS NP_417678.1 16131101 947733 complement(3351143..3352072) 1 NC_000913.2 predicted Fe-S oxidoreductase 3352072 yhcC 947733 yhcC Escherichia coli K12 predicted Fe-S oxidoreductase NP_417678.1 3351143 R 83333 CDS NP_417679.1 16131102 947724 3352654..3357207 1 NC_000913.2 GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: nitrogen compound metabolic process [goid 0006807]; glutamate synthase, large subunit 3357207 gltB 947724 gltB Escherichia coli K12 glutamate synthase, large subunit NP_417679.1 3352654 D 83333 CDS NP_417680.1 16131103 947723 3357220..3358638 1 NC_000913.2 glutamate synthase, small subunit; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: nitrogen compound metabolic process [goid 0006807]; glutamate synthase, 4Fe-4S protein, small subunit 3358638 gltD 947723 gltD Escherichia coli K12 glutamate synthase, 4Fe-4S protein, small subunit NP_417680.1 3357220 D 83333 CDS NP_417681.1 16131104 947746 3359198..3359962 1 NC_000913.2 regulator of gltBDF operon, induction of Ntr enzymes; GO_component: periplasmic space [goid 0042597]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: nitrogen compound metabolic process [goid 0006807]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; periplasmic protein 3359962 gltF 947746 gltF Escherichia coli K12 periplasmic protein NP_417681.1 3359198 D 83333 CDS NP_417682.1 16131105 947741 3360134..3360808 1 NC_000913.2 putative chaperone; GO_process: protein folding [goid 0006457]; predicted periplasmic chaperone protein 3360808 yhcA 947741 yhcA Escherichia coli K12 predicted periplasmic chaperone protein NP_417682.1 3360134 D 83333 CDS NP_417683.1 16131106 947738 3360829..3363210 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein 3363210 yhcD 947738 yhcD Escherichia coli K12 predicted outer membrane protein NP_417683.1 3360829 D 83333 CDS b4569 4056032 join(3363207..3363573,3364773..3364951) 1 NC_000913.2 predicted protein, N-ter fragment (pseudogene) interrupted by IS5; 3364951 yhcE 4056032 yhcE Escherichia coli K12 3363207 D 83333 CDS NP_417685.1 16131108 947743 complement(3363724..3364740) 1 NC_000913.2 IS5 transposase and trans-activator 3364740 insH 947743 insH Escherichia coli K12 IS5 transposase and trans-activator NP_417685.1 3363724 R 83333 CDS NP_417686.1 16131109 947735 3364948..3365664 1 NC_000913.2 putative transcriptional regulator; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 3365664 yhcF 947735 yhcF Escherichia coli K12 predicted transcriptional regulator NP_417686.1 3364948 D 83333 CDS NP_417687.1 16131110 947739 3365849..3366976 1 NC_000913.2 conserved protein 3366976 yhcG 947739 yhcG Escherichia coli K12 conserved protein NP_417687.1 3365849 D 83333 CDS NP_417688.1 16131111 947750 complement(3367036..3367500) 1 NC_000913.2 conserved protein 3367500 yhcH 947750 yhcH Escherichia coli K12 conserved protein NP_417688.1 3367036 R 83333 CDS NP_417689.4 90111558 947757 complement(3367497..3368372) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino sugar biosynthetic process [goid 0046349]; predicted N-acetylmannosamine kinase 3368372 nanK 947757 nanK Escherichia coli K12 predicted N-acetylmannosamine kinase NP_417689.4 3367497 R 83333 CDS NP_417690.1 16131113 947745 complement(3368369..3369058) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino sugar biosynthetic process [goid 0046349]; predicted N-acetylmannosamine-6-P epimerase 3369058 nanE 947745 nanE Escherichia coli K12 predicted N-acetylmannosamine-6-P epimerase NP_417690.1 3368369 R 83333 CDS NP_417691.4 90111559 947740 complement(3369106..3370596) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino sugar biosynthetic process [goid 0046349]; sialic acid transporter 3370596 nanT 947740 nanT Escherichia coli K12 sialic acid transporter NP_417691.4 3369106 R 83333 CDS NP_417692.1 16131115 947742 complement(3370705..3371598) 1 NC_000913.2 N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K-12?; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: amino sugar biosynthetic process [goid 0046349]; N-acetylneuraminate lyase 3371598 nanA 947742 nanA Escherichia coli K12 N-acetylneuraminate lyase NP_417692.1 3370705 R 83333 CDS NP_417693.3 49176329 945468 complement(3371720..3372511) 1 NC_000913.2 GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3372511 nanR 945468 nanR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417693.3 3371720 R 83333 CDS NP_417694.1 16131117 946575 3372891..3374258 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3374258 dcuD 946575 dcuD Escherichia coli K12 predicted transporter NP_417694.1 3372891 D 83333 CDS NP_417695.1 16131118 944774 complement(3374301..3374798) 1 NC_000913.2 stringent starvation protein B; GO_process: response to starvation [goid 0042594]; ClpXP protease specificity-enhancing factor 3374798 sspB 944774 sspB Escherichia coli K12 ClpXP protease specificity-enhancing factor NP_417695.1 3374301 R 83333 CDS NP_417696.1 16131119 944744 complement(3374804..3375442) 1 NC_000913.2 regulator of transcription; stringent starvation protein A; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; GO_process: response to starvation [goid 0042594]; stringent starvation protein A 3375442 sspA 944744 sspA Escherichia coli K12 stringent starvation protein A NP_417696.1 3374804 R 83333 CDS NP_417697.1 16131120 949000 complement(3375837..3376229) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S9 3376229 rpsI 949000 rpsI Escherichia coli K12 30S ribosomal subunit protein S9 NP_417697.1 3375837 R 83333 CDS NP_417698.1 16131121 947828 complement(3376245..3376673) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L13 3376673 rplM 947828 rplM Escherichia coli K12 50S ribosomal subunit protein L13 NP_417698.1 3376245 R 83333 CDS NP_417699.1 16131122 947821 complement(3376892..3378019) 1 NC_000913.2 conserved protein with nucleoside triphosphate hydrolase domain 3378019 yhcM 947821 yhcM Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_417699.1 3376892 R 83333 CDS NP_417700.2 90111560 947815 3378213..3378611 1 NC_000913.2 conserved protein 3378611 yhcB 947815 yhcB Escherichia coli K12 conserved protein NP_417700.2 3378213 D 83333 CDS NP_417701.1 16131124 947812 3378765..3380132 1 NC_000913.2 serine endoprotease; serine endoprotease, periplasmic 3380132 degQ 947812 degQ Escherichia coli K12 serine endoprotease, periplasmic NP_417701.1 3378765 D 83333 CDS NP_417702.1 16131125 947865 3380222..3381289 1 NC_000913.2 protease; GO_component: periplasmic space [goid 0042597]; GO_function: peptidase activity [goid 0008233]; GO_process: proteolysis [goid 0006508]; serine endoprotease, periplasmic 3381289 degS 947865 degS Escherichia coli K12 serine endoprotease, periplasmic NP_417702.1 3380222 D 83333 CDS NP_417703.1 16131126 947854 complement(3381352..3382290) 1 NC_000913.2 malate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; GO_process: gluconeogenesis [goid 0006094]; GO_process: glyoxylate catabolic process [goid 0009436]; malate dehydrogenase, NAD(P)-binding 3382290 mdh 947854 mdh Escherichia coli K12 malate dehydrogenase, NAD(P)-binding NP_417703.1 3381352 R 83333 CDS NP_417704.1 16131127 947861 3382725..3383195 1 NC_000913.2 repressor of arg regulon; cer-mediated site specific recombination; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator, L-arginine-binding 3383195 argR 947861 argR Escherichia coli K12 DNA-binding transcriptional dual regulator, L-arginine-binding NP_417704.1 3382725 D 83333 CDS NP_417705.2 90111561 947835 3383560..3383823 1 NC_000913.2 conserved protein 3383823 yhcN 947835 yhcN Escherichia coli K12 conserved protein NP_417705.2 3383560 D 83333 CDS NP_417706.1 16131129 947830 complement(3383879..3384151) 1 NC_000913.2 predicted barnase inhibitor 3384151 yhcO 947830 yhcO Escherichia coli K12 predicted barnase inhibitor NP_417706.1 3383879 R 83333 CDS NP_417707.1 16131130 947747 complement(3384243..3386210) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; p-hydroxybenzoic acid efflux system component 3386210 aaeB 947747 aaeB Escherichia coli K12 p-hydroxybenzoic acid efflux system component NP_417707.1 3384243 R 83333 CDS NP_417708.1 16131131 947748 complement(3386216..3387148) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; p-hydroxybenzoic acid efflux system component 3387148 aaeA 947748 aaeA Escherichia coli K12 p-hydroxybenzoic acid efflux system component NP_417708.1 3386216 R 83333 CDS NP_417709.2 90111562 947751 complement(3387156..3387359) 1 NC_000913.2 membrane protein of efflux system 3387359 aaeX 947751 aaeX Escherichia coli K12 membrane protein of efflux system NP_417709.2 3387156 R 83333 CDS NP_417710.1 16131133 947760 3387542..3388471 1 NC_000913.2 GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator, efflux system 3388471 aaeR 947760 aaeR Escherichia coli K12 predicted DNA-binding transcriptional regulator, efflux system NP_417710.1 3387542 D 83333 CDS NP_417711.1 16131134 947749 complement(3388605..3390050) 1 NC_000913.2 suppresses inhibitory activity of CsrA; predicted peptidase 3390050 tldD 947749 tldD Escherichia coli K12 predicted peptidase NP_417711.1 3388605 R 83333 CDS YP_026208.1 49176330 2847740 complement(3390480..3394280) 1 NC_000913.2 conserved membrane protein, predicted transporter 3394280 yhdP 2847740 yhdP Escherichia coli K12 conserved membrane protein, predicted transporter YP_026208.1 3390480 R 83333 CDS NP_417713.2 90111563 947744 complement(3394348..3395817) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; ribonuclease G 3395817 rng 947744 rng Escherichia coli K12 ribonuclease G NP_417713.2 3394348 R 83333 CDS NP_417714.1 16131136 947753 complement(3395807..3396400) 1 NC_000913.2 conserved protein 3396400 yhdE 947753 yhdE Escherichia coli K12 conserved protein NP_417714.1 3395807 R 83333 CDS NP_417715.1 16131137 947756 complement(3396409..3396897) 1 NC_000913.2 rod shape-determining protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; cell wall structural complex MreBCD transmembrane component MreD 3396897 mreD 947756 mreD Escherichia coli K12 cell wall structural complex MreBCD transmembrane component MreD NP_417715.1 3396409 R 83333 CDS NP_417716.1 16131138 947655 complement(3396897..3398000) 1 NC_000913.2 rod shape-determining protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; cell wall structural complex MreBCD transmembrane component MreC 3398000 mreC 947655 mreC Escherichia coli K12 cell wall structural complex MreBCD transmembrane component MreC NP_417716.1 3396897 R 83333 CDS NP_417717.2 90111564 948588 complement(3398066..3399109) 1 NC_000913.2 regulator of ftsI, penicillin binding protein 3, septation function; GO_process: response to drug [goid 0042493]; cell wall structural complex MreBCD, actin-like component MreB 3399109 mreB 948588 mreB Escherichia coli K12 cell wall structural complex MreBCD, actin-like component MreB NP_417717.2 3398066 R 83333 CDS NP_417718.1 16131140 947702 complement(3399414..3401354) 1 NC_000913.2 conserved inner membrane protein 3401354 csrD 947702 csrD Escherichia coli K12 conserved inner membrane protein NP_417718.1 3399414 R 83333 CDS NP_417719.1 16131141 947848 3401506..3402480 1 NC_000913.2 putative dehydrogenase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 3402480 yhdH 947848 yhdH Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_417719.1 3401506 D 83333 CDS b4646 5625572 join(3402666..3402755,3402754..3403053) 1 NC_000913.2 pseudogene, yedZ paralog; 3403053 yrdE 5625572 yrdE Escherichia coli K12 3402666 D 83333 CDS NP_417721.1 16131143 947758 3403458..3403928 1 NC_000913.2 acetylCoA carboxylase, BCCP subunit; carrier of biotin; GO_process: biotin carboxyl carrier protein biosynthetic process [goid 0042966]; acetyl CoA carboxylase, BCCP subunit 3403928 accB 947758 accB Escherichia coli K12 acetyl CoA carboxylase, BCCP subunit NP_417721.1 3403458 D 83333 CDS NP_417722.1 16131144 947761 3403939..3405288 1 NC_000913.2 acetyl CoA carboxylase, biotin carboxylase subunit; GO_component: cytoplasm [goid 0005737]; acetyl-CoA carboxylase, biotin carboxylase subunit 3405288 accC 947761 accC Escherichia coli K12 acetyl-CoA carboxylase, biotin carboxylase subunit NP_417722.1 3403939 D 83333 CDS NP_417723.1 16131145 947762 3405397..3405639 1 NC_000913.2 conserved inner membrane protein 3405639 yhdT 947762 yhdT Escherichia coli K12 conserved inner membrane protein NP_417723.1 3405397 D 83333 CDS NP_417724.4 90111565 947752 3405629..3407080 1 NC_000913.2 sodium/pantothenate symporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: coenzyme A biosynthetic process [goid 0015937]; pantothenate:sodium symporter 3407080 panF 947752 panF Escherichia coli K12 pantothenate:sodium symporter NP_417724.4 3405629 D 83333 CDS NP_417725.1 16131147 947708 3407092..3407973 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; methylase for 50S ribosomal subunit protein L11 3407973 prmA 947708 prmA Escherichia coli K12 methylase for 50S ribosomal subunit protein L11 NP_417725.1 3407092 D 83333 CDS NP_417726.1 16131148 947707 3408302..3409267 1 NC_000913.2 putative dehydrogenase; tRNA-dihydrouridine synthase B 3409267 dusB 947707 dusB Escherichia coli K12 tRNA-dihydrouridine synthase B NP_417726.1 3408302 D 83333 CDS NP_417727.1 16131149 947697 3409293..3409589 1 NC_000913.2 site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; global DNA-binding transcriptional dual regulator 3409589 fis 947697 fis Escherichia coli K12 global DNA-binding transcriptional dual regulator NP_417727.1 3409293 D 83333 CDS NP_417728.4 90111566 947695 3409675..3410559 1 NC_000913.2 putative methyltransferase; predicted methyltransferase 3410559 yhdJ 947695 yhdJ Escherichia coli K12 predicted methyltransferase NP_417728.4 3409675 D 83333 CDS NP_417729.1 16131151 947700 3410643..3410822 1 NC_000913.2 predicted membrane protein 3410822 yhdU 947700 yhdU Escherichia coli K12 predicted membrane protein NP_417729.1 3410643 D 83333 CDS NP_417730.1 16131152 947704 complement(3410825..3411487) 1 NC_000913.2 putative transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional regulator 3411487 envR 947704 envR Escherichia coli K12 DNA-binding transcriptional regulator NP_417730.1 3410825 R 83333 CDS NP_417731.1 16131153 947706 3411886..3413043 1 NC_000913.2 transmembrane protein affects septum formation and cell membrane permeability; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cytoplasmic membrane lipoprotein 3413043 acrE 947706 acrE Escherichia coli K12 cytoplasmic membrane lipoprotein NP_417731.1 3411886 D 83333 CDS NP_417732.1 16131154 947768 3413055..3416159 1 NC_000913.2 integral transmembrane protein; acridine resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 3416159 acrF 947768 acrF Escherichia coli K12 multidrug efflux system protein NP_417732.1 3413055 D 83333 CDS NP_417733.1 16131155 947767 3416412..3416633 1 NC_000913.2 predicted outer membrane protein 3416633 yhdV 947767 yhdV Escherichia coli K12 predicted outer membrane protein NP_417733.1 3416412 D 83333 CDS b3268 947766 join(3417064..3417129,3417129..3418088) 1 NC_000913.2 predicted amino-acid transporter subunit;putative transport; Not classified putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; 3418088 yhdW 947766 yhdW Escherichia coli K12 3417064 D 83333 CDS YP_026209.1 49176333 947765 3418156..3419337 1 NC_000913.2 putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted amino-acid transporter subunit 3419337 yhdX 947765 yhdX Escherichia coli K12 predicted amino-acid transporter subunit YP_026209.1 3418156 D 83333 CDS NP_417736.2 90111567 947764 3419347..3420450 1 NC_000913.2 putative transport system permease protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted amino-acid transporter subunit 3420450 yhdY 947764 yhdY Escherichia coli K12 predicted amino-acid transporter subunit NP_417736.2 3419347 D 83333 CDS NP_417737.1 16131159 947763 3420458..3421216 1 NC_000913.2 putative ATP-binding component of a transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; predicted amino-acid transporter subunit 3421216 yhdZ 947763 yhdZ Escherichia coli K12 predicted amino-acid transporter subunit NP_417737.1 3420458 D 83333 CDS NP_417738.4 90111568 947775 3427258..3427812 1 NC_000913.2 putative transferase; conserved protein 3427812 yrdA 947775 yrdA Escherichia coli K12 conserved protein NP_417738.4 3427258 D 83333 CDS NP_417739.1 16131161 947774 complement(3427788..3428045) 1 NC_000913.2 conserved protein 3428045 yrdB 947774 yrdB Escherichia coli K12 conserved protein NP_417739.1 3427788 R 83333 CDS NP_417740.1 16131162 947776 complement(3428042..3428860) 1 NC_000913.2 dehydroshikimate reductase; GO_process: chorismate biosynthetic process [goid 0009423]; dehydroshikimate reductase, NAD(P)-binding 3428860 aroE 947776 aroE Escherichia coli K12 dehydroshikimate reductase, NAD(P)-binding NP_417740.1 3428042 R 83333 CDS NP_417741.1 16131163 947783 complement(3428865..3429437) 1 NC_000913.2 predicted ribosome maturation factor 3429437 rimN 947783 rimN Escherichia coli K12 predicted ribosome maturation factor NP_417741.1 3428865 R 83333 CDS YP_026210.1 49176335 947782 complement(3429442..3429984) 1 NC_000913.2 putative DNA topoisomerase; predicted DNA topoisomerase 3429984 yrdD 947782 yrdD Escherichia coli K12 predicted DNA topoisomerase YP_026210.1 3429442 R 83333 CDS NP_417743.1 16131165 947781 complement(3430013..3430486) 1 NC_000913.2 conserved protein 3430486 smg 947781 smg Escherichia coli K12 conserved protein NP_417743.1 3430013 R 83333 CDS YP_026211.1 49176336 2847708 complement(3430458..3431582) 1 NC_000913.2 conserved protein 3431582 smf 2847708 smf Escherichia coli K12 conserved protein YP_026211.1 3430458 R 83333 CDS NP_417745.1 16131166 947780 3431712..3432221 1 NC_000913.2 GO_process: protein modification [goid 0006464]; peptide deformylase 3432221 def 947780 def Escherichia coli K12 peptide deformylase NP_417745.1 3431712 D 83333 CDS NP_417746.1 16131167 947779 3432236..3433183 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase 3433183 fmt 947779 fmt Escherichia coli K12 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase NP_417746.1 3432236 D 83333 CDS NP_417747.1 16131168 947789 3433229..3434518 1 NC_000913.2 16S rRNA m5C967 methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent 3434518 rsmB 947789 rsmB Escherichia coli K12 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent NP_417747.1 3433229 D 83333 CDS NP_417748.1 16131169 947788 3434540..3435916 1 NC_000913.2 transport of potassium; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; NAD-binding component of TrK potassium transporter 3435916 trkA 947788 trkA Escherichia coli K12 NAD-binding component of TrK potassium transporter NP_417748.1 3434540 D 83333 CDS NP_417749.1 16131170 947787 3436046..3436456 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; mechanosensitive channel 3436456 mscL 947787 mscL Escherichia coli K12 mechanosensitive channel NP_417749.1 3436046 D 83333 CDS YP_588467.1 94541124 1450289 complement(3436453..3436671) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; conserved protein 3436671 yhdL 1450289 yhdL Escherichia coli K12 conserved protein YP_588467.1 3436453 R 83333 CDS NP_417751.1 16131171 947786 complement(3436727..3437152) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional activator in response to Zn(II) 3437152 zntR 947786 zntR Escherichia coli K12 DNA-binding transcriptional activator in response to Zn(II) NP_417751.1 3436727 R 83333 CDS NP_417752.1 16131172 947785 complement(3437163..3437531) 1 NC_000913.2 conserved protein 3437531 yhdN 947785 yhdN Escherichia coli K12 conserved protein NP_417752.1 3437163 R 83333 CDS NP_417753.1 16131173 947784 complement(3437638..3438021) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L17 3438021 rplQ 947784 rplQ Escherichia coli K12 50S ribosomal subunit protein L17 NP_417753.1 3437638 R 83333 CDS NP_417754.1 16131174 947794 complement(3438062..3439051) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, alpha subunit 3439051 rpoA 947794 rpoA Escherichia coli K12 RNA polymerase, alpha subunit NP_417754.1 3438062 R 83333 CDS NP_417755.1 16131175 947793 complement(3439077..3439697) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S4 3439697 rpsD 947793 rpsD Escherichia coli K12 30S ribosomal subunit protein S4 NP_417755.1 3439077 R 83333 CDS NP_417756.1 16131176 947792 complement(3439731..3440120) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S11 3440120 rpsK 947792 rpsK Escherichia coli K12 30S ribosomal subunit protein S11 NP_417756.1 3439731 R 83333 CDS NP_417757.1 16131177 947791 complement(3440137..3440493) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S13 3440493 rpsM 947791 rpsM Escherichia coli K12 30S ribosomal subunit protein S13 NP_417757.1 3440137 R 83333 CDS NP_417758.1 16131178 947805 complement(3440640..3440756) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L36 3440756 rpmJ 947805 rpmJ Escherichia coli K12 50S ribosomal subunit protein L36 NP_417758.1 3440640 R 83333 CDS NP_417759.1 16131179 947799 complement(3440788..3442119) 1 NC_000913.2 putative ATPase subunit of translocase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; preprotein translocase membrane subunit 3442119 secY 947799 secY Escherichia coli K12 preprotein translocase membrane subunit NP_417759.1 3440788 R 83333 CDS NP_417760.1 16131180 947798 complement(3442127..3442561) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L15 3442561 rplO 947798 rplO Escherichia coli K12 50S ribosomal subunit protein L15 NP_417760.1 3442127 R 83333 CDS NP_417761.1 16131181 947797 complement(3442565..3442744) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L30 3442744 rpmD 947797 rpmD Escherichia coli K12 50S ribosomal subunit protein L30 NP_417761.1 3442565 R 83333 CDS NP_417762.1 16131182 947795 complement(3442748..3443251) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S5 3443251 rpsE 947795 rpsE Escherichia coli K12 30S ribosomal subunit protein S5 NP_417762.1 3442748 R 83333 CDS NP_417763.1 16131183 947804 complement(3443266..3443619) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L18 3443619 rplR 947804 rplR Escherichia coli K12 50S ribosomal subunit protein L18 NP_417763.1 3443266 R 83333 CDS NP_417764.1 16131184 947803 complement(3443629..3444162) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L6 3444162 rplF 947803 rplF Escherichia coli K12 50S ribosomal subunit protein L6 NP_417764.1 3443629 R 83333 CDS NP_417765.1 16131185 947802 complement(3444175..3444567) 1 NC_000913.2 30S ribosomal subunit protein S8, and regulator; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; GO_process: translational attenuation [goid 0009386]; 30S ribosomal subunit protein S8 3444567 rpsH 947802 rpsH Escherichia coli K12 30S ribosomal subunit protein S8 NP_417765.1 3444175 R 83333 CDS NP_417766.1 16131186 947801 complement(3444601..3444906) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S14 3444906 rpsN 947801 rpsN Escherichia coli K12 30S ribosomal subunit protein S14 NP_417766.1 3444601 R 83333 CDS NP_417767.1 16131187 947800 complement(3444921..3445460) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L5 3445460 rplE 947800 rplE Escherichia coli K12 50S ribosomal subunit protein L5 NP_417767.1 3444921 R 83333 CDS NP_417768.1 16131188 947810 complement(3445475..3445789) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L24 3445789 rplX 947810 rplX Escherichia coli K12 50S ribosomal subunit protein L24 NP_417768.1 3445475 R 83333 CDS NP_417769.1 16131189 947809 complement(3445800..3446171) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L14 3446171 rplN 947809 rplN Escherichia coli K12 50S ribosomal subunit protein L14 NP_417769.1 3445800 R 83333 CDS NP_417770.1 16131190 947808 complement(3446336..3446590) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S17 3446590 rpsQ 947808 rpsQ Escherichia coli K12 30S ribosomal subunit protein S17 NP_417770.1 3446336 R 83333 CDS NP_417771.1 16131191 947807 complement(3446590..3446781) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L29 3446781 rpmC 947807 rpmC Escherichia coli K12 50S ribosomal subunit protein L29 NP_417771.1 3446590 R 83333 CDS NP_417772.1 16131192 947806 complement(3446781..3447191) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L16 3447191 rplP 947806 rplP Escherichia coli K12 50S ribosomal subunit protein L16 NP_417772.1 3446781 R 83333 CDS NP_417773.1 16131193 947814 complement(3447204..3447905) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S3 3447905 rpsC 947814 rpsC Escherichia coli K12 30S ribosomal subunit protein S3 NP_417773.1 3447204 R 83333 CDS NP_417774.1 16131194 947813 complement(3447923..3448255) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L22 3448255 rplV 947813 rplV Escherichia coli K12 50S ribosomal subunit protein L22 NP_417774.1 3447923 R 83333 CDS NP_417775.1 16131195 947811 complement(3448270..3448548) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S19 3448548 rpsS 947811 rpsS Escherichia coli K12 30S ribosomal subunit protein S19 NP_417775.1 3448270 R 83333 CDS NP_417776.1 16131196 947820 complement(3448565..3449386) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L2 3449386 rplB 947820 rplB Escherichia coli K12 50S ribosomal subunit protein L2 NP_417776.1 3448565 R 83333 CDS NP_417777.1 16131197 947819 complement(3449404..3449706) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L23 3449706 rplW 947819 rplW Escherichia coli K12 50S ribosomal subunit protein L23 NP_417777.1 3449404 R 83333 CDS NP_417778.1 16131198 947818 complement(3449703..3450308) 1 NC_000913.2 50S ribosomal subunit protein L4, regulates expression of S10 operon; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; GO_process: translational attenuation [goid 0009386]; 50S ribosomal subunit protein L4 3450308 rplD 947818 rplD Escherichia coli K12 50S ribosomal subunit protein L4 NP_417778.1 3449703 R 83333 CDS NP_417779.1 16131199 947817 complement(3450319..3450948) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L3 3450948 rplC 947817 rplC Escherichia coli K12 50S ribosomal subunit protein L3 NP_417779.1 3450319 R 83333 CDS NP_417780.1 16131200 947816 complement(3450981..3451292) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S10 3451292 rpsJ 947816 rpsJ Escherichia coli K12 30S ribosomal subunit protein S10 NP_417780.1 3450981 R 83333 CDS NP_417781.1 16131201 947826 complement(3451530..3451949) 1 NC_000913.2 calcium-binding protein required for initiation of chromosome replication; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; part of gsp divergon involved in type II protein secretion 3451949 gspB 947826 gspB Escherichia coli K12 part of gsp divergon involved in type II protein secretion NP_417781.1 3451530 R 83333 CDS NP_417782.1 16131202 947825 complement(3451951..3453420) 1 NC_000913.2 putative export protein A for general secretion pathway (GSP); general secretory pathway component, cryptic 3453420 gspA 947825 gspA Escherichia coli K12 general secretory pathway component, cryptic NP_417782.1 3451951 R 83333 CDS NP_417783.1 16131203 947824 3453600..3454415 1 NC_000913.2 general secretory pathway component, cryptic 3454415 gspC 947824 gspC Escherichia coli K12 general secretory pathway component, cryptic NP_417783.1 3453600 D 83333 CDS NP_417784.4 90111569 947822 3454399..3456351 1 NC_000913.2 general secretory pathway component, cryptic 3456351 gspD 947822 gspD Escherichia coli K12 general secretory pathway component, cryptic NP_417784.4 3454399 D 83333 CDS NP_417785.1 16131205 947823 3456361..3457842 1 NC_000913.2 general secretory pathway component, cryptic 3457842 gspE 947823 gspE Escherichia coli K12 general secretory pathway component, cryptic NP_417785.1 3456361 D 83333 CDS NP_417786.1 16131206 947829 3457839..3459035 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; general secretory pathway component, cryptic 3459035 gspF 947829 gspF Escherichia coli K12 general secretory pathway component, cryptic NP_417786.1 3457839 D 83333 CDS NP_417787.1 16131207 947827 3459045..3459482 1 NC_000913.2 pseudopilin, cryptic, general secretion pathway 3459482 gspG 947827 gspG Escherichia coli K12 pseudopilin, cryptic, general secretion pathway NP_417787.1 3459045 D 83333 CDS NP_417788.1 16131208 947834 3459490..3459999 1 NC_000913.2 predicted general secretory pathway component, cryptic 3459999 gspH 947834 gspH Escherichia coli K12 predicted general secretory pathway component, cryptic NP_417788.1 3459490 D 83333 CDS NP_417789.4 90111570 947833 3459996..3460373 1 NC_000913.2 general secretory pathway component, cryptic 3460373 gspI 947833 gspI Escherichia coli K12 general secretory pathway component, cryptic NP_417789.4 3459996 D 83333 CDS NP_417790.1 16131210 947832 3460366..3460953 1 NC_000913.2 predicted general secretory pathway component, cryptic 3460953 gspJ 947832 gspJ Escherichia coli K12 predicted general secretory pathway component, cryptic NP_417790.1 3460366 D 83333 CDS NP_417791.1 16131211 947831 3460946..3461929 1 NC_000913.2 general secretory pathway component, cryptic 3461929 gspK 947831 gspK Escherichia coli K12 general secretory pathway component, cryptic NP_417791.1 3460946 D 83333 CDS NP_417792.2 90111571 947842 3461944..3463107 1 NC_000913.2 general secretory pathway component, cryptic 3463107 gspL 947842 gspL Escherichia coli K12 general secretory pathway component, cryptic NP_417792.2 3461944 D 83333 CDS NP_417793.2 90111572 947841 3463104..3463565 1 NC_000913.2 general secretory pathway component, cryptic 3463565 gspM 947841 gspM Escherichia coli K12 general secretory pathway component, cryptic NP_417793.2 3463104 D 83333 CDS NP_417794.1 16131214 947840 3463565..3464242 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; bifunctional prepilin leader peptidase/ methylase 3464242 gspO 947840 gspO Escherichia coli K12 bifunctional prepilin leader peptidase/ methylase NP_417794.1 3463565 D 83333 CDS NP_417795.1 16131215 947839 complement(3464271..3464747) 1 NC_000913.2 bacterioferrin, an iron storage homoprotein; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; bacterioferritin, iron storage and detoxification protein 3464747 bfr 947839 bfr Escherichia coli K12 bacterioferritin, iron storage and detoxification protein NP_417795.1 3464271 R 83333 CDS NP_417796.1 16131216 947836 complement(3464819..3465013) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; bacterioferritin-associated ferredoxin 3465013 bfd 947836 bfd Escherichia coli K12 bacterioferritin-associated ferredoxin NP_417796.1 3464819 R 83333 CDS NP_417797.1 16131217 947837 complement(3465182..3467875) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: macromolecule catabolic process [goid 0009057]; periplasmic endochitinase 3467875 chiA 947837 chiA Escherichia coli K12 periplasmic endochitinase NP_417797.1 3465182 R 83333 CDS NP_417798.1 16131218 947838 complement(3468167..3469351) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; GO_process: response to osmotic stress [goid 0006970]; protein chain elongation factor EF-Tu (duplicate of tufB) 3469351 tufA 947838 tufA Escherichia coli K12 protein chain elongation factor EF-Tu (duplicate of tufB) NP_417798.1 3468167 R 83333 CDS NP_417799.1 16131219 947847 complement(3469422..3471536) 1 NC_000913.2 GTP-binding protein chain elongation factor EF-G; GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; protein chain elongation factor EF-G, GTP-binding 3471536 fusA 947847 fusA Escherichia coli K12 protein chain elongation factor EF-G, GTP-binding NP_417799.1 3469422 R 83333 CDS NP_417800.1 16131220 947846 complement(3471564..3472103) 1 NC_000913.2 30S ribosomal subunit protein S7, initiates assembly; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S7 3472103 rpsG 947846 rpsG Escherichia coli K12 30S ribosomal subunit protein S7 NP_417800.1 3471564 R 83333 CDS NP_417801.1 16131221 947845 complement(3472200..3472574) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S12 3472574 rpsL 947845 rpsL Escherichia coli K12 30S ribosomal subunit protein S12 NP_417801.1 3472200 R 83333 CDS NP_417802.1 16131222 947844 complement(3472700..3472987) 1 NC_000913.2 predicted intracellular sulfur oxidation protein 3472987 yheL 947844 yheL Escherichia coli K12 predicted intracellular sulfur oxidation protein NP_417802.1 3472700 R 83333 CDS NP_417803.1 16131223 947853 complement(3472995..3473354) 1 NC_000913.2 predicted intraceullular sulfur oxidation protein 3473354 yheM 947853 yheM Escherichia coli K12 predicted intraceullular sulfur oxidation protein NP_417803.1 3472995 R 83333 CDS NP_417804.1 16131224 947852 complement(3473354..3473740) 1 NC_000913.2 predicted intracellular sulfur oxidation protein 3473740 yheN 947852 yheN Escherichia coli K12 predicted intracellular sulfur oxidation protein NP_417804.1 3473354 R 83333 CDS NP_417805.4 90111573 947851 complement(3473740..3474462) 1 NC_000913.2 predicted DNA-binding transcriptional regulator 3474462 yheO 947851 yheO Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417805.4 3473740 R 83333 CDS NP_417806.1 16131226 947850 complement(3474629..3475441) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 3475441 fkpA 947850 fkpA Escherichia coli K12 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) NP_417806.1 3474629 R 83333 CDS NP_417807.1 16131227 947849 3475662..3475880 1 NC_000913.2 host factor for lysis of phiX174 infection; conserved protein 3475880 slyX 947849 slyX Escherichia coli K12 conserved protein NP_417807.1 3475662 D 83333 CDS NP_417808.1 16131228 947859 complement(3475929..3476519) 1 NC_000913.2 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); GO_process: protein folding [goid 0006457]; FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) 3476519 slyD 947859 slyD Escherichia coli K12 FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) NP_417808.1 3475929 R 83333 CDS YP_588468.1 94541125 1450290 complement(3476614..3476814) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 3476814 yheV 1450290 yheV Escherichia coli K12 predicted protein YP_588468.1 3476614 R 83333 CDS NP_417809.1 16131229 947858 complement(3476824..3478629) 1 NC_000913.2 K+ efflux; NEM-activable K+/H+ antiporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: potassium:hydrogen antiporter activity [goid 0015386]; potassium:proton antiporter 3478629 kefB 947858 kefB Escherichia coli K12 potassium:proton antiporter NP_417809.1 3476824 R 83333 CDS NP_417810.1 16131230 947857 complement(3478629..3479183) 1 NC_000913.2 putative NAD(P)H oxidoreductase; component of potassium effux complex with KefB 3479183 kefG 947857 kefG Escherichia coli K12 component of potassium effux complex with KefB NP_417810.1 3478629 R 83333 CDS NP_417811.1 16131231 947856 3479311..3481224 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 3481224 yheS 947856 yheS Escherichia coli K12 fused predicted transporter subunits of ABC superfamily: ATP-binding components NP_417811.1 3479311 D 83333 CDS NP_417812.1 16131232 947855 3481224..3482246 1 NC_000913.2 predicted hydrolase 3482246 yheT 947855 yheT Escherichia coli K12 predicted hydrolase NP_417812.1 3481224 D 83333 CDS NP_417813.1 16131233 947863 3482240..3482458 1 NC_000913.2 conserved protein 3482458 yheU 947863 yheU Escherichia coli K12 conserved protein NP_417813.1 3482240 D 83333 CDS NP_417814.1 16131234 947862 3482512..3483381 1 NC_000913.2 probable phosphoribulokinase; GO_process: glucose metabolic process [goid 0006006]; predicted phosphoribulokinase 3483381 prkB 947862 prkB Escherichia coli K12 predicted phosphoribulokinase NP_417814.1 3482512 D 83333 CDS NP_417815.1 16131235 947860 complement(3483436..3483840) 1 NC_000913.2 conserved protein 3483840 yhfA 947860 yhfA Escherichia coli K12 conserved protein NP_417815.1 3483436 R 83333 CDS NP_417816.1 16131236 947867 3484142..3484774 1 NC_000913.2 cyclic AMP receptor protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3484774 crp 947867 crp Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417816.1 3484142 D 83333 CDS NP_417817.2 90111574 947866 3484813..3486915 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: metabolic process [goid 0008152]; conserved inner membrane protein 3486915 yhfK 947866 yhfK Escherichia coli K12 conserved inner membrane protein NP_417817.2 3484813 D 83333 CDS NP_417818.1 16131238 947864 complement(3486982..3488202) 1 NC_000913.2 acetylornithine delta-aminotransferase; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase 3488202 argD 947864 argD Escherichia coli K12 bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase NP_417818.1 3486982 R 83333 CDS NP_417819.1 16131239 947873 complement(3488288..3488851) 1 NC_000913.2 p-aminobenzoate synthetase, component II; GO_process: folic acid biosynthetic process [goid 0046656]; aminodeoxychorismate synthase, subunit II 3488851 pabA 947873 pabA Escherichia coli K12 aminodeoxychorismate synthase, subunit II NP_417819.1 3488288 R 83333 CDS NP_417820.1 16131240 947872 complement(3488883..3489485) 1 NC_000913.2 induced in stationary phase, recognized by rpoS, affects cell division; stationary-phase protein, cell division 3489485 fic 947872 fic Escherichia coli K12 stationary-phase protein, cell division NP_417820.1 3488883 R 83333 CDS NP_417821.1 16131241 947871 complement(3489475..3489642) 1 NC_000913.2 predicted protein 3489642 yhfG 947871 yhfG Escherichia coli K12 predicted protein NP_417821.1 3489475 R 83333 CDS NP_417822.1 16131242 947870 complement(3489747..3490319) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase A (rotamase A) 3490319 ppiA 947870 ppiA Escherichia coli K12 peptidyl-prolyl cis-trans isomerase A (rotamase A) NP_417822.1 3489747 R 83333 CDS NP_417823.1 16131243 947869 3490590..3491771 1 NC_000913.2 putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3491771 tsgA 947869 tsgA Escherichia coli K12 predicted transporter NP_417823.1 3490590 D 83333 CDS NP_417824.1 16131244 947868 3492033..3494576 1 NC_000913.2 nitrite reductase (NAD(P)H) subunit; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; nitrite reductase, large subunit, NAD(P)H-binding 3494576 nirB 947868 nirB Escherichia coli K12 nitrite reductase, large subunit, NAD(P)H-binding NP_417824.1 3492033 D 83333 CDS NP_417825.1 16131245 947881 3494573..3494899 1 NC_000913.2 nitrite reductase (NAD(P)H) subunit; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; nitrite reductase, NAD(P)H-binding, small subunit 3494899 nirD 947881 nirD Escherichia coli K12 nitrite reductase, NAD(P)H-binding, small subunit NP_417825.1 3494573 D 83333 CDS YP_026212.2 90111575 2847757 3495025..3495831 1 NC_000913.2 nitrite reductase activity; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: nitrogen compound metabolic process [goid 0006807]; nitrite transporter 3495831 nirC 2847757 nirC Escherichia coli K12 nitrite transporter YP_026212.2 3495025 D 83333 CDS NP_417827.1 16131246 947880 3495850..3497223 1 NC_000913.2 uroporphyrinogen III methylase; sirohaeme biosynthesis; fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase 3497223 cysG 947880 cysG Escherichia coli K12 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase NP_417827.1 3495850 D 83333 CDS NP_417828.1 16131247 947879 3497470..3497637 1 NC_000913.2 conserved secreted peptide 3497637 yhfL 947879 yhfL Escherichia coli K12 conserved secreted peptide NP_417828.1 3497470 D 83333 CDS NP_417829.2 90111576 947878 3497932..3499269 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted fructoselysine transporter 3499269 frlA 947878 frlA Escherichia coli K12 predicted fructoselysine transporter NP_417829.2 3497932 D 83333 CDS NP_417830.4 162135909 947875 3499290..3500312 1 NC_000913.2 putative transport protein; fructoselysine-6-P-deglycase 3500312 frlB 947875 frlB Escherichia coli K12 fructoselysine-6-P-deglycase NP_417830.4 3499290 D 83333 CDS YP_026213.1 49176341 2847758 3500362..3501192 1 NC_000913.2 putative fructoselysine or fructoselysine 6-P isomerase; predicted isomerase 3501192 frlC 2847758 frlC Escherichia coli K12 predicted isomerase YP_026213.1 3500362 D 83333 CDS NP_417833.1 16131252 947886 3501189..3501974 1 NC_000913.2 putative kinase; fructoselysine 6-kinase 3501974 frlD 947886 frlD Escherichia coli K12 fructoselysine 6-kinase NP_417833.1 3501189 D 83333 CDS NP_417834.6 162135910 947885 3502074..3502805 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3502805 frlR 947885 frlR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417834.6 3502074 D 83333 CDS NP_417835.1 16131254 947884 complement(3502957..3504042) 1 NC_000913.2 conserved protein 3504042 yhfS 947884 yhfS Escherichia coli K12 conserved protein NP_417835.1 3502957 R 83333 CDS NP_417836.1 16131255 947883 complement(3504054..3505358) 1 NC_000913.2 putative transport system permease protein; predicted inner membrane protein 3505358 yhfT 947883 yhfT Escherichia coli K12 predicted inner membrane protein NP_417836.1 3504054 R 83333 CDS NP_417837.2 90111579 947892 complement(3505370..3505723) 1 NC_000913.2 predicted protein 3505723 yhfU 947892 yhfU Escherichia coli K12 predicted protein NP_417837.2 3505370 R 83333 CDS NP_417838.1 16131257 947891 complement(3505734..3506612) 1 NC_000913.2 putative hydrolase; predicted hydrolase 3506612 php 947891 php Escherichia coli K12 predicted hydrolase NP_417838.1 3505734 R 83333 CDS NP_417839.1 16131258 947890 complement(3506609..3507835) 1 NC_000913.2 putative mutase; predicted mutase 3507835 yhfW 947890 yhfW Escherichia coli K12 predicted mutase NP_417839.1 3506609 R 83333 CDS NP_417840.1 16131259 947889 complement(3507835..3508998) 1 NC_000913.2 predicted amino acid racemase 3508998 yhfX 947889 yhfX Escherichia coli K12 predicted amino acid racemase NP_417840.1 3507835 R 83333 CDS NP_417841.2 90111580 947888 complement(3509082..3509444) 1 NC_000913.2 conserved protein 3509444 yhfY 947888 yhfY Escherichia coli K12 conserved protein NP_417841.2 3509082 R 83333 CDS YP_026214.1 49176343 947897 complement(3509461..3510366) 1 NC_000913.2 conserved protein 3510366 yhfZ 947897 yhfZ Escherichia coli K12 conserved protein YP_026214.1 3509461 R 83333 CDS NP_417843.1 16131262 947894 complement(3510656..3511660) 1 NC_000913.2 tryptophan tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; tryptophanyl-tRNA synthetase 3511660 trpS 947894 trpS Escherichia coli K12 tryptophanyl-tRNA synthetase NP_417843.1 3510656 R 83333 CDS NP_417844.1 16131263 947895 complement(3511653..3512411) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; phosphoglycolate phosphatase 3512411 gph 947895 gph Escherichia coli K12 phosphoglycolate phosphatase NP_417844.1 3511653 R 83333 CDS NP_417845.1 16131264 947896 complement(3512404..3513081) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; D-ribulose-5-phosphate 3-epimerase 3513081 rpe 947896 rpe Escherichia coli K12 D-ribulose-5-phosphate 3-epimerase NP_417845.1 3512404 R 83333 CDS NP_417846.1 16131265 947893 complement(3513099..3513935) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; DNA adenine methylase 3513935 dam 947893 dam Escherichia coli K12 DNA adenine methylase NP_417846.1 3513099 R 83333 CDS NP_417847.1 16131266 947930 complement(3514042..3515328) 1 NC_000913.2 putative membrane protein; interferes with cell division; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted protein 3515328 damX 947930 damX Escherichia coli K12 predicted protein NP_417847.1 3514042 R 83333 CDS NP_417848.1 16131267 947927 complement(3515420..3516508) 1 NC_000913.2 GO_process: chorismate biosynthetic process [goid 0009423]; 3-dehydroquinate synthase 3516508 aroB 947927 aroB Escherichia coli K12 3-dehydroquinate synthase NP_417848.1 3515420 R 83333 CDS YP_026215.2 90111581 2847759 complement(3516565..3517086) 1 NC_000913.2 GO_process: chorismate biosynthetic process [goid 0009423]; shikimate kinase I 3517086 aroK 2847759 aroK Escherichia coli K12 shikimate kinase I YP_026215.2 3516565 R 83333 CDS NP_417850.1 16131268 947901 complement(3517487..3518725) 1 NC_000913.2 putative transport portein; predicted fimbrial transporter 3518725 hofQ 947901 hofQ Escherichia coli K12 predicted fimbrial transporter NP_417850.1 3517487 R 83333 CDS NP_417851.4 90111582 947900 complement(3518637..3519041) 1 NC_000913.2 predicted protein 3519041 hofP 947900 hofP Escherichia coli K12 predicted protein NP_417851.4 3518637 R 83333 CDS NP_417852.1 16131270 947899 complement(3519031..3519471) 1 NC_000913.2 conserved membrane protein 3519471 hofO 947899 hofO Escherichia coli K12 conserved membrane protein NP_417852.1 3519031 R 83333 CDS NP_417853.1 16131271 947898 complement(3519455..3519994) 1 NC_000913.2 predicted fimbrial assembly protein 3519994 hofN 947898 hofN Escherichia coli K12 predicted fimbrial assembly protein NP_417853.1 3519455 R 83333 CDS NP_417854.4 90111583 947908 complement(3519994..3520773) 1 NC_000913.2 predicted pilus assembly protein 3520773 hofM 947908 hofM Escherichia coli K12 predicted pilus assembly protein NP_417854.4 3519994 R 83333 CDS NP_417855.4 162135911 947907 3520893..3523445 1 NC_000913.2 peptidoglycan synthetase; penicillin-binding protein 1A; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase 3523445 mrcA 947907 mrcA Escherichia coli K12 fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase NP_417855.4 3520893 D 83333 CDS NP_417856.1 16131274 947906 complement(3523611..3524171) 1 NC_000913.2 ADP-ribose diphosphatase 3524171 nudE 947906 nudE Escherichia coli K12 ADP-ribose diphosphatase NP_417856.1 3523611 R 83333 CDS NP_417857.1 16131275 947905 3524491..3526626 1 NC_000913.2 putative dehydrogenase; predicted inner membrane protein 3526626 yrfF 947905 yrfF Escherichia coli K12 predicted inner membrane protein NP_417857.1 3524491 D 83333 CDS NP_417858.4 90111585 947904 3526691..3527359 1 NC_000913.2 putative phosphatase; predicted hydrolase 3527359 yrfG 947904 yrfG Escherichia coli K12 predicted hydrolase NP_417858.4 3526691 D 83333 CDS NP_417859.1 16131277 947912 3527370..3527771 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: response to temperature stimulus [goid 0009266]; ribosome-associated heat shock protein Hsp15 3527771 hslR 947912 hslR Escherichia coli K12 ribosome-associated heat shock protein Hsp15 NP_417859.1 3527370 D 83333 CDS NP_417860.2 90111586 947178 3527796..3528674 1 NC_000913.2 GO_process: protein folding [goid 0006457]; heat shock protein Hsp33 3528674 hslO 947178 hslO Escherichia coli K12 heat shock protein Hsp33 NP_417860.2 3527796 D 83333 CDS NP_417861.1 16131279 947651 complement(3528737..3530461) 1 NC_000913.2 putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3530461 yhgE 947651 yhgE Escherichia coli K12 predicted inner membrane protein NP_417861.1 3528737 R 83333 CDS NP_417862.1 16131280 945667 3530840..3532462 1 NC_000913.2 GO_process: gluconeogenesis [goid 0006094]; phosphoenolpyruvate carboxykinase 3532462 pck 945667 pck Escherichia coli K12 phosphoenolpyruvate carboxykinase NP_417862.1 3530840 D 83333 CDS NP_417863.1 16131281 947272 complement(3532538..3533890) 1 NC_000913.2 protein histidine kinase/phosphatase sensor for OmpR, modulates expression of ompF and ompC; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with OmpR 3533890 envZ 947272 envZ Escherichia coli K12 sensory histidine kinase in two-component regulatory system with OmpR NP_417863.1 3532538 R 83333 CDS NP_417864.1 16131282 947913 complement(3533887..3534606) 1 NC_000913.2 response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with EnvZ 3534606 ompR 947913 ompR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with EnvZ NP_417864.1 3533887 R 83333 CDS YP_026216.2 90111587 2847706 3534834..3535310 1 NC_000913.2 transcription elongation factor and transcript cleavage; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; transcription elongation factor 3535310 greB 2847706 greB Escherichia coli K12 transcription elongation factor YP_026216.2 3534834 D 83333 CDS NP_417866.4 90111588 947911 3535407..3537728 1 NC_000913.2 predicted transcriptional accessory protein 3537728 yhgF 947911 yhgF Escherichia coli K12 predicted transcriptional accessory protein NP_417866.4 3535407 D 83333 CDS NP_417867.1 16131284 947909 3538185..3538412 1 NC_000913.2 ferrous iron transport protein A; GO_process: iron ion transport [goid 0006826]; ferrous iron transporter, protein A 3538412 feoA 947909 feoA Escherichia coli K12 ferrous iron transporter, protein A NP_417867.1 3538185 D 83333 CDS NP_417868.1 16131285 947919 3538429..3540750 1 NC_000913.2 ferrous iron transport protein B; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; fused ferrous iron transporter, protein B: GTP-binding protein/membrane protein 3540750 feoB 947919 feoB Escherichia coli K12 fused ferrous iron transporter, protein B: GTP-binding protein/membrane protein NP_417868.1 3538429 D 83333 CDS NP_417869.1 16131286 947918 3540750..3540986 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 3540986 feoC 947918 feoC Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417869.1 3540750 D 83333 CDS NP_417870.1 16131287 947917 3541189..3542067 1 NC_000913.2 predicted transposase 3542067 yhgA 947917 yhgA Escherichia coli K12 predicted transposase NP_417870.1 3541189 D 83333 CDS NP_417871.1 16131288 947916 complement(3542096..3542866) 1 NC_000913.2 biotin biosynthesis; reaction prior to pimeloyl CoA; GO_process: biotin biosynthetic process [goid 0009102]; carboxylesterase of pimeloyl-CoA synthesis 3542866 bioH 947916 bioH Escherichia coli K12 carboxylesterase of pimeloyl-CoA synthesis NP_417871.1 3542096 R 83333 CDS NP_417872.2 90111589 947915 3542904..3543587 1 NC_000913.2 gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system 3543587 gntX 947915 gntX Escherichia coli K12 gluconate periplasmic binding protein with phosphoribosyltransferase domain, GNT I system NP_417872.2 3542904 D 83333 CDS NP_417873.1 16131290 947925 3543646..3544221 1 NC_000913.2 predicted gluconate transport associated protein 3544221 gntY 947925 gntY Escherichia coli K12 predicted gluconate transport associated protein NP_417873.1 3543646 D 83333 CDS YP_026217.1 49176350 947924 3544581..3545897 1 NC_000913.2 high-affinity transport of gluconate / gluconate permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; gluconate transporter, high-affinity GNT I system 3545897 gntT 947924 gntT Escherichia coli K12 gluconate transporter, high-affinity GNT I system YP_026217.1 3544581 D 83333 CDS NP_417875.1 16131292 947923 complement(3546008..3548092) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; 4-alpha-glucanotransferase (amylomaltase) 3548092 malQ 947923 malQ Escherichia coli K12 4-alpha-glucanotransferase (amylomaltase) NP_417875.1 3546008 R 83333 CDS YP_026218.1 49176351 947922 complement(3548102..3550495) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; maltodextrin phosphorylase 3550495 malP 947922 malP Escherichia coli K12 maltodextrin phosphorylase YP_026218.1 3548102 R 83333 CDS NP_417877.1 16131294 947921 3551107..3553812 1 NC_000913.2 positive regulator of mal regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein 3553812 malT 947921 malT Escherichia coli K12 fused conserved protein: DNA-binding transcriptional activator/maltotriose-ATP-binding protein NP_417877.1 3551107 D 83333 CDS YP_026219.1 49176352 2847707 complement(3553855..3554871) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA metabolic process [goid 0016070]; RNA 3'-terminal phosphate cyclase 3554871 rtcA 2847707 rtcA Escherichia coli K12 RNA 3'-terminal phosphate cyclase YP_026219.1 3553855 R 83333 CDS NP_417879.1 16131295 947929 complement(3554875..3556101) 1 NC_000913.2 conserved protein 3556101 rtcB 947929 rtcB Escherichia coli K12 conserved protein NP_417879.1 3554875 R 83333 CDS NP_417880.1 16131296 947928 3556290..3557888 1 NC_000913.2 sigma54-dependent regulator of rtcBA expression; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: regulation of transcription, DNA-dependent [goid 0006355]; sigma 54-dependent transcriptional regulator of rtcBA expression 3557888 rtcR 947928 rtcR Escherichia coli K12 sigma 54-dependent transcriptional regulator of rtcBA expression NP_417880.1 3556290 D 83333 CDS NP_417881.1 16131297 947926 complement(3557870..3558628) 1 NC_000913.2 repressor of the glp operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3558628 glpR 947926 glpR Escherichia coli K12 DNA-binding transcriptional repressor NP_417881.1 3557870 R 83333 CDS YP_026220.1 49176353 947936 complement(3558645..3559475) 1 NC_000913.2 protein of glp regulon; predicted intramembrane serine protease 3559475 glpG 947936 glpG Escherichia coli K12 predicted intramembrane serine protease YP_026220.1 3558645 R 83333 CDS NP_417883.1 16131299 947935 complement(3559520..3559846) 1 NC_000913.2 rhodanese (thiosulfate:cyanide sulfertransferase); GO_process: anaerobic respiration [goid 0009061]; thiosulfate:cyanide sulfurtransferase (rhodanese) 3559846 glpE 947935 glpE Escherichia coli K12 thiosulfate:cyanide sulfurtransferase (rhodanese) NP_417883.1 3559520 R 83333 CDS NP_417884.1 16131300 947934 3560036..3561541 1 NC_000913.2 sn-glycerol-3-phosphate dehydrogenase (aerobic); GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: glycerol metabolic process [goid 0006071]; sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding 3561541 glpD 947934 glpD Escherichia coli K12 sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding NP_417884.1 3560036 D 83333 CDS b3427 947933 complement(3561747..3562028) 1 NC_000913.2 predicted protein; 3562028 yzgL 947933 yzgL Escherichia coli K12 3561747 R 83333 CDS NP_417886.1 16131302 947931 complement(3562157..3564604) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glycogen phosphorylase 3564604 glgP 947931 glgP Escherichia coli K12 glycogen phosphorylase NP_417886.1 3562157 R 83333 CDS NP_417887.1 16131303 947932 complement(3564623..3566056) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glycogen synthase 3566056 glgA 947932 glgA Escherichia coli K12 glycogen synthase NP_417887.1 3564623 R 83333 CDS NP_417888.1 16131304 947942 complement(3566056..3567351) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glucose-1-phosphate adenylyltransferase 3567351 glgC 947942 glgC Escherichia coli K12 glucose-1-phosphate adenylyltransferase NP_417888.1 3566056 R 83333 CDS NP_417889.1 16131305 947941 complement(3567369..3569342) 1 NC_000913.2 part of glycogen operon, a glycosyl hydrolase, debranching enzyme; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide biosynthetic process [goid 0000271]; glycogen debranching enzyme 3569342 glgX 947941 glgX Escherichia coli K12 glycogen debranching enzyme NP_417889.1 3567369 R 83333 CDS NP_417890.1 16131306 947940 complement(3569339..3571525) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: polysaccharide biosynthetic process [goid 0000271]; 1,4-alpha-glucan branching enzyme 3571525 glgB 947940 glgB Escherichia coli K12 1,4-alpha-glucan branching enzyme NP_417890.1 3569339 R 83333 CDS NP_417891.1 16131307 947939 complement(3571798..3572901) 1 NC_000913.2 aspartate-semialdehyde dehydrogenase; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: threonine biosynthetic process [goid 0009088]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: homoserine biosynthetic process [goid 0009090]; aspartate-semialdehyde dehydrogenase, NAD(P)-binding 3572901 asd 947939 asd Escherichia coli K12 aspartate-semialdehyde dehydrogenase, NAD(P)-binding NP_417891.1 3571798 R 83333 CDS NP_417892.1 16131308 947938 3573094..3573687 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted antibiotic transporter 3573687 yhgN 947938 yhgN Escherichia coli K12 predicted antibiotic transporter NP_417892.1 3573094 D 83333 CDS YP_026221.1 49176355 2847760 complement(3573744..3575084) 1 NC_000913.2 split gene, low-affinity gluconate transport permease protein in GNT I system; GO_component: organelle inner membrane [goid 0019866]; gluconate transporter, low affinity GNT 1 system 3575084 gntU 2847760 gntU Escherichia coli K12 gluconate transporter, low affinity GNT 1 system YP_026221.1 3573744 R 83333 CDS NP_417894.2 90111591 947937 complement(3575088..3575615) 1 NC_000913.2 gluconokinase 2, thermoresistant; gluconate transport, GNT I system; GO_process: glucose metabolic process [goid 0006006]; gluconate kinase 2 3575615 gntK 947937 gntK Escherichia coli K12 gluconate kinase 2 NP_417894.2 3575088 R 83333 CDS YP_026222.1 49176356 947946 complement(3575754..3576749) 1 NC_000913.2 regulator of gluconate (gnt) operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: Entner-Doudoroff pathway [goid 0009255]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3576749 gntR 947946 gntR Escherichia coli K12 DNA-binding transcriptional repressor YP_026222.1 3575754 R 83333 CDS NP_417896.1 16131311 947945 complement(3576973..3577668) 1 NC_000913.2 predicted protein 3577668 yhhW 947945 yhhW Escherichia coli K12 predicted protein NP_417896.1 3576973 R 83333 CDS NP_417897.1 16131312 947944 complement(3577791..3578828) 1 NC_000913.2 putative regulator; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 3578828 yhhX 947944 yhhX Escherichia coli K12 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_417897.1 3577791 R 83333 CDS NP_417898.1 16131313 947943 3579161..3579649 1 NC_000913.2 predicted acetyltransferase 3579649 yhhY 947943 yhhY Escherichia coli K12 predicted acetyltransferase NP_417898.1 3579161 D 83333 CDS NP_417899.1 16131314 947952 3579886..3581064 1 NC_000913.2 conserved protein 3581064 yhhZ 947952 yhhZ Escherichia coli K12 conserved protein NP_417899.1 3579886 D 83333 CDS b3443 947951 join(3581061..3581441,3582219..3582332) 1 NC_000913.2 conserved protein; 3582332 yrhA 947951 yrhA Escherichia coli K12 3581061 D 83333 CDS NP_417901.1 16131316 947950 3581506..3581781 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 3581781 insA 947950 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA NP_417901.1 3581506 D 83333 CDS NP_417902.1 16131317 947949 3581700..3582203 1 NC_000913.2 IS1 transposase InsAB' 3582203 insB 947949 insB Escherichia coli K12 IS1 transposase InsAB' NP_417902.1 3581700 D 83333 CDS YP_001165327.1 145698318 5061521 3582427..3582582 1 NC_000913.2 hypothetical protein 3582582 yrhD 5061521 yrhD Escherichia coli K12 hypothetical protein YP_001165327.1 3582427 D 83333 CDS NP_417903.1 16131318 947948 3582782..3583066 1 NC_000913.2 predicted protein 3583066 yrhB 947948 yrhB Escherichia coli K12 predicted protein NP_417903.1 3582782 D 83333 CDS NP_417904.1 16131319 947947 complement(3583104..3584846) 1 NC_000913.2 gamma-glutamyltranspeptidase 3584846 ggt 947947 ggt Escherichia coli K12 gamma-glutamyltranspeptidase NP_417904.1 3583104 R 83333 CDS NP_417905.1 16131320 947956 3584966..3585406 1 NC_000913.2 conserved protein 3585406 yhhA 947956 yhhA Escherichia coli K12 conserved protein NP_417905.1 3584966 D 83333 CDS NP_417906.1 16131321 947955 complement(3585393..3586136) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycerol metabolic process [goid 0006071]; glycerophosphodiester phosphodiesterase, cytosolic 3586136 ugpQ 947955 ugpQ Escherichia coli K12 glycerophosphodiester phosphodiesterase, cytosolic NP_417906.1 3585393 R 83333 CDS NP_417907.2 90111593 947953 complement(3586133..3587203) 1 NC_000913.2 ATP-binding component of sn-glycerol 3-phosphate transport system; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit 3587203 ugpC 947953 ugpC Escherichia coli K12 glycerol-3-phosphate transporter subunit NP_417907.2 3586133 R 83333 CDS NP_417908.1 16131323 947959 complement(3587205..3588050) 1 NC_000913.2 sn-glycerol 3-phosphate transport system, integral membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit 3588050 ugpE 947959 ugpE Escherichia coli K12 glycerol-3-phosphate transporter subunit NP_417908.1 3587205 R 83333 CDS NP_417909.1 16131324 947957 complement(3588047..3588934) 1 NC_000913.2 sn-glycerol 3-phosphate transport system, integral membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit 3588934 ugpA 947957 ugpA Escherichia coli K12 glycerol-3-phosphate transporter subunit NP_417909.1 3588047 R 83333 CDS NP_417910.1 16131325 947962 complement(3589032..3590348) 1 NC_000913.2 sn-glycerol 3-phosphate transport system; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate transporter subunit 3590348 ugpB 947962 ugpB Escherichia coli K12 glycerol-3-phosphate transporter subunit NP_417910.1 3589032 R 83333 CDS NP_417911.4 90111594 947961 complement(3590747..3591460) 1 NC_000913.2 ATP-binding component of leucine transport; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit 3591460 livF 947961 livF Escherichia coli K12 leucine/isoleucine/valine transporter subunit NP_417911.4 3590747 R 83333 CDS NP_417912.1 16131327 947967 complement(3591462..3592229) 1 NC_000913.2 ATP-binding component of high-affinity branched-chain amino acid transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit 3592229 livG 947967 livG Escherichia coli K12 leucine/isoleucine/valine transporter subunit NP_417912.1 3591462 R 83333 CDS NP_417913.1 16131328 947966 complement(3592226..3593503) 1 NC_000913.2 high-affinity branched-chain amino acid transport; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit 3593503 livM 947966 livM Escherichia coli K12 leucine/isoleucine/valine transporter subunit NP_417913.1 3592226 R 83333 CDS NP_417914.1 16131329 947965 complement(3593500..3594426) 1 NC_000913.2 high-affinity branched-chain amino acid transport system; membrane component; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit 3594426 livH 947965 livH Escherichia coli K12 leucine/isoleucine/valine transporter subunit NP_417914.1 3593500 R 83333 CDS NP_417915.1 16131330 947964 complement(3594474..3595583) 1 NC_000913.2 high-affinity leucine-specific transport system; periplasmic binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: leucine biosynthetic process [goid 0009098]; leucine transporter subunit 3595583 livK 947964 livK Escherichia coli K12 leucine transporter subunit NP_417915.1 3594474 R 83333 CDS NP_417916.1 16131331 947963 3596007..3596390 1 NC_000913.2 conserved protein 3596390 yhhK 947963 yhhK Escherichia coli K12 conserved protein NP_417916.1 3596007 D 83333 CDS YP_026223.1 49176358 947971 complement(3596578..3597681) 1 NC_000913.2 high-affinity branched-chain amino acid transport protein (ABC superfamily, peri_bind); periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: leucine biosynthetic process [goid 0009098]; leucine/isoleucine/valine transporter subunit 3597681 livJ 947971 livJ Escherichia coli K12 leucine/isoleucine/valine transporter subunit YP_026223.1 3596578 R 83333 CDS NP_417918.1 16131333 947970 complement(3597952..3598806) 1 NC_000913.2 RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; RNA polymerase, sigma 32 (sigma H) factor 3598806 rpoH 947970 rpoH Escherichia coli K12 RNA polymerase, sigma 32 (sigma H) factor NP_417918.1 3597952 R 83333 CDS NP_417919.1 16131334 947969 complement(3599051..3600109) 1 NC_000913.2 cell division membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 3600109 ftsX 947969 ftsX Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_417919.1 3599051 R 83333 CDS NP_417920.1 16131335 947968 complement(3600102..3600770) 1 NC_000913.2 ATP-binding component of a membrane-associated complex involved in cell division; GO_component: cytoplasm [goid 0005737]; predicted transporter subunit: ATP-binding component of ABC superfamily 3600770 ftsE 947968 ftsE Escherichia coli K12 predicted transporter subunit: ATP-binding component of ABC superfamily NP_417920.1 3600102 R 83333 CDS NP_417921.1 16131336 947978 complement(3600773..3602266) 1 NC_000913.2 cell division membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein 3602266 ftsY 947978 ftsY Escherichia coli K12 fused Signal Recognition Particle (SRP) receptor: membrane binding protein/conserved protein NP_417921.1 3600773 R 83333 CDS NP_417922.1 16131337 947977 3602416..3603012 1 NC_000913.2 predicted methyltransferase 3603012 rsmD 947977 rsmD Escherichia coli K12 predicted methyltransferase NP_417922.1 3602416 D 83333 CDS NP_417923.1 16131338 947976 3603002..3603271 1 NC_000913.2 conserved inner membrane protein 3603271 yhhL 947976 yhhL Escherichia coli K12 conserved inner membrane protein NP_417923.1 3603002 D 83333 CDS NP_417924.1 16131339 947975 complement(3603274..3603633) 1 NC_000913.2 putative receptor; conserved protein 3603633 yhhM 947975 yhhM Escherichia coli K12 conserved protein NP_417924.1 3603274 R 83333 CDS NP_417925.1 16131340 947973 3603774..3604400 1 NC_000913.2 putative enzyme; conserved inner membrane protein 3604400 yhhN 947973 yhhN Escherichia coli K12 conserved inner membrane protein NP_417925.1 3603774 D 83333 CDS NP_417926.1 16131341 947972 3604474..3606672 1 NC_000913.2 zinc-transporting ATPase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; GO_process: xenobiotic metabolic process [goid 0006805]; zinc, cobalt and lead efflux system 3606672 zntA 947972 zntA Escherichia coli K12 zinc, cobalt and lead efflux system NP_417926.1 3604474 D 83333 CDS NP_417927.1 16131342 947974 complement(3606774..3607019) 1 NC_000913.2 small protein required for cell growth; affects RpoS stability small ubiquitous RNA-binding protein required for normal growth, cytoplasmic; conserved protein required for cell growth 3607019 sirA 947974 sirA Escherichia coli K12 conserved protein required for cell growth NP_417927.1 3606774 R 83333 CDS NP_417928.1 16131343 947984 3607240..3607905 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3607905 yhhQ 947984 yhhQ Escherichia coli K12 conserved inner membrane protein NP_417928.1 3607240 D 83333 CDS NP_417929.4 90111595 947983 3607978..3608535 1 NC_000913.2 periplasmic protein 3608535 dcrB 947983 dcrB Escherichia coli K12 periplasmic protein NP_417929.4 3607978 D 83333 CDS NP_417930.2 90111596 947982 complement(3608539..3609756) 1 NC_000913.2 putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3609756 yhhS 947982 yhhS Escherichia coli K12 predicted transporter NP_417930.2 3608539 R 83333 CDS NP_417931.4 90111597 947980 3609888..3610937 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein 3610937 yhhT 947980 yhhT Escherichia coli K12 predicted inner membrane protein NP_417931.4 3609888 D 83333 CDS NP_417932.1 16131347 947979 3610992..3611579 1 NC_000913.2 holo-(acyl carrier protein) synthase 2 3611579 acpT 947979 acpT Escherichia coli K12 holo-(acyl carrier protein) synthase 2 NP_417932.1 3610992 D 83333 CDS NP_417933.1 16131348 947981 3611690..3613264 1 NC_000913.2 periplasmic binding protein for nickel; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: taxis [goid 0042330]; nickel transporter subunit 3613264 nikA 947981 nikA Escherichia coli K12 nickel transporter subunit NP_417933.1 3611690 D 83333 CDS NP_417934.1 16131349 947986 3613264..3614208 1 NC_000913.2 transport of nickel, membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; nickel transporter subunit 3614208 nikB 947986 nikB Escherichia coli K12 nickel transporter subunit NP_417934.1 3613264 D 83333 CDS NP_417935.1 16131350 947990 3614205..3615038 1 NC_000913.2 transport of nickel, membrane protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; nickel transporter subunit 3615038 nikC 947990 nikC Escherichia coli K12 nickel transporter subunit NP_417935.1 3614205 D 83333 CDS NP_417936.1 16131351 947989 3615038..3615802 1 NC_000913.2 ATP-binding protein of nickel transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; nickel transporter subunit 3615802 nikD 947989 nikD Escherichia coli K12 nickel transporter subunit NP_417936.1 3615038 D 83333 CDS NP_417937.1 16131352 947987 3615799..3616605 1 NC_000913.2 ATP-binding protein of nickel transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; nickel transporter subunit 3616605 nikE 947987 nikE Escherichia coli K12 nickel transporter subunit NP_417937.1 3615799 D 83333 CDS NP_417938.1 16131353 947995 3616611..3617012 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, Ni-binding 3617012 nikR 947995 nikR Escherichia coli K12 DNA-binding transcriptional repressor, Ni-binding NP_417938.1 3616611 D 83333 CDS YP_026224.1 49176361 947994 3617215..3621450 1 NC_000913.2 rhsB protein in rhs element; rhsB element core protein RshB 3621450 rhsB 947994 rhsB Escherichia coli K12 rhsB element core protein RshB YP_026224.1 3617215 D 83333 CDS NP_417940.2 90111598 947993 3621422..3621805 1 NC_000913.2 predicted protein 3621805 yhhH 947993 yhhH Escherichia coli K12 predicted protein NP_417940.2 3621422 D 83333 CDS b4552 1450291 3621910..3622260 1 NC_000913.2 predicted protein fragment (pseudogene); GO_component: cytoplasm [goid 0005737]; 3622260 yrhC 1450291 yrhC Escherichia coli K12 3621910 D 83333 CDS NP_417941.1 16131356 947992 3622401..3623537 1 NC_000913.2 putative receptor; predicted transposase 3623537 yhhI 947992 yhhI Escherichia coli K12 predicted transposase NP_417941.1 3622401 D 83333 CDS NP_417942.5 145698319 947991 complement(3623702..3624829) 1 NC_000913.2 putative transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter subunit: membrane component of ABC superfamily 3624829 yhhJ 947991 yhhJ Escherichia coli K12 predicted transporter subunit: membrane component of ABC superfamily NP_417942.5 3623702 R 83333 CDS YP_026225.1 49176363 947998 complement(3624826..3627561) 1 NC_000913.2 ribosome-associated ATPase, ATP-binding domain (N-terminal); GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein 3627561 rbbA 947998 rbbA Escherichia coli K12 fused ribosome-associated ATPase: ATP-binding protein/ATP-binding protein/predicted membrane protein YP_026225.1 3624826 R 83333 CDS NP_417944.1 16131359 948003 complement(3627558..3628625) 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted HlyD family secretion protein 3628625 yhiI 948003 yhiI Escherichia coli K12 predicted HlyD family secretion protein NP_417944.1 3627558 R 83333 CDS NP_417945.1 16131360 948001 complement(3628991..3630613) 1 NC_000913.2 predicted protein 3630613 yhiJ 948001 yhiJ Escherichia coli K12 predicted protein NP_417945.1 3628991 R 83333 CDS b4660 947999 complement(join(3630875..3631288,3631289..3632481)) 1 NC_000913.2 predicted protein; 3632481 yhiL 947999 yhiL Escherichia coli K12 3630875 R 83333 CDS NP_417948.3 145698320 947997 3632822..3633916 1 NC_000913.2 conserved inner membrane protein 3633916 yhiM 947997 yhiM Escherichia coli K12 conserved inner membrane protein NP_417948.3 3632822 D 83333 CDS NP_417949.1 16131364 947996 complement(3634231..3635433) 1 NC_000913.2 predicted oxidoreductase with FAD/NAD(P)-binding domain 3635433 yhiN 947996 yhiN Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain NP_417949.1 3634231 R 83333 CDS NP_417950.1 16131365 948009 3635665..3637164 1 NC_000913.2 low-affinity phosphate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter, low-affinity 3637164 pitA 948009 pitA Escherichia coli K12 phosphate transporter, low-affinity NP_417950.1 3635665 D 83333 CDS NP_417951.1 16131366 948008 complement(3637408..3637743) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to stress [goid 0006950]; GO_process: xenobiotic metabolic process [goid 0006805]; predicted universal stress (ethanol tolerance) protein B 3637743 uspB 948008 uspB Escherichia coli K12 predicted universal stress (ethanol tolerance) protein B NP_417951.1 3637408 R 83333 CDS NP_417952.1 16131367 948007 3638134..3638568 1 NC_000913.2 universal stress protein; broad regulatory function?; GO_component: cytoplasm [goid 0005737]; GO_process: response to stress [goid 0006950]; universal stress global response regulator 3638568 uspA 948007 uspA Escherichia coli K12 universal stress global response regulator NP_417952.1 3638134 D 83333 CDS NP_417953.1 16131368 948006 3638885..3640354 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3640354 yhiP 948006 yhiP Escherichia coli K12 predicted transporter NP_417953.1 3638885 D 83333 CDS NP_417954.1 16131369 948005 complement(3640403..3641155) 1 NC_000913.2 predicted SAM-dependent methyltransferase 3641155 yhiQ 948005 yhiQ Escherichia coli K12 predicted SAM-dependent methyltransferase NP_417954.1 3640403 R 83333 CDS NP_417955.1 16131370 948016 complement(3641163..3643205) 1 NC_000913.2 oligopeptidase A 3643205 prlC 948016 prlC Escherichia coli K12 oligopeptidase A NP_417955.1 3641163 R 83333 CDS NP_417956.1 16131371 948012 3643408..3644250 1 NC_000913.2 predicted DNA (exogenous) processing protein 3644250 yhiR 948012 yhiR Escherichia coli K12 predicted DNA (exogenous) processing protein NP_417956.1 3643408 D 83333 CDS NP_417957.1 16131372 948014 3644322..3645674 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; glutathione oxidoreductase 3645674 gor 948014 gor Escherichia coli K12 glutathione oxidoreductase NP_417957.1 3644322 D 83333 CDS YP_001165328.1 145698321 5061522 complement(3645728..3645856) 1 NC_000913.2 Damage inducible, function unknown 3645856 dinQ 5061522 dinQ Escherichia coli K12 Damage inducible, function unknown YP_001165328.1 3645728 R 83333 CDS NP_417958.1 16131373 948013 3646551..3646904 1 NC_000913.2 transcriptional repressor of chromosomal ars operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; GO_process: response to drug [goid 0042493]; DNA-binding transcriptional repressor 3646904 arsR 948013 arsR Escherichia coli K12 DNA-binding transcriptional repressor NP_417958.1 3646551 D 83333 CDS NP_417959.4 90111602 948011 3646958..3648247 1 NC_000913.2 arsenical pump membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: xenobiotic metabolic process [goid 0006805]; arsenite/antimonite transporter 3648247 arsB 948011 arsB Escherichia coli K12 arsenite/antimonite transporter NP_417959.4 3646958 D 83333 CDS NP_417960.1 16131375 948018 3648260..3648685 1 NC_000913.2 GO_process: response to drug [goid 0042493]; arsenate reductase 3648685 arsC 948018 arsC Escherichia coli K12 arsenate reductase NP_417960.1 3648260 D 83333 CDS b3504 948017 join(3649314..3650054,3651254..3651736) 1 NC_000913.2 predicted protein; 3651736 yhiS 948017 yhiS Escherichia coli K12 3649314 D 83333 CDS NP_417962.1 16131377 948015 complement(3650205..3651221) 1 NC_000913.2 IS5 transposase and trans-activator 3651221 insH 948015 insH Escherichia coli K12 IS5 transposase and trans-activator NP_417962.1 3650205 R 83333 CDS NP_417963.4 90111603 948022 3651984..3652550 1 NC_000913.2 outer membrane protein induced after carbon starvation; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: response to starvation [goid 0042594]; outer membrane lipoprotein 3652550 slp 948022 slp Escherichia coli K12 outer membrane lipoprotein NP_417963.4 3651984 D 83333 CDS NP_417964.1 16131379 948021 3652706..3653236 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding ranscriptional regulator 3653236 dctR 948021 dctR Escherichia coli K12 predicted DNA-binding ranscriptional regulator NP_417964.1 3652706 D 83333 CDS NP_417965.1 16131380 948019 complement(3653278..3653925) 1 NC_000913.2 putative transport ATPase; predicted Mg(2+) transport ATPase inner membrane protein 3653925 yhiD 948019 yhiD Escherichia coli K12 predicted Mg(2+) transport ATPase inner membrane protein NP_417965.1 3653278 R 83333 CDS NP_417966.4 162135912 948026 complement(3653989..3654315) 1 NC_000913.2 acid-resistance protein 3654315 hdeB 948026 hdeB Escherichia coli K12 acid-resistance protein NP_417966.4 3653989 R 83333 CDS NP_417967.1 16131382 948025 complement(3654431..3654763) 1 NC_000913.2 stress response protein acid-resistance protein 3654763 hdeA 948025 hdeA Escherichia coli K12 stress response protein acid-resistance protein NP_417967.1 3654431 R 83333 CDS NP_417968.1 16131383 948024 3655018..3655590 1 NC_000913.2 acid-resistance membrane protein 3655590 hdeD 948024 hdeD Escherichia coli K12 acid-resistance membrane protein NP_417968.1 3655018 D 83333 CDS NP_417969.1 16131384 948023 3656389..3656916 1 NC_000913.2 DNA-binding transcriptional activator 3656916 gadE 948023 gadE Escherichia coli K12 DNA-binding transcriptional activator NP_417969.1 3656389 D 83333 CDS NP_417970.1 16131385 948031 3657255..3658412 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug resistance efflux transporter 3658412 mdtE 948031 mdtE Escherichia coli K12 multidrug resistance efflux transporter NP_417970.1 3657255 D 83333 CDS NP_417971.1 16131386 948030 3658437..3661550 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; multidrug transporter, RpoS-dependent 3661550 mdtF 948030 mdtF Escherichia coli K12 multidrug transporter, RpoS-dependent NP_417971.1 3658437 D 83333 CDS NP_417972.1 16131387 948029 complement(3661913..3662641) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 3662641 gadW 948029 gadW Escherichia coli K12 DNA-binding transcriptional activator NP_417972.1 3661913 R 83333 CDS NP_417973.1 16131388 948028 complement(3663009..3663833) 1 NC_000913.2 GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3663833 gadX 948028 gadX Escherichia coli K12 DNA-binding transcriptional dual regulator NP_417973.1 3663009 R 83333 CDS NP_417974.1 16131389 948027 complement(3664203..3665603) 1 NC_000913.2 glutamate decarboxylase isozyme; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: amino acid metabolic process [goid 0006520]; glutamate decarboxylase A, PLP-dependent 3665603 gadA 948027 gadA Escherichia coli K12 glutamate decarboxylase A, PLP-dependent NP_417974.1 3664203 R 83333 CDS NP_417975.1 16131390 948038 complement(3665814..3667211) 1 NC_000913.2 putative cytochrome C peroxidase; GO_process: cytochrome complex assembly [goid 0017004]; predicted cytochrome C peroxidase 3667211 yhjA 948038 yhjA Escherichia coli K12 predicted cytochrome C peroxidase NP_417975.1 3665814 R 83333 CDS NP_417976.1 16131391 948037 3667615..3669264 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; cytoplasmic trehalase 3669264 treF 948037 treF Escherichia coli K12 cytoplasmic trehalase NP_417976.1 3667615 D 83333 CDS NP_417977.1 16131392 948036 complement(3669315..3669917) 1 NC_000913.2 putative regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding response regulator in two-component regulatory system 3669917 yhjB 948036 yhjB Escherichia coli K12 predicted DNA-binding response regulator in two-component regulatory system NP_417977.1 3669315 R 83333 CDS NP_417978.2 145698322 948035 3670437..3671336 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3671336 yhjC 948035 yhjC Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_417978.2 3670437 D 83333 CDS NP_417979.1 16131394 948033 3671385..3672398 1 NC_000913.2 conserved inner membrane protein 3672398 yhjD 948033 yhjD Escherichia coli K12 conserved inner membrane protein NP_417979.1 3671385 D 83333 CDS NP_417980.1 16131395 948032 3672809..3674131 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3674131 yhjE 948032 yhjE Escherichia coli K12 predicted transporter NP_417980.1 3672809 D 83333 CDS NP_417981.1 16131396 948043 complement(3674313..3676388) 1 NC_000913.2 predicted outer membrane biogenesis protein 3676388 yhjG 948043 yhjG Escherichia coli K12 predicted outer membrane biogenesis protein NP_417981.1 3674313 R 83333 CDS NP_417982.2 90111605 948042 complement(3676443..3677210) 1 NC_000913.2 EAL domain containing protein involved in flagellar function 3677210 yhjH 948042 yhjH Escherichia coli K12 EAL domain containing protein involved in flagellar function NP_417982.2 3676443 R 83333 CDS NP_417983.2 90111606 948041 3677442..3678371 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; ketodeoxygluconokinase 3678371 kdgK 948041 kdgK Escherichia coli K12 ketodeoxygluconokinase NP_417983.2 3677442 D 83333 CDS NP_417984.1 16131399 948040 complement(3678467..3679963) 1 NC_000913.2 predicted zinc-dependent peptidase 3679963 yhjJ 948040 yhjJ Escherichia coli K12 predicted zinc-dependent peptidase NP_417984.1 3678467 R 83333 CDS NP_417985.1 16131400 948039 complement(3680184..3681470) 1 NC_000913.2 uptake of C4-dicarboxylic acids; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: sodium:dicarboxylate/tricarboxylate symporter activity [goid 0005311]; GO_process: carbohydrate catabolic process [goid 0016052]; C4-dicarboxylic acid, orotate and citrate transporter 3681470 dctA 948039 dctA Escherichia coli K12 C4-dicarboxylic acid, orotate and citrate transporter NP_417985.1 3680184 R 83333 CDS NP_417986.3 145698323 948048 complement(3681653..3683608) 1 NC_000913.2 predicted diguanylate cyclase 3683608 yhjK 948048 yhjK Escherichia coli K12 predicted diguanylate cyclase NP_417986.3 3681653 R 83333 CDS YP_026226.3 145698324 948047 complement(3683723..3687145) 1 NC_000913.2 putative oxidoreductase subunit; cellulose synthase subunit 3687145 bcsC 948047 bcsC Escherichia coli K12 cellulose synthase subunit YP_026226.3 3683723 R 83333 CDS NP_417988.1 16131403 948046 complement(3687178..3688284) 1 NC_000913.2 GO_component: extracellular region [goid 0005576]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; endo-1,4-D-glucanase 3688284 bcsZ 948046 bcsZ Escherichia coli K12 endo-1,4-D-glucanase NP_417988.1 3687178 R 83333 CDS NP_417989.1 16131404 948045 complement(3688291..3690630) 1 NC_000913.2 regulator of cellulose synthase, cyclic di-GMP binding 3690630 bcsB 948045 bcsB Escherichia coli K12 regulator of cellulose synthase, cyclic di-GMP binding NP_417989.1 3688291 R 83333 CDS NP_417990.4 90111609 948053 complement(3690641..3693259) 1 NC_000913.2 putative cellulose synthase; cellulose synthase, catalytic subunit 3693259 bcsA 948053 bcsA Escherichia coli K12 cellulose synthase, catalytic subunit NP_417990.4 3690641 R 83333 CDS b3534 948052 complement(3693256..3694008) 1 NC_000913.2 cell division protein (chromosome partitioning ATPase) (pseudogene); 3694008 yhjQ 948052 yhjQ Escherichia coli K12 3693256 R 83333 CDS NP_417992.1 16131407 948051 complement(3694020..3694208) 1 NC_000913.2 conserved protein 3694208 yhjR 948051 yhjR Escherichia coli K12 conserved protein NP_417992.1 3694020 R 83333 CDS NP_417993.1 16131408 948050 3694481..3696052 1 NC_000913.2 conserved hypothetical protein Salmonella ortholog implicated in the biosynthesis of cellulose, although the precise role remains unclear; conserved protein 3696052 bcsE 948050 bcsE Escherichia coli K12 conserved protein NP_417993.1 3694481 D 83333 CDS NP_417994.2 90111610 948059 3696049..3696240 1 NC_000913.2 predicted protein 3696240 bcsF 948059 bcsF Escherichia coli K12 predicted protein NP_417994.2 3696049 D 83333 CDS NP_417995.1 16131410 948058 3696237..3697916 1 NC_000913.2 predicted inner membrane protein 3697916 bcsG 948058 bcsG Escherichia coli K12 predicted inner membrane protein NP_417995.1 3696237 D 83333 CDS YP_026227.1 49176368 2847730 complement(3698003..3698110) 1 NC_000913.2 small toxic polypeptide; toxic polypeptide, small 3698110 ldrD 2847730 ldrD Escherichia coli K12 toxic polypeptide, small YP_026227.1 3698003 R 83333 CDS NP_417996.1 16131411 948057 3698586..3699857 1 NC_000913.2 putative transporter protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3699857 yhjV 948057 yhjV Escherichia coli K12 predicted transporter NP_417996.1 3698586 D 83333 CDS NP_417997.1 16131412 948056 complement(3699887..3700891) 1 NC_000913.2 putative ATP-binding component of dipeptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; dipeptide transporter 3700891 dppF 948056 dppF Escherichia coli K12 dipeptide transporter NP_417997.1 3699887 R 83333 CDS NP_417998.1 16131413 948065 complement(3700888..3701871) 1 NC_000913.2 putative ATP-binding component of dipeptide transport system; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; dipeptide transporter 3701871 dppD 948065 dppD Escherichia coli K12 dipeptide transporter NP_417998.1 3700888 R 83333 CDS NP_417999.1 16131414 948064 complement(3701882..3702784) 1 NC_000913.2 dipeptide transport system permease protein 2; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; dipeptide transporter 3702784 dppC 948064 dppC Escherichia coli K12 dipeptide transporter NP_417999.1 3701882 R 83333 CDS NP_418000.1 16131415 948063 complement(3702794..3703813) 1 NC_000913.2 dipeptide transport system permease protein 1; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; dipeptide transporter 3703813 dppB 948063 dppB Escherichia coli K12 dipeptide transporter NP_418000.1 3702794 R 83333 CDS NP_418001.1 16131416 948062 complement(3704121..3705728) 1 NC_000913.2 dipeptide transport protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: amino acid catabolic process [goid 0009063]; dipeptide transporter 3705728 dppA 948062 dppA Escherichia coli K12 dipeptide transporter NP_418001.1 3704121 R 83333 CDS NP_418002.2 90111611 948068 complement(3706807..3708498) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted metal dependent hydrolase 3708498 eptB 948068 eptB Escherichia coli K12 predicted metal dependent hydrolase NP_418002.2 3706807 R 83333 CDS NP_418003.1 16131418 948066 complement(3708822..3710030) 1 NC_000913.2 putative resistance protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; predicted transporter 3710030 yhjX 948066 yhjX Escherichia coli K12 predicted transporter NP_418003.1 3708822 R 83333 CDS NP_418004.4 90111612 948073 complement(3710259..3710957) 1 NC_000913.2 putative lipase; GO_process: fatty acid oxidation [goid 0019395]; conserved protein 3710957 yhjY 948073 yhjY Escherichia coli K12 conserved protein NP_418004.4 3710259 R 83333 CDS NP_418005.1 16131420 947137 3711115..3711678 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; 3-methyl-adenine DNA glycosylase I, constitutive 3711678 tag 947137 tag Escherichia coli K12 3-methyl-adenine DNA glycosylase I, constitutive NP_418005.1 3711115 D 83333 CDS NP_418006.1 16131421 946460 3711675..3712115 1 NC_000913.2 predicted acyltransferase with acyl-CoA N-acyltransferase domain 3712115 yiaC 946460 yiaC Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_418006.1 3711675 D 83333 CDS NP_418007.3 145698325 946915 complement(3712084..3714417) 1 NC_000913.2 GO_process: biotin biosynthetic process [goid 0009102]; biotin sulfoxide reductase 3714417 bisC 946915 bisC Escherichia coli K12 biotin sulfoxide reductase NP_418007.3 3712084 R 83333 CDS YP_026228.1 49176370 948075 3714570..3715229 1 NC_000913.2 putative outer membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted outer membrane lipoprotein 3715229 yiaD 948075 yiaD Escherichia coli K12 predicted outer membrane lipoprotein YP_026228.1 3714570 D 83333 CDS NP_418009.2 90111614 948074 3715333..3716307 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 2-keto-D-gluconate reductase (glyoxalate reductase) (2-ketoaldonate reductase) 3716307 ghrB 948074 ghrB Escherichia coli K12 2-keto-D-gluconate reductase (glyoxalate reductase) (2-ketoaldonate reductase) NP_418009.2 3715333 D 83333 CDS NP_418010.2 90111615 948072 complement(3716357..3717067) 1 NC_000913.2 conserved protein 3717067 yiaF 948072 yiaF Escherichia coli K12 conserved protein NP_418010.2 3716357 R 83333 CDS NP_418011.1 16131426 948071 3717501..3717791 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 3717791 yiaG 948071 yiaG Escherichia coli K12 predicted transcriptional regulator NP_418011.1 3717501 D 83333 CDS NP_418012.1 16131427 948070 3718072..3718284 1 NC_000913.2 cold shock protein 7.4, transcriptional activator of hns; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: response to temperature stimulus [goid 0009266]; major cold shock protein 3718284 cspA 948070 cspA Escherichia coli K12 major cold shock protein NP_418012.1 3718072 D 83333 CDS b4647 5625573 complement(3718471..3718655) 1 NC_000913.2 pseudogene, overlapping regulatory peptide, enables hokB; 3718655 mokA 5625573 mokA Escherichia coli K12 3718471 R 83333 CDS YP_026229.1 49176371 2847732 complement(3718471..3718623) 1 NC_000913.2 small toxic membrane polypeptide IS150 insertion and apparent 39 bp deletion disrupt the associated mokA and sokA genes; toxic polypeptide, small 3718623 hokA 2847732 hokA Escherichia coli K12 toxic polypeptide, small YP_026229.1 3718471 R 83333 CDS NP_418014.1 16131428 948082 3718703..3719224 1 NC_000913.2 IS150 protein InsA 3719224 insJ 948082 insJ Escherichia coli K12 IS150 protein InsA NP_418014.1 3718703 D 83333 CDS NP_418015.1 16131429 948081 3719221..3720072 1 NC_000913.2 IS150 conserved protein InsB 3720072 insK 948081 insK Escherichia coli K12 IS150 conserved protein InsB NP_418015.1 3719221 D 83333 CDS NP_418016.1 16131430 948080 complement(3720351..3722420) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glycine tRNA synthetase, beta subunit 3722420 glyS 948080 glyS Escherichia coli K12 glycine tRNA synthetase, beta subunit NP_418016.1 3720351 R 83333 CDS NP_418017.1 16131431 948079 complement(3722430..3723341) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; glycine tRNA synthetase, alpha subunit 3723341 glyQ 948079 glyQ Escherichia coli K12 glycine tRNA synthetase, alpha subunit NP_418017.1 3722430 R 83333 CDS YP_588469.1 94541126 1450292 complement(3723436..3723735) 1 NC_000913.2 GO_component: cell outer membrane [goid 0009279]; predicted protein 3723735 ysaB 1450292 ysaB Escherichia coli K12 predicted protein YP_588469.1 3723436 R 83333 CDS NP_418018.1 16131432 948077 3723910..3724905 1 NC_000913.2 conserved inner membrane protein 3724905 wecH 948077 wecH Escherichia coli K12 conserved inner membrane protein NP_418018.1 3723910 D 83333 CDS NP_418019.4 90111616 948078 complement(3724947..3725384) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 3725384 yiaA 948078 yiaA Escherichia coli K12 conserved inner membrane protein NP_418019.4 3724947 R 83333 CDS NP_418020.2 90111617 948152 complement(3725430..3725771) 1 NC_000913.2 conserved inner membrane protein 3725771 yiaB 948152 yiaB Escherichia coli K12 conserved inner membrane protein NP_418020.2 3725430 R 83333 CDS NP_418021.1 16131435 948133 complement(3725940..3727394) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; xylulokinase 3727394 xylB 948133 xylB Escherichia coli K12 xylulokinase NP_418021.1 3725940 R 83333 CDS NP_418022.1 16131436 948141 complement(3727466..3728788) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: glucose metabolic process [goid 0006006]; D-xylose isomerase 3728788 xylA 948141 xylA Escherichia coli K12 D-xylose isomerase NP_418022.1 3727466 R 83333 CDS NP_418023.1 16131437 948090 3729154..3730146 1 NC_000913.2 xylose binding protein transport system; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; D-xylose transporter subunit 3730146 xylF 948090 xylF Escherichia coli K12 D-xylose transporter subunit NP_418023.1 3729154 D 83333 CDS NP_418024.1 16131438 948127 3730224..3731765 1 NC_000913.2 putative ATP-binding protein of xylose transport system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused D-xylose transporter subunits of ABC superfamily: ATP-binding components 3731765 xylG 948127 xylG Escherichia coli K12 fused D-xylose transporter subunits of ABC superfamily: ATP-binding components NP_418024.1 3730224 D 83333 CDS NP_418025.1 16131439 948083 3731743..3732924 1 NC_000913.2 putative xylose transport, membrane component; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-xylose transporter subunit 3732924 xylH 948083 xylH Escherichia coli K12 D-xylose transporter subunit NP_418025.1 3731743 D 83333 CDS NP_418026.1 16131440 948086 3733002..3734180 1 NC_000913.2 putative regulator of xyl operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, xylose-binding 3734180 xylR 948086 xylR Escherichia coli K12 DNA-binding transcriptional activator, xylose-binding NP_418026.1 3733002 D 83333 CDS YP_026230.1 49176373 948089 complement(3734376..3735200) 1 NC_000913.2 putative ATP-binding protein; conserved protein 3735200 bax 948089 bax Escherichia coli K12 conserved protein YP_026230.1 3734376 R 83333 CDS NP_418028.1 16131442 948088 3735520..3737550 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: polysaccharide catabolic process [goid 0000272]; GO_process: proteolysis [goid 0006508]; alpha-amylase 3737550 malS 948088 malS Escherichia coli K12 alpha-amylase NP_418028.1 3735520 D 83333 CDS YP_026231.1 49176374 948087 3737728..3738981 1 NC_000913.2 alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C; GO_process: alanine biosynthetic process [goid 0006523]; valine-pyruvate aminotransferase 3738981 avtA 948087 avtA Escherichia coli K12 valine-pyruvate aminotransferase YP_026231.1 3737728 D 83333 CDS NP_418030.1 16131444 948085 complement(3739132..3739605) 1 NC_000913.2 predicted hydrogenase, 4Fe-4S ferredoxin-type component 3739605 ysaA 948085 ysaA Escherichia coli K12 predicted hydrogenase, 4Fe-4S ferredoxin-type component NP_418030.1 3739132 R 83333 CDS NP_418031.1 16131445 948084 complement(3739707..3740555) 1 NC_000913.2 GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional repressor 3740555 yiaJ 948084 yiaJ Escherichia coli K12 predicted DNA-binding transcriptional repressor NP_418031.1 3739707 R 83333 CDS NP_418032.1 16131446 948096 3740756..3741754 1 NC_000913.2 putative dehydrogenase; 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent 3741754 yiaK 948096 yiaK Escherichia coli K12 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent NP_418032.1 3740756 D 83333 CDS NP_418033.1 16131447 948094 3741766..3742233 1 NC_000913.2 putative lipase; conserved protein 3742233 yiaL 948094 yiaL Escherichia coli K12 conserved protein NP_418033.1 3741766 D 83333 CDS NP_418034.1 16131448 948093 3742351..3742824 1 NC_000913.2 predicted transporter 3742824 yiaM 948093 yiaM Escherichia coli K12 predicted transporter NP_418034.1 3742351 D 83333 CDS YP_026232.1 49176375 948092 3742827..3744104 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3744104 yiaN 948092 yiaN Escherichia coli K12 predicted transporter YP_026232.1 3742827 D 83333 CDS NP_418036.1 16131450 948091 3744117..3745103 1 NC_000913.2 putative solute-binding transport protein; predicted transporter 3745103 yiaO 948091 yiaO Escherichia coli K12 predicted transporter NP_418036.1 3744117 D 83333 CDS NP_418037.1 16131451 948101 3745107..3746603 1 NC_000913.2 L-xylulose kinase, cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; L-xylulose kinase 3746603 lyx 948101 lyx Escherichia coli K12 L-xylulose kinase NP_418037.1 3745107 D 83333 CDS NP_418038.1 16131452 948098 3746600..3747262 1 NC_000913.2 probable 3-hexulose 6-phosphate synthase; 3-keto-L-gulonate 6-phosphate decarboxylase 3747262 sgbH 948098 sgbH Escherichia coli K12 3-keto-L-gulonate 6-phosphate decarboxylase NP_418038.1 3746600 D 83333 CDS NP_418039.2 90111618 948100 3747255..3748115 1 NC_000913.2 predicted L-xylulose 5-phosphate 3-epimerase 3748115 sgbU 948100 sgbU Escherichia coli K12 predicted L-xylulose 5-phosphate 3-epimerase NP_418039.2 3747255 D 83333 CDS NP_418040.1 16131454 948099 3748109..3748804 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; L-ribulose-5-phosphate 4-epimerase 3748804 sgbE 948099 sgbE Escherichia coli K12 L-ribulose-5-phosphate 4-epimerase NP_418040.1 3748109 D 83333 CDS b4648 5625574 complement(3748836..3748937) 1 NC_000913.2 pseudogene; 3748937 ysaC 5625574 ysaC Escherichia coli K12 3748836 R 83333 CDS b4649 5625575 3748941..3749132 1 NC_000913.2 pseudogene, internal sequence remnant; 3749132 ysaD 5625575 ysaD Escherichia coli K12 3748941 D 83333 CDS NP_418041.1 16131455 948097 complement(3749151..3749891) 1 NC_000913.2 putative outer membrane protein; GO_component: cell outer membrane [goid 0009279]; predicted protein 3749891 yiaT 948097 yiaT Escherichia coli K12 predicted protein NP_418041.1 3749151 R 83333 CDS NP_418042.1 16131456 948107 3750015..3750989 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3750989 yiaU 948107 yiaU Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418042.1 3750015 D 83333 CDS NP_418043.1 16131457 948106 complement(3750986..3752122) 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; membrane fusion protein (MFP) component of efflux pump, signal anchor 3752122 yiaV 948106 yiaV Escherichia coli K12 membrane fusion protein (MFP) component of efflux pump, signal anchor NP_418043.1 3750986 R 83333 CDS NP_418044.1 16131458 948105 complement(3752128..3752451) 1 NC_000913.2 conserved inner membrane protein 3752451 yiaW 948105 yiaW Escherichia coli K12 conserved inner membrane protein NP_418044.1 3752128 R 83333 CDS NP_418045.4 90111619 948104 complement(3752996..3754534) 1 NC_000913.2 aldehyde dehydrogenase B (lactaldehyde dehydrogenase); GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: methylglyoxal metabolic process [goid 0009438]; aldehyde dehydrogenase B 3754534 aldB 948104 aldB Escherichia coli K12 aldehyde dehydrogenase B NP_418045.4 3752996 R 83333 CDS YP_026233.1 49176377 948102 complement(3754699..3755850) 1 NC_000913.2 putative oxidoreductase; predicted Fe-containing alcohol dehydrogenase 3755850 yiaY 948102 yiaY Escherichia coli K12 predicted Fe-containing alcohol dehydrogenase YP_026233.1 3754699 R 83333 CDS NP_418047.1 16131461 948103 complement(3756040..3757884) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; selenocysteinyl-tRNA-specific translation factor 3757884 selB 948103 selB Escherichia coli K12 selenocysteinyl-tRNA-specific translation factor NP_418047.1 3756040 R 83333 CDS NP_418048.1 16131462 948124 complement(3757881..3759272) 1 NC_000913.2 selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase; GO_component: cytoplasm [goid 0005737]; GO_process: pyridoxine biosynthetic process [goid 0008615]; GO_process: RNA modification [goid 0009451]; selenocysteine synthase 3759272 selA 948124 selA Escherichia coli K12 selenocysteine synthase NP_418048.1 3757881 R 83333 CDS NP_418049.1 16131463 948113 complement(3759370..3759978) 1 NC_000913.2 putative S-transferase; predicted glutathione S-transferase 3759978 yibF 948113 yibF Escherichia coli K12 predicted glutathione S-transferase NP_418049.1 3759370 R 83333 CDS NP_418050.1 16131464 948120 3760206..3764339 1 NC_000913.2 rhsA protein in rhs element; rhsA element core protein RshA 3764339 rhsA 948120 rhsA Escherichia coli K12 rhsA element core protein RshA NP_418050.1 3760206 D 83333 CDS NP_418051.1 16131465 948108 3764360..3765202 1 NC_000913.2 lyase containing HEAT-repeat 3765202 yibA 948108 yibA Escherichia coli K12 lyase containing HEAT-repeat NP_418051.1 3764360 D 83333 CDS b3595 948112 3765244..3766188 1 NC_000913.2 predicted Rhs-family protein; 3766188 yibJ 948112 yibJ Escherichia coli K12 3765244 D 83333 CDS NP_418053.1 16131467 948111 3766200..3766661 1 NC_000913.2 conserved protein 3766661 yibG 948111 yibG Escherichia coli K12 conserved protein NP_418053.1 3766200 D 83333 CDS b4650 5625576 3766662..3766913 1 NC_000913.2 pseudogene, Rhs family; 3766913 yibS 5625576 yibS Escherichia coli K12 3766662 D 83333 CDS b4651 5625577 join(3766915..3766998,3767016..3767279) 1 NC_000913.2 pseudogene, rhsA-linked; 3767279 yibW 5625577 yibW Escherichia coli K12 3766915 D 83333 CDS YP_001165329.1 145698326 5061524 3767368..3767703 1 NC_000913.2 hypothetical protein, no homologs 3767703 yibV 5061524 yibV Escherichia coli K12 hypothetical protein, no homologs YP_001165329.1 3767368 D 83333 CDS b4652 5625578 join(3767971..3768057,3768056..3768169) 1 NC_000913.2 pseudogene, H repeat-associated protein; 3768169 yibU 5625578 yibU Escherichia coli K12 3767971 D 83333 CDS NP_418054.1 16131468 948110 complement(3768266..3769402) 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted protein 3769402 yibH 948110 yibH Escherichia coli K12 predicted protein NP_418054.1 3768266 R 83333 CDS NP_418055.1 16131469 948109 complement(3769405..3769767) 1 NC_000913.2 predicted inner membrane protein 3769767 yibI 948109 yibI Escherichia coli K12 predicted inner membrane protein NP_418055.1 3769405 R 83333 CDS NP_418056.1 16131470 948118 3770304..3772217 1 NC_000913.2 PTS system, mannitol-specific enzyme IIABC components; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components 3772217 mtlA 948118 mtlA Escherichia coli K12 fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components NP_418056.1 3770304 D 83333 CDS NP_418057.1 16131471 948117 3772447..3773595 1 NC_000913.2 mannitol-1-phosphate dehydrogenase; GO_process: carbohydrate catabolic process [goid 0016052]; mannitol-1-phosphate dehydrogenase, NAD(P)-binding 3773595 mtlD 948117 mtlD Escherichia coli K12 mannitol-1-phosphate dehydrogenase, NAD(P)-binding NP_418057.1 3772447 D 83333 CDS NP_418058.1 16131472 948116 3773595..3774182 1 NC_000913.2 repressor for mtl; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding repressor 3774182 mtlR 948116 mtlR Escherichia coli K12 DNA-binding repressor NP_418058.1 3773595 D 83333 CDS YP_588470.1 94541127 1450299 complement(3774194..3774403) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 3774403 yibT 1450299 yibT Escherichia coli K12 predicted protein YP_588470.1 3774194 R 83333 CDS NP_418059.1 16131473 948115 3774688..3775050 1 NC_000913.2 conserved protein 3775050 yibL 948115 yibL Escherichia coli K12 conserved protein NP_418059.1 3774688 D 83333 CDS NP_418060.1 16131474 948114 3775422..3777077 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; L-lactate permease 3777077 lldP 948114 lldP Escherichia coli K12 L-lactate permease NP_418060.1 3775422 D 83333 CDS NP_418061.1 16131475 948122 3777077..3777853 1 NC_000913.2 transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: aerobic respiration [goid 0009060]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 3777853 lldR 948122 lldR Escherichia coli K12 DNA-binding transcriptional repressor NP_418061.1 3777077 D 83333 CDS NP_418062.1 16131476 948121 3777850..3779040 1 NC_000913.2 L-lactate dehydrogenase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; L-lactate dehydrogenase, FMN-linked 3779040 lldD 948121 lldD Escherichia coli K12 L-lactate dehydrogenase, FMN-linked NP_418062.1 3777850 D 83333 CDS NP_418063.1 16131477 948119 3779238..3779711 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; predicted rRNA methylase 3779711 yibK 948119 yibK Escherichia coli K12 predicted rRNA methylase NP_418063.1 3779238 D 83333 CDS NP_418064.1 16131478 948126 complement(3779764..3780585) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: cysteine biosynthetic process [goid 0019344]; serine acetyltransferase 3780585 cysE 948126 cysE Escherichia coli K12 serine acetyltransferase NP_418064.1 3779764 R 83333 CDS NP_418065.1 16131479 948125 complement(3780665..3781684) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycerol metabolic process [goid 0006071]; GO_process: phosphorus metabolic process [goid 0006793]; glycerol-3-phosphate dehydrogenase (NAD+) 3781684 gpsA 948125 gpsA Escherichia coli K12 glycerol-3-phosphate dehydrogenase (NAD+) NP_418065.1 3780665 R 83333 CDS NP_418066.1 16131480 948123 complement(3781684..3782151) 1 NC_000913.2 protein export; molecular chaperone; may bind to signel sequence; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; protein export chaperone 3782151 secB 948123 secB Escherichia coli K12 protein export chaperone NP_418066.1 3781684 R 83333 CDS NP_418067.1 16131481 948132 complement(3782214..3782465) 1 NC_000913.2 glutaredoxin 3 3782465 grxC 948132 grxC Escherichia coli K12 glutaredoxin 3 NP_418067.1 3782214 R 83333 CDS NP_418068.1 16131482 948131 complement(3782607..3783038) 1 NC_000913.2 predicted rhodanese-related sulfurtransferase 3783038 yibN 948131 yibN Escherichia coli K12 predicted rhodanese-related sulfurtransferase NP_418068.1 3782607 R 83333 CDS NP_418069.1 16131483 948130 3783283..3784827 1 NC_000913.2 putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; phosphoglycero mutase III, cofactor-independent 3784827 gpmM 948130 gpmM Escherichia coli K12 phosphoglycero mutase III, cofactor-independent NP_418069.1 3783283 D 83333 CDS NP_418070.6 162135913 948129 3784861..3786120 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; protease with a role in cell division 3786120 envC 948129 envC Escherichia coli K12 protease with a role in cell division NP_418070.6 3784861 D 83333 CDS NP_418071.4 90111621 948128 3786124..3787083 1 NC_000913.2 predicted polysaccharide deacetylase 3787083 yibQ 948128 yibQ Escherichia coli K12 predicted polysaccharide deacetylase NP_418071.4 3786124 D 83333 CDS NP_418072.1 16131486 948140 complement(3787070..3788104) 1 NC_000913.2 putative regulator; predicted glycosyl transferase 3788104 yibD 948140 yibD Escherichia coli K12 predicted glycosyl transferase NP_418072.1 3787070 R 83333 CDS NP_418073.1 16131487 948139 complement(3788343..3789368) 1 NC_000913.2 threonine dehydrogenase; GO_process: amino acid catabolic process [goid 0009063]; threonine 3-dehydrogenase, NAD(P)-binding 3789368 tdh 948139 tdh Escherichia coli K12 threonine 3-dehydrogenase, NAD(P)-binding NP_418073.1 3788343 R 83333 CDS NP_418074.1 16131488 948138 complement(3789378..3790574) 1 NC_000913.2 2-amino-3-ketobutyrate CoA ligase (glycine acetyltransferase); GO_process: amino acid catabolic process [goid 0009063]; glycine C-acetyltransferase 3790574 kbl 948138 kbl Escherichia coli K12 glycine C-acetyltransferase NP_418074.1 3789378 R 83333 CDS NP_418075.2 90111622 948137 complement(3790849..3791706) 1 NC_000913.2 involved in lipopolysaccharide biosynthesis; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide biosynthetic process [goid 0009103]; predicted protein 3791706 htrL 948137 htrL Escherichia coli K12 predicted protein NP_418075.2 3790849 R 83333 CDS NP_418076.1 16131490 948134 3792010..3792942 1 NC_000913.2 ADP-L-glycero-D-mannoheptose-6-epimerase; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: NAD biosynthetic process [goid 0009435]; ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding 3792942 rfaD 948134 rfaD Escherichia coli K12 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding NP_418076.1 3792010 D 83333 CDS NP_418077.1 16131491 948135 3792952..3793998 1 NC_000913.2 ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; ADP-heptose:LPS heptosyltransferase II 3793998 rfaF 948135 rfaF Escherichia coli K12 ADP-heptose:LPS heptosyltransferase II NP_418077.1 3792952 D 83333 CDS NP_418078.1 16131492 948136 3794002..3794961 1 NC_000913.2 heptosyl transferase I; lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; ADP-heptose:LPS heptosyl transferase I 3794961 rfaC 948136 rfaC Escherichia coli K12 ADP-heptose:LPS heptosyl transferase I NP_418078.1 3794002 D 83333 CDS NP_418079.1 16131493 948148 3794971..3796230 1 NC_000913.2 O-antigen ligase; lipopolysaccharide core biosynthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; O-antigen ligase 3796230 rfaL 948148 rfaL Escherichia coli K12 O-antigen ligase NP_418079.1 3794971 D 83333 CDS NP_418080.1 16131494 948147 complement(3796262..3797335) 1 NC_000913.2 probably hexose transferase; lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis 3797335 waaU 948147 waaU Escherichia coli K12 lipopolysaccharide core biosynthesis NP_418080.1 3796262 R 83333 CDS NP_418081.1 16131495 948146 complement(3797368..3798219) 1 NC_000913.2 lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein 3798219 rfaZ 948146 rfaZ Escherichia coli K12 lipopolysaccharide core biosynthesis protein NP_418081.1 3797368 R 83333 CDS NP_418082.1 16131496 948145 complement(3798290..3798988) 1 NC_000913.2 lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein 3798988 rfaY 948145 rfaY Escherichia coli K12 lipopolysaccharide core biosynthesis protein NP_418082.1 3798290 R 83333 CDS NP_418083.1 16131497 948142 complement(3799006..3800022) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase 3800022 rfaJ 948142 rfaJ Escherichia coli K12 UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase NP_418083.1 3799006 R 83333 CDS NP_418084.1 16131498 948143 complement(3800062..3801081) 1 NC_000913.2 UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase 3801081 rfaI 948143 rfaI Escherichia coli K12 UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase NP_418084.1 3800062 R 83333 CDS NP_418085.1 16131499 948144 complement(3801081..3802190) 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase 3802190 rfaB 948144 rfaB Escherichia coli K12 UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase NP_418085.1 3801081 R 83333 CDS NP_418086.1 16131500 948151 complement(3802204..3803139) 1 NC_000913.2 lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein 3803139 rfaS 948151 rfaS Escherichia coli K12 lipopolysaccharide core biosynthesis protein NP_418086.1 3802204 R 83333 CDS NP_418087.1 16131501 948150 complement(3803176..3803973) 1 NC_000913.2 lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS co; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; kinase that phosphorylates core heptose of lipopolysaccharide 3803973 rfaP 948150 rfaP Escherichia coli K12 kinase that phosphorylates core heptose of lipopolysaccharide NP_418087.1 3803176 R 83333 CDS NP_418088.1 16131502 948149 complement(3803966..3805090) 1 NC_000913.2 glucosyltransferase I; lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: SOS response [goid 0009432]; glucosyltransferase I 3805090 rfaG 948149 rfaG Escherichia coli K12 glucosyltransferase I NP_418088.1 3803966 R 83333 CDS NP_418089.1 16131503 948155 complement(3805087..3806121) 1 NC_000913.2 lipopolysaccharide core biosynthesis; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; lipopolysaccharide core biosynthesis protein 3806121 rfaQ 948155 rfaQ Escherichia coli K12 lipopolysaccharide core biosynthesis protein NP_418089.1 3805087 R 83333 CDS NP_418090.1 16131504 949048 3806563..3807840 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipid A biosynthetic process [goid 0009245]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: K antigen biosynthetic process [goid 0009248]; 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) 3807840 waaA 949048 waaA Escherichia coli K12 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) NP_418090.1 3806563 D 83333 CDS NP_418091.1 16131505 947386 3807848..3808327 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; pantetheine-phosphate adenylyltransferase 3808327 coaD 947386 coaD Escherichia coli K12 pantetheine-phosphate adenylyltransferase NP_418091.1 3807848 D 83333 CDS NP_418092.1 16131506 946765 complement(3808366..3809175) 1 NC_000913.2 formamidopyrimidine DNA glycosylase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 3809175 mutM 946765 mutM Escherichia coli K12 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase NP_418092.1 3808366 R 83333 CDS NP_418093.1 16131507 946318 complement(3809273..3809440) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L33 3809440 rpmG 946318 rpmG Escherichia coli K12 50S ribosomal subunit protein L33 NP_418093.1 3809273 R 83333 CDS NP_418094.1 16131508 946941 complement(3809461..3809697) 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L28 3809697 rpmB 946941 rpmB Escherichia coli K12 50S ribosomal subunit protein L28 NP_418094.1 3809461 R 83333 CDS NP_418095.4 162135914 948968 complement(3809914..3810582) 1 NC_000913.2 DNA repair protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; protein associated with replication fork, possible DNA repair protein 3810582 yicR 948968 yicR Escherichia coli K12 protein associated with replication fork, possible DNA repair protein NP_418095.4 3809914 R 83333 CDS NP_418096.4 90111624 949047 3810754..3811974 1 NC_000913.2 flavoprotein affecting synthesis of DNA and pantothenate metabolism; GO_component: cytoplasm [goid 0005737]; GO_process: coenzyme A biosynthetic process [goid 0015937]; GO_process: DNA-dependent DNA replication [goid 0006261]; fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding 3811974 dfp 949047 dfp Escherichia coli K12 fused 4'-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN-binding NP_418096.4 3810754 D 83333 CDS NP_418097.1 16131511 948607 3811955..3812410 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; deoxyuridinetriphosphatase 3812410 dut 948607 dut Escherichia coli K12 deoxyuridinetriphosphatase NP_418097.1 3811955 D 83333 CDS NP_418098.4 90111625 948158 3812517..3813113 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; division inhibitor 3813113 slmA 948158 slmA Escherichia coli K12 division inhibitor NP_418098.4 3812517 D 83333 CDS NP_418099.1 16131513 948157 complement(3813150..3813791) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; orotate phosphoribosyltransferase 3813791 pyrE 948157 pyrE Escherichia coli K12 orotate phosphoribosyltransferase NP_418099.1 3813150 R 83333 CDS YP_001491547.1 157783152 948156 complement(3813886..3814572) 1 NC_000913.2 defective ribonuclease PH; enzyme; degradation of RNA; RNase PH; MG1655 has the rph-1 C-terminal frameshift mutation caused by a one base pair deletion of a G of the first base of codon 223 that severely reduces Rph activity; rph-1 mutation is polar on the downstream pyrE gene, reducing PyrE activity and causing partial pyrimidine starvation when grown in minimal medium; this mutant ribonuclease PH is shorter (228 aa) and has a C-terminal sequence of ESNPL replacing GIESIVATQKAALAN; GO_process: RNA catabolic process [goid 0006401]; defective ribonuclease PH 3814572 rph 948156 rph Escherichia coli K12 defective ribonuclease PH YP_001491547.1 3813886 R 83333 CDS NP_418101.1 16131515 948154 3814699..3815562 1 NC_000913.2 putative alpha helix protein; conserved protein 3815562 yicC 948154 yicC Escherichia coli K12 conserved protein NP_418101.1 3814699 D 83333 CDS NP_418102.2 90111626 948153 3815783..3816607 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; DNA-damage-inducible protein 3816607 dinD 948153 dinD Escherichia coli K12 DNA-damage-inducible protein NP_418102.2 3815783 D 83333 CDS NP_418103.4 90111627 948165 3816897..3817514 1 NC_000913.2 conserved inner membrane protein 3817514 yicG 948165 yicG Escherichia coli K12 conserved inner membrane protein NP_418103.4 3816897 D 83333 CDS NP_418104.2 90111628 948164 complement(3817511..3819193) 1 NC_000913.2 putative enzyme; GO_process: DNA metabolic process [goid 0006259]; DNA ligase, NAD(+)-dependent 3819193 ligB 948164 ligB Escherichia coli K12 DNA ligase, NAD(+)-dependent NP_418104.2 3817511 R 83333 CDS NP_418105.1 16131519 948163 3819451..3820074 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: purine ribonucleotide biosynthetic process [goid 0009152]; guanylate kinase 3820074 gmk 948163 gmk Escherichia coli K12 guanylate kinase NP_418105.1 3819451 D 83333 CDS NP_418106.1 16131520 948160 3820129..3820404 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, omega subunit 3820404 rpoZ 948160 rpoZ Escherichia coli K12 RNA polymerase, omega subunit NP_418106.1 3820129 D 83333 CDS NP_418107.1 16131521 948159 3820423..3822531 1 NC_000913.2 (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: response to starvation [goid 0042594]; bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3822531 spoT 948159 spoT Escherichia coli K12 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase NP_418107.1 3820423 D 83333 CDS NP_418108.1 16131522 948161 3822538..3823227 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; tRNA (Guanosine-2'-O-)-methyltransferase 3823227 trmH 948161 trmH Escherichia coli K12 tRNA (Guanosine-2'-O-)-methyltransferase NP_418108.1 3822538 D 83333 CDS NP_418109.1 16131523 948162 3823233..3825314 1 NC_000913.2 DNA helicase, resolution of Holliday junctions, branch migration; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; ATP-dependent DNA helicase 3825314 recG 948162 recG Escherichia coli K12 ATP-dependent DNA helicase NP_418109.1 3823233 D 83333 CDS NP_418110.1 16131524 948166 complement(3825483..3826688) 1 NC_000913.2 glutamate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate transporter 3826688 gltS 948166 gltS Escherichia coli K12 glutamate transporter NP_418110.1 3825483 R 83333 CDS NP_418111.1 16131525 948172 3826968..3828359 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3828359 yicE 948172 yicE Escherichia coli K12 predicted transporter NP_418111.1 3826968 D 83333 CDS NP_418112.1 16131526 948171 3828480..3830189 1 NC_000913.2 conserved protein 3830189 yicH 948171 yicH Escherichia coli K12 conserved protein NP_418112.1 3828480 D 83333 CDS NP_418113.1 16131527 948169 complement(3830242..3832560) 1 NC_000913.2 predicted alpha-glucosidase 3832560 yicI 948169 yicI Escherichia coli K12 predicted alpha-glucosidase NP_418113.1 3830242 R 83333 CDS NP_418114.4 90111629 948168 complement(3832570..3833952) 1 NC_000913.2 putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3833952 yicJ 948168 yicJ Escherichia coli K12 predicted transporter NP_418114.4 3832570 R 83333 CDS b4653 5625579 3834448..3834579 1 NC_000913.2 pseudogene; 3834579 yicT 5625579 yicT Escherichia coli K12 3834448 D 83333 CDS NP_418115.1 16131529 948177 3834976..3836160 1 NC_000913.2 two-module transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar efflux system 3836160 setC 948177 setC Escherichia coli K12 predicted sugar efflux system NP_418115.1 3834976 D 83333 CDS NP_418116.1 16131530 948176 3836271..3837194 1 NC_000913.2 putative permease transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted inner membrane protein 3837194 yicL 948176 yicL Escherichia coli K12 predicted inner membrane protein NP_418116.1 3836271 D 83333 CDS NP_418117.1 16131531 948175 complement(3837198..3838016) 1 NC_000913.2 lipoprotein-28; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cytoplasmic membrane lipoprotein-28 3838016 nlpA 948175 nlpA Escherichia coli K12 cytoplasmic membrane lipoprotein-28 NP_418117.1 3837198 R 83333 CDS YP_588471.1 94541128 1450300 3838238..3838531 1 NC_000913.2 predicted protein 3838531 yicS 1450300 yicS Escherichia coli K12 predicted protein YP_588471.1 3838238 D 83333 CDS NP_418118.2 145698327 948213 complement(3838572..3839762) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3839762 nepI 948213 nepI Escherichia coli K12 predicted transporter NP_418118.2 3838572 R 83333 CDS NP_418119.2 90111630 948173 complement(3839973..3840425) 1 NC_000913.2 conserved protein 3840425 yicN 948173 yicN Escherichia coli K12 conserved protein NP_418119.2 3839973 R 83333 CDS NP_418120.2 90111631 948174 complement(3840478..3841812) 1 NC_000913.2 predicted xanthine/uracil permase 3841812 yicO 948174 yicO Escherichia coli K12 predicted xanthine/uracil permase NP_418120.2 3840478 R 83333 CDS NP_418121.1 16131535 948210 3841987..3843753 1 NC_000913.2 GO_process: metabolic process [goid 0008152]; cryptic adenine deaminase 3843753 ade 948210 ade Escherichia coli K12 cryptic adenine deaminase NP_418121.1 3841987 D 83333 CDS NP_418122.1 16131536 948201 complement(3843799..3845190) 1 NC_000913.2 hexose phosphate transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; hexose phosphate transporter 3845190 uhpT 948201 uhpT Escherichia coli K12 hexose phosphate transporter NP_418122.1 3843799 R 83333 CDS NP_418123.2 90111632 948184 complement(3845328..3846647) 1 NC_000913.2 regulator of uhpT; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; membrane protein regulates uhpT expression 3846647 uhpC 948184 uhpC Escherichia coli K12 membrane protein regulates uhpT expression NP_418123.2 3845328 R 83333 CDS NP_418124.4 90111633 948195 complement(3846657..3848159) 1 NC_000913.2 sensor histidine protein kinase phosphorylates UhpA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory sytem with UhpA 3848159 uhpB 948195 uhpB Escherichia coli K12 sensory histidine kinase in two-component regulatory sytem with UhpA NP_418124.4 3846657 R 83333 CDS NP_418125.1 16131539 948178 complement(3848159..3848749) 1 NC_000913.2 response regulator, positive activator of uhpT transcription (sensor, uhpB); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system wtih UhpB 3848749 uhpA 948178 uhpA Escherichia coli K12 DNA-binding response regulator in two-component regulatory system wtih UhpB NP_418125.1 3848159 R 83333 CDS NP_418126.1 16131540 948183 complement(3848825..3849115) 1 NC_000913.2 acetolactate synthase I, valine sensitive, small subunit; acetolactate synthase I, small subunit 3849115 ilvN 948183 ilvN Escherichia coli K12 acetolactate synthase I, small subunit NP_418126.1 3848825 R 83333 CDS NP_418127.1 16131541 948182 complement(3849119..3850807) 1 NC_000913.2 acetolactate synthase I,valine-sensitive, large subunit; acetolactate synthase I, large subunit 3850807 ilvB 948182 ilvB Escherichia coli K12 acetolactate synthase I, large subunit NP_418127.1 3849119 R 83333 CDS NP_418128.1 16131542 948181 complement(3850913..3851011) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; ilvB operon leader peptide 3851011 ivbL 948181 ivbL Escherichia coli K12 ilvB operon leader peptide NP_418128.1 3850913 R 83333 CDS YP_001165330.1 145698328 5061526 3851466..3851579 1 NC_000913.2 lexA-regulated predicted protein 3851579 tisA 5061526 tisA Escherichia coli K12 lexA-regulated predicted protein YP_001165330.1 3851466 D 83333 CDS YP_001165331.1 145698329 5061527 3851576..3851665 1 NC_000913.2 lexA-regulated toxic peptide 3851665 tisB 5061527 tisB Escherichia coli K12 lexA-regulated toxic peptide YP_001165331.1 3851576 D 83333 CDS NP_418129.2 90111634 948180 3851945..3853129 1 NC_000913.2 2-module integral membrane pump; multidrug resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to drug [goid 0042493]; multidrug efflux system protein 3853129 emrD 948180 emrD Escherichia coli K12 multidrug efflux system protein NP_418129.2 3851945 D 83333 CDS NP_418130.1 16131544 948179 complement(3853137..3853634) 1 NC_000913.2 putative transcriptional regulator; predicted DNA-binding transcriptional regulator 3853634 yidF 948179 yidF Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418130.1 3853137 R 83333 CDS NP_418131.1 16131545 948191 complement(3853631..3853993) 1 NC_000913.2 predicted inner membrane protein 3853993 yidG 948191 yidG Escherichia coli K12 predicted inner membrane protein NP_418131.1 3853631 R 83333 CDS NP_418132.1 16131546 948190 complement(3853983..3854330) 1 NC_000913.2 conserved inner membrane protein 3854330 yidH 948190 yidH Escherichia coli K12 conserved inner membrane protein NP_418132.1 3853983 R 83333 CDS NP_418133.1 16131547 948189 3854438..3854887 1 NC_000913.2 predicted inner membrane protein 3854887 yidI 948189 yidI Escherichia coli K12 predicted inner membrane protein NP_418133.1 3854438 D 83333 CDS NP_418134.1 16131548 948188 complement(3854934..3856427) 1 NC_000913.2 putative sulfatase; GO_process: sulfur metabolic process [goid 0006790]; predicted sulfatase/phosphatase 3856427 yidJ 948188 yidJ Escherichia coli K12 predicted sulfatase/phosphatase NP_418134.1 3854934 R 83333 CDS NP_418135.1 16131549 948185 complement(3856424..3858139) 1 NC_000913.2 putative cotransporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3858139 yidK 948185 yidK Escherichia coli K12 predicted transporter NP_418135.1 3856424 R 83333 CDS NP_418136.1 16131550 948186 3858276..3859199 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3859199 yidL 948186 yidL Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418136.1 3858276 D 83333 CDS b4556 1450301 complement(3859196..3860010) 1 NC_000913.2 predicted protein (pseudogene) probable 6-phospho-beta-glucosidase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; 3860010 glvG 1450301 glvG Escherichia coli K12 3859196 R 83333 CDS b3683 2847721 complement(3860010..3861626) 1 NC_000913.2 arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols PTS system, arbutin-like IIB component PTS system, arbutin-like IIC component; 3861626 glvC 2847721 glvC Escherichia coli K12 3860010 R 83333 CDS NP_418139.1 16131552 948194 3861922..3862638 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3862638 yidP 948194 yidP Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418139.1 3861922 D 83333 CDS NP_418140.4 90111636 948193 complement(3862635..3864296) 1 NC_000913.2 putative transport protein; predicted transporter 3864296 yidE 948193 yidE Escherichia coli K12 predicted transporter NP_418140.4 3862635 R 83333 CDS NP_418141.2 90111637 948192 complement(3864492..3864920) 1 NC_000913.2 heat shock protein; GO_process: response to temperature stimulus [goid 0009266]; heat shock chaperone 3864920 ibpB 948192 ibpB Escherichia coli K12 heat shock chaperone NP_418141.2 3864492 R 83333 CDS NP_418142.1 16131555 948200 complement(3865032..3865445) 1 NC_000913.2 heat shock protein; GO_process: response to temperature stimulus [goid 0009266]; heat shock chaperone 3865445 ibpA 948200 ibpA Escherichia coli K12 heat shock chaperone NP_418142.1 3865032 R 83333 CDS NP_418143.2 90111638 948199 3865751..3866083 1 NC_000913.2 conserved outer membrane protein 3866083 yidQ 948199 yidQ Escherichia coli K12 conserved outer membrane protein NP_418143.2 3865751 D 83333 CDS NP_418144.2 90111639 948198 complement(3866085..3867299) 1 NC_000913.2 conserved protein 3867299 yidR 948198 yidR Escherichia coli K12 conserved protein NP_418144.2 3866085 R 83333 CDS NP_418145.2 90111640 948197 3867400..3868464 1 NC_000913.2 predicted oxidoreductase with FAD/NAD(P)-binding domain 3868464 cbrA 948197 cbrA Escherichia coli K12 predicted oxidoreductase with FAD/NAD(P)-binding domain NP_418145.2 3867400 D 83333 CDS NP_418146.4 90111641 948196 complement(3868461..3869753) 1 NC_000913.2 D-galactonate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-galactonate transporter 3869753 dgoT 948196 dgoT Escherichia coli K12 D-galactonate transporter NP_418146.4 3868461 R 83333 CDS YP_026237.1 49176390 2847765 complement(3869873..3871021) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; galactonate dehydratase 3871021 dgoD 2847765 dgoD Escherichia coli K12 galactonate dehydratase YP_026237.1 3869873 R 83333 CDS YP_026238.1 49176391 2847766 complement(3871018..3871635) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; 2-oxo-3-deoxygalactonate 6-phosphate aldolase 3871635 dgoA 2847766 dgoA Escherichia coli K12 2-oxo-3-deoxygalactonate 6-phosphate aldolase YP_026238.1 3871018 R 83333 CDS NP_418148.1 16131561 948207 complement(3871619..3872497) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; 2-oxo-3-deoxygalactonate kinase 3872497 dgoK 948207 dgoK Escherichia coli K12 2-oxo-3-deoxygalactonate kinase NP_418148.1 3871619 R 83333 CDS YP_026239.1 49176392 2847767 complement(3872494..3873183) 1 NC_000913.2 transcriptional repressor for galactonate utilization (GntR family); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3873183 dgoR 2847767 dgoR Escherichia coli K12 predicted DNA-binding transcriptional regulator YP_026239.1 3872494 R 83333 CDS YP_026240.1 49176393 948202 3873461..3874117 1 NC_000913.2 putative replicase EC 2.7.-; predicted lipoproteinC 3874117 yidX 948202 yidX Escherichia coli K12 predicted lipoproteinC YP_026240.1 3873461 D 83333 CDS NP_418152.1 16131565 948204 complement(3874163..3874975) 1 NC_000913.2 predicted hydrolase 3874975 yidA 948204 yidA Escherichia coli K12 predicted hydrolase NP_418152.1 3874163 R 83333 CDS NP_418153.4 90111642 948212 complement(3875090..3875488) 1 NC_000913.2 conserved protein 3875488 yidB 948212 yidB Escherichia coli K12 conserved protein NP_418153.4 3875090 R 83333 CDS YP_026241.1 49176395 948211 complement(3875728..3878142) 1 NC_000913.2 DNA gyrase subunit B, type II topoisomerase, ATPase activity; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA gyrase, subunit B 3878142 gyrB 948211 gyrB Escherichia coli K12 DNA gyrase, subunit B YP_026241.1 3875728 R 83333 CDS NP_418155.1 16131568 948209 complement(3878171..3879244) 1 NC_000913.2 ssDNA and dsDNA binding, ATP binding; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; gap repair protein 3879244 recF 948209 recF Escherichia coli K12 gap repair protein NP_418155.1 3878171 R 83333 CDS NP_418156.1 16131569 948218 complement(3879244..3880344) 1 NC_000913.2 DNA polymerase III, beta-subunit; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, beta subunit 3880344 dnaN 948218 dnaN Escherichia coli K12 DNA polymerase III, beta subunit NP_418156.1 3879244 R 83333 CDS NP_418157.1 16131570 948217 complement(3880349..3881752) 1 NC_000913.2 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator 3881752 dnaA 948217 dnaA Escherichia coli K12 chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator NP_418157.1 3880349 R 83333 CDS NP_418158.1 16131571 948216 3882359..3882499 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L34 3882499 rpmH 948216 rpmH Escherichia coli K12 50S ribosomal subunit protein L34 NP_418158.1 3882359 D 83333 CDS NP_418159.1 16131572 948215 3882516..3882875 1 NC_000913.2 RNase P, protein component; protein C5 RNase P is an essential enzyme responsible for the processing of the 5' ends of precursors to tRNA and other naturally occurring stable RNA molecules RNase P also affects gene expression of polycistronic operon mRNAs; GO_component: cytoplasm [goid 0005737]; GO_process: RNA catabolic process [goid 0006401]; GO_process: RNA modification [goid 0009451]; protein C5 component of RNase P 3882875 rnpA 948215 rnpA Escherichia coli K12 protein C5 component of RNase P NP_418159.1 3882516 D 83333 CDS YP_588472.1 94541129 1450303 3882839..3883096 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted protein 3883096 yidD 1450303 yidD Escherichia coli K12 predicted protein YP_588472.1 3882839 D 83333 CDS NP_418161.1 16131573 948214 3883099..3884745 1 NC_000913.2 60 KD inner-membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; cytoplasmic insertase into membrane protein, Sec system 3884745 yidC 948214 yidC Escherichia coli K12 cytoplasmic insertase into membrane protein, Sec system NP_418161.1 3883099 D 83333 CDS NP_418162.1 16131574 948222 3884851..3886215 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; GO_process: xenobiotic metabolic process [goid 0006805]; GTPase 3886215 mnmE 948222 mnmE Escherichia coli K12 GTPase NP_418162.1 3884851 D 83333 CDS NP_418163.1 16131575 948223 3886458..3886532 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; tryptophanase leader peptide 3886532 tnaC 948223 tnaC Escherichia coli K12 tryptophanase leader peptide NP_418163.1 3886458 D 83333 CDS NP_418164.4 90111643 948221 3886753..3888168 1 NC_000913.2 tryptophanase; GO_process: amino acid catabolic process [goid 0009063]; tryptophanase/L-cysteine desulfhydrase, PLP-dependent 3888168 tnaA 948221 tnaA Escherichia coli K12 tryptophanase/L-cysteine desulfhydrase, PLP-dependent NP_418164.4 3886753 D 83333 CDS NP_418165.1 16131577 948220 3888259..3889506 1 NC_000913.2 low affinity tryptophan permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: tryptophan biosynthetic process [goid 0000162]; tryptophan transporter of low affinity 3889506 tnaB 948220 tnaB Escherichia coli K12 tryptophan transporter of low affinity NP_418165.1 3888259 D 83333 CDS NP_418166.1 16131578 948219 3889638..3890813 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 3890813 mdtL 948219 mdtL Escherichia coli K12 multidrug efflux system protein NP_418166.1 3889638 D 83333 CDS NP_418167.1 16131579 948227 3890788..3891747 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 3891747 yidZ 948227 yidZ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418167.1 3890788 D 83333 CDS NP_418168.1 16131580 948226 3891892..3892653 1 NC_000913.2 predicted phosphopantetheinyl transferase 3892653 yieE 948226 yieE Escherichia coli K12 predicted phosphopantetheinyl transferase NP_418168.1 3891892 D 83333 CDS NP_418169.1 16131581 948225 3892675..3893241 1 NC_000913.2 chromate reductase, Class I, flavoprotein 3893241 yieF 948225 yieF Escherichia coli K12 chromate reductase, Class I, flavoprotein NP_418169.1 3892675 D 83333 CDS NP_418170.1 16131582 948224 complement(3893295..3894632) 1 NC_000913.2 putative membrane / transport protein; predicted inner membrane protein 3894632 yieG 948224 yieG Escherichia coli K12 predicted inner membrane protein NP_418170.1 3893295 R 83333 CDS NP_418171.1 16131583 948232 3894797..3895462 1 NC_000913.2 putative phosphatase; predicted hydrolase 3895462 yieH 948232 yieH Escherichia coli K12 predicted hydrolase NP_418171.1 3894797 D 83333 CDS NP_418172.1 16131584 948231 3895529..3895996 1 NC_000913.2 predicted inner membrane protein 3895996 cbrB 948231 cbrB Escherichia coli K12 predicted inner membrane protein NP_418172.1 3895529 D 83333 CDS NP_418173.1 16131585 948230 3896045..3896632 1 NC_000913.2 conserved protein 3896632 cbrC 948230 cbrC Escherichia coli K12 conserved protein NP_418173.1 3896045 D 83333 CDS YP_026242.1 49176397 948229 complement(3896694..3897416) 1 NC_000913.2 pyrimidine-specific nucleoside hydrolase; predicted 6-phosphogluconolactonase 3897416 yieK 948229 yieK Escherichia coli K12 predicted 6-phosphogluconolactonase YP_026242.1 3896694 R 83333 CDS NP_418175.3 145698330 948272 complement(3897431..3898600) 1 NC_000913.2 putative xylanase; GO_process: carbohydrate catabolic process [goid 0016052]; predicted xylanase 3898600 yieL 948272 yieL Escherichia coli K12 predicted xylanase NP_418175.3 3897431 R 83333 CDS NP_418176.1 16131588 948228 complement(3898627..3900243) 1 NC_000913.2 putative receptor protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; carbohydrate-specific outer membrane porin, cryptic 3900243 bglH 948228 bglH Escherichia coli K12 carbohydrate-specific outer membrane porin, cryptic NP_418176.1 3898627 R 83333 CDS NP_418177.1 16131589 948234 complement(3900312..3901724) 1 NC_000913.2 phospho-beta-glucosidase B; cryptic; GO_process: carbohydrate catabolic process [goid 0016052]; cryptic phospho-beta-glucosidase B 3901724 bglB 948234 bglB Escherichia coli K12 cryptic phospho-beta-glucosidase B NP_418177.1 3900312 R 83333 CDS NP_418178.1 16131590 948236 complement(3901743..3903620) 1 NC_000913.2 PTS system beta-glucosides, enzyme II, cryptic; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein modification [goid 0006464]; fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component 3903620 bglF 948236 bglF Escherichia coli K12 fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component NP_418178.1 3901743 R 83333 CDS NP_418179.1 16131591 948235 complement(3903754..3904590) 1 NC_000913.2 positive regulation of bgl operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; transcriptional antiterminator of the bgl operon 3904590 bglG 948235 bglG Escherichia coli K12 transcriptional antiterminator of the bgl operon NP_418179.1 3903754 R 83333 CDS NP_418180.1 16131592 948233 complement(3904876..3905601) 1 NC_000913.2 negative regulator for pho regulon and putative enzyme in phosphate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; negative regulator of PhoR/PhoB two-component regulator 3905601 phoU 948233 phoU Escherichia coli K12 negative regulator of PhoR/PhoB two-component regulator NP_418180.1 3904876 R 83333 CDS NP_418181.1 16131593 948240 complement(3905616..3906389) 1 NC_000913.2 ATP-binding component of high-affinity phosphate-specific transport system; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit 3906389 pstB 948240 pstB Escherichia coli K12 phosphate transporter subunit NP_418181.1 3905616 R 83333 CDS NP_418182.1 16131594 948239 complement(3906572..3907462) 1 NC_000913.2 high-affinity phosphate-specific transport system; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit 3907462 pstA 948239 pstA Escherichia coli K12 phosphate transporter subunit NP_418182.1 3906572 R 83333 CDS NP_418183.1 16131595 948238 complement(3907462..3908421) 1 NC_000913.2 high-affinity phosphate-specific transport system, cytoplasmic membrane component; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit 3908421 pstC 948238 pstC Escherichia coli K12 phosphate transporter subunit NP_418183.1 3907462 R 83333 CDS NP_418184.1 16131596 948237 complement(3908508..3909548) 1 NC_000913.2 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; phosphate transporter subunit 3909548 pstS 948237 pstS Escherichia coli K12 phosphate transporter subunit NP_418184.1 3908508 R 83333 CDS NP_418185.1 16131597 948241 complement(3909862..3911691) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: amino sugar biosynthetic process [goid 0046349]; L-glutamine:D-fructose-6-phosphate aminotransferase 3911691 glmS 948241 glmS Escherichia coli K12 L-glutamine:D-fructose-6-phosphate aminotransferase NP_418185.1 3909862 R 83333 CDS NP_418186.1 16131598 948246 complement(3911853..3913223) 1 NC_000913.2 N-acetyl glucosamine-1-phosphate uridyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; GO_process: amine catabolic process [goid 0009310]; fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase 3913223 glmU 948246 glmU Escherichia coli K12 fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase NP_418186.1 3911853 R 83333 CDS NP_418187.1 16131599 948245 complement(3913576..3913995) 1 NC_000913.2 membrane-bound ATP synthase, F1 sector, epsilon-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, epsilon subunit 3913995 atpC 948245 atpC Escherichia coli K12 F1 sector of membrane-bound ATP synthase, epsilon subunit NP_418187.1 3913576 R 83333 CDS NP_418188.1 16131600 948244 complement(3914016..3915398) 1 NC_000913.2 membrane-bound ATP synthase, F1 sector, beta-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, beta subunit 3915398 atpD 948244 atpD Escherichia coli K12 F1 sector of membrane-bound ATP synthase, beta subunit NP_418188.1 3914016 R 83333 CDS NP_418189.1 16131601 948243 complement(3915425..3916288) 1 NC_000913.2 membrane-bound ATP synthase, F1 sector, gamma-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, gamma subunit 3916288 atpG 948243 atpG Escherichia coli K12 F1 sector of membrane-bound ATP synthase, gamma subunit NP_418189.1 3915425 R 83333 CDS NP_418190.1 16131602 948242 complement(3916339..3917880) 1 NC_000913.2 membrane-bound ATP synthase, F1 sector, alpha-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, alpha subunit 3917880 atpA 948242 atpA Escherichia coli K12 F1 sector of membrane-bound ATP synthase, alpha subunit NP_418190.1 3916339 R 83333 CDS NP_418191.1 16131603 948254 complement(3917893..3918426) 1 NC_000913.2 membrane-bound ATP synthase, F1 sector, delta-subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F1 sector of membrane-bound ATP synthase, delta subunit 3918426 atpH 948254 atpH Escherichia coli K12 F1 sector of membrane-bound ATP synthase, delta subunit NP_418191.1 3917893 R 83333 CDS NP_418192.1 16131604 948247 complement(3918441..3918911) 1 NC_000913.2 membrane-bound ATP synthase, F0 sector, subunit b; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F0 sector of membrane-bound ATP synthase, subunit b 3918911 atpF 948247 atpF Escherichia coli K12 F0 sector of membrane-bound ATP synthase, subunit b NP_418192.1 3918441 R 83333 CDS NP_418193.1 16131605 948253 complement(3918973..3919212) 1 NC_000913.2 membrane-bound ATP synthase, F0 sector, subunit c; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; F0 sector of membrane-bound ATP synthase, subunit c 3919212 atpE 948253 atpE Escherichia coli K12 F0 sector of membrane-bound ATP synthase, subunit c NP_418193.1 3918973 R 83333 CDS NP_418194.1 16131606 948252 complement(3919259..3920074) 1 NC_000913.2 membrane-bound ATP synthase, F0 sector, subunit a; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; GO_process: protein folding [goid 0006457]; F0 sector of membrane-bound ATP synthase, subunit a 3920074 atpB 948252 atpB Escherichia coli K12 F0 sector of membrane-bound ATP synthase, subunit a NP_418194.1 3919259 R 83333 CDS NP_418195.2 90111645 948251 complement(3920083..3920463) 1 NC_000913.2 membrane-bound ATP synthase, dispensable protein, affects expression of atpB; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; ATP synthase, membrane-bound accesory subunit 3920463 atpI 948251 atpI Escherichia coli K12 ATP synthase, membrane-bound accesory subunit NP_418195.2 3920083 R 83333 CDS NP_418196.1 16131608 948250 complement(3921080..3921703) 1 NC_000913.2 glucose-inhibited division; chromosome replication?; methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein 3921703 gidB 948250 gidB Escherichia coli K12 methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein NP_418196.1 3921080 R 83333 CDS NP_418197.1 16131609 948248 complement(3921767..3923656) 1 NC_000913.2 glucose-inhibited division; chromosome replication?; glucose-inhibited cell-division protein 3923656 mnmG 948248 mnmG Escherichia coli K12 glucose-inhibited cell-division protein NP_418197.1 3921767 R 83333 CDS NP_418198.1 16131610 948249 complement(3924035..3924478) 1 NC_000913.2 initiation of chromosome replication; GO_process: DNA-dependent DNA replication [goid 0006261]; FMN-binding protein MioC 3924478 mioC 948249 mioC Escherichia coli K12 FMN-binding protein MioC NP_418198.1 3924035 R 83333 CDS NP_418199.1 16131611 948259 complement(3924568..3925026) 1 NC_000913.2 regulator for asnA, asnC and gidA; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: asparagine biosynthetic process [goid 0006529]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3925026 asnC 948259 asnC Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418199.1 3924568 R 83333 CDS NP_418200.1 16131612 948258 3925178..3926170 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: asparagine biosynthetic process [goid 0006529]; asparagine synthetase A 3926170 asnA 948258 asnA Escherichia coli K12 asparagine synthetase A NP_418200.1 3925178 D 83333 CDS YP_026243.1 49176398 948257 complement(3926175..3927626) 1 NC_000913.2 predicted von Willibrand factor containing protein 3927626 viaA 948257 viaA Escherichia coli K12 predicted von Willibrand factor containing protein YP_026243.1 3926175 R 83333 CDS NP_418202.4 90111646 948256 complement(3927620..3929116) 1 NC_000913.2 putative 2-component regulator; fused predicted transcriptional regulator: sigma54 activator protein/conserved protein 3929116 ravA 948256 ravA Escherichia coli K12 fused predicted transcriptional regulator: sigma54 activator protein/conserved protein NP_418202.4 3927620 R 83333 CDS YP_026244.1 49176400 948255 3929339..3931207 1 NC_000913.2 low affinity potassium transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: response to osmotic stress [goid 0006970]; potassium transporter 3931207 kup 948255 kup Escherichia coli K12 potassium transporter YP_026244.1 3929339 D 83333 CDS NP_418204.2 90111647 948267 3931374..3931793 1 NC_000913.2 D-ribose high-affinity transport system; membrane-associated protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; predicted cytoplasmic sugar-binding protein 3931793 rbsD 948267 rbsD Escherichia coli K12 predicted cytoplasmic sugar-binding protein NP_418204.2 3931374 D 83333 CDS NP_418205.1 16131617 948264 3931801..3933306 1 NC_000913.2 ATP-binding component of D-ribose high-affinity transport system; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused D-ribose transporter subunits of ABC superfamily: ATP-binding components 3933306 rbsA 948264 rbsA Escherichia coli K12 fused D-ribose transporter subunits of ABC superfamily: ATP-binding components NP_418205.1 3931801 D 83333 CDS NP_418206.1 16131618 948262 3933311..3934276 1 NC_000913.2 D-ribose high-affinity transport system; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-ribose transporter subunit 3934276 rbsC 948262 rbsC Escherichia coli K12 D-ribose transporter subunit NP_418206.1 3933311 D 83333 CDS NP_418207.1 16131619 948261 3934301..3935191 1 NC_000913.2 D-ribose periplasmic binding protein; periplasmic-binding compoent of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; D-ribose transporter subunit 3935191 rbsB 948261 rbsB Escherichia coli K12 D-ribose transporter subunit NP_418207.1 3934301 D 83333 CDS NP_418208.1 16131620 948260 3935317..3936246 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; ribokinase 3936246 rbsK 948260 rbsK Escherichia coli K12 ribokinase NP_418208.1 3935317 D 83333 CDS NP_418209.1 16131621 948266 3936250..3937242 1 NC_000913.2 regulator for rbs operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor of ribose metabolism 3937242 rbsR 948266 rbsR Escherichia coli K12 DNA-binding transcriptional repressor of ribose metabolism NP_418209.1 3936250 D 83333 CDS NP_418210.1 16131622 948265 complement(3937208..3938635) 1 NC_000913.2 putative transport protein (MFS family) high copy suppressor of RspA: relieves RspA-mediated reduction of sigma(S) levels; overexpression also reduces MetE activity; effect proposed to be via an elevation in levels of homocysteine, causing a concomitant increase in homocysteine thiolactone overexpression has no effect on resistance to a variety of toxic compounds overexpression has no effect on resistance to a variety of toxic compounds; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted multidrug or homocysteine efflux system 3938635 hsrA 948265 hsrA Escherichia coli K12 predicted multidrug or homocysteine efflux system NP_418210.1 3937208 R 83333 CDS YP_026245.1 49176401 948263 complement(3938658..3939350) 1 NC_000913.2 predicted transcriptional regulator 3939350 yieP 948263 yieP Escherichia coli K12 predicted transcriptional regulator YP_026245.1 3938658 R 83333 CDS YP_026246.1 49176402 2847698 complement(3945151..3945990) 1 NC_000913.2 transcriptional regulator of the flhDC operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional regulator 3945990 hdfR 2847698 hdfR Escherichia coli K12 DNA-binding transcriptional regulator YP_026246.1 3945151 R 83333 CDS NP_418213.1 16131624 948274 3946109..3946447 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; conserved protein 3946447 yifE 948274 yifE Escherichia coli K12 conserved protein NP_418213.1 3946109 D 83333 CDS NP_418214.2 145698331 948282 complement(3946472..3947992) 1 NC_000913.2 putative 2-component regulator; predicted bifunctional enzyme and transcriptional regulator 3947992 yifB 948282 yifB Escherichia coli K12 predicted bifunctional enzyme and transcriptional regulator NP_418214.2 3946472 R 83333 CDS NP_418215.1 16131626 948283 3948345..3948443 1 NC_000913.2 ilvGEDA operon leader peptide; GO_component: cytoplasm [goid 0005737]; ilvG operon leader peptide 3948443 ilvL 948283 ilvL Escherichia coli K12 ilvG operon leader peptide NP_418215.1 3948345 D 83333 CDS b4488 2847699 join(3948583..3949566,3949565..3950227) 1 NC_000913.2 pseudogene, acetohydroxy acid synthase II acetolactate synthase II, large subunit, cryptic, interrupted; 3950227 ilvG 2847699 ilvG Escherichia coli K12 3948583 D 83333 CDS NP_418217.1 16131627 948279 3950224..3950487 1 NC_000913.2 acetolactate synthase II, valine insensitive, small subunit; acetolactate synthase II, small subunit 3950487 ilvM 948279 ilvM Escherichia coli K12 acetolactate synthase II, small subunit NP_418217.1 3950224 D 83333 CDS YP_026247.1 49176403 948278 3950507..3951436 1 NC_000913.2 GO_process: alanine biosynthetic process [goid 0006523]; GO_process: leucine biosynthetic process [goid 0009098]; branched-chain amino-acid aminotransferase 3951436 ilvE 948278 ilvE Escherichia coli K12 branched-chain amino-acid aminotransferase YP_026247.1 3950507 D 83333 CDS YP_026248.1 49176404 948277 3951501..3953351 1 NC_000913.2 dihydroxyacid dehydratase 3953351 ilvD 948277 ilvD Escherichia coli K12 dihydroxyacid dehydratase YP_026248.1 3951501 D 83333 CDS NP_418220.1 16131630 948287 3953354..3954898 1 NC_000913.2 threonine deaminase (dehydratase); threonine deaminase 3954898 ilvA 948287 ilvA Escherichia coli K12 threonine deaminase NP_418220.1 3953354 D 83333 CDS NP_418221.1 16131631 948284 complement(3954950..3955843) 1 NC_000913.2 positive regulator for ilvC; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 3955843 ilvY 948284 ilvY Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418221.1 3954950 R 83333 CDS NP_418222.1 16131632 948286 3955993..3957468 1 NC_000913.2 ketol-acid reductoisomerase; GO_component: cytoplasm [goid 0005737]; ketol-acid reductoisomerase, NAD(P)-binding 3957468 ilvC 948286 ilvC Escherichia coli K12 ketol-acid reductoisomerase, NAD(P)-binding NP_418222.1 3955993 D 83333 CDS NP_418223.1 16131633 948285 complement(3957555..3957836) 1 NC_000913.2 GO_process: protein folding [goid 0006457]; peptidyl-prolyl cis-trans isomerase C (rotamase C) 3957836 ppiC 948285 ppiC Escherichia coli K12 peptidyl-prolyl cis-trans isomerase C (rotamase C) NP_418223.1 3957555 R 83333 CDS b3777 2847676 complement(join(3958035..3958277,3958277..3958483)) 1 NC_000913.2 conserved protein (pseudogene); 3958483 yifN 2847676 yifN Escherichia coli K12 3958035 R 83333 CDS YP_026251.1 49176407 948292 3958700..3960721 1 NC_000913.2 rep helicase, a single-stranded DNA dependent ATPase; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA helicase and single-stranded DNA-dependent ATPase 3960721 rep 948292 rep Escherichia coli K12 DNA helicase and single-stranded DNA-dependent ATPase YP_026251.1 3958700 D 83333 CDS YP_026252.1 49176408 948291 complement(3960768..3962252) 1 NC_000913.2 guanosine pentaphosphatase; exopolyphosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: response to starvation [goid 0042594]; guanosine pentaphosphatase/exopolyphosphatase 3962252 gpp 948291 gpp Escherichia coli K12 guanosine pentaphosphatase/exopolyphosphatase YP_026252.1 3960768 R 83333 CDS NP_418227.1 16131636 948290 complement(3962388..3963653) 1 NC_000913.2 putative ATP-dependent RNA helicase; ATP-dependent RNA helicase 3963653 rhlB 948290 rhlB Escherichia coli K12 ATP-dependent RNA helicase NP_418227.1 3962388 R 83333 CDS NP_418228.2 67005950 948289 3963784..3964113 1 NC_000913.2 thioredoxin 1 3964113 trxA 948289 trxA Escherichia coli K12 thioredoxin 1 NP_418228.2 3963784 D 83333 CDS NP_418230.1 16131639 948297 3964440..3965699 1 NC_000913.2 transcription termination factor Rho; polarity suppressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; transcription termination factor 3965699 rho 948297 rho Escherichia coli K12 transcription termination factor NP_418230.1 3964440 D 83333 CDS NP_418231.1 16131640 948789 3965939..3967042 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase 3967042 rfe 948789 rfe Escherichia coli K12 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase NP_418231.1 3965939 D 83333 CDS NP_418232.2 90111649 944815 3967054..3968100 1 NC_000913.2 modulator of enterobacterial common antigen (ECA) polysaccharide chain length; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein 3968100 wzzE 944815 wzzE Escherichia coli K12 Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein NP_418232.2 3967054 D 83333 CDS YP_026253.1 49176409 944789 3968156..3969286 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-N-acetyl glucosamine-2-epimerase 3969286 rffE 944789 rffE Escherichia coli K12 UDP-N-acetyl glucosamine-2-epimerase YP_026253.1 3968156 D 83333 CDS YP_026254.1 49176410 948977 3969283..3970545 1 NC_000913.2 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; synthesis of enterobacterial common antigen (ECA); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase 3970545 rffD 948977 rffD Escherichia coli K12 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase YP_026254.1 3969283 D 83333 CDS YP_026255.1 49176411 948300 3970545..3971612 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; GO_process: NAD biosynthetic process [goid 0009435]; dTDP-glucose 4,6-dehydratase 3971612 rffG 948300 rffG Escherichia coli K12 dTDP-glucose 4,6-dehydratase YP_026255.1 3970545 D 83333 CDS NP_418236.1 16131645 948299 3971631..3972512 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: O antigen biosynthetic process [goid 0009243]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; glucose-1-phosphate thymidylyltransferase 3972512 rffH 948299 rffH Escherichia coli K12 glucose-1-phosphate thymidylyltransferase NP_418236.1 3971631 D 83333 CDS YP_026256.2 145698332 948298 3972490..3973164 1 NC_000913.2 putative acyltransferase, lipopolysaccharide biosynthesis protein; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; TDP-fucosamine acetyltransferase 3973164 rffC 948298 rffC Escherichia coli K12 TDP-fucosamine acetyltransferase YP_026256.2 3972490 D 83333 CDS NP_418238.1 16131647 948296 3973169..3974299 1 NC_000913.2 GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; TDP-4-oxo-6-deoxy-D-glucose transaminase 3974299 rffA 948296 rffA Escherichia coli K12 TDP-4-oxo-6-deoxy-D-glucose transaminase NP_418238.1 3973169 D 83333 CDS NP_418239.1 16131648 948294 3974301..3975551 1 NC_000913.2 O-antigen translocase in LPS biosynthesis; GO_process: cytochrome complex assembly [goid 0017004]; O-antigen translocase 3975551 wzxE 948294 wzxE Escherichia coli K12 O-antigen translocase NP_418239.1 3974301 D 83333 CDS YP_026257.1 49176413 2847677 3975548..3976627 1 NC_000913.2 TDP-Fuc4NAc:lipidII transferase; TDP-Fuc4NAc:lipidIIFuc4NAc transferase 3976627 rffT 2847677 rffT Escherichia coli K12 TDP-Fuc4NAc:lipidIIFuc4NAc transferase YP_026257.1 3975548 D 83333 CDS NP_418241.1 16131649 948293 3976624..3977976 1 NC_000913.2 putative ECA polymerization protein; GO_component: organelle inner membrane [goid 0019866]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; predicted Wzy protein involved in ECA polysaccharide chain elongation 3977976 wzyE 948293 wzyE Escherichia coli K12 predicted Wzy protein involved in ECA polysaccharide chain elongation NP_418241.1 3976624 D 83333 CDS NP_418242.1 16131650 948301 3977979..3978719 1 NC_000913.2 probable UDP-N-acetyl-D-mannosaminuronic acid transferase; synthesis of enterobacterial common antigen (ECA); GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: enterobacterial common antigen biosynthetic process [goid 0009246]; UDP-N-acetyl-D-mannosaminuronic acid transferase 3978719 rffM 948301 rffM Escherichia coli K12 UDP-N-acetyl-D-mannosaminuronic acid transferase NP_418242.1 3977979 D 83333 CDS YP_026258.1 49176414 945400 3978910..3980295 1 NC_000913.2 putative amino acid/amine transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 3980295 yifK 945400 yifK Escherichia coli K12 predicted transporter YP_026258.1 3978910 D 83333 CDS YP_026259.1 49176415 949013 3980981..3982216 1 NC_000913.2 putative arylsulfatase regulator; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: protein folding [goid 0006457]; predicted regulator of arylsulfatase activity 3982216 aslB 949013 aslB Escherichia coli K12 predicted regulator of arylsulfatase activity YP_026259.1 3980981 D 83333 CDS NP_418245.1 16131653 949015 complement(3982375..3984030) 1 NC_000913.2 arylsulfatase; GO_component: cytoplasm [goid 0005737]; GO_process: sulfur metabolic process [goid 0006790]; acrylsulfatase-like enzyme 3984030 aslA 949015 aslA Escherichia coli K12 acrylsulfatase-like enzyme NP_418245.1 3982375 R 83333 CDS NP_418246.1 16131654 948311 complement(3984709..3985905) 1 NC_000913.2 a late step of protoheme IX synthesis; predicted protoheme IX synthesis protein 3985905 hemY 948311 hemY Escherichia coli K12 predicted protoheme IX synthesis protein NP_418246.1 3984709 R 83333 CDS NP_418247.1 16131655 948446 complement(3985908..3987089) 1 NC_000913.2 uroporphyrinogen III methylase; predicted uroporphyrinogen III methylase 3987089 hemX 948446 hemX Escherichia coli K12 predicted uroporphyrinogen III methylase NP_418247.1 3985908 R 83333 CDS NP_418248.1 16131656 948587 complement(3987111..3987851) 1 NC_000913.2 uroporphyrinogen III synthase 3987851 hemD 948587 hemD Escherichia coli K12 uroporphyrinogen III synthase NP_418248.1 3987111 R 83333 CDS YP_026260.1 49176416 947759 complement(3987848..3988789) 1 NC_000913.2 porphobilinogen deaminase = hydroxymethylbilane synthase; hydroxymethylbilane synthase 3988789 hemC 947759 hemC Escherichia coli K12 hydroxymethylbilane synthase YP_026260.1 3987848 R 83333 CDS NP_418250.1 16131658 947755 3989176..3991722 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; adenylate cyclase 3991722 cyaA 947755 cyaA Escherichia coli K12 adenylate cyclase NP_418250.1 3989176 D 83333 CDS NP_418251.1 16131659 947754 complement(3991762..3992082) 1 NC_000913.2 iron-binding frataxin homolog cyaY is expressed neither knock-out nor overexpression of cyaY in Escherichia coli affects cellular iron content or sensitivity to oxidants possibly involved in maintaining the intracellular iron pool in a soluble, non-toxic and bio-available form for biosynthetic pathways, while preventing the participation of iron in oxidative damage; frataxin, iron-binding and oxidizing protein 3992082 cyaY 947754 cyaY Escherichia coli K12 frataxin, iron-binding and oxidizing protein NP_418251.1 3991762 R 83333 CDS YP_588473.1 94541130 1450304 3992545..3992748 1 NC_000913.2 predicted lipoprotein 3992748 yifL 1450304 yifL Escherichia coli K12 predicted lipoprotein YP_588473.1 3992545 D 83333 CDS NP_418254.2 90111650 948364 3992785..3993609 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; diaminopimelate epimerase 3993609 dapF 948364 dapF Escherichia coli K12 diaminopimelate epimerase NP_418254.2 3992785 D 83333 CDS NP_418255.1 16131662 948359 3993606..3994313 1 NC_000913.2 conserved protein 3994313 yigA 948359 yigA Escherichia coli K12 conserved protein NP_418255.1 3993606 D 83333 CDS NP_418256.1 16131663 948355 3994310..3995206 1 NC_000913.2 site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division; GO_process: DNA recombination [goid 0006310]; site-specific tyrosine recombinase 3995206 xerC 948355 xerC Escherichia coli K12 site-specific tyrosine recombinase NP_418256.1 3994310 D 83333 CDS NP_418257.1 16131664 948357 3995206..3995922 1 NC_000913.2 putative phosphatase; predicted hydrolase 3995922 yigB 948357 yigB Escherichia coli K12 predicted hydrolase NP_418257.1 3995206 D 83333 CDS NP_418258.1 16131665 948347 3996006..3998168 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: SOS response [goid 0009432]; DNA-dependent ATPase I and helicase II 3998168 uvrD 948347 uvrD Escherichia coli K12 DNA-dependent ATPase I and helicase II NP_418258.1 3996006 D 83333 CDS YP_026261.1 49176417 2847679 complement(3998315..3999079) 1 NC_000913.2 predicted protein 3999079 yigE 2847679 yigE Escherichia coli K12 predicted protein YP_026261.1 3998315 R 83333 CDS NP_418260.1 16131666 948351 3999449..4000399 1 NC_000913.2 Mg2+ transport, system I; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; magnesium/nickel/cobalt transporter 4000399 corA 948351 corA Escherichia coli K12 magnesium/nickel/cobalt transporter NP_418260.1 3999449 D 83333 CDS NP_418261.1 16131667 948340 complement(4000442..4000822) 1 NC_000913.2 conserved inner membrane protein 4000822 yigF 948340 yigF Escherichia coli K12 conserved inner membrane protein NP_418261.1 4000442 R 83333 CDS NP_418262.2 90111651 948344 complement(4000836..4001216) 1 NC_000913.2 predicted inner membrane protein 4001216 yigG 948344 yigG Escherichia coli K12 predicted inner membrane protein NP_418262.2 4000836 R 83333 CDS YP_026262.1 49176418 948330 complement(4001311..4002201) 1 NC_000913.2 GO_process: response to drug [goid 0042493]; GO_process: chloramphenicol transport [goid 0042892]; predicted chloramphenical resistance permease 4002201 rarD 948330 rarD Escherichia coli K12 predicted chloramphenical resistance permease YP_026262.1 4001311 R 83333 CDS NP_418264.4 90111652 948338 complement(4002253..4002720) 1 NC_000913.2 conserved protein 4002720 yigI 948338 yigI Escherichia coli K12 conserved protein NP_418264.4 4002253 R 83333 CDS NP_418265.1 16131671 948307 4002885..4003754 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: phosphorus metabolic process [goid 0006793]; outer membrane phospholipase A 4003754 pldA 948307 pldA Escherichia coli K12 outer membrane phospholipase A NP_418265.1 4002885 D 83333 CDS YP_026263.3 162135918 948318 4003887..4005716 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: DNA repair [goid 0006281]; GO_process: DNA recombination [goid 0006310]; ATP-dependent DNA helicase 4005716 recQ 948318 recQ Escherichia coli K12 ATP-dependent DNA helicase YP_026263.3 4003887 D 83333 CDS YP_026264.1 49176421 948317 4005780..4006400 1 NC_000913.2 amino acid exporter (threonine) threonine efflux protein (RhtB family); GO_component: organelle inner membrane [goid 0019866]; GO_process: threonine biosynthetic process [goid 0009088]; threonine efflux system 4006400 rhtC 948317 rhtC Escherichia coli K12 threonine efflux system YP_026264.1 4005780 D 83333 CDS YP_026265.1 49176422 948316 complement(4006462..4007082) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: L-serine biosynthetic process [goid 0006564]; neutral amino-acid efflux system 4007082 rhtB 948316 rhtB Escherichia coli K12 neutral amino-acid efflux system YP_026265.1 4006462 R 83333 CDS YP_026266.1 49176423 948314 4007193..4008215 1 NC_000913.2 GO_process: phosphorus metabolic process [goid 0006793]; lysophospholipase L(2) 4008215 pldB 948314 pldB Escherichia coli K12 lysophospholipase L(2) YP_026266.1 4007193 D 83333 CDS YP_026267.1 49176424 2847768 4008223..4009023 1 NC_000913.2 conserved protein, phosphatase-like domain; predicted hydrolase 4009023 yigL 2847768 yigL Escherichia coli K12 predicted hydrolase YP_026267.1 4008223 D 83333 CDS NP_418271.1 16131676 948309 4009099..4009998 1 NC_000913.2 predicted inner membrane protein 4009998 yigM 948309 yigM Escherichia coli K12 predicted inner membrane protein NP_418271.1 4009099 D 83333 CDS NP_418272.1 16131677 948310 complement(4009886..4010839) 1 NC_000913.2 regulator for metE and metH; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, homocysteine-binding 4010839 metR 948310 metR Escherichia coli K12 DNA-binding transcriptional activator, homocysteine-binding NP_418272.1 4009886 R 83333 CDS NP_418273.1 16131678 948323 4011076..4013337 1 NC_000913.2 tetrahydropteroyltriglutamate methyltransferase; GO_component: cytoplasm [goid 0005737]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: S-adenosylmethionine biosynthetic process [goid 0006556]; 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase 4013337 metE 948323 metE Escherichia coli K12 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase NP_418273.1 4011076 D 83333 CDS YP_026268.1 49176425 948320 complement(4013377..4014192) 1 NC_000913.2 putative enzyme; predicted hydrolase 4014192 ysgA 948320 ysgA Escherichia coli K12 predicted hydrolase YP_026268.1 4013377 R 83333 CDS NP_418275.1 16131680 948987 4014454..4015215 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; uridine phosphorylase 4015215 udp 948987 udp Escherichia coli K12 uridine phosphorylase NP_418275.1 4014454 D 83333 CDS NP_418276.1 16131681 948966 4015356..4016783 1 NC_000913.2 putative alpha helix chain; predicted recombination limiting protein 4016783 rmuC 948966 rmuC Escherichia coli K12 predicted recombination limiting protein NP_418276.1 4015356 D 83333 CDS YP_026269.1 49176426 948926 4016878..4017633 1 NC_000913.2 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone; GO_process: aerobic respiration [goid 0009060]; GO_process: anaerobic respiration [goid 0009061]; bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase 4017633 ubiE 948926 ubiE Escherichia coli K12 bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase YP_026269.1 4016878 D 83333 CDS NP_418278.1 16131683 948915 4017647..4018252 1 NC_000913.2 conserved protein 4018252 yigP 948915 yigP Escherichia coli K12 conserved protein NP_418278.1 4017647 D 83333 CDS NP_418279.1 16131684 948322 4018249..4019889 1 NC_000913.2 2-octaprenylphenol hydroxylase 4019889 ubiB 948322 ubiB Escherichia coli K12 2-octaprenylphenol hydroxylase NP_418279.1 4018249 D 83333 CDS NP_418280.4 90111653 948321 4019968..4020237 1 NC_000913.2 TatABCE protein translocation system subunit 4020237 tatA 948321 tatA Escherichia coli K12 TatABCE protein translocation system subunit NP_418280.4 4019968 D 83333 CDS YP_026270.1 49176428 948319 4020241..4020756 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; TatABCE protein translocation system subunit 4020756 tatB 948319 tatB Escherichia coli K12 TatABCE protein translocation system subunit YP_026270.1 4020241 D 83333 CDS NP_418282.1 16131687 948328 4020759..4021535 1 NC_000913.2 TatABCE protein translocation system subunit 4021535 tatC 948328 tatC Escherichia coli K12 TatABCE protein translocation system subunit NP_418282.1 4020759 D 83333 CDS YP_026271.1 49176429 2847752 4021577..4022359 1 NC_000913.2 cytoplasmic Dnase; GO_component: cytoplasm [goid 0005737]; DNase, magnesium-dependent 4022359 tatD 2847752 tatD Escherichia coli K12 DNase, magnesium-dependent YP_026271.1 4021577 D 83333 CDS NP_418284.1 16131688 948327 complement(4022356..4022844) 1 NC_000913.2 transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: cell surface antigen activity, host-interacting [goid 0042280]; GO_process: lipopolysaccharide core region biosynthetic process [goid 0009244]; GO_process: pilus biogenesis [goid 0009297]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional antiterminator 4022844 rfaH 948327 rfaH Escherichia coli K12 DNA-binding transcriptional antiterminator NP_418284.1 4022356 R 83333 CDS NP_418285.1 16131689 948326 4023011..4024504 1 NC_000913.2 3-octaprenyl-4-hydroxybenzoate decarboxylase 4024504 ubiD 948326 ubiD Escherichia coli K12 3-octaprenyl-4-hydroxybenzoate decarboxylase NP_418285.1 4023011 D 83333 CDS NP_418286.1 16131690 948325 4024550..4025251 1 NC_000913.2 ferrisiderophore reductase; flavin reductase (NADPH:flavin oxidoreductase); GO_function: electron carrier activity [goid 0009055]; flavin reductase 4025251 fre 948325 fre Escherichia coli K12 flavin reductase NP_418286.1 4024550 D 83333 CDS YP_026272.1 49176430 948324 complement(4025632..4026795) 1 NC_000913.2 thiolase I; 3-ketoacyl-CoA thiolase; acetyl-CoA transferase; GO_component: cytoplasm [goid 0005737]; GO_process: fatty acid oxidation [goid 0019395]; 3-ketoacyl-CoA thiolase (thiolase I) 4026795 fadA 948324 fadA Escherichia coli K12 3-ketoacyl-CoA thiolase (thiolase I) YP_026272.1 4025632 R 83333 CDS NP_418288.1 16131692 948336 complement(4026805..4028994) 1 NC_000913.2 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase; GO_process: fatty acid oxidation [goid 0019395]; fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 4028994 fadB 948336 fadB Escherichia coli K12 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase NP_418288.1 4026805 R 83333 CDS NP_418289.1 16131693 948335 4029184..4030515 1 NC_000913.2 proline dipeptidase 4030515 pepQ 948335 pepQ Escherichia coli K12 proline dipeptidase NP_418289.1 4029184 D 83333 CDS NP_418290.4 90111654 948334 4030515..4031129 1 NC_000913.2 GO_process: translation [goid 0006412]; predicted elongation factor 4031129 yigZ 948334 yigZ Escherichia coli K12 predicted elongation factor NP_418290.4 4030515 D 83333 CDS YP_026273.1 49176432 948333 4031168..4032619 1 NC_000913.2 potassium uptake, requires TrkE; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; potassium transporter 4032619 trkH 948333 trkH Escherichia coli K12 potassium transporter YP_026273.1 4031168 D 83333 CDS NP_418292.1 16131696 948331 4032631..4033176 1 NC_000913.2 protoporphyrin oxidase; protoporphyrin oxidase, flavoprotein 4033176 hemG 948331 hemG Escherichia coli K12 protoporphyrin oxidase, flavoprotein NP_418292.1 4032631 D 83333 CDS NP_418293.2 145698333 948343 complement(4038929..4039456) 1 NC_000913.2 GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin-guanine dinucleotide biosynthesis protein B 4039456 mobB 948343 mobB Escherichia coli K12 molybdopterin-guanine dinucleotide biosynthesis protein B NP_418293.2 4038929 R 83333 CDS NP_418294.1 16131698 948349 complement(4039438..4040022) 1 NC_000913.2 molybdopterin ---> molybdopterin-guanine dinucleotide, protein Ar; GO_process: Mo-molybdopterin cofactor biosynthetic process [goid 0006777]; molybdopterin-guanine dinucleotide synthase 4040022 mobA 948349 mobA Escherichia coli K12 molybdopterin-guanine dinucleotide synthase NP_418294.1 4039438 R 83333 CDS NP_418295.1 16131699 948348 4040092..4040361 1 NC_000913.2 conserved protein 4040361 yihD 948348 yihD Escherichia coli K12 conserved protein NP_418295.1 4040092 D 83333 CDS NP_418296.1 16131700 948346 4040438..4041424 1 NC_000913.2 Thr/Ser kinase implicated in Cpx stress response 4041424 rdoA 948346 rdoA Escherichia coli K12 Thr/Ser kinase implicated in Cpx stress response NP_418296.1 4040438 D 83333 CDS NP_418297.1 16131701 948353 4041441..4042067 1 NC_000913.2 protein disulfide isomerase I, essential for cytochrome c synthesis and formate-dependent reduction; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; GO_process: response to stress [goid 0006950]; periplasmic protein disulfide isomerase I 4042067 dsbA 948353 dsbA Escherichia coli K12 periplasmic protein disulfide isomerase I NP_418297.1 4041441 D 83333 CDS NP_418298.4 90111655 948352 4042222..4043652 1 NC_000913.2 putative GTP-binding protein; conserved protein 4043652 yihF 948352 yihF Escherichia coli K12 conserved protein NP_418298.4 4042222 D 83333 CDS NP_418299.1 16131703 948350 complement(4043693..4044625) 1 NC_000913.2 putative endonuclease; predicted endonuclease 4044625 yihG 948350 yihG Escherichia coli K12 predicted endonuclease NP_418299.1 4043693 R 83333 CDS NP_418300.1 16131704 948356 4044989..4047775 1 NC_000913.2 DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease 4047775 polA 948356 polA Escherichia coli K12 fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease NP_418300.1 4044989 D 83333 CDS NP_418301.3 145698334 948358 complement(4048156..4048788) 1 NC_000913.2 GTPase essential for cell cycle; GO_process: cell cycle [goid 0007049]; GTP-binding protein 4048788 yihA 948358 yihA Escherichia coli K12 GTP-binding protein NP_418301.3 4048156 R 83333 CDS NP_418302.1 16131706 948363 4049370..4049879 1 NC_000913.2 conserved protein 4049879 yihI 948363 yihI Escherichia coli K12 conserved protein NP_418302.1 4049370 D 83333 CDS NP_418303.2 90111657 948362 4050068..4051441 1 NC_000913.2 O2-independent coproporphyrinogen III oxidase; coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent 4051441 hemN 948362 hemN Escherichia coli K12 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent NP_418303.2 4050068 D 83333 CDS NP_418304.1 16131708 948361 complement(4051892..4053301) 1 NC_000913.2 response regulator for gln (sensor glnL) (nitrogen regulator I, NRI); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: transcription [goid 0006350]; fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein 4053301 glnG 948361 glnG Escherichia coli K12 fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein NP_418304.1 4051892 R 83333 CDS NP_418305.1 16131709 948360 complement(4053313..4054362) 1 NC_000913.2 histidine protein kinase sensor for GlnG regulator (nitrogen regulator II, NRII); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with GlnG 4054362 glnL 948360 glnL Escherichia coli K12 sensory histidine kinase in two-component regulatory system with GlnG NP_418305.1 4053313 R 83333 CDS NP_418306.1 16131710 948370 complement(4054648..4056057) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glutamine biosynthetic process [goid 0006542]; GO_process: nitrogen compound metabolic process [goid 0006807]; glutamine synthetase 4056057 glnA 948370 glnA Escherichia coli K12 glutamine synthetase NP_418306.1 4054648 R 83333 CDS YP_026274.1 49176434 948369 4056430..4058253 1 NC_000913.2 GTP-binding protein 4058253 typA 948369 typA Escherichia coli K12 GTP-binding protein YP_026274.1 4056430 D 83333 CDS NP_418308.1 16131712 948368 4058470..4059180 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 4059180 yihL 948368 yihL Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418308.1 4058470 D 83333 CDS NP_418309.1 16131713 948367 4059188..4060168 1 NC_000913.2 predicted sugar phosphate isomerase 4060168 yihM 948367 yihM Escherichia coli K12 predicted sugar phosphate isomerase NP_418309.1 4059188 D 83333 CDS NP_418310.1 16131714 948365 4060270..4061535 1 NC_000913.2 putative resistance protein (transport); GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4061535 yihN 948365 yihN Escherichia coli K12 predicted transporter NP_418310.1 4060270 D 83333 CDS NP_418311.1 16131715 948366 complement(4061626..4062318) 1 NC_000913.2 predicted outer membrane porin L 4062318 ompL 948366 ompL Escherichia coli K12 predicted outer membrane porin L NP_418311.1 4061626 R 83333 CDS YP_026275.1 49176435 948377 complement(4062386..4063789) 1 NC_000913.2 putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4063789 yihO 948377 yihO Escherichia coli K12 predicted transporter YP_026275.1 4062386 R 83333 CDS NP_418313.4 145698335 948371 complement(4063832..4065217) 1 NC_000913.2 putative permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4065217 yihP 948371 yihP Escherichia coli K12 predicted transporter NP_418313.4 4063832 R 83333 CDS NP_418314.1 16131718 948376 complement(4065263..4067299) 1 NC_000913.2 putative glycosidase; alpha-glucosidase 4067299 yihQ 948376 yihQ Escherichia coli K12 alpha-glucosidase NP_418314.1 4065263 R 83333 CDS NP_418315.3 49176437 948375 complement(4067498..4068424) 1 NC_000913.2 putative aldose-1-epimerase; predicted aldose-1-epimerase 4068424 yihR 948375 yihR Escherichia coli K12 predicted aldose-1-epimerase NP_418315.3 4067498 R 83333 CDS NP_418316.4 90111658 948374 complement(4068538..4069779) 1 NC_000913.2 predicted glucosamine isomerase 4069779 yihS 948374 yihS Escherichia coli K12 predicted glucosamine isomerase NP_418316.4 4068538 R 83333 CDS NP_418317.1 16131721 948373 complement(4069796..4070674) 1 NC_000913.2 putative aldolase; predicted aldolase 4070674 yihT 948373 yihT Escherichia coli K12 predicted aldolase NP_418317.1 4069796 R 83333 CDS NP_418318.1 16131722 948372 complement(4070698..4071594) 1 NC_000913.2 putative dehydrogenase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 4071594 yihU 948372 yihU Escherichia coli K12 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_418318.1 4070698 R 83333 CDS NP_418319.2 90111659 948382 4071762..4072658 1 NC_000913.2 putative kinase; predicted sugar kinase 4072658 yihV 948382 yihV Escherichia coli K12 predicted sugar kinase NP_418319.2 4071762 D 83333 CDS NP_418320.2 90111660 948381 4072692..4073477 1 NC_000913.2 putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 4073477 yihW 948381 yihW Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418320.2 4072692 D 83333 CDS NP_418321.4 90111661 948380 4073576..4074175 1 NC_000913.2 putative phosphatase; predicted hydrolase 4074175 yihX 948380 yihX Escherichia coli K12 predicted hydrolase NP_418321.4 4073576 D 83333 CDS NP_418322.1 16131726 948379 4074169..4075041 1 NC_000913.2 tRNA processing exoribonuclease BN; GO_component: cytoplasm [goid 0005737]; predicted inner membrane protein 4075041 yihY 948379 yihY Escherichia coli K12 predicted inner membrane protein NP_418322.1 4074169 D 83333 CDS NP_418323.1 16131727 948378 4075038..4075475 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; GO_process: xenobiotic metabolic process [goid 0006805]; D-tyr-tRNA(Tyr) deacylase 4075475 dtd 948378 dtd Escherichia coli K12 D-tyr-tRNA(Tyr) deacylase NP_418323.1 4075038 D 83333 CDS NP_418324.1 16131728 948387 4075472..4076461 1 NC_000913.2 putative acetyltransferase; predicted acetyltransferase 4076461 yiiD 948387 yiiD Escherichia coli K12 predicted acetyltransferase NP_418324.1 4075472 D 83333 CDS NP_418325.3 145698336 948386 4077320..4077532 1 NC_000913.2 predicted transcriptional regulator 4077532 yiiE 948386 yiiE Escherichia coli K12 predicted transcriptional regulator NP_418325.3 4077320 D 83333 CDS NP_418326.2 90111663 948385 4077774..4077992 1 NC_000913.2 conserved protein 4077992 yiiF 948385 yiiF Escherichia coli K12 conserved protein NP_418326.2 4077774 D 83333 CDS NP_418327.1 16131731 948384 complement(4078322..4079251) 1 NC_000913.2 affects formate dehydrogenase-N; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; formate dehydrogenase formation protein 4079251 fdhE 948384 fdhE Escherichia coli K12 formate dehydrogenase formation protein NP_418327.1 4078322 R 83333 CDS NP_418328.1 16131732 948383 complement(4079248..4079883) 1 NC_000913.2 formate dehydrogenase, cytochrome B556 (FDO) subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; formate dehydrogenase-O, cytochrome b556 subunit 4079883 fdoI 948383 fdoI Escherichia coli K12 formate dehydrogenase-O, cytochrome b556 subunit NP_418328.1 4079248 R 83333 CDS NP_418329.1 16131733 948395 complement(4079880..4080782) 1 NC_000913.2 formate dehydrogenase-O, iron-sulfur subunit; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-O, Fe-S subunit 4080782 fdoH 948395 fdoH Escherichia coli K12 formate dehydrogenase-O, Fe-S subunit NP_418329.1 4079880 R 83333 CDS NP_418330.1 16131734 948394 complement(4080795..4083845) 1 NC_000913.2 formate dehydrogenase-O, major subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron donor activity [goid 0009053]; GO_process: anaerobic respiration [goid 0009061]; formate dehydrogenase-O, large subunit 4083845 fdoG 948394 fdoG Escherichia coli K12 formate dehydrogenase-O, large subunit NP_418330.1 4080795 R 83333 CDS NP_418331.1 16131735 948393 4084039..4084872 1 NC_000913.2 affects formate dehydrogenase-N; GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein folding [goid 0006457]; formate dehydrogenase formation protein 4084872 fdhD 948393 fdhD Escherichia coli K12 formate dehydrogenase formation protein NP_418331.1 4084039 D 83333 CDS NP_418332.1 16131736 948392 4085025..4086080 1 NC_000913.2 conserved protein 4086080 yiiG 948392 yiiG Escherichia coli K12 conserved protein NP_418332.1 4085025 D 83333 CDS NP_418333.1 16131737 948389 complement(4086130..4087878) 1 NC_000913.2 putative frv operon regulatory protein; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted regulator 4087878 frvR 948389 frvR Escherichia coli K12 predicted regulator NP_418333.1 4086130 R 83333 CDS NP_418334.1 16131738 948388 complement(4087878..4088948) 1 NC_000913.2 frv operon protein; GO_process: polysaccharide catabolic process [goid 0000272]; predicted endo-1,4-beta-glucanase 4088948 frvX 948388 frvX Escherichia coli K12 predicted endo-1,4-beta-glucanase NP_418334.1 4087878 R 83333 CDS NP_418335.4 90111664 948390 complement(4088938..4090389) 1 NC_000913.2 PTS system, fructose-like enzyme IIBC component; fused predicted PTS enzymes: IIB component/IIC component 4090389 frvB 948390 frvB Escherichia coli K12 fused predicted PTS enzymes: IIB component/IIC component NP_418335.4 4088938 R 83333 CDS NP_418336.1 16131740 948391 complement(4090400..4090846) 1 NC_000913.2 PTS system, fructose-specific IIA component; GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIA component of PTS 4090846 frvA 948391 frvA Escherichia coli K12 predicted enzyme IIA component of PTS NP_418336.1 4090400 R 83333 CDS NP_418337.1 16131741 948402 complement(4091147..4091461) 1 NC_000913.2 L-rhamnose mutarotase 4091461 rhaM 948402 rhaM Escherichia coli K12 L-rhamnose mutarotase NP_418337.1 4091147 R 83333 CDS NP_418338.1 16131742 948401 complement(4091471..4092295) 1 NC_000913.2 rhamnulose-phosphate aldolase; GO_process: carbohydrate catabolic process [goid 0016052]; rhamnulose-1-phosphate aldolase 4092295 rhaD 948401 rhaD Escherichia coli K12 rhamnulose-1-phosphate aldolase NP_418338.1 4091471 R 83333 CDS YP_026276.1 49176441 948400 complement(4092746..4094005) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; L-rhamnose isomerase 4094005 rhaA 948400 rhaA Escherichia coli K12 L-rhamnose isomerase YP_026276.1 4092746 R 83333 CDS NP_418340.1 16131744 948399 complement(4094002..4095471) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; rhamnulokinase 4095471 rhaB 948399 rhaB Escherichia coli K12 rhamnulokinase NP_418340.1 4094002 R 83333 CDS NP_418341.1 16131745 948397 4095759..4096595 1 NC_000913.2 positive regulator for rhaBAD operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, L-rhamnose-binding 4096595 rhaS 948397 rhaS Escherichia coli K12 DNA-binding transcriptional activator, L-rhamnose-binding NP_418341.1 4095759 D 83333 CDS NP_418342.1 16131746 948396 4096579..4097517 1 NC_000913.2 positive regulator for rhaRS operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator, L-rhamnose-binding 4097517 rhaR 948396 rhaR Escherichia coli K12 DNA-binding transcriptional activator, L-rhamnose-binding NP_418342.1 4096579 D 83333 CDS NP_418343.1 16131747 948398 complement(4097514..4098548) 1 NC_000913.2 rhamnose transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; L-rhamnose:proton symporter 4098548 rhaT 948398 rhaT Escherichia coli K12 L-rhamnose:proton symporter NP_418343.1 4097514 R 83333 CDS NP_418344.3 49176442 948403 4098833..4099453 1 NC_000913.2 superoxide dismutase, manganese; GO_component: cytoplasm [goid 0005737]; GO_process: xenobiotic metabolic process [goid 0006805]; superoxide dismutase, Mn 4099453 sodA 948403 sodA Escherichia coli K12 superoxide dismutase, Mn NP_418344.3 4098833 D 83333 CDS NP_418345.2 90111665 948407 4099713..4100696 1 NC_000913.2 2-keto-3-deoxy-D-gluconate transport system; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; 2-keto-3-deoxy-D-gluconate transporter 4100696 kdgT 948407 kdgT Escherichia coli K12 2-keto-3-deoxy-D-gluconate transporter NP_418345.2 4099713 D 83333 CDS NP_418346.2 90111666 948406 4100845..4101519 1 NC_000913.2 conserved protein 4101519 yiiM 948406 yiiM Escherichia coli K12 conserved protein NP_418346.2 4100845 D 83333 CDS NP_418347.1 16131751 948405 complement(4101625..4102998) 1 NC_000913.2 probable sensor protein (histidine protein kinase), acting on arcA; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; GO_process: xenobiotic metabolic process [goid 0006805]; sensory histidine kinase in two-component regulatory system with CpxR 4102998 cpxA 948405 cpxA Escherichia coli K12 sensory histidine kinase in two-component regulatory system with CpxR NP_418347.1 4101625 R 83333 CDS NP_418348.1 16131752 948404 complement(4102995..4103693) 1 NC_000913.2 transcriptional regulator in 2-component system; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding response regulator in two-component regulatory system with CpxA 4103693 cpxR 948404 cpxR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with CpxA NP_418348.1 4102995 R 83333 CDS YP_026277.1 49176443 2847688 4103843..4104343 1 NC_000913.2 periplasmic repressor of cpx regulon by interaction with CpxA; GO_component: cytoplasm [goid 0005737]; GO_component: periplasmic space [goid 0042597]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; periplasmic protein combats stress 4104343 cpxP 2847688 cpxP Escherichia coli K12 periplasmic protein combats stress YP_026277.1 4103843 D 83333 CDS NP_418350.1 16131753 948413 4104492..4105394 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; zinc transporter 4105394 fieF 948413 fieF Escherichia coli K12 zinc transporter NP_418350.1 4104492 D 83333 CDS NP_418351.1 16131754 948412 4105575..4106537 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 6-phosphofructokinase I 4106537 pfkA 948412 pfkA Escherichia coli K12 6-phosphofructokinase I NP_418351.1 4105575 D 83333 CDS NP_418352.1 16131755 948411 4106857..4107846 1 NC_000913.2 periplasmic sulfate-binding protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: sulfur metabolic process [goid 0006790]; sulfate transporter subunit 4107846 sbp 948411 sbp Escherichia coli K12 sulfate transporter subunit NP_418352.1 4106857 D 83333 CDS NP_418353.1 16131756 948410 4107953..4108708 1 NC_000913.2 CDP-diacylglycerol phosphotidylhydrolase 4108708 cdh 948410 cdh Escherichia coli K12 CDP-diacylglycerol phosphotidylhydrolase NP_418353.1 4107953 D 83333 CDS NP_418354.1 16131757 948409 complement(4108763..4109530) 1 NC_000913.2 GO_process: glycolysis [goid 0006096]; triosephosphate isomerase 4109530 tpiA 948409 tpiA Escherichia coli K12 triosephosphate isomerase NP_418354.1 4108763 R 83333 CDS NP_418355.1 16131758 948408 complement(4109638..4110237) 1 NC_000913.2 conserved protein 4110237 yiiQ 948408 yiiQ Escherichia coli K12 conserved protein NP_418355.1 4109638 R 83333 CDS NP_418356.1 16131759 948417 4110338..4110778 1 NC_000913.2 conserved inner membrane protein 4110778 yiiR 948417 yiiR Escherichia coli K12 conserved inner membrane protein NP_418356.1 4110338 D 83333 CDS NP_418357.1 16131760 948416 4110990..4111289 1 NC_000913.2 conserved protein 4111289 yiiS 948416 yiiS Escherichia coli K12 conserved protein NP_418357.1 4110990 D 83333 CDS NP_418358.1 16131761 948415 4111316..4111744 1 NC_000913.2 putative regulator; GO_process: response to stress [goid 0006950]; stress-induced protein 4111744 uspD 948415 uspD Escherichia coli K12 stress-induced protein NP_418358.1 4111316 D 83333 CDS NP_418359.1 16131762 948414 complement(4111749..4112495) 1 NC_000913.2 GO_process: xenobiotic metabolic process [goid 0006805]; ferredoxin-NADP reductase 4112495 fpr 948414 fpr Escherichia coli K12 ferredoxin-NADP reductase NP_418359.1 4111749 R 83333 CDS NP_418360.1 16131763 948424 complement(4112592..4113602) 1 NC_000913.2 unknown function in glycerol metabolism; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid biosynthetic process [goid 0008652]; fructose 1,6-bisphosphatase II 4113602 glpX 948424 glpX Escherichia coli K12 fructose 1,6-bisphosphatase II NP_418360.1 4112592 R 83333 CDS NP_418361.1 16131764 948423 complement(4113737..4115245) 1 NC_000913.2 GO_process: glycerol metabolic process [goid 0006071]; glycerol kinase 4115245 glpK 948423 glpK Escherichia coli K12 glycerol kinase NP_418361.1 4113737 R 83333 CDS NP_418362.1 16131765 948422 complement(4115268..4116113) 1 NC_000913.2 facilitated diffusion of glycerol; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glycerol metabolic process [goid 0006071]; glycerol facilitator 4116113 glpF 948422 glpF Escherichia coli K12 glycerol facilitator NP_418362.1 4115268 R 83333 CDS NP_418363.1 16131766 948420 4116538..4116783 1 NC_000913.2 conserved protein 4116783 yiiU 948420 yiiU Escherichia coli K12 conserved protein NP_418363.1 4116538 D 83333 CDS NP_418364.1 16131767 948419 complement(4116868..4117353) 1 NC_000913.2 menaquinone biosynthesis, unknown; ribonuclease E (RNase E) inhibitor protein 4117353 rraA 948419 rraA Escherichia coli K12 ribonuclease E (RNase E) inhibitor protein NP_418364.1 4116868 R 83333 CDS NP_418365.1 16131768 948418 complement(4117446..4118372) 1 NC_000913.2 1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4118372 menA 948418 menA Escherichia coli K12 1,4-dihydroxy-2-naphthoate octaprenyltransferase NP_418365.1 4117446 R 83333 CDS NP_418366.1 16131769 948430 complement(4118439..4119770) 1 NC_000913.2 heat shock protein hslVU, ATPase subunit, homologous to chaperones; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: proteolysis [goid 0006508]; GO_process: protein folding [goid 0006457]; GO_process: response to temperature stimulus [goid 0009266]; molecular chaperone and ATPase component of HslUV protease 4119770 hslU 948430 hslU Escherichia coli K12 molecular chaperone and ATPase component of HslUV protease NP_418366.1 4118439 R 83333 CDS NP_418367.1 16131770 948429 complement(4119780..4120310) 1 NC_000913.2 heat shock protein hslVU, proteasome-related peptidase subunit; GO_component: cytoplasm [goid 0005737]; GO_function: peptidase activity [goid 0008233]; GO_process: proteolysis [goid 0006508]; GO_process: protein folding [goid 0006457]; peptidase component of the HslUV protease 4120310 hslV 948429 hslV Escherichia coli K12 peptidase component of the HslUV protease NP_418367.1 4119780 R 83333 CDS NP_418368.1 16131771 948428 complement(4120403..4121362) 1 NC_000913.2 GO_component: organelle inner membrane [goid 0019866]; essential cell division protein 4121362 ftsN 948428 ftsN Escherichia coli K12 essential cell division protein NP_418368.1 4120403 R 83333 CDS NP_418369.1 16131772 948427 complement(4121454..4122479) 1 NC_000913.2 regulator for deo operon, udp, cdd, tsx, nupC, and nupG; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 4122479 cytR 948427 cytR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418369.1 4121454 R 83333 CDS NP_418370.1 16131773 948426 complement(4122635..4124833) 1 NC_000913.2 primosomal protein N'(= factor Y)(putative helicase); GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; Primosome factor n' (replication factor Y) 4124833 priA 948426 priA Escherichia coli K12 Primosome factor n' (replication factor Y) NP_418370.1 4122635 R 83333 CDS NP_418371.1 16131774 948425 4125036..4125248 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L31 4125248 rpmE 948425 rpmE Escherichia coli K12 50S ribosomal subunit protein L31 NP_418371.1 4125036 D 83333 CDS NP_418372.1 16131775 948436 complement(4125309..4125917) 1 NC_000913.2 predicted peptidoglycan peptidase 4125917 yiiX 948436 yiiX Escherichia coli K12 predicted peptidoglycan peptidase NP_418372.1 4125309 R 83333 CDS NP_418373.1 16131776 948435 complement(4126101..4126418) 1 NC_000913.2 repressor of all met genes but metF; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, S-adenosylmethionine-binding 4126418 metJ 948435 metJ Escherichia coli K12 DNA-binding transcriptional repressor, S-adenosylmethionine-binding NP_418373.1 4126101 R 83333 CDS NP_418374.1 16131777 948434 4126695..4127855 1 NC_000913.2 cystathionine gamma-synthase; GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: methionine biosynthetic process [goid 0009086]; cystathionine gamma-synthase, PLP-dependent 4127855 metB 948434 metB Escherichia coli K12 cystathionine gamma-synthase, PLP-dependent NP_418374.1 4126695 D 83333 CDS NP_418375.1 16131778 948433 4127858..4130290 1 NC_000913.2 aspartokinase II and homoserine dehydrogenase II; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: homoserine biosynthetic process [goid 0009090]; fused aspartokinase II/homoserine dehydrogenase II 4130290 metL 948433 metL Escherichia coli K12 fused aspartokinase II/homoserine dehydrogenase II NP_418375.1 4127858 D 83333 CDS NP_418376.1 16131779 948432 4130639..4131529 1 NC_000913.2 5,10-methylenetetrahydrofolate reductase 4131529 metF 948432 metF Escherichia coli K12 5,10-methylenetetrahydrofolate reductase NP_418376.1 4130639 D 83333 CDS NP_418377.1 16131780 948431 4131858..4134038 1 NC_000913.2 catalase; hydroperoxidase HPI(I); GO_process: xenobiotic metabolic process [goid 0006805]; catalase/hydroperoxidase HPI(I) 4134038 katG 948431 katG Escherichia coli K12 catalase/hydroperoxidase HPI(I) NP_418377.1 4131858 D 83333 CDS NP_418378.4 90111667 948445 4134131..4135036 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted permease 4135036 yijE 948445 yijE Escherichia coli K12 predicted permease NP_418378.4 4134131 D 83333 CDS NP_418379.1 16131782 948441 complement(4135063..4135680) 1 NC_000913.2 conserved protein 4135680 yijF 948441 yijF Escherichia coli K12 conserved protein NP_418379.1 4135063 R 83333 CDS NP_418380.4 90111668 948440 complement(4135955..4137058) 1 NC_000913.2 glycerol dehydrogenase, (NAD); GO_process: glycerol metabolic process [goid 0006071]; glycerol dehydrogenase, NAD 4137058 gldA 948440 gldA Escherichia coli K12 glycerol dehydrogenase, NAD NP_418380.4 4135955 R 83333 CDS NP_418381.1 16131784 948439 complement(4137069..4137731) 1 NC_000913.2 fructose-6-phosphate aldolase 2 4137731 fsaB 948439 fsaB Escherichia coli K12 fructose-6-phosphate aldolase 2 NP_418381.1 4137069 R 83333 CDS YP_026278.1 49176446 948437 complement(4137743..4140244) 1 NC_000913.2 PEP-protein phosphotransferase system enzyme I; GO_process: carbohydrate catabolic process [goid 0016052]; fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component 4140244 ptsA 948437 ptsA Escherichia coli K12 fused predicted PTS enzymes: Hpr component/enzyme I component/enzyme IIA component YP_026278.1 4137743 R 83333 CDS NP_418384.1 16131787 948448 4140553..4141632 1 NC_000913.2 PTS system, fructose-like enzyme II component; predicted enzyme IIC component of PTS 4141632 frwC 948448 frwC Escherichia coli K12 predicted enzyme IIC component of PTS NP_418384.1 4140553 D 83333 CDS NP_418385.1 16131788 948447 4141647..4141967 1 NC_000913.2 PTS system fructose-like IIB component 1; GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIB component of PTS 4141967 frwB 948447 frwB Escherichia coli K12 predicted enzyme IIB component of PTS NP_418385.1 4141647 D 83333 CDS NP_418386.1 16131789 948454 4142018..4144315 1 NC_000913.2 formate acetyltransferase 2; GO_process: anaerobic respiration [goid 0009061]; predicted formate acetyltransferase 2 (pyruvate formate lyase II) 4144315 pflD 948454 pflD Escherichia coli K12 predicted formate acetyltransferase 2 (pyruvate formate lyase II) NP_418386.1 4142018 D 83333 CDS NP_418387.3 49176447 948453 4144281..4145159 1 NC_000913.2 probable pyruvate formate lyase activating enzyme 2; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; pyruvate formate lyase II activase 4145159 pflC 948453 pflC Escherichia coli K12 pyruvate formate lyase II activase NP_418387.3 4144281 D 83333 CDS NP_418388.1 16131791 948452 4145161..4145502 1 NC_000913.2 PTS system fructose-like IIB component 2; GO_process: carbohydrate catabolic process [goid 0016052]; predicted enzyme IIB component of PTS 4145502 frwD 948452 frwD Escherichia coli K12 predicted enzyme IIB component of PTS NP_418388.1 4145161 D 83333 CDS NP_418389.1 16131792 948451 complement(4145489..4146340) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 4146340 yijO 948451 yijO Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418389.1 4145489 R 83333 CDS NP_418390.1 16131793 948458 complement(4146555..4148288) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4148288 yijP 948458 yijP Escherichia coli K12 conserved inner membrane protein NP_418390.1 4146555 R 83333 CDS NP_418391.1 16131794 948457 complement(4148470..4151121) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: fermentation [goid 0006113]; GO_process: tricarboxylic acid cycle [goid 0006099]; phosphoenolpyruvate carboxylase 4151121 ppc 948457 ppc Escherichia coli K12 phosphoenolpyruvate carboxylase NP_418391.1 4148470 R 83333 CDS NP_418392.1 16131795 948456 complement(4151719..4152870) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; acetylornithine deacetylase 4152870 argE 948456 argE Escherichia coli K12 acetylornithine deacetylase NP_418392.1 4151719 R 83333 CDS NP_418393.1 16131796 948455 4153024..4154028 1 NC_000913.2 N-acetyl-gamma-glutamylphosphate reductase; GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding 4154028 argC 948455 argC Escherichia coli K12 N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding NP_418393.1 4153024 D 83333 CDS NP_418394.3 145698337 948464 4154036..4154812 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; acetylglutamate kinase 4154812 argB 948464 argB Escherichia coli K12 acetylglutamate kinase NP_418394.3 4154036 D 83333 CDS NP_418395.1 16131798 948463 4154873..4156246 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; argininosuccinate lyase 4156246 argH 948463 argH Escherichia coli K12 argininosuccinate lyase NP_418395.1 4154873 D 83333 CDS NP_418396.1 16131799 948462 4156513..4157430 1 NC_000913.2 activator, hydrogen peroxide-inducible genes; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 4157430 oxyR 948462 oxyR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418396.1 4156513 D 83333 CDS NP_418397.2 90111670 948461 complement(4157413..4158813) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleotide-sugar biosynthetic process [goid 0009226]; pyridine nucleotide transhydrogenase, soluble 4158813 sthA 948461 sthA Escherichia coli K12 pyridine nucleotide transhydrogenase, soluble NP_418397.2 4157413 R 83333 CDS NP_418398.2 145698338 948460 4159147..4159794 1 NC_000913.2 DNA-binding transcriptional repressor 4159794 fabR 948460 fabR Escherichia coli K12 DNA-binding transcriptional repressor NP_418398.2 4159147 D 83333 CDS NP_418399.1 16131802 948459 4159794..4160153 1 NC_000913.2 conserved inner membrane protein 4160153 yijD 948459 yijD Escherichia coli K12 conserved inner membrane protein NP_418399.1 4159794 D 83333 CDS NP_418400.1 16131803 947143 complement(4160193..4161293) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; tRNA (uracil-5-)-methyltransferase 4161293 trmA 947143 trmA Escherichia coli K12 tRNA (uracil-5-)-methyltransferase NP_418400.1 4160193 R 83333 CDS NP_418401.1 16131804 948468 4161662..4163506 1 NC_000913.2 outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; vitamin B12/cobalamin outer membrane transporter 4163506 btuB 948468 btuB Escherichia coli K12 vitamin B12/cobalamin outer membrane transporter NP_418401.1 4161662 D 83333 CDS NP_418402.2 90111671 948467 4163451..4164308 1 NC_000913.2 glutamate racemase, required for biosynthesis of D-glutamate and peptidoglycan; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; glutamate racemase 4164308 murI 948467 murI Escherichia coli K12 glutamate racemase NP_418402.2 4163451 D 83333 CDS NP_418403.1 16131806 948470 4170080..4171108 1 NC_000913.2 UDP-N-acetylenolpyruvoylglucosamine reductase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cytoplasm [goid 0005737]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding 4171108 murB 948470 murB Escherichia coli K12 UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding NP_418403.1 4170080 D 83333 CDS NP_418404.1 16131807 948469 4171105..4172070 1 NC_000913.2 biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: biotin biosynthetic process [goid 0009102]; GO_process: transcription [goid 0006350]; bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor, bio-5'-AMP-binding 4172070 birA 948469 birA Escherichia coli K12 bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor, bio-5'-AMP-binding NP_418404.1 4171105 D 83333 CDS NP_418405.1 16131808 948479 complement(4172099..4173049) 1 NC_000913.2 GO_process: coenzyme A biosynthetic process [goid 0015937]; pantothenate kinase 4173049 coaA 948479 coaA Escherichia coli K12 pantothenate kinase NP_418405.1 4172099 R 83333 CDS NP_418407.1 16131810 948482 4173967..4175151 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; GO_process: response to osmotic stress [goid 0006970]; protein chain elongation factor EF-Tu (duplicate of tufA) 4175151 tufB 948482 tufB Escherichia coli K12 protein chain elongation factor EF-Tu (duplicate of tufA) NP_418407.1 4173967 D 83333 CDS NP_418408.1 16131811 948486 4175381..4175764 1 NC_000913.2 preprotein translocase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; preprotein translocase membrane subunit 4175764 secE 948486 secE Escherichia coli K12 preprotein translocase membrane subunit NP_418408.1 4175381 D 83333 CDS NP_418409.1 16131812 948485 4175766..4176311 1 NC_000913.2 component in transcription antitermination; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; transcription termination factor 4176311 nusG 948485 nusG Escherichia coli K12 transcription termination factor NP_418409.1 4175766 D 83333 CDS NP_418410.1 16131813 948484 4176470..4176898 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L11 4176898 rplK 948484 rplK Escherichia coli K12 50S ribosomal subunit protein L11 NP_418410.1 4176470 D 83333 CDS NP_418411.1 16131814 948483 4176902..4177606 1 NC_000913.2 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; GO_process: translational attenuation [goid 0009386]; 50S ribosomal subunit protein L1 4177606 rplA 948483 rplA Escherichia coli K12 50S ribosomal subunit protein L1 NP_418411.1 4176902 D 83333 CDS NP_418412.1 16131815 948490 4178019..4178516 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L10 4178516 rplJ 948490 rplJ Escherichia coli K12 50S ribosomal subunit protein L10 NP_418412.1 4178019 D 83333 CDS NP_418413.1 16131816 948489 4178583..4178948 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L7/L12 4178948 rplL 948489 rplL Escherichia coli K12 50S ribosomal subunit protein L7/L12 NP_418413.1 4178583 D 83333 CDS NP_418414.1 16131817 948488 4179268..4183296 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, beta subunit 4183296 rpoB 948488 rpoB Escherichia coli K12 RNA polymerase, beta subunit NP_418414.1 4179268 D 83333 CDS NP_418415.1 16131818 948487 4183373..4187596 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; RNA polymerase, beta prime subunit 4187596 rpoC 948487 rpoC Escherichia coli K12 RNA polymerase, beta prime subunit NP_418415.1 4183373 D 83333 CDS NP_418416.1 16131819 948495 4187809..4188348 1 NC_000913.2 heat shock protein htrC; GO_process: response to temperature stimulus [goid 0009266]; heat shock protein 4188348 yjaZ 948495 yjaZ Escherichia coli K12 heat shock protein NP_418416.1 4187809 D 83333 CDS NP_418417.1 16131820 948494 complement(4188758..4189891) 1 NC_000913.2 GO_process: thiamin biosynthetic process [goid 0009228]; thiamin biosynthesis ThiGH complex subunit 4189891 thiH 948494 thiH Escherichia coli K12 thiamin biosynthesis ThiGH complex subunit NP_418417.1 4188758 R 83333 CDS NP_418418.2 33347812 948493 complement(4189888..4190658) 1 NC_000913.2 thiamin (thiazole moiety) biosynthesis protein; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin biosynthesis ThiGH complex subunit 4190658 thiG 948493 thiG Escherichia coli K12 thiamin biosynthesis ThiGH complex subunit NP_418418.2 4189888 R 83333 CDS YP_026279.1 49176448 2847702 complement(4190660..4190860) 1 NC_000913.2 sulfur carrier protein; sulphur carrier protein 4190860 thiS 2847702 thiS Escherichia coli K12 sulphur carrier protein YP_026279.1 4190660 R 83333 CDS NP_418420.4 90111672 948500 complement(4190844..4191599) 1 NC_000913.2 adenylyltransferase; GO_process: thiamin biosynthetic process [goid 0009228]; thiamin (thiazole moiety) biosynthesis protein 4191599 thiF 948500 thiF Escherichia coli K12 thiamin (thiazole moiety) biosynthesis protein NP_418420.4 4190844 R 83333 CDS NP_418421.1 16131823 948491 complement(4191592..4192227) 1 NC_000913.2 thiamin-phosphate synthase (thiamine-phosphate pyrophosphorylase); GO_process: thiamin biosynthetic process [goid 0009228]; thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) 4192227 thiE 948491 thiE Escherichia coli K12 thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) NP_418421.1 4191592 R 83333 CDS NP_418422.1 16131824 948492 complement(4192227..4194122) 1 NC_000913.2 GO_process: thiamin biosynthetic process [goid 0009228]; thiamin (pyrimidine moiety) biosynthesis protein 4194122 thiC 948492 thiC Escherichia coli K12 thiamin (pyrimidine moiety) biosynthesis protein NP_418422.1 4192227 R 83333 CDS NP_418423.1 16131825 948496 complement(4194355..4194831) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; stationary phase protein, binds sigma 70 RNA polymerase subunit 4194831 rsd 948496 rsd Escherichia coli K12 stationary phase protein, binds sigma 70 RNA polymerase subunit NP_418423.1 4194355 R 83333 CDS YP_026280.1 49176450 948498 4194926..4195699 1 NC_000913.2 NADH pyrophosphatase 4195699 nudC 948498 nudC Escherichia coli K12 NADH pyrophosphatase YP_026280.1 4194926 D 83333 CDS NP_418425.1 16131827 948497 4195739..4196803 1 NC_000913.2 uroporphyrinogen decarboxylase 4196803 hemE 948497 hemE Escherichia coli K12 uroporphyrinogen decarboxylase NP_418425.1 4195739 D 83333 CDS NP_418426.2 90111673 948502 4196813..4197484 1 NC_000913.2 endonuclease V (deoxyinosine 3'endoduclease); GO_process: DNA catabolic process [goid 0006308]; endonuclease V 4197484 nfi 948502 nfi Escherichia coli K12 endonuclease V NP_418426.2 4196813 D 83333 CDS NP_418427.1 16131829 948501 4197527..4198117 1 NC_000913.2 conserved protein 4198117 yjaG 948501 yjaG Escherichia coli K12 conserved protein NP_418427.1 4197527 D 83333 CDS NP_418428.1 16131830 948499 4198304..4198576 1 NC_000913.2 DNA-binding protein HU-alpha (HU-2); GO_component: cytoplasm [goid 0005737]; HU, DNA-binding transcriptional regulator, alpha subunit 4198576 hupA 948499 hupA Escherichia coli K12 HU, DNA-binding transcriptional regulator, alpha subunit NP_418428.1 4198304 D 83333 CDS NP_418429.1 16131831 948508 4198589..4199284 1 NC_000913.2 conserved protein 4199284 yjaH 948508 yjaH Escherichia coli K12 conserved protein NP_418429.1 4198589 D 83333 CDS NP_418430.2 90111674 948507 complement(4199286..4199711) 1 NC_000913.2 GO_component: periplasmic space [goid 0042597]; Zn-binding periplasmic protein 4199711 zraP 948507 zraP Escherichia coli K12 Zn-binding periplasmic protein NP_418430.2 4199286 R 83333 CDS NP_418431.1 16131833 948506 4199949..4201346 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: fermentation [goid 0006113]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with ZraR 4201346 zraS 948506 zraS Escherichia coli K12 sensory histidine kinase in two-component regulatory system with ZraR NP_418431.1 4199949 D 83333 CDS NP_418432.1 16131834 948505 4201343..4202668 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: fermentation [goid 0006113]; GO_process: transcription [goid 0006350]; fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein 4202668 zraR 948505 zraR Escherichia coli K12 fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein NP_418432.1 4201343 D 83333 CDS NP_418433.1 16131835 948504 complement(4202665..4203954) 1 NC_000913.2 phosphoribosylglycinamide synthetase = GAR synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase 4203954 purD 948504 purD Escherichia coli K12 phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase NP_418433.1 4202665 R 83333 CDS NP_418434.1 16131836 948503 complement(4203966..4205555) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase 4205555 purH 948503 purH Escherichia coli K12 fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase NP_418434.1 4203966 R 83333 CDS NP_418435.1 16131837 948515 4211257..4211640 1 NC_000913.2 conserved protein 4211640 yjaA 948515 yjaA Escherichia coli K12 conserved protein NP_418435.1 4211257 D 83333 CDS NP_418436.1 16131838 948514 complement(4211703..4212146) 1 NC_000913.2 predicted acetyltransferase 4212146 yjaB 948514 yjaB Escherichia coli K12 predicted acetyltransferase NP_418436.1 4211703 R 83333 CDS NP_418437.1 16131839 948513 4212303..4213232 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: methionine biosynthetic process [goid 0009086]; homoserine O-transsuccinylase 4213232 metA 948513 metA Escherichia coli K12 homoserine O-transsuccinylase NP_418437.1 4212303 D 83333 CDS NP_418438.1 16131840 948512 4213501..4215102 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glyoxylate cycle [goid 0006097]; malate synthase A 4215102 aceB 948512 aceB Escherichia coli K12 malate synthase A NP_418438.1 4213501 D 83333 CDS NP_418439.1 16131841 948517 4215132..4216436 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glyoxylate cycle [goid 0006097]; isocitrate lyase 4216436 aceA 948517 aceA Escherichia coli K12 isocitrate lyase NP_418439.1 4215132 D 83333 CDS NP_418440.1 16131842 944797 4216619..4218355 1 NC_000913.2 GO_process: glyoxylate cycle [goid 0006097]; GO_process: protein modification [goid 0006464]; isocitrate dehydrogenase kinase/phosphatase 4218355 aceK 944797 aceK Escherichia coli K12 isocitrate dehydrogenase kinase/phosphatase NP_418440.1 4216619 D 83333 CDS NP_418441.1 16131843 944933 complement(4218324..4220510) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; ankyrin repeat protein, function unknown 4220510 arpA 944933 arpA Escherichia coli K12 ankyrin repeat protein, function unknown NP_418441.1 4218324 R 83333 CDS NP_418442.2 90111675 948524 complement(4220827..4221651) 1 NC_000913.2 repressor of aceBA operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glyoxylate cycle [goid 0006097]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 4221651 iclR 948524 iclR Escherichia coli K12 DNA-binding transcriptional repressor NP_418442.2 4220827 R 83333 CDS NP_418443.1 16131845 948522 4221851..4225534 1 NC_000913.2 B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF; GO_process: methionine biosynthetic process [goid 0009086]; GO_process: S-adenosylmethionine biosynthetic process [goid 0006556]; homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent 4225534 metH 948522 metH Escherichia coli K12 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent NP_418443.1 4221851 D 83333 CDS NP_418444.1 16131846 948521 4225754..4227385 1 NC_000913.2 putative alpha helix protein; predicted transporter 4227385 yjbB 948521 yjbB Escherichia coli K12 predicted transporter NP_418444.1 4225754 D 83333 CDS NP_418445.1 16131847 948520 complement(4227476..4228165) 1 NC_000913.2 peptidase E, a dipeptidase where amino-terminal residue is aspartate; (alpha)-aspartyl dipeptidase 4228165 pepE 948520 pepE Escherichia coli K12 (alpha)-aspartyl dipeptidase NP_418445.1 4227476 R 83333 CDS NP_418446.1 16131848 948519 4228377..4229249 1 NC_000913.2 23S rRNA pseudouridine synthase 4229249 rluF 948519 rluF Escherichia coli K12 23S rRNA pseudouridine synthase NP_418446.1 4228377 D 83333 CDS NP_418447.1 16131849 948518 complement(4229382..4229654) 1 NC_000913.2 conserved protein 4229654 pagB 948518 pagB Escherichia coli K12 conserved protein NP_418447.1 4229382 R 83333 CDS NP_418448.1 16131850 948531 complement(4229907..4231256) 1 NC_000913.2 aspartokinase III, lysine sensitive; GO_component: cytoplasm [goid 0005737]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; GO_process: homoserine biosynthetic process [goid 0009090]; aspartokinase III 4231256 lysC 948531 lysC Escherichia coli K12 aspartokinase III NP_418448.1 4229907 R 83333 CDS NP_418449.1 16131851 948535 4231781..4233430 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; glucosephosphate isomerase 4233430 pgi 948535 pgi Escherichia coli K12 glucosephosphate isomerase NP_418449.1 4231781 D 83333 CDS NP_418450.1 16131852 948534 4233929..4234171 1 NC_000913.2 predicted protein 4234171 yjbE 948534 yjbE Escherichia coli K12 predicted protein NP_418450.1 4233929 D 83333 CDS NP_418451.4 90111676 948533 4234285..4234923 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted lipoprotein 4234923 yjbF 948533 yjbF Escherichia coli K12 predicted lipoprotein NP_418451.4 4234285 D 83333 CDS NP_418452.1 16131854 948526 4234920..4235657 1 NC_000913.2 conserved protein 4235657 yjbG 948526 yjbG Escherichia coli K12 conserved protein NP_418452.1 4234920 D 83333 CDS NP_418453.1 16131855 948527 4235657..4237753 1 NC_000913.2 predicted porin 4237753 yjbH 948527 yjbH Escherichia coli K12 predicted porin NP_418453.1 4235657 D 83333 CDS YP_001165332.1 145698339 5061528 complement(4237800..4238078) 1 NC_000913.2 hypothetical protein, no homologs 4238078 yjbT 5061528 yjbT Escherichia coli K12 hypothetical protein, no homologs YP_001165332.1 4237800 R 83333 CDS NP_418454.1 16131856 948528 4238348..4238758 1 NC_000913.2 predicted phosphate starvation inducible protein 4238758 psiE 948528 psiE Escherichia coli K12 predicted phosphate starvation inducible protein NP_418454.1 4238348 D 83333 CDS NP_418455.1 16131857 948529 complement(4238802..4240277) 1 NC_000913.2 xylose-proton symport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: D-xylose transport [goid 0015753]; D-xylose transporter 4240277 xylE 948529 xylE Escherichia coli K12 D-xylose transporter NP_418455.1 4238802 R 83333 CDS NP_418456.1 16131858 948530 complement(4240649..4241539) 1 NC_000913.2 part of maltose permease, inner membrane; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose transporter subunit 4241539 malG 948530 malG Escherichia coli K12 maltose transporter subunit NP_418456.1 4240649 R 83333 CDS NP_418457.1 16131859 948532 complement(4241554..4243098) 1 NC_000913.2 part of maltose permease, periplasmic; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose transporter subunit 4243098 malF 948532 malF Escherichia coli K12 maltose transporter subunit NP_418457.1 4241554 R 83333 CDS NP_418458.1 16131860 948538 complement(4243252..4244442) 1 NC_000913.2 periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: protein folding [goid 0006457]; maltose transporter subunit 4244442 malE 948538 malE Escherichia coli K12 maltose transporter subunit NP_418458.1 4243252 R 83333 CDS NP_418459.1 16131861 948537 4244807..4245922 1 NC_000913.2 ATP-binding component of transport system for maltose; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein 4245922 malK 948537 malK Escherichia coli K12 fused maltose transport subunit, ATP-binding component of ABC superfamily/regulatory protein NP_418459.1 4244807 D 83333 CDS NP_418460.1 16131862 948548 4245994..4247334 1 NC_000913.2 phage lambda receptor protein; maltose high-affinity receptor; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; maltose outer membrane porin (maltoporin) 4247334 lamB 948548 lamB Escherichia coli K12 maltose outer membrane porin (maltoporin) NP_418460.1 4245994 D 83333 CDS NP_418461.1 16131863 948547 4247577..4248497 1 NC_000913.2 periplasmic protein of mal regulon; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; maltose regulon periplasmic protein 4248497 malM 948547 malM Escherichia coli K12 maltose regulon periplasmic protein NP_418461.1 4247577 D 83333 CDS b4038 948546 join(4248726..4248908,4248908..4248982,4248984..4250306) 1 NC_000913.2 conserved protein; 4250306 yjbI 948546 yjbI Escherichia coli K12 4248726 D 83333 CDS NP_418463.4 90111677 948545 4250529..4251026 1 NC_000913.2 chorismate lyase; GO_component: cytoplasm [goid 0005737]; GO_process: aerobic respiration [goid 0009060]; chorismate pyruvate lyase 4251026 ubiC 948545 ubiC Escherichia coli K12 chorismate pyruvate lyase NP_418463.4 4250529 D 83333 CDS NP_418464.1 16131866 948540 4251039..4251911 1 NC_000913.2 4-hydroxybenzoate-octaprenyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: aerobic respiration [goid 0009060]; p-hydroxybenzoate octaprenyltransferase 4251911 ubiA 948540 ubiA Escherichia coli K12 p-hydroxybenzoate octaprenyltransferase NP_418464.1 4251039 D 83333 CDS NP_418465.4 90111678 948541 complement(4252066..4254489) 1 NC_000913.2 glycerol-3-phosphate acyltransferase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; glycerol-3-phosphate O-acyltransferase 4254489 plsB 948541 plsB Escherichia coli K12 glycerol-3-phosphate O-acyltransferase NP_418465.4 4252066 R 83333 CDS NP_418466.1 16131868 948543 4254660..4255028 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; diacylglycerol kinase 4255028 dgkA 948543 dgkA Escherichia coli K12 diacylglycerol kinase NP_418466.1 4254660 D 83333 CDS NP_418467.1 16131869 948544 4255138..4255746 1 NC_000913.2 regulator for SOS(lexA) regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: DNA repair [goid 0006281]; GO_process: transcription [goid 0006350]; GO_process: SOS response [goid 0009432]; DNA-binding transcriptional repressor of SOS regulon 4255746 lexA 948544 lexA Escherichia coli K12 DNA-binding transcriptional repressor of SOS regulon NP_418467.1 4255138 D 83333 CDS NP_418468.3 162135919 948554 4255765..4257144 1 NC_000913.2 DNA-damage-inducible protein F; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; DNA-damage-inducible SOS response protein 4257144 dinF 948554 dinF Escherichia coli K12 DNA-damage-inducible SOS response protein NP_418468.3 4255765 D 83333 CDS NP_418469.1 16131871 948553 4257260..4257469 1 NC_000913.2 predicted stress response protein 4257469 yjbJ 948553 yjbJ Escherichia coli K12 predicted stress response protein NP_418469.1 4257260 D 83333 CDS NP_418470.4 90111679 948552 complement(4257511..4258026) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, Zn(II)-binding 4258026 zur 948552 zur Escherichia coli K12 DNA-binding transcriptional repressor, Zn(II)-binding NP_418470.4 4257511 R 83333 CDS NP_418471.1 16131873 948551 4258344..4258598 1 NC_000913.2 predicted protein 4258598 yjbL 948551 yjbL Escherichia coli K12 predicted protein NP_418471.1 4258344 D 83333 CDS NP_418472.1 16131874 948550 4258622..4259329 1 NC_000913.2 predicted protein 4259329 yjbM 948550 yjbM Escherichia coli K12 predicted protein NP_418472.1 4258622 D 83333 CDS NP_418473.2 145698340 948558 4259737..4260729 1 NC_000913.2 tRNA-dihydrouridine synthase A 4260729 dusA 948558 dusA Escherichia coli K12 tRNA-dihydrouridine synthase A NP_418473.2 4259737 D 83333 CDS NP_418474.4 90111680 948557 4260863..4261105 1 NC_000913.2 phage shock protein G 4261105 pspG 948557 pspG Escherichia coli K12 phage shock protein G NP_418474.4 4260863 D 83333 CDS NP_418475.1 16131877 948556 complement(4261271..4262254) 1 NC_000913.2 quinone oxidoreductase; GO_function: electron carrier activity [goid 0009055]; quinone oxidoreductase, NADPH-dependent 4262254 qor 948556 qor Escherichia coli K12 quinone oxidoreductase, NADPH-dependent NP_418475.1 4261271 R 83333 CDS NP_418476.1 16131878 948555 4262337..4263752 1 NC_000913.2 replicative DNA helicase; part of primosome; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; replicative DNA helicase 4263752 dnaB 948555 dnaB Escherichia coli K12 replicative DNA helicase NP_418476.1 4262337 D 83333 CDS NP_418477.1 16131879 948564 4263805..4264884 1 NC_000913.2 alanine racemase 1; GO_process: alanine biosynthetic process [goid 0006523]; alanine racemase 1, PLP-binding, biosynthetic 4264884 alr 948564 alr Escherichia coli K12 alanine racemase 1, PLP-binding, biosynthetic NP_418477.1 4263805 D 83333 CDS NP_418478.1 16131880 948563 4265137..4266330 1 NC_000913.2 tyrosine aminotransferase, tyrosine repressible; GO_component: cytoplasm [goid 0005737]; GO_process: L-phenylalanine biosynthetic process [goid 0009094]; GO_process: tyrosine biosynthetic process [goid 0006571]; GO_process: leucine biosynthetic process [goid 0009098]; tyrosine aminotransferase, tyrosine-repressible, PLP-dependent 4266330 tyrB 948563 tyrB Escherichia coli K12 tyrosine aminotransferase, tyrosine-repressible, PLP-dependent NP_418478.1 4265137 D 83333 CDS YP_001165333.1 145698341 5061529 complement(4266832..4267035) 1 NC_000913.2 hypothetical protein 4267035 yjbS 5061529 yjbS Escherichia coli K12 hypothetical protein YP_001165333.1 4266832 R 83333 CDS NP_418479.1 16131881 948562 4267437..4268150 1 NC_000913.2 diadenosine tetraphosphatase; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; acid phosphatase/phosphotransferase, class B, non-specific 4268150 aphA 948562 aphA Escherichia coli K12 acid phosphatase/phosphotransferase, class B, non-specific NP_418479.1 4267437 D 83333 CDS NP_418480.1 16131882 948561 4268261..4268677 1 NC_000913.2 conserved protein 4268677 yjbQ 948561 yjbQ Escherichia coli K12 conserved protein NP_418480.1 4268261 D 83333 CDS NP_418481.1 16131883 948560 4268681..4269037 1 NC_000913.2 conserved protein 4269037 yjbR 948560 yjbR Escherichia coli K12 conserved protein NP_418481.1 4268681 D 83333 CDS NP_418482.1 16131884 948559 complement(4269072..4271894) 1 NC_000913.2 excision nuclease subunit A; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; GO_process: response to radiation [goid 0009314]; GO_process: SOS response [goid 0009432]; ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 4271894 uvrA 948559 uvrA Escherichia coli K12 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC NP_418482.1 4269072 R 83333 CDS NP_418483.1 16131885 948570 4272148..4272684 1 NC_000913.2 ssDNA-binding protein; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; GO_process: SOS response [goid 0009432]; single-stranded DNA-binding protein 4272684 ssb 948570 ssb Escherichia coli K12 single-stranded DNA-binding protein NP_418483.1 4272148 D 83333 CDS NP_418484.4 90111681 948569 complement(4272783..4273064) 1 NC_000913.2 predicted inner membrane protein 4273064 yjcB 948569 yjcB Escherichia coli K12 predicted inner membrane protein NP_418484.4 4272783 R 83333 CDS NP_418485.1 16131887 948568 4273494..4275080 1 NC_000913.2 predicted signal transduction protein (EAL domain containing protein) 4275080 yjcC 948568 yjcC Escherichia coli K12 predicted signal transduction protein (EAL domain containing protein) NP_418485.1 4273494 D 83333 CDS NP_418486.1 16131888 948567 complement(4275083..4275406) 1 NC_000913.2 regulation of superoxide response regulon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual regulator 4275406 soxS 948567 soxS Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418486.1 4275083 R 83333 CDS NP_418487.1 16131889 948566 4275492..4275956 1 NC_000913.2 redox-sensing activator of soxS; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; GO_process: xenobiotic metabolic process [goid 0006805]; DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing 4275956 soxR 948566 soxR Escherichia coli K12 DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing NP_418487.1 4275492 D 83333 CDS NP_418488.1 16131890 948565 4276502..4277851 1 NC_000913.2 predicted permease 4277851 yjcD 948565 yjcD Escherichia coli K12 predicted permease NP_418488.1 4276502 D 83333 CDS NP_418489.1 16131891 948577 4278003..4279652 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted cation/proton antiporter 4279652 yjcE 948577 yjcE Escherichia coli K12 predicted cation/proton antiporter NP_418489.1 4278003 D 83333 CDS NP_418490.1 16131892 948576 complement(4279806..4281098) 1 NC_000913.2 conserved protein 4281098 yjcF 948576 yjcF Escherichia coli K12 conserved protein NP_418490.1 4279806 R 83333 CDS NP_418491.1 16131893 948575 complement(4281276..4282925) 1 NC_000913.2 acetate permease also transports glycolate with a rate high enough to support growth on this carbon source; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; acetate transporter 4282925 actP 948575 actP Escherichia coli K12 acetate transporter NP_418491.1 4281276 R 83333 CDS NP_418492.1 16131894 948574 complement(4282922..4283236) 1 NC_000913.2 conserved inner membrane protein involved in acetate transport 4283236 yjcH 948574 yjcH Escherichia coli K12 conserved inner membrane protein involved in acetate transport NP_418492.1 4282922 R 83333 CDS NP_418493.1 16131895 948572 complement(4283436..4285394) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: acetate catabolic process [goid 0045733]; acetyl-CoA synthetase 4285394 acs 948572 acs Escherichia coli K12 acetyl-CoA synthetase NP_418493.1 4283436 R 83333 CDS NP_418494.1 16131896 948571 4285787..4287223 1 NC_000913.2 periplasmic cytochrome c(552): plays a role in nitrite reduction; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrite reductase, formate-dependent, cytochrome 4287223 nrfA 948571 nrfA Escherichia coli K12 nitrite reductase, formate-dependent, cytochrome NP_418494.1 4285787 D 83333 CDS NP_418495.2 90111682 948573 4287268..4287834 1 NC_000913.2 formate-dependent nitrite reductase; a penta-haeme cytochrome c; GO_component: periplasmic space [goid 0042597]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; nitrite reductase, formate-dependent, penta-heme cytochrome c 4287834 nrfB 948573 nrfB Escherichia coli K12 nitrite reductase, formate-dependent, penta-heme cytochrome c NP_418495.2 4287268 D 83333 CDS NP_418496.1 16131898 948581 4287831..4288502 1 NC_000913.2 formate-dependent nitrite reductase; Fe-S centers; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: anaerobic respiration [goid 0009061]; formate-dependent nitrite reductase, 4Fe4S subunit 4288502 nrfC 948581 nrfC Escherichia coli K12 formate-dependent nitrite reductase, 4Fe4S subunit NP_418496.1 4287831 D 83333 CDS NP_418497.1 16131899 948580 4288499..4289455 1 NC_000913.2 formate-dependent nitrate reductase complex; transmembrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; formate-dependent nitrite reductase, membrane subunit 4289455 nrfD 948580 nrfD Escherichia coli K12 formate-dependent nitrite reductase, membrane subunit NP_418497.1 4288499 D 83333 CDS NP_418498.1 16131900 948579 4289535..4291193 1 NC_000913.2 formate-dependent nitrite reductase; possible assembly function; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE 4291193 nrfE 948579 nrfE Escherichia coli K12 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE NP_418498.1 4289535 D 83333 CDS NP_418499.1 16131901 948578 4291186..4291569 1 NC_000913.2 part of formate-dependent nitrite reductase complex; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF 4291569 nrfF 948578 nrfF Escherichia coli K12 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF NP_418499.1 4291186 D 83333 CDS NP_418500.1 16131902 948592 4291566..4292162 1 NC_000913.2 part of formate-dependent nitrite reductase complex; GO_process: anaerobic respiration [goid 0009061]; GO_process: cytochrome complex assembly [goid 0017004]; GO_process: protein folding [goid 0006457]; heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG 4292162 nrfG 948592 nrfG Escherichia coli K12 heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG NP_418500.1 4291566 D 83333 CDS NP_418501.1 16131903 948591 4292504..4293817 1 NC_000913.2 glutamate-aspartate symport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glutamate biosynthetic process [goid 0006537]; GO_process: aspartate biosynthetic process [goid 0006532]; glutamate/aspartate:proton symporter 4293817 gltP 948591 gltP Escherichia coli K12 glutamate/aspartate:proton symporter NP_418501.1 4292504 D 83333 CDS NP_418502.1 16131904 948586 complement(4294459..4295148) 1 NC_000913.2 conserved protein 4295148 yjcO 948586 yjcO Escherichia coli K12 conserved protein NP_418502.1 4294459 R 83333 CDS NP_418503.1 16131905 948584 complement(4295242..4297389) 1 NC_000913.2 selenopolypeptide subunit of formate dehydrogenase H; GO_function: electron donor activity [goid 0009053]; GO_process: fermentation [goid 0006113]; formate dehydrogenase-H, selenopolypeptide subunit 4297389 fdhF 948584 fdhF Escherichia coli K12 formate dehydrogenase-H, selenopolypeptide subunit NP_418503.1 4295242 R 83333 CDS NP_418504.1 16131906 948583 complement(4297587..4299053) 1 NC_000913.2 putative enzyme; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane factor of efflux pump 4299053 mdtP 948583 mdtP Escherichia coli K12 predicted outer membrane factor of efflux pump NP_418504.1 4297587 R 83333 CDS NP_418505.2 90111683 948582 complement(4299050..4301101) 1 NC_000913.2 putative enzyme; predicted multidrug efflux system component 4301101 mdtO 948582 mdtO Escherichia coli K12 predicted multidrug efflux system component NP_418505.2 4299050 R 83333 CDS NP_418506.1 16131908 948598 complement(4301101..4302132) 1 NC_000913.2 putative membrane protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted membrane fusion protein of efflux pump 4302132 mdtN 948598 mdtN Escherichia coli K12 predicted membrane fusion protein of efflux pump NP_418506.1 4301101 R 83333 CDS YP_001165334.1 145698342 5061530 complement(4302151..4302426) 1 NC_000913.2 hypothetical protein 4302426 ytcA 5061530 ytcA Escherichia coli K12 hypothetical protein YP_001165334.1 4302151 R 83333 CDS NP_418507.2 90111684 948597 complement(4302635..4304620) 1 NC_000913.2 GO_process: sulfur metabolic process [goid 0006790]; predicted alkyl sulfatase 4304620 yjcS 948597 yjcS Escherichia coli K12 predicted alkyl sulfatase NP_418507.2 4302635 R 83333 CDS NP_418508.1 16131910 948596 complement(4304893..4305822) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; D-allose kinase 4305822 alsK 948596 alsK Escherichia coli K12 D-allose kinase NP_418508.1 4304893 R 83333 CDS NP_418509.1 16131911 948595 complement(4305806..4306501) 1 NC_000913.2 allulose-6-phosphate 3-epimerase 4306501 alsE 948595 alsE Escherichia coli K12 allulose-6-phosphate 3-epimerase NP_418509.1 4305806 R 83333 CDS NP_418510.1 16131912 948594 complement(4306512..4307492) 1 NC_000913.2 membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; D-allose transporter subunit 4307492 alsC 948594 alsC Escherichia coli K12 D-allose transporter subunit NP_418510.1 4306512 R 83333 CDS NP_418511.1 16131913 948593 complement(4307471..4309003) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; fused D-allose transporter subunits of ABC superfamily: ATP-binding components 4309003 alsA 948593 alsA Escherichia coli K12 fused D-allose transporter subunits of ABC superfamily: ATP-binding components NP_418511.1 4307471 R 83333 CDS NP_418512.1 16131914 948604 complement(4309130..4310065) 1 NC_000913.2 periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: carbohydrate catabolic process [goid 0016052]; D-allose transporter subunit 4310065 alsB 948604 alsB Escherichia coli K12 D-allose transporter subunit NP_418512.1 4309130 R 83333 CDS NP_418513.4 90111685 948603 complement(4310124..4311014) 1 NC_000913.2 transcriptional repressor of rpiB expression; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 4311014 rpiR 948603 rpiR Escherichia coli K12 DNA-binding transcriptional repressor NP_418513.4 4310124 R 83333 CDS NP_418514.1 16131916 948602 4311373..4311822 1 NC_000913.2 ribose 5-phosphate isomerase B; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: pentose-phosphate shunt, non-oxidative branch [goid 0009052]; ribose 5-phosphate isomerase B/allose 6-phosphate isomerase 4311822 rpiB 948602 rpiB Escherichia coli K12 ribose 5-phosphate isomerase B/allose 6-phosphate isomerase NP_418514.1 4311373 D 83333 CDS YP_026281.1 49176458 2847754 4311891..4312220 1 NC_000913.2 conserved hypothetical protein conserved in EDL933 and CFT073; on opposite strand of the now deaccessioned phnQ (b4091); conserved protein 4312220 yjdP 2847754 yjdP Escherichia coli K12 conserved protein YP_026281.1 4311891 D 83333 CDS NP_418516.1 16131918 948600 complement(4312367..4313125) 1 NC_000913.2 phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex accessory protein 4313125 phnP 948600 phnP Escherichia coli K12 carbon-phosphorus lyase complex accessory protein NP_418516.1 4312367 R 83333 CDS NP_418517.1 16131919 948599 complement(4313127..4313561) 1 NC_000913.2 putative regulator, phn operon; predicted acyltransferase with acyl-CoA N-acyltransferase domain 4313561 phnO 948599 phnO Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_418517.1 4313127 R 83333 CDS NP_418518.1 16131920 948608 complement(4313548..4314105) 1 NC_000913.2 ATP-binding component of phosphonate transport; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; ribose 1,5-bisphosphokinase 4314105 phnN 948608 phnN Escherichia coli K12 ribose 1,5-bisphosphokinase NP_418518.1 4313548 R 83333 CDS NP_418519.1 16131921 948613 complement(4314105..4315241) 1 NC_000913.2 phosphonate metabolism; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit 4315241 phnM 948613 phnM Escherichia coli K12 carbon-phosphorus lyase complex subunit NP_418519.1 4314105 R 83333 CDS NP_418520.1 16131922 948612 complement(4315238..4315918) 1 NC_000913.2 ATP-binding component of phosphonate transport; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit 4315918 phnL 948612 phnL Escherichia coli K12 carbon-phosphorus lyase complex subunit NP_418520.1 4315238 R 83333 CDS YP_026282.1 49176459 948611 complement(4316029..4316787) 1 NC_000913.2 ATP-binding component of phosphonate transport; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit 4316787 phnK 948611 phnK Escherichia coli K12 carbon-phosphorus lyase complex subunit YP_026282.1 4316029 R 83333 CDS NP_418522.1 16131924 948606 complement(4316784..4317629) 1 NC_000913.2 phosphonate metabolism; carbon-phosphorus lyase complex subunit 4317629 phnJ 948606 phnJ Escherichia coli K12 carbon-phosphorus lyase complex subunit NP_418522.1 4316784 R 83333 CDS NP_418523.1 16131925 948605 complement(4317622..4318686) 1 NC_000913.2 phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit 4318686 phnI 948605 phnI Escherichia coli K12 carbon-phosphorus lyase complex subunit NP_418523.1 4317622 R 83333 CDS NP_418524.1 16131926 948619 complement(4318686..4319270) 1 NC_000913.2 phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit 4319270 phnH 948619 phnH Escherichia coli K12 carbon-phosphorus lyase complex subunit NP_418524.1 4318686 R 83333 CDS NP_418525.1 16131927 948618 complement(4319267..4319719) 1 NC_000913.2 phosphonate metabolism; GO_process: phosphorus metabolic process [goid 0006793]; carbon-phosphorus lyase complex subunit 4319719 phnG 948618 phnG Escherichia coli K12 carbon-phosphorus lyase complex subunit NP_418525.1 4319267 R 83333 CDS NP_418526.1 16131928 948617 complement(4319720..4320445) 1 NC_000913.2 putative transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: phosphorus metabolic process [goid 0006793]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation 4320445 phnF 948617 phnF Escherichia coli K12 predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation NP_418526.1 4319720 R 83333 CDS b4104 948625 complement(join(4320466..4320837,4320828..4321253)) 1 NC_000913.2 phosphonate/organophosphate ester transporter subunit;transport; Transport of small molecules: Anions membrane channel protein component of Pn transporter; membrane component of ABC superfamily; 4321253 phnE 948625 phnE Escherichia coli K12 4320466 R 83333 CDS NP_418529.1 16131931 948624 complement(4321359..4322375) 1 NC_000913.2 periplasmic binding protein component of Pn transporter; periplasmic binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: phosphorus metabolic process [goid 0006793]; phosphonate/organophosphate ester transporter subunit 4322375 phnD 948624 phnD Escherichia coli K12 phosphonate/organophosphate ester transporter subunit NP_418529.1 4321359 R 83333 CDS NP_418530.1 16131932 948623 complement(4322400..4323188) 1 NC_000913.2 ATP-binding component of phosphonate transport; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; phosphonate/organophosphate ester transporter subunit 4323188 phnC 948623 phnC Escherichia coli K12 phosphonate/organophosphate ester transporter subunit NP_418530.1 4322400 R 83333 CDS NP_418531.1 16131933 948622 complement(4323321..4323764) 1 NC_000913.2 conserved protein 4323764 yjdN 948622 yjdN Escherichia coli K12 conserved protein NP_418531.1 4323321 R 83333 CDS NP_418532.1 16131934 948621 complement(4324422..4324757) 1 NC_000913.2 conserved protein 4324757 yjdM 948621 yjdM Escherichia coli K12 conserved protein NP_418532.1 4324422 R 83333 CDS NP_418533.1 16131935 948620 4325158..4327386 1 NC_000913.2 putative vimentin; conserved protein with nucleoside triphosphate hydrolase domain 4327386 yjdA 948620 yjdA Escherichia coli K12 conserved protein with nucleoside triphosphate hydrolase domain NP_418533.1 4325158 D 83333 CDS NP_418534.4 90111687 948633 4327383..4328261 1 NC_000913.2 conserved protein 4328261 yjcZ 948633 yjcZ Escherichia coli K12 conserved protein NP_418534.4 4327383 D 83333 CDS NP_418535.1 16131937 948626 4328525..4330027 1 NC_000913.2 low-affinity transport system; proline permease II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: proline biosynthetic process [goid 0006561]; GO_process: response to osmotic stress [goid 0006970]; proline/glycine betaine transporter 4330027 proP 948626 proP Escherichia coli K12 proline/glycine betaine transporter NP_418535.1 4328525 D 83333 CDS NP_418536.1 16131938 948632 complement(4330204..4331295) 1 NC_000913.2 sensor protein for basR; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with BasR 4331295 basS 948632 basS Escherichia coli K12 sensory histidine kinase in two-component regulatory system with BasR NP_418536.1 4330204 R 83333 CDS NP_418537.1 16131939 948631 complement(4331305..4331973) 1 NC_000913.2 transcriptional regulatory protein, member of 2-component regulatory system; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with BasS 4331973 basR 948631 basR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with BasS NP_418537.1 4331305 R 83333 CDS NP_418538.2 90111688 948629 complement(4331970..4333613) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; predicted metal dependent hydrolase 4333613 eptA 948629 eptA Escherichia coli K12 predicted metal dependent hydrolase NP_418538.2 4331970 R 83333 CDS NP_418539.1 16131941 948628 complement(4333717..4335054) 1 NC_000913.2 putative amino acid/amine transport protein, cryptic; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: putrescine:ornithine antiporter activity [goid 0015496]; arginine:agmatin 4335054 adiC 948628 adiC Escherichia coli K12 arginine:agmatin NP_418539.1 4333717 R 83333 CDS NP_418540.1 16131942 948627 complement(4335191..4335952) 1 NC_000913.2 putative ARAC-type regulatory protein; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 4335952 adiY 948627 adiY Escherichia coli K12 DNA-binding transcriptional activator NP_418540.1 4335191 R 83333 CDS NP_418541.1 16131943 948638 complement(4336277..4338547) 1 NC_000913.2 GO_process: amino acid catabolic process [goid 0009063]; biodegradative arginine decarboxylase 4338547 adiA 948638 adiA Escherichia coli K12 biodegradative arginine decarboxylase NP_418541.1 4336277 R 83333 CDS NP_418542.1 16131944 948637 complement(4338743..4339651) 1 NC_000913.2 regulator of melibiose operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 4339651 melR 948637 melR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418542.1 4338743 R 83333 CDS NP_418543.1 16131945 948636 4339934..4341289 1 NC_000913.2 alpha-galactosidase; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: NAD biosynthetic process [goid 0009435]; alpha-galactosidase, NAD(P)-binding 4341289 melA 948636 melA Escherichia coli K12 alpha-galactosidase, NAD(P)-binding NP_418543.1 4339934 D 83333 CDS NP_418544.1 16131946 948635 4341404..4342813 1 NC_000913.2 melibiose permease II; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; melibiose:sodium symporter 4342813 melB 948635 melB Escherichia coli K12 melibiose:sodium symporter NP_418544.1 4341404 D 83333 CDS NP_418545.1 16131947 948634 complement(4342952..4343581) 1 NC_000913.2 conserved inner membrane protein 4343581 yjdF 948634 yjdF Escherichia coli K12 conserved inner membrane protein NP_418545.1 4342952 R 83333 CDS NP_418546.1 16131948 948642 complement(4343703..4345349) 1 NC_000913.2 fumarase B= fumarate hydratase Class I; anaerobic isozyme; GO_process: tricarboxylic acid cycle [goid 0006099]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; anaerobic class I fumarate hydratase (fumarase B) 4345349 fumB 948642 fumB Escherichia coli K12 anaerobic class I fumarate hydratase (fumarase B) NP_418546.1 4343703 R 83333 CDS NP_418547.1 16131949 948641 complement(4345427..4346767) 1 NC_000913.2 anaerobic dicarboxylate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; C4-dicarboxylate antiporter 4346767 dcuB 948641 dcuB Escherichia coli K12 C4-dicarboxylate antiporter NP_418547.1 4345427 R 83333 CDS NP_418548.1 16131950 948640 complement(4347338..4348057) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: anaerobic respiration [goid 0009061]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with DcuS 4348057 dcuR 948640 dcuR Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with DcuS NP_418548.1 4347338 R 83333 CDS NP_418549.1 16131951 948639 complement(4348054..4349685) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration 4349685 dcuS 948639 dcuS Escherichia coli K12 sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration NP_418549.1 4348054 R 83333 CDS NP_418550.1 16131952 948648 4349866..4350096 1 NC_000913.2 conserved protein 4350096 yjdI 948648 yjdI Escherichia coli K12 conserved protein NP_418550.1 4349866 D 83333 CDS NP_418551.1 16131953 948647 4350108..4350380 1 NC_000913.2 predicted acyltransferase with acyl-CoA N-acyltransferase domain 4350380 yjdJ 948647 yjdJ Escherichia coli K12 predicted acyltransferase with acyl-CoA N-acyltransferase domain NP_418551.1 4350108 D 83333 CDS NP_418552.1 16131954 948646 4350607..4350903 1 NC_000913.2 predicted protein 4350903 yjdK 948646 yjdK Escherichia coli K12 predicted protein NP_418552.1 4350607 D 83333 CDS YP_588474.1 94541131 1450308 4350931..4351104 1 NC_000913.2 GO_component: integral to membrane [goid 0016021]; predicted protein 4351104 yjdO 1450308 yjdO Escherichia coli K12 predicted protein YP_588474.1 4350931 D 83333 CDS NP_418553.1 16131955 948645 complement(4351223..4352740) 1 NC_000913.2 lysine tRNA synthetase, inducible; heat shock protein; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; lysine tRNA synthetase, inducible 4352740 lysU 948645 lysU Escherichia coli K12 lysine tRNA synthetase, inducible NP_418553.1 4351223 R 83333 CDS NP_418554.1 16131956 948644 complement(4352977..4354434) 1 NC_000913.2 putative peptide transporter; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4354434 yjdL 948644 yjdL Escherichia coli K12 predicted transporter NP_418554.1 4352977 R 83333 CDS NP_418555.1 16131957 948643 complement(4354493..4356640) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; lysine decarboxylase 1 4356640 cadA 948643 cadA Escherichia coli K12 lysine decarboxylase 1 NP_418555.1 4354493 R 83333 CDS NP_418556.1 16131958 948654 complement(4356720..4358054) 1 NC_000913.2 transport of lysine/cadaverine; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; predicted lysine/cadaverine transporter 4358054 cadB 948654 cadB Escherichia coli K12 predicted lysine/cadaverine transporter NP_418556.1 4356720 R 83333 CDS NP_418557.1 16131959 948653 complement(4358419..4359957) 1 NC_000913.2 transcriptional activator of cad operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 4359957 cadC 948653 cadC Escherichia coli K12 DNA-binding transcriptional activator NP_418557.1 4358419 R 83333 CDS b4654 5625580 complement(join(4360214..4360294,4360293..4360376)) 1 NC_000913.2 pseudogene, P4-like integrase remnant; 4360376 yjdQ 5625580 yjdQ Escherichia coli K12 4360214 R 83333 CDS NP_418558.2 90111689 948650 complement(4360756..4361331) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 4361331 yjdC 948650 yjdC Escherichia coli K12 predicted transcriptional regulator NP_418558.2 4360756 R 83333 CDS NP_418559.1 16131961 948649 complement(4361368..4363065) 1 NC_000913.2 thiol:disulfide interchange protein; copper tolerance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: sulfur metabolic process [goid 0006790]; GO_process: cytochrome complex assembly [goid 0017004]; fused thiol:disulfide interchange protein: activator of DsbC/conserved protein 4363065 dipZ 948649 dipZ Escherichia coli K12 fused thiol:disulfide interchange protein: activator of DsbC/conserved protein NP_418559.1 4361368 R 83333 CDS NP_418560.1 16131962 948660 complement(4363041..4363379) 1 NC_000913.2 divalent cation tolerance protein; cytochrome c biogenesis; GO_process: cytochrome complex assembly [goid 0017004]; copper binding protein, copper sensitivity 4363379 cutA 948660 cutA Escherichia coli K12 copper binding protein, copper sensitivity NP_418560.1 4363041 R 83333 CDS NP_418561.1 16131963 948659 complement(4363495..4364796) 1 NC_000913.2 anaerobic dicarboxylate transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: carbohydrate catabolic process [goid 0016052]; C4-dicarboxylate antiporter 4364796 dcuA 948659 dcuA Escherichia coli K12 C4-dicarboxylate antiporter NP_418561.1 4363495 R 83333 CDS NP_418562.4 90111690 948658 complement(4364914..4366350) 1 NC_000913.2 aspartate ammonia-lyase (aspartase); GO_component: cytoplasm [goid 0005737]; GO_process: amino acid metabolic process [goid 0006520]; GO_process: asparagine biosynthetic process [goid 0006529]; GO_process: lysine biosynthetic process via diaminopimelate [goid 0009089]; aspartate ammonia-lyase 4366350 aspA 948658 aspA Escherichia coli K12 aspartate ammonia-lyase NP_418562.4 4364914 R 83333 CDS NP_418564.2 90111691 948657 4366687..4367163 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; inner membrane protein 4367163 fxsA 948657 fxsA Escherichia coli K12 inner membrane protein NP_418564.2 4366687 D 83333 CDS NP_418565.1 16131966 948656 complement(4367179..4368435) 1 NC_000913.2 putative transport; predicted transporter 4368435 yjeH 948656 yjeH Escherichia coli K12 predicted transporter NP_418565.1 4367179 R 83333 CDS NP_418566.1 16131967 948655 4368711..4369004 1 NC_000913.2 GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; Cpn10 chaperonin GroES, small subunit of GroESL 4369004 groS 948655 groS Escherichia coli K12 Cpn10 chaperonin GroES, small subunit of GroESL NP_418566.1 4368711 D 83333 CDS NP_418567.1 16131968 948665 4369048..4370694 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; Cpn60 chaperonin GroEL, large subunit of GroESL 4370694 groL 948665 groL Escherichia coli K12 Cpn60 chaperonin GroEL, large subunit of GroESL NP_418567.1 4369048 D 83333 CDS NP_418568.2 90111692 948664 4370832..4371185 1 NC_000913.2 conserved protein 4371185 yjeI 948664 yjeI Escherichia coli K12 conserved protein NP_418568.2 4370832 D 83333 CDS NP_418569.1 16131970 948663 complement(4371388..4372257) 1 NC_000913.2 predicted protein 4372257 yjeJ 948663 yjeJ Escherichia coli K12 predicted protein NP_418569.1 4371388 R 83333 CDS NP_418570.1 16131971 948662 complement(4372652..4373680) 1 NC_000913.2 predicted lysine aminomutase 4373680 yjeK 948662 yjeK Escherichia coli K12 predicted lysine aminomutase NP_418570.1 4372652 R 83333 CDS NP_418571.1 16131972 948661 4373722..4374288 1 NC_000913.2 elongation factor P (EF-P); GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; Elongation factor EF-P 4374288 efp 948661 efp Escherichia coli K12 Elongation factor EF-P NP_418571.1 4373722 D 83333 CDS YP_026283.1 49176462 2847736 4374340..4374465 1 NC_000913.2 entericidin A antidote to lipoprotein entericidin B; component of a chromosomally encoded addiction module; entericidin A membrane lipoprotein, antidote entericidin B 4374465 ecnA 2847736 ecnA Escherichia coli K12 entericidin A membrane lipoprotein, antidote entericidin B YP_026283.1 4374340 D 83333 CDS YP_026284.1 49176463 2847737 4374576..4374722 1 NC_000913.2 entericidin B bacteriolytic lipoprotein; component of a chromosomally encoded addiction module; entericidin B membrane lipoprotein 4374722 ecnB 2847737 ecnB Escherichia coli K12 entericidin B membrane lipoprotein YP_026284.1 4374576 D 83333 CDS NP_418572.4 90111693 948671 4374898..4375215 1 NC_000913.2 suppresses groEL, may be chaperone; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 4375215 sugE 948671 sugE Escherichia coli K12 multidrug efflux system protein NP_418572.4 4374898 D 83333 CDS NP_418573.1 16131974 948670 complement(4375212..4375745) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane lipoprotein (lipocalin) 4375745 blc 948670 blc Escherichia coli K12 outer membrane lipoprotein (lipocalin) NP_418573.1 4375212 R 83333 CDS NP_418574.1 16131975 948669 complement(4375834..4376967) 1 NC_000913.2 beta-lactamase; penicillin resistance; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: response to drug [goid 0042493]; beta-lactamase/D-alanine carboxypeptidase 4376967 ampC 948669 ampC Escherichia coli K12 beta-lactamase/D-alanine carboxypeptidase NP_418574.1 4375834 R 83333 CDS NP_418575.1 16131976 948668 complement(4377030..4377389) 1 NC_000913.2 fumarate reductase, anaerobic, membrane anchor polypeptide; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic), membrane anchor subunit 4377389 frdD 948668 frdD Escherichia coli K12 fumarate reductase (anaerobic), membrane anchor subunit NP_418575.1 4377030 R 83333 CDS NP_418576.1 16131977 948680 complement(4377400..4377795) 1 NC_000913.2 fumarate reductase, anaerobic, membrane anchor polypeptide; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic), membrane anchor subunit 4377795 frdC 948680 frdC Escherichia coli K12 fumarate reductase (anaerobic), membrane anchor subunit NP_418576.1 4377400 R 83333 CDS NP_418577.1 16131978 948666 complement(4377806..4378540) 1 NC_000913.2 fumarate reductase, anaerobic, iron-sulfur protein subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic), Fe-S subunit 4378540 frdB 948666 frdB Escherichia coli K12 fumarate reductase (anaerobic), Fe-S subunit NP_418577.1 4377806 R 83333 CDS NP_418578.1 16131979 948667 complement(4378533..4380341) 1 NC_000913.2 fumarate reductase, anaerobic, flavoprotein subunit; GO_component: cytoplasm [goid 0005737]; GO_function: electron acceptor activity [goid 0009054]; GO_process: fermentation [goid 0006113]; GO_process: anaerobic respiration [goid 0009061]; fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit 4380341 frdA 948667 frdA Escherichia coli K12 fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit NP_418578.1 4378533 R 83333 CDS NP_418579.2 90111694 948672 4380666..4381643 1 NC_000913.2 putative lysyl-tRNA synthetase; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; predicted lysyl-tRNA synthetase 4381643 poxA 948672 poxA Escherichia coli K12 predicted lysyl-tRNA synthetase NP_418579.2 4380666 D 83333 CDS NP_418580.2 90111695 948679 4381862..4383364 1 NC_000913.2 putative transport; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4383364 yjeM 948679 yjeM Escherichia coli K12 predicted transporter NP_418580.2 4381862 D 83333 CDS NP_418581.1 16131982 948678 4383416..4383730 1 NC_000913.2 predicted protein 4383730 yjeN 948678 yjeN Escherichia coli K12 predicted protein NP_418581.1 4383416 D 83333 CDS NP_418582.1 16131983 948677 4383727..4384041 1 NC_000913.2 conserved inner membrane protein 4384041 yjeO 948677 yjeO Escherichia coli K12 conserved inner membrane protein NP_418582.1 4383727 D 83333 CDS NP_418583.1 16131984 948676 complement(4384070..4387393) 1 NC_000913.2 putative periplasmic binding protein; GO_component: periplasmic space [goid 0042597]; predicted mechanosensitive channel 4387393 yjeP 948676 yjeP Escherichia coli K12 predicted mechanosensitive channel NP_418583.1 4384070 R 83333 CDS NP_418584.1 16131985 948673 complement(4387415..4388383) 1 NC_000913.2 phosphatidylserine decarboxylase; phospholipid synthesis; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; phosphatidylserine decarboxylase 4388383 psd 948673 psd Escherichia coli K12 phosphatidylserine decarboxylase NP_418584.1 4387415 R 83333 CDS NP_418585.4 90111696 948674 complement(4388480..4389532) 1 NC_000913.2 ribosome small subunit-dependent GTPase A 4389532 rsgA 948674 rsgA Escherichia coli K12 ribosome small subunit-dependent GTPase A NP_418585.4 4388480 R 83333 CDS NP_418586.4 90111697 948675 4389627..4390172 1 NC_000913.2 GO_process: RNA catabolic process [goid 0006401]; oligoribonuclease 4390172 orn 948675 orn Escherichia coli K12 oligoribonuclease NP_418586.4 4389627 D 83333 CDS NP_418587.1 16131988 948686 complement(4390951..4392090) 1 NC_000913.2 predicted Fe-S electron transport protein 4392090 yjeS 948686 yjeS Escherichia coli K12 predicted Fe-S electron transport protein NP_418587.1 4390951 R 83333 CDS NP_418588.1 16131989 948685 4392089..4393636 1 NC_000913.2 predicted carbohydrate kinase 4393636 yjeF 948685 yjeF Escherichia coli K12 predicted carbohydrate kinase NP_418588.1 4392089 D 83333 CDS NP_418589.1 16131990 948684 4393608..4394069 1 NC_000913.2 ATPase with strong ADP affinity 4394069 yjeE 948684 yjeE Escherichia coli K12 ATPase with strong ADP affinity NP_418589.1 4393608 D 83333 CDS NP_418590.1 16131991 948683 4394088..4395425 1 NC_000913.2 N-acetylmuramoyl-l-alanine amidase II; a murein hydrolase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; N-acetylmuramoyl-l-alanine amidase II 4395425 amiB 948683 amiB Escherichia coli K12 N-acetylmuramoyl-l-alanine amidase II NP_418590.1 4394088 D 83333 CDS NP_418591.1 16131992 948691 4395435..4397282 1 NC_000913.2 enzyme in methyl-directed mismatch repair; GO_component: cytoplasm [goid 0005737]; GO_process: DNA repair [goid 0006281]; methyl-directed mismatch repair protein 4397282 mutL 948691 mutL Escherichia coli K12 methyl-directed mismatch repair protein NP_418591.1 4395435 D 83333 CDS NP_418592.1 16131993 948690 4397275..4398225 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 4398225 miaA 948690 miaA Escherichia coli K12 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase NP_418592.1 4397275 D 83333 CDS NP_418593.1 16131994 948689 4398311..4398619 1 NC_000913.2 host factor I for bacteriophage Q beta replication, a growth-related protein; GO_process: translational attenuation [goid 0009386]; HF-I, host factor for RNA phage Q beta replication 4398619 hfq 948689 hfq Escherichia coli K12 HF-I, host factor for RNA phage Q beta replication NP_418593.1 4398311 D 83333 CDS NP_418594.1 16131995 948688 4398695..4399975 1 NC_000913.2 GTP - binding subunit of protease specific for phage lambda cII repressor; predicted GTPase 4399975 hflX 948688 hflX Escherichia coli K12 predicted GTPase NP_418594.1 4398695 D 83333 CDS NP_418595.1 16131996 948698 4400061..4401320 1 NC_000913.2 protease specific for phage lambda cII repressor; modulator for HflB protease specific for phage lambda cII repressor 4401320 hflK 948698 hflK Escherichia coli K12 modulator for HflB protease specific for phage lambda cII repressor NP_418595.1 4400061 D 83333 CDS NP_418596.1 16131997 948697 4401323..4402327 1 NC_000913.2 protease specific for phage lambda cII repressor; modulator for HflB protease specific for phage lambda cII repressor 4402327 hflC 948697 hflC Escherichia coli K12 modulator for HflB protease specific for phage lambda cII repressor NP_418596.1 4401323 D 83333 CDS NP_418597.1 16131998 948696 4402409..4402606 1 NC_000913.2 conserved inner membrane protein 4402606 yjeT 948696 yjeT Escherichia coli K12 conserved inner membrane protein NP_418597.1 4402409 D 83333 CDS NP_418598.1 16131999 948695 4402710..4404008 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; adenylosuccinate synthetase 4404008 purA 948695 purA Escherichia coli K12 adenylosuccinate synthetase NP_418598.1 4402710 D 83333 CDS NP_418599.1 16132000 948693 4404213..4404638 1 NC_000913.2 predicted DNA-binding transcriptional regulator 4404638 nsrR 948693 nsrR Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418599.1 4404213 D 83333 CDS NP_418600.4 90111698 948692 4404677..4407118 1 NC_000913.2 GO_process: RNA catabolic process [goid 0006401]; exoribonuclease R, RNase R 4407118 rnr 948692 rnr Escherichia coli K12 exoribonuclease R, RNase R NP_418600.4 4404677 D 83333 CDS NP_418601.1 16132002 948694 4407298..4408029 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; 23S rRNA (Gm2251)-methyltransferase 4408029 rlmB 948694 rlmB Escherichia coli K12 23S rRNA (Gm2251)-methyltransferase NP_418601.1 4407298 D 83333 CDS NP_418602.1 16132003 948704 4408156..4408557 1 NC_000913.2 conserved protein 4408557 yjfI 948704 yjfI Escherichia coli K12 conserved protein NP_418602.1 4408156 D 83333 CDS NP_418603.1 16132004 948703 4408576..4409274 1 NC_000913.2 putative alpha helical protein; predicted transcriptional regulator effector protein 4409274 yjfJ 948703 yjfJ Escherichia coli K12 predicted transcriptional regulator effector protein NP_418603.1 4408576 D 83333 CDS NP_418604.1 16132005 948702 4409325..4409984 1 NC_000913.2 conserved protein 4409984 yjfK 948702 yjfK Escherichia coli K12 conserved protein NP_418604.1 4409325 D 83333 CDS NP_418605.1 16132006 948701 4410002..4410400 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4410400 yjfL 948701 yjfL Escherichia coli K12 conserved inner membrane protein NP_418605.1 4410002 D 83333 CDS NP_418606.1 16132007 948700 4410410..4411048 1 NC_000913.2 conserved protein 4411048 yjfM 948700 yjfM Escherichia coli K12 conserved protein NP_418606.1 4410410 D 83333 CDS NP_418607.1 16132008 948699 4411051..4412214 1 NC_000913.2 putative synthetase/amidase; predicted synthetase/amidase 4412214 yjfC 948699 yjfC Escherichia coli K12 predicted synthetase/amidase NP_418607.1 4411051 D 83333 CDS NP_418608.6 162135915 948710 4412298..4413923 1 NC_000913.2 putative acyl coenzyme A dehydrogenase; GO_process: response to stress [goid 0006950]; isovaleryl CoA dehydrogenase 4413923 aidB 948710 aidB Escherichia coli K12 isovaleryl CoA dehydrogenase NP_418608.6 4412298 D 83333 CDS NP_418609.4 90111700 948709 complement(4414040..4414315) 1 NC_000913.2 predicted protein 4414315 yjfN 948709 yjfN Escherichia coli K12 predicted protein NP_418609.4 4414040 R 83333 CDS NP_418610.4 90111701 948708 complement(4414464..4414793) 1 NC_000913.2 conserved protein 4414793 yjfO 948708 yjfO Escherichia coli K12 conserved protein NP_418610.4 4414464 R 83333 CDS NP_418611.1 16132012 948707 4414975..4415724 1 NC_000913.2 predicted hydrolase 4415724 yjfP 948707 yjfP Escherichia coli K12 predicted hydrolase NP_418611.1 4414975 D 83333 CDS NP_418612.1 16132013 948706 complement(4415721..4416476) 1 NC_000913.2 putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional dual regulator 4416476 ulaR 948706 ulaR Escherichia coli K12 DNA-binding transcriptional dual regulator NP_418612.1 4415721 R 83333 CDS NP_418613.2 90111702 948705 complement(4416584..4417648) 1 NC_000913.2 predicted L-ascorbate 6-phosphate lactonase 4417648 ulaG 948705 ulaG Escherichia coli K12 predicted L-ascorbate 6-phosphate lactonase NP_418613.2 4416584 R 83333 CDS NP_418614.4 90111703 948717 4418003..4419400 1 NC_000913.2 GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; L-ascorbate-specific enzyme IIC component of PTS 4419400 ulaA 948717 ulaA Escherichia coli K12 L-ascorbate-specific enzyme IIC component of PTS NP_418614.4 4418003 D 83333 CDS NP_418615.1 16132016 948716 4419416..4419721 1 NC_000913.2 GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; L-ascorbate-specific enzyme IIB component of PTS 4419721 ulaB 948716 ulaB Escherichia coli K12 L-ascorbate-specific enzyme IIB component of PTS NP_418615.1 4419416 D 83333 CDS NP_418616.1 16132017 948715 4419731..4420195 1 NC_000913.2 putative PTS system enzyme II A component; L-ascorbate-specific enzyme IIA component of PTS 4420195 ulaC 948715 ulaC Escherichia coli K12 L-ascorbate-specific enzyme IIA component of PTS NP_418616.1 4419731 D 83333 CDS NP_418617.1 16132018 948714 4420209..4420859 1 NC_000913.2 probable hexulose-6-phosphate synthase; 3-keto-L-gulonate 6-phosphate decarboxylase 4420859 ulaD 948714 ulaD Escherichia coli K12 3-keto-L-gulonate 6-phosphate decarboxylase NP_418617.1 4420209 D 83333 CDS NP_418618.1 16132019 948712 4420869..4421723 1 NC_000913.2 putative hexulose-6-phosphate isomerase; L-xylulose 5-phosphate 3-epimerase 4421723 ulaE 948712 ulaE Escherichia coli K12 L-xylulose 5-phosphate 3-epimerase NP_418618.1 4420869 D 83333 CDS NP_418619.1 16132020 948711 4421723..4422409 1 NC_000913.2 putative epimerase/aldolase; L-ribulose 5-phosphate 4-epimerase 4422409 ulaF 948711 ulaF Escherichia coli K12 L-ribulose 5-phosphate 4-epimerase NP_418619.1 4421723 D 83333 CDS NP_418620.1 16132021 948713 complement(4422539..4422814) 1 NC_000913.2 predicted protein 4422814 yjfY 948713 yjfY Escherichia coli K12 predicted protein NP_418620.1 4422539 R 83333 CDS NP_418621.1 16132022 948723 4423141..4423536 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S6 4423536 rpsF 948723 rpsF Escherichia coli K12 30S ribosomal subunit protein S6 NP_418621.1 4423141 D 83333 CDS NP_418622.1 16132023 948722 4423543..4423857 1 NC_000913.2 primosomal replication protein N; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; primosomal protein N 4423857 priB 948722 priB Escherichia coli K12 primosomal protein N NP_418622.1 4423543 D 83333 CDS NP_418623.1 16132024 948721 4423862..4424089 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 30S ribosomal subunit protein S18 4424089 rpsR 948721 rpsR Escherichia coli K12 30S ribosomal subunit protein S18 NP_418623.1 4423862 D 83333 CDS NP_418624.1 16132025 948720 4424131..4424580 1 NC_000913.2 GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_function: structural constituent of ribosome [goid 0003735]; GO_process: translation [goid 0006412]; 50S ribosomal subunit protein L9 4424580 rplI 948720 rplI Escherichia coli K12 50S ribosomal subunit protein L9 NP_418624.1 4424131 D 83333 CDS NP_418625.1 16132026 948719 complement(4424651..4425445) 1 NC_000913.2 predicted protein 4425445 yjfZ 948719 yjfZ Escherichia coli K12 predicted protein NP_418625.1 4424651 R 83333 CDS b4205 948718 4425717..4426118 1 NC_000913.2 pseudogene, predicted transcriptional regulator; 4426118 ytfA 948718 ytfA Escherichia coli K12 4425717 D 83333 CDS NP_418627.4 162135916 948727 complement(4426102..4426740) 1 NC_000913.2 predicted cell envelope opacity-associated protein 4426740 ytfB 948727 ytfB Escherichia coli K12 predicted cell envelope opacity-associated protein NP_418627.4 4426102 R 83333 CDS NP_418628.4 90111705 948726 4426958..4427578 1 NC_000913.2 FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase); GO_process: protein folding [goid 0006457]; FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) 4427578 fklB 948726 fklB Escherichia coli K12 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) NP_418628.4 4426958 D 83333 CDS NP_418629.1 16132030 948725 4427887..4429299 1 NC_000913.2 transport of D-alanine, D-serine, and glycine; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: amino acid catabolic process [goid 0009063]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: alanine biosynthetic process [goid 0006523]; GO_process: purine nucleotide biosynthetic process [goid 0006164]; GO_process: glutathione biosynthetic process [goid 0006750]; D-alanine/D-serine/glycine transporter 4429299 cycA 948725 cycA Escherichia coli K12 D-alanine/D-serine/glycine transporter NP_418629.1 4427887 D 83333 CDS NP_418630.1 16132031 948724 complement(4429344..4430006) 1 NC_000913.2 predicted regulator of cell morphogenesis and cell wall metabolism 4430006 ytfE 948724 ytfE Escherichia coli K12 predicted regulator of cell morphogenesis and cell wall metabolism NP_418630.1 4429344 R 83333 CDS NP_418631.1 16132032 948732 complement(4430114..4431088) 1 NC_000913.2 putative transmembrane subunit; predicted inner membrane protein 4431088 ytfF 948732 ytfF Escherichia coli K12 predicted inner membrane protein NP_418631.1 4430114 R 83333 CDS NP_418632.1 16132033 948731 complement(4431187..4432047) 1 NC_000913.2 putative oxidoreductase; NAD(P)H:quinone oxidoreductase 4432047 ytfG 948731 ytfG Escherichia coli K12 NAD(P)H:quinone oxidoreductase NP_418632.1 4431187 R 83333 CDS NP_418633.4 90111706 948730 4432136..4432516 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted transcriptional regulator 4432516 ytfH 948730 ytfH Escherichia coli K12 predicted transcriptional regulator NP_418633.4 4432136 D 83333 CDS NP_418634.1 16132035 948729 complement(4432645..4434588) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 2':3'-cyclic-nucleotide 2'-phosphodiesterase 4434588 cpdB 948729 cpdB Escherichia coli K12 2':3'-cyclic-nucleotide 2'-phosphodiesterase NP_418634.1 4432645 R 83333 CDS NP_418635.1 16132036 948728 4434778..4435518 1 NC_000913.2 affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis; GO_process: sulfur metabolic process [goid 0006790]; PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase 4435518 cysQ 948728 cysQ Escherichia coli K12 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase NP_418635.1 4434778 D 83333 CDS YP_026285.1 49176474 948738 4435730..4436668 1 NC_000913.2 predicted protein 4436668 ytfI 948738 ytfI Escherichia coli K12 predicted protein YP_026285.1 4435730 D 83333 CDS NP_418637.1 16132038 948737 complement(4436731..4437285) 1 NC_000913.2 predicted transcriptional regulator 4437285 ytfJ 948737 ytfJ Escherichia coli K12 predicted transcriptional regulator NP_418637.1 4436731 R 83333 CDS NP_418638.2 90111707 948736 4437610..4437816 1 NC_000913.2 conserved protein 4437816 ytfK 948736 ytfK Escherichia coli K12 conserved protein NP_418638.2 4437610 D 83333 CDS NP_418639.1 16132040 948735 complement(4437895..4439238) 1 NC_000913.2 putative transport protein; predicted inner membrane protein 4439238 ytfL 948735 ytfL Escherichia coli K12 predicted inner membrane protein NP_418639.1 4437895 R 83333 CDS NP_418640.1 16132041 948734 complement(4439561..4440199) 1 NC_000913.2 peptide methionine sulfoxide reductase; GO_process: protein folding [goid 0006457]; methionine sulfoxide reductase A 4440199 msrA 948734 msrA Escherichia coli K12 methionine sulfoxide reductase A NP_418640.1 4439561 R 83333 CDS NP_418641.1 16132042 948733 4440405..4442138 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; predicted outer membrane protein and surface antigen 4442138 ytfM 948733 ytfM Escherichia coli K12 predicted outer membrane protein and surface antigen NP_418641.1 4440405 D 83333 CDS NP_418642.1 16132043 948742 4442135..4445914 1 NC_000913.2 conserved protein 4445914 ytfN 948742 ytfN Escherichia coli K12 conserved protein NP_418642.1 4442135 D 83333 CDS NP_418643.1 16132044 948741 4445917..4446258 1 NC_000913.2 conserved protein 4446258 ytfP 948741 ytfP Escherichia coli K12 conserved protein NP_418643.1 4445917 D 83333 CDS NP_418645.2 90111708 948739 4446470..4446721 1 NC_000913.2 suppressor of inhibitory function of ChpB, PemI-like, autoregulated; antitoxin of the ChpB-ChpS toxin-antitoxin system 4446721 chpS 948739 chpS Escherichia coli K12 antitoxin of the ChpB-ChpS toxin-antitoxin system NP_418645.2 4446470 D 83333 CDS NP_418646.1 16132047 948747 4446715..4447065 1 NC_000913.2 probable growth inhibitor, PemK-like, autoregulated; toxin of the ChpB-ChpS toxin-antitoxin system 4447065 chpB 948747 chpB Escherichia coli K12 toxin of the ChpB-ChpS toxin-antitoxin system NP_418646.1 4446715 D 83333 CDS NP_418647.1 16132048 948748 complement(4447145..4447675) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: phosphorus metabolic process [goid 0006793]; inorganic pyrophosphatase 4447675 ppa 948748 ppa Escherichia coli K12 inorganic pyrophosphatase NP_418647.1 4447145 R 83333 CDS NP_418648.1 16132049 948746 4447985..4448941 1 NC_000913.2 putative LACI-type transcriptional regulator; GO_component: periplasmic space [goid 0042597]; predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily 4448941 ytfQ 948746 ytfQ Escherichia coli K12 predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily NP_418648.1 4447985 D 83333 CDS YP_026286.1 49176475 2847725 4449081..4450583 1 NC_000913.2 putative sugar transport protein (ABC superfamily, atp_bind); GO_component: cytoplasm [goid 0005737]; predicted sugar transporter subunit: ATP-binding component of ABC superfamily 4450583 ytfR 2847725 ytfR Escherichia coli K12 predicted sugar transporter subunit: ATP-binding component of ABC superfamily YP_026286.1 4449081 D 83333 CDS NP_418651.3 145698343 948743 4450594..4451619 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 4451619 ytfT 948743 ytfT Escherichia coli K12 predicted sugar transporter subunit: membrane component of ABC superfamily NP_418651.3 4450594 D 83333 CDS NP_418652.2 90111710 948754 4451606..4452601 1 NC_000913.2 putative transport system permease protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted sugar transporter subunit: membrane component of ABC superfamily 4452601 yjfF 948754 yjfF Escherichia coli K12 predicted sugar transporter subunit: membrane component of ABC superfamily NP_418652.2 4451606 D 83333 CDS NP_418653.1 16132054 948753 complement(4452634..4453632) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: gluconeogenesis [goid 0006094]; fructose-1,6-bisphosphatase I 4453632 fbp 948753 fbp Escherichia coli K12 fructose-1,6-bisphosphatase I NP_418653.1 4452634 R 83333 CDS NP_418654.1 16132055 948752 4453808..4455181 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_process: peptidoglycan metabolic process [goid 0000270]; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 4455181 mpl 948752 mpl Escherichia coli K12 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase NP_418654.1 4453808 D 83333 CDS NP_418655.1 16132056 948751 complement(4455337..4455888) 1 NC_000913.2 putative alpha helix protein; GO_function: ATP-binding cassette (ABC) transporter activity [goid 0004009]; conserved protein 4455888 yjgA 948751 yjgA Escherichia coli K12 conserved protein NP_418655.1 4455337 R 83333 CDS NP_418656.1 16132057 948750 4455982..4457334 1 NC_000913.2 maturation of antibiotic MccB17, see tld genes; GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 4457334 pmbA 948750 pmbA Escherichia coli K12 predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 NP_418656.1 4455982 D 83333 CDS b4236 948758 4457513..4457878 1 NC_000913.2 pseudogene, truncated cytochrome b562 cytochrome b(562); GO_function: electron carrier activity [goid 0009055]; GO_process: cytochrome complex assembly [goid 0017004]; 4457878 cybC 948758 cybC Escherichia coli K12 4457513 D 83333 CDS NP_418658.1 16132059 948757 complement(4457923..4458387) 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; GO_process: protein modification [goid 0006464]; anaerobic ribonucleotide reductase activating protein 4458387 nrdG 948757 nrdG Escherichia coli K12 anaerobic ribonucleotide reductase activating protein NP_418658.1 4457923 R 83333 CDS NP_418659.1 16132060 948755 complement(4458545..4460683) 1 NC_000913.2 anaerobic ribonucleoside-triphosphate reductase 4460683 nrdD 948755 nrdD Escherichia coli K12 anaerobic ribonucleoside-triphosphate reductase NP_418659.1 4458545 R 83333 CDS NP_418660.1 16132061 948762 complement(4461077..4462732) 1 NC_000913.2 trehalase 6-P hydrolase; GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; trehalose-6-P hydrolase 4462732 treC 948762 treC Escherichia coli K12 trehalose-6-P hydrolase NP_418660.1 4461077 R 83333 CDS NP_418661.1 16132062 948761 complement(4462782..4464203) 1 NC_000913.2 PTS system enzyme II, trehalose specific; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: glucose metabolic process [goid 0006006]; fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component 4464203 treB 948761 treB Escherichia coli K12 fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component NP_418661.1 4462782 R 83333 CDS NP_418662.1 16132063 948760 complement(4464322..4465269) 1 NC_000913.2 repressor of treA,B,C; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: glucose metabolic process [goid 0006006]; GO_process: transcription [goid 0006350]; GO_process: response to osmotic stress [goid 0006970]; DNA-binding transcriptional repressor 4465269 treR 948760 treR Escherichia coli K12 DNA-binding transcriptional repressor NP_418662.1 4464322 R 83333 CDS NP_418663.1 16132064 948778 4465648..4468344 1 NC_000913.2 Mg2+ transport ATPase, P-type 1; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism [goid 0015662]; GO_process: ATP synthesis coupled proton transport [goid 0015986]; magnesium transporter 4468344 mgtA 948778 mgtA Escherichia coli K12 magnesium transporter NP_418663.1 4465648 D 83333 CDS NP_418664.2 90111711 948771 complement(4468550..4468936) 1 NC_000913.2 ketoacid-binding protein 4468936 yjgF 948771 yjgF Escherichia coli K12 ketoacid-binding protein NP_418664.2 4468550 R 83333 CDS NP_418665.1 16132066 948763 complement(4469009..4469470) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; aspartate carbamoyltransferase, regulatory subunit 4469470 pyrI 948763 pyrI Escherichia coli K12 aspartate carbamoyltransferase, regulatory subunit NP_418665.1 4469009 R 83333 CDS NP_418666.1 16132067 948767 complement(4469483..4470418) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; aspartate carbamoyltransferase, catalytic subunit 4470418 pyrB 948767 pyrB Escherichia coli K12 aspartate carbamoyltransferase, catalytic subunit NP_418666.1 4469483 R 83333 CDS NP_418667.1 16132068 948768 complement(4470422..4470556) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: pyrimidine nucleotide biosynthetic process [goid 0006221]; pyrBI operon leader peptide 4470556 pyrL 948768 pyrL Escherichia coli K12 pyrBI operon leader peptide NP_418667.1 4470422 R 83333 CDS NP_418669.1 16132070 948769 complement(4470837..4471232) 1 NC_000913.2 GO_process: translation [goid 0006412]; predicted mRNA endoribonuclease 4471232 yjgH 948769 yjgH Escherichia coli K12 predicted mRNA endoribonuclease NP_418669.1 4470837 R 83333 CDS NP_418670.1 16132071 948765 complement(4471363..4472076) 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain 4472076 yjgI 948765 yjgI Escherichia coli K12 predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain NP_418670.1 4471363 R 83333 CDS NP_418672.4 90111712 948775 4472147..4472740 1 NC_000913.2 predicted transcriptional regulator 4472740 yjgJ 948775 yjgJ Escherichia coli K12 predicted transcriptional regulator NP_418672.4 4472147 D 83333 CDS NP_418673.4 90111713 948777 4472885..4473337 1 NC_000913.2 conserved protein 4473337 yjgK 948777 yjgK Escherichia coli K12 conserved protein NP_418673.4 4472885 D 83333 CDS NP_418674.2 90111714 948776 4473460..4475274 1 NC_000913.2 predicted protein 4475274 yjgL 948776 yjgL Escherichia coli K12 predicted protein NP_418674.2 4473460 D 83333 CDS NP_418675.1 16132076 948774 complement(4475330..4476334) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: arginine biosynthetic process [goid 0006526]; ornithine carbamoyltransferase 1 4476334 argI 948774 argI Escherichia coli K12 ornithine carbamoyltransferase 1 NP_418675.1 4475330 R 83333 CDS NP_418676.1 16132077 948773 4476496..4476912 1 NC_000913.2 conserved protein 4476912 rraB 948773 rraB Escherichia coli K12 conserved protein NP_418676.1 4476496 D 83333 CDS YP_026287.1 49176479 948772 complement(4477057..4477560) 1 NC_000913.2 putative acyltransferase; predicted acetyltransferase 4477560 yjgM 948772 yjgM Escherichia coli K12 predicted acetyltransferase YP_026287.1 4477057 R 83333 CDS YP_026288.1 49176480 948784 4477753..4478949 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4478949 yjgN 948784 yjgN Escherichia coli K12 conserved inner membrane protein YP_026288.1 4477753 D 83333 CDS NP_418679.1 16132080 948785 complement(4479005..4481860) 1 NC_000913.2 valine tRNA synthetase; GO_component: cytoplasm [goid 0005737]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; valyl-tRNA synthetase 4481860 valS 948785 valS Escherichia coli K12 valyl-tRNA synthetase NP_418679.1 4479005 R 83333 CDS NP_418680.1 16132081 948787 complement(4481860..4482303) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, chi subunit 4482303 holC 948787 holC Escherichia coli K12 DNA polymerase III, chi subunit NP_418680.1 4481860 R 83333 CDS NP_418681.1 16132082 948791 complement(4482463..4483974) 1 NC_000913.2 aminopeptidase A/I; GO_component: cytoplasm [goid 0005737]; GO_process: DNA recombination [goid 0006310]; GO_process: transcription [goid 0006350]; aminopeptidase A, a cyteinylglycinase 4483974 pepA 948791 pepA Escherichia coli K12 aminopeptidase A, a cyteinylglycinase NP_418681.1 4482463 R 83333 CDS NP_418682.1 16132083 948795 4484241..4485341 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4485341 yjgP 948795 yjgP Escherichia coli K12 conserved inner membrane protein NP_418682.1 4484241 D 83333 CDS NP_418683.4 90111715 945324 4485341..4486423 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4486423 yjgQ 945324 yjgQ Escherichia coli K12 conserved inner membrane protein NP_418683.4 4485341 D 83333 CDS NP_418684.1 16132085 948978 complement(4486584..4488086) 1 NC_000913.2 predicted ATPase 4488086 yjgR 948978 yjgR Escherichia coli K12 predicted ATPase NP_418684.1 4486584 R 83333 CDS NP_418685.1 16132086 949058 complement(4488164..4489162) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, 5-gluconate-binding 4489162 idnR 949058 idnR Escherichia coli K12 DNA-binding transcriptional repressor, 5-gluconate-binding NP_418685.1 4488164 R 83333 CDS NP_418686.1 16132087 948798 complement(4489229..4490548) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; L-idonate and D-gluconate transporter 4490548 idnT 948798 idnT Escherichia coli K12 L-idonate and D-gluconate transporter NP_418686.1 4489229 R 83333 CDS NP_418687.1 16132088 947109 complement(4490610..4491374) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: carbohydrate catabolic process [goid 0016052]; 5-keto-D-gluconate-5-reductase 4491374 idnO 947109 idnO Escherichia coli K12 5-keto-D-gluconate-5-reductase NP_418687.1 4490610 R 83333 CDS NP_418688.1 16132089 944769 complement(4491398..4492429) 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; L-idonate 5-dehydrogenase, NAD-binding 4492429 idnD 944769 idnD Escherichia coli K12 L-idonate 5-dehydrogenase, NAD-binding NP_418688.1 4491398 R 83333 CDS NP_418689.1 16132090 946066 4492646..4493209 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; D-gluconate kinase, thermosensitive 4493209 idnK 946066 idnK Escherichia coli K12 D-gluconate kinase, thermosensitive NP_418689.1 4492646 D 83333 CDS NP_418690.4 90111716 948802 complement(4493213..4494232) 1 NC_000913.2 putative oxidoreductase; predicted alcohol dehydrogenase, Zn-dependent and NAD(P)-binding 4494232 yjgB 948802 yjgB Escherichia coli K12 predicted alcohol dehydrogenase, Zn-dependent and NAD(P)-binding NP_418690.4 4493213 R 83333 CDS b4271 948782 4494698..4495963 1 NC_000913.2 KpLE2 phage-like element; predicted integrase;IS, phage, Tn; Phage-related functions and prophages KpLE2 phage-like element; P4-like integrase; 4495963 intB 948782 intB Escherichia coli K12 4494698 D 83333 CDS NP_418692.2 145698344 948781 4496295..4496660 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element repressor InsA 4496660 insC 948781 insC Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element repressor InsA NP_418692.2 4496295 D 83333 CDS NP_418693.1 16132094 948779 4496618..4497523 1 NC_000913.2 KpLE2 phage-like element; IS2 insertion element transposase InsAB' 4497523 insD 948779 insD Escherichia coli K12 KpLE2 phage-like element; IS2 insertion element transposase InsAB' NP_418693.1 4496618 D 83333 CDS b4575 4056033 complement(join(4497616..4498557,4498557..4498814)) 1 NC_000913.2 KpLE2 phage-like element; predicted protein, C-ter fragment (pseudogene); GO_component: peptidoglycan-based cell wall [goid 0009274]; 4498814 yjgX 4056033 yjgX Escherichia coli K12 4497616 R 83333 CDS NP_418697.1 16132098 948804 4499283..4499612 1 NC_000913.2 KpLE2 phage-like element; predicted protein 4499612 yjgZ 948804 yjgZ Escherichia coli K12 KpLE2 phage-like element; predicted protein NP_418697.1 4499283 D 83333 CDS NP_418698.1 16132099 948805 complement(4500126..4501454) 1 NC_000913.2 KpLE2 phage-like element; IS4 predicted transposase 4501454 insG 948805 insG Escherichia coli K12 KpLE2 phage-like element; IS4 predicted transposase NP_418698.1 4500126 R 83333 CDS NP_418699.4 90111718 948807 4502081..4503298 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; KpLE2 phage-like element; predicted transporter 4503298 yjhB 948807 yjhB Escherichia coli K12 KpLE2 phage-like element; predicted transporter NP_418699.4 4502081 D 83333 CDS NP_418700.2 90111719 948808 4503310..4504428 1 NC_000913.2 putative dehydrogenase; KpLE2 phage-like element; predicted oxidoreductase 4504428 yjhC 948808 yjhC Escherichia coli K12 KpLE2 phage-like element; predicted oxidoreductase NP_418700.2 4503310 D 83333 CDS YP_001491548.1 157783151 5625581 4504471..4504596 1 NC_000913.2 expressed protein 4504596 ythA 5625581 ythA Escherichia coli K12 expressed protein YP_001491548.1 4504471 D 83333 CDS b4281 948809 complement(4504649..4504879) 1 NC_000913.2 pseudogene, KpLE2 phage-like element; 4504879 yjhD 948809 yjhD Escherichia coli K12 4504649 R 83333 CDS b4282 948810 4504884..4505132 1 NC_000913.2 pseudogene, KpLE2 phage-like element; predicted membrane protein; 4505132 yjhE 948810 yjhE Escherichia coli K12 4504884 D 83333 CDS b4623 5061531 join(4505220..4505474,4507032..4507816) 1 NC_000913.2 pseudogene, IS911 transposase ORFAB; 4507816 insO 5061531 insO Escherichia coli K12 4505220 D 83333 CDS NP_418704.1 16132105 948815 complement(4505489..4506640) 1 NC_000913.2 KpLE2 phage-like element; IS30 transposase 4506640 insI 948815 insI Escherichia coli K12 KpLE2 phage-like element; IS30 transposase NP_418704.1 4505489 R 83333 CDS b4561 1450310 complement(4506699..4506965) 1 NC_000913.2 AELESEILQLRKALNEARLERDILKKATV;KpLE2 phage-like element; predicted transposase fragment (pseudogene); 4506965 insM 1450310 insM Escherichia coli K12 4506699 R 83333 CDS b4286 948818 4507827..4508156 1 NC_000913.2 pseudogene, KpLE2 phage-like element; 4508156 yjhV 948818 yjhV Escherichia coli K12 4507827 D 83333 CDS NP_418707.1 16132108 948819 complement(4508713..4509480) 1 NC_000913.2 ATP-binding component of citrate-dependent iron(III) transport protein; ATP-binding component of ABC superfamily; GO_component: cytoplasm [goid 0005737]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; iron-dicitrate transporter subunit 4509480 fecE 948819 fecE Escherichia coli K12 KpLE2 phage-like element; iron-dicitrate transporter subunit NP_418707.1 4508713 R 83333 CDS NP_418708.1 16132109 946816 complement(4509481..4510437) 1 NC_000913.2 citrate-dependent iron transport, membrane-bound protein; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; KpLE2 phage-like element; iron-dicitrate transporter subunit 4510437 fecD 946816 fecD Escherichia coli K12 KpLE2 phage-like element; iron-dicitrate transporter subunit NP_418708.1 4509481 R 83333 CDS NP_418709.1 16132110 948826 complement(4510434..4511432) 1 NC_000913.2 citrate-dependent iron(III) transport protein, cytosolic; membrane component of ABC superfamily; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; iron-dicitrate transporter subunit 4511432 fecC 948826 fecC Escherichia coli K12 KpLE2 phage-like element; iron-dicitrate transporter subunit NP_418709.1 4510434 R 83333 CDS NP_418710.4 162135917 946838 complement(4511429..4512331) 1 NC_000913.2 citrate-dependent iron transport, periplasmic protein; periplasmic-binding component of ABC superfamily; GO_component: periplasmic space [goid 0042597]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; iron-dicitrate transporter subunit 4512331 fecB 946838 fecB Escherichia coli K12 KpLE2 phage-like element; iron-dicitrate transporter subunit NP_418710.4 4511429 R 83333 CDS NP_418711.1 16132112 946427 complement(4512376..4514700) 1 NC_000913.2 outer membrane receptor; citrate-dependent iron transport, outer membrane receptor; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; ferric citrate outer membrane transporter 4514700 fecA 946427 fecA Escherichia coli K12 KpLE2 phage-like element; ferric citrate outer membrane transporter NP_418711.1 4512376 R 83333 CDS NP_418712.1 16132113 949104 complement(4514787..4515740) 1 NC_000913.2 regulator for fec operon, periplasmic; GO_component: organelle inner membrane [goid 0019866]; GO_process: transcription [goid 0006350]; GO_process: iron ion transport [goid 0006826]; KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport 4515740 fecR 949104 fecR Escherichia coli K12 KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport NP_418712.1 4514787 R 83333 CDS NP_418713.1 16132114 946839 complement(4515737..4516258) 1 NC_000913.2 probable RNA polymerase sigma factor; GO_component: cytoplasm [goid 0005737]; GO_process: transcription [goid 0006350]; KpLE2 phage-like element; RNA polymerase, sigma 19 factor 4516258 fecI 946839 fecI Escherichia coli K12 KpLE2 phage-like element; RNA polymerase, sigma 19 factor NP_418713.1 4515737 R 83333 CDS NP_418714.1 16132115 948830 4516550..4516825 1 NC_000913.2 KpLE2 phage-like element; IS1 repressor protein InsA 4516825 insA 948830 insA Escherichia coli K12 KpLE2 phage-like element; IS1 repressor protein InsA NP_418714.1 4516550 D 83333 CDS b4576 4056034 4516744..4517247 1 NC_000913.2 IS1 transposase InsAB';IS, phage, Tn; Transposon-related functions;8.3 extrachromosomal; transposon related; 4517247 insB 4056034 insB Escherichia coli K12 4516744 D 83333 CDS NP_418715.2 90111724 948827 complement(4517361..4518347) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; KpLE2 phage-like element; predicted DNA-binding transcriptional regulator 4518347 yjhU 948827 yjhU Escherichia coli K12 KpLE2 phage-like element; predicted DNA-binding transcriptional regulator NP_418715.2 4517361 R 83333 CDS NP_418716.1 16132117 949102 complement(4518694..4520043) 1 NC_000913.2 putative transport system permease; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; KpLE2 phage-like element; predicted transporter 4520043 yjhF 949102 yjhF Escherichia coli K12 KpLE2 phage-like element; predicted transporter NP_418716.1 4518694 R 83333 CDS NP_418717.1 16132118 946829 complement(4520150..4522117) 1 NC_000913.2 putative dehydratase; KpLE2 phage-like element; predicted dehydratase 4522117 yjhG 946829 yjhG Escherichia coli K12 KpLE2 phage-like element; predicted dehydratase NP_418717.1 4520150 R 83333 CDS NP_418718.4 90111725 948825 complement(4522128..4523033) 1 NC_000913.2 putative lyase/synthase; KpLE2 phage-like element; predicted lyase/synthase 4523033 yjhH 948825 yjhH Escherichia coli K12 KpLE2 phage-like element; predicted lyase/synthase NP_418718.4 4522128 R 83333 CDS NP_418719.1 16132120 949100 complement(4523038..4523826) 1 NC_000913.2 putative regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; KpLE2 phage-like element; predicted DNA-binding transcriptional regulator 4523826 yjhI 949100 yjhI Escherichia coli K12 KpLE2 phage-like element; predicted DNA-binding transcriptional regulator NP_418719.1 4523038 R 83333 CDS NP_418720.1 16132121 946830 complement(4524129..4524911) 1 NC_000913.2 putative DEOR-type transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; KpLE2 phage-like element; predicted DNA-binding transcriptional regulator 4524911 sgcR 946830 sgcR Escherichia coli K12 KpLE2 phage-like element; predicted DNA-binding transcriptional regulator NP_418720.1 4524129 R 83333 CDS NP_418721.1 16132122 948829 complement(4524928..4525560) 1 NC_000913.2 putative epimerase; KpLE2 phage-like element; predicted epimerase 4525560 sgcE 948829 sgcE Escherichia coli K12 KpLE2 phage-like element; predicted epimerase NP_418721.1 4524928 R 83333 CDS NP_418722.1 16132123 948831 complement(4525572..4526003) 1 NC_000913.2 putative PTS system enzyme II A component; KpLE2 phage-like element; predicted phosphotransferase enzyme IIA component 4526003 sgcA 948831 sgcA Escherichia coli K12 KpLE2 phage-like element; predicted phosphotransferase enzyme IIA component NP_418722.1 4525572 R 83333 CDS NP_418723.1 16132124 948834 complement(4526134..4526940) 1 NC_000913.2 putative nucleoside triphosphatase; KpLE2 phage-like element; predicted nucleoside triphosphatase 4526940 sgcQ 948834 sgcQ Escherichia coli K12 KpLE2 phage-like element; predicted nucleoside triphosphatase NP_418723.1 4526134 R 83333 CDS NP_418724.1 16132125 946849 complement(4526953..4528266) 1 NC_000913.2 putative PTS system enzyme IIC component; GO_process: phosphoenolpyruvate-dependent sugar phosphotransferase system [goid 0009401]; KpLE2 phage-like element; predicted phosphotransferase enzyme IIC component 4528266 sgcC 946849 sgcC Escherichia coli K12 KpLE2 phage-like element; predicted phosphotransferase enzyme IIC component NP_418724.1 4526953 R 83333 CDS YP_588476.1 94541133 1450295 complement(4528278..4528556) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; predicted enzyme IIB component of PTS 4528556 sgcB 1450295 sgcB Escherichia coli K12 predicted enzyme IIB component of PTS YP_588476.1 4528278 R 83333 CDS NP_418725.4 90111726 948840 complement(4528553..4529674) 1 NC_000913.2 putative lyase/synthase; KpLE2 phage-like element; predicted endoglucanase with Zn-dependent exopeptidase domain 4529674 sgcX 948840 sgcX Escherichia coli K12 KpLE2 phage-like element; predicted endoglucanase with Zn-dependent exopeptidase domain NP_418725.4 4528553 R 83333 CDS b4656 5625582 complement(4530073..4530333) 1 NC_000913.2 pseudogene, novel zinc finger family; 4530333 yjhY 5625582 yjhY Escherichia coli K12 4530073 R 83333 CDS NP_418726.1 16132127 946851 complement(4530460..4531206) 1 NC_000913.2 putative methyltransferase; KpLE2 phage-like element; predicted methyltransferase 4531206 yjhP 946851 yjhP Escherichia coli K12 KpLE2 phage-like element; predicted methyltransferase NP_418726.1 4530460 R 83333 CDS NP_418727.1 16132128 949059 complement(4531262..4531807) 1 NC_000913.2 GO_process: RNA metabolic process [goid 0016070]; KpLE2 phage-like element; predicted acetyltransferase 4531807 yjhQ 949059 yjhQ Escherichia coli K12 KpLE2 phage-like element; predicted acetyltransferase NP_418727.1 4531262 R 83333 CDS YP_588477.1 94541138 1450297 complement(4531819..4532076) 1 NC_000913.2 conserved protein 4532076 yjhX 1450297 yjhX Escherichia coli K12 conserved protein YP_588477.1 4531819 R 83333 CDS b4657 5625583 complement(4532453..4532698) 1 NC_000913.2 pseudogene, rimK paralog, C-terminal fragment; 4532698 yjhZ 5625583 yjhZ Escherichia coli K12 4532453 R 83333 CDS b4308 944740 join(4532814..4533026,4533026..4534054) 1 NC_000913.2 pseudogene, KpLE2 phage-like element; predicted frameshift suppressor putative frameshift suppressor; 4534054 yjhR 944740 yjhR Escherichia coli K12 4532814 D 83333 CDS NP_418729.1 16132130 948835 complement(4534637..4535617) 1 NC_000913.2 conserved protein 4535617 yjhS 948835 yjhS Escherichia coli K12 conserved protein NP_418729.1 4534637 R 83333 CDS NP_418730.4 90111727 949106 complement(4535682..4536788) 1 NC_000913.2 conserved protein 4536788 yjhT 949106 yjhT Escherichia coli K12 conserved protein NP_418730.4 4535682 R 83333 CDS NP_418731.2 90111728 946843 complement(4536808..4537524) 1 NC_000913.2 N-acetylnuraminic acid outer membrane channel protein 4537524 nanC 946843 nanC Escherichia coli K12 N-acetylnuraminic acid outer membrane channel protein NP_418731.2 4536808 R 83333 CDS NP_418732.1 16132133 948832 4538980..4539582 1 NC_000913.2 recombinase involved in phase variation; regulator for fimA; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_process: pilus biogenesis [goid 0009297]; GO_process: DNA recombination [goid 0006310]; tyrosine recombinase/inversion of on/off regulator of fimA 4539582 fimB 948832 fimB Escherichia coli K12 tyrosine recombinase/inversion of on/off regulator of fimA NP_418732.1 4538980 D 83333 CDS NP_418733.1 16132134 948836 4540060..4540656 1 NC_000913.2 recombinase involved in phase variation; regulator for fimA; GO_component: fimbrium [goid 0009289]; GO_component: cytoplasm [goid 0005737]; GO_process: pilus biogenesis [goid 0009297]; GO_process: DNA recombination [goid 0006310]; tyrosine recombinase/inversion of on/off regulator of fimA 4540656 fimE 948836 fimE Escherichia coli K12 tyrosine recombinase/inversion of on/off regulator of fimA NP_418733.1 4540060 D 83333 CDS NP_418734.1 16132135 948838 4541138..4541686 1 NC_000913.2 GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; major type 1 subunit fimbrin (pilin) 4541686 fimA 948838 fimA Escherichia coli K12 major type 1 subunit fimbrin (pilin) NP_418734.1 4541138 D 83333 CDS NP_418735.2 90111729 948841 4541751..4542290 1 NC_000913.2 fimbrial protein; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; fimbrial protein involved in type 1 pilus biosynthesis 4542290 fimI 948841 fimI Escherichia coli K12 fimbrial protein involved in type 1 pilus biosynthesis NP_418735.2 4541751 D 83333 CDS NP_418736.3 49176488 948843 4542327..4543052 1 NC_000913.2 periplasmic chaperone, required for type 1 fimbriae; GO_component: fimbrium [goid 0009289]; GO_component: periplasmic space [goid 0042597]; GO_process: protein folding [goid 0006457]; chaperone, periplasmic 4543052 fimC 948843 fimC Escherichia coli K12 chaperone, periplasmic NP_418736.3 4542327 D 83333 CDS NP_418737.1 16132138 948844 4543119..4545755 1 NC_000913.2 outer membrane protein; export and assembly of type 1 fimbriae, interrupted; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: cell outer membrane [goid 0009279]; outer membrane usher protein, type 1 fimbrial synthesis 4545755 fimD 948844 fimD Escherichia coli K12 outer membrane usher protein, type 1 fimbrial synthesis NP_418737.1 4543119 D 83333 CDS NP_418738.1 16132139 948845 4545765..4546295 1 NC_000913.2 fimbrial morphology; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; minor component of type 1 fimbriae 4546295 fimF 948845 fimF Escherichia coli K12 minor component of type 1 fimbriae NP_418738.1 4545765 D 83333 CDS NP_418739.1 16132140 948846 4546308..4546811 1 NC_000913.2 fimbrial morphology; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; minor component of type 1 fimbriae 4546811 fimG 948846 fimG Escherichia coli K12 minor component of type 1 fimbriae NP_418739.1 4546308 D 83333 CDS NP_418740.1 16132141 948847 4546831..4547733 1 NC_000913.2 minor fimbrial subunit, D-mannose specific adhesin; GO_component: fimbrium [goid 0009289]; GO_process: glycoprotein biosynthetic process [goid 0009101]; minor component of type 1 fimbriae 4547733 fimH 948847 fimH Escherichia coli K12 minor component of type 1 fimbriae NP_418740.1 4546831 D 83333 CDS NP_418741.1 16132142 948848 complement(4547976..4549319) 1 NC_000913.2 gluconate transport system permease 3; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; fructuronate transporter 4549319 gntP 948848 gntP Escherichia coli K12 fructuronate transporter NP_418741.1 4547976 R 83333 CDS NP_418742.1 16132143 947082 4549659..4550843 1 NC_000913.2 GO_process: carbohydrate catabolic process [goid 0016052]; mannonate hydrolase 4550843 uxuA 947082 uxuA Escherichia coli K12 mannonate hydrolase NP_418742.1 4549659 D 83333 CDS NP_418743.1 16132144 946795 4550924..4552384 1 NC_000913.2 D-mannonate oxidoreductase; GO_process: carbohydrate catabolic process [goid 0016052]; D-mannonate oxidoreductase, NAD-binding 4552384 uxuB 946795 uxuB Escherichia coli K12 D-mannonate oxidoreductase, NAD-binding NP_418743.1 4550924 D 83333 CDS NP_418744.1 16132145 948849 4552599..4553372 1 NC_000913.2 regulator for uxu operon; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor 4553372 uxuR 948849 uxuR Escherichia coli K12 DNA-binding transcriptional repressor NP_418744.1 4552599 D 83333 CDS NP_418745.3 49176489 948850 complement(4553513..4554343) 1 NC_000913.2 predicted protein 4554343 yjiC 948850 yjiC Escherichia coli K12 predicted protein NP_418745.3 4553513 R 83333 CDS NP_418746.4 90111730 948851 4555016..4555408 1 NC_000913.2 DNA replication/recombination/repair protein 4555408 yjiD 948851 yjiD Escherichia coli K12 DNA replication/recombination/repair protein NP_418746.4 4555016 D 83333 CDS NP_418747.1 16132148 948852 complement(4555401..4556312) 1 NC_000913.2 putative transcriptional regulator LYSR-type; GO_function: transcriptional activator activity [goid 0016563]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; predicted DNA-binding transcriptional regulator 4556312 yjiE 948852 yjiE Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418747.1 4555401 R 83333 CDS NP_418748.1 16132149 948853 complement(4556377..4557549) 1 NC_000913.2 isoaspartyl dipeptidase 4557549 iadA 948853 iadA Escherichia coli K12 isoaspartyl dipeptidase NP_418748.1 4556377 R 83333 CDS NP_418749.1 16132150 948854 complement(4557562..4558023) 1 NC_000913.2 conserved inner membrane protein 4558023 yjiG 948854 yjiG Escherichia coli K12 conserved inner membrane protein NP_418749.1 4557562 R 83333 CDS NP_418750.2 90111731 948856 complement(4558020..4558703) 1 NC_000913.2 conserved inner membrane protein 4558703 yjiH 948856 yjiH Escherichia coli K12 conserved inner membrane protein NP_418750.2 4558020 R 83333 CDS NP_418751.4 90111732 948858 4558953..4559507 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; 2'-phosphotransferase 4559507 kptA 948858 kptA Escherichia coli K12 2'-phosphotransferase NP_418751.4 4558953 D 83333 CDS NP_418752.1 16132153 948859 complement(4559520..4560698) 1 NC_000913.2 putative transport protein; predicted inner membrane protein 4560698 yjiJ 948859 yjiJ Escherichia coli K12 predicted inner membrane protein NP_418752.1 4559520 R 83333 CDS NP_418753.3 145698345 948957 complement(4560766..4561626) 1 NC_000913.2 GO_component: cell outer membrane [goid 0009279]; conserved protein 4561626 yjiK 948957 yjiK Escherichia coli K12 conserved protein NP_418753.3 4560766 R 83333 CDS NP_418754.2 90111734 948837 complement(4561945..4562712) 1 NC_000913.2 putative enzyme; predicted ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase 4562712 yjiL 948837 yjiL Escherichia coli K12 predicted ATPase, activator of (R)-hydroxyglutaryl-CoA dehydratase NP_418754.2 4561945 R 83333 CDS NP_418755.4 90111735 945789 complement(4562722..4563873) 1 NC_000913.2 predicted 2-hydroxyglutaryl-CoA dehydratase 4563873 yjiM 945789 yjiM Escherichia coli K12 predicted 2-hydroxyglutaryl-CoA dehydratase NP_418755.4 4562722 R 83333 CDS NP_418756.1 16132157 948860 complement(4563989..4565269) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; conserved inner membrane protein 4565269 yjiN 948860 yjiN Escherichia coli K12 conserved inner membrane protein NP_418756.1 4563989 R 83333 CDS NP_418757.1 16132158 948861 complement(4565310..4566542) 1 NC_000913.2 putative transport protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; multidrug efflux system protein 4566542 mdtM 948861 mdtM Escherichia coli K12 multidrug efflux system protein NP_418757.1 4565310 R 83333 CDS b4339 948866 4567021..4567941 1 NC_000913.2 predicted transposase; 4567941 yjiP 948866 yjiP Escherichia coli K12 4567021 D 83333 CDS NP_418760.1 16132161 949089 complement(4568185..4569597) 1 NC_000913.2 putative regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: transcription [goid 0006350]; fused predicted DNA-binding transcriptional regulator/predicted aminotransferase 4569597 yjiR 949089 yjiR Escherichia coli K12 fused predicted DNA-binding transcriptional regulator/predicted aminotransferase NP_418760.1 4568185 R 83333 CDS NP_418761.1 16132162 948903 4569774..4569938 1 NC_000913.2 conserved protein 4569938 yjiS 948903 yjiS Escherichia coli K12 conserved protein NP_418761.1 4569774 D 83333 CDS b4342 945056 4570437..4571939 1 NC_000913.2 conserved protein; 4571939 yjiT 945056 yjiT Escherichia coli K12 4570437 D 83333 CDS b4486 2847669 4571942..4574878 1 NC_000913.2 pseudogene conserved hypothetical protein; 4574878 yjiV 2847669 yjiV Escherichia coli K12 4571942 D 83333 CDS NP_418765.1 16132166 948880 complement(4574935..4575981) 1 NC_000913.2 component of McrBC 5-methylcytosine restriction system, expands range of sequences restricted; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC 4575981 mcrC 948880 mcrC Escherichia coli K12 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC NP_418765.1 4574935 R 83333 CDS NP_418766.4 90111737 949122 complement(4575981..4577360) 1 NC_000913.2 component of McrBC 5-methylcytosine restriction system; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB 4577360 mcrB 949122 mcrB Escherichia coli K12 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB NP_418766.4 4575981 R 83333 CDS NP_418767.4 145698346 949088 complement(4577522..4577863) 1 NC_000913.2 GO_process: SOS response [goid 0009432]; conserved protein 4577863 yjiW 949088 yjiW Escherichia coli K12 conserved protein NP_418767.4 4577522 R 83333 CDS NP_418768.1 16132169 948867 complement(4578091..4579485) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; specificity determinant for hsdM and hsdR 4579485 hsdS 948867 hsdS Escherichia coli K12 specificity determinant for hsdM and hsdR NP_418768.1 4578091 R 83333 CDS NP_418769.1 16132170 948872 complement(4579482..4581071) 1 NC_000913.2 host modification; DNA methylase M; GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; DNA methylase M 4581071 hsdM 948872 hsdM Escherichia coli K12 DNA methylase M NP_418769.1 4579482 R 83333 CDS NP_418770.1 16132171 948878 complement(4581272..4584838) 1 NC_000913.2 host restriction; endonuclease R; GO_component: cytoplasm [goid 0005737]; GO_process: DNA catabolic process [goid 0006308]; endonuclease R 4584838 hsdR 948878 hsdR Escherichia coli K12 endonuclease R NP_418770.1 4581272 R 83333 CDS NP_418771.1 16132172 948898 4584972..4585886 1 NC_000913.2 restriction of methylated adenine; GO_component: cytoplasm [goid 0005737]; GO_process: DNA methylation [goid 0006306]; methylated adenine and cytosine restriction protein 4585886 mrr 948898 mrr Escherichia coli K12 methylated adenine and cytosine restriction protein NP_418771.1 4584972 D 83333 CDS NP_418772.4 90111738 948882 complement(4585932..4586888) 1 NC_000913.2 predicted GTPase 4586888 yjiA 948882 yjiA Escherichia coli K12 predicted GTPase NP_418772.4 4585932 R 83333 CDS NP_418773.1 16132174 949090 complement(4586899..4587102) 1 NC_000913.2 conserved protein 4587102 yjiX 949090 yjiX Escherichia coli K12 conserved protein NP_418773.1 4586899 R 83333 CDS NP_418774.2 90111739 948914 complement(4587152..4589302) 1 NC_000913.2 putative carbon starvation protein; GO_process: response to starvation [goid 0042594]; predicted inner membrane protein 4589302 yjiY 948914 yjiY Escherichia coli K12 predicted inner membrane protein NP_418774.2 4587152 R 83333 CDS NP_418775.1 16132176 948884 4589680..4591335 1 NC_000913.2 GO_component: organelle inner membrane [goid 0019866]; GO_process: taxis [goid 0042330]; methyl-accepting chemotaxis protein I, serine sensor receptor 4591335 tsr 948884 tsr Escherichia coli K12 methyl-accepting chemotaxis protein I, serine sensor receptor NP_418775.1 4589680 D 83333 CDS NP_418776.1 16132177 948879 complement(4591384..4592745) 1 NC_000913.2 putative transport protein, cryptic, orf, joins former yjiZ and yjjL; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted transporter 4592745 yjjL 948879 yjjL Escherichia coli K12 predicted transporter NP_418776.1 4591384 R 83333 CDS YP_026290.1 49176497 948881 complement(4592960..4593874) 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted DNA-binding transcriptional regulator 4593874 yjjM 948881 yjjM Escherichia coli K12 predicted DNA-binding transcriptional regulator YP_026290.1 4592960 R 83333 CDS NP_418778.3 145698347 948883 4594022..4595035 1 NC_000913.2 putative oxidoreductase; predicted oxidoreductase, Zn-dependent and NAD(P)-binding 4595035 yjjN 948883 yjjN Escherichia coli K12 predicted oxidoreductase, Zn-dependent and NAD(P)-binding NP_418778.3 4594022 D 83333 CDS NP_418779.2 90111741 948888 complement(4595173..4597464) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: phospholipid biosynthetic process [goid 0008654]; GO_process: glucan biosynthetic process [goid 0009250]; GO_process: response to osmotic stress [goid 0006970]; phosphoglycerol transferase I 4597464 mdoB 948888 mdoB Escherichia coli K12 phosphoglycerol transferase I NP_418779.2 4595173 R 83333 CDS NP_418780.2 90111742 948887 complement(4597718..4598212) 1 NC_000913.2 putative glycoprotein/receptor; conserved protein 4598212 yjjA 948887 yjjA Escherichia coli K12 conserved protein NP_418780.2 4597718 R 83333 CDS NP_418781.1 16132182 948864 complement(4598261..4598998) 1 NC_000913.2 chromosome replication; initiation and chain elongation; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA biosynthesis protein 4598998 dnaC 948864 dnaC Escherichia coli K12 DNA biosynthesis protein NP_418781.1 4598261 R 83333 CDS NP_418782.1 16132183 948813 complement(4599001..4599540) 1 NC_000913.2 DNA biosynthesis; primosomal protein i; GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA biosynthesis protein (primosomal protein I) 4599540 dnaT 948813 dnaT Escherichia coli K12 DNA biosynthesis protein (primosomal protein I) NP_418782.1 4599001 R 83333 CDS NP_418783.2 145698348 948811 complement(4599647..4600120) 1 NC_000913.2 conserved inner membrane protein 4600120 yjjB 948811 yjjB Escherichia coli K12 conserved inner membrane protein NP_418783.2 4599647 R 83333 CDS NP_418784.4 90111743 948812 complement(4600111..4600881) 1 NC_000913.2 putative structural protein; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; predicted inner membrane protein 4600881 yjjP 948812 yjjP Escherichia coli K12 predicted inner membrane protein NP_418784.4 4600111 R 83333 CDS NP_418785.1 16132186 948896 4601500..4602225 1 NC_000913.2 putative regulator; predicted DNA-binding transcriptional regulator 4602225 yjjQ 948896 yjjQ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418785.1 4601500 D 83333 CDS NP_418786.3 145698349 948889 4602333..4602860 1 NC_000913.2 2-component transcriptional regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: carbohydrate catabolic process [goid 0016052]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 4602860 bglJ 948889 bglJ Escherichia coli K12 DNA-binding transcriptional activator NP_418786.3 4602333 D 83333 CDS NP_418787.1 16132188 948891 complement(4602898..4603686) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: protein folding [goid 0006457]; ferric iron reductase involved in ferric hydroximate transport 4603686 fhuF 948891 fhuF Escherichia coli K12 ferric iron reductase involved in ferric hydroximate transport NP_418787.1 4602898 R 83333 CDS YP_588478.1 94541134 1450313 4603827..4604063 1 NC_000913.2 GO_component: integral to membrane [goid 0016021]; predicted protein 4604063 yjjZ 1450313 yjjZ Escherichia coli K12 predicted protein YP_588478.1 4603827 D 83333 CDS NP_418788.1 16132189 948892 complement(4604692..4605723) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: RNA modification [goid 0009451]; 16S rRNA m2G1207 methylase 4605723 rsmC 948892 rsmC Escherichia coli K12 16S rRNA m2G1207 methylase NP_418788.1 4604692 R 83333 CDS NP_418789.1 16132190 948890 4605826..4606239 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: DNA-dependent DNA replication [goid 0006261]; DNA polymerase III, psi subunit 4606239 holD 948890 holD Escherichia coli K12 DNA polymerase III, psi subunit NP_418789.1 4605826 D 83333 CDS NP_418790.1 16132191 948894 4606208..4606654 1 NC_000913.2 acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine; GO_component: cytosolic ribosome (sensu Bacteria) [goid 0009281]; GO_component: cytoplasm [goid 0005737]; GO_process: protein modification [goid 0006464]; acetylase for 30S ribosomal subunit protein S18 4606654 rimI 948894 rimI Escherichia coli K12 acetylase for 30S ribosomal subunit protein S18 NP_418790.1 4606208 D 83333 CDS NP_418791.1 16132192 948899 4606669..4607346 1 NC_000913.2 putative phosphatase; dUMP phosphatase 4607346 yjjG 948899 yjjG Escherichia coli K12 dUMP phosphatase NP_418791.1 4606669 D 83333 CDS NP_418792.1 16132193 948897 4607437..4609026 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: translation [goid 0006412]; peptide chain release factor RF-3 4609026 prfC 948897 prfC Escherichia coli K12 peptide chain release factor RF-3 NP_418792.1 4607437 D 83333 CDS NP_418793.1 16132194 948895 4609419..4610024 1 NC_000913.2 hyperosmotically inducible periplasmic protein; GO_component: periplasmic space [goid 0042597]; GO_process: response to osmotic stress [goid 0006970]; periplasmic protein 4610024 osmY 948895 osmY Escherichia coli K12 periplasmic protein NP_418793.1 4609419 D 83333 CDS YP_588479.2 145698350 1450298 4610151..4610312 1 NC_000913.2 GO_component: integral to membrane [goid 0016021]; predicted protein 4610312 ytjA 1450298 ytjA Escherichia coli K12 predicted protein YP_588479.2 4610151 D 83333 CDS NP_418794.1 16132195 948906 4610434..4611507 1 NC_000913.2 GO_process: regulation of transcription, DNA-dependent [goid 0006355]; predicted esterase 4611507 yjjU 948906 yjjU Escherichia coli K12 predicted esterase NP_418794.1 4610434 D 83333 CDS YP_026291.2 90111745 2847741 4611504..4612283 1 NC_000913.2 predicted DNase 4612283 yjjV 2847741 yjjV Escherichia coli K12 predicted DNase YP_026291.2 4611504 D 83333 CDS NP_418796.1 16132196 948905 complement(4612703..4613566) 1 NC_000913.2 putative activating enzyme; GO_process: anaerobic respiration [goid 0009061]; GO_process: protein modification [goid 0006464]; predicted pyruvate formate lyase activating enzyme 4613566 yjjW 948905 yjjW Escherichia coli K12 predicted pyruvate formate lyase activating enzyme NP_418796.1 4612703 R 83333 CDS NP_418797.1 16132197 948904 complement(4613538..4615088) 1 NC_000913.2 conserved protein 4615088 yjjI 948904 yjjI Escherichia coli K12 conserved protein NP_418797.1 4613538 R 83333 CDS NP_418798.1 16132198 948902 4615346..4616125 1 NC_000913.2 2-deoxyribose-5-phosphate aldolase; GO_component: cytoplasm [goid 0005737]; GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked 4616125 deoC 948902 deoC Escherichia coli K12 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked NP_418798.1 4615346 D 83333 CDS NP_418799.1 16132199 948901 4616252..4617574 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; thymidine phosphorylase 4617574 deoA 948901 deoA Escherichia coli K12 thymidine phosphorylase NP_418799.1 4616252 D 83333 CDS NP_418800.1 16132200 948910 4617626..4618849 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; phosphopentomutase 4618849 deoB 948910 deoB Escherichia coli K12 phosphopentomutase NP_418800.1 4617626 D 83333 CDS NP_418801.1 16132201 945654 4618906..4619625 1 NC_000913.2 GO_process: nucleobase, nucleoside and nucleotide interconversion [goid 0015949]; purine-nucleoside phosphorylase 4619625 deoD 945654 deoD Escherichia coli K12 purine-nucleoside phosphorylase NP_418801.1 4618906 D 83333 CDS NP_418802.1 16132202 944883 4619792..4621123 1 NC_000913.2 predicted DNA-binding transcriptional regulator 4621123 yjjJ 944883 yjjJ Escherichia coli K12 predicted DNA-binding transcriptional regulator NP_418802.1 4619792 D 83333 CDS NP_418803.1 16132203 944865 complement(4621124..4622140) 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: lipoprotein biosynthetic process [goid 0042158]; GO_process: tRNA aminoacylation for protein translation [goid 0006418]; lipoate-protein ligase A 4622140 lplA 944865 lplA Escherichia coli K12 lipoate-protein ligase A NP_418803.1 4621124 R 83333 CDS NP_418804.1 16132204 946089 complement(4622168..4622812) 1 NC_000913.2 GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; conserved protein 4622812 ytjB 946089 ytjB Escherichia coli K12 conserved protein NP_418804.1 4622168 R 83333 CDS NP_418805.1 16132205 948913 4622918..4623886 1 NC_000913.2 GO_component: cytoplasm [goid 0005737]; GO_process: glycine biosynthetic process [goid 0006545]; GO_process: L-serine biosynthetic process [goid 0006564]; 3-phosphoserine phosphatase 4623886 serB 948913 serB Escherichia coli K12 3-phosphoserine phosphatase NP_418805.1 4622918 D 83333 CDS NP_418806.1 16132206 948912 4623935..4625317 1 NC_000913.2 probable ATP-dependent protease; predicted repair protein 4625317 radA 948912 radA Escherichia coli K12 predicted repair protein NP_418806.1 4623935 D 83333 CDS NP_418807.4 90111746 948911 4625338..4626570 1 NC_000913.2 probable nadAB transcriptional regulator; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: NAD biosynthetic process [goid 0009435]; GO_process: transcription [goid 0006350]; bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase 4626570 nadR 948911 nadR Escherichia coli K12 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase NP_418807.4 4625338 D 83333 CDS NP_418808.1 16132208 948909 complement(4626878..4628545) 1 NC_000913.2 putative ATP-binding component of a transport system; GO_component: cytoplasm [goid 0005737]; fused predicted transporter subunits of ABC superfamily: ATP-binding components 4628545 yjjK 948909 yjjK Escherichia coli K12 fused predicted transporter subunits of ABC superfamily: ATP-binding components NP_418808.1 4626878 R 83333 CDS NP_418809.4 90111747 948908 4628756..4630693 1 NC_000913.2 soluble lytic murein transglycosylase; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: periplasmic space [goid 0042597]; GO_process: peptidoglycan biosynthetic process [goid 0009252]; lytic murein transglycosylase, soluble 4630693 slt 948908 slt Escherichia coli K12 lytic murein transglycosylase, soluble NP_418809.4 4628756 D 83333 CDS NP_418810.1 16132210 948917 4630783..4631109 1 NC_000913.2 regulator for trp operon and aroH; trp aporepressor; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_process: tryptophan biosynthetic process [goid 0000162]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional repressor, tryptophan-binding 4631109 trpR 948917 trpR Escherichia coli K12 DNA-binding transcriptional repressor, tryptophan-binding NP_418810.1 4630783 D 83333 CDS NP_418811.2 90111748 948919 complement(4631256..4631768) 1 NC_000913.2 thiamin metabolism associated protein 4631768 yjjX 948919 yjjX Escherichia coli K12 thiamin metabolism associated protein NP_418811.2 4631256 R 83333 CDS NP_418812.1 16132212 948918 4631820..4632467 1 NC_000913.2 phosphoglyceromutase 2; GO_component: cytoplasm [goid 0005737]; GO_process: glycolysis [goid 0006096]; GO_process: gluconeogenesis [goid 0006094]; phosphoglyceromutase 2, co-factor independent 4632467 ytjC 948918 ytjC Escherichia coli K12 phosphoglyceromutase 2, co-factor independent NP_418812.1 4631820 D 83333 CDS NP_418813.1 16132213 948916 complement(4632464..4633333) 1 NC_000913.2 right origin-binding protein; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: DNA-dependent DNA replication [goid 0006261]; GO_process: transcription [goid 0006350]; DNA-binding transcriptional activator 4633333 rob 948916 rob Escherichia coli K12 DNA-binding transcriptional activator NP_418813.1 4632464 R 83333 CDS NP_418814.1 16132214 948920 4633544..4634017 1 NC_000913.2 conserved protein 4634017 creA 948920 creA Escherichia coli K12 conserved protein NP_418814.1 4633544 D 83333 CDS NP_418815.1 16132215 948922 4634030..4634719 1 NC_000913.2 catabolic regulation response regulator; GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with CreC 4634719 creB 948922 creB Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with CreC NP_418815.1 4634030 D 83333 CDS NP_418816.1 16132216 948609 4634719..4636143 1 NC_000913.2 catabolite repression sensor kinase for PhoB; alternative sensor for pho regulon; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; GO_process: protein modification [goid 0006464]; sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon 4636143 creC 948609 creC Escherichia coli K12 sensory histidine kinase in two-component regulatory system with CreB or PhoB, regulator of the CreBC regulon NP_418816.1 4634719 D 83333 CDS NP_418817.1 16132217 948868 4636201..4637553 1 NC_000913.2 tolerance to colicin E2; GO_component: peptidoglycan-based cell wall [goid 0009274]; GO_component: organelle inner membrane [goid 0019866]; inner membrane protein 4637553 creD 948868 creD Escherichia coli K12 inner membrane protein NP_418817.1 4636201 D 83333 CDS NP_418818.1 16132218 948874 complement(4637613..4638329) 1 NC_000913.2 negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA); GO_component: cytoplasm [goid 0005737]; GO_function: transcriptional repressor activity [goid 0016564]; GO_function: transcriptional activator activity [goid 0016563]; GO_process: transcription [goid 0006350]; DNA-binding response regulator in two-component regulatory system with ArcB or CpxA 4638329 arcA 948874 arcA Escherichia coli K12 DNA-binding response regulator in two-component regulatory system with ArcB or CpxA NP_418818.1 4637613 R 83333 CDS NP_418819.1 16132219 948925 4638425..4638565 1 NC_000913.2 predicted protein 4638565 yjjY 948925 yjjY Escherichia coli K12 predicted protein NP_418819.1 4638425 D 83333 CDS NP_418820.1 16132220 948924 4638965..4639651 1 NC_000913.2 GO_process: RNA modification [goid 0009451]; predicted rRNA methyltransferase 4639651 yjtD 948924 yjtD Escherichia coli K12 predicted rRNA methyltransferase NP_418820.1 4638965 D 83333 CDS