-- dump date 20140619_081812 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 536056000001 SEQ_END SEQ_END NC_017625.1 4630707 4630707 DR NC_017625.1; contig end 4630707..4630707 Escherichia coli DH1 YP_006089991.1 CDS EcDH1_0001 NC_017625.1 33 1436 D KEGG: ssn:SSON_3652 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA domain; Chromosomal replication initiator DnaA; SMART: AAA ATPase; chromosomal replication initiator protein DnaA 33..1436 Escherichia coli DH1 12707848 YP_006089992.1 CDS EcDH1_0002 NC_017625.1 1441 2541 D KEGG: sdy:SDY_4183 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; DNA polymerase III subunit beta 1441..2541 Escherichia coli DH1 12707850 YP_006089993.1 CDS EcDH1_0003 NC_017625.1 2541 3614 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: ssn:SSON_3650 recombination protein F; DNA replication and repair protein RecF 2541..3614 Escherichia coli DH1 12707852 YP_006089994.1 CDS EcDH1_0004 NC_017625.1 3643 6057 D KEGG: ssn:SSON_3649 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3643..6057 Escherichia coli DH1 12707854 YP_006089995.1 CDS EcDH1_0005 NC_017625.1 6297 6695 D PFAM: protein of unknown function DUF937; KEGG: ssn:SSON_3648 hypothetical protein; hypothetical protein 6297..6695 Escherichia coli DH1 12707888 YP_006089996.1 CDS EcDH1_0006 NC_017625.1 6810 7622 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ssn:SSON_3647 predicted hydrolase; cof family hydrolase 6810..7622 Escherichia coli DH1 12707890 YP_006089997.1 CDS EcDH1_0007 NC_017625.1 7668 8324 R KEGG: sfl:SF3768 hypothetical protein; hypothetical protein complement(7668..8324) Escherichia coli DH1 12707892 YP_006089998.1 CDS EcDH1_0008 NC_017625.1 8602 9291 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfx:S4002 regulator protein for dgo operon; GntR family transcriptional regulator 8602..9291 Escherichia coli DH1 12707894 YP_006089999.1 CDS EcDH1_0009 NC_017625.1 9288 10166 D PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: ssn:SSON_3644 2-oxo-3-deoxygalactonate kinase; 2-dehydro-3-deoxygalactonokinase 9288..10166 Escherichia coli DH1 12707896 YP_006090000.1 CDS EcDH1_0010 NC_017625.1 10150 10767 D PFAM: KDPG and KHG aldolase; KEGG: ent:Ent638_0008 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; KDPG and KHG aldolase 10150..10767 Escherichia coli DH1 12703567 YP_006090001.1 CDS EcDH1_0011 NC_017625.1 10764 11912 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ent:Ent638_0009 galactonate dehydratase; mandelate racemase/muconate lactonizing protein 10764..11912 Escherichia coli DH1 12703568 YP_006090002.1 CDS EcDH1_0012 NC_017625.1 12032 13324 D TIGRFAM: phosphoglycerate transporter; d-galactonate transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_3642 D-galactonate transport; d-galactonate transporter 12032..13324 Escherichia coli DH1 12703569 YP_006090003.1 CDS EcDH1_0013 NC_017625.1 13321 14385 R KEGG: ssn:SSON_3641 putative oxidoreductase; putative oxidoreductase complement(13321..14385) Escherichia coli DH1 12703570 YP_006090004.1 CDS EcDH1_0014 NC_017625.1 14486 15700 D KEGG: ssn:SSON_3640 hypothetical protein; hypothetical protein 14486..15700 Escherichia coli DH1 12703571 YP_006090005.1 CDS EcDH1_0015 NC_017625.1 15702 16034 R PFAM: protein of unknown function DUF1375; KEGG: sbc:SbBS512_E4231 hypothetical protein; hypothetical protein complement(15702..16034) Escherichia coli DH1 12703572 YP_006090006.1 CDS EcDH1_0016 NC_017625.1 16340 16753 D PFAM: heat shock protein Hsp20; KEGG: sdy:SDY_4173 heat shock protein IbpA; heat shock protein Hsp20 16340..16753 Escherichia coli DH1 12703573 YP_006090007.1 CDS EcDH1_0017 NC_017625.1 16865 17293 D PFAM: heat shock protein Hsp20; KEGG: sdy:SDY_4172 heat shock chaperone IbpB; heat shock protein Hsp20 16865..17293 Escherichia coli DH1 12703574 YP_006090008.1 CDS EcDH1_0019 NC_017625.1 17489 19150 D TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: sfx:S3992 hypothetical protein; YidE/YbjL duplication 17489..19150 Escherichia coli DH1 12703576 YP_006090009.1 CDS EcDH1_0020 NC_017625.1 19147 19863 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sdy:SDY_4170 putative transcriptional regulator; GntR family transcriptional regulator complement(19147..19863) Escherichia coli DH1 12703577 YP_006090010.1 CDS EcDH1_0023 NC_017625.1 22586 23479 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sfx:S3987 putative AraC-type regulatory protein; AraC family transcriptional regulator complement(22586..23479) Escherichia coli DH1 12703580 YP_006090011.1 CDS EcDH1_0024 NC_017625.1 23646 25361 D TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: sfv:SFV_3831 putative symporter YidK; SSS sodium solute transporter superfamily protein 23646..25361 Escherichia coli DH1 12703581 YP_006090012.1 CDS EcDH1_0025 NC_017625.1 25358 26851 D PFAM: sulfatase; KEGG: sdy:SDY_4162 putative sulfatase; sulfatase 25358..26851 Escherichia coli DH1 12703582 YP_006090013.1 CDS EcDH1_0026 NC_017625.1 26898 27347 R KEGG: ssn:SSON_3631 hypothetical protein; hypothetical protein complement(26898..27347) Escherichia coli DH1 12703583 YP_006090014.1 CDS EcDH1_0027 NC_017625.1 27455 27802 D PFAM: protein of unknown function DUF202; KEGG: sdy:SDY_4160 hypothetical protein; isocitrate dehydrogenase 27455..27802 Escherichia coli DH1 12703584 YP_006090015.1 CDS EcDH1_0028 NC_017625.1 27792 28154 D KEGG: sbc:SbBS512_E4243 hypothetical protein; hypothetical protein 27792..28154 Escherichia coli DH1 12703585 YP_006090016.1 CDS EcDH1_0029 NC_017625.1 28151 28648 D KEGG: ssn:SSON_3628 putative transcriptional regulator; putative transcriptional regulator 28151..28648 Escherichia coli DH1 12703586 YP_006090017.1 CDS EcDH1_0030 NC_017625.1 28656 29807 R TIGRFAM: multidrug/H+ antiporter, major facilitator superfamily (MFS); PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_3627 multidrug resistance protein D; multidrug/H+ antiporter complement(28656..29807) Escherichia coli DH1 12703587 YP_006090018.1 CDS EcDH1_0031 NC_017625.1 30497 30787 R KEGG: ses:SARI_03851 hypothetical protein; hypothetical protein complement(30497..30787) Escherichia coli DH1 12703588 YP_006090019.1 CDS EcDH1_0032 NC_017625.1 30978 32666 D TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sbc:SbBS512_E4248 acetolactate synthase, large subunit, isozyme I; acetolactate synthase large subunit 30978..32666 Escherichia coli DH1 12703589 YP_006090020.1 CDS EcDH1_0033 NC_017625.1 32670 32960 D TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: ssn:SSON_3624 acetolactate synthase 1 regulatory subunit; acetolactate synthase small subunit 32670..32960 Escherichia coli DH1 12703590 YP_006090021.1 CDS EcDH1_0034 NC_017625.1 33036 33626 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sbc:SbBS512_E4250 transcriptional regulatory protein UhpA; LuxR family two component transcriptional regulator 33036..33626 Escherichia coli DH1 12703591 YP_006090022.1 CDS EcDH1_0035 NC_017625.1 33626 35128 D PFAM: ATP-binding region ATPase domain protein; MASE1 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sbo:SBO_3701 sensory histidine kinase UhpB; histidine kinase 33626..35128 Escherichia coli DH1 12703592 YP_006090023.1 CDS EcDH1_0036 NC_017625.1 35138 36457 D TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3702 regulatory protein UhpC; phosphoglycerate transporter 35138..36457 Escherichia coli DH1 12703593 YP_006090024.1 CDS EcDH1_0037 NC_017625.1 36595 37986 D TIGRFAM: phosphoglycerate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3703 sugar phosphate antiporter; phosphoglycerate transporter 36595..37986 Escherichia coli DH1 12703594 YP_006090025.1 CDS EcDH1_0038 NC_017625.1 38032 39798 R KEGG: ssn:SSON_3619 cryptic adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase; adenine deaminase complement(38032..39798) Escherichia coli DH1 12703595 YP_006090026.1 CDS EcDH1_0039 NC_017625.1 39973 41307 D PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sbc:SbBS512_E4255 inorganic anion transporter, sulfate permease (SulP) family; xanthine/uracil/vitamin C permease 39973..41307 Escherichia coli DH1 12703596 YP_006090027.1 CDS EcDH1_0040 NC_017625.1 41360 41812 D PFAM: protein of unknown function DUF1198; KEGG: sdy:SDY_4144 hypothetical protein; hypothetical protein 41360..41812 Escherichia coli DH1 12703597 YP_006090028.1 CDS EcDH1_0041 NC_017625.1 41975 43213 D PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3847 ribonucleoside transporter; major facilitator superfamily protein 41975..43213 Escherichia coli DH1 12703598 YP_006090029.1 CDS EcDH1_0042 NC_017625.1 43254 43547 R KEGG: sbo:SBO_3710 putative transport protein; putative transport protein complement(43254..43547) Escherichia coli DH1 12703599 YP_006090030.1 CDS EcDH1_0043 NC_017625.1 43552 43671 R hypothetical protein complement(43552..43671) Escherichia coli DH1 12703600 YP_006090031.1 CDS EcDH1_0044 NC_017625.1 43769 44587 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: sdy:SDY_4499 cytoplasmic membrane lipoprotein-28; lipoprotein 43769..44587 Escherichia coli DH1 12703601 YP_006090032.1 CDS EcDH1_0045 NC_017625.1 44591 45514 R TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sdy:SDY_4498 putative permease transporter; carboxylate/amino acid/amine transporter complement(44591..45514) Escherichia coli DH1 12703602 YP_006090033.1 CDS EcDH1_0046 NC_017625.1 45625 46809 R TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4114 sugar efflux transporter C; sugar efflux transporter complement(45625..46809) Escherichia coli DH1 12703603 YP_006090034.1 CDS EcDH1_0047 NC_017625.1 47191 47337 R KEGG: ypb:YPTS_4098 hypothetical protein; hypothetical protein complement(47191..47337) Escherichia coli DH1 12703604 YP_006090035.1 CDS EcDH1_0048 NC_017625.1 47833 49215 D TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sbc:SbBS512_E4108 sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family; sugar (Glycoside-Pentoside-Hexuronide) transporter 47833..49215 Escherichia coli DH1 12703606 YP_006090036.1 CDS EcDH1_0049 NC_017625.1 49225 51543 D PFAM: glycoside hydrolase family 31; KEGG: sfx:S4073 alpha-xylosidase YicI; glycoside hydrolase family protein 49225..51543 Escherichia coli DH1 12703607 YP_006090037.1 CDS EcDH1_0050 NC_017625.1 51596 53305 R PFAM: AsmA family protein; KEGG: sfx:S4074 hypothetical protein; AsmA family protein complement(51596..53305) Escherichia coli DH1 12703608 YP_006090038.1 CDS EcDH1_0051 NC_017625.1 53426 54817 R TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3751 putative transport protein; uracil-xanthine permease complement(53426..54817) Escherichia coli DH1 12703609 YP_006090039.1 CDS EcDH1_0052 NC_017625.1 55097 56302 D PFAM: sodium/glutamate symporter; KEGG: sdy:SDY_4085 glutamate transport; sodium/glutamate symporter 55097..56302 Escherichia coli DH1 12703610 YP_006090040.1 CDS EcDH1_0053 NC_017625.1 56471 58552 R KEGG: sfv:SFV_3877 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecG complement(56471..58552) Escherichia coli DH1 12703611 YP_006090041.1 CDS EcDH1_0054 NC_017625.1 58558 59247 R PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbo:SBO_3726 tRNA guanosine-2'-O-methyltransferase; tRNA guanosine-2'-O-methyltransferase complement(58558..59247) Escherichia coli DH1 12703612 YP_006090042.1 CDS EcDH1_0055 NC_017625.1 59254 61362 R KEGG: sbc:SbBS512_E4101 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase; TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA complement(59254..61362) Escherichia coli DH1 12703613 YP_006090043.1 CDS EcDH1_0056 NC_017625.1 61381 61656 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: cko:CKO_05106 DNA-directed RNA polymerase subunit omega; DNA-directed RNA polymerase subunit omega complement(61381..61656) Escherichia coli DH1 12703614 YP_006090044.1 CDS EcDH1_0057 NC_017625.1 61711 62334 R KEGG: sbc:SbBS512_E4099 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(61711..62334) Escherichia coli DH1 12703615 YP_006090045.1 CDS EcDH1_0058 NC_017625.1 62592 64274 D KEGG: ssn:SSON_3759 NAD-dependent DNA ligase LigB; PFAM: NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: NAD-dependent DNA ligase; DNA ligase (NAD(+)) 62592..64274 Escherichia coli DH1 12703616 YP_006090046.1 CDS EcDH1_0059 NC_017625.1 64271 64888 R PFAM: protein of unknown function UPF0126; KEGG: sdy:SDY_4077 hypothetical protein; hypothetical protein complement(64271..64888) Escherichia coli DH1 12703617 YP_006090047.1 CDS EcDH1_0060 NC_017625.1 65178 66002 R KEGG: sfv:SFV_3885 DNA-damage-inducible protein D; DNA-damage-inducible protein D complement(65178..66002) Escherichia coli DH1 12703618 YP_006090048.1 CDS EcDH1_0061 NC_017625.1 66223 67086 R PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: ssn:SSON_3762 hypothetical protein; YicC domain-containing protein complement(66223..67086) Escherichia coli DH1 12703619 YP_006090049.1 CDS EcDH1_0062 NC_017625.1 67213 67929 D KEGG: sbc:SbBS512_E4068 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 67213..67929 Escherichia coli DH1 12703620 YP_006090050.1 CDS EcDH1_0063 NC_017625.1 67995 68636 D KEGG: sfv:SFV_3888 orotate phosphoribosyltransferase; TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; orotate phosphoribosyltransferase 67995..68636 Escherichia coli DH1 12703621 YP_006090051.1 CDS EcDH1_0064 NC_017625.1 68673 69269 R PFAM: regulatory protein TetR; KEGG: sdy:SDY_4071 nucleoid occlusion protein; TetR family transcriptional regulator complement(68673..69269) Escherichia coli DH1 12703622 YP_006090052.1 CDS EcDH1_0065 NC_017625.1 69376 69834 R KEGG: sdy:SDY_4070 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut complement(69376..69834) Escherichia coli DH1 12703623 YP_006090053.1 CDS EcDH1_0066 NC_017625.1 69812 71032 R KEGG: sfx:S4090 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(69812..71032) Escherichia coli DH1 12703624 YP_006090054.1 CDS EcDH1_0067 NC_017625.1 71204 71872 D PFAM: DNA repair protein RadC; KEGG: sbo:SBO_3640 DNA repair protein RadC; DNA repair protein RadC 71204..71872 Escherichia coli DH1 12703625 YP_006090055.1 CDS EcDH1_0068 NC_017625.1 72089 72325 D PFAM: ribosomal protein L28; KEGG: kpn:KPN_03977 50S ribosomal protein L28; 50S ribosomal protein L28 72089..72325 Escherichia coli DH1 12703626 YP_006090056.1 CDS EcDH1_0069 NC_017625.1 72346 72513 D PFAM: ribosomal protein L33; KEGG: cko:CKO_05094 50S ribosomal protein L33; 50S ribosomal protein L33 72346..72513 Escherichia coli DH1 12703627 YP_006090057.1 CDS EcDH1_0070 NC_017625.1 72611 73420 D KEGG: sbc:SbBS512_E4060 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 72611..73420 Escherichia coli DH1 12703628 YP_006090058.1 CDS EcDH1_0071 NC_017625.1 73459 73938 R KEGG: sbc:SbBS512_E4059 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(73459..73938) Escherichia coli DH1 12703629 YP_006090059.1 CDS EcDH1_0072 NC_017625.1 73946 75223 R PFAM: glycosyl transferase group 1; Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: ssn:SSON_3774 3-deoxy-D-manno-octulosonic-acid transferase; Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein complement(73946..75223) Escherichia coli DH1 12703630 YP_006090060.1 CDS EcDH1_0073 NC_017625.1 75629 76699 D TIGRFAM: lipopolysaccharide heptosyltransferase III; PFAM: glycosyl transferase family 9; KEGG: sea:SeAg_B3940 putative lipopolysaccharide heptosyltransferase III; lipopolysaccharide heptosyltransferase III 75629..76699 Escherichia coli DH1 12703631 YP_006090061.1 CDS EcDH1_0074 NC_017625.1 76696 77820 D PFAM: glycosyl transferase group 1; KEGG: sfv:SFV_3900 LPS alpha1,3-glucosyltransferase; group 1 glycosyl transferase 76696..77820 Escherichia coli DH1 12703632 YP_006090062.1 CDS EcDH1_0075 NC_017625.1 77813 78610 D PFAM: lipopolysaccharide kinase; KEGG: sdy:SDY_4060 putative LPS biosynthesis enzyme; lipopolysaccharide kinase 77813..78610 Escherichia coli DH1 12703633 YP_006090063.1 CDS EcDH1_0076 NC_017625.1 78647 79582 D KEGG: par:Psyc_1209 hypothetical protein; hypothetical protein 78647..79582 Escherichia coli DH1 12703634 YP_006090064.1 CDS EcDH1_0077 NC_017625.1 79626 80705 D PFAM: glycosyl transferase group 1; KEGG: sea:SeAg_B3937 lipopolysaccharide 1,6-galactosyltransferase; group 1 glycosyl transferase 79626..80705 Escherichia coli DH1 12703635 YP_006090065.1 CDS EcDH1_0078 NC_017625.1 80705 81724 D PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; KEGG: ses:SARI_03923 hypothetical protein; Lipopolysaccharide 3-alpha-galactosyltransferase 80705..81724 Escherichia coli DH1 12703636 YP_006090066.1 CDS EcDH1_0079 NC_017625.1 81764 82780 D PFAM: glycosyl transferase family 8; Glycosyl transferase family 8 domain protein; KEGG: sek:SSPA3332 lipopolysaccharide 1,2-glucosyltransferase; Lipopolysaccharide glucosyltransferase I 81764..82780 Escherichia coli DH1 12703637 YP_006090067.1 CDS EcDH1_0080 NC_017625.1 82798 83496 D PFAM: lipopolysaccharide core biosynthesis protein; KEGG: sew:SeSA_A3915 lipopolysaccharide core biosynthesis protein RfaY; lipopolysaccharide core biosynthesis protein 82798..83496 Escherichia coli DH1 12703638 YP_006090068.1 CDS EcDH1_0081 NC_017625.1 83567 84418 D KEGG: sec:SC3638 lipopolysaccharide core biosynthesis protein; lipopolysaccharide core biosynthesis protein 83567..84418 Escherichia coli DH1 12703639 YP_006090069.1 CDS EcDH1_0082 NC_017625.1 84451 85524 D PFAM: glycosyl transferase family 9; KEGG: kpe:KPK_0128 putative lipopolysaccharide 1,2-N-acetylglucosaminetransferase RfaK; Lipopolysaccharide N-acetylglucosaminyltransferase 84451..85524 Escherichia coli DH1 12703640 YP_006090070.1 CDS EcDH1_0083 NC_017625.1 85556 86815 R PFAM: O-antigen polymerase; KEGG: cko:CKO_05081 hypothetical protein; O-antigen polymerase complement(85556..86815) Escherichia coli DH1 12703641 YP_006090071.1 CDS EcDH1_0084 NC_017625.1 86825 87784 R TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase family 9; KEGG: sdy:SDY_4053 ADP-heptose:LPS heptosyl transferase I; lipopolysaccharide heptosyltransferase I complement(86825..87784) Escherichia coli DH1 12703642 YP_006090072.1 CDS EcDH1_0085 NC_017625.1 87788 88834 R TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: sdy:SDY_4052 ADP-heptose:LPS heptosyltransferase II; lipopolysaccharide heptosyltransferase II complement(87788..88834) Escherichia coli DH1 12703643 YP_006090073.1 CDS EcDH1_0086 NC_017625.1 88844 89776 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: sdy:SDY_4051 ADP-L-glycero-D-mannoheptose-6-epimerase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(88844..89776) Escherichia coli DH1 12703644 YP_006090074.1 CDS EcDH1_0087 NC_017625.1 90065 90937 D PFAM: conserved hypothetical protein; KEGG: sfv:SFV_3910 hypothetical protein; hypothetical protein 90065..90937 Escherichia coli DH1 12703645 YP_006090075.1 CDS EcDH1_0088 NC_017625.1 91212 92408 D KEGG: sfx:S4110 2-amino-3-ketobutyrate coenzyme A ligase; TIGRFAM: 2-amino-3-ketobutyrate coenzyme A ligase; PFAM: aminotransferase class V; glycine hydroxymethyltransferase; aminotransferase class I and II; aminotransferase class-III; 2-amino-3-ketobutyrate coenzyme A ligase 91212..92408 Escherichia coli DH1 12703646 YP_006090076.1 CDS EcDH1_0089 NC_017625.1 92418 93443 D TIGRFAM: L-threonine 3-dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbc:SbBS512_E4044 L-threonine 3-dehydrogenase; L-threonine 3-dehydrogenase 92418..93443 Escherichia coli DH1 12703647 YP_006090077.1 CDS EcDH1_0090 NC_017625.1 93682 94716 D PFAM: glycosyl transferase family 2; KEGG: sbc:SbBS512_E4042 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 93682..94716 Escherichia coli DH1 12703648 YP_006090078.1 CDS EcDH1_0091 NC_017625.1 94703 95662 R PFAM: protein of unknown function DUF610 YibQ; KEGG: sbc:SbBS512_E4043 polysaccharide deacetylase family protein; hypothetical protein complement(94703..95662) Escherichia coli DH1 12703649 YP_006090079.1 CDS EcDH1_0092 NC_017625.1 95666 96925 R PFAM: Peptidase M23; KEGG: ssn:SSON_3792 hypothetical protein; peptidase M23 complement(95666..96925) Escherichia coli DH1 12703650 YP_006090080.1 CDS EcDH1_0093 NC_017625.1 96959 98503 R KEGG: sbc:SbBS512_E4040 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; PFAM: metalloenzyme domain protein; BPG-independent PGAM domain protein; phosphoglycerate mutase complement(96959..98503) Escherichia coli DH1 12703651 YP_006090081.1 CDS EcDH1_0094 NC_017625.1 98748 99179 D PFAM: Rhodanese domain protein; KEGG: sbc:SbBS512_E4039 rhodanese domain protein; Rhodanese domain-containing protein 98748..99179 Escherichia coli DH1 12703652 YP_006090082.1 CDS EcDH1_0095 NC_017625.1 99321 99572 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: sdy:SDY_4043 glutaredoxin 3; glutaredoxin 3 99321..99572 Escherichia coli DH1 12703653 YP_006090083.1 CDS EcDH1_0096 NC_017625.1 99635 100102 D TIGRFAM: protein-export protein SecB; PFAM: protein export chaperone SecB; KEGG: sbc:SbBS512_E4037 protein-export chaperone SecB; protein-export protein SecB 99635..100102 Escherichia coli DH1 12703654 YP_006090084.1 CDS EcDH1_0097 NC_017625.1 100102 101121 D PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: sdy:SDY_4041 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; glycerol-3-phosphate dehydrogenase 100102..101121 Escherichia coli DH1 12703655 YP_006090085.1 CDS EcDH1_0098 NC_017625.1 101201 102022 D KEGG: sbc:SbBS512_E4035 serine O-acetyltransferase; TIGRFAM: serine O-acetyltransferase; PFAM: transferase hexapeptide repeat containing protein; serine acetyltransferase domain protein; serine O-acetyltransferase 101201..102022 Escherichia coli DH1 12703656 YP_006090086.1 CDS EcDH1_0099 NC_017625.1 102075 102548 R TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbc:SbBS512_E4034 RNA methyltransferase, TrmH family, group 2; TrmH family RNA methyltransferase complement(102075..102548) Escherichia coli DH1 12703657 YP_006090087.1 CDS EcDH1_0100 NC_017625.1 102746 103936 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: sbc:SbBS512_E4031 L-lactate dehydrogenase (cytochrome); FMN-dependent alpha-hydroxy acid dehydrogenase complement(102746..103936) Escherichia coli DH1 12703658 YP_006090088.1 CDS EcDH1_0101 NC_017625.1 103933 104709 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbo:SBO_3609 DNA-binding transcriptional repressor; GntR family transcriptional regulator complement(103933..104709) Escherichia coli DH1 12703659 YP_006090089.1 CDS EcDH1_0102 NC_017625.1 104709 106364 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: sbc:SbBS512_E4029 L-lactate permease; L-lactate transport complement(104709..106364) Escherichia coli DH1 12703660 YP_006090090.1 CDS EcDH1_0103 NC_017625.1 106736 107098 R KEGG: sbc:SbBS512_E4020 hypothetical protein; hypothetical protein complement(106736..107098) Escherichia coli DH1 12703661 YP_006090091.1 CDS EcDH1_0104 NC_017625.1 107383 107592 D KEGG: sbc:SbBS512_E4019 hypothetical protein; hypothetical protein 107383..107592 Escherichia coli DH1 12703662 YP_006090092.1 CDS EcDH1_0105 NC_017625.1 107604 108191 R PFAM: Mannitol repressor; KEGG: sbc:SbBS512_E4018 mannitol operon repressor; mannitol repressor, MtlR complement(107604..108191) Escherichia coli DH1 12703663 YP_006090093.1 CDS EcDH1_0106 NC_017625.1 108191 109339 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfv:SFV_3937 mannitol-1-phosphate 5-dehydrogenase; mannitol dehydrogenase domain-containing protein complement(108191..109339) Escherichia coli DH1 12703664 YP_006090094.1 CDS EcDH1_0107 NC_017625.1 109569 111482 R TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbc:SbBS512_E4016 PTS system, mannitol-specific IIABC component; PTS system mannitol-specific transporter subunit IIC complement(109569..111482) Escherichia coli DH1 12703665 YP_006090095.1 CDS EcDH1_0108 NC_017625.1 112019 112381 D KEGG: ssn:SSON_3810 hypothetical protein; hypothetical protein 112019..112381 Escherichia coli DH1 12703666 YP_006090096.1 CDS EcDH1_0109 NC_017625.1 112384 113520 D PFAM: secretion protein HlyD family protein; KEGG: sbo:SBO_3595 hypothetical protein; secretion protein HlyD family protein 112384..113520 Escherichia coli DH1 12703667 YP_006090097.1 CDS EcDH1_0112 NC_017625.1 115125 115586 R KEGG: sbo:SBO_3594 hypothetical protein; hypothetical protein complement(115125..115586) Escherichia coli DH1 12703670 YP_006090098.1 CDS EcDH1_0114 NC_017625.1 116584 117426 R PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: amr:AM1_4076 hypothetical protein; PBS lyase HEAT domain-containing protein repeat-containing protein complement(116584..117426) Escherichia coli DH1 12703672 YP_006090099.1 CDS EcDH1_0115 NC_017625.1 117447 121580 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein complement(117447..121580) Escherichia coli DH1 12703673 YP_006090100.1 CDS EcDH1_0116 NC_017625.1 121808 122416 D PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E4007 glutathione S-transferase; glutathione S-transferase 121808..122416 Escherichia coli DH1 12703674 YP_006090101.1 CDS EcDH1_0117 NC_017625.1 122514 123905 D PFAM: L-seryl-tRNA selenium transferase; KEGG: sfx:S4139 selenocysteine synthase; L-seryl-tRNA(Sec) selenium transferase 122514..123905 Escherichia coli DH1 12703675 YP_006090102.1 CDS EcDH1_0118 NC_017625.1 123902 125746 D TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: sfv:SFV_3943 selenocysteinyl-tRNA-specific translation factor; selenocysteine-specific translation elongation factor 123902..125746 Escherichia coli DH1 12703676 YP_006090103.1 CDS EcDH1_0119 NC_017625.1 125936 127087 D PFAM: iron-containing alcohol dehydrogenase; KEGG: sbc:SbBS512_E4004 alcohol dehydrogenase II; iron-containing alcohol dehydrogenase 125936..127087 Escherichia coli DH1 12703677 YP_006090104.1 CDS EcDH1_0120 NC_017625.1 127252 128790 D PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E4003 aldehyde dehydrogenase B; aldehyde dehydrogenase 127252..128790 Escherichia coli DH1 12703678 YP_006090105.1 CDS EcDH1_0121 NC_017625.1 129009 129173 R KEGG: sfv:SFV_3946 hypothetical protein; hypothetical protein complement(129009..129173) Escherichia coli DH1 12703679 YP_006090106.1 CDS EcDH1_0122 NC_017625.1 129335 129658 D KEGG: sfv:SFV_3947 hypothetical protein; hypothetical protein 129335..129658 Escherichia coli DH1 12703680 YP_006090107.1 CDS EcDH1_0123 NC_017625.1 129664 130800 D PFAM: secretion protein HlyD family protein; KEGG: sfv:SFV_3948 hypothetical protein; secretion protein HlyD family protein 129664..130800 Escherichia coli DH1 12703681 YP_006090108.1 CDS EcDH1_0124 NC_017625.1 130797 131771 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_0144 LysR family transcriptional regulator; LysR family transcriptional regulator complement(130797..131771) Escherichia coli DH1 12703682 YP_006090109.1 CDS EcDH1_0125 NC_017625.1 131895 132635 D PFAM: MltA-interacting MipA family protein; KEGG: sfv:SFV_3952 putative outer membrane protein; MltA-interacting MipA family protein 131895..132635 Escherichia coli DH1 12703683 YP_006090110.1 CDS EcDH1_0127 NC_017625.1 132982 133677 R KEGG: sfv:SFV_3956 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; L-ribulose-5-phosphate 4-epimerase complement(132982..133677) Escherichia coli DH1 12703685 YP_006090111.1 CDS EcDH1_0128 NC_017625.1 133671 134531 R KEGG: sfv:SFV_3957 putative L-xylulose 5-phosphate 3-epimerase; TIGRFAM: hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hexulose-6-phosphate isomerase complement(133671..134531) Escherichia coli DH1 12703686 YP_006090112.1 CDS EcDH1_0129 NC_017625.1 134524 135186 R PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sfv:SFV_3958 3-keto-L-gulonate-6-phosphate decarboxylase; 3-dehydro-L-gulonate-6-phosphate decarboxylase complement(134524..135186) Escherichia coli DH1 12703687 YP_006090113.1 CDS EcDH1_0130 NC_017625.1 135183 136679 R PFAM: carbohydrate kinase FGGY; KEGG: sfv:SFV_3959 L-xylulose kinase, cryptic; carbohydrate kinase FGGY complement(135183..136679) Escherichia coli DH1 12703688 YP_006090114.1 CDS EcDH1_0131 NC_017625.1 136683 137669 R TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sfv:SFV_3960 putative solute-binding transport protein; TRAP dicarboxylate transporter subunit DctP complement(136683..137669) Escherichia coli DH1 12703689 YP_006090115.1 CDS EcDH1_0132 NC_017625.1 137682 138959 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sfv:SFV_3961 hypothetical protein; TRAP dicarboxylate transporter subunit DctM complement(137682..138959) Escherichia coli DH1 12703690 YP_006090116.1 CDS EcDH1_0133 NC_017625.1 138962 139435 R PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: sbc:SbBS512_E3945 TRAP transporter, DctQ-like membrane protein; tripartite AtP-independent periplasmic transporter subunit DctQ complement(138962..139435) Escherichia coli DH1 12703691 YP_006090117.1 CDS EcDH1_0134 NC_017625.1 139553 140020 R PFAM: conserved hypothetical protein; KEGG: cko:CKO_05034 hypothetical protein; hypothetical protein complement(139553..140020) Escherichia coli DH1 12703692 YP_006090118.1 CDS EcDH1_0135 NC_017625.1 140032 141030 R PFAM: Malate/L-lactate dehydrogenase; KEGG: sfx:S4150 2,3-diketo-L-gulonate reductase; malate/L-lactate dehydrogenase complement(140032..141030) Escherichia coli DH1 12703693 YP_006090119.1 CDS EcDH1_0136 NC_017625.1 141231 142079 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sbo:SBO_3582 putative regulator; IclR family transcriptional regulator 141231..142079 Escherichia coli DH1 12703694 YP_006090120.1 CDS EcDH1_0137 NC_017625.1 142181 142654 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_3581 hypothetical protein; 4Fe-4S ferredoxin 142181..142654 Escherichia coli DH1 12703695 YP_006090121.1 CDS EcDH1_0138 NC_017625.1 142805 144058 R PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E3950 putative valine--pyruvate aminotransferase; class I and II aminotransferase complement(142805..144058) Escherichia coli DH1 12703696 YP_006090122.1 CDS EcDH1_0139 NC_017625.1 144236 146266 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfx:S4154 periplasmic alpha-amylase precursor; alpha amylase complement(144236..146266) Escherichia coli DH1 12703697 YP_006090123.1 CDS EcDH1_0140 NC_017625.1 146586 147410 D PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: sbc:SbBS512_E3952 protein bax; mannosyl-glycoprotein endo-beta-N-acetylglucosamidase 146586..147410 Escherichia coli DH1 12703698 YP_006090124.1 CDS EcDH1_0141 NC_017625.1 147606 148784 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E3953 xylose operon regulatory protein; AraC family transcriptional regulator complement(147606..148784) Escherichia coli DH1 12703699 YP_006090125.1 CDS EcDH1_0142 NC_017625.1 148862 150043 R PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3954 D-xylose ABC transporter, permease protein; monosaccharide-transporting ATPase complement(148862..150043) Escherichia coli DH1 12703700 YP_006090126.1 CDS EcDH1_0143 NC_017625.1 150021 151562 R KEGG: sbo:SBO_3575 putative ATP-binding protein of xylose transport system; TIGRFAM: D-xylose ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; D-xylose ABC transporter ATPase complement(150021..151562) Escherichia coli DH1 12703701 YP_006090127.1 CDS EcDH1_0144 NC_017625.1 151640 152632 R KEGG: sfv:SFV_3974 D-xylose transporter subunit XylF; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator; D-xylose ABC transporter periplasmic substrate-binding protein complement(151640..152632) Escherichia coli DH1 12703702 YP_006090128.1 CDS EcDH1_0145 NC_017625.1 152998 154320 D KEGG: sbc:SbBS512_E3959 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase 152998..154320 Escherichia coli DH1 12703703 YP_006090129.1 CDS EcDH1_0146 NC_017625.1 154392 155846 D TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sfv:SFV_3976 xylulokinase; xylulokinase 154392..155846 Escherichia coli DH1 12703704 YP_006090130.1 CDS EcDH1_0147 NC_017625.1 156015 156356 D PFAM: YiaAB two helix domain protein; KEGG: sbo:SBO_3571 hypothetical protein; YiaAB two helix domain-containing protein 156015..156356 Escherichia coli DH1 12703705 YP_006090131.1 CDS EcDH1_0148 NC_017625.1 156402 156839 D PFAM: YiaAB two helix domain protein; KEGG: sbo:SBO_3570 hypothetical protein; YiaAB two helix domain-containing protein 156402..156839 Escherichia coli DH1 12703706 YP_006090132.1 CDS EcDH1_0149 NC_017625.1 156881 157876 R PFAM: acyltransferase 3; KEGG: sbo:SBO_3569 hypothetical protein; acyltransferase 3 complement(156881..157876) Escherichia coli DH1 12703707 YP_006090133.1 CDS EcDH1_0150 NC_017625.1 158051 158350 D KEGG: sbc:SbBS512_E3964 hypothetical protein; hypothetical protein 158051..158350 Escherichia coli DH1 12703708 YP_006090134.1 CDS EcDH1_0151 NC_017625.1 158445 159356 D KEGG: cko:CKO_05016 glycyl-tRNA synthetase subunit alpha; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha 158445..159356 Escherichia coli DH1 12703709 YP_006090135.1 CDS EcDH1_0152 NC_017625.1 159366 161435 D KEGG: ssn:SSON_3830 glycyl-tRNA synthetase subunit beta; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase subunit beta 159366..161435 Escherichia coli DH1 12703710 YP_006090136.1 CDS EcDH1_0153 NC_017625.1 161714 162565 R PFAM: Integrase catalytic region; KEGG: sfv:SFV_3530 IS150 ORF2; integrase catalytic subunit complement(161714..162565) Escherichia coli DH1 12703711 YP_006090137.1 CDS EcDH1_0154 NC_017625.1 162562 163083 R KEGG: sfx:S1483 IS103 orf; IS103 orf complement(162562..163083) Escherichia coli DH1 12703712 YP_006090138.1 CDS EcDH1_0155 NC_017625.1 163163 163315 D PFAM: Hok/gef cell toxic protein; KEGG: ssn:SSON_3831 small toxic polypeptide; Hok/gef cell toxic protein 163163..163315 Escherichia coli DH1 12703713 YP_006090139.1 CDS EcDH1_0156 NC_017625.1 163502 163714 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cko:CKO_05012 major cold shock protein; cold-shock protein complement(163502..163714) Escherichia coli DH1 12703714 YP_006090140.1 CDS EcDH1_0157 NC_017625.1 163995 164285 R SMART: helix-turn-helix domain protein; KEGG: sdy:SDY_4348 putative transcriptional regulator; XRE family transcriptional regulator complement(163995..164285) Escherichia coli DH1 12703715 YP_006090141.1 CDS EcDH1_0158 NC_017625.1 164719 165429 D KEGG: sdy:SDY_4349 hypothetical protein; hypothetical protein 164719..165429 Escherichia coli DH1 12703716 YP_006090142.1 CDS EcDH1_0159 NC_017625.1 165479 166453 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E3973 2-ketogluconate reductase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(165479..166453) Escherichia coli DH1 12703717 YP_006090143.1 CDS EcDH1_0160 NC_017625.1 166557 167216 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: ssn:SSON_3836 predicted outer membrane lipoprotein; OmpA/MotB domain-containing protein complement(166557..167216) Escherichia coli DH1 12703718 YP_006090144.1 CDS EcDH1_0161 NC_017625.1 167369 169702 D TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sbc:SbBS512_E3976 biotin sulfoxide reductase; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 167369..169702 Escherichia coli DH1 12703719 YP_006090145.1 CDS EcDH1_0162 NC_017625.1 169671 170111 R PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E3975 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(169671..170111) Escherichia coli DH1 12703720 YP_006090146.1 CDS EcDH1_0163 NC_017625.1 170108 170671 R KEGG: ssn:SSON_3841 3-methyl-adenine DNA glycosylase I; TIGRFAM: DNA-3-methyladenine glycosylase I; PFAM: methyladenine glycosylase; DNA-3-methyladenine glycosylase I complement(170108..170671) Escherichia coli DH1 12703721 YP_006090147.1 CDS EcDH1_0164 NC_017625.1 170829 171527 D KEGG: sbc:SbBS512_E3978 hypothetical protein; hypothetical protein 170829..171527 Escherichia coli DH1 12703722 YP_006090148.1 CDS EcDH1_0165 NC_017625.1 171756 172964 D TIGRFAM: Oxalate/Formate Antiporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_3843 putative resistance protein; Oxalate/Formate Antiporter 171756..172964 Escherichia coli DH1 12703723 YP_006090149.1 CDS EcDH1_0166 NC_017625.1 173288 174979 D PFAM: sulfatase; KEGG: sbc:SbBS512_E3983 membrane-associated sulfatase; sulfatase 173288..174979 Escherichia coli DH1 12703724 YP_006090150.1 CDS EcDH1_0167 NC_017625.1 175288 175554 D hypothetical protein 175288..175554 Escherichia coli DH1 12703726 YP_006090151.1 CDS EcDH1_0168 NC_017625.1 176058 177665 D PFAM: extracellular solute-binding protein family 5; KEGG: sdy:SDY_4567 dipeptide transport protein; 4-phytase 176058..177665 Escherichia coli DH1 12703727 YP_006090152.1 CDS EcDH1_0169 NC_017625.1 177973 178992 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_4566 dipeptide transporter permease DppB; alkaline phosphatase 177973..178992 Escherichia coli DH1 12703728 YP_006090153.1 CDS EcDH1_0170 NC_017625.1 179002 179904 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_3541 dipeptide transporter; binding-protein-dependent transport system inner membrane protein 179002..179904 Escherichia coli DH1 12703729 YP_006090154.1 CDS EcDH1_0171 NC_017625.1 179915 180898 D KEGG: sfv:SFV_3546 dipeptide transporter ATP-binding subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 179915..180898 Escherichia coli DH1 12703730 YP_006090155.1 CDS EcDH1_0172 NC_017625.1 180895 181899 D KEGG: sbc:SbBS512_E3991 dipeptide ABC transporter, ATP-binding protein DppF; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 180895..181899 Escherichia coli DH1 12703731 YP_006090156.1 CDS EcDH1_0173 NC_017625.1 181929 183200 R TIGRFAM: serine transporter; KEGG: ssn:SSON_3851 putative transporter protein; serine transporter complement(181929..183200) Escherichia coli DH1 12703732 YP_006090157.1 CDS EcDH1_0174 NC_017625.1 183508 183783 D KEGG: sfl:SF3572 hypothetical protein; hypothetical protein 183508..183783 Escherichia coli DH1 12703733 YP_006090158.1 CDS EcDH1_0175 NC_017625.1 183870 185549 R TIGRFAM: cellulose synthase operon protein YhjU; KEGG: sfv:SFV_3549 hypothetical protein; cellulose synthase operon protein YhjU complement(183870..185549) Escherichia coli DH1 12703734 YP_006090159.1 CDS EcDH1_0176 NC_017625.1 185546 185737 R KEGG: sbc:SbBS512_E3999 cellulose biosynthesis protein BcsF; cellulose biosynthesis protein BcsF complement(185546..185737) Escherichia coli DH1 12703735 YP_006090160.1 CDS EcDH1_0177 NC_017625.1 185734 187293 R TIGRFAM: cellulose biosynthesis protein BcsE; KEGG: ssn:SSON_3854 putative protease; cellulose biosynthesis protein BcsE complement(185734..187293) Escherichia coli DH1 12703736 YP_006090161.1 CDS EcDH1_0178 NC_017625.1 187578 187766 D KEGG: sbo:SBO_3534 hypothetical protein; hypothetical protein 187578..187766 Escherichia coli DH1 12703737 YP_006090162.1 CDS EcDH1_0179 NC_017625.1 187802 188530 D TIGRFAM: cellulose synthase operon protein YhjQ; PFAM: YhjQ family protein; KEGG: sbc:SbBS512_E3940 YhjQ protein; cellulose synthase operon protein YhjQ 187802..188530 Escherichia coli DH1 12703738 YP_006090163.1 CDS EcDH1_0180 NC_017625.1 188527 191145 D KEGG: sdy:SDY_4553 cellulose synthase catalytic subunit; TIGRFAM: cellulose synthase catalytic subunit (UDP-forming); PFAM: glycosyl transferase family 2; type IV pilus assembly PilZ; cellulose synthase catalytic subunit 188527..191145 Escherichia coli DH1 12703739 YP_006090164.1 CDS EcDH1_0181 NC_017625.1 191192 193495 D PFAM: cellulose synthase subunit B; KEGG: sbo:SBO_3531 cellulose synthase regulator protein; cellulose synthase subunit B 191192..193495 Escherichia coli DH1 12703740 YP_006090165.1 CDS EcDH1_0182 NC_017625.1 193502 194608 D PFAM: glycoside hydrolase family 8; KEGG: sbo:SBO_3530 endo-1,4-D-glucanase; cellulase 193502..194608 Escherichia coli DH1 12703741 YP_006090166.1 CDS EcDH1_0183 NC_017625.1 194590 198063 D PFAM: TPR repeat-containing protein; cellulose synthase operon C domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sbo:SBO_3529 putative oxidoreductase subunit; cellulose synthase operon C domain-containing protein 194590..198063 Escherichia coli DH1 12703742 YP_006090167.1 CDS EcDH1_0184 NC_017625.1 198184 200133 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase HAMP region domain protein; KEGG: sbc:SbBS512_E3935 putative diguanylate cyclase; diguanylate cyclase/phosphodiesterase with extracellular sensor 198184..200133 Escherichia coli DH1 12703743 YP_006090168.1 CDS EcDH1_0185 NC_017625.1 200316 201602 D PFAM: sodium:dicarboxylate symporter; KEGG: sbc:SbBS512_E3934 aerobic C4-dicarboxylate transport protein; sodium:dicarboxylate symporter 200316..201602 Escherichia coli DH1 12703744 YP_006090169.1 CDS EcDH1_0186 NC_017625.1 201823 203319 D PFAM: peptidase M16 domain protein; KEGG: sdy:SDY_4547 hypothetical protein; peptidase M16 domain-containing protein 201823..203319 Escherichia coli DH1 12703745 YP_006090170.1 CDS EcDH1_0187 NC_017625.1 203415 204344 R PFAM: PfkB domain protein; KEGG: ssn:SSON_3865 ketodeoxygluconokinase; PfkB domain-containing protein complement(203415..204344) Escherichia coli DH1 12703746 YP_006090171.1 CDS EcDH1_0188 NC_017625.1 204576 205343 D PFAM: EAL domain protein; KEGG: sdy:SDY_4545 EAL domain containing protein involved in flagellar function; diguanylate phosphodiesterase 204576..205343 Escherichia coli DH1 12703747 YP_006090172.1 CDS EcDH1_0189 NC_017625.1 205398 207473 D PFAM: AsmA family protein; KEGG: sbo:SBO_3523 hypothetical protein; AsmA family protein 205398..207473 Escherichia coli DH1 12703748 YP_006090173.1 CDS EcDH1_0190 NC_017625.1 207655 208977 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_3868 putative transport protein; metabolite/H+ symporter, major facilitator superfamily (MFS) complement(207655..208977) Escherichia coli DH1 12703749 YP_006090174.1 CDS EcDH1_0191 NC_017625.1 209388 210401 R TIGRFAM: ribonuclease; PFAM: ribonuclease BN; KEGG: sbc:SbBS512_E3927 putative ribonuclease; ribonuclease complement(209388..210401) Escherichia coli DH1 12703750 YP_006090175.1 CDS EcDH1_0192 NC_017625.1 210450 211421 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3520 putative transcriptional regulator LysR-type; LysR family transcriptional regulator complement(210450..211421) Escherichia coli DH1 12703751 YP_006090176.1 CDS EcDH1_0193 NC_017625.1 211869 212471 D PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: sbc:SbBS512_E3925 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 211869..212471 Escherichia coli DH1 12703752 YP_006090177.1 CDS EcDH1_0194 NC_017625.1 212522 214171 R PFAM: glycoside hydrolase family 37; KEGG: sbc:SbBS512_E3922 cytoplasmic trehalase TreF; Alpha,alpha-trehalase complement(212522..214171) Escherichia coli DH1 12703753 YP_006090178.1 CDS EcDH1_0195 NC_017625.1 214575 215972 D PFAM: Di-haem cytochrome c peroxidase; KEGG: sbo:SBO_3517 putative cytochrome c peroxidase; cytochrome-c peroxidase 214575..215972 Escherichia coli DH1 12703754 YP_006090179.1 CDS EcDH1_0196 NC_017625.1 216183 217583 D TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: sbo:SBO_3516 glutamate decarboxylase isozyme; glutamate decarboxylase 216183..217583 Escherichia coli DH1 12703755 YP_006090180.1 CDS EcDH1_0197 NC_017625.1 217953 218777 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E3914 transcriptional regulator GadX; AraC family transcriptional regulator 217953..218777 Escherichia coli DH1 12703756 YP_006090181.1 CDS EcDH1_0198 NC_017625.1 219145 219873 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sfv:SFV_3987 putative AraC-type regulatory protein; AraC family transcriptional regulator 219145..219873 Escherichia coli DH1 12703757 YP_006090182.1 CDS EcDH1_0199 NC_017625.1 220236 223349 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sdy:SDY_3537 putative transport system permease protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(220236..223349) Escherichia coli DH1 12703758 YP_006090183.1 CDS EcDH1_0200 NC_017625.1 223374 224531 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbo:SBO_3512 multidrug resistance efflux protein MdtE; RND family efflux transporter MFP subunit complement(223374..224531) Escherichia coli DH1 12703759 YP_006090184.1 CDS EcDH1_0201 NC_017625.1 224591 224869 D hypothetical protein 224591..224869 Escherichia coli DH1 12703760 YP_006090185.1 CDS EcDH1_0202 NC_017625.1 224870 225397 R KEGG: ssn:SSON_3574 hypothetical protein; LuxR family transcriptional regulator complement(224870..225397) Escherichia coli DH1 12703761 YP_006090186.1 CDS EcDH1_0203 NC_017625.1 226196 226768 R KEGG: sbc:SbBS512_E3909 putative HdeD protein; putative HdeD protein complement(226196..226768) Escherichia coli DH1 12703762 YP_006090187.1 CDS EcDH1_0204 NC_017625.1 227023 227355 D PFAM: HNS-dependent expression A; KEGG: sdy:SDY_3543 stress-response and acid-resistance protein; HNS-dependent expression A 227023..227355 Escherichia coli DH1 12703763 YP_006090188.1 CDS EcDH1_0205 NC_017625.1 227459 227797 D KEGG: sbc:SbBS512_E3907 HdeB protein; HdeB protein 227459..227797 Escherichia coli DH1 12703764 YP_006090189.1 CDS EcDH1_0206 NC_017625.1 227933 228508 D PFAM: MgtC/SapB transporter; KEGG: sbc:SbBS512_E3906 putative Mg2+ transporter-C (MgtC) family protein; MgtC/SapB transporter 227933..228508 Escherichia coli DH1 12703765 YP_006090190.1 CDS EcDH1_0207 NC_017625.1 228550 229080 R PFAM: regulatory protein LuxR; KEGG: ssn:SSON_3579 hypothetical protein; LuxR family transcriptional regulator complement(228550..229080) Escherichia coli DH1 12703766 YP_006090191.1 CDS EcDH1_0208 NC_017625.1 229236 229802 R TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: sbc:SbBS512_E3904 outer membrane lipoprotein, Slp family; outer membrane lipoprotein, Slp family complement(229236..229802) Escherichia coli DH1 12703767 YP_006090192.1 CDS EcDH1_0210 NC_017625.1 230601 231581 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 230601..231581 Escherichia coli DH1 12703769 YP_006090193.1 CDS EcDH1_0211 NC_017625.1 233101 233526 R KEGG: sbc:SbBS512_E3818 arsenate reductase; TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase complement(233101..233526) Escherichia coli DH1 12703770 YP_006090194.1 CDS EcDH1_0212 NC_017625.1 233539 234828 R TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: sbo:SBO_3500 arsenical pump membrane protein; arsenical pump membrane protein complement(233539..234828) Escherichia coli DH1 12703771 YP_006090195.1 CDS EcDH1_0213 NC_017625.1 234882 235235 R PFAM: regulatory protein ArsR; KEGG: ssn:SSON_3736 DNA-binding transcriptional repressor; ArsR family transcriptional regulator complement(234882..235235) Escherichia coli DH1 12703772 YP_006090196.1 CDS EcDH1_0214 NC_017625.1 235930 236058 D KEGG: sbc:SbBS512_E3821 hypothetical protein; hypothetical protein 235930..236058 Escherichia coli DH1 12703773 YP_006090197.1 CDS EcDH1_0215 NC_017625.1 236112 237464 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ssn:SSON_3735 glutathione reductase; glutathione-disulfide reductase complement(236112..237464) Escherichia coli DH1 12703774 YP_006090198.1 CDS EcDH1_0216 NC_017625.1 237536 238378 R PFAM: protein of unknown function DUF519; KEGG: sbo:SBO_3497 hypothetical protein; hypothetical protein complement(237536..238378) Escherichia coli DH1 12703775 YP_006090199.1 CDS EcDH1_0217 NC_017625.1 238581 240623 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sbc:SbBS512_E3824 oligopeptidase A; oligopeptidase A 238581..240623 Escherichia coli DH1 12703776 YP_006090200.1 CDS EcDH1_0218 NC_017625.1 240631 241383 D PFAM: protein of unknown function DUF548; KEGG: ssn:SSON_3732 putative methyltransferase; hypothetical protein 240631..241383 Escherichia coli DH1 12703777 YP_006090201.1 CDS EcDH1_0219 NC_017625.1 241432 242901 R KEGG: ssn:SSON_3731 inner membrane transporter YhiP; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter complement(241432..242901) Escherichia coli DH1 12703778 YP_006090202.1 CDS EcDH1_0220 NC_017625.1 243218 243652 R PFAM: UspA domain protein; KEGG: cko:CKO_04943 hypothetical protein; UspA domain-containing protein complement(243218..243652) Escherichia coli DH1 12703779 YP_006090203.1 CDS EcDH1_0221 NC_017625.1 244043 244378 D KEGG: sdy:SDY_3568 universal stress protein UspB; universal stress protein UspB 244043..244378 Escherichia coli DH1 12703780 YP_006090204.1 CDS EcDH1_0222 NC_017625.1 244622 246121 R PFAM: phosphate transporter; KEGG: sdy:SDY_3569 low-affinity phosphate transport; phosphate transporter complement(244622..246121) Escherichia coli DH1 12703781 YP_006090205.1 CDS EcDH1_0223 NC_017625.1 246353 247555 D PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E3830 pyridine nucleotide-disulfide oxidoreductase family protein; hypothetical protein 246353..247555 Escherichia coli DH1 12703782 YP_006090206.1 CDS EcDH1_0224 NC_017625.1 247870 248922 R KEGG: sbo:SBO_3489 hypothetical protein; hypothetical protein complement(247870..248922) Escherichia coli DH1 12703783 YP_006090207.1 CDS EcDH1_0226 NC_017625.1 251173 252795 D KEGG: sfx:S4259 hypothetical protein; hypothetical protein 251173..252795 Escherichia coli DH1 12703785 YP_006090208.1 CDS EcDH1_0227 NC_017625.1 253161 254228 D PFAM: secretion protein HlyD family protein; KEGG: sfv:SFV_3488 hypothetical protein; secretion protein HlyD family protein 253161..254228 Escherichia coli DH1 12703786 YP_006090209.1 CDS EcDH1_0228 NC_017625.1 254225 256960 D PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sbc:SbBS512_E3836 ABC transporter, ATP binding protein; ABC transporter 254225..256960 Escherichia coli DH1 12703787 YP_006090210.1 CDS EcDH1_0229 NC_017625.1 256960 258084 D PFAM: ABC-2 type transporter; KEGG: sbc:SbBS512_E3837 ABC transporter, ATP-binding protein; ABC transporter 256960..258084 Escherichia coli DH1 12703788 YP_006090211.1 CDS EcDH1_0230 NC_017625.1 258249 259385 R PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein complement(258249..259385) Escherichia coli DH1 12703789 YP_006090212.1 CDS EcDH1_0232 NC_017625.1 259981 260364 R KEGG: fjo:Fjoh_2679 hypothetical protein; hypothetical protein complement(259981..260364) Escherichia coli DH1 12703791 YP_006090213.1 CDS EcDH1_0233 NC_017625.1 260336 264571 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein complement(260336..264571) Escherichia coli DH1 12703792 YP_006090214.1 CDS EcDH1_0234 NC_017625.1 264774 265175 R TIGRFAM: nickel-responsive transcriptional regulator NikR; PFAM: CopG domain protein DNA-binding domain protein; NikR nickel binding; KEGG: sdy:SDY_3636 nickel responsive regulator; CopG family transcriptional regulator complement(264774..265175) Escherichia coli DH1 12703793 YP_006090215.1 CDS EcDH1_0235 NC_017625.1 265181 265987 R KEGG: ssn:SSON_3718 nickel transporter ATP-binding protein; TIGRFAM: nickel import ATP-binding protein NikE; PFAM: ABC transporter related; SMART: AAA ATPase; nickel import ATP-binding protein NikE complement(265181..265987) Escherichia coli DH1 12703794 YP_006090216.1 CDS EcDH1_0236 NC_017625.1 265984 266748 R KEGG: sdy:SDY_3634 nickel transporter ATP-binding protein; TIGRFAM: nickel import ATP-binding protein NikD; PFAM: ABC transporter related; SMART: AAA ATPase; nickel import ATP-binding protein NikD complement(265984..266748) Escherichia coli DH1 12703795 YP_006090217.1 CDS EcDH1_0237 NC_017625.1 266748 267581 R TIGRFAM: nickel ABC transporter, permease subunit NikC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_3716 nickel transporter permease NikC; nickel ABC transporter permease NikC complement(266748..267581) Escherichia coli DH1 12703796 YP_006090218.1 CDS EcDH1_0238 NC_017625.1 267578 268522 R TIGRFAM: nickel ABC transporter, permease subunit NikB; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E3844 nickel ABC transporter, permease protein NikB; nickel ABC transporter permease NikB complement(267578..268522) Escherichia coli DH1 12703797 YP_006090219.1 CDS EcDH1_0239 NC_017625.1 268522 270096 R KEGG: sfx:S4269 periplasmic binding protein for nickel; TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein family 5; nickel ABC transporter periplasmic nickel-binding protein complement(268522..270096) Escherichia coli DH1 12703798 YP_006090220.1 CDS EcDH1_0240 NC_017625.1 270207 270794 R PFAM: 4'-phosphopantetheinyl transferase; KEGG: sbo:SBO_3472 holo-(acyl carrier protein) synthase 2; 4'-phosphopantetheinyl transferase complement(270207..270794) Escherichia coli DH1 12703799 YP_006090221.1 CDS EcDH1_0241 NC_017625.1 270849 271898 R PFAM: protein of unknown function UPF0118; KEGG: sbc:SbBS512_E3848 hypothetical protein; hypothetical protein complement(270849..271898) Escherichia coli DH1 12703800 YP_006090222.1 CDS EcDH1_0242 NC_017625.1 271997 273247 D PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3849 transporter, major facilitator family; major facilitator superfamily protein 271997..273247 Escherichia coli DH1 12703801 YP_006090223.1 CDS EcDH1_0243 NC_017625.1 273251 273808 R KEGG: sdy:SDY_3623 hypothetical protein; hypothetical protein complement(273251..273808) Escherichia coli DH1 12703802 YP_006090224.1 CDS EcDH1_0244 NC_017625.1 273881 274546 R TIGRFAM: conserved hypothetical protein; PFAM: protein of unknown function DUF165; KEGG: sbc:SbBS512_E3851 hypothetical protein; hypothetical protein complement(273881..274546) Escherichia coli DH1 12703803 YP_006090225.1 CDS EcDH1_0245 NC_017625.1 274767 275012 D PFAM: SirA family protein; KEGG: sdy:SDY_3621 cell developmental protein SirA; SirA family protein 274767..275012 Escherichia coli DH1 12703804 YP_006090226.1 CDS EcDH1_0246 NC_017625.1 275114 277312 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: ssn:SSON_3707 zinc/cadmium/mercury/lead-transporting ATPase; heavy metal translocating P-type ATPase complement(275114..277312) Escherichia coli DH1 12703805 YP_006090227.1 CDS EcDH1_0247 NC_017625.1 277386 278012 R PFAM: YhhN family protein; KEGG: sbc:SbBS512_E3854 hypothetical protein; hypothetical protein complement(277386..278012) Escherichia coli DH1 12703806 YP_006090228.1 CDS EcDH1_0248 NC_017625.1 278153 278512 D KEGG: sbo:SBO_3464 putative receptor; putative receptor 278153..278512 Escherichia coli DH1 12703807 YP_006090229.1 CDS EcDH1_0249 NC_017625.1 278515 278784 R PFAM: protein of unknown function DUF1145; KEGG: sdy:SDY_3617 hypothetical protein; hypothetical protein complement(278515..278784) Escherichia coli DH1 12703808 YP_006090230.1 CDS EcDH1_0250 NC_017625.1 278774 279370 R TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: sbo:SBO_3462 predicted methyltransferase; methyltransferase complement(278774..279370) Escherichia coli DH1 12703809 YP_006090231.1 CDS EcDH1_0251 NC_017625.1 279520 281013 D KEGG: sdy:SDY_3615 cell division protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 279520..281013 Escherichia coli DH1 12703810 YP_006090232.1 CDS EcDH1_0252 NC_017625.1 281016 281684 D KEGG: sdy:SDY_3614 cell division protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; Type II (General) Secretory Pathway (IISP) Family protein; PFAM: ABC transporter related; SMART: AAA ATPase; Type II (General) Secretory Pathway (IISP) Family protein 281016..281684 Escherichia coli DH1 12703811 YP_006090233.1 CDS EcDH1_0253 NC_017625.1 281677 282735 D TIGRFAM: protein insertion ABC transporter, inner membrane subunit FtsX; PFAM: protein of unknown function DUF214; KEGG: sdy:SDY_3613 cell division protein FtsX; protein insertion ABC transporter inner membrane subunit FtsX 281677..282735 Escherichia coli DH1 12703812 YP_006090234.1 CDS EcDH1_0254 NC_017625.1 282980 283834 D TIGRFAM: RNA polymerase sigma factor RpoH; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sdy:SDY_3612 RNA polymerase factor sigma-32; RNA polymerase sigma-32 subunit RpoH 282980..283834 Escherichia coli DH1 12703813 YP_006090235.1 CDS EcDH1_0255 NC_017625.1 284105 285208 D PFAM: Extracellular ligand-binding receptor; KEGG: sbo:SBO_3457 high-affinity amino acid transport system periplasmic binding protein; extracellular ligand-binding receptor 284105..285208 Escherichia coli DH1 12703814 YP_006090236.1 CDS EcDH1_0256 NC_017625.1 285396 285779 R PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3610 hypothetical protein; N-acetyltransferase GCN5 complement(285396..285779) Escherichia coli DH1 12703815 YP_006090237.1 CDS EcDH1_0257 NC_017625.1 286203 287312 D PFAM: Extracellular ligand-binding receptor; KEGG: sbc:SbBS512_E3864 high-affinity branched-chain amino acid ABC transporter, periplasmic leucine-specific-binding protein LivK; extracellular ligand-binding receptor 286203..287312 Escherichia coli DH1 12703816 YP_006090238.1 CDS EcDH1_0258 NC_017625.1 287360 288286 D PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3865 high-affinity branched-chain amino acid transport system permease protein LivH; inner-membrane translocator 287360..288286 Escherichia coli DH1 12703817 YP_006090239.1 CDS EcDH1_0259 NC_017625.1 288283 289560 D PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E3866 high-affinity branched-chain amino acid ABC transporter, permease protein LivM; inner-membrane translocator 288283..289560 Escherichia coli DH1 12703818 YP_006090240.1 CDS EcDH1_0260 NC_017625.1 289557 290324 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E3867 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivG; ABC transporter 289557..290324 Escherichia coli DH1 12703819 YP_006090241.1 CDS EcDH1_0261 NC_017625.1 290326 291039 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_3692 leucine/isoleucine/valine transporter ATP-binding subunit; ABC transporter 290326..291039 Escherichia coli DH1 12703820 YP_006090242.1 CDS EcDH1_0262 NC_017625.1 291438 292754 D PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_3456 glycerol-3-phosphate transporter periplasmic binding protein; extracellular solute-binding protein 291438..292754 Escherichia coli DH1 12703821 YP_006090243.1 CDS EcDH1_0263 NC_017625.1 292852 293739 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_3455 glycerol-3-phosphate transporter permease; binding-protein-dependent transport system inner membrane protein 292852..293739 Escherichia coli DH1 12703822 YP_006090244.1 CDS EcDH1_0264 NC_017625.1 293736 294581 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E3872 sn-glycerol 3-phosphate transport protein; binding-protein-dependent transport system inner membrane protein 293736..294581 Escherichia coli DH1 12703823 YP_006090245.1 CDS EcDH1_0265 NC_017625.1 294583 295653 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sbo:SBO_3446 glycerol-3-phosphate transporter ATP-binding subunit; ABC transporter 294583..295653 Escherichia coli DH1 12703824 YP_006090246.1 CDS EcDH1_0266 NC_017625.1 295650 296393 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ssn:SSON_3687 cytoplasmic glycerophosphodiester phosphodiesterase; Glycerophosphodiester phosphodiesterase 295650..296393 Escherichia coli DH1 12703825 YP_006090247.1 CDS EcDH1_0267 NC_017625.1 296380 296820 R KEGG: sbc:SbBS512_E3874 hypothetical protein; hypothetical protein complement(296380..296820) Escherichia coli DH1 12703826 YP_006090248.1 CDS EcDH1_0268 NC_017625.1 296940 298682 D KEGG: sfv:SFV_3450 gamma-glutamyltranspeptidase periplasmic precursor; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 296940..298682 Escherichia coli DH1 12703827 YP_006090249.1 CDS EcDH1_0269 NC_017625.1 298720 299004 R KEGG: sbc:SbBS512_E3877 hypothetical protein; hypothetical protein complement(298720..299004) Escherichia coli DH1 12703828 YP_006090250.1 CDS EcDH1_0270 NC_017625.1 299204 299359 R hypothetical protein complement(299204..299359) Escherichia coli DH1 12703829 YP_006090251.1 CDS EcDH1_0272 NC_017625.1 300309 300725 R KEGG: kpe:KPK_2247 hypothetical protein; hypothetical protein complement(300309..300725) Escherichia coli DH1 12703831 YP_006090252.1 CDS EcDH1_0273 NC_017625.1 300722 301900 R TIGRFAM: type VI secretion system effector, Hcp1 family; PFAM: HNH endonuclease; protein of unknown function DUF796; KEGG: sbc:SbBS512_E3883 HNH endonuclease domain protein; type VI secretion system effector complement(300722..301900) Escherichia coli DH1 12703832 YP_006090253.1 CDS EcDH1_0274 NC_017625.1 302137 302625 R PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E3884 acetyltransferase, GNAT family; N-acetyltransferase GCN5 complement(302137..302625) Escherichia coli DH1 12703833 YP_006090254.1 CDS EcDH1_0275 NC_017625.1 302958 303995 D PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ssn:SSON_3682 putative regulator; oxidoreductase domain-containing protein 302958..303995 Escherichia coli DH1 12703834 YP_006090255.1 CDS EcDH1_0276 NC_017625.1 304118 304813 D PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: sbc:SbBS512_E3886 pirin family protein; Pirin domain-containing protein 304118..304813 Escherichia coli DH1 12703835 YP_006090256.1 CDS EcDH1_0277 NC_017625.1 305037 306032 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_04857 hypothetical protein; LacI family transcriptional regulator 305037..306032 Escherichia coli DH1 12703836 YP_006090257.1 CDS EcDH1_0278 NC_017625.1 306210 306698 D KEGG: sdy:SDY_3588 gluconate kinase 1; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase 306210..306698 Escherichia coli DH1 12703837 YP_006090258.1 CDS EcDH1_0279 NC_017625.1 306702 308042 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sdy:SDY_3587 gluconate transporter, low affinity GNT 1 system; gluconate transporter 306702..308042 Escherichia coli DH1 12703838 YP_006090259.1 CDS EcDH1_0280 NC_017625.1 308099 308692 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: sdy:SDY_3580 putative eubacterial dITP- and XTP- hydrolyzing enzyme; multiple antibiotic resistance (MarC)-like protein complement(308099..308692) Escherichia coli DH1 12703839 YP_006090260.1 CDS EcDH1_0281 NC_017625.1 308885 309988 D KEGG: sbo:SBO_3431 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 308885..309988 Escherichia coli DH1 12703840 YP_006090261.1 CDS EcDH1_0282 NC_017625.1 310261 312447 D KEGG: ssn:SSON_3672 glycogen branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; 1,4-alpha-glucan-branching protein 310261..312447 Escherichia coli DH1 12703841 YP_006090262.1 CDS EcDH1_0283 NC_017625.1 312444 314417 D KEGG: sbc:SbBS512_E3893 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; glycogen debranching protein GlgX 312444..314417 Escherichia coli DH1 12703842 YP_006090263.1 CDS EcDH1_0284 NC_017625.1 314435 315730 D TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sdy:SDY_3576 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 314435..315730 Escherichia coli DH1 12703843 YP_006090264.1 CDS EcDH1_0285 NC_017625.1 315730 317163 D TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase group 1; Starch synthase catalytic domain protein; KEGG: ssn:SSON_3669 glycogen synthase; glycogen/starch synthase 315730..317163 Escherichia coli DH1 12703844 YP_006090265.1 CDS EcDH1_0286 NC_017625.1 317182 319629 D KEGG: sdy:SDY_3574 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 317182..319629 Escherichia coli DH1 12703845 YP_006090266.1 CDS EcDH1_0287 NC_017625.1 319758 320039 D KEGG: sfv:SFV_3434 hypothetical protein; hypothetical protein 319758..320039 Escherichia coli DH1 12703846 YP_006090267.1 CDS EcDH1_0288 NC_017625.1 320245 321750 R PFAM: FAD dependent oxidoreductase; KEGG: sfl:SF3448 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase complement(320245..321750) Escherichia coli DH1 12703847 YP_006090268.1 CDS EcDH1_0289 NC_017625.1 321940 322266 D PFAM: Rhodanese domain protein; KEGG: ssn:SSON_3662 thiosulfate sulfurtransferase; Rhodanese domain-containing protein 321940..322266 Escherichia coli DH1 12703848 YP_006090269.1 CDS EcDH1_0290 NC_017625.1 322311 323141 D PFAM: Rhomboid family protein; KEGG: sdy:SDY_3651 predicted intramembrane serine protease; rhomboid family protein 322311..323141 Escherichia coli DH1 12703849 YP_006090270.1 CDS EcDH1_0291 NC_017625.1 323158 323916 D PFAM: regulatory protein DeoR; KEGG: sdy:SDY_3652 DNA-binding transcriptional repressor; DeoR family transcriptional regulator 323158..323916 Escherichia coli DH1 12703850 YP_006090271.1 CDS EcDH1_0292 NC_017625.1 323898 325496 R PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfv:SFV_3429 putative 2-component regulator; sigma-54 interacting domain-containing protein complement(323898..325496) Escherichia coli DH1 12703851 YP_006090272.1 CDS EcDH1_0293 NC_017625.1 325685 326911 D PFAM: protein of unknown function UPF0027; KEGG: sbc:SbBS512_E3801 RtcB protein; hypothetical protein 325685..326911 Escherichia coli DH1 12703852 YP_006090273.1 CDS EcDH1_0294 NC_017625.1 326915 327931 D KEGG: sbc:SbBS512_E3800 RNA 3'-terminal phosphate cyclase; TIGRFAM: RNA 3'-phosphate cyclase; PFAM: RNA 3'-terminal phosphate cyclase; RNA 3'-terminal phosphate cyclase insert region; RNA 3'-phosphate cyclase 326915..327931 Escherichia coli DH1 12703853 YP_006090274.1 CDS EcDH1_0295 NC_017625.1 327974 330679 R PFAM: regulatory protein LuxR; KEGG: sbo:SBO_3407 transcriptional regulator MalT; LuxR family ATP-dependent transcriptional regulator complement(327974..330679) Escherichia coli DH1 12703854 YP_006090275.1 CDS EcDH1_0296 NC_017625.1 331291 333684 D KEGG: ssn:SSON_3549 maltodextrin phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35; glycogen/starch/alpha-glucan phosphorylase 331291..333684 Escherichia coli DH1 12703855 YP_006090276.1 CDS EcDH1_0297 NC_017625.1 333694 335778 D KEGG: sfx:S4326 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; 4-alpha-glucanotransferase 333694..335778 Escherichia coli DH1 12703856 YP_006090277.1 CDS EcDH1_0298 NC_017625.1 335889 337205 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sbc:SbBS512_E3796 high-affinity gluconate transporter; gluconate transporter complement(335889..337205) Escherichia coli DH1 12703857 YP_006090278.1 CDS EcDH1_0299 NC_017625.1 337565 338140 R TIGRFAM: IscR-regulated protein YhgI; PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: sdy:SDY_3662 predicted gluconate transport-associated protein; IscR-regulated protein YhgI complement(337565..338140) Escherichia coli DH1 12703858 YP_006090279.1 CDS EcDH1_0300 NC_017625.1 338199 338882 R TIGRFAM: comF family protein; KEGG: sfv:SFV_3421 gluconate periplasmic binding protein; comF family protein complement(338199..338882) Escherichia coli DH1 12703859 YP_006090280.1 CDS EcDH1_0301 NC_017625.1 338920 339690 D TIGRFAM: bioH protein; PFAM: alpha/beta hydrolase fold; KEGG: sfx:S4329 carboxylesterase BioH; bioH protein 338920..339690 Escherichia coli DH1 12703860 YP_006090281.1 CDS EcDH1_0302 NC_017625.1 339719 340597 R PFAM: putative transposase YhgA family protein; KEGG: sbc:SbBS512_E3792 putative transposase, YhgA; putative transposase YhgA family protein complement(339719..340597) Escherichia coli DH1 12703861 YP_006090282.1 CDS EcDH1_0303 NC_017625.1 340800 341036 R PFAM: Protein of unknown function DUF1920; KEGG: sdy:SDY_3666 hypothetical protein; hypothetical protein complement(340800..341036) Escherichia coli DH1 12703862 YP_006090283.1 CDS EcDH1_0304 NC_017625.1 341036 343357 R TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: sbc:SbBS512_E3790 ferrous iron transport protein B; ferrous iron transport protein B complement(341036..343357) Escherichia coli DH1 12703863 YP_006090284.1 CDS EcDH1_0305 NC_017625.1 343374 343601 R PFAM: FeoA family protein; KEGG: sdy:SDY_3668 ferrous iron transport protein A; FeoA family protein complement(343374..343601) Escherichia coli DH1 12703864 YP_006090285.1 CDS EcDH1_0306 NC_017625.1 344058 346379 R PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sbc:SbBS512_E3786 putative transcriptional accessory protein; RNA binding S1 domain-containing protein complement(344058..346379) Escherichia coli DH1 12703865 YP_006090286.1 CDS EcDH1_0307 NC_017625.1 346476 346952 R TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sdy:SDY_3670 transcription elongation factor GreB; transcription elongation factor GreB complement(346476..346952) Escherichia coli DH1 12703866 YP_006090287.1 CDS EcDH1_0308 NC_017625.1 347180 347899 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cko:CKO_04827 osmolarity response regulator; winged helix family two component transcriptional regulator 347180..347899 Escherichia coli DH1 12703867 YP_006090288.1 CDS EcDH1_0309 NC_017625.1 347896 349248 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_3672 osmolarity sensor protein; histidine kinase 347896..349248 Escherichia coli DH1 12703868 YP_006090289.1 CDS EcDH1_0310 NC_017625.1 349324 350946 R PFAM: phosphoenolpyruvate carboxykinase (ATP); KEGG: sbc:SbBS512_E3782 phosphoenolpyruvate carboxykinase (ATP); phosphoenolpyruvate carboxykinase complement(349324..350946) Escherichia coli DH1 12703869 YP_006090290.1 CDS EcDH1_0311 NC_017625.1 351325 353049 D KEGG: sbc:SbBS512_E3780 hypothetical protein; hypothetical protein 351325..353049 Escherichia coli DH1 12703870 YP_006090291.1 CDS EcDH1_0312 NC_017625.1 353112 353990 R PFAM: Hsp33 protein; KEGG: sdy:SDY_3677 HSP33-like chaperonin; Hsp33 protein complement(353112..353990) Escherichia coli DH1 12703871 YP_006090292.1 CDS EcDH1_0313 NC_017625.1 354015 354416 R PFAM: RNA-binding S4 domain protein; KEGG: sdy:SDY_3678 ribosome-associated heat shock protein HSP15; RNA-binding S4 domain-containing protein complement(354015..354416) Escherichia coli DH1 12703872 YP_006090293.1 CDS EcDH1_0314 NC_017625.1 354427 355095 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdy:SDY_3679 putative phosphatase; HAD-superfamily hydrolase complement(354427..355095) Escherichia coli DH1 12703873 YP_006090294.1 CDS EcDH1_0315 NC_017625.1 355160 357295 R PFAM: Intracellular growth attenuator IgaA; KEGG: sfv:SFV_3403 putative dehydrogenase; intracellular growth attenuator igaA complement(355160..357295) Escherichia coli DH1 12703874 YP_006090295.1 CDS EcDH1_0316 NC_017625.1 357615 358175 D PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E3774 ADP compounds hydrolase NudE; NUDIX hydrolase 357615..358175 Escherichia coli DH1 12703875 YP_006090296.1 CDS EcDH1_0317 NC_017625.1 358341 360893 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: sbo:SBO_3383 peptidoglycan synthetase; penicillin-binding protein complement(358341..360893) Escherichia coli DH1 12703876 YP_006090297.1 CDS EcDH1_0318 NC_017625.1 361013 361792 D KEGG: ssn:SSON_3526 hypothetical protein; hypothetical protein 361013..361792 Escherichia coli DH1 12703877 YP_006090298.1 CDS EcDH1_0319 NC_017625.1 361792 362331 D PFAM: Fimbrial assembly family protein; KEGG: sbc:SbBS512_E3771 PilN family protein; fimbrial assembly family protein 361792..362331 Escherichia coli DH1 12703878 YP_006090299.1 CDS EcDH1_0320 NC_017625.1 362315 362755 D KEGG: sfv:SFV_3398 hypothetical protein; hypothetical protein 362315..362755 Escherichia coli DH1 12703879 YP_006090300.1 CDS EcDH1_0321 NC_017625.1 362745 363149 D KEGG: sdy:SDY_3687 hypothetical protein; hypothetical protein 362745..363149 Escherichia coli DH1 12703880 YP_006090301.1 CDS EcDH1_0322 NC_017625.1 363061 364299 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: ssn:SSON_3522 predicted fimbrial transporter; type IV pilus secretin PilQ 363061..364299 Escherichia coli DH1 12703881 YP_006090302.1 CDS EcDH1_0323 NC_017625.1 364544 365221 D PFAM: shikimate kinase; KEGG: sfv:SFV_3395 shikimate kinase I; shikimate kinase 364544..365221 Escherichia coli DH1 12703882 YP_006090303.1 CDS EcDH1_0324 NC_017625.1 365278 366366 D PFAM: 3-dehydroquinate synthase; KEGG: sbo:SBO_3376 3-dehydroquinate synthase; 3-dehydroquinate synthase 365278..366366 Escherichia coli DH1 12703883 YP_006090304.1 CDS EcDH1_0325 NC_017625.1 366458 367744 D PFAM: Sporulation domain protein; KEGG: sfv:SFV_3393 hypothetical protein; Sporulation domain-containing protein 366458..367744 Escherichia coli DH1 12703884 YP_006090305.1 CDS EcDH1_0326 NC_017625.1 367851 368687 D KEGG: sbc:SbBS512_E3764 DNA adenine methylase; TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; DNA adenine methylase 367851..368687 Escherichia coli DH1 12703885 YP_006090306.1 CDS EcDH1_0327 NC_017625.1 368705 369382 D PFAM: ribulose-phosphate 3-epimerase; KEGG: sbc:SbBS512_E3763 ribulose-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 368705..369382 Escherichia coli DH1 12703886 YP_006090307.1 CDS EcDH1_0328 NC_017625.1 369375 370133 D TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_3516 phosphoglycolate phosphatase; phosphoglycolate phosphatase 369375..370133 Escherichia coli DH1 12703887 YP_006090308.1 CDS EcDH1_0329 NC_017625.1 370126 371130 D KEGG: sdy:SDY_3695 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 370126..371130 Escherichia coli DH1 12703888 YP_006090309.1 CDS EcDH1_0330 NC_017625.1 371420 372325 D KEGG: sbc:SbBS512_E3760 hypothetical protein; hypothetical protein 371420..372325 Escherichia coli DH1 12703889 YP_006090310.1 CDS EcDH1_0331 NC_017625.1 372342 372704 D KEGG: sbc:SbBS512_E3759 hypothetical protein; hypothetical protein 372342..372704 Escherichia coli DH1 12703890 YP_006090311.1 CDS EcDH1_0332 NC_017625.1 372788 373951 D PFAM: alanine racemase domain protein; KEGG: sbc:SbBS512_E3758 alanine racemase family; alanine racemase 372788..373951 Escherichia coli DH1 12703891 YP_006090312.1 CDS EcDH1_0333 NC_017625.1 373951 375177 D PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; KEGG: sbc:SbBS512_E3757 metalloenzyme domain protein; Phosphopentomutase 373951..375177 Escherichia coli DH1 12703892 YP_006090313.1 CDS EcDH1_0334 NC_017625.1 375174 376052 D PFAM: aryldialkylphosphatase; KEGG: sfv:SFV_3384 putative hydrolase; aryldialkylphosphatase 375174..376052 Escherichia coli DH1 12703893 YP_006090314.1 CDS EcDH1_0335 NC_017625.1 376063 376416 D KEGG: sfv:SFV_3383 hypothetical protein; hypothetical protein 376063..376416 Escherichia coli DH1 12703894 YP_006090315.1 CDS EcDH1_0336 NC_017625.1 376428 377732 D KEGG: sfx:S4367 putative transport system permease protein; putative transport system permease 376428..377732 Escherichia coli DH1 12703895 YP_006090316.1 CDS EcDH1_0337 NC_017625.1 377744 378829 D KEGG: sbc:SbBS512_E3753 hypothetical protein; putative GntR family transcriptional regulator 377744..378829 Escherichia coli DH1 12703896 YP_006090317.1 CDS EcDH1_0338 NC_017625.1 378981 379712 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sbc:SbBS512_E3752 GntR-family transcriptional regulator FrlR; GntR family transcriptional regulator complement(378981..379712) Escherichia coli DH1 12703897 YP_006090318.1 CDS EcDH1_0339 NC_017625.1 379812 380597 R PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E3751 kinase, PfkB family; PfkB domain-containing protein complement(379812..380597) Escherichia coli DH1 12703898 YP_006090319.1 CDS EcDH1_0340 NC_017625.1 380594 381424 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfv:SFV_3378 fructoselysine 3-epimerase; xylose isomerase domain-containing protein complement(380594..381424) Escherichia coli DH1 12703899 YP_006090320.1 CDS EcDH1_0341 NC_017625.1 381474 382496 R PFAM: sugar isomerase (SIS); KEGG: sfv:SFV_3377 fructoselysine-6-P-deglycase; sugar isomerase (SIS) complement(381474..382496) Escherichia coli DH1 12703900 YP_006090321.1 CDS EcDH1_0342 NC_017625.1 382517 383854 R PFAM: amino acid permease-associated region; KEGG: ssn:SSON_3502 predicted fructoselysine transporter; amino acid permease complement(382517..383854) Escherichia coli DH1 12703901 YP_006090322.1 CDS EcDH1_0343 NC_017625.1 384149 384316 R KEGG: sbc:SbBS512_E3747 putative lipoprotein; putative lipoprotein complement(384149..384316) Escherichia coli DH1 12703902 YP_006090323.1 CDS EcDH1_0344 NC_017625.1 384563 385936 R TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Siroheme synthase domain protein; KEGG: ssn:SSON_3499 siroheme synthase; uroporphyrin-III C-methyltransferase complement(384563..385936) Escherichia coli DH1 12703903 YP_006090324.1 CDS EcDH1_0345 NC_017625.1 385955 386761 R PFAM: formate/nitrite transporter; KEGG: sfv:SFV_3373 nitrite transporter NirC; formate/nitrite transporter complement(385955..386761) Escherichia coli DH1 12703904 YP_006090325.1 CDS EcDH1_0346 NC_017625.1 386887 387213 R TIGRFAM: nitrite reductase [NAD(P)H], small subunit; KEGG: sdy:SDY_3528 nitrite reductase small subunit; nitrite reductase (NAD(P)H) small subunit complement(386887..387213) Escherichia coli DH1 12703905 YP_006090326.1 CDS EcDH1_0347 NC_017625.1 387210 389753 R TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sbc:SbBS512_E3741 nitrite reductase [NAD(P)H], large subunit; nitrite reductase (NAD(P)H) large subunit complement(387210..389753) Escherichia coli DH1 12703906 YP_006090327.1 CDS EcDH1_0348 NC_017625.1 390015 391196 R PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_3346 hypothetical protein; major facilitator superfamily protein complement(390015..391196) Escherichia coli DH1 12703907 YP_006090328.1 CDS EcDH1_0349 NC_017625.1 391467 392039 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sbc:SbBS512_E3738 peptidyl-prolyl cis-trans isomerase A; Peptidylprolyl isomerase 391467..392039 Escherichia coli DH1 12703908 YP_006090329.1 CDS EcDH1_0350 NC_017625.1 392144 392311 D KEGG: sdy:SDY_3524 hypothetical protein; hypothetical protein 392144..392311 Escherichia coli DH1 12703909 YP_006090330.1 CDS EcDH1_0351 NC_017625.1 392301 392903 D PFAM: filamentation induced by cAMP protein Fic; KEGG: sfv:SFV_3367 cell filamentation protein Fic; filamentation induced by cAMP protein fic 392301..392903 Escherichia coli DH1 12703910 YP_006090331.1 CDS EcDH1_0352 NC_017625.1 392935 393498 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sdy:SDY_3522 para-aminobenzoate synthase component II; glutamine amidotransferase of anthranilate synthase 392935..393498 Escherichia coli DH1 12703911 YP_006090332.1 CDS EcDH1_0353 NC_017625.1 393584 394804 D TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: ssn:SSON_3490 bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; succinylornithine transaminase family 393584..394804 Escherichia coli DH1 12703912 YP_006090333.1 CDS EcDH1_0354 NC_017625.1 394871 396961 R TIGRFAM: integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: sbc:SbBS512_E3734 integral membrane protein, YccS/YhfK family; YccS/YhfK family integral membrane protein complement(394871..396961) Escherichia coli DH1 12703913 YP_006090334.1 CDS EcDH1_0355 NC_017625.1 397012 397644 R PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sdy:SDY_3519 cAMP-regulatory protein; CarD family transcriptional regulator complement(397012..397644) Escherichia coli DH1 12703914 YP_006090335.1 CDS EcDH1_0356 NC_017625.1 397946 398350 D PFAM: OsmC family protein; KEGG: sdy:SDY_3518 hypothetical protein; OsmC family protein 397946..398350 Escherichia coli DH1 12703915 YP_006090336.1 CDS EcDH1_0357 NC_017625.1 398405 399274 R PFAM: phosphoribulokinase/uridine kinase; KEGG: sbo:SBO_3335 probable phosphoribulokinase; Phosphoribulokinase complement(398405..399274) Escherichia coli DH1 12703916 YP_006090337.1 CDS EcDH1_0358 NC_017625.1 399328 399546 R PFAM: protein of unknown function UPF0270; KEGG: sbc:SbBS512_E3729 hypothetical protein; hypothetical protein complement(399328..399546) Escherichia coli DH1 12703917 YP_006090338.1 CDS EcDH1_0359 NC_017625.1 399540 400562 R PFAM: alpha/beta hydrolase fold; KEGG: ssn:SSON_3484 predicted hydrolase; alpha/beta hydrolase fold protein complement(399540..400562) Escherichia coli DH1 12703918 YP_006090339.1 CDS EcDH1_0360 NC_017625.1 400562 402475 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_3483 putative ABC transporter ATP-binding protein; ABC transporter complement(400562..402475) Escherichia coli DH1 12703919 YP_006090340.1 CDS EcDH1_0361 NC_017625.1 402606 403157 D PFAM: NAD(P)H dehydrogenase (quinone); KEGG: ssn:SSON_3482 glutathione-regulated potassium-efflux system ancillary protein KefG; NAD(P)H dehydrogenase (quinone) 402606..403157 Escherichia coli DH1 12703920 YP_006090341.1 CDS EcDH1_0362 NC_017625.1 403157 404962 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: ssn:SSON_3481 glutathione-regulated potassium-efflux system protein KefB; potassium efflux system protein 403157..404962 Escherichia coli DH1 12703921 YP_006090342.1 CDS EcDH1_0363 NC_017625.1 404972 405172 D PFAM: conserved hypothetical protein; KEGG: sdy:SDY_3511 hypothetical protein; hypothetical protein 404972..405172 Escherichia coli DH1 12703922 YP_006090343.1 CDS EcDH1_0364 NC_017625.1 405267 405857 D PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sbc:SbBS512_E3723 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD; FKBP-type peptidylprolyl isomerase 405267..405857 Escherichia coli DH1 12703923 YP_006090344.1 CDS EcDH1_0365 NC_017625.1 405906 406124 R PFAM: SlyX family protein; KEGG: sdy:SDY_3509 hypothetical protein; SlyX family protein complement(405906..406124) Escherichia coli DH1 12703924 YP_006090345.1 CDS EcDH1_0366 NC_017625.1 406345 407157 D PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: sbo:SBO_3327 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase); FKBP-type peptidyl-prolyl isomerase domain-containing protein 406345..407157 Escherichia coli DH1 12703925 YP_006090346.1 CDS EcDH1_0367 NC_017625.1 407324 408046 D PFAM: YheO domain protein; KEGG: sbc:SbBS512_E3720 hypothetical protein; YheO domain-containing protein 407324..408046 Escherichia coli DH1 12703926 YP_006090347.1 CDS EcDH1_0368 NC_017625.1 408046 408432 D TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein; KEGG: sdy:SDY_3506 hypothetical protein; sulfur relay protein TusD/DsrE 408046..408432 Escherichia coli DH1 12703927 YP_006090348.1 CDS EcDH1_0369 NC_017625.1 408432 408791 D TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein; KEGG: ssn:SSON_3474 hypothetical protein; sulfur relay protein TusC/DsrF 408432..408791 Escherichia coli DH1 12703928 YP_006090349.1 CDS EcDH1_0370 NC_017625.1 408799 409086 D TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein; KEGG: sbc:SbBS512_E3717 sulfur relay protein TusD/DsrH; sulfur relay protein TusB/DsrH 408799..409086 Escherichia coli DH1 12703929 YP_006090350.1 CDS EcDH1_0371 NC_017625.1 409212 409586 D TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: ent:Ent638_3759 30S ribosomal protein S12; 30S ribosomal protein S12 409212..409586 Escherichia coli DH1 12703930 YP_006090351.1 CDS EcDH1_0372 NC_017625.1 409683 410222 D PFAM: ribosomal protein S7; KEGG: sfv:SFV_3346 30S ribosomal protein S7; 30S ribosomal protein S7 409683..410222 Escherichia coli DH1 12703931 YP_006090352.1 CDS EcDH1_0373 NC_017625.1 410250 412364 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: sdy:SDY_3501 elongation factor G; translation elongation factor G 410250..412364 Escherichia coli DH1 12703932 YP_006090353.1 CDS EcDH1_0374 NC_017625.1 412435 413619 D TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: ses:SARI_04181 elongation factor Tu; translation elongation factor Tu 412435..413619 Escherichia coli DH1 12703933 YP_006090354.1 CDS EcDH1_0375 NC_017625.1 413911 416604 D PFAM: Carbohydrate-binding family V/XII; KEGG: cbh:CLC_1134 putative glycosyl hydrolase; lysozyme 413911..416604 Escherichia coli DH1 12703934 YP_006090355.1 CDS EcDH1_0376 NC_017625.1 416773 416967 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cko:CKO_04744 bacterioferritin-associated ferredoxin; BFD (2Fe-2S)-binding domain-containing protein 416773..416967 Escherichia coli DH1 12703935 YP_006090356.1 CDS EcDH1_0377 NC_017625.1 417039 417515 D TIGRFAM: bacterioferritin; PFAM: Ferritin Dps family protein; KEGG: ent:Ent638_3754 bacterioferritin, iron storage and detoxification protein; bacterioferritin 417039..417515 Escherichia coli DH1 12703936 YP_006090357.1 CDS EcDH1_0378 NC_017625.1 417544 418221 R PFAM: peptidase A24A prepilin type IV; KEGG: kpn:KPN_00149 pullulanase Q protein; peptidase A24A prepilin type IV complement(417544..418221) Escherichia coli DH1 12703937 YP_006090358.1 CDS EcDH1_0379 NC_017625.1 418221 418682 R PFAM: General secretion pathway M protein; KEGG: yen:YE3573 putative general secretion pathway protein M; general secretion pathway protein M complement(418221..418682) Escherichia coli DH1 12703938 YP_006090359.1 CDS EcDH1_0380 NC_017625.1 418679 419842 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: cko:CKO_02220 hypothetical protein; general secretion pathway protein L complement(418679..419842) Escherichia coli DH1 12703939 YP_006090360.1 CDS EcDH1_0381 NC_017625.1 419857 420840 R PFAM: General secretion pathway protein K; KEGG: eca:ECA3102 general secretion pathway protein K; General secretion pathway protein K complement(419857..420840) Escherichia coli DH1 12703940 YP_006090361.1 CDS EcDH1_0382 NC_017625.1 420833 421420 R TIGRFAM: general secretion pathway protein J; KEGG: vpa:VP0139 general secretion pathway protein J; general secretion pathway protein J complement(420833..421420) Escherichia coli DH1 12703941 YP_006090362.1 CDS EcDH1_0383 NC_017625.1 421413 421790 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: pap:PSPA7_2034 general secretion pathway protein I; general secretion pathway protein I complement(421413..421790) Escherichia coli DH1 12703942 YP_006090363.1 CDS EcDH1_0384 NC_017625.1 421787 422296 R TIGRFAM: general secretion pathway protein H; KEGG: kpe:KPK_4580 pullulanase secretion protein PulH; general secretion pathway protein H complement(421787..422296) Escherichia coli DH1 12703943 YP_006090364.1 CDS EcDH1_0385 NC_017625.1 422304 422741 R TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: cko:CKO_02225 hypothetical protein; general secretion pathway protein G complement(422304..422741) Escherichia coli DH1 12703944 YP_006090365.1 CDS EcDH1_0386 NC_017625.1 422751 423947 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: cko:CKO_02226 hypothetical protein; general secretion pathway protein F complement(422751..423947) Escherichia coli DH1 12703945 YP_006090366.1 CDS EcDH1_0387 NC_017625.1 423944 425425 R KEGG: cko:CKO_02227 hypothetical protein; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(423944..425425) Escherichia coli DH1 12703946 YP_006090367.1 CDS EcDH1_0388 NC_017625.1 425435 427387 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: cko:CKO_02228 hypothetical protein; general secretion pathway protein D complement(425435..427387) Escherichia coli DH1 12703947 YP_006090368.1 CDS EcDH1_0389 NC_017625.1 427371 428186 R TIGRFAM: general secretion pathway protein C; KEGG: kpe:KPK_4575 pullulanase secretion envelope protein PulC; general secretion pathway protein C complement(427371..428186) Escherichia coli DH1 12703948 YP_006090369.1 CDS EcDH1_0390 NC_017625.1 428366 429835 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cko:CKO_02233 hypothetical protein; peptidoglycan-binding domain 1 protein 428366..429835 Escherichia coli DH1 12703949 YP_006090370.1 CDS EcDH1_0391 NC_017625.1 429837 430256 D KEGG: ssn:SSON_3463 chromosome replication protein PioO; chromosome replication protein PioO 429837..430256 Escherichia coli DH1 12703950 YP_006090371.1 CDS EcDH1_0392 NC_017625.1 430494 430805 D PFAM: ribosomal protein S10; KEGG: sdy:SDY_3497 30S ribosomal protein S10; 30S ribosomal protein S10 430494..430805 Escherichia coli DH1 12703951 YP_006090372.1 CDS EcDH1_0393 NC_017625.1 430838 431467 D PFAM: ribosomal protein L3; KEGG: sdy:SDY_3496 50S ribosomal protein L3; 50S ribosomal protein L3 430838..431467 Escherichia coli DH1 12703952 YP_006090373.1 CDS EcDH1_0394 NC_017625.1 431478 432083 D PFAM: ribosomal protein L4/L1e; KEGG: esa:ESA_00004 50S ribosomal protein L4; 50S ribosomal protein L4 431478..432083 Escherichia coli DH1 12703953 YP_006090374.1 CDS EcDH1_0395 NC_017625.1 432080 432382 D PFAM: Ribosomal protein L25/L23; KEGG: sbc:SbBS512_E3703 ribosomal protein L23; 50S ribosomal protein L25 432080..432382 Escherichia coli DH1 12703954 YP_006090375.1 CDS EcDH1_0396 NC_017625.1 432400 433221 D PFAM: ribosomal protein L2; KEGG: sbc:SbBS512_E3702 ribosomal protein L2; 50S ribosomal protein L2 432400..433221 Escherichia coli DH1 12703955 YP_006090376.1 CDS EcDH1_0397 NC_017625.1 433238 433516 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: sdy:SDY_3492 30S ribosomal protein S19; 30S ribosomal protein S19 433238..433516 Escherichia coli DH1 12703956 YP_006090377.1 CDS EcDH1_0398 NC_017625.1 433531 433863 D TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: esa:ESA_00010 50S ribosomal protein L22; 50S ribosomal protein L22 433531..433863 Escherichia coli DH1 12703957 YP_006090378.1 CDS EcDH1_0399 NC_017625.1 433881 434582 D KEGG: ent:Ent638_3745 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 433881..434582 Escherichia coli DH1 12703958 YP_006090379.1 CDS EcDH1_0400 NC_017625.1 434595 435005 D PFAM: ribosomal protein L16; KEGG: sdy:SDY_3489 50S ribosomal protein L16; 50S ribosomal protein L16 434595..435005 Escherichia coli DH1 12703959 YP_006090380.1 CDS EcDH1_0401 NC_017625.1 435005 435196 D PFAM: ribosomal protein L29; KEGG: sbc:SbBS512_E3697 ribosomal protein L29; 50S ribosomal protein L29 435005..435196 Escherichia coli DH1 12703960 YP_006090381.1 CDS EcDH1_0402 NC_017625.1 435196 435450 D PFAM: ribosomal protein S17; KEGG: esa:ESA_00014 30S ribosomal protein S17; 30S ribosomal protein S17 435196..435450 Escherichia coli DH1 12703961 YP_006090382.1 CDS EcDH1_0403 NC_017625.1 435615 435986 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: sdy:SDY_3486 50S ribosomal protein L14; 50S ribosomal protein L14 435615..435986 Escherichia coli DH1 12703962 YP_006090383.1 CDS EcDH1_0404 NC_017625.1 435997 436311 D TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; KEGG: kpn:KPN_03708 50S ribosomal protein L24; 50S ribosomal protein L24 435997..436311 Escherichia coli DH1 12703963 YP_006090384.1 CDS EcDH1_0405 NC_017625.1 436326 436865 D PFAM: ribosomal protein L5; KEGG: kpn:KPN_03707 50S ribosomal protein L5; 50S ribosomal protein L5 436326..436865 Escherichia coli DH1 12703964 YP_006090385.1 CDS EcDH1_0406 NC_017625.1 436880 437185 D PFAM: ribosomal protein S14; KEGG: sdy:SDY_3483 30S ribosomal protein S14; 30S ribosomal protein S14 436880..437185 Escherichia coli DH1 12703965 YP_006090386.1 CDS EcDH1_0407 NC_017625.1 437219 437611 D PFAM: ribosomal protein S8; KEGG: cko:CKO_04720 30S ribosomal protein S8; 30S ribosomal protein S8 437219..437611 Escherichia coli DH1 12703966 YP_006090387.1 CDS EcDH1_0408 NC_017625.1 437624 438157 D TIGRFAM: ribosomal protein L6 signature 1; PFAM: ribosomal protein L6; KEGG: sdy:SDY_3481 50S ribosomal protein L6; ribosomal protein L6 signature 1 437624..438157 Escherichia coli DH1 12703967 YP_006090388.1 CDS EcDH1_0409 NC_017625.1 438167 438520 D TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: cko:CKO_04717 50S ribosomal protein L18; 50S ribosomal protein L18 438167..438520 Escherichia coli DH1 12703968 YP_006090389.1 CDS EcDH1_0410 NC_017625.1 438535 439038 D TIGRFAM: ribosomal protein S5; PFAM: ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG: cko:CKO_04716 30S ribosomal protein S5; 30S ribosomal protein S5 438535..439038 Escherichia coli DH1 12703969 YP_006090390.1 CDS EcDH1_0411 NC_017625.1 439042 439221 D PFAM: ribosomal protein L30; KEGG: sdy:SDY_3478 50S ribosomal protein L30; 50S ribosomal protein L30 439042..439221 Escherichia coli DH1 12703970 YP_006090391.1 CDS EcDH1_0412 NC_017625.1 439225 439659 D PFAM: ribosomal protein L15; KEGG: sdy:SDY_3477 50S ribosomal protein L15; 50S ribosomal protein L15 439225..439659 Escherichia coli DH1 12703971 YP_006090392.1 CDS EcDH1_0413 NC_017625.1 439667 440998 D TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: sbc:SbBS512_E3685 preprotein translocase, SecY subunit; preprotein translocase subunit SecY 439667..440998 Escherichia coli DH1 12703972 YP_006090393.1 CDS EcDH1_0414 NC_017625.1 441030 441146 D PFAM: ribosomal protein L36; KEGG: esa:ESA_00028 50S ribosomal protein L36; 50S ribosomal protein L36 441030..441146 Escherichia coli DH1 12703973 YP_006090394.1 CDS EcDH1_0415 NC_017625.1 441293 441649 D TIGRFAM: short-chain dehydrogenase/reductase SDR; PFAM: ribosomal protein S13; KEGG: sdy:SDY_3474 30S ribosomal protein S13; short-chain dehydrogenase/reductase SDR 441293..441649 Escherichia coli DH1 12703974 YP_006090395.1 CDS EcDH1_0416 NC_017625.1 441666 442055 D PFAM: ribosomal protein S11; KEGG: sdy:SDY_3473 30S ribosomal protein S11; 30S ribosomal protein S11 441666..442055 Escherichia coli DH1 12703975 YP_006090396.1 CDS EcDH1_0417 NC_017625.1 442089 442709 D PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: sdy:SDY_3472 30S ribosomal protein S4; 30S ribosomal protein S4 442089..442709 Escherichia coli DH1 12703976 YP_006090397.1 CDS EcDH1_0418 NC_017625.1 442735 443724 D KEGG: sbc:SbBS512_E3681 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; RNA polymerase insert; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 442735..443724 Escherichia coli DH1 12703977 YP_006090398.1 CDS EcDH1_0419 NC_017625.1 443765 444148 D PFAM: ribosomal protein L17; KEGG: sdy:SDY_3470 50S ribosomal protein L17; 50S ribosomal protein L17 443765..444148 Escherichia coli DH1 12703978 YP_006090399.1 CDS EcDH1_0420 NC_017625.1 444255 444623 D KEGG: ssn:SSON_3434 hypothetical protein; hypothetical protein 444255..444623 Escherichia coli DH1 12703979 YP_006090400.1 CDS EcDH1_0421 NC_017625.1 444634 445059 D TIGRFAM: Zn(II)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sdy:SDY_3468 zinc-responsive transcriptional regulator; MerR family transcriptional regulator 444634..445059 Escherichia coli DH1 12703980 YP_006090401.1 CDS EcDH1_0422 NC_017625.1 445115 445333 D PFAM: protein of unknown function DUF331; KEGG: ssn:SSON_3432 hypothetical protein; hypothetical protein 445115..445333 Escherichia coli DH1 12703981 YP_006090402.1 CDS EcDH1_0423 NC_017625.1 445330 445740 R TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: sbc:SbBS512_E3677 large conductance mechanosensitive channel protein; large conductance mechanosensitive channel protein complement(445330..445740) Escherichia coli DH1 12703982 YP_006090403.1 CDS EcDH1_0424 NC_017625.1 445870 447246 R PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: sbc:SbBS512_E3674 trk system potassium uptake protein TrkA; TrkA-N domain-containing protein complement(445870..447246) Escherichia coli DH1 12703983 YP_006090404.1 CDS EcDH1_0425 NC_017625.1 447268 448557 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: sbo:SBO_3282 16S rRNA methyltransferase B; sun protein complement(447268..448557) Escherichia coli DH1 12703984 YP_006090405.1 CDS EcDH1_0426 NC_017625.1 448603 449550 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: sdy:SDY_3464 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(448603..449550) Escherichia coli DH1 12703985 YP_006090406.1 CDS EcDH1_0427 NC_017625.1 449565 450074 R KEGG: sdy:SDY_3463 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(449565..450074) Escherichia coli DH1 12703986 YP_006090407.1 CDS EcDH1_0428 NC_017625.1 450204 451328 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: sbc:SbBS512_E3670 DNA protecting protein DprA; DNA protecting protein DprA 450204..451328 Escherichia coli DH1 12703987 YP_006090408.1 CDS EcDH1_0429 NC_017625.1 451300 451773 D PFAM: protein of unknown function DUF494; KEGG: sbo:SBO_3278 hypothetical protein; hypothetical protein 451300..451773 Escherichia coli DH1 12703988 YP_006090409.1 CDS EcDH1_0430 NC_017625.1 451802 452344 D PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: sdy:SDY_3460 putative DNA topoisomerase; DNA topoisomerase type IA zn finger domain-containing protein 451802..452344 Escherichia coli DH1 12703989 YP_006090410.1 CDS EcDH1_0431 NC_017625.1 452349 452921 D PFAM: SUA5/yciO/yrdC domain; KEGG: sbc:SbBS512_E3667 SUA5/YciO/YrdC/YwlC family protein; SUA5/yciO/yrdC domain-containing protein 452349..452921 Escherichia coli DH1 12703990 YP_006090411.1 CDS EcDH1_0432 NC_017625.1 452926 453744 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: sfx:S3537 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 452926..453744 Escherichia coli DH1 12703991 YP_006090412.1 CDS EcDH1_0433 NC_017625.1 453741 453998 D PFAM: protein of unknown function DUF1488; KEGG: sbc:SbBS512_E3664 hypothetical protein; hypothetical protein 453741..453998 Escherichia coli DH1 12703992 YP_006090413.1 CDS EcDH1_0434 NC_017625.1 453974 454528 R KEGG: ssn:SSON_3420 putative transferase; putative transferase complement(453974..454528) Escherichia coli DH1 12703993 YP_006090414.1 CDS EcDH1_0435 NC_017625.1 460570 461328 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_3265 putative ATP-binding component of a transport system; ABC transporter complement(460570..461328) Escherichia coli DH1 12704001 YP_006090415.1 CDS EcDH1_0436 NC_017625.1 461336 462439 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_3447 putative transport system permease protein; polar amino acid ABC transporter inner membrane subunit complement(461336..462439) Escherichia coli DH1 12704002 YP_006090416.1 CDS EcDH1_0437 NC_017625.1 462449 463630 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cko:CKO_04682 hypothetical protein; polar amino acid ABC transporter inner membrane subunit complement(462449..463630) Escherichia coli DH1 12704003 YP_006090417.1 CDS EcDH1_0439 NC_017625.1 465153 465374 R KEGG: sbc:SbBS512_E3650 putative lipoprotein; putative lipoprotein complement(465153..465374) Escherichia coli DH1 12704005 YP_006090418.1 CDS EcDH1_0440 NC_017625.1 465627 468731 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sbo:SBO_3260 integral transmembrane protein; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(465627..468731) Escherichia coli DH1 12704006 YP_006090419.1 CDS EcDH1_0441 NC_017625.1 468743 469900 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E3648 acriflavine resistance protein E; RND family efflux transporter MFP subunit complement(468743..469900) Escherichia coli DH1 12704007 YP_006090420.1 CDS EcDH1_0442 NC_017625.1 470299 470961 D PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: sbc:SbBS512_E3647 putative transcriptional regulator EnvR; TetR family transcriptional regulator 470299..470961 Escherichia coli DH1 12704008 YP_006090421.1 CDS EcDH1_0443 NC_017625.1 470964 471143 R KEGG: sbc:SbBS512_E3646 hypothetical protein; hypothetical protein complement(470964..471143) Escherichia coli DH1 12704009 YP_006090422.1 CDS EcDH1_0444 NC_017625.1 471227 472111 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sbc:SbBS512_E3645 DNA methylase, N4/N6-methyltransferase family; DNA methylase N-4/N-6 domain-containing protein complement(471227..472111) Escherichia coli DH1 12704010 YP_006090423.1 CDS EcDH1_0445 NC_017625.1 472197 472493 R PFAM: helix-turn-helix Fis-type; KEGG: spe:Spro_4424 DNA-binding protein fis; Fis family transcriptional regulator complement(472197..472493) Escherichia coli DH1 12704011 YP_006090424.1 CDS EcDH1_0446 NC_017625.1 472519 473484 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: sdy:SDY_3437 tRNA-dihydrouridine synthase B; nifR3 family TIM-barrel protein complement(472519..473484) Escherichia coli DH1 12704012 YP_006090425.1 CDS EcDH1_0447 NC_017625.1 473813 474694 R TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: methyltransferase small; ribosomal L11 methyltransferase; Methyltransferase type 12; KEGG: sdy:SDY_3436 ribosomal protein L11 methyltransferase; 50S ribosomal protein L11 methyltransferase complement(473813..474694) Escherichia coli DH1 12704013 YP_006090426.1 CDS EcDH1_0448 NC_017625.1 474706 476157 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/pantothenate symporter; PFAM: Na+/solute symporter; KEGG: ssn:SSON_3399 sodium/panthothenate symporter; sodium/pantothenate symporter complement(474706..476157) Escherichia coli DH1 12704014 YP_006090427.1 CDS EcDH1_0449 NC_017625.1 476147 476389 R PFAM: protein of unknown function DUF997; KEGG: sdy:SDY_3434 hypothetical protein; hypothetical protein complement(476147..476389) Escherichia coli DH1 12704015 YP_006090428.1 CDS EcDH1_0450 NC_017625.1 476498 477847 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: sdy:SDY_3433 acetyl-CoA carboxylase biotin carboxylase subunit; acetyl-CoA carboxylase, biotin carboxylase complement(476498..477847) Escherichia coli DH1 12704016 YP_006090429.1 CDS EcDH1_0451 NC_017625.1 477858 478328 R TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sbc:SbBS512_E3287 acetyl-CoA carboxylase, biotin carboxyl carrier protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(477858..478328) Escherichia coli DH1 12704017 YP_006090430.1 CDS EcDH1_0452 NC_017625.1 478470 478631 D hypothetical protein 478470..478631 Escherichia coli DH1 12704018 YP_006090431.1 CDS EcDH1_0454 NC_017625.1 479306 480280 R TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_3394 putative dehydrogenase; YhdH/YhfP family quinone oxidoreductase complement(479306..480280) Escherichia coli DH1 12704020 YP_006090432.1 CDS EcDH1_0455 NC_017625.1 480432 482372 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: ssn:SSON_3393 regulatory protein CsrD; diguanylate cyclase/phosphodiesterase 480432..482372 Escherichia coli DH1 12704021 YP_006090433.1 CDS EcDH1_0456 NC_017625.1 482677 483720 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: ent:Ent638_3687 rod shape-determining protein MreB; MreB/Mrl family cell shape determining protein 482677..483720 Escherichia coli DH1 12704022 YP_006090434.1 CDS EcDH1_0457 NC_017625.1 483786 484889 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: sdy:SDY_3425 cell wall structural complex MreBCD transmembrane component MreC; rod shape-determining protein MreC 483786..484889 Escherichia coli DH1 12704023 YP_006090435.1 CDS EcDH1_0458 NC_017625.1 484889 485377 D TIGRFAM: rod shape-determining protein MreD; PFAM: Rod shape-determining protein MreD; KEGG: sbc:SbBS512_E3280 rod shape-determining protein MreD; rod shape-determining protein MreD 484889..485377 Escherichia coli DH1 12704024 YP_006090436.1 CDS EcDH1_0459 NC_017625.1 485386 485979 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: ssn:SSON_3389 Maf-like protein; maf protein 485386..485979 Escherichia coli DH1 12704025 YP_006090437.1 CDS EcDH1_0460 NC_017625.1 485969 487438 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: sdy:SDY_3422 ribonuclease G; ribonuclease, Rne/Rng family 485969..487438 Escherichia coli DH1 12704026 YP_006090438.1 CDS EcDH1_0461 NC_017625.1 487506 491306 D KEGG: ssn:SSON_3387 hypothetical protein; hypothetical protein 487506..491306 Escherichia coli DH1 12704027 YP_006090439.1 CDS EcDH1_0462 NC_017625.1 491736 493181 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sfv:SFV_3271 protease TldD; peptidase U62 modulator of DNA gyrase 491736..493181 Escherichia coli DH1 12704028 YP_006090440.1 CDS EcDH1_0463 NC_017625.1 493315 494244 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3144 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator complement(493315..494244) Escherichia coli DH1 12704029 YP_006090441.1 CDS EcDH1_0464 NC_017625.1 494427 494630 D PFAM: protein of unknown function DUF1656; KEGG: sdy:SDY_3418 hypothetical protein; hypothetical protein 494427..494630 Escherichia coli DH1 12704030 YP_006090442.1 CDS EcDH1_0465 NC_017625.1 494638 495570 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sfv:SFV_3268 p-hydroxybenzoic acid efflux subunit AaeA; RND family efflux transporter MFP subunit 494638..495570 Escherichia coli DH1 12704031 YP_006090443.1 CDS EcDH1_0466 NC_017625.1 495576 497543 D PFAM: Fusaric acid resistance protein conserved region; KEGG: sfv:SFV_3267 p-hydroxybenzoic acid efflux subunit AaeB; fusaric acid resistance protein 495576..497543 Escherichia coli DH1 12704032 YP_006090444.1 CDS EcDH1_0467 NC_017625.1 497635 497907 D PFAM: Barstar (barnase inhibitor); KEGG: sbc:SbBS512_E3537 hypothetical protein; barnase inhibitor 497635..497907 Escherichia coli DH1 12704033 YP_006090445.1 CDS EcDH1_0468 NC_017625.1 497963 498226 R PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E3538 protein YcfR; hypothetical protein complement(497963..498226) Escherichia coli DH1 12704034 YP_006090446.1 CDS EcDH1_0469 NC_017625.1 498591 499061 R PFAM: arginine repressor; KEGG: sdy:SDY_3413 arginine repressor; arginine repressor ArgR complement(498591..499061) Escherichia coli DH1 12704035 YP_006090447.1 CDS EcDH1_0470 NC_017625.1 499496 500434 D TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: sbc:SbBS512_E3540 malate dehydrogenase, NAD-dependent; malate dehydrogenase 499496..500434 Escherichia coli DH1 12704036 YP_006090448.1 CDS EcDH1_0471 NC_017625.1 500497 501564 R TIGRFAM: periplasmic serine protease DegS; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: sdy:SDY_3411 serine endoprotease; periplasmic serine protease DegS complement(500497..501564) Escherichia coli DH1 12704037 YP_006090449.1 CDS EcDH1_0472 NC_017625.1 501654 503021 R KEGG: sbc:SbBS512_E3542 serine peptidase DegQ; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(501654..503021) Escherichia coli DH1 12704038 YP_006090450.1 CDS EcDH1_0473 NC_017625.1 503175 503573 R PFAM: protein of unknown function DUF1043; KEGG: sbc:SbBS512_E3543 hypothetical protein; hypothetical protein complement(503175..503573) Escherichia coli DH1 12704039 YP_006090451.1 CDS EcDH1_0474 NC_017625.1 503767 504894 D PFAM: AFG1-family ATPase; KEGG: ssn:SSON_3373 hypothetical protein; AFG1 family ATPase 503767..504894 Escherichia coli DH1 12704040 YP_006090452.1 CDS EcDH1_0475 NC_017625.1 505113 505541 D PFAM: ribosomal protein L13; KEGG: sfv:SFV_3258 50S ribosomal protein L13; 50S ribosomal protein L13 505113..505541 Escherichia coli DH1 12704041 YP_006090453.1 CDS EcDH1_0476 NC_017625.1 505557 505949 D PFAM: ribosomal protein S9; KEGG: kpn:KPN_03629 30S ribosomal protein S9; 30S ribosomal protein S9 505557..505949 Escherichia coli DH1 12704042 YP_006090454.1 CDS EcDH1_0477 NC_017625.1 506344 506982 D PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E3547 stringent starvation protein A; glutathione S-transferase 506344..506982 Escherichia coli DH1 12704043 YP_006090455.1 CDS EcDH1_0478 NC_017625.1 506988 507485 D PFAM: Stringent starvation protein B; KEGG: sbo:SBO_3161 ClpXP protease specificity-enhancing factor; stringent starvation protein B 506988..507485 Escherichia coli DH1 12704044 YP_006090456.1 CDS EcDH1_0479 NC_017625.1 507528 508895 R TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; KEGG: sfx:S3482 putative cryptic C4-dicarboxylate transporter DcuD; anaerobic c4-dicarboxylate antiporter complement(507528..508895) Escherichia coli DH1 12704045 YP_006090457.1 CDS EcDH1_0480 NC_017625.1 509275 510066 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbo:SBO_3163 transcriptional regulator NanR; regulatory protein GntR HTH 509275..510066 Escherichia coli DH1 12704046 YP_006090458.1 CDS EcDH1_0481 NC_017625.1 510188 511081 D TIGRFAM: N-acetylneuraminate lyase; PFAM: dihydrodipicolinate synthetase; KEGG: sdy:SDY_3400 N-acetylneuraminate lyase; N-acetylneuraminate lyase 510188..511081 Escherichia coli DH1 12704047 YP_006090459.1 CDS EcDH1_0482 NC_017625.1 511190 512680 D TIGRFAM: sialic acid transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3552 MFS transporter, sialate:H+ symporter (SHS) family; sialic acid transporter 511190..512680 Escherichia coli DH1 12704048 YP_006090460.1 CDS EcDH1_0483 NC_017625.1 512728 513417 D PFAM: putative N-acetylmannosamine-6-phosphate epimerase; KEGG: sbc:SbBS512_E3553 putative N-acetylmannosamine-6-phosphate 2-epimerase; N-acylglucosamine-6-phosphate 2-epimerase 512728..513417 Escherichia coli DH1 12704049 YP_006090461.1 CDS EcDH1_0484 NC_017625.1 513414 514289 D PFAM: ROK family protein; KEGG: sfv:SFV_3247 N-acetylmannosamine kinase; ROK family protein 513414..514289 Escherichia coli DH1 12704050 YP_006090462.1 CDS EcDH1_0485 NC_017625.1 514286 514750 D PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3555 hypothetical protein; hypothetical protein 514286..514750 Escherichia coli DH1 12704051 YP_006090463.1 CDS EcDH1_0486 NC_017625.1 514810 515937 R PFAM: protein of unknown function DUF1016; KEGG: sdy:SDY_3395 hypothetical protein; hypothetical protein complement(514810..515937) Escherichia coli DH1 12704052 YP_006090464.1 CDS EcDH1_0487 NC_017625.1 516122 516838 R PFAM: protein of unknown function DUF1120; KEGG: sea:SeAg_B4896 putative outer membrane protein; hypothetical protein complement(516122..516838) Escherichia coli DH1 12704053 YP_006090465.1 CDS EcDH1_0488 NC_017625.1 516835 517056 R hypothetical protein complement(516835..517056) Escherichia coli DH1 12704054 YP_006090466.1 CDS EcDH1_0489 NC_017625.1 517082 518062 D PFAM: transposase IS4 family protein; transposase IS4 family protein 517082..518062 Escherichia coli DH1 12704055 YP_006090467.1 CDS EcDH1_0490 NC_017625.1 518100 518579 R KEGG: sao:SAOUHSC_A00747 hypothetical protein; hypothetical protein complement(518100..518579) Escherichia coli DH1 12704056 YP_006090468.1 CDS EcDH1_0491 NC_017625.1 518576 520957 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: esa:ESA_03515 hypothetical protein; fimbrial biogenesis outer membrane usher protein complement(518576..520957) Escherichia coli DH1 12704057 YP_006090469.1 CDS EcDH1_0492 NC_017625.1 520978 521652 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: stm:STM4573 putative periplasmic chaperone protein; Pili assembly chaperone, N-terminal complement(520978..521652) Escherichia coli DH1 12704058 YP_006090470.1 CDS EcDH1_0493 NC_017625.1 521824 522588 R PFAM: protein of unknown function DUF1120; KEGG: esa:ESA_03519 hypothetical protein; hypothetical protein complement(521824..522588) Escherichia coli DH1 12704059 YP_006090471.1 CDS EcDH1_0494 NC_017625.1 523148 524566 R TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E3557 glutamate synthase (NADPH), small subunit; glutamate synthase, small subunit complement(523148..524566) Escherichia coli DH1 12704060 YP_006090472.1 CDS EcDH1_0495 NC_017625.1 524579 529132 R PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: sbo:SBO_3170 glutamate synthase subunit alpha; glutamate synthase (ferredoxin) complement(524579..529132) Escherichia coli DH1 12704061 YP_006090473.1 CDS EcDH1_0496 NC_017625.1 529714 530643 D KEGG: sbo:SBO_3171 hypothetical protein; TIGRFAM: conserved hypothetical protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hypothetical protein 529714..530643 Escherichia coli DH1 12704062 YP_006090474.1 CDS EcDH1_0497 NC_017625.1 530739 533075 D KEGG: sbo:SBO_3172 aerobic respiration control sensor protein ArcB; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor hybrid histidine kinase 530739..533075 Escherichia coli DH1 12704063 YP_006090475.1 CDS EcDH1_0498 NC_017625.1 533305 533958 D PFAM: ThiJ/PfpI domain protein; KEGG: sfv:SFV_3239 isoprenoid biosynthesis protein; ThiJ/PfpI domain-containing protein 533305..533958 Escherichia coli DH1 12704064 YP_006090476.1 CDS EcDH1_0499 NC_017625.1 533955 534683 D TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase family 51; KEGG: sdy:SDY_3389 monofunctional biosynthetic peptidoglycan transglycosylase; monofunctional biosynthetic peptidoglycan transglycosylase 533955..534683 Escherichia coli DH1 12704065 YP_006090477.1 CDS EcDH1_0500 NC_017625.1 534680 535312 R KEGG: sfx:S3465 hypothetical protein; hypothetical protein complement(534680..535312) Escherichia coli DH1 12704066 YP_006090478.1 CDS EcDH1_0501 NC_017625.1 535526 535798 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: sdy:SDY_3387 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); phosphocarrier, Hpr family complement(535526..535798) Escherichia coli DH1 12704067 YP_006090479.1 CDS EcDH1_0502 NC_017625.1 535795 536649 R PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3565 hypothetical protein; hypothetical protein complement(535795..536649) Escherichia coli DH1 12704068 YP_006090480.1 CDS EcDH1_0503 NC_017625.1 536695 537186 R TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbc:SbBS512_E3566 PTS IIA-like nitrogen-regulatory protein PtsN; PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN complement(536695..537186) Escherichia coli DH1 12704069 YP_006090481.1 CDS EcDH1_0504 NC_017625.1 537304 537591 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sdy:SDY_3384 putative sigma(54) modulation protein; sigma 54 modulation protein/ribosomal protein S30EA complement(537304..537591) Escherichia coli DH1 12704070 YP_006090482.1 CDS EcDH1_0505 NC_017625.1 537614 539047 R TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: sfx:S3460 RNA polymerase factor sigma-54; RNA polymerase sigma 54 subunit RpoN complement(537614..539047) Escherichia coli DH1 12704071 YP_006090483.1 CDS EcDH1_0506 NC_017625.1 539095 539820 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_3382 putative ABC transporter ATP-binding protein YhbG; ABC transporter complement(539095..539820) Escherichia coli DH1 12704072 YP_006090484.1 CDS EcDH1_0507 NC_017625.1 539827 540384 R TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein; KEGG: sdy:SDY_3381 hypothetical protein; lipopolysaccharide transport periplasmic protein LptA complement(539827..540384) Escherichia coli DH1 12704073 YP_006090485.1 CDS EcDH1_0508 NC_017625.1 540353 540928 R PFAM: protein of unknown function DUF1239; KEGG: sdy:SDY_3380 hypothetical protein; hypothetical protein complement(540353..540928) Escherichia coli DH1 12704074 YP_006090486.1 CDS EcDH1_0509 NC_017625.1 540925 541491 R TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: sdy:SDY_3379 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(540925..541491) Escherichia coli DH1 12704075 YP_006090487.1 CDS EcDH1_0510 NC_017625.1 541512 542498 R KEGG: sbc:SbBS512_E3573 arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(541512..542498) Escherichia coli DH1 12704076 YP_006090488.1 CDS EcDH1_0511 NC_017625.1 542512 543489 R TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: sbo:SBO_3186 putative calcium/sodium:proton antiporter; CaCA family Na+/Ca+ antiporter complement(542512..543489) Escherichia coli DH1 12704077 YP_006090489.1 CDS EcDH1_0512 NC_017625.1 543699 544508 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_3376 putative ABC transporter ATP-binding protein YrbF; ABC transporter 543699..544508 Escherichia coli DH1 12704078 YP_006090490.1 CDS EcDH1_0513 NC_017625.1 544516 545298 D PFAM: protein of unknown function DUF140; KEGG: sbc:SbBS512_E3576 toluene ABC transporter, permease protein; hypothetical protein 544516..545298 Escherichia coli DH1 12704079 YP_006090491.1 CDS EcDH1_0514 NC_017625.1 545303 545854 D PFAM: Mammalian cell entry related domain protein; KEGG: sbc:SbBS512_E3577 Mce family protein; Mammalian cell entry related domain-containing protein 545303..545854 Escherichia coli DH1 12704080 YP_006090492.1 CDS EcDH1_0515 NC_017625.1 545873 546508 D PFAM: toluene tolerance family protein; KEGG: sbc:SbBS512_E3578 toluene tolerance protein Ttg2D; toluene tolerance family protein 545873..546508 Escherichia coli DH1 12704081 YP_006090493.1 CDS EcDH1_0516 NC_017625.1 546508 546801 D KEGG: sdy:SDY_3372 hypothetical protein; hypothetical protein 546508..546801 Escherichia coli DH1 12704082 YP_006090494.1 CDS EcDH1_0517 NC_017625.1 546946 547215 D PFAM: BolA family protein; KEGG: sdy:SDY_3371 hypothetical protein; BolA family protein 546946..547215 Escherichia coli DH1 12704083 YP_006090495.1 CDS EcDH1_0518 NC_017625.1 547270 548529 D TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: ssn:SSON_3337 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 547270..548529 Escherichia coli DH1 12704084 YP_006090496.1 CDS EcDH1_0519 NC_017625.1 548577 548855 R KEGG: ssn:SSON_3336 DNA-binding transcriptional activator of maltose metabolism; transcriptional regulator Nlp complement(548577..548855) Escherichia coli DH1 12704085 YP_006090497.1 CDS EcDH1_0520 NC_017625.1 549083 550054 R PFAM: Polyprenyl synthetase; KEGG: sbo:SBO_3195 octaprenyl diphosphate synthase; polyprenyl synthetase complement(549083..550054) Escherichia coli DH1 12704086 YP_006090498.1 CDS EcDH1_0521 NC_017625.1 550313 550624 D PFAM: ribosomal protein L21; KEGG: sdy:SDY_3367 50S ribosomal protein L21; 50S ribosomal protein L21 550313..550624 Escherichia coli DH1 12704087 YP_006090499.1 CDS EcDH1_0522 NC_017625.1 550645 550902 D PFAM: ribosomal protein L27; KEGG: sdy:SDY_3366 50S ribosomal protein L27; 50S ribosomal protein L27 550645..550902 Escherichia coli DH1 12704088 YP_006090500.1 CDS EcDH1_0523 NC_017625.1 551029 551994 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbo:SBO_3198 hypothetical protein; hypothetical protein 551029..551994 Escherichia coli DH1 12704089 YP_006090501.1 CDS EcDH1_0524 NC_017625.1 552010 553182 D TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; KEGG: sbc:SbBS512_E3587 GTP-binding protein Obg/CgtA; GTP-binding protein Obg/CgtA 552010..553182 Escherichia coli DH1 12704090 YP_006090502.1 CDS EcDH1_0525 NC_017625.1 553368 554801 R KEGG: sbc:SbBS512_E3588 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(553368..554801) Escherichia coli DH1 12704091 YP_006090503.1 CDS EcDH1_0526 NC_017625.1 555049 555525 D TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: sdy:SDY_3362 transcription elongation factor GreA; transcription elongation factor GreA 555049..555525 Escherichia coli DH1 12704092 YP_006090504.1 CDS EcDH1_0527 NC_017625.1 555681 555974 R PFAM: protein of unknown function UPF0044; KEGG: sbc:SbBS512_E3590 putative RNA-binding protein; hypothetical protein complement(555681..555974) Escherichia coli DH1 12704093 YP_006090505.1 CDS EcDH1_0528 NC_017625.1 556100 556729 D TIGRFAM: ribosomal RNA large subunit methyltransferase J; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: sbc:SbBS512_E3591 ribosomal RNA large subunit methyltransferase J; ribosomal RNA large subunit methyltransferase J 556100..556729 Escherichia coli DH1 12704094 YP_006090506.1 CDS EcDH1_0529 NC_017625.1 556820 558763 D KEGG: sbc:SbBS512_E3592 ATP-dependent metallopeptidase HflB; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 556820..558763 Escherichia coli DH1 12704095 YP_006090507.1 CDS EcDH1_0530 NC_017625.1 558853 559701 D KEGG: ssn:SSON_3325 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase 558853..559701 Escherichia coli DH1 12704096 YP_006090508.1 CDS EcDH1_0531 NC_017625.1 559694 561031 D TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sbc:SbBS512_E3594 phosphoglucosamine mutase; phosphoglucosamine mutase 559694..561031 Escherichia coli DH1 12704097 YP_006090509.1 CDS EcDH1_0532 NC_017625.1 561259 561591 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: sbc:SbBS512_E3595 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 561259..561591 Escherichia coli DH1 12704098 YP_006090510.1 CDS EcDH1_0533 NC_017625.1 562133 563776 D PFAM: sulfatase; KEGG: sbo:SBO_3209 putative alkaline phosphatase I; sulfatase 562133..563776 Escherichia coli DH1 12704100 YP_006090511.1 CDS EcDH1_0534 NC_017625.1 563784 565127 R PFAM: argininosuccinate synthase; KEGG: ssn:SSON_3320 argininosuccinate synthase; argininosuccinate synthase complement(563784..565127) Escherichia coli DH1 12704101 YP_006090512.1 CDS EcDH1_0535 NC_017625.1 565788 566210 D PFAM: protein of unknown function DUF150; KEGG: sdy:SDY_3349 hypothetical protein; hypothetical protein 565788..566210 Escherichia coli DH1 12704103 YP_006090513.1 CDS EcDH1_0536 NC_017625.1 566238 567725 D TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; KEGG: ssn:SSON_3315 transcription elongation factor NusA; NusA antitermination factor 566238..567725 Escherichia coli DH1 12704104 YP_006090514.1 CDS EcDH1_0537 NC_017625.1 567750 570422 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; GTP-binding protein HSR1-related; elongation factor Tu domain 2 protein; translation initiation factor IF-2 domain protein; Initiation factor 2 associated domain protein; KEGG: sbc:SbBS512_E3603 translation initiation factor IF-2; translation initiation factor IF-2 567750..570422 Escherichia coli DH1 12704105 YP_006090515.1 CDS EcDH1_0538 NC_017625.1 570586 570987 D PFAM: ribosome-binding factor A; KEGG: sdy:SDY_3346 ribosome-binding factor A; ribosome-binding factor A 570586..570987 Escherichia coli DH1 12704106 YP_006090516.1 CDS EcDH1_0539 NC_017625.1 570987 571931 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: ssn:SSON_3312 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 570987..571931 Escherichia coli DH1 12704107 YP_006090517.1 CDS EcDH1_0540 NC_017625.1 572080 572349 D PFAM: ribosomal protein S15; KEGG: sdy:SDY_3344 30S ribosomal protein S15; 30S ribosomal protein S15 572080..572349 Escherichia coli DH1 12704108 YP_006090518.1 CDS EcDH1_0541 NC_017625.1 572596 574731 D KEGG: ssn:SSON_3310 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; SMART: KH domain protein; Polyribonucleotide nucleotidyltransferase 572596..574731 Escherichia coli DH1 12704109 YP_006090519.1 CDS EcDH1_0542 NC_017625.1 574840 575724 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ssn:SSON_3309 lipoprotein NlpI; hypothetical protein 574840..575724 Escherichia coli DH1 12704110 YP_006090520.1 CDS EcDH1_0543 NC_017625.1 575904 577793 D PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbc:SbBS512_E3609 cold-shock DEAD box protein A; DEAD/DEAH box helicase 575904..577793 Escherichia coli DH1 12704111 YP_006090521.1 CDS EcDH1_0544 NC_017625.1 577947 579191 D TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: sfv:SFV_3191 tryptophan permease; aromatic amino acid transporter 577947..579191 Escherichia coli DH1 12704112 YP_006090522.1 CDS EcDH1_0545 NC_017625.1 579309 580316 R PFAM: Luciferase-like monooxygenase; KEGG: sbo:SBO_3222 hypothetical protein; luciferase-like monooxygenase complement(579309..580316) Escherichia coli DH1 12704113 YP_006090523.1 CDS EcDH1_0546 NC_017625.1 580397 581275 R PFAM: peptidase U32; KEGG: sdy:SDY_3338 hypothetical protein; peptidase U32 complement(580397..581275) Escherichia coli DH1 12704114 YP_006090524.1 CDS EcDH1_0547 NC_017625.1 581284 582279 R PFAM: peptidase U32; KEGG: ssn:SSON_3304 putative collagenase; peptidase U32 complement(581284..582279) Escherichia coli DH1 12704115 YP_006090525.1 CDS EcDH1_0548 NC_017625.1 582488 583012 D PFAM: Sterol-binding domain protein; KEGG: sdy:SDY_3336 hypothetical protein; Sterol-binding domain-containing protein 582488..583012 Escherichia coli DH1 12704116 YP_006090526.1 CDS EcDH1_0549 NC_017625.1 583006 583509 D PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_3335 hypothetical protein; N-acetyltransferase GCN5 583006..583509 Escherichia coli DH1 12704117 YP_006090527.1 CDS EcDH1_0550 NC_017625.1 583496 583798 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: sbc:SbBS512_E3616 GIY-YIG catalytic domain protein; Excinuclease ABC C subunit domain-containing protein complement(583496..583798) Escherichia coli DH1 12704118 YP_006090528.1 CDS EcDH1_0551 NC_017625.1 583849 584292 D KEGG: sfv:SFV_3184 hypothetical protein; hypothetical protein 583849..584292 Escherichia coli DH1 12704119 YP_006090529.1 CDS EcDH1_0552 NC_017625.1 584272 584790 R TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: sdy:SDY_3332 hypothetical protein; Pfpi family intracellular protease complement(584272..584790) Escherichia coli DH1 12704120 YP_006090530.1 CDS EcDH1_0553 NC_017625.1 584918 585553 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: sbc:SbBS512_E3620 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 584918..585553 Escherichia coli DH1 12704121 YP_006090531.1 CDS EcDH1_0554 NC_017625.1 585626 586666 D PFAM: permease; KEGG: ssn:SSON_3297 hypothetical protein; permease 585626..586666 Escherichia coli DH1 12704122 YP_006090532.1 CDS EcDH1_0555 NC_017625.1 586780 587355 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: sdy:SDY_3329 hypothetical protein; transport-associated complement(586780..587355) Escherichia coli DH1 12704123 YP_006090533.1 CDS EcDH1_0556 NC_017625.1 587365 587955 R KEGG: sdy:SDY_3328 DnaA initiator-associating protein DiaA; DnaA initiator-associating protein DiaA complement(587365..587955) Escherichia coli DH1 12704124 YP_006090534.1 CDS EcDH1_0557 NC_017625.1 587975 588370 R PFAM: protein of unknown function UPF0102; KEGG: ssn:SSON_3294 hypothetical protein; hypothetical protein complement(587975..588370) Escherichia coli DH1 12704125 YP_006090535.1 CDS EcDH1_0558 NC_017625.1 588328 590364 R PFAM: LppC family lipoprotein; KEGG: ssn:SSON_3293 putative glycosylase; LppC family lipoprotein complement(588328..590364) Escherichia coli DH1 12704126 YP_006090536.1 CDS EcDH1_0559 NC_017625.1 590429 591289 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sdy:SDY_3325 hypothetical protein; uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 590429..591289 Escherichia coli DH1 12704127 YP_006090537.1 CDS EcDH1_0560 NC_017625.1 591332 592423 R KEGG: sfv:SFV_3175 putative fimbrial protein; putative fimbrial protein complement(591332..592423) Escherichia coli DH1 12704128 YP_006090538.1 CDS EcDH1_0561 NC_017625.1 592434 594950 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: ssn:SSON_3289 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein complement(592434..594950) Escherichia coli DH1 12704129 YP_006090539.1 CDS EcDH1_0562 NC_017625.1 594979 595674 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfv:SFV_3171 putative chaperone; Pili assembly chaperone, N-terminal complement(594979..595674) Escherichia coli DH1 12704130 YP_006090540.1 CDS EcDH1_0563 NC_017625.1 595754 596338 R PFAM: Fimbrial protein; KEGG: esa:ESA_02345 hypothetical protein; Fimbrial protein complement(595754..596338) Escherichia coli DH1 12704131 YP_006090541.1 CDS EcDH1_0564 NC_017625.1 596739 597440 R PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sfx:S3393 galactosamine-6-phosphate isomerase; glucosamine-6-phosphate deaminase complement(596739..597440) Escherichia coli DH1 12704132 YP_006090542.1 CDS EcDH1_0565 NC_017625.1 597495 598286 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: sfx:S3392 N-acetylgalactosamine-specific PTS system transporter subunit IID; PTS system mannose/fructose/sorbose family transporter subunit IID complement(597495..598286) Escherichia coli DH1 12704133 YP_006090543.1 CDS EcDH1_0566 NC_017625.1 598276 599079 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: sfx:S3391 N-acetylgalactosamine-specific PTS system transporter subunit IIC; PTS system mannose/fructose/sorbose family transporter subunit IIC complement(598276..599079) Escherichia coli DH1 12704134 YP_006090544.1 CDS EcDH1_0567 NC_017625.1 599118 599594 R KEGG: ent:Ent638_3579 N-acetylgalactosamine-specific PTS system transporter subunit IIB; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB complement(599118..599594) Escherichia coli DH1 12704135 YP_006090545.1 CDS EcDH1_0568 NC_017625.1 599761 600621 R KEGG: ent:Ent638_3578 tagatose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; class II aldolase, tagatose bisphosphate family; PFAM: ketose-bisphosphate aldolase class-II; tagatose bisphosphate family class II aldolase complement(599761..600621) Escherichia coli DH1 12704136 YP_006090546.1 CDS EcDH1_0569 NC_017625.1 600634 601788 R TIGRFAM: sugar isomerase, AgaS family; PFAM: sugar isomerase (SIS); KEGG: cko:CKO_04536 hypothetical protein; sugar isomerase complement(600634..601788) Escherichia coli DH1 12704137 YP_006090547.1 CDS EcDH1_0571 NC_017625.1 602662 603063 R PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: cko:CKO_04532 hypothetical protein; PTS sorbose-specific transporter subunit IIC complement(602662..603063) Escherichia coli DH1 12704139 YP_006090548.1 CDS EcDH1_0572 NC_017625.1 603074 603547 R KEGG: sfx:S3383 N-acetylgalactosamine-specific PTS system transporter subunit IIB; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PFAM: PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIB complement(603074..603547) Escherichia coli DH1 12704140 YP_006090549.1 CDS EcDH1_0573 NC_017625.1 603570 604850 R KEGG: sfx:S3382 putative tagatose 6-phosphate kinase 2; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit complement(603570..604850) Escherichia coli DH1 12704141 YP_006090550.1 CDS EcDH1_0574 NC_017625.1 605099 605908 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sfx:S3381 DNA-binding transcriptional regulator AgaR; DeoR family transcriptional regulator 605099..605908 Escherichia coli DH1 12704142 YP_006090551.1 CDS EcDH1_0575 NC_017625.1 605963 606427 R KEGG: ssn:SSON_3287 hypothetical protein; hypothetical protein complement(605963..606427) Escherichia coli DH1 12704143 YP_006090552.1 CDS EcDH1_0576 NC_017625.1 606427 606762 R KEGG: plu:plu3943 putative regulator PrlF; putative regulator PrlF complement(606427..606762) Escherichia coli DH1 12704144 YP_006090553.1 CDS EcDH1_0577 NC_017625.1 606911 608482 R KEGG: sfx:S3380 putative hydrolase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; galactarate dehydratase complement(606911..608482) Escherichia coli DH1 12704145 YP_006090554.1 CDS EcDH1_0578 NC_017625.1 608857 610191 D TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S3379 putative transport protein; d-galactonate transporter 608857..610191 Escherichia coli DH1 12704146 YP_006090555.1 CDS EcDH1_0579 NC_017625.1 610207 610977 D KEGG: sbo:SBO_2991 alpha-dehydro-beta-deoxy-D-glucarate aldolase; TIGRFAM: 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; 2-dehydro-3-deoxyglucarate aldolase 610207..610977 Escherichia coli DH1 12704147 YP_006090556.1 CDS EcDH1_0580 NC_017625.1 611007 611897 D KEGG: sbo:SBO_2990 tartronate semialdehyde reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase 611007..611897 Escherichia coli DH1 12704148 YP_006090557.1 CDS EcDH1_0581 NC_017625.1 611994 613139 D PFAM: glycerate kinase; KEGG: sbo:SBO_2989 glycerate kinase I; glycerate kinase 611994..613139 Escherichia coli DH1 12704149 YP_006090558.1 CDS EcDH1_0582 NC_017625.1 614162 615349 R KEGG: sfv:SFV_3162 hypothetical protein; hypothetical protein complement(614162..615349) Escherichia coli DH1 12704151 YP_006090559.1 CDS EcDH1_0583 NC_017625.1 615371 615910 R KEGG: sfv:SFV_3161 hypothetical protein; hypothetical protein complement(615371..615910) Escherichia coli DH1 12704152 YP_006090560.1 CDS EcDH1_0584 NC_017625.1 616166 616510 R KEGG: sbo:SBO_2984 DNA-binding transcriptional activator TdcR; DNA-binding transcriptional activator TdcR complement(616166..616510) Escherichia coli DH1 12704153 YP_006090561.1 CDS EcDH1_0585 NC_017625.1 616699 617637 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3310 DNA-binding transcriptional activator; LysR family transcriptional regulator 616699..617637 Escherichia coli DH1 12704154 YP_006090562.1 CDS EcDH1_0586 NC_017625.1 617736 618725 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sdy:SDY_3309 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein subunit beta 617736..618725 Escherichia coli DH1 12704155 YP_006090563.1 CDS EcDH1_0587 NC_017625.1 618747 620078 D TIGRFAM: serine transporter; KEGG: ssn:SSON_3273 anaerobically inducible L-threonine, L-serine permease; serine transporter 618747..620078 Escherichia coli DH1 12704156 YP_006090564.1 CDS EcDH1_0588 NC_017625.1 620104 621312 D TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: sbo:SBO_2980 propionate/acetate kinase; acetate kinase 620104..621312 Escherichia coli DH1 12704157 YP_006090565.1 CDS EcDH1_0589 NC_017625.1 621346 623640 D KEGG: sbc:SbBS512_E3243 formate acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase 621346..623640 Escherichia coli DH1 12704158 YP_006090566.1 CDS EcDH1_0590 NC_017625.1 623654 624043 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sbc:SbBS512_E3244 putative endoribonuclease L-PSP; endoribonuclease L-PSP 623654..624043 Escherichia coli DH1 12704159 YP_006090567.1 CDS EcDH1_0591 NC_017625.1 624115 625479 D KEGG: sbc:SbBS512_E3245 L-serine ammonia-lyase TdcG; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 624115..625479 Escherichia coli DH1 12704160 YP_006090568.1 CDS EcDH1_0592 NC_017625.1 625754 627085 D TIGRFAM: serine transporter; KEGG: ssn:SSON_3268 putative transport system permease protein; serine transporter 625754..627085 Escherichia coli DH1 12704161 YP_006090569.1 CDS EcDH1_0593 NC_017625.1 627113 628423 D PFAM: protein of unknown function DUF1063; KEGG: sbo:SBO_2975 hypothetical protein; hypothetical protein 627113..628423 Escherichia coli DH1 12704162 YP_006090570.1 CDS EcDH1_0594 NC_017625.1 628557 628721 R KEGG: sdy:SDY_3299 hypothetical protein; hypothetical protein complement(628557..628721) Escherichia coli DH1 12704163 YP_006090571.1 CDS EcDH1_0595 NC_017625.1 628744 629445 R PFAM: Pirin domain protein; KEGG: sbc:SbBS512_E3251 pirin family protein; Pirin domain-containing protein complement(628744..629445) Escherichia coli DH1 12704164 YP_006090572.1 CDS EcDH1_0596 NC_017625.1 629550 630446 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_2972 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 629550..630446 Escherichia coli DH1 12704165 YP_006090573.1 CDS EcDH1_0597 NC_017625.1 630497 630853 R PFAM: protein of unknown function DUF805; KEGG: ssn:SSON_3263 putative cytochrome; hypothetical protein complement(630497..630853) Escherichia coli DH1 12704166 YP_006090574.1 CDS EcDH1_0598 NC_017625.1 631095 631460 R PFAM: protein of unknown function DUF805; KEGG: sbc:SbBS512_E3258 putative inner membrane protein YhaH; hypothetical protein complement(631095..631460) Escherichia coli DH1 12704167 YP_006090575.1 CDS EcDH1_0599 NC_017625.1 631754 632740 R KEGG: sbc:SbBS512_E3259 hypothetical protein; hypothetical protein complement(631754..632740) Escherichia coli DH1 12704168 YP_006090576.1 CDS EcDH1_0600 NC_017625.1 632810 633202 R PFAM: DoxX family protein; KEGG: sdy:SDY_3290 hypothetical protein; DoxX family protein complement(632810..633202) Escherichia coli DH1 12704169 YP_006090577.1 CDS EcDH1_0601 NC_017625.1 633388 633687 R KEGG: sbc:SbBS512_E3261 hypothetical protein; hypothetical protein complement(633388..633687) Escherichia coli DH1 12704170 YP_006090578.1 CDS EcDH1_0602 NC_017625.1 633677 634081 R KEGG: sbc:SbBS512_E3262 hypothetical protein; hypothetical protein complement(633677..634081) Escherichia coli DH1 12704171 YP_006090579.1 CDS EcDH1_0603 NC_017625.1 634084 634389 R PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_3285 hypothetical protein; hypothetical protein complement(634084..634389) Escherichia coli DH1 12704172 YP_006090580.1 CDS EcDH1_0604 NC_017625.1 634427 634795 R PFAM: protein of unknown function DUF1090; KEGG: sbc:SbBS512_E3264 hypothetical protein; hypothetical protein complement(634427..634795) Escherichia coli DH1 12704173 YP_006090581.1 CDS EcDH1_0605 NC_017625.1 634942 635325 R KEGG: sbc:SbBS512_E3265 hypothetical protein; hypothetical protein complement(634942..635325) Escherichia coli DH1 12704174 YP_006090582.1 CDS EcDH1_0606 NC_017625.1 635329 635991 R PFAM: SNARE associated Golgi protein; KEGG: sdy:SDY_3282 hypothetical protein; hypothetical protein complement(635329..635991) Escherichia coli DH1 12704175 YP_006090583.1 CDS EcDH1_0607 NC_017625.1 636336 637112 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbo:SBO_2961 DNA-binding transcriptional repressor ExuR; regulatory protein GntR HTH complement(636336..637112) Escherichia coli DH1 12704176 YP_006090584.1 CDS EcDH1_0608 NC_017625.1 637242 638540 R TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3134 transport protein of hexuronates; d-galactonate transporter complement(637242..638540) Escherichia coli DH1 12704177 YP_006090585.1 CDS EcDH1_0609 NC_017625.1 639023 640435 D PFAM: Glucuronate isomerase; KEGG: sbo:SBO_2953 glucuronate isomerase; glucuronate isomerase 639023..640435 Escherichia coli DH1 12704178 YP_006090586.1 CDS EcDH1_0610 NC_017625.1 640450 641937 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: sbc:SbBS512_E3527 altronate dehydratase; altronate dehydratase 640450..641937 Escherichia coli DH1 12704179 YP_006090587.1 CDS EcDH1_0611 NC_017625.1 642020 642571 D KEGG: ssn:SSON_3243 hypothetical protein; hypothetical protein 642020..642571 Escherichia coli DH1 12704180 YP_006090588.1 CDS EcDH1_0612 NC_017625.1 642576 643820 R PFAM: sodium:dicarboxylate symporter; KEGG: ssn:SSON_3242 putative transport protein; sodium:dicarboxylate symporter complement(642576..643820) Escherichia coli DH1 12704181 YP_006090589.1 CDS EcDH1_0613 NC_017625.1 644219 645184 R PFAM: Integral membrane protein TerC; KEGG: ssn:SSON_3117 putative transport protein; integral membrane protein TerC complement(644219..645184) Escherichia coli DH1 12704182 YP_006090590.1 CDS EcDH1_0614 NC_017625.1 645467 646453 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sfv:SFV_3128 hypothetical protein; oxidoreductase domain-containing protein complement(645467..646453) Escherichia coli DH1 12704183 YP_006090591.1 CDS EcDH1_0615 NC_017625.1 646532 647224 R PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_3127 hypothetical protein; hypothetical protein complement(646532..647224) Escherichia coli DH1 12704184 YP_006090592.1 CDS EcDH1_0616 NC_017625.1 647301 647804 R PFAM: protein of unknown function DUF45; KEGG: sdy:SDY_3268 hypothetical protein; hypothetical protein complement(647301..647804) Escherichia coli DH1 12704185 YP_006090593.1 CDS EcDH1_0617 NC_017625.1 647889 649025 D PFAM: methyltransferase small; Methyltransferase type 12; KEGG: sdy:SDY_3267 putative enzyme; rRNA (guanine-N(2)-)-methyltransferase 647889..649025 Escherichia coli DH1 12704186 YP_006090594.1 CDS EcDH1_0618 NC_017625.1 649309 649623 D KEGG: ssn:SSON_3122 hypothetical protein; hypothetical protein 649309..649623 Escherichia coli DH1 12704187 YP_006090595.1 CDS EcDH1_0619 NC_017625.1 649620 650036 D PFAM: helix-turn-helix domain protein; KEGG: sfv:SFV_3123 hypothetical protein; putative transcriptional regulator with HTH domain 649620..650036 Escherichia coli DH1 12704188 YP_006090596.1 CDS EcDH1_0620 NC_017625.1 650081 652099 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssn:SSON_3124 putative NADPH dehydrogenase; NADH:flavin oxidoreductase complement(650081..652099) Escherichia coli DH1 12704189 YP_006090597.1 CDS EcDH1_0621 NC_017625.1 652525 654876 R KEGG: sfl:SF3120 glycosyl hydrolase; glycosyl hydrolase complement(652525..654876) Escherichia coli DH1 12704190 YP_006090598.1 CDS EcDH1_0622 NC_017625.1 654893 655963 R KEGG: sbc:SbBS512_E3514 hypothetical protein; hypothetical protein complement(654893..655963) Escherichia coli DH1 12704191 YP_006090599.1 CDS EcDH1_0623 NC_017625.1 656097 657530 R PFAM: amino acid permease-associated region; KEGG: sbo:SBO_2937 putative oxidoreductase; amino acid permease complement(656097..657530) Escherichia coli DH1 12704192 YP_006090600.1 CDS EcDH1_0624 NC_017625.1 657593 658042 R PFAM: conserved hypothetical protein; KEGG: ssn:SSON_3216 cryptic beta-D-galactosidase subunit beta; hypothetical protein complement(657593..658042) Escherichia coli DH1 12704193 YP_006090601.1 CDS EcDH1_0625 NC_017625.1 658039 661131 R PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: sbo:SBO_2935 cryptic beta-D-galactosidase subunit alpha; glycoside hydrolase family protein complement(658039..661131) Escherichia coli DH1 12704194 YP_006090602.1 CDS EcDH1_0626 NC_017625.1 661315 662298 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_3259 DNA-binding transcriptional repressor; LacI family transcriptional regulator complement(661315..662298) Escherichia coli DH1 12704195 YP_006090603.1 CDS EcDH1_0627 NC_017625.1 662517 662849 D PFAM: t-RNA-binding domain protein; KEGG: sbo:SBO_2933 hypothetical protein; t-RNA-binding domain-containing protein 662517..662849 Escherichia coli DH1 12704196 YP_006090604.1 CDS EcDH1_0628 NC_017625.1 662891 664180 R KEGG: sfv:SFV_3114 putrescine--2-oxoglutarate aminotransferase; TIGRFAM: putrescine aminotransferase; PFAM: aminotransferase class-III; putrescine aminotransferase complement(662891..664180) Escherichia coli DH1 12704197 YP_006090605.1 CDS EcDH1_0629 NC_017625.1 664688 666208 D KEGG: ssn:SSON_3210 aerotaxis sensor receptor, flavoprotein; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 664688..666208 Escherichia coli DH1 12704198 YP_006090606.1 CDS EcDH1_0630 NC_017625.1 666362 666985 R PFAM: transcriptional regulator PadR family protein; KEGG: sbo:SBO_2930 hypothetical protein; PadR-like family transcriptional regulator complement(666362..666985) Escherichia coli DH1 12704199 YP_006090607.1 CDS EcDH1_0631 NC_017625.1 667273 668037 D PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: sbc:SbBS512_E3506 siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain-containing protein 667273..668037 Escherichia coli DH1 12704200 YP_006090608.1 CDS EcDH1_0632 NC_017625.1 668291 668797 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: sbc:SbBS512_E3504 G/U mismatch-specific DNA glycosylase; uracil-DNA glycosylase 668291..668797 Escherichia coli DH1 12704202 YP_006090609.1 CDS EcDH1_0633 NC_017625.1 668876 670717 R TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 non-essential domain protein; sigma-70 region 1.2; KEGG: sbo:SBO_2925 RNA polymerase sigma factor RpoD; RNA polymerase sigma-70 subunit RpoD complement(668876..670717) Escherichia coli DH1 12704203 YP_006090610.1 CDS EcDH1_0634 NC_017625.1 670912 672657 R KEGG: ssn:SSON_3203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; TOPRIM domain protein; DNA primase DnaG DnaB-binding; DNA primase catalytic core domain; SMART: Toprim sub domain protein; DNA primase complement(670912..672657) Escherichia coli DH1 12704204 YP_006090611.1 CDS EcDH1_0635 NC_017625.1 672768 672983 R PFAM: ribosomal protein S21; KEGG: kpe:KPK_0646 ribosomal protein S21; 30S ribosomal protein S21 complement(672768..672983) Escherichia coli DH1 12704205 YP_006090612.1 CDS EcDH1_0636 NC_017625.1 673221 674234 D KEGG: sdy:SDY_3248 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; glycoprotease family metalloendopeptidase 673221..674234 Escherichia coli DH1 12704206 YP_006090613.1 CDS EcDH1_0637 NC_017625.1 674277 675740 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: sfv:SFV_3103 hypothetical protein; anion transporter complement(674277..675740) Escherichia coli DH1 12704207 YP_006090614.1 CDS EcDH1_0639 NC_017625.1 676389 677300 R KEGG: sbo:SBO_2919 tartrate dehydratase subunit alpha; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha complement(676389..677300) Escherichia coli DH1 12704209 YP_006090615.1 CDS EcDH1_0640 NC_017625.1 677507 678439 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_04450 transcriptional activator TtdR; LysR family transcriptional regulator 677507..678439 Escherichia coli DH1 12704210 YP_006090616.1 CDS EcDH1_0641 NC_017625.1 678452 679069 R PFAM: protein of unknown function DUF205; KEGG: sdy:SDY_3242 hypothetical protein; hypothetical protein complement(678452..679069) Escherichia coli DH1 12704211 YP_006090617.1 CDS EcDH1_0642 NC_017625.1 679174 679542 D TIGRFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_3241 bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; dihydroneopterin aldolase 679174..679542 Escherichia coli DH1 12704212 YP_006090618.1 CDS EcDH1_0643 NC_017625.1 679632 680453 D KEGG: sbc:SbBS512_E3488 undecaprenyl-diphosphatase BacA; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; undecaprenol kinase 679632..680453 Escherichia coli DH1 12704213 YP_006090619.1 CDS EcDH1_0644 NC_017625.1 680634 681872 R PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: sbc:SbBS512_E3487 multifunctional CCA protein; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(680634..681872) Escherichia coli DH1 12704214 YP_006090620.1 CDS EcDH1_0645 NC_017625.1 681936 682556 R SMART: SH3 domain protein; KEGG: ssn:SSON_3192 putative signal transduction protein; SH3 domain-containing protein complement(681936..682556) Escherichia coli DH1 12704215 YP_006090621.1 CDS EcDH1_0646 NC_017625.1 682798 684099 D PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: sdy:SDY_3237 hypothetical protein; adenylate cyclase 682798..684099 Escherichia coli DH1 12704216 YP_006090622.1 CDS EcDH1_0647 NC_017625.1 684122 686962 D PFAM: glutamate-ammonia ligase adenylyltransferase; GlnD PII-uridylyltransferase; KEGG: sfv:SFV_3093 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 684122..686962 Escherichia coli DH1 12704217 YP_006090623.1 CDS EcDH1_0648 NC_017625.1 687010 688443 D TIGRFAM: cytidyltransferase-related domain protein; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: sfv:SFV_3092 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; rfaE bifunctional protein 687010..688443 Escherichia coli DH1 12704218 YP_006090624.1 CDS EcDH1_0649 NC_017625.1 689238 690899 R PFAM: band 7 protein; KEGG: ssn:SSON_3188 hypothetical protein; hypothetical protein complement(689238..690899) Escherichia coli DH1 12704219 YP_006090625.1 CDS EcDH1_0650 NC_017625.1 690926 691555 R PFAM: protein of unknown function DUF1449; KEGG: ssn:SSON_3187 putative oxidoreductase; hypothetical protein complement(690926..691555) Escherichia coli DH1 12704220 YP_006090626.1 CDS EcDH1_0651 NC_017625.1 691824 692024 D PFAM: Glycogen synthesis protein; KEGG: ssn:SSON_3186 glycogen synthesis protein GlgS; Glycogen synthesis protein 691824..692024 Escherichia coli DH1 12704221 YP_006090627.1 CDS EcDH1_0652 NC_017625.1 692067 693131 R KEGG: ssn:SSON_3184 hypothetical protein; hypothetical protein complement(692067..693131) Escherichia coli DH1 12704222 YP_006090628.1 CDS EcDH1_0653 NC_017625.1 693133 693882 R PFAM: Pili assembly chaperone, N-terminal; KEGG: ssn:SSON_3183 hypothetical protein; Pili assembly chaperone, N-terminal complement(693133..693882) Escherichia coli DH1 12704223 YP_006090629.1 CDS EcDH1_0654 NC_017625.1 693898 696363 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: yps:YPTB3895 outer membrane fimbrial usher porin; fimbrial biogenesis outer membrane usher protein complement(693898..696363) Escherichia coli DH1 12704224 YP_006090630.1 CDS EcDH1_0655 NC_017625.1 696348 697253 R PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit complement(696348..697253) Escherichia coli DH1 12704225 YP_006090631.1 CDS EcDH1_0656 NC_017625.1 697211 697576 R PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein complement(697211..697576) Escherichia coli DH1 12704226 YP_006090632.1 CDS EcDH1_0657 NC_017625.1 697798 698349 R PFAM: Fimbrial protein; KEGG: ssn:SSON_3180 predicted fimbrial-like adhesin protein; Fimbrial protein complement(697798..698349) Escherichia coli DH1 12704227 YP_006090633.1 CDS EcDH1_0658 NC_017625.1 698633 698923 R PFAM: protein of unknown function DUF526; KEGG: sfv:SFV_3086 hypothetical protein; hypothetical protein complement(698633..698923) Escherichia coli DH1 12704228 YP_006090634.1 CDS EcDH1_0659 NC_017625.1 699297 699950 D TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; KEGG: sdy:SDY_3226 3,4-dihydroxy-2-butanone 4-phosphate synthase; 3,4-dihydroxy-2-butanone 4-phosphate synthase 699297..699950 Escherichia coli DH1 12704229 YP_006090635.1 CDS EcDH1_0660 NC_017625.1 700212 700382 D KEGG: sbc:SbBS512_E3475 hypothetical protein; hypothetical protein 700212..700382 Escherichia coli DH1 12704230 YP_006090636.1 CDS EcDH1_0661 NC_017625.1 700440 701213 R PFAM: zinc/iron permease; KEGG: ssn:SSON_3177 zinc transporter ZupT; zinc/iron permease complement(700440..701213) Escherichia coli DH1 12704231 YP_006090637.1 CDS EcDH1_0662 NC_017625.1 701329 702144 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: sfv:SFV_3083 hypothetical protein; extradiol ring-cleavage dioxygenase class III protein subunit B 701329..702144 Escherichia coli DH1 12704232 YP_006090638.1 CDS EcDH1_0663 NC_017625.1 702182 703342 R PFAM: glutathionylspermidine synthase; KEGG: sbc:SbBS512_E3470 glutathionylspermidine synthase family protein; glutathionylspermidine synthase complement(702182..703342) Escherichia coli DH1 12704233 YP_006090639.1 CDS EcDH1_0664 NC_017625.1 703348 704019 R PFAM: protein of unknown function DUF1190; KEGG: ssn:SSON_3174 hypothetical protein; hypothetical protein complement(703348..704019) Escherichia coli DH1 12704234 YP_006090640.1 CDS EcDH1_0665 NC_017625.1 704167 705648 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: ssn:SSON_3173 outer membrane channel protein; TolC family type I secretion outer membrane protein complement(704167..705648) Escherichia coli DH1 12704235 YP_006090641.1 CDS EcDH1_0666 NC_017625.1 705853 706482 D PFAM: NUDIX hydrolase; KEGG: sdy:SDY_3206 ADP-ribose pyrophosphatase NudF; ADP-ribose diphosphatase 705853..706482 Escherichia coli DH1 12704236 YP_006090642.1 CDS EcDH1_0667 NC_017625.1 706483 706905 D PFAM: protein of unknown function DUF1249; KEGG: sbc:SbBS512_E3466 hypothetical protein; hypothetical protein 706483..706905 Escherichia coli DH1 12704237 YP_006090643.1 CDS EcDH1_0668 NC_017625.1 706930 707757 D PFAM: metallophosphoesterase; Calcineurin phosphoesterase domain protein; KEGG: sdy:SDY_3208 cyclic 3',5'-adenosine monophosphate phosphodiesterase; calcineurin phosphoesterase 706930..707757 Escherichia coli DH1 12704238 YP_006090644.1 CDS EcDH1_0669 NC_017625.1 707757 708338 D PFAM: protein of unknown function UPF0227; KEGG: sdy:SDY_3209 esterase YqiA; hypothetical protein 707757..708338 Escherichia coli DH1 12704239 YP_006090645.1 CDS EcDH1_0670 NC_017625.1 708367 710259 D KEGG: sbo:SBO_2888 DNA topoisomerase IV subunit B; TIGRFAM: DNA topoisomerase IV, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA topoisomerase IV subunit B 708367..710259 Escherichia coli DH1 12704240 YP_006090646.1 CDS EcDH1_0671 NC_017625.1 710307 710621 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sbc:SbBS512_E3462 quinol monooxygenase YgiN; antibiotic biosynthesis monooxygenase complement(710307..710621) Escherichia coli DH1 12704241 YP_006090647.1 CDS EcDH1_0672 NC_017625.1 710652 711233 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sbc:SbBS512_E3461 modulator of drug activity B; NAD(P)H dehydrogenase (quinone) complement(710652..711233) Escherichia coli DH1 12704242 YP_006090648.1 CDS EcDH1_0673 NC_017625.1 711552 711884 D KEGG: sfx:S3272 hypothetical protein; hypothetical protein 711552..711884 Escherichia coli DH1 12704243 YP_006090649.1 CDS EcDH1_0674 NC_017625.1 711930 713279 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_3165 sensor protein QseC; histidine kinase complement(711930..713279) Escherichia coli DH1 12704244 YP_006090650.1 CDS EcDH1_0675 NC_017625.1 713276 713935 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_3164 DNA-binding response regulator in two-component regulatory system with QseC; winged helix family two component transcriptional regulator complement(713276..713935) Escherichia coli DH1 12704245 YP_006090651.1 CDS EcDH1_0676 NC_017625.1 714087 714479 D PFAM: conserved hypothetical protein; KEGG: sdy:SDY_3215 hypothetical protein; hypothetical protein 714087..714479 Escherichia coli DH1 12704246 YP_006090652.1 CDS EcDH1_0677 NC_017625.1 714532 715014 D PFAM: transcription activator effector binding; KEGG: ssn:SSON_3162 hypothetical protein; transcription activator effector binding protein 714532..715014 Escherichia coli DH1 12704247 YP_006090653.1 CDS EcDH1_0678 NC_017625.1 715219 715515 D KEGG: yps:YPTB3124 hypothetical protein; hypothetical protein 715219..715515 Escherichia coli DH1 12704248 YP_006090654.1 CDS EcDH1_0679 NC_017625.1 715517 715912 D SMART: helix-turn-helix domain protein; KEGG: ypb:YPTS_3247 XRE family transcriptional regulator; XRE family transcriptional regulator 715517..715912 Escherichia coli DH1 12704249 YP_006090655.1 CDS EcDH1_0680 NC_017625.1 716045 717652 D PFAM: extracellular solute-binding protein family 5; KEGG: sdy:SDY_3217 putative binding protein; family 5 extracellular solute-binding protein 716045..717652 Escherichia coli DH1 12704250 YP_006090656.1 CDS EcDH1_0681 NC_017625.1 717790 720048 D KEGG: sfv:SFV_3068 DNA topoisomerase IV subunit A; TIGRFAM: DNA topoisomerase IV, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA topoisomerase IV subunit A 717790..720048 Escherichia coli DH1 12704251 YP_006090657.1 CDS EcDH1_0682 NC_017625.1 720282 721019 D KEGG: sbc:SbBS512_E3455 1-acyl-sn-glycerol-3-phosphate acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 720282..721019 Escherichia coli DH1 12704252 YP_006090658.1 CDS EcDH1_0684 NC_017625.1 722617 724836 D PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sbc:SbBS512_E3451 radical SAM domain protein; radical SAM protein 722617..724836 Escherichia coli DH1 12704254 YP_006090659.1 CDS EcDH1_0685 NC_017625.1 724879 725136 R KEGG: sbc:SbBS512_E3443 putative lipoprotein; putative lipoprotein complement(724879..725136) Escherichia coli DH1 12704255 YP_006090660.1 CDS EcDH1_0686 NC_017625.1 725187 726113 R KEGG: sbc:SbBS512_E3442 hypothetical protein; hypothetical protein complement(725187..726113) Escherichia coli DH1 12704256 YP_006090661.1 CDS EcDH1_0687 NC_017625.1 726313 727140 R PFAM: aldo/keto reductase; KEGG: sfx:S3260 2,5-diketo-D-gluconate reductase A; 2,5-didehydrogluconate reductase complement(726313..727140) Escherichia coli DH1 12704257 YP_006090662.1 CDS EcDH1_0688 NC_017625.1 727245 728408 R PFAM: iron-containing alcohol dehydrogenase; KEGG: sbc:SbBS512_E3439 alcohol dehydrogenase YqhD; iron-containing alcohol dehydrogenase complement(727245..728408) Escherichia coli DH1 12704258 YP_006090663.1 CDS EcDH1_0689 NC_017625.1 728545 729501 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC-type transcriptional regulator domain protein; KEGG: sbc:SbBS512_E3437 transcriptional regulator, AraC family; AraC family transcriptional regulator 728545..729501 Escherichia coli DH1 12704259 YP_006090664.1 CDS EcDH1_0690 NC_017625.1 729541 730200 R PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_3152 hypothetical protein; hypothetical protein complement(729541..730200) Escherichia coli DH1 12704260 YP_006090665.1 CDS EcDH1_0691 NC_017625.1 730340 731527 R TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: ssn:SSON_3151 cystathionine beta-lyase; cystathionine beta-lyase complement(730340..731527) Escherichia coli DH1 12704261 YP_006090666.1 CDS EcDH1_0692 NC_017625.1 731779 732513 D TIGRFAM: tonB-system energizer ExbB; PFAM: MotA/TolQ/ExbB proton channel; KEGG: sdy:SDY_3067 biopolymer transport protein ExbB; tonB-system energizer ExbB 731779..732513 Escherichia coli DH1 12704262 YP_006090667.1 CDS EcDH1_0693 NC_017625.1 732520 732945 D TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sbc:SbBS512_E3433 TonB system transport protein ExbD; TonB system transport protein ExbD 732520..732945 Escherichia coli DH1 12704263 YP_006090668.1 CDS EcDH1_0694 NC_017625.1 733217 734101 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E3432 oxidoreductase, short chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(733217..734101) Escherichia coli DH1 12704264 YP_006090669.1 CDS EcDH1_0695 NC_017625.1 734292 734786 D PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E3431 hypothetical protein; hypothetical protein 734292..734786 Escherichia coli DH1 12704265 YP_006090670.1 CDS EcDH1_0696 NC_017625.1 734826 735866 R PFAM: aldo/keto reductase; KEGG: sfv:SFV_3053 aldo-keto reductase; aldo/keto reductase complement(734826..735866) Escherichia coli DH1 12704266 YP_006090671.1 CDS EcDH1_0698 NC_017625.1 737026 737313 D KEGG: sdy:SDY_3075 hypothetical protein; hypothetical protein 737026..737313 Escherichia coli DH1 12704268 YP_006090672.1 CDS EcDH1_0699 NC_017625.1 737502 738620 D KEGG: sbc:SbBS512_E3424 hydrogenase-2 small chain; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA 737502..738620 Escherichia coli DH1 12704269 YP_006090673.1 CDS EcDH1_0700 NC_017625.1 738623 739609 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2867 hydrogenase 2 protein HybA; 4Fe-4S ferredoxin 738623..739609 Escherichia coli DH1 12704270 YP_006090674.1 CDS EcDH1_0701 NC_017625.1 739599 740777 D PFAM: Polysulphide reductase NrfD; KEGG: sdy:SDY_3078 predicted hydrogenase 2 cytochrome b type component; polysulfide reductase NrfD 739599..740777 Escherichia coli DH1 12704271 YP_006090675.1 CDS EcDH1_0702 NC_017625.1 740774 742477 D PFAM: nickel-dependent hydrogenase large subunit; KEGG: sbc:SbBS512_E3421 hydrogenase-2, large subunit; nickel-dependent hydrogenase large subunit 740774..742477 Escherichia coli DH1 12704272 YP_006090676.1 CDS EcDH1_0703 NC_017625.1 742477 742971 D TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sbc:SbBS512_E3420 hydrogenase expression/formation protein; hydrogenase expression/formation protein 742477..742971 Escherichia coli DH1 12704273 YP_006090677.1 CDS EcDH1_0704 NC_017625.1 742964 743452 D KEGG: sbc:SbBS512_E3419 hydrogenase-2 operon protein HybE; hydrogenase-2 operon protein HybE 742964..743452 Escherichia coli DH1 12704274 YP_006090678.1 CDS EcDH1_0705 NC_017625.1 743445 743786 D TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: sbc:SbBS512_E3418 hydrogenase nickel insertion protein HypA; hydrogenase nickel incorporation protein HypA 743445..743786 Escherichia coli DH1 12704275 YP_006090679.1 CDS EcDH1_0706 NC_017625.1 743799 744047 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sdy:SDY_3083 hydrogenase 2 accessory protein HypG; hydrogenase assembly chaperone HypC/HupF 743799..744047 Escherichia coli DH1 12704276 YP_006090680.1 CDS EcDH1_0707 NC_017625.1 744170 745036 R PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E3416 glutathione S-transferase; glutathione S-transferase complement(744170..745036) Escherichia coli DH1 12704277 YP_006090681.1 CDS EcDH1_0708 NC_017625.1 745241 747100 D PFAM: glutathionylspermidine synthase; CHAP domain containing protein; KEGG: sdy:SDY_3085 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; glutathionylspermidine synthase 745241..747100 Escherichia coli DH1 12704278 YP_006090682.1 CDS EcDH1_0709 NC_017625.1 747392 748891 D PFAM: phosphate transporter; KEGG: ssn:SSON_3132 low-affinity phosphate transport; phosphate transporter 747392..748891 Escherichia coli DH1 12704279 YP_006090683.1 CDS EcDH1_0710 NC_017625.1 748940 749632 R KEGG: sfx:S3234 hypothetical protein; hypothetical protein complement(748940..749632) Escherichia coli DH1 12704280 YP_006090684.1 CDS EcDH1_0711 NC_017625.1 749821 750519 D KEGG: ssn:SSON_3219 hypothetical protein; hypothetical protein 749821..750519 Escherichia coli DH1 12704281 YP_006090685.1 CDS EcDH1_0712 NC_017625.1 750551 751309 D KEGG: ssn:SSON_3220 hypothetical protein; hypothetical protein 750551..751309 Escherichia coli DH1 12704282 YP_006090686.1 CDS EcDH1_0713 NC_017625.1 751355 752422 D PFAM: polysaccharide biosynthesis protein; KEGG: ssn:SSON_3221 hypothetical protein; polysaccharide biosynthesis protein 751355..752422 Escherichia coli DH1 12704283 YP_006090687.1 CDS EcDH1_0714 NC_017625.1 752569 753549 R PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein complement(752569..753549) Escherichia coli DH1 12704284 YP_006090688.1 CDS EcDH1_0715 NC_017625.1 753584 754720 D KEGG: sfv:SFV_3037 hypothetical protein; hypothetical protein 753584..754720 Escherichia coli DH1 12704285 YP_006090689.1 CDS EcDH1_0716 NC_017625.1 754727 755491 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfx:S3220 DNA-binding transcriptional regulator GlcC; GntR family transcriptional regulator complement(754727..755491) Escherichia coli DH1 12704286 YP_006090690.1 CDS EcDH1_0717 NC_017625.1 755742 757241 D TIGRFAM: glycolate oxidase, subunit GlcD; PFAM: FAD linked oxidase domain protein; KEGG: ppw:PputW619_2306 glycolate oxidase, subunit GlcD; glycolate oxidase subunit GlcD 755742..757241 Escherichia coli DH1 12704287 YP_006090691.1 CDS EcDH1_0718 NC_017625.1 757241 758293 D PFAM: FAD linked oxidase domain protein; KEGG: psa:PST_0432 glycolate oxidase FAD binding subunit; FAD linked oxidase domain-containing protein 757241..758293 Escherichia coli DH1 12704288 YP_006090692.1 CDS EcDH1_0719 NC_017625.1 758304 759527 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ppw:PputW619_2304 hypothetical protein; hypothetical protein 758304..759527 Escherichia coli DH1 12704289 YP_006090693.1 CDS EcDH1_0720 NC_017625.1 759532 759936 D PFAM: protein of unknown function DUF336; KEGG: sfv:SFV_3032 hypothetical protein; hypothetical protein 759532..759936 Escherichia coli DH1 12704290 YP_006090694.1 CDS EcDH1_0721 NC_017625.1 759958 762129 D KEGG: sfv:SFV_3031 malate synthase G; TIGRFAM: malate synthase G; PFAM: malate synthase; malate synthase G 759958..762129 Escherichia coli DH1 12704291 YP_006090695.1 CDS EcDH1_0722 NC_017625.1 762484 764166 D TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: sfv:SFV_3030 putative permease; L-lactate transport 762484..764166 Escherichia coli DH1 12704292 YP_006090696.1 CDS EcDH1_0723 NC_017625.1 764651 769213 D KEGG: vvu:VV1_0767 hypothetical protein; hypothetical protein 764651..769213 Escherichia coli DH1 12704293 YP_006090697.1 CDS EcDH1_0724 NC_017625.1 769411 770220 D PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: ppr:PBPRA3203 putative leader peptidase PilD; acid phosphatase 769411..770220 Escherichia coli DH1 12704294 YP_006090698.1 CDS EcDH1_0725 NC_017625.1 770286 770696 D KEGG: vco:VC0395_A1307 hypothetical protein; hypothetical protein 770286..770696 Escherichia coli DH1 12704295 YP_006090699.1 CDS EcDH1_0726 NC_017625.1 770855 771709 D TIGRFAM: general secretion pathway protein C; KEGG: sdy:SDY_3092 putative type II secretion protein GspC; general secretion pathway protein C 770855..771709 Escherichia coli DH1 12704296 YP_006090700.1 CDS EcDH1_0727 NC_017625.1 771793 772635 D TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: sbc:SbBS512_E3404 general secretion pathway protein GspL; general secretion pathway protein L 771793..772635 Escherichia coli DH1 12704297 YP_006090701.1 CDS EcDH1_0728 NC_017625.1 772637 773173 D PFAM: General secretion pathway M protein; KEGG: sbc:SbBS512_E3403 general secretion pathway protein M; general secretion pathway protein M 772637..773173 Escherichia coli DH1 12704298 YP_006090702.1 CDS EcDH1_0729 NC_017625.1 773503 774210 R PFAM: protein of unknown function DUF554; KEGG: ssn:SSON_3229 putative transport protein; hypothetical protein complement(773503..774210) Escherichia coli DH1 12704300 YP_006090703.1 CDS EcDH1_0730 NC_017625.1 774608 776743 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sfx:S3165 ornithine decarboxylase; Ornithine decarboxylase 774608..776743 Escherichia coli DH1 12704301 YP_006090704.1 CDS EcDH1_0731 NC_017625.1 776793 778049 R TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3397 nucleoside permease NupG; nucleoside transporter complement(776793..778049) Escherichia coli DH1 12704302 YP_006090705.1 CDS EcDH1_0732 NC_017625.1 778251 779333 R PFAM: Lytic transglycosylase catalytic; KEGG: sdy:SDY_3109 murein transglycosylase C; lytic transglycosylase complement(778251..779333) Escherichia coli DH1 12704303 YP_006090706.1 CDS EcDH1_0733 NC_017625.1 779395 779670 R PFAM: Fe(II) trafficking protein YggX; KEGG: sdy:SDY_3110 hypothetical protein; protein-tyrosine-phosphatase complement(779395..779670) Escherichia coli DH1 12704304 YP_006090707.1 CDS EcDH1_0734 NC_017625.1 779698 780750 R KEGG: sbo:SBO_3029 adenine DNA glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; A/G-specific adenine glycosylase MutY; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase complement(779698..780750) Escherichia coli DH1 12704305 YP_006090708.1 CDS EcDH1_0735 NC_017625.1 780911 781630 D KEGG: sbc:SbBS512_E3393 tRNA (guanine-N(7)-)-methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 780911..781630 Escherichia coli DH1 12704306 YP_006090709.1 CDS EcDH1_0736 NC_017625.1 781630 781956 D PFAM: protein of unknown function DUF469; KEGG: sdy:SDY_3113 hypothetical protein; hypothetical protein 781630..781956 Escherichia coli DH1 12704307 YP_006090710.1 CDS EcDH1_0737 NC_017625.1 782140 782859 D KEGG: sdy:SDY_3114 hypothetical protein; hypothetical protein 782140..782859 Escherichia coli DH1 12704308 YP_006090711.1 CDS EcDH1_0738 NC_017625.1 783035 784081 D TIGRFAM: L-asparaginase, type II; PFAM: Asparaginase/glutaminase; KEGG: sbc:SbBS512_E3389 L-asparaginase 2; type II L-asparaginase 783035..784081 Escherichia coli DH1 12704309 YP_006090712.1 CDS EcDH1_0739 NC_017625.1 784198 785205 D PFAM: protein of unknown function DUF1202; KEGG: sbc:SbBS512_E3388 hypothetical protein; hypothetical protein 784198..785205 Escherichia coli DH1 12704310 YP_006090713.1 CDS EcDH1_0740 NC_017625.1 785360 786496 R KEGG: ssn:SSON_3109 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(785360..786496) Escherichia coli DH1 12704311 YP_006090714.1 CDS EcDH1_0741 NC_017625.1 786489 787082 R TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sbc:SbBS512_E3386 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase complement(786489..787082) Escherichia coli DH1 12704312 YP_006090715.1 CDS EcDH1_0742 NC_017625.1 787090 787380 R PFAM: protein of unknown function DUF167; KEGG: sbc:SbBS512_E3385 hypothetical protein; hypothetical protein complement(787090..787380) Escherichia coli DH1 12704313 YP_006090716.1 CDS EcDH1_0743 NC_017625.1 787377 787943 R PFAM: protein of unknown function YGGT; KEGG: sdy:SDY_3120 putative resistance protein; hypothetical protein complement(787377..787943) Escherichia coli DH1 12704314 YP_006090717.1 CDS EcDH1_0744 NC_017625.1 787961 788665 R PFAM: alanine racemase domain protein; KEGG: sdy:SDY_3122 hypothetical protein; alanine racemase complement(787961..788665) Escherichia coli DH1 12704315 YP_006090718.1 CDS EcDH1_0745 NC_017625.1 788683 789663 D KEGG: sfv:SFV_3004 putative transport protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 788683..789663 Escherichia coli DH1 12704316 YP_006090719.1 CDS EcDH1_0746 NC_017625.1 789847 790263 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: sbc:SbBS512_E3381 putative Holliday junction resolvase; Holliday junction resolvase YqgF complement(789847..790263) Escherichia coli DH1 12704317 YP_006090720.1 CDS EcDH1_0747 NC_017625.1 790263 790898 R PFAM: protein of unknown function DUF179; KEGG: sfv:SFV_3002 hypothetical protein; hypothetical protein complement(790263..790898) Escherichia coli DH1 12704318 YP_006090721.1 CDS EcDH1_0748 NC_017625.1 790935 791885 R KEGG: sbc:SbBS512_E3379 glutathione synthase; TIGRFAM: glutathione synthetase; PFAM: glutathione synthetase domain protein; glutathione synthetase ATP-binding; RimK domain protein ATP-grasp; glutathione synthetase complement(790935..791885) Escherichia coli DH1 12704319 YP_006090722.1 CDS EcDH1_0749 NC_017625.1 791898 792629 R PFAM: protein of unknown function DUF558; KEGG: sfv:SFV_3000 hypothetical protein; hypothetical protein complement(791898..792629) Escherichia coli DH1 12704320 YP_006090723.1 CDS EcDH1_0750 NC_017625.1 792709 793416 R PFAM: Endonuclease I; KEGG: sbc:SbBS512_E3377 endonuclease I; Deoxyribonuclease I complement(792709..793416) Escherichia coli DH1 12704321 YP_006090724.1 CDS EcDH1_0751 NC_017625.1 793511 794008 R PFAM: protein of unknown function DUF335 SprT; SMART: protein of unknown function SprT; KEGG: sbo:SBO_3046 hypothetical protein; hypothetical protein complement(793511..794008) Escherichia coli DH1 12704322 YP_006090725.1 CDS EcDH1_0752 NC_017625.1 794085 795479 R KEGG: sdy:SDY_3129 galactose-proton symport of transport system; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter complement(794085..795479) Escherichia coli DH1 12704323 YP_006090726.1 CDS EcDH1_0753 NC_017625.1 795903 797057 R PFAM: S-adenosylmethionine synthetase; KEGG: sdy:SDY_3130 S-adenosylmethionine synthetase; Non-specific protein-tyrosine kinase complement(795903..797057) Escherichia coli DH1 12704324 YP_006090727.1 CDS EcDH1_0754 NC_017625.1 797113 797364 D KEGG: sdy:SDY_3131 hypothetical protein; hypothetical protein 797113..797364 Escherichia coli DH1 12704325 YP_006090728.1 CDS EcDH1_0755 NC_017625.1 797361 797576 R KEGG: sbo:SBO_3049 hypothetical protein; hypothetical protein complement(797361..797576) Escherichia coli DH1 12704326 YP_006090729.1 CDS EcDH1_0756 NC_017625.1 797852 799828 D TIGRFAM: arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sdy:SDY_3134 arginine decarboxylase; arginine decarboxylase 797852..799828 Escherichia coli DH1 12704327 YP_006090730.1 CDS EcDH1_0757 NC_017625.1 799966 800886 D TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sbo:SBO_3052 agmatinase; agmatinase 799966..800886 Escherichia coli DH1 12704328 YP_006090731.1 CDS EcDH1_0758 NC_017625.1 801092 801850 R PFAM: peptidase M48 Ste24p; KEGG: sbc:SbBS512_E3369 peptidase, M48B family; peptidase M48 Ste24p complement(801092..801850) Escherichia coli DH1 12704329 YP_006090732.1 CDS EcDH1_0759 NC_017625.1 802128 804119 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sbo:SBO_3054 transketolase; transketolase 802128..804119 Escherichia coli DH1 12704330 YP_006090733.1 CDS EcDH1_0760 NC_017625.1 804433 804876 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: ssn:SSON_3088 predicted mannitol-specific enzyme IIA component of PTS; putative PTS IIA-like nitrogen-regulatory protein PtsN 804433..804876 Escherichia coli DH1 12704331 YP_006090734.1 CDS EcDH1_0761 NC_017625.1 804904 806292 D TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbc:SbBS512_E3365 PTS system, mannitol-specific cryptic EIICB component; PTS system mannitol-specific transporter subunit IIC 804904..806292 Escherichia coli DH1 12704332 YP_006090735.1 CDS EcDH1_0762 NC_017625.1 806307 807584 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfv:SFV_2983 putative oxidoreductase; alcohol dehydrogenase 806307..807584 Escherichia coli DH1 12704333 YP_006090736.1 CDS EcDH1_0763 NC_017625.1 807581 808546 D TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: sfv:SFV_2982 fructose-1,6-bisphosphatase II-like protein; fructose-1,6-bisphosphatase 807581..808546 Escherichia coli DH1 12704334 YP_006090737.1 CDS EcDH1_0764 NC_017625.1 808568 809077 D PFAM: Mannitol repressor; KEGG: sbo:SBO_3059 putative DNA-binding transcriptional regulator; mannitol repressor, MtlR 808568..809077 Escherichia coli DH1 12704335 YP_006090738.1 CDS EcDH1_0765 NC_017625.1 809074 809787 D KEGG: sbo:SBO_3060 putative fructose transport system kinase; putative fructose transport system kinase 809074..809787 Escherichia coli DH1 12704336 YP_006090739.1 CDS EcDH1_0766 NC_017625.1 810072 811091 D KEGG: sbc:SbBS512_E3352 D-erythrose-4-phosphate dehydrogenase; TIGRFAM: D-erythrose-4-phosphate dehydrogenase; PFAM: glyceraldehyde 3-phosphate dehydrogenase; D-erythrose-4-phosphate dehydrogenase 810072..811091 Escherichia coli DH1 12704337 YP_006090740.1 CDS EcDH1_0767 NC_017625.1 811141 812304 D PFAM: phosphoglycerate kinase; KEGG: sbo:SBO_3067 phosphoglycerate kinase; phosphoglycerate kinase 811141..812304 Escherichia coli DH1 12704338 YP_006090741.1 CDS EcDH1_0768 NC_017625.1 812519 813598 D KEGG: sdy:SDY_3157 fructose-bisphosphate aldolase; TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-bisphosphate aldolase 812519..813598 Escherichia coli DH1 12704339 YP_006090742.1 CDS EcDH1_0769 NC_017625.1 813956 814816 D PFAM: MscS Mechanosensitive ion channel; Conserved TM helix repeat-containing protein; KEGG: sbc:SbBS512_E3349 small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 813956..814816 Escherichia coli DH1 12704340 YP_006090743.1 CDS EcDH1_0770 NC_017625.1 814955 815590 D TIGRFAM: L-lysine exporter; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sdy:SDY_3159 arginine exporter protein; L-lysine exporter 814955..815590 Escherichia coli DH1 12704341 YP_006090744.1 CDS EcDH1_0771 NC_017625.1 815683 816423 D PFAM: protein of unknown function DUF541; KEGG: sdy:SDY_3160 hypothetical protein; hypothetical protein 815683..816423 Escherichia coli DH1 12704342 YP_006090745.1 CDS EcDH1_0772 NC_017625.1 816590 817486 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E3344 transcriptional regulator, LysR family; LysR family transcriptional regulator 816590..817486 Escherichia coli DH1 12704343 YP_006090746.1 CDS EcDH1_0773 NC_017625.1 817483 818961 R KEGG: ssn:SSON_3071 putative coenzyme A transferase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase; succinate CoA transferase complement(817483..818961) Escherichia coli DH1 12704344 YP_006090747.1 CDS EcDH1_0774 NC_017625.1 818985 819770 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sbc:SbBS512_E3341 methylmalonyl-CoA decarboxylase; Enoyl-CoA hydratase/isomerase complement(818985..819770) Escherichia coli DH1 12704345 YP_006090748.1 CDS EcDH1_0775 NC_017625.1 819781 820776 R TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: ssn:SSON_3069 arginine/ornithine transport system ATPase; LAO/AO transport system ATPase complement(819781..820776) Escherichia coli DH1 12704346 YP_006090749.1 CDS EcDH1_0776 NC_017625.1 820769 822913 R KEGG: sfv:SFV_2963 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12-binding domain protein; methylmalonyl-CoA mutase large subunit complement(820769..822913) Escherichia coli DH1 12704347 YP_006090750.1 CDS EcDH1_0777 NC_017625.1 823117 824010 R TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3165 chromosome replication initiation inhibitor protein; LysR family transcriptional regulator ArgP complement(823117..824010) Escherichia coli DH1 12704348 YP_006090751.1 CDS EcDH1_0778 NC_017625.1 824152 824382 D KEGG: cak:Caul_5119 LysR family transcriptional regulator; LysR family transcriptional regulator 824152..824382 Escherichia coli DH1 12704349 YP_006090752.1 CDS EcDH1_0779 NC_017625.1 824438 825097 D KEGG: sdy:SDY_3168 ribose-5-phosphate isomerase A; TIGRFAM: ribose 5-phosphate isomerase; PFAM: Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase 824438..825097 Escherichia coli DH1 12704350 YP_006090753.1 CDS EcDH1_0780 NC_017625.1 825353 826585 D PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbo:SBO_3080 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 825353..826585 Escherichia coli DH1 12704351 YP_006090754.1 CDS EcDH1_0781 NC_017625.1 826974 827576 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: sfv:SFV_2959 putative ligase; 5-formyltetrahydrofolate cyclo-ligase complement(826974..827576) Escherichia coli DH1 12704352 YP_006090755.1 CDS EcDH1_0782 NC_017625.1 827822 828151 R PFAM: protein of unknown function DUF710; KEGG: sbc:SbBS512_E3331 hypothetical protein; hypothetical protein complement(827822..828151) Escherichia coli DH1 12704354 YP_006090756.1 CDS EcDH1_0783 NC_017625.1 828313 828897 D TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: sfv:SFV_2957 hypothetical protein; yecA family protein 828313..828897 Escherichia coli DH1 12704355 YP_006090757.1 CDS EcDH1_0784 NC_017625.1 828923 830248 D PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: sdy:SDY_3173 proline aminopeptidase P II; peptidase M24 828923..830248 Escherichia coli DH1 12704356 YP_006090758.1 CDS EcDH1_0785 NC_017625.1 830245 831423 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E3328 2-octaprenyl-6-methoxyphenol hydroxylase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 830245..831423 Escherichia coli DH1 12704357 YP_006090759.1 CDS EcDH1_0786 NC_017625.1 831446 832648 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: ssn:SSON_3059 hypothetical protein; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase 831446..832648 Escherichia coli DH1 12704358 YP_006090760.1 CDS EcDH1_0787 NC_017625.1 833096 834190 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: sbo:SBO_3087 glycine cleavage system aminomethyltransferase T; glycine cleavage system T protein 833096..834190 Escherichia coli DH1 12704359 YP_006090761.1 CDS EcDH1_0788 NC_017625.1 834214 834603 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: set:SEN2897 glycine cleavage system H protein; glycine cleavage system H protein 834214..834603 Escherichia coli DH1 12704360 YP_006090762.1 CDS EcDH1_0789 NC_017625.1 834722 837595 D KEGG: ssn:SSON_3056 glycine dehydrogenase; TIGRFAM: glycine dehydrogenase; PFAM: glycine cleavage system P-protein; glycine dehydrogenase 834722..837595 Escherichia coli DH1 12704361 YP_006090763.1 CDS EcDH1_0790 NC_017625.1 837862 838605 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sfx:S3087 hypothetical protein; short-chain dehydrogenase/reductase SDR 837862..838605 Escherichia coli DH1 12704362 YP_006090764.1 CDS EcDH1_0791 NC_017625.1 838662 840095 R PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_3054 6-phospho-beta-glucosidase A, cryptic; glycoside hydrolase complement(838662..840095) Escherichia coli DH1 12704363 YP_006090765.1 CDS EcDH1_0792 NC_017625.1 840140 840451 D PFAM: protein of unknown function DUF437; KEGG: sdy:SDY_3181 hypothetical protein; hypothetical protein 840140..840451 Escherichia coli DH1 12704364 YP_006090766.1 CDS EcDH1_0793 NC_017625.1 840615 841274 D TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: sbc:SbBS512_E3320 channel protein, hemolysin III family; hemolysin III family channel protein 840615..841274 Escherichia coli DH1 12704365 YP_006090767.1 CDS EcDH1_0794 NC_017625.1 841470 842450 R TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sfv:SFV_2946 putative global regulator; folate-binding protein YgfZ complement(841470..842450) Escherichia coli DH1 12704366 YP_006090768.1 CDS EcDH1_0795 NC_017625.1 842693 842959 D PFAM: protein of unknown function DUF339; KEGG: sdy:SDY_3185 hypothetical protein; hypothetical protein 842693..842959 Escherichia coli DH1 12704367 YP_006090769.1 CDS EcDH1_0796 NC_017625.1 842940 843347 D PFAM: protein of unknown function DUF1434; KEGG: sbc:SbBS512_E3316 hypothetical protein; hypothetical protein 842940..843347 Escherichia coli DH1 12704368 YP_006090770.1 CDS EcDH1_0797 NC_017625.1 843387 843908 R TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_3187 flavodoxin FldB; flavodoxin complement(843387..843908) Escherichia coli DH1 12704369 YP_006090771.1 CDS EcDH1_0798 NC_017625.1 844020 844916 D TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sdy:SDY_3188 site-specific tyrosine recombinase XerD; tyrosine recombinase XerD 844020..844916 Escherichia coli DH1 12704370 YP_006090772.1 CDS EcDH1_0799 NC_017625.1 844941 845651 D PFAM: Thioredoxin, conserved site; KEGG: sfv:SFV_2941 thiol:disulfide interchange protein DsbC; thioredoxin 844941..845651 Escherichia coli DH1 12704371 YP_006090773.1 CDS EcDH1_0800 NC_017625.1 845657 847390 D TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: sbo:SBO_3100 ssDNA exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 845657..847390 Escherichia coli DH1 12704372 YP_006090774.1 CDS EcDH1_0801 NC_017625.1 847481 848579 D KEGG: sfx:S3076 peptide chain release factor 2; hypothetical protein join(847481..847555,847557..848579) Escherichia coli DH1 12704373 YP_006090775.1 CDS EcDH1_0802 NC_017625.1 848589 850106 D TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sbc:SbBS512_E3309 lysyl-tRNA synthetase LysS; lysyl-tRNA synthetase 848589..850106 Escherichia coli DH1 12704374 YP_006090776.1 CDS EcDH1_0803 NC_017625.1 850150 850698 R KEGG: sdy:SDY_3193 isopentenyl-diphosphate delta-isomerase; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1; PFAM: NUDIX hydrolase; isopentenyl-diphosphate delta-isomerase complement(850150..850698) Escherichia coli DH1 12704375 YP_006090777.1 CDS EcDH1_0804 NC_017625.1 850821 850946 R KEGG: sbc:SbBS512_E3307 hypothetical protein; hypothetical protein complement(850821..850946) Escherichia coli DH1 12704376 YP_006090778.1 CDS EcDH1_0805 NC_017625.1 850948 852396 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3041 putative permease; xanthine permease complement(850948..852396) Escherichia coli DH1 12704377 YP_006090779.1 CDS EcDH1_0806 NC_017625.1 852832 854751 D TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; FAD dependent oxidoreductase; KEGG: ssn:SSON_3039 putative oxidoreductase Fe-S binding subunit; glutamate synthase, small subunit 852832..854751 Escherichia coli DH1 12704378 YP_006090780.1 CDS EcDH1_0807 NC_017625.1 854751 855239 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ssn:SSON_3038 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin 854751..855239 Escherichia coli DH1 12704379 YP_006090781.1 CDS EcDH1_0808 NC_017625.1 855275 856642 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: spe:Spro_4431 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease complement(855275..856642) Escherichia coli DH1 12704380 YP_006090782.1 CDS EcDH1_0809 NC_017625.1 856678 857994 R TIGRFAM: guanine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: esa:ESA_pESA3p05529 guanine deaminase; guanine deaminase complement(856678..857994) Escherichia coli DH1 12704381 YP_006090783.1 CDS EcDH1_0810 NC_017625.1 858012 859412 R TIGRFAM: uracil-xanthine permease; xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: aha:AHA_2174 xanthine/uracil permease family protein; uracil-xanthine permease complement(858012..859412) Escherichia coli DH1 12704382 YP_006090784.1 CDS EcDH1_0811 NC_017625.1 859577 862447 R KEGG: ssn:SSON_3035 putative dehydrogenase; TIGRFAM: selenate reductase, molybdenum-binding subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; selenate reductase, molybdenum-binding subunit complement(859577..862447) Escherichia coli DH1 12704383 YP_006090785.1 CDS EcDH1_0812 NC_017625.1 862444 863223 R TIGRFAM: selenate reductase, FAD-binding subunit; PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: ssn:SSON_3034 hypothetical protein; selenate reductase, FAD-binding subunit complement(862444..863223) Escherichia coli DH1 12704384 YP_006090786.1 CDS EcDH1_0813 NC_017625.1 863274 864602 R TIGRFAM: selenium metabolism protein SsnA; PFAM: amidohydrolase; KEGG: ssn:SSON_3033 putative chlorohydrolase/aminohydrolase; selenium metabolism protein SsnA complement(863274..864602) Escherichia coli DH1 12704385 YP_006090787.1 CDS EcDH1_0814 NC_017625.1 864605 867703 R TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: aha:AHA_2170 putative selenate reductase subunit YgfK; selenate reductase YgfK complement(864605..867703) Escherichia coli DH1 12704386 YP_006090788.1 CDS EcDH1_0815 NC_017625.1 868025 868603 R TIGRFAM: molybdenum hydroxylase accessory protein, YgfJ family; KEGG: ssn:SSON_3028 hypothetical protein; molybdenum hydroxylase accessory protein, YgfJ family complement(868025..868603) Escherichia coli DH1 12704387 YP_006090789.1 CDS EcDH1_0816 NC_017625.1 868706 869476 D KEGG: ssn:SSON_3027 hypothetical protein; hypothetical protein 868706..869476 Escherichia coli DH1 12704388 YP_006090790.1 CDS EcDH1_0817 NC_017625.1 869524 871149 D TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family; PFAM: biotin/lipoyl attachment domain-containing protein; protein of unknown function DUF182; KEGG: sbo:SBO_3109 putative synthase; selenium-dependent molybdenum hydroxylase system protein, YqeB family 869524..871149 Escherichia coli DH1 12704389 YP_006090791.1 CDS EcDH1_0818 NC_017625.1 871370 872302 R KEGG: sbo:SBO_3110 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase complement(871370..872302) Escherichia coli DH1 12704390 YP_006090792.1 CDS EcDH1_0819 NC_017625.1 872350 873735 R KEGG: sbo:SBO_3111 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; dihydropyrimidinase complement(872350..873735) Escherichia coli DH1 12704391 YP_006090793.1 CDS EcDH1_0820 NC_017625.1 873788 874999 R TIGRFAM: M20/DapE family protein YgeY; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sbo:SBO_3112 peptidase; M20/DapE family protein YgeY complement(873788..874999) Escherichia coli DH1 12704392 YP_006090794.1 CDS EcDH1_0821 NC_017625.1 875057 876253 R TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbo:SBO_3113 diaminopropionate ammonia-lyase; diaminopropionate ammonia-lyase complement(875057..876253) Escherichia coli DH1 12704393 YP_006090795.1 CDS EcDH1_0822 NC_017625.1 876311 877498 R TIGRFAM: carbamoyltransferase YgeW; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ssn:SSON_3021 hypothetical protein; carbamoyltransferase YgeW complement(876311..877498) Escherichia coli DH1 12704394 YP_006090796.1 CDS EcDH1_0823 NC_017625.1 877977 879755 D PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: ssn:SSON_3020 putative transcriptional regulator; PAS modulated Fis family sigma-54-specific transcriptional regulator 877977..879755 Escherichia coli DH1 12704395 YP_006090797.1 CDS EcDH1_0824 NC_017625.1 879795 880274 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: sbo:SBO_3117 xanthine dehydrogenase subunit XdhC; (2Fe-2S)-binding domain-containing protein complement(879795..880274) Escherichia coli DH1 12704396 YP_006090798.1 CDS EcDH1_0825 NC_017625.1 880271 881149 R PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sfv:SFV_2932 xanthine dehydrogenase subunit XdhB; molybdopterin dehydrogenase FAD-binding protein complement(880271..881149) Escherichia coli DH1 12704397 YP_006090799.1 CDS EcDH1_0826 NC_017625.1 881160 883457 R PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: sfv:SFV_2931 xanthine dehydrogenase subunit XdhA; xanthine dehydrogenase complement(881160..883457) Escherichia coli DH1 12704398 YP_006090800.1 CDS EcDH1_0827 NC_017625.1 883872 884627 D PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: sbc:SbBS512_E3304 peptidase, M23B family; peptidase M23 883872..884627 Escherichia coli DH1 12704399 YP_006090801.1 CDS EcDH1_0828 NC_017625.1 884935 885729 D KEGG: ssn:SSON_3014 hypothetical protein; hypothetical protein 884935..885729 Escherichia coli DH1 12704401 YP_006090802.1 CDS EcDH1_0829 NC_017625.1 886163 886528 D PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 886163..886528 Escherichia coli DH1 12704402 YP_006090803.1 CDS EcDH1_0830 NC_017625.1 886486 887391 D PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 886486..887391 Escherichia coli DH1 12704403 YP_006090804.1 CDS EcDH1_0831 NC_017625.1 887743 888015 D hypothetical protein 887743..888015 Escherichia coli DH1 12704404 YP_006090805.1 CDS EcDH1_0832 NC_017625.1 888018 888449 D hypothetical protein 888018..888449 Escherichia coli DH1 12704405 YP_006090806.1 CDS EcDH1_0834 NC_017625.1 889348 889722 R PFAM: Lytic transglycosylase catalytic; KEGG: stt:t4248 hypothetical protein; lytic transglycosylase complement(889348..889722) Escherichia coli DH1 12704407 YP_006090807.1 CDS EcDH1_0835 NC_017625.1 889907 890125 R hypothetical protein complement(889907..890125) Escherichia coli DH1 12704408 YP_006090808.1 CDS EcDH1_0836 NC_017625.1 890293 891669 R PFAM: transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: cvi:CV_2640 invasion protein regulator; transcriptional regulator CadC complement(890293..891669) Escherichia coli DH1 12704409 YP_006090809.1 CDS EcDH1_0837 NC_017625.1 892004 892495 R PFAM: Tetratricopeptide TPR_3; KEGG: ssn:SSON_3011 hypothetical protein; Tetratricopeptide TPR_3 complement(892004..892495) Escherichia coli DH1 12704410 YP_006090810.1 CDS EcDH1_0838 NC_017625.1 892763 893209 R KEGG: ssn:SSON_3010 hypothetical protein; hypothetical protein complement(892763..893209) Escherichia coli DH1 12704411 YP_006090811.1 CDS EcDH1_0839 NC_017625.1 893403 893828 D KEGG: hypothetical protein; hypothetical protein 893403..893828 Escherichia coli DH1 12704412 YP_006090812.1 CDS EcDH1_0840 NC_017625.1 893819 893944 D hypothetical protein 893819..893944 Escherichia coli DH1 12704413 YP_006090813.1 CDS EcDH1_0841 NC_017625.1 893977 894459 R KEGG: ssn:SSON_3009 hypothetical protein; hypothetical protein complement(893977..894459) Escherichia coli DH1 12704414 YP_006090814.1 CDS EcDH1_0842 NC_017625.1 894452 895261 R PFAM: transcriptional regulator domain protein; KEGG: kpn:KPN_00272 putative sensory transducer; transcriptional regulator CadC complement(894452..895261) Escherichia coli DH1 12704415 YP_006090815.1 CDS EcDH1_0843 NC_017625.1 895382 895513 D hypothetical protein 895382..895513 Escherichia coli DH1 12704416 YP_006090816.1 CDS EcDH1_0844 NC_017625.1 895595 896227 R KEGG: ssn:SSON_3006 hypothetical protein; hypothetical protein complement(895595..896227) Escherichia coli DH1 12704417 YP_006090817.1 CDS EcDH1_0845 NC_017625.1 896687 897916 R TIGRFAM: serine transporter; PFAM: Amino acid transporter transmembrane; KEGG: sbc:SbBS512_E3015 serine transporter family protein; serine transporter complement(896687..897916) Escherichia coli DH1 12704418 YP_006090818.1 CDS EcDH1_0846 NC_017625.1 898171 899352 D KEGG: ssn:SSON_3004 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 898171..899352 Escherichia coli DH1 12704419 YP_006090819.1 CDS EcDH1_0847 NC_017625.1 899639 900475 D PFAM: 5-keto 4-deoxyuronate isomerase; KEGG: ssn:SSON_3003 5-keto-4-deoxyuronate isomerase; 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 899639..900475 Escherichia coli DH1 12704420 YP_006090820.1 CDS EcDH1_0848 NC_017625.1 900505 901266 D TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_2734 2-deoxy-D-gluconate 3-dehydrogenase; 2-deoxy-D-gluconate 3-dehydrogenase 900505..901266 Escherichia coli DH1 12704421 YP_006090821.1 CDS EcDH1_0849 NC_017625.1 901581 902999 D KEGG: ssn:SSON_3001 low-affinity L-arabinose transport system proton symport protein; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 901581..902999 Escherichia coli DH1 12704422 YP_006090822.1 CDS EcDH1_0850 NC_017625.1 903128 903820 D TIGRFAM: aspartate racemase; PFAM: Asp/Glu/hydantoin racemase; KEGG: sbc:SbBS512_E3023 Asp/Glu/hydantoin racemase; aspartate racemase 903128..903820 Escherichia coli DH1 12704423 YP_006090823.1 CDS EcDH1_0851 NC_017625.1 903807 904742 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_2917 DNA-binding transcriptional regulator LysR; LysR family transcriptional regulator complement(903807..904742) Escherichia coli DH1 12704424 YP_006090824.1 CDS EcDH1_0852 NC_017625.1 904864 906126 D KEGG: ssn:SSON_2998 diaminopimelate decarboxylase; TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 904864..906126 Escherichia coli DH1 12704425 YP_006090825.1 CDS EcDH1_0853 NC_017625.1 906133 907164 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_2997 DNA-binding transcriptional repressor; LacI family transcriptional regulator complement(906133..907164) Escherichia coli DH1 12704426 YP_006090826.1 CDS EcDH1_0854 NC_017625.1 907749 909908 D PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: sfv:SFV_2914 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; AMP-dependent synthetase and ligase 907749..909908 Escherichia coli DH1 12704427 YP_006090827.1 CDS EcDH1_0855 NC_017625.1 909901 911094 D PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E3027 lysophospholipid transporter; major facilitator superfamily protein 909901..911094 Escherichia coli DH1 12704428 YP_006090828.1 CDS EcDH1_0856 NC_017625.1 911126 912166 R PFAM: aldo/keto reductase; KEGG: sfv:SFV_2912 putative aldo-keto reductase; aldo/keto reductase complement(911126..912166) Escherichia coli DH1 12704429 YP_006090829.1 CDS EcDH1_0857 NC_017625.1 912274 912492 R PFAM: protein of unknown function DUF903; KEGG: sdy:SDY_3050 hypothetical protein; hypothetical protein complement(912274..912492) Escherichia coli DH1 12704430 YP_006090830.1 CDS EcDH1_0858 NC_017625.1 912630 913343 R PFAM: Integral membrane protein TerC; KEGG: sdy:SDY_3049 putative transport protein; integral membrane protein TerC complement(912630..913343) Escherichia coli DH1 12704431 YP_006090831.1 CDS EcDH1_0859 NC_017625.1 913412 914101 R TIGRFAM: DNA mismatch repair endonuclease mutH; PFAM: DNA mismatch repair protein MutH; KEGG: sdy:SDY_3048 DNA mismatch repair protein; DNA mismatch repair endonuclease mutH complement(913412..914101) Escherichia coli DH1 12704432 YP_006090832.1 CDS EcDH1_0860 NC_017625.1 914287 914433 D KEGG: stm:STM3004.1n hypothetical protein; hypothetical protein 914287..914433 Escherichia coli DH1 12704433 YP_006090833.1 CDS EcDH1_0861 NC_017625.1 914786 915316 D PFAM: NUDIX hydrolase; KEGG: sdy:SDY_3047 dinucleoside polyphosphate hydrolase; NUDIX hydrolase 914786..915316 Escherichia coli DH1 12704434 YP_006090834.1 CDS EcDH1_0862 NC_017625.1 915329 917575 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; GAF domain protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: ssn:SSON_2986 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; protein PtsP 915329..917575 Escherichia coli DH1 12704435 YP_006090835.1 CDS EcDH1_0863 NC_017625.1 917726 918601 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: sdy:SDY_3045 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 917726..918601 Escherichia coli DH1 12704436 YP_006090836.1 CDS EcDH1_0864 NC_017625.1 918608 919402 D PFAM: thymidylate synthase; KEGG: ssn:SSON_2984 thymidylate synthase; Thymidylate synthase 918608..919402 Escherichia coli DH1 12704437 YP_006090837.1 CDS EcDH1_0865 NC_017625.1 919586 920056 D KEGG: sdy:SDY_3043 hypothetical protein; hypothetical protein 919586..920056 Escherichia coli DH1 12704438 YP_006090838.1 CDS EcDH1_0866 NC_017625.1 920047 920610 D KEGG: sbc:SbBS512_E3037 prepilin peptidase dependent protein B; prepilin peptidase dependent protein B 920047..920610 Escherichia coli DH1 12704439 YP_006090839.1 CDS EcDH1_0867 NC_017625.1 920607 921014 D KEGG: sbc:SbBS512_E3038 hypothetical protein; hypothetical protein 920607..921014 Escherichia coli DH1 12704440 YP_006090840.1 CDS EcDH1_0868 NC_017625.1 920999 921322 D KEGG: sbc:SbBS512_E3039 prepilin peptidase-dependent protein C; prepilin peptidase-dependent protein C 920999..921322 Escherichia coli DH1 12704441 YP_006090841.1 CDS EcDH1_0869 NC_017625.1 921335 924703 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V RecC subunit; KEGG: ssn:SSON_2979 exonuclease V subunit gamma; exodeoxyribonuclease V subunit gamma 921335..924703 Escherichia coli DH1 12704442 YP_006090842.1 CDS EcDH1_0870 NC_017625.1 924879 927767 D PFAM: peptidase M16 domain protein; KEGG: sfv:SFV_2899 protease III; peptidase M16 domain-containing protein 924879..927767 Escherichia coli DH1 12704443 YP_006090843.1 CDS EcDH1_0871 NC_017625.1 927760 931302 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: sdy:SDY_3037 exonuclease V subunit beta; exodeoxyribonuclease V subunit beta 927760..931302 Escherichia coli DH1 12704444 YP_006090844.1 CDS EcDH1_0872 NC_017625.1 931302 933128 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: sbc:SbBS512_E3043 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 931302..933128 Escherichia coli DH1 12704445 YP_006090845.1 CDS EcDH1_0873 NC_017625.1 933190 934521 R TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; KEGG: sbo:SBO_2708 N-acetylglutamate synthase; amino-acid N-acetyltransferase complement(933190..934521) Escherichia coli DH1 12704446 YP_006090846.1 CDS EcDH1_0874 NC_017625.1 934753 936006 D PFAM: cell wall hydrolase/autolysin; KEGG: sbc:SbBS512_E3045 N-acetylmuramoyl-L-alanine amidase AmiC; N-acetylmuramoyl-L-alanine amidase 934753..936006 Escherichia coli DH1 12704447 YP_006090847.1 CDS EcDH1_0875 NC_017625.1 936585 937682 D PFAM: MltA domain protein; 3D domain protein; KEGG: ssn:SSON_2970 murein transglycosylase A; MltA domain-containing protein 936585..937682 Escherichia coli DH1 12704451 YP_006090848.1 CDS EcDH1_0876 NC_017625.1 937921 938727 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ssn:SSON_2969 putative enzyme; UBA/THIF-type NAD/FAD binding protein 937921..938727 Escherichia coli DH1 12704452 YP_006090849.1 CDS EcDH1_0877 NC_017625.1 938778 939221 R TIGRFAM: cysteine desulfurase, sulfur acceptor subunit CsdE; PFAM: Fe-S metabolism associated SufE; KEGG: sdy:SDY_3029 hypothetical protein; cysteine desulfurase, sulfur acceptor subunit CsdE complement(938778..939221) Escherichia coli DH1 12704453 YP_006090850.1 CDS EcDH1_0878 NC_017625.1 939221 940426 R TIGRFAM: cysteine desulfurase, catalytic subunit CsdA; PFAM: aminotransferase class V; KEGG: ssn:SSON_2967 cysteine sulfinate desulfinase; cysteine desulfurase, catalytic subunit CsdA complement(939221..940426) Escherichia coli DH1 12704454 YP_006090851.1 CDS EcDH1_0879 NC_017625.1 940618 940845 D PFAM: protein of unknown function DUF903; KEGG: sdy:SDY_3027 hypothetical protein; hypothetical protein 940618..940845 Escherichia coli DH1 12704455 YP_006090852.1 CDS EcDH1_0880 NC_017625.1 941196 942113 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E3062 glycine cleavage system transcriptional activator; LysR family transcriptional regulator 941196..942113 Escherichia coli DH1 12704456 YP_006090853.1 CDS EcDH1_0881 NC_017625.1 942132 942527 D PFAM: protein of unknown function DUF423; KEGG: sdy:SDY_3025 hypothetical protein; hypothetical protein 942132..942527 Escherichia coli DH1 12704457 YP_006090854.1 CDS EcDH1_0882 NC_017625.1 942520 943620 D KEGG: sbc:SbBS512_E3064 hypothetical protein; hypothetical protein 942520..943620 Escherichia coli DH1 12704458 YP_006090855.1 CDS EcDH1_0883 NC_017625.1 943664 944395 R PFAM: regulatory protein GntR HTH; regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: ssn:SSON_2962 DNA-binding transcriptional activator; DeoR family transcriptional regulator complement(943664..944395) Escherichia coli DH1 12704459 YP_006090856.1 CDS EcDH1_0884 NC_017625.1 944453 944875 R PFAM: RbsD or FucU transport; KEGG: sdy:SDY_3022 protein of fucose operon; transport protein RbsD/FucU complement(944453..944875) Escherichia coli DH1 12704460 YP_006090857.1 CDS EcDH1_0885 NC_017625.1 944877 946295 R TIGRFAM: L-fuculokinase; PFAM: carbohydrate kinase FGGY; KEGG: ssn:SSON_2960 L-fuculokinase; L-fuculokinase complement(944877..946295) Escherichia coli DH1 12704461 YP_006090858.1 CDS EcDH1_0886 NC_017625.1 946404 948179 R KEGG: sfv:SFV_2881 L-fucose isomerase; TIGRFAM: L-fucose isomerase; PFAM: L-fucose isomerase _1 domain protein; L-fucose isomerase _2 domain protein; L-fucose isomerase-like-like; L-fucose isomerase complement(946404..948179) Escherichia coli DH1 12704462 YP_006090859.1 CDS EcDH1_0887 NC_017625.1 948212 949528 R TIGRFAM: L-fucose transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_2880 L-fucose transporter; L-fucose transporter complement(948212..949528) Escherichia coli DH1 12704463 YP_006090860.1 CDS EcDH1_0888 NC_017625.1 950075 950722 D TIGRFAM: L-fuculose phosphate aldolase; PFAM: class II aldolase/adducin family protein; KEGG: sdy:SDY_3017 L-fuculose phosphate aldolase; L-fuculose phosphate aldolase 950075..950722 Escherichia coli DH1 12704464 YP_006090861.1 CDS EcDH1_0889 NC_017625.1 950750 951898 D TIGRFAM: lactaldehyde reductase; PFAM: iron-containing alcohol dehydrogenase; KEGG: ssn:SSON_2956 L-1,2-propanediol oxidoreductase; lactaldehyde reductase 950750..951898 Escherichia coli DH1 12704465 YP_006090862.1 CDS EcDH1_0890 NC_017625.1 951953 952708 R PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: sdy:SDY_3015 exonuclease IX; 5'-3' exonuclease complement(951953..952708) Escherichia coli DH1 12704466 YP_006090863.1 CDS EcDH1_0891 NC_017625.1 952820 954187 R KEGG: sbc:SbBS512_E3075 L-serine ammonia-lyase 2; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(952820..954187) Escherichia coli DH1 12704467 YP_006090864.1 CDS EcDH1_0892 NC_017625.1 954245 955534 R TIGRFAM: serine transporter; KEGG: sbo:SBO_2677 probable serine transporter; serine transporter complement(954245..955534) Escherichia coli DH1 12704468 YP_006090865.1 CDS EcDH1_0893 NC_017625.1 956091 957455 R PFAM: conserved hypothetical protein; KEGG: sbo:SBO_2676 hypothetical protein; hypothetical protein complement(956091..957455) Escherichia coli DH1 12704469 YP_006090866.1 CDS EcDH1_0894 NC_017625.1 957567 958415 R TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: sbc:SbBS512_E3078 queuine synthase; 7-cyano-7-deazaguanine reductase complement(957567..958415) Escherichia coli DH1 12704470 YP_006090867.1 CDS EcDH1_0895 NC_017625.1 958483 959028 D PFAM: Syd family protein; KEGG: sbo:SBO_2674 SecY interacting protein Syd; Syd family protein 958483..959028 Escherichia coli DH1 12704471 YP_006090868.1 CDS EcDH1_0896 NC_017625.1 959650 959979 D PFAM: protein of unknown function DUF446; KEGG: sdy:SDY_3009 hypothetical protein; hypothetical protein 959650..959979 Escherichia coli DH1 12704472 YP_006090869.1 CDS EcDH1_0897 NC_017625.1 959979 960761 D PFAM: pseudouridine synthase; KEGG: sbc:SbBS512_E3081 tRNA pseudouridine synthase C; pseudouridine synthase 959979..960761 Escherichia coli DH1 12704473 YP_006090870.1 CDS EcDH1_0898 NC_017625.1 960779 961228 D PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_3007 flavodoxin; flavodoxin/nitric oxide synthase 960779..961228 Escherichia coli DH1 12704474 YP_006090871.1 CDS EcDH1_0899 NC_017625.1 961663 963015 D TIGRFAM: d-galactonate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2946 putative transport protein; d-galactonate transporter 961663..963015 Escherichia coli DH1 12704475 YP_006090872.1 CDS EcDH1_0900 NC_017625.1 963017 964357 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: ssn:SSON_2945 putative glucarate dehydratase; mandelate racemase/muconate lactonizing protein 963017..964357 Escherichia coli DH1 12704476 YP_006090873.1 CDS EcDH1_0901 NC_017625.1 964378 965718 D KEGG: sfx:S2994 putative glucarate dehydratase; TIGRFAM: glucarate dehydratase; PFAM: Mandelate racemase/muconate lactonizing protein; glucarate dehydratase 964378..965718 Escherichia coli DH1 12704477 YP_006090874.1 CDS EcDH1_0902 NC_017625.1 965950 968706 R PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sdy:SDY_3003 hybrid sensory histidine kinase BarA; Hpt sensor hybrid histidine kinase complement(965950..968706) Escherichia coli DH1 12704478 YP_006090875.1 CDS EcDH1_0903 NC_017625.1 968763 970064 D TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sfx:S2992 23S rRNA 5-methyluridine methyltransferase; TrmA family RNA methyltransferase 968763..970064 Escherichia coli DH1 12704479 YP_006090876.1 CDS EcDH1_0904 NC_017625.1 970112 972346 D KEGG: sdy:SDY_3001 GDP/GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 970112..972346 Escherichia coli DH1 12704480 YP_006090877.1 CDS EcDH1_0905 NC_017625.1 972424 972672 D PFAM: SpoVT/AbrB domain protein; KEGG: sdy:SDY_3000 antitoxin MazE; transcriptional regulator/antitoxin MazE 972424..972672 Escherichia coli DH1 12704481 YP_006090878.1 CDS EcDH1_0906 NC_017625.1 972672 973007 D PFAM: PemK family protein; KEGG: sdy:SDY_2999 toxin ChpA; transcriptional modulator of MazE/toxin MazF 972672..973007 Escherichia coli DH1 12704482 YP_006090879.1 CDS EcDH1_0907 NC_017625.1 973078 973869 D TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sbc:SbBS512_E3092 MazG family protein; MazG family protein 973078..973869 Escherichia coli DH1 12704483 YP_006090880.1 CDS EcDH1_0908 NC_017625.1 974097 975734 D KEGG: sdy:SDY_2997 CTP synthetase; TIGRFAM: CTP synthase; PFAM: glutamine amidotransferase class-I; CTP synthase-like; CTP synthase 974097..975734 Escherichia coli DH1 12704484 YP_006090881.1 CDS EcDH1_0909 NC_017625.1 975822 977120 D PFAM: enolase; KEGG: sdy:SDY_2996 phosphopyruvate hydratase; Phosphopyruvate hydratase 975822..977120 Escherichia coli DH1 12704485 YP_006090882.1 CDS EcDH1_0910 NC_017625.1 977180 978052 R PFAM: protein of unknown function DUF477; KEGG: sfv:SFV_2677 hypothetical protein; hypothetical protein complement(977180..978052) Escherichia coli DH1 12704486 YP_006090883.1 CDS EcDH1_0911 NC_017625.1 978066 978206 R hypothetical protein complement(978066..978206) Escherichia coli DH1 12704487 YP_006090884.1 CDS EcDH1_0912 NC_017625.1 978345 979016 D KEGG: sdy:SDY_2981 hypothetical protein; hypothetical protein 978345..979016 Escherichia coli DH1 12704488 YP_006090885.1 CDS EcDH1_0913 NC_017625.1 980389 981867 R PFAM: carbohydrate kinase FGGY; KEGG: sdy:SDY_2978 putative kinase; carbohydrate kinase FGGY complement(980389..981867) Escherichia coli DH1 12704489 YP_006090886.1 CDS EcDH1_0914 NC_017625.1 981894 983171 R PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2927 putative transport protein; major facilitator superfamily protein complement(981894..983171) Escherichia coli DH1 12704490 YP_006090887.1 CDS EcDH1_0915 NC_017625.1 983490 984275 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_2976 putative oxidoreductase; short-chain dehydrogenase/reductase SDR 983490..984275 Escherichia coli DH1 12704491 YP_006090888.1 CDS EcDH1_0916 NC_017625.1 984345 985799 D PFAM: FAD linked oxidase domain protein; KEGG: cko:CKO_04128 hypothetical protein; FAD linked oxidase domain-containing protein 984345..985799 Escherichia coli DH1 12704492 YP_006090889.1 CDS EcDH1_0917 NC_017625.1 985821 987230 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_2924 putative transport protein; major facilitator superfamily protein 985821..987230 Escherichia coli DH1 12704493 YP_006090890.1 CDS EcDH1_0918 NC_017625.1 987208 987987 D PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_2923 putative transport protein; electron transfer flavoprotein subunit alpha/beta 987208..987987 Escherichia coli DH1 12704494 YP_006090891.1 CDS EcDH1_0919 NC_017625.1 987984 988844 D PFAM: Electron transfer flavoprotein alpha subunit; KEGG: ssn:SSON_2922 putative flavoprotein; electron transfer flavoprotein subunit alpha 987984..988844 Escherichia coli DH1 12704495 YP_006090892.1 CDS EcDH1_0920 NC_017625.1 988992 989567 R PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: sdy:SDY_2970 putative anti-terminator regulatory protein; glycerol-3-phosphate responsive antiterminator GlpP complement(988992..989567) Escherichia coli DH1 12704496 YP_006090893.1 CDS EcDH1_0921 NC_017625.1 989584 989844 R KEGG: sdy:SDY_2969 hypothetical protein; hypothetical protein complement(989584..989844) Escherichia coli DH1 12704497 YP_006090894.1 CDS EcDH1_0922 NC_017625.1 989835 991106 R PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: ssn:SSON_2919 hypothetical protein; electron-transferring-flavoprotein dehydrogenase complement(989835..991106) Escherichia coli DH1 12704498 YP_006090895.1 CDS EcDH1_0923 NC_017625.1 991184 991549 R KEGG: sbc:SbBS512_E3108 queuosine biosynthesis protein QueD; TIGRFAM: 6-pyruvoyl tetrahydropterin synthase; queuosine biosynthesis protein QueD; PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; 6-pyruvoyl-tetrahydropterin synthase complement(991184..991549) Escherichia coli DH1 12704499 YP_006090896.1 CDS EcDH1_0924 NC_017625.1 991865 993664 D TIGRFAM: sulfite reductase [NADPH] flavoprotein, alpha chain; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; KEGG: sbo:SBO_2647 sulfite reductase subunit alpha; sulfite reductase (NADPH) flavoprotein, alpha chain 991865..993664 Escherichia coli DH1 12704500 YP_006090897.1 CDS EcDH1_0925 NC_017625.1 993664 995376 D TIGRFAM: sulfite reductase (NADPH) hemoprotein, beta-component; PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: sbc:SbBS512_E3112 sulfite reductase (NADPH) hemoprotein, beta-component; sulfite reductase (NADPH) hemoprotein subunit beta 993664..995376 Escherichia coli DH1 12704501 YP_006090898.1 CDS EcDH1_0926 NC_017625.1 995451 996185 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: sbc:SbBS512_E3113 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 995451..996185 Escherichia coli DH1 12704502 YP_006090899.1 CDS EcDH1_0927 NC_017625.1 996544 999210 D KEGG: gsu:GSU1384 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 996544..999210 Escherichia coli DH1 12704503 YP_006090900.1 CDS EcDH1_0928 NC_017625.1 999625 1001133 D TIGRFAM: CRISPR-associated protein, Cse1 family; PFAM: CRISPR-associated protein Cse1; KEGG: gsu:GSU1385 hypothetical protein; Cse1 family CRISPR-associated protein 999625..1001133 Escherichia coli DH1 12704504 YP_006090901.1 CDS EcDH1_0929 NC_017625.1 1001126 1001608 D TIGRFAM: CRISPR-associated protein, Cse2 family; PFAM: CRISPR-associated protein Cse2; KEGG: gsu:GSU1386 hypothetical protein; Cse2 family CRISPR-associated protein 1001126..1001608 Escherichia coli DH1 12704505 YP_006090902.1 CDS EcDH1_0930 NC_017625.1 1001621 1002712 D TIGRFAM: CRISPR-associated protein, Cse4 family; PFAM: CRISPR-associated protein CT1975; KEGG: gsu:GSU1387 CRISPR-associated CSE4 family protein; CRISPR-associated protein, Cse4 family 1001621..1002712 Escherichia coli DH1 12704506 YP_006090903.1 CDS EcDH1_0931 NC_017625.1 1002715 1003389 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: gsu:GSU1388 CRISPR-associated Cas5e family protein; CRISPR-associated protein Cas5 family 1002715..1003389 Escherichia coli DH1 12704507 YP_006090904.1 CDS EcDH1_0932 NC_017625.1 1003376 1003975 D TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: sdy:SDY_2955 hypothetical protein; CRISPR-associated protein, Cse3 family 1003376..1003975 Escherichia coli DH1 12704508 YP_006090905.1 CDS EcDH1_0933 NC_017625.1 1003991 1004908 D TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: sew:SeSA_A3092 crispr-associated protein Cas1; CRISPR-associated protein Cas1 1003991..1004908 Escherichia coli DH1 12704509 YP_006090906.1 CDS EcDH1_0934 NC_017625.1 1004910 1005194 D TIGRFAM: CRISPR-associated protein Cas2; KEGG: sdy:SDY_2953 hypothetical protein; CRISPR-associated protein Cas2 1004910..1005194 Escherichia coli DH1 12704510 YP_006090907.1 CDS EcDH1_0935 NC_017625.1 1006145 1007182 R PFAM: peptidase M28; KEGG: sfx:S2969 alkaline phosphatase isozyme conversion aminopeptidase; peptidase M28 complement(1006145..1007182) Escherichia coli DH1 12704511 YP_006090908.1 CDS EcDH1_0936 NC_017625.1 1007434 1008342 D TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase; KEGG: ssn:SSON_2900 sulfate adenylyltransferase subunit 2; sulfate adenylyltransferase, small subunit 1007434..1008342 Escherichia coli DH1 12704512 YP_006090909.1 CDS EcDH1_0937 NC_017625.1 1008344 1009771 D KEGG: ssn:SSON_2899 sulfate adenylyltransferase subunit 1; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; sulfate adenylyltransferase, large subunit 1008344..1009771 Escherichia coli DH1 12704513 YP_006090910.1 CDS EcDH1_0938 NC_017625.1 1009771 1010376 D PFAM: adenylylsulfate kinase; KEGG: sdy:SDY_2949 adenylylsulfate kinase; Adenylyl-sulfate kinase 1009771..1010376 Escherichia coli DH1 12704514 YP_006090911.1 CDS EcDH1_0939 NC_017625.1 1010426 1010749 D KEGG: sdy:SDY_2948 hypothetical protein; hypothetical protein 1010426..1010749 Escherichia coli DH1 12704515 YP_006090912.1 CDS EcDH1_0940 NC_017625.1 1010943 1011254 D PFAM: Septum formation initiator; KEGG: sdy:SDY_2947 cell divison protein FtsB; septum formation initiator 1010943..1011254 Escherichia coli DH1 12704516 YP_006090913.1 CDS EcDH1_0941 NC_017625.1 1011273 1011983 D TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: sdy:SDY_2946 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1011273..1011983 Escherichia coli DH1 12704517 YP_006090914.1 CDS EcDH1_0942 NC_017625.1 1011983 1012462 D KEGG: sdy:SDY_2945 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1011983..1012462 Escherichia coli DH1 12704518 YP_006090915.1 CDS EcDH1_0943 NC_017625.1 1012459 1013508 D PFAM: tRNA pseudouridine synthase D TruD; KEGG: ssn:SSON_2893 tRNA pseudouridine synthase D; tRNA pseudouridine synthase D TruD 1012459..1013508 Escherichia coli DH1 12704519 YP_006090916.1 CDS EcDH1_0944 NC_017625.1 1013489 1014250 D KEGG: sbc:SbBS512_E3130 multifunctional protein SurE; TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; stationary-phase survival protein SurE 1013489..1014250 Escherichia coli DH1 12704520 YP_006090917.1 CDS EcDH1_0945 NC_017625.1 1014244 1014870 D KEGG: sdy:SDY_2942 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 1014244..1014870 Escherichia coli DH1 12704521 YP_006090918.1 CDS EcDH1_0946 NC_017625.1 1015010 1016149 D PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: sdy:SDY_2941 predicted outer membrane lipoprotein; peptidase M23 1015010..1016149 Escherichia coli DH1 12704522 YP_006090919.1 CDS EcDH1_0947 NC_017625.1 1016212 1017204 D TIGRFAM: RNA polymerase sigma factor RpoS; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: ssn:SSON_2889 RNA polymerase sigma factor RpoS; RpoD subfamily RNA polymerase sigma-70 subunit 1016212..1017204 Escherichia coli DH1 12704523 YP_006090920.1 CDS EcDH1_0948 NC_017625.1 1017298 1018662 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: ssn:SSON_2888 inner membrane permease YgbN; gluconate transporter complement(1017298..1018662) Escherichia coli DH1 12704524 YP_006090921.1 CDS EcDH1_0949 NC_017625.1 1018751 1019527 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sbc:SbBS512_E3135 AP endonuclease, family 2; Hydroxypyruvate isomerase complement(1018751..1019527) Escherichia coli DH1 12704525 YP_006090922.1 CDS EcDH1_0950 NC_017625.1 1019532 1020170 R PFAM: class II aldolase/adducin family protein; KEGG: sbc:SbBS512_E3136 aldolase, class II, AraD/FucA family; class II aldolase/adducin family protein complement(1019532..1020170) Escherichia coli DH1 12704526 YP_006090923.1 CDS EcDH1_0951 NC_017625.1 1020262 1021428 R PFAM: type III effector Hrp-dependent outers; KEGG: ssn:SSON_2885 hypothetical protein; Hrp-dependent type III effector protein complement(1020262..1021428) Escherichia coli DH1 12704527 YP_006090924.1 CDS EcDH1_0952 NC_017625.1 1021425 1022333 R PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E3138 NAD binding domain of 6-phosphogluconate dehydrogenase; 2-hydroxy-3-oxopropionate reductase complement(1021425..1022333) Escherichia coli DH1 12704528 YP_006090925.1 CDS EcDH1_0953 NC_017625.1 1022529 1023296 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sbo:SBO_2785 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 1022529..1023296 Escherichia coli DH1 12704529 YP_006090926.1 CDS EcDH1_0954 NC_017625.1 1023347 1024003 R PFAM: metallophosphoesterase; KEGG: sbo:SBO_2786 serine/threonine-specific protein phosphatase 2; Phosphoprotein phosphatase complement(1023347..1024003) Escherichia coli DH1 12704530 YP_006090927.1 CDS EcDH1_0955 NC_017625.1 1024109 1026670 R TIGRFAM: DNA mismatch repair protein MutS; PFAM: DNA mismatch repair protein MutS domain protein; MutS III domain protein; MutS II domain protein; MutS IV domain protein; KEGG: sbc:SbBS512_E3143 DNA mismatch repair protein MutS; DNA mismatch repair protein MutS complement(1024109..1026670) Escherichia coli DH1 12704531 YP_006090928.1 CDS EcDH1_0956 NC_017625.1 1026746 1026880 D hypothetical protein 1026746..1026880 Escherichia coli DH1 12704532 YP_006090929.1 CDS EcDH1_0957 NC_017625.1 1026957 1027310 D KEGG: sbc:SbBS512_E3145 hypothetical protein; hypothetical protein 1026957..1027310 Escherichia coli DH1 12704533 YP_006090930.1 CDS EcDH1_0958 NC_017625.1 1027347 1029425 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbo:SBO_2789 formate hydrogen-lyase transcriptional activator for FdhF, hyc and hyp operons; Fis family NifA subfamily transcriptional regulator complement(1027347..1029425) Escherichia coli DH1 12704534 YP_006090931.1 CDS EcDH1_0959 NC_017625.1 1029499 1030509 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sbc:SbBS512_E3147 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(1029499..1030509) Escherichia coli DH1 12704535 YP_006090932.1 CDS EcDH1_0960 NC_017625.1 1030506 1031627 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: sbc:SbBS512_E3148 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(1030506..1031627) Escherichia coli DH1 12704536 YP_006090933.1 CDS EcDH1_0961 NC_017625.1 1031627 1031899 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: sdy:SDY_2925 hydrogenase isoenzymes formation protein; hydrogenase assembly chaperone HypC/HupF complement(1031627..1031899) Escherichia coli DH1 12704537 YP_006090934.1 CDS EcDH1_0962 NC_017625.1 1031890 1032762 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein P47K; KEGG: sbc:SbBS512_E3150 hydrogenase isoenzymes nickel incorporation protein HypB; hydrogenase nickel incorporation protein HypB complement(1031890..1032762) Escherichia coli DH1 12704538 YP_006090935.1 CDS EcDH1_0963 NC_017625.1 1032766 1033116 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis HypA; KEGG: ssn:SSON_2873 hydrogenase nickel incorporation protein; hydrogenase nickel incorporation protein HypA complement(1032766..1033116) Escherichia coli DH1 12704539 YP_006090936.1 CDS EcDH1_0964 NC_017625.1 1033328 1033789 D KEGG: sfv:SFV_2778 formate hydrogenlyase regulatory protein HycA; formate hydrogenlyase regulatory protein HycA 1033328..1033789 Escherichia coli DH1 12704540 YP_006090937.1 CDS EcDH1_0965 NC_017625.1 1033914 1034525 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2779 small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex); 4Fe-4S ferredoxin 1033914..1034525 Escherichia coli DH1 12704541 YP_006090938.1 CDS EcDH1_0966 NC_017625.1 1034522 1036348 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2870 formate hydrogenlyase subunit 3; NADH dehydrogenase (quinone) 1034522..1036348 Escherichia coli DH1 12704542 YP_006090939.1 CDS EcDH1_0967 NC_017625.1 1036351 1037274 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sbo:SBO_2796 membrane-spanning protein of hydrogenase 3; respiratory-chain NADH dehydrogenase subunit 1 1036351..1037274 Escherichia coli DH1 12704543 YP_006090940.1 CDS EcDH1_0968 NC_017625.1 1037292 1039001 D PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sbo:SBO_2797 large subunit of hydrogenase 3; NADH dehydrogenase (ubiquinone) 30 kDa subunit 1037292..1039001 Escherichia coli DH1 12704544 YP_006090941.1 CDS EcDH1_0969 NC_017625.1 1039011 1039553 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2798 formate hydrogenlyase complex iron-sulfur subunit; 4Fe-4S ferredoxin 1039011..1039553 Escherichia coli DH1 12704545 YP_006090942.1 CDS EcDH1_0970 NC_017625.1 1039553 1040320 D PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sfv:SFV_2784 hydrogenase activity; NADH ubiquinone oxidoreductase 20 kDa subunit 1039553..1040320 Escherichia coli DH1 12704546 YP_006090943.1 CDS EcDH1_0971 NC_017625.1 1040317 1040727 D PFAM: formate hydrogenlyase maturation HycH; KEGG: sbc:SbBS512_E3158 formate hydrogenlyase maturation protein; formate hydrogenlyase maturation HycH 1040317..1040727 Escherichia coli DH1 12704547 YP_006090944.1 CDS EcDH1_0972 NC_017625.1 1040720 1041190 D TIGRFAM: hydrogenase maturation protease; hydrogenase maturation protease HycI; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sbc:SbBS512_E3159 hydrogenase maturation peptidase HycI; hydrogenase maturation protease HycI 1040720..1041190 Escherichia coli DH1 12704548 YP_006090945.1 CDS EcDH1_0973 NC_017625.1 1041349 1042773 R PFAM: glycoside hydrolase family 1; KEGG: ssn:SSON_2860 cryptic 6-phospho-beta-glucosidase; glycoside hydrolase complement(1041349..1042773) Escherichia coli DH1 12704549 YP_006090946.1 CDS EcDH1_0974 NC_017625.1 1042782 1044239 R TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_2859 cellobiose/arbutin/salicin-specific PTS system components IIBC; PTS system maltose and glucose-specific transporter subunit IIC complement(1042782..1044239) Escherichia coli DH1 12704550 YP_006090947.1 CDS EcDH1_0975 NC_017625.1 1044496 1045509 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_2858 ascBF operon repressor; LacI family transcriptional regulator 1044496..1045509 Escherichia coli DH1 12704551 YP_006090948.1 CDS EcDH1_0976 NC_017625.1 1045658 1046185 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E3164 4Fe-4S binding domain protein; 4Fe-4S ferredoxin 1045658..1046185 Escherichia coli DH1 12704552 YP_006090949.1 CDS EcDH1_0977 NC_017625.1 1046338 1048590 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC domain; zinc finger HypF domain protein; KEGG: ssn:SSON_2856 transcriptional regulatory protein; (NiFe) hydrogenase maturation protein HypF 1046338..1048590 Escherichia coli DH1 12704553 YP_006090950.1 CDS EcDH1_0978 NC_017625.1 1048718 1049851 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E3166 nitric oxide reductase FlRd-NAD(+) reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1048718..1049851) Escherichia coli DH1 12704554 YP_006090951.1 CDS EcDH1_0979 NC_017625.1 1049848 1051287 R PFAM: beta-lactamase domain protein; Rubredoxin-type Fe(Cys)4 protein; flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_2907 anaerobic nitric oxide reductase flavorubredoxin; beta-lactamase complement(1049848..1051287) Escherichia coli DH1 12704555 YP_006090952.1 CDS EcDH1_0980 NC_017625.1 1051474 1052988 D PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; SMART: AAA ATPase; KEGG: sfv:SFV_2796 anaerobic nitric oxide reductase transcription regulator; sigma-54 interacting domain-containing protein 1051474..1052988 Escherichia coli DH1 12704556 YP_006090953.1 CDS EcDH1_0981 NC_017625.1 1052985 1053950 R KEGG: sbo:SBO_2810 D-arabinose 5-phosphate isomerase; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein complement(1052985..1053950) Escherichia coli DH1 12704557 YP_006090954.1 CDS EcDH1_0982 NC_017625.1 1053943 1054716 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sfv:SFV_2798 DNA-bindng transcriptional repressor SrlR; DeoR family transcriptional regulator complement(1053943..1054716) Escherichia coli DH1 12704558 YP_006090955.1 CDS EcDH1_0983 NC_017625.1 1054783 1055142 R PFAM: Glucitol operon activator; KEGG: sbc:SbBS512_E3171 glucitol operon activator protein; glucitol operon activator complement(1054783..1055142) Escherichia coli DH1 12704559 YP_006090956.1 CDS EcDH1_0984 NC_017625.1 1055247 1056026 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_2902 sorbitol-6-phosphate dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1055247..1056026) Escherichia coli DH1 12704560 YP_006090957.1 CDS EcDH1_0985 NC_017625.1 1056030 1056401 R TIGRFAM: PTS system, glucitol/sorbitol-specific IIA subunit; PFAM: PTS system glucitol/sorbitol-specific IIA component; KEGG: sfv:SFV_2801 glucitol/sorbitol-specific PTS system component IIA; PTS system glucitol/sorbitol-specific transporter subunit IIA complement(1056030..1056401) Escherichia coli DH1 12704561 YP_006090958.1 CDS EcDH1_0986 NC_017625.1 1056412 1057371 R KEGG: sbc:SbBS512_E3174 PTS system, glucitol/sorbitol-specific, IIB component; TIGRFAM: PTS system, glucitol/sorbitol-specific, IIBC subunit; PFAM: Sorbitol phosphotransferase protein II domain protein; PTS system glucitol/sorbitol-specific transporter subunit IIBC complement(1056412..1057371) Escherichia coli DH1 12704562 YP_006090959.1 CDS EcDH1_0987 NC_017625.1 1057368 1057931 R TIGRFAM: PTS system, glucitol/sorbitol-specific, IIC subunit; PFAM: PTS system protein II sorbitol-specific factor; KEGG: sdy:SDY_2898 PTS system, glucitol/sorbitol-specific IIC component; PTS system glucitol/sorbitol-specific transporter subunit IIC complement(1057368..1057931) Escherichia coli DH1 12704563 YP_006090960.1 CDS EcDH1_0988 NC_017625.1 1058187 1059272 D TIGRFAM: lytic murein transglycosylase B; KEGG: sfv:SFV_2804 murein hydrolase B; lytic murein transglycosylase B 1058187..1059272 Escherichia coli DH1 12704564 YP_006090961.1 CDS EcDH1_0989 NC_017625.1 1059417 1059914 D PFAM: CinA domain protein; KEGG: ssn:SSON_2844 competence damage-inducible protein A; CinA domain-containing protein 1059417..1059914 Escherichia coli DH1 12704565 YP_006090962.1 CDS EcDH1_0990 NC_017625.1 1059994 1061055 D KEGG: sdy:SDY_2895 recombinase A; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1059994..1061055 Escherichia coli DH1 12704566 YP_006090963.1 CDS EcDH1_0991 NC_017625.1 1061124 1061624 D PFAM: regulatory protein RecX; KEGG: sfv:SFV_2807 recombination regulator RecX; regulatory protein RecX 1061124..1061624 Escherichia coli DH1 12704567 YP_006090964.1 CDS EcDH1_0992 NC_017625.1 1061752 1064382 D KEGG: ssn:SSON_2841 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 1061752..1064382 Escherichia coli DH1 12704568 YP_006090965.1 CDS EcDH1_0993 NC_017625.1 1064617 1064802 D PFAM: carbon storage regulator; KEGG: kpe:KPK_1099 carbon storage regulator; carbon storage regulator CsrA 1064617..1064802 Escherichia coli DH1 12704569 YP_006090966.1 CDS EcDH1_0994 NC_017625.1 1066260 1066826 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_2834 predicted hydrolase; beta-phosphoglucomutase family hydrolase 1066260..1066826 Escherichia coli DH1 12704575 YP_006090967.1 CDS EcDH1_0995 NC_017625.1 1066823 1067251 D KEGG: sfv:SFV_2815 hypothetical protein; hypothetical protein 1066823..1067251 Escherichia coli DH1 12704576 YP_006090968.1 CDS EcDH1_0996 NC_017625.1 1067324 1068880 D KEGG: sdy:SDY_2885 glutamate--cysteine ligase; TIGRFAM: glutamate/cysteine ligase; PFAM: glutamate--cysteine ligase; glutamate/cysteine ligase 1067324..1068880 Escherichia coli DH1 12704577 YP_006090969.1 CDS EcDH1_0998 NC_017625.1 1069608 1071146 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2830 probably membrane translocase; EmrB/QacA subfamily drug resistance transporter complement(1069608..1071146) Escherichia coli DH1 12704579 YP_006090970.1 CDS EcDH1_0999 NC_017625.1 1071163 1072335 R TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: sbo:SBO_2832 multidrug resistance secretion protein; efflux pump membrane protein complement(1071163..1072335) Escherichia coli DH1 12704580 YP_006090971.1 CDS EcDH1_1000 NC_017625.1 1072462 1072992 R PFAM: regulatory protein MarR; KEGG: sbc:SbBS512_E3192 transcriptional repressor MprA; MarR family transcriptional regulator complement(1072462..1072992) Escherichia coli DH1 12704581 YP_006090972.1 CDS EcDH1_1001 NC_017625.1 1073083 1073418 R KEGG: sbc:SbBS512_E3193 hypothetical protein; hypothetical protein complement(1073083..1073418) Escherichia coli DH1 12704582 YP_006090973.1 CDS EcDH1_1002 NC_017625.1 1073408 1074145 R PFAM: AzlC family protein; KEGG: ssn:SSON_2826 hypothetical protein; AzlC family protein complement(1073408..1074145) Escherichia coli DH1 12704583 YP_006090974.1 CDS EcDH1_1004 NC_017625.1 1075638 1076630 R PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sbc:SbBS512_E3200 glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein; glycine betaine ABC transporter substrate-binding protein complement(1075638..1076630) Escherichia coli DH1 12704585 YP_006090975.1 CDS EcDH1_1005 NC_017625.1 1076688 1077752 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_2823 glycine betaine transporter membrane protein; binding-protein-dependent transport system inner membrane protein complement(1076688..1077752) Escherichia coli DH1 12704586 YP_006090976.1 CDS EcDH1_1006 NC_017625.1 1077745 1078947 R KEGG: sbc:SbBS512_E3202 glycine betaine/L-proline ABC transporter, ATP binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase complement(1077745..1078947) Escherichia coli DH1 12704587 YP_006090977.1 CDS EcDH1_1007 NC_017625.1 1079301 1080260 R PFAM: ribonucleotide reductase; KEGG: ssn:SSON_2821 ribonucleotide-diphosphate reductase subunit beta; ribonucleoside-diphosphate reductase complement(1079301..1080260) Escherichia coli DH1 12704588 YP_006090978.1 CDS EcDH1_1008 NC_017625.1 1080270 1082375 R KEGG: sbc:SbBS512_E3204 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit domain protein; Ribonucleotide reductase domain protein; ribonucleoside-diphosphate reductase subunit alpha complement(1080270..1082375) Escherichia coli DH1 12704589 YP_006090979.1 CDS EcDH1_1009 NC_017625.1 1082387 1082797 R TIGRFAM: NrdI protein; PFAM: NrdI family protein; KEGG: sbc:SbBS512_E3205 NrdI protein; NrdI protein complement(1082387..1082797) Escherichia coli DH1 12704590 YP_006090980.1 CDS EcDH1_1010 NC_017625.1 1082794 1083039 R TIGRFAM: glutaredoxin-like protein NrdH; PFAM: glutaredoxin; KEGG: sbo:SBO_2844 glutaredoxin-like protein; glutaredoxin-like protein NrdH complement(1082794..1083039) Escherichia coli DH1 12704591 YP_006090981.1 CDS EcDH1_1011 NC_017625.1 1083287 1083616 R PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2863 hypothetical protein; hypothetical protein complement(1083287..1083616) Escherichia coli DH1 12704592 YP_006090982.1 CDS EcDH1_1012 NC_017625.1 1083768 1084112 D KEGG: sbc:SbBS512_E3210 hypothetical protein; hypothetical protein 1083768..1084112 Escherichia coli DH1 12704593 YP_006090983.1 CDS EcDH1_1013 NC_017625.1 1084149 1084598 R PFAM: protein of unknown function DUF1144; KEGG: sbc:SbBS512_E3211 hypothetical protein; hypothetical protein complement(1084149..1084598) Escherichia coli DH1 12704594 YP_006090984.1 CDS EcDH1_1014 NC_017625.1 1085267 1085671 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sdy:SDY_2859 DNA binding protein, nucleoid-associated; histone family protein nucleoid-structuring protein H-NS 1085267..1085671 Escherichia coli DH1 12704595 YP_006090985.1 CDS EcDH1_1015 NC_017625.1 1085718 1086242 R SMART: Rhodanese domain protein; KEGG: sbc:SbBS512_E3213 putative inner membrane protein; Rhodanese domain-containing protein complement(1085718..1086242) Escherichia coli DH1 12704596 YP_006090986.1 CDS EcDH1_1016 NC_017625.1 1086252 1086551 R PFAM: regulatory protein ArsR; KEGG: sbo:SBO_2852 hypothetical protein; ArsR family transcriptional regulator complement(1086252..1086551) Escherichia coli DH1 12704597 YP_006090987.1 CDS EcDH1_1017 NC_017625.1 1086734 1086892 D PFAM: protein of unknown function UPF0057; KEGG: sdy:SDY_2856 hypothetical protein; hypothetical protein 1086734..1086892 Escherichia coli DH1 12704598 YP_006090988.1 CDS EcDH1_1018 NC_017625.1 1086976 1087425 D PFAM: Peptidoglycan-binding LysM; transport-associated; SMART: Transport-associated and nodulation region; KEGG: sdy:SDY_2855 hypothetical protein; Peptidoglycan-binding LysM 1086976..1087425 Escherichia coli DH1 12704599 YP_006090989.1 CDS EcDH1_1019 NC_017625.1 1087426 1088088 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sdy:SDY_2854 DNA-binding transcriptional regulator CsiR; GntR family transcriptional regulator complement(1087426..1088088) Escherichia coli DH1 12704600 YP_006090990.1 CDS EcDH1_1020 NC_017625.1 1088109 1089509 R TIGRFAM: GABA permease; PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2853 gamma-aminobutyrate transporter; GABA permease complement(1088109..1089509) Escherichia coli DH1 12704601 YP_006090991.1 CDS EcDH1_1021 NC_017625.1 1089747 1091027 R TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: ssn:SSON_2806 4-aminobutyrate aminotransferase; 4-aminobutyrate aminotransferase complement(1089747..1091027) Escherichia coli DH1 12704602 YP_006090992.1 CDS EcDH1_1022 NC_017625.1 1091041 1092489 R TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ssn:SSON_2805 succinate-semialdehyde dehydrogenase I; succinate-semialdehyde dehydrogenase complement(1091041..1092489) Escherichia coli DH1 12704603 YP_006090993.1 CDS EcDH1_1023 NC_017625.1 1092512 1093780 R PFAM: FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E3221 FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(1092512..1093780) Escherichia coli DH1 12704604 YP_006090994.1 CDS EcDH1_1024 NC_017625.1 1093800 1094777 R PFAM: Protein of unknown function CsiD; KEGG: ssn:SSON_2803 hypothetical protein; hypothetical protein complement(1093800..1094777) Escherichia coli DH1 12704605 YP_006090995.1 CDS EcDH1_1028 NC_017625.1 1101036 1105616 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sdy:SDY_1204 putative ATP-binding component of a transport system; outer membrane autotransporter barrel domain-containing protein 1101036..1105616 Escherichia coli DH1 12704609 YP_006090996.1 CDS EcDH1_1029 NC_017625.1 1105980 1106309 R PFAM: protein of unknown function DUF1219; KEGG: eca:ECA2853 hypothetical protein; hypothetical protein complement(1105980..1106309) Escherichia coli DH1 12704610 YP_006090997.1 CDS EcDH1_1030 NC_017625.1 1106330 1106647 R PFAM: YagBYeeUYfjZ family protein; KEGG: plu:plu0134 hypothetical protein; YagBYeeUYfjZ family protein complement(1106330..1106647) Escherichia coli DH1 12704611 YP_006090998.1 CDS EcDH1_1031 NC_017625.1 1106685 1106885 R PFAM: protein of unknown function DUF987; KEGG: seg:SG0269 hypothetical protein; hypothetical protein complement(1106685..1106885) Escherichia coli DH1 12704612 YP_006090999.1 CDS EcDH1_1032 NC_017625.1 1106894 1107376 R PFAM: DNA repair protein RadC; KEGG: seh:SeHA_C4680 DNA repair protein, RADC family; DNA repair protein RadC complement(1106894..1107376) Escherichia coli DH1 12704613 YP_006091000.1 CDS EcDH1_1033 NC_017625.1 1107385 1107843 R PFAM: Antirestriction protein; KEGG: seh:SeHA_C4681 antirestriction protein; antirestriction protein complement(1107385..1107843) Escherichia coli DH1 12704614 YP_006091001.1 CDS EcDH1_1035 NC_017625.1 1108741 1110444 R KEGG: msu:MS0518 CcmC protein; hypothetical protein complement(1108741..1110444) Escherichia coli DH1 12704616 YP_006091002.1 CDS EcDH1_1037 NC_017625.1 1111608 1111922 D KEGG: ent:Ent638_4257 arsenate reductase; glutaredoxin family-like arsenate reductase 1111608..1111922 Escherichia coli DH1 12704618 YP_006091003.1 CDS EcDH1_1038 NC_017625.1 1112147 1112614 R KEGG: kpe:KPK_4947 hypothetical protein; hypothetical protein complement(1112147..1112614) Escherichia coli DH1 12704619 YP_006091004.1 CDS EcDH1_1039 NC_017625.1 1112638 1113081 R KEGG: seg:SG0280 hypothetical protein; hypothetical protein complement(1112638..1113081) Escherichia coli DH1 12704620 YP_006091005.1 CDS EcDH1_1040 NC_017625.1 1113081 1113317 R hypothetical protein complement(1113081..1113317) Escherichia coli DH1 12704621 YP_006091006.1 CDS EcDH1_1041 NC_017625.1 1113358 1114059 R KEGG: kpe:KPK_4949 putative transcriptional regulator; putative transcriptional regulator complement(1113358..1114059) Escherichia coli DH1 12704622 YP_006091007.1 CDS EcDH1_1042 NC_017625.1 1114276 1115097 R PFAM: protein of unknown function DUF932; KEGG: ypy:YPK_3134 hypothetical protein; hypothetical protein complement(1114276..1115097) Escherichia coli DH1 12704623 YP_006091008.1 CDS EcDH1_1043 NC_017625.1 1115189 1116052 R PFAM: GTP-binding protein HSR1-related; KEGG: spq:SPAB_03326 hypothetical protein; GTP-binding protein HSR1-like protein complement(1115189..1116052) Escherichia coli DH1 12704624 YP_006091009.1 CDS EcDH1_1044 NC_017625.1 1116407 1116778 R KEGG: spl:Spea_1277 hypothetical protein; hypothetical protein complement(1116407..1116778) Escherichia coli DH1 12704625 YP_006091010.1 CDS EcDH1_1045 NC_017625.1 1116771 1117844 R KEGG: spl:Spea_1276 hypothetical protein; hypothetical protein complement(1116771..1117844) Escherichia coli DH1 12704626 YP_006091011.1 CDS EcDH1_1047 NC_017625.1 1118609 1120225 D PFAM: Domain of unknown function DUF1837; KEGG: she:Shewmr4_3327 hypothetical protein; hypothetical protein 1118609..1120225 Escherichia coli DH1 12704628 YP_006091012.1 CDS EcDH1_1048 NC_017625.1 1120222 1122411 D PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: she:Shewmr4_3328 DEAD/DEAH box helicase domain-containing protein; helicase domain-containing protein 1120222..1122411 Escherichia coli DH1 12704629 YP_006091013.1 CDS EcDH1_1049 NC_017625.1 1122589 1123215 R KEGG: shm:Shewmr7_1767 hypothetical protein; hypothetical protein complement(1122589..1123215) Escherichia coli DH1 12704630 YP_006091014.1 CDS EcDH1_1050 NC_017625.1 1123368 1124777 R KEGG: spe:Spro_1780 hypothetical protein; hypothetical protein complement(1123368..1124777) Escherichia coli DH1 12704631 YP_006091015.1 CDS EcDH1_1051 NC_017625.1 1124906 1125118 R PFAM: Prophage CP4-57 regulatory; KEGG: ypb:YPTS_1206 phage transcriptional regulator, AlpA; phage transcriptional regulator AlpA complement(1124906..1125118) Escherichia coli DH1 12704632 YP_006091016.1 CDS EcDH1_1052 NC_017625.1 1125162 1126118 D KEGG: ypb:YPTS_1205 hypothetical protein; hypothetical protein 1125162..1126118 Escherichia coli DH1 12704633 YP_006091017.1 CDS EcDH1_1053 NC_017625.1 1126362 1127603 R PFAM: integrase family protein; KEGG: ypb:YPTS_1211 integrase family protein; integrase family protein complement(1126362..1127603) Escherichia coli DH1 12704634 YP_006091018.1 CDS EcDH1_1055 NC_017625.1 1128384 1128866 R TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: sdy:SDY_2793 SsrA-binding protein; SsrA-binding protein complement(1128384..1128866) Escherichia coli DH1 12704636 YP_006091019.1 CDS EcDH1_1056 NC_017625.1 1128998 1129474 D PFAM: cyclase/dehydrase; KEGG: sdy:SDY_2792 hypothetical protein; cyclase/dehydrase 1128998..1129474 Escherichia coli DH1 12704637 YP_006091020.1 CDS EcDH1_1057 NC_017625.1 1129464 1129754 D PFAM: protein of unknown function UPF0125; KEGG: sbc:SbBS512_E3007 RnfH family protein; hypothetical protein 1129464..1129754 Escherichia coli DH1 12704638 YP_006091021.1 CDS EcDH1_1058 NC_017625.1 1129816 1130157 R PFAM: SmpA/OmlA domain protein; KEGG: sdy:SDY_2790 hypothetical protein; SmpA/OmlA domain-containing protein complement(1129816..1130157) Escherichia coli DH1 12704639 YP_006091022.1 CDS EcDH1_1059 NC_017625.1 1130306 1131967 R TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: ssn:SSON_2772 recombination and repair protein; DNA repair protein RecN complement(1130306..1131967) Escherichia coli DH1 12704640 YP_006091023.1 CDS EcDH1_1060 NC_017625.1 1132053 1132931 R PFAM: ATP-NAD/AcoX kinase; KEGG: sbc:SbBS512_E3004 NAD(+) kinase; ATP-NAD/AcoX kinase complement(1132053..1132931) Escherichia coli DH1 12704641 YP_006091024.1 CDS EcDH1_1061 NC_017625.1 1133054 1133647 D PFAM: GrpE protein; KEGG: sdy:SDY_2787 heat shock protein GrpE; Ribulose-phosphate 3-epimerase 1133054..1133647 Escherichia coli DH1 12704642 YP_006091025.1 CDS EcDH1_1062 NC_017625.1 1133702 1134943 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sbc:SbBS512_E3001 CBS/transporter associated domain protein; hypothetical protein complement(1133702..1134943) Escherichia coli DH1 12704643 YP_006091026.1 CDS EcDH1_1063 NC_017625.1 1135009 1135875 R PFAM: cytochrome c assembly protein; KEGG: sdy:SDY_2785 hypothetical protein; cytochrome c assembly protein complement(1135009..1135875) Escherichia coli DH1 12704644 YP_006091027.1 CDS EcDH1_1064 NC_017625.1 1135967 1137328 D KEGG: sbc:SbBS512_E2999 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1135967..1137328 Escherichia coli DH1 12704645 YP_006091028.1 CDS EcDH1_1065 NC_017625.1 1137577 1137825 D PFAM: ribosomal protein S16; KEGG: sdy:SDY_2783 30S ribosomal protein S16; 30S ribosomal protein S16 1137577..1137825 Escherichia coli DH1 12704646 YP_006091029.1 CDS EcDH1_1066 NC_017625.1 1137844 1138392 D TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: sdy:SDY_2782 16S rRNA-processing protein; 16S rRNA processing protein RimM 1137844..1138392 Escherichia coli DH1 12704647 YP_006091030.1 CDS EcDH1_1067 NC_017625.1 1138423 1139190 D KEGG: sdy:SDY_2781 tRNA (guanine-N(1)-)-methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase 1138423..1139190 Escherichia coli DH1 12704648 YP_006091031.1 CDS EcDH1_1068 NC_017625.1 1139232 1139579 D PFAM: ribosomal protein L19; KEGG: sdy:SDY_2780 50S ribosomal protein L19; 50S ribosomal protein L19 1139232..1139579 Escherichia coli DH1 12704649 YP_006091032.1 CDS EcDH1_1069 NC_017625.1 1139655 1140137 R PFAM: OmpA/MotB domain protein; KEGG: sbo:SBO_2741 predicted outer membrane lipoprotein; OmpA/MotB domain-containing protein complement(1139655..1140137) Escherichia coli DH1 12704650 YP_006091033.1 CDS EcDH1_1070 NC_017625.1 1140153 1141376 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_2761 hypothetical protein; diguanylate cyclase complement(1140153..1141376) Escherichia coli DH1 12704651 YP_006091034.1 CDS EcDH1_1071 NC_017625.1 1141369 1141887 R KEGG: sbc:SbBS512_E2990 hypothetical protein; hypothetical protein complement(1141369..1141887) Escherichia coli DH1 12704652 YP_006091035.1 CDS EcDH1_1072 NC_017625.1 1142037 1142402 R KEGG: sfv:SFV_2869 hypothetical protein; hypothetical protein complement(1142037..1142402) Escherichia coli DH1 12704653 YP_006091036.1 CDS EcDH1_1073 NC_017625.1 1142612 1143682 D KEGG: sdy:SDY_2765 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 1142612..1143682 Escherichia coli DH1 12704654 YP_006091037.1 CDS EcDH1_1074 NC_017625.1 1143693 1144814 D TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; Prephenate dehydrogenase; KEGG: sbc:SbBS512_E2987 T-protein; chorismate mutase 1143693..1144814 Escherichia coli DH1 12704655 YP_006091038.1 CDS EcDH1_1075 NC_017625.1 1144857 1146017 R TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; KEGG: sfv:SFV_2872 bifunctional chorismate mutase/prephenate dehydratase; chorismate mutase complement(1144857..1146017) Escherichia coli DH1 12704656 YP_006091039.1 CDS EcDH1_1076 NC_017625.1 1146267 1146608 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: sdy:SDY_2768 translation inhibitor protein RaiA; sigma 54 modulation protein/ribosomal protein S30EA complement(1146267..1146608) Escherichia coli DH1 12704657 YP_006091040.1 CDS EcDH1_1077 NC_017625.1 1146879 1147616 R TIGRFAM: outer membrane assembly lipoprotein YfiO; KEGG: sbc:SbBS512_E2976 outer membrane assembly lipoprotein YfiO; outer membrane assembly lipoprotein YfiO complement(1146879..1147616) Escherichia coli DH1 12704658 YP_006091041.1 CDS EcDH1_1078 NC_017625.1 1147751 1148731 D KEGG: ssn:SSON_2720 23S rRNA pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1147751..1148731 Escherichia coli DH1 12704659 YP_006091042.1 CDS EcDH1_1079 NC_017625.1 1148728 1149459 D PFAM: protein of unknown function DUF152; KEGG: ssn:SSON_2719 hypothetical protein; hypothetical protein 1148728..1149459 Escherichia coli DH1 12704660 YP_006091043.1 CDS EcDH1_1080 NC_017625.1 1149589 1152162 D KEGG: sbo:SBO_2627 protein disaggregation chaperone; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 1149589..1152162 Escherichia coli DH1 12704661 YP_006091044.1 CDS EcDH1_1081 NC_017625.1 1158016 1159314 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_2830 alpha-ketoglutarate transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) 1158016..1159314 Escherichia coli DH1 12704666 YP_006091045.1 CDS EcDH1_1082 NC_017625.1 1159311 1159583 R KEGG: sbc:SbBS512_E2949 putative lipoprotein; putative lipoprotein complement(1159311..1159583) Escherichia coli DH1 12704667 YP_006091046.1 CDS EcDH1_1083 NC_017625.1 1159680 1161035 R PFAM: phospholipase D/Transphosphatidylase; KEGG: sdy:SDY_2828 phosphatidylserine synthase; phospholipase D/Transphosphatidylase complement(1159680..1161035) Escherichia coli DH1 12704668 YP_006091047.1 CDS EcDH1_1084 NC_017625.1 1161149 1163809 R PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: sbc:SbBS512_E2952 acetyltransferase, GNAT family protein; N-acetyltransferase GCN5 complement(1161149..1163809) Escherichia coli DH1 12704669 YP_006091048.1 CDS EcDH1_1085 NC_017625.1 1163841 1164539 R PFAM: DTW domain containing protein; KEGG: sdy:SDY_2826 hypothetical protein; DTW domain containing protein complement(1163841..1164539) Escherichia coli DH1 12704670 YP_006091049.1 CDS EcDH1_1086 NC_017625.1 1164608 1165027 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: sdy:SDY_2825 thioredoxin 2; thioredoxin complement(1164608..1165027) Escherichia coli DH1 12704671 YP_006091050.1 CDS EcDH1_1087 NC_017625.1 1165234 1166271 D PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sdy:SDY_2824 predicted methyltransferase; tRNA/rRNA methyltransferase SpoU 1165234..1166271 Escherichia coli DH1 12704672 YP_006091051.1 CDS EcDH1_1088 NC_017625.1 1166319 1167008 R TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: sbc:SbBS512_E2956 uracil-DNA glycosylase; uracil-DNA glycosylase complement(1166319..1167008) Escherichia coli DH1 12704673 YP_006091052.1 CDS EcDH1_1089 NC_017625.1 1167313 1167696 D PFAM: formate C-acetyltransferase glycine radical; KEGG: sbc:SbBS512_E2957 autonomous glycyl radical cofactor; formate C-acetyltransferase glycine radical 1167313..1167696 Escherichia coli DH1 12704674 YP_006091053.1 CDS EcDH1_1090 NC_017625.1 1167752 1168339 R PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E2958 translocator protein, LysE family; lysine exporter protein LysE/YggA complement(1167752..1168339) Escherichia coli DH1 12704675 YP_006091054.1 CDS EcDH1_1091 NC_017625.1 1168442 1169323 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2703 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 1168442..1169323 Escherichia coli DH1 12704676 YP_006091055.1 CDS EcDH1_1092 NC_017625.1 1169532 1170866 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ssn:SSON_2702 ATP-dependent RNA helicase SrmB; DEAD/DEAH box helicase complement(1169532..1170866) Escherichia coli DH1 12704677 YP_006091056.1 CDS EcDH1_1093 NC_017625.1 1170998 1171735 D PFAM: methyltransferase small; KEGG: sfv:SFV_2638 putative enzyme; methyltransferase small 1170998..1171735 Escherichia coli DH1 12704678 YP_006091057.1 CDS EcDH1_1094 NC_017625.1 1171720 1173342 R KEGG: sdy:SDY_2815 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; L-aspartate oxidase complement(1171720..1173342) Escherichia coli DH1 12704679 YP_006091058.1 CDS EcDH1_1095 NC_017625.1 1173750 1174325 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: sdy:SDY_2814 RNA polymerase sigma factor RpoE; ECF subfamily RNA polymerase sigma-24 subunit 1173750..1174325 Escherichia coli DH1 12704680 YP_006091059.1 CDS EcDH1_1096 NC_017625.1 1174358 1175008 D PFAM: Anti sigma-E protein RseA family protein; Anti sigma-E protein RseA domain protein; KEGG: sdy:SDY_2813 anti-RNA polymerase sigma factor SigE; anti sigma-E protein, RseA 1174358..1175008 Escherichia coli DH1 12704681 YP_006091060.1 CDS EcDH1_1097 NC_017625.1 1175008 1175964 D PFAM: MucB/RseB family protein; KEGG: sdy:SDY_2812 periplasmic negative regulator of sigmaE; sigma E regulatory protein MucB/RseB 1175008..1175964 Escherichia coli DH1 12704682 YP_006091061.1 CDS EcDH1_1098 NC_017625.1 1175961 1176440 D PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: sbc:SbBS512_E2935 sigma-E factor regulatory protein RseC; sigma E positive regulator RseC/MucC 1175961..1176440 Escherichia coli DH1 12704683 YP_006091062.1 CDS EcDH1_1099 NC_017625.1 1176638 1178437 D TIGRFAM: small GTP-binding protein; GTP-binding protein LepA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; GTP-binding protein LepA domain protein; KEGG: sbc:SbBS512_E2934 GTP-binding protein LepA; GTP-binding protein LepA 1176638..1178437 Escherichia coli DH1 12704684 YP_006091063.1 CDS EcDH1_1100 NC_017625.1 1178453 1179427 D KEGG: sbc:SbBS512_E2933 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; signal peptidase I 1178453..1179427 Escherichia coli DH1 12704685 YP_006091064.1 CDS EcDH1_1101 NC_017625.1 1179699 1180379 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; KEGG: sdy:SDY_2808 ribonuclease III; Ribonuclease III 1179699..1180379 Escherichia coli DH1 12704686 YP_006091065.1 CDS EcDH1_1102 NC_017625.1 1180376 1181281 D TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: sbc:SbBS512_E2931 GTP-binding protein Era; GTP-binding protein Era 1180376..1181281 Escherichia coli DH1 12704687 YP_006091066.1 CDS EcDH1_1103 NC_017625.1 1181293 1182021 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: sdy:SDY_2806 DNA repair protein RecO; DNA repair protein RecO 1181293..1182021 Escherichia coli DH1 12704688 YP_006091067.1 CDS EcDH1_1104 NC_017625.1 1182033 1182764 D TIGRFAM: pyridoxal phosphate biosynthetic protein PdxJ; PFAM: Pyridoxal phosphate biosynthetic protein PdxJ; KEGG: sdy:SDY_2805 pyridoxal phosphate biosynthetic protein PdxJ; pyridoxal phosphate biosynthetic protein PdxJ 1182033..1182764 Escherichia coli DH1 12704689 YP_006091068.1 CDS EcDH1_1105 NC_017625.1 1182764 1183144 D KEGG: sbc:SbBS512_E2928 holo-(acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 1182764..1183144 Escherichia coli DH1 12704690 YP_006091069.1 CDS EcDH1_1106 NC_017625.1 1183839 1184099 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2927 4Fe-4S binding domain protein; 4Fe-4S ferredoxin complement(1183839..1184099) Escherichia coli DH1 12704691 YP_006091070.1 CDS EcDH1_1107 NC_017625.1 1184155 1185003 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2926 transcriptional regulator, RpiR family; RpiR family transcriptional regulator complement(1184155..1185003) Escherichia coli DH1 12704692 YP_006091071.1 CDS EcDH1_1108 NC_017625.1 1185212 1185847 D TIGRFAM: HAD superfamily (subfamily IF) hydrolase, YfhB; KEGG: sbc:SbBS512_E2925 HAD hydrolase YhfB; HAD superfamily hydrolase 1185212..1185847 Escherichia coli DH1 12704693 YP_006091072.1 CDS EcDH1_1109 NC_017625.1 1185905 1186408 D PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sbc:SbBS512_E2923 tRNA-specific adenosine deaminase; CMP/dCMP deaminase zinc-binding protein 1185905..1186408 Escherichia coli DH1 12704694 YP_006091073.1 CDS EcDH1_1110 NC_017625.1 1186405 1187961 R PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; KEGG: sbc:SbBS512_E2924 putative transglycosylase; lytic transglycosylase complement(1186405..1187961) Escherichia coli DH1 12704695 YP_006091074.1 CDS EcDH1_1111 NC_017625.1 1188219 1192106 D KEGG: ssn:SSON_2640 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase 1188219..1192106 Escherichia coli DH1 12704696 YP_006091075.1 CDS EcDH1_1112 NC_017625.1 1192709 1194091 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_2746 putative 2-component sensor protein; histidine kinase 1192709..1194091 Escherichia coli DH1 12704697 YP_006091076.1 CDS EcDH1_1113 NC_017625.1 1194256 1194969 D KEGG: sbc:SbBS512_E2920 putative lipoprotein; putative lipoprotein 1194256..1194969 Escherichia coli DH1 12704698 YP_006091077.1 CDS EcDH1_1114 NC_017625.1 1194959 1196293 D PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2919 sigma-54 dependent response regulator; putative two component, sigma54 specific, transcriptional regulator, Fis family 1194959..1196293 Escherichia coli DH1 12704699 YP_006091078.1 CDS EcDH1_1115 NC_017625.1 1196354 1196692 D PFAM: nitrogen regulatory protein P-II; KEGG: sdy:SDY_2743 regulatory protein P-II for glutamine synthetase; nitrogen regulatory protein P-II 1196354..1196692 Escherichia coli DH1 12704700 YP_006091079.1 CDS EcDH1_1116 NC_017625.1 1196737 1197927 R PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sbc:SbBS512_E2917 flavohemoprotein; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(1196737..1197927) Escherichia coli DH1 12704701 YP_006091080.1 CDS EcDH1_1117 NC_017625.1 1198255 1199508 D PFAM: Orn/Lys/Arg decarboxylase major region; glycine hydroxymethyltransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbc:SbBS512_E2916 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 1198255..1199508 Escherichia coli DH1 12704702 YP_006091081.1 CDS EcDH1_1118 NC_017625.1 1199706 1200899 R PFAM: ROK family protein; KEGG: sbo:SBO_2578 putative NAGC-like transcriptional regulator; ROK family protein complement(1199706..1200899) Escherichia coli DH1 12704703 YP_006091082.1 CDS EcDH1_1119 NC_017625.1 1201017 1204298 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sbo:SBO_2577 hypothetical protein; hypothetical protein 1201017..1204298 Escherichia coli DH1 12704704 YP_006091083.1 CDS EcDH1_1120 NC_017625.1 1204395 1205378 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sfv:SFV_2596 putative LacI-type transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1204395..1205378 Escherichia coli DH1 12704705 YP_006091084.1 CDS EcDH1_1121 NC_017625.1 1205401 1206912 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_2573 putative ATP-binding component of a transport system; ABC transporter 1205401..1206912 Escherichia coli DH1 12704706 YP_006091085.1 CDS EcDH1_1122 NC_017625.1 1206937 1207935 D PFAM: inner-membrane translocator; KEGG: ssn:SSON_2629 putative transport system permease protein; monosaccharide-transporting ATPase 1206937..1207935 Escherichia coli DH1 12704707 YP_006091086.1 CDS EcDH1_1123 NC_017625.1 1208001 1209062 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_2628 putative oxidoreductase; alcohol dehydrogenase 1208001..1209062 Escherichia coli DH1 12704708 YP_006091087.1 CDS EcDH1_1124 NC_017625.1 1209074 1209946 D PFAM: Aldose 1-epimerase; KEGG: ssn:SSON_2627 hypothetical protein; aldose 1-epimerase 1209074..1209946 Escherichia coli DH1 12704709 YP_006091088.1 CDS EcDH1_1125 NC_017625.1 1209994 1210416 R PFAM: DoxX family protein; KEGG: sfx:S2762 hypothetical protein; DoxX family protein complement(1209994..1210416) Escherichia coli DH1 12704710 YP_006091089.1 CDS EcDH1_1126 NC_017625.1 1210513 1211715 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ssn:SSON_2624 phenylpropionate dioxygenase, ferredoxin reductase subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1210513..1211715) Escherichia coli DH1 12704711 YP_006091090.1 CDS EcDH1_1127 NC_017625.1 1211725 1212537 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_2565 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; short-chain dehydrogenase/reductase SDR complement(1211725..1212537) Escherichia coli DH1 12704712 YP_006091091.1 CDS EcDH1_1128 NC_017625.1 1212534 1212854 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: ssn:SSON_2622 3-phenylpropionate dioxygenase ferredoxin subunit; Rieske (2Fe-2S) domain-containing protein complement(1212534..1212854) Escherichia coli DH1 12704713 YP_006091092.1 CDS EcDH1_1129 NC_017625.1 1212854 1213372 R PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: sfx:S2758 3-phenylpropionate dioxygenase subunit beta; aromatic-ring-hydroxylating dioxygenase subunit beta complement(1212854..1213372) Escherichia coli DH1 12704714 YP_006091093.1 CDS EcDH1_1130 NC_017625.1 1213369 1214730 R PFAM: Rieske [2Fe-2S] domain protein; Aromatic-ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: ssn:SSON_2620 large terminal subunit of phenylpropionate dioxygenase; aromatic-ring-hydroxylating dioxygenase subunit alpha-like protein complement(1213369..1214730) Escherichia coli DH1 12704715 YP_006091094.1 CDS EcDH1_1131 NC_017625.1 1214866 1215756 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_2561 DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism; LysR family transcriptional regulator 1214866..1215756 Escherichia coli DH1 12704716 YP_006091095.1 CDS EcDH1_1132 NC_017625.1 1215916 1217055 D KEGG: ssn:SSON_2618 putative 3-phenylpropionic acid transporter; TIGRFAM: phenyl proprionate permease family protein; PFAM: proton/sugar symporter LacY; major facilitator superfamily MFS_1; phenyl proprionate permease family protein 1215916..1217055 Escherichia coli DH1 12704717 YP_006091096.1 CDS EcDH1_1133 NC_017625.1 1217047 1218327 R PFAM: PRD domain protein; KEGG: sbo:SBO_2559 stationary phase inducible protein CsiE; transcriptional antiterminator BglG complement(1217047..1218327) Escherichia coli DH1 12704718 YP_006091097.1 CDS EcDH1_1134 NC_017625.1 1218518 1219372 R KEGG: sdy:SDY_2730 putative enzyme; hypothetical protein complement(1218518..1219372) Escherichia coli DH1 12704719 YP_006091098.1 CDS EcDH1_1135 NC_017625.1 1219517 1220320 R PFAM: inositol monophosphatase; KEGG: sbo:SBO_2557 inositol monophosphatase; inositol-phosphate phosphatase complement(1219517..1220320) Escherichia coli DH1 12704720 YP_006091099.1 CDS EcDH1_1136 NC_017625.1 1220439 1221179 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sbc:SbBS512_E2907 RNA methyltransferase, TrmH family, group 1; RNA methyltransferase, TrmH family, group 1 1220439..1221179 Escherichia coli DH1 12704721 YP_006091100.1 CDS EcDH1_1137 NC_017625.1 1221631 1222119 D TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: sdy:SDY_2727 DNA-binding transcriptional repressor; AsnC family transcriptional regulator 1221631..1222119 Escherichia coli DH1 12704722 YP_006091101.1 CDS EcDH1_1138 NC_017625.1 1222231 1223445 D TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sdy:SDY_2726 putative aminotransferase; cysteine desulfurase IscS 1222231..1223445 Escherichia coli DH1 12704723 YP_006091102.1 CDS EcDH1_1139 NC_017625.1 1223473 1223859 D TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: sdy:SDY_2725 scaffold protein; FeS cluster assembly scaffold IscU 1223473..1223859 Escherichia coli DH1 12704724 YP_006091103.1 CDS EcDH1_1140 NC_017625.1 1223876 1224199 D TIGRFAM: iron-sulfur cluster assembly protein IscA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sdy:SDY_2724 iron-sulfur cluster assembly protein; iron-sulfur cluster assembly protein IscA 1223876..1224199 Escherichia coli DH1 12704725 YP_006091104.1 CDS EcDH1_1141 NC_017625.1 1224295 1224810 D TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSC20 oligomerisation; KEGG: sbc:SbBS512_E2902 Fe-S protein assembly co-chaperone HscB; co-chaperone Hsc20 1224295..1224810 Escherichia coli DH1 12704726 YP_006091105.1 CDS EcDH1_1142 NC_017625.1 1224827 1226677 D KEGG: sdy:SDY_2722 chaperone protein HscA; TIGRFAM: Fe-S protein assembly chaperone HscA; PFAM: Heat shock protein 70; Fe-S protein assembly chaperone HscA 1224827..1226677 Escherichia coli DH1 12704727 YP_006091106.1 CDS EcDH1_1143 NC_017625.1 1226679 1227014 D TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: sbc:SbBS512_E2900 ferredoxin, 2Fe-2S type, ISC system; ferredoxin, 2Fe-2S type, ISC system 1226679..1227014 Escherichia coli DH1 12704728 YP_006091107.1 CDS EcDH1_1144 NC_017625.1 1227026 1227226 D TIGRFAM: FeS assembly protein IscX; PFAM: protein of unknown function DUF528; KEGG: sdy:SDY_2720 hypothetical protein; FeS assembly protein IscX 1227026..1227226 Escherichia coli DH1 12704729 YP_006091108.1 CDS EcDH1_1145 NC_017625.1 1227404 1228687 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ssn:SSON_2605 aminopeptidase B; PepB aminopeptidase 1227404..1228687 Escherichia coli DH1 12704730 YP_006091109.1 CDS EcDH1_1146 NC_017625.1 1228829 1229605 D PFAM: SseB family protein; KEGG: sfv:SFV_2570 enhanced serine sensitivity protein SseB; SseB family protein 1228829..1229605 Escherichia coli DH1 12704731 YP_006091110.1 CDS EcDH1_1147 NC_017625.1 1230423 1231268 R PFAM: Rhodanese domain protein; KEGG: ssn:SSON_2603 3-mercaptopyruvate sulfurtransferase; Rhodanese domain-containing protein complement(1230423..1231268) Escherichia coli DH1 12704732 YP_006091111.1 CDS EcDH1_1148 NC_017625.1 1231475 1236436 D PFAM: alpha-2-macroglobulin domain protein; alpha-2-macroglobulin domain protein 2; KEGG: ssn:SSON_2602 hypothetical protein; alpha-2-macroglobulin domain-containing protein 1231475..1236436 Escherichia coli DH1 12704733 YP_006091112.1 CDS EcDH1_1149 NC_017625.1 1236437 1238749 D TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; Penicillin-binding domain protein; KEGG: sbc:SbBS512_E2894 penicillin-binding protein 1C; penicillin-binding protein 1C 1236437..1238749 Escherichia coli DH1 12704734 YP_006091113.1 CDS EcDH1_1150 NC_017625.1 1238898 1239329 D PFAM: nucleoside diphosphate kinase; KEGG: sdy:SDY_2714 nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1238898..1239329 Escherichia coli DH1 12704735 YP_006091114.1 CDS EcDH1_1151 NC_017625.1 1239479 1240633 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: sdy:SDY_2713 hypothetical protein; radical SAM enzyme, Cfr family 1239479..1240633 Escherichia coli DH1 12704736 YP_006091115.1 CDS EcDH1_1152 NC_017625.1 1240918 1241931 D PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E2891 helix-turn-helix DNA-binding domain protein; XRE family transcriptional regulator 1240918..1241931 Escherichia coli DH1 12704737 YP_006091116.1 CDS EcDH1_1153 NC_017625.1 1241958 1243076 D KEGG: sbo:SBO_2539 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1241958..1243076 Escherichia coli DH1 12704738 YP_006091117.1 CDS EcDH1_1154 NC_017625.1 1243187 1244461 D KEGG: ssn:SSON_2596 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; histidyl-tRNA synthetase 1243187..1244461 Escherichia coli DH1 12704739 YP_006091118.1 CDS EcDH1_1155 NC_017625.1 1244479 1245099 D KEGG: sdy:SDY_2709 hypothetical protein; hypothetical protein 1244479..1245099 Escherichia coli DH1 12704740 YP_006091119.1 CDS EcDH1_1156 NC_017625.1 1245110 1246288 D TIGRFAM: outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone; KEGG: sdy:SDY_2708 outer membrane protein assembly complex subunit YfgL; outer membrane assembly lipoprotein YfgL 1245110..1246288 Escherichia coli DH1 12704741 YP_006091120.1 CDS EcDH1_1157 NC_017625.1 1246406 1247878 D TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sfv:SFV_2558 GTP-binding protein EngA; small GTP-binding protein 1246406..1247878 Escherichia coli DH1 12704742 YP_006091121.1 CDS EcDH1_1158 NC_017625.1 1247948 1248163 D PFAM: protein of unknown function DUF1407; KEGG: sbo:SBO_2534 hypothetical protein; hypothetical protein 1247948..1248163 Escherichia coli DH1 12704743 YP_006091122.1 CDS EcDH1_1159 NC_017625.1 1248160 1249530 R KEGG: sbc:SbBS512_E2885 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(1248160..1249530) Escherichia coli DH1 12704744 YP_006091123.1 CDS EcDH1_1160 NC_017625.1 1249692 1251158 D KEGG: sbc:SbBS512_E2883 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 1249692..1251158 Escherichia coli DH1 12704745 YP_006091124.1 CDS EcDH1_1161 NC_017625.1 1251227 1252804 D TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: sfx:S2725 bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase large subunit 1251227..1252804 Escherichia coli DH1 12704746 YP_006091125.1 CDS EcDH1_1162 NC_017625.1 1252897 1253436 R KEGG: sdy:SDY_2702 hypothetical protein; hypothetical protein complement(1252897..1253436) Escherichia coli DH1 12704747 YP_006091126.1 CDS EcDH1_1163 NC_017625.1 1253452 1253967 R PFAM: 17 kDa surface antigen; KEGG: ssn:SSON_2587 putative outer membrane lipoprotein; 17 kDa surface antigen complement(1253452..1253967) Escherichia coli DH1 12704748 YP_006091127.1 CDS EcDH1_1164 NC_017625.1 1254281 1254472 R KEGG: sdy:SDY_2696 hypothetical protein; hypothetical protein complement(1254281..1254472) Escherichia coli DH1 12704749 YP_006091128.1 CDS EcDH1_1165 NC_017625.1 1254490 1254642 D hypothetical protein 1254490..1254642 Escherichia coli DH1 12704750 YP_006091129.1 CDS EcDH1_1166 NC_017625.1 1254824 1257067 D PFAM: EAL domain protein; MASE1 domain protein; SMART: GGDEF domain containing protein; KEGG: ssn:SSON_2585 putative cytochrome c-type biogenesis protein; diguanylate cyclase/phosphodiesterase 1254824..1257067 Escherichia coli DH1 12704751 YP_006091130.1 CDS EcDH1_1167 NC_017625.1 1257106 1258647 R PFAM: Ppx/GppA phosphatase; KEGG: ssn:SSON_2584 exopolyphosphatase; Ppx/GppA phosphatase complement(1257106..1258647) Escherichia coli DH1 12704752 YP_006091131.1 CDS EcDH1_1168 NC_017625.1 1258652 1260718 R PFAM: Polyphosphate kinase; KEGG: sdy:SDY_2690 polyphosphate kinase; polyphosphate kinase complement(1258652..1260718) Escherichia coli DH1 12704753 YP_006091132.1 CDS EcDH1_1169 NC_017625.1 1260890 1261528 R TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfv:SFV_2545 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase complement(1260890..1261528) Escherichia coli DH1 12704754 YP_006091133.1 CDS EcDH1_1170 NC_017625.1 1261528 1262565 R KEGG: sfx:S2692 phosphoribosylaminoimidazole synthetase; TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase complement(1261528..1262565) Escherichia coli DH1 12704755 YP_006091134.1 CDS EcDH1_1171 NC_017625.1 1262890 1263516 D KEGG: sdy:SDY_2687 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase 1262890..1263516 Escherichia coli DH1 12704756 YP_006091135.1 CDS EcDH1_1172 NC_017625.1 1263602 1264891 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_2579 uracil transporter; uracil-xanthine permease 1263602..1264891 Escherichia coli DH1 12704757 YP_006091136.1 CDS EcDH1_1173 NC_017625.1 1264941 1265687 D TIGRFAM: DnaA regulatory inactivator Hda; PFAM: Chromosomal replication initiator DnaA; KEGG: sbc:SbBS512_E2870 DnaA family protein Hda; DnaA regulatory inactivator Hda 1264941..1265687 Escherichia coli DH1 12704758 YP_006091137.1 CDS EcDH1_1174 NC_017625.1 1265825 1266184 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sdy:SDY_2684 putative oxidoreductase; arsenate reductase complement(1265825..1266184) Escherichia coli DH1 12704759 YP_006091138.1 CDS EcDH1_1175 NC_017625.1 1266205 1267668 R PFAM: peptidase M48 Ste24p; KEGG: sfv:SFV_2539 hypothetical protein; peptidase M48 Ste24p complement(1266205..1267668) Escherichia coli DH1 12704760 YP_006091139.1 CDS EcDH1_1176 NC_017625.1 1267881 1268942 D PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_2682 putative permease; hypothetical protein 1267881..1268942 Escherichia coli DH1 12704761 YP_006091140.1 CDS EcDH1_1177 NC_017625.1 1268980 1269828 R PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2681 predicted formate transporter; formate/nitrite transporter complement(1268980..1269828) Escherichia coli DH1 12704762 YP_006091141.1 CDS EcDH1_1178 NC_017625.1 1269850 1271862 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_2572 putative 2-component regulator, interaction with sigma 54; Fis family NifA subfamily transcriptional regulator complement(1269850..1271862) Escherichia coli DH1 12704763 YP_006091142.1 CDS EcDH1_1179 NC_017625.1 1271892 1272305 R PFAM: formate hydrogenlyase maturation HycH; KEGG: ssn:SSON_2571 putative protein processing element; formate hydrogenlyase maturation HycH complement(1271892..1272305) Escherichia coli DH1 12704764 YP_006091143.1 CDS EcDH1_1180 NC_017625.1 1272298 1273056 R PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: sbo:SBO_2510 hydrogenase 4 Fe-S subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1272298..1273056) Escherichia coli DH1 12704765 YP_006091144.1 CDS EcDH1_1181 NC_017625.1 1273053 1273598 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2533 hydrogenase 4 subunit H; 4Fe-4S ferredoxin complement(1273053..1273598) Escherichia coli DH1 12704766 YP_006091145.1 CDS EcDH1_1182 NC_017625.1 1273608 1275275 R PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: ssn:SSON_2568 hydrogenase 4 subunit; NADH dehydrogenase (ubiquinone) 30 kDa subunit complement(1273608..1275275) Escherichia coli DH1 12704767 YP_006091146.1 CDS EcDH1_1183 NC_017625.1 1275265 1276845 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2567 hydrogenase 4 subunit F; NADH dehydrogenase (quinone) complement(1275265..1276845) Escherichia coli DH1 12704768 YP_006091147.1 CDS EcDH1_1184 NC_017625.1 1276850 1277500 R PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: ssn:SSON_2566 hydrogenase 4 membrane subunit; NADH-ubiquinone oxidoreductase chain 4L complement(1276850..1277500) Escherichia coli DH1 12704769 YP_006091148.1 CDS EcDH1_1185 NC_017625.1 1277512 1278951 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: sfx:S2677 hydrogenase 4 subunit D; NADH dehydrogenase (quinone) complement(1277512..1278951) Escherichia coli DH1 12704770 YP_006091149.1 CDS EcDH1_1186 NC_017625.1 1278968 1279915 R PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sfx:S2676 hydrogenase 4 membrane subunit; respiratory-chain NADH dehydrogenase subunit 1 complement(1278968..1279915) Escherichia coli DH1 12704771 YP_006091150.1 CDS EcDH1_1187 NC_017625.1 1279926 1281944 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ssn:SSON_2563 hydrogenase 4 subunit B; NADH dehydrogenase (quinone) complement(1279926..1281944) Escherichia coli DH1 12704772 YP_006091151.1 CDS EcDH1_1188 NC_017625.1 1281944 1282561 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2526 hydrogenase 4 Fe-S subunit; 4Fe-4S ferredoxin complement(1281944..1282561) Escherichia coli DH1 12704773 YP_006091152.1 CDS EcDH1_1189 NC_017625.1 1282814 1283284 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; Redoxin domain protein; KEGG: sdy:SDY_2669 thioredoxin-dependent thiol peroxidase; peroxiredoxin complement(1282814..1283284) Escherichia coli DH1 12704774 YP_006091153.1 CDS EcDH1_1190 NC_017625.1 1283284 1283856 R PFAM: amino acid-binding ACT domain protein; KEGG: sbc:SbBS512_E2851 glycine cleavage system transcriptional repressor; amino acid-binding ACT protein complement(1283284..1283856) Escherichia coli DH1 12704775 YP_006091154.1 CDS EcDH1_1191 NC_017625.1 1284002 1284880 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthase 1284002..1284880 Escherichia coli DH1 12704776 YP_006091155.1 CDS EcDH1_1192 NC_017625.1 1284897 1285931 D PFAM: NlpBDapX family lipoprotein; KEGG: ssn:SSON_2558 lipoprotein; NlpBDapX family lipoprotein 1284897..1285931 Escherichia coli DH1 12704777 YP_006091156.1 CDS EcDH1_1193 NC_017625.1 1286144 1286857 D KEGG: sbc:SbBS512_E2848 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 1286144..1286857 Escherichia coli DH1 12704778 YP_006091157.1 CDS EcDH1_1194 NC_017625.1 1287025 1287888 D PFAM: protein of unknown function zinc metallopeptidase putative; KEGG: sfv:SFV_2520 hypothetical protein; zinc metallopeptidase 1287025..1287888 Escherichia coli DH1 12704779 YP_006091158.1 CDS EcDH1_1195 NC_017625.1 1287903 1289918 D PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF699 ATPase putative; KEGG: sfx:S2667 hypothetical protein; hypothetical protein 1287903..1289918 Escherichia coli DH1 12704780 YP_006091159.1 CDS EcDH1_1196 NC_017625.1 1289992 1290690 D PFAM: dienelactone hydrolase; phospholipase/Carboxylesterase; KEGG: sfv:SFV_2518 esterase YpfH; phospholipase/Carboxylesterase 1289992..1290690 Escherichia coli DH1 12704781 YP_006091160.1 CDS EcDH1_1197 NC_017625.1 1290800 1291000 R KEGG: sdy:SDY_2657 hypothetical protein; hypothetical protein complement(1290800..1291000) Escherichia coli DH1 12704782 YP_006091161.1 CDS EcDH1_1198 NC_017625.1 1291028 1292155 R TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sbo:SBO_2488 succinyl-diaminopimelate desuccinylase; succinyl-diaminopimelate desuccinylase complement(1291028..1292155) Escherichia coli DH1 12704783 YP_006091162.1 CDS EcDH1_1199 NC_017625.1 1292159 1292515 R PFAM: arsenate reductase and related; KEGG: sdy:SDY_2655 hypothetical protein; arsenate reductase complement(1292159..1292515) Escherichia coli DH1 12704784 YP_006091163.1 CDS EcDH1_1200 NC_017625.1 1293054 1296167 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: ssn:SSON_2550 aminoglycoside/multidrug efflux system; hydrophobe/amphiphile efflux-1 (HAE1) family transporter complement(1293054..1296167) Escherichia coli DH1 12704785 YP_006091164.1 CDS EcDH1_1201 NC_017625.1 1296331 1298031 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sdy:SDY_2653 nitrate/nitrite sensor protein NarQ; histidine kinase complement(1296331..1298031) Escherichia coli DH1 12704786 YP_006091165.1 CDS EcDH1_1202 NC_017625.1 1298237 1300216 D TIGRFAM: glutamate synthase, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2484 putative oxidoreductase Fe-S binding subunit; glutamate synthase, small subunit 1298237..1300216 Escherichia coli DH1 12704787 YP_006091166.1 CDS EcDH1_1203 NC_017625.1 1300284 1300859 D PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2835 hydrolase, NUDIX family; NUDIX hydrolase 1300284..1300859 Escherichia coli DH1 12704788 YP_006091167.1 CDS EcDH1_1204 NC_017625.1 1300985 1302028 D PFAM: protein of unknown function DUF1176; KEGG: sbo:SBO_2482 hypothetical protein; hypothetical protein 1300985..1302028 Escherichia coli DH1 12704789 YP_006091168.1 CDS EcDH1_1205 NC_017625.1 1302123 1304126 R TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: sfx:S2658 transketolase; transketolase complement(1302123..1304126) Escherichia coli DH1 12704790 YP_006091169.1 CDS EcDH1_1206 NC_017625.1 1304146 1305096 R KEGG: ssn:SSON_2544 transaldolase A; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase complement(1304146..1305096) Escherichia coli DH1 12704791 YP_006091170.1 CDS EcDH1_1207 NC_017625.1 1305385 1307664 D PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: sdy:SDY_2645 malic enzyme; Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase 1305385..1307664 Escherichia coli DH1 12704792 YP_006091171.1 CDS EcDH1_1208 NC_017625.1 1307957 1308292 D PFAM: microcompartments protein; KEGG: sfv:SFV_2506 hypothetical protein; microcompartments protein 1307957..1308292 Escherichia coli DH1 12704793 YP_006091172.1 CDS EcDH1_1209 NC_017625.1 1308305 1308784 D TIGRFAM: ethanolamine utilization protein, EutP; KEGG: sbc:SbBS512_E2827 ethanolamine utilization protein, EutP; ethanolamine utilization protein, EutP 1308305..1308784 Escherichia coli DH1 12704794 YP_006091173.1 CDS EcDH1_1210 NC_017625.1 1308759 1309460 D PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: ssn:SSON_2540 hypothetical protein; Ethanolamine utilization EutQ family protein 1308759..1309460 Escherichia coli DH1 12704795 YP_006091174.1 CDS EcDH1_1211 NC_017625.1 1309457 1310260 D PFAM: cobalamin adenosyltransferase; KEGG: ssn:SSON_2539 hypothetical protein; cob(I)yrinic acid a,c-diamide adenosyltransferase 1309457..1310260 Escherichia coli DH1 12704796 YP_006091175.1 CDS EcDH1_1212 NC_017625.1 1310257 1311273 D KEGG: ssn:SSON_2538 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; phosphate acetyltransferase 1310257..1311273 Escherichia coli DH1 12704797 YP_006091176.1 CDS EcDH1_1213 NC_017625.1 1311312 1311605 D PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2823 ethanolamine utilization protein EutM; microcompartments protein 1311312..1311605 Escherichia coli DH1 12704798 YP_006091177.1 CDS EcDH1_1214 NC_017625.1 1311712 1311999 D PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: sbc:SbBS512_E2822 ethanolamine utilization protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 1311712..1311999 Escherichia coli DH1 12704799 YP_006091178.1 CDS EcDH1_1215 NC_017625.1 1312011 1313414 D PFAM: Aldehyde Dehydrogenase; KEGG: sbo:SBO_2470 ethanolamine utilization; aldehyde dehydrogenase 1312011..1313414 Escherichia coli DH1 12704800 YP_006091179.1 CDS EcDH1_1216 NC_017625.1 1313425 1314261 D TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: sbc:SbBS512_E2820 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein 1313425..1314261 Escherichia coli DH1 12704801 YP_006091180.1 CDS EcDH1_1217 NC_017625.1 1314251 1315438 D PFAM: iron-containing alcohol dehydrogenase; KEGG: ssn:SSON_2533 EutG; iron-containing alcohol dehydrogenase 1314251..1315438 Escherichia coli DH1 12704802 YP_006091181.1 CDS EcDH1_1218 NC_017625.1 1315655 1316881 D PFAM: Ethanolamine utilisation protein EutH; KEGG: ssn:SSON_2532 EutH; Ethanolamine utilization protein EutH 1315655..1316881 Escherichia coli DH1 12704803 YP_006091182.1 CDS EcDH1_1219 NC_017625.1 1316878 1318281 D PFAM: Ethanolamine utilisation EutA; KEGG: ssn:SSON_2531 reactivating factor for ethanolamine ammonia lyase; Ethanolamine utilization EutA 1316878..1318281 Escherichia coli DH1 12704804 YP_006091183.1 CDS EcDH1_1220 NC_017625.1 1318293 1319654 D PFAM: Ethanolamine ammonia lyase large subunit; KEGG: sbc:SbBS512_E2816 ethanolamine ammonia-lyase, large subunit; Ethanolamine ammonia lyase large subunit 1318293..1319654 Escherichia coli DH1 12704805 YP_006091184.1 CDS EcDH1_1221 NC_017625.1 1319675 1320562 D PFAM: Ethanolamine ammonia-lyase light chain; KEGG: ssn:SSON_2529 ethanolamine ammonia-lyase small subunit; ethanolamine ammonia-lyase 1319675..1320562 Escherichia coli DH1 12704806 YP_006091185.1 CDS EcDH1_1222 NC_017625.1 1320572 1321231 D PFAM: microcompartments protein; KEGG: sdy:SDY_2637 hypothetical protein; microcompartments protein 1320572..1321231 Escherichia coli DH1 12704807 YP_006091186.1 CDS EcDH1_1223 NC_017625.1 1321244 1321744 D PFAM: microcompartments protein; KEGG: sbc:SbBS512_E2810 putative ethanolamine utilization protein EutK; microcompartments protein 1321244..1321744 Escherichia coli DH1 12704808 YP_006091187.1 CDS EcDH1_1224 NC_017625.1 1321790 1322842 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_2635 transcriptional regulator EutR; AraC family transcriptional regulator 1321790..1322842 Escherichia coli DH1 12704809 YP_006091188.1 CDS EcDH1_1225 NC_017625.1 1322848 1323747 R PFAM: coproporphyrinogen III oxidase; KEGG: sbo:SBO_2461 coproporphyrinogen III oxidase; coproporphyrinogen oxidase complement(1322848..1323747) Escherichia coli DH1 12704810 YP_006091189.1 CDS EcDH1_1226 NC_017625.1 1323751 1324620 R PFAM: cell wall hydrolase/autolysin; KEGG: sbc:SbBS512_E2807 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase complement(1323751..1324620) Escherichia coli DH1 12704811 YP_006091190.1 CDS EcDH1_1227 NC_017625.1 1324834 1325259 D PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_2632 putative acetyltransferase; N-acetyltransferase GCN5 1324834..1325259 Escherichia coli DH1 12704812 YP_006091191.1 CDS EcDH1_1228 NC_017625.1 1325246 1325695 D KEGG: sdy:SDY_2631 hypothetical protein; hypothetical protein 1325246..1325695 Escherichia coli DH1 12704813 YP_006091192.1 CDS EcDH1_1229 NC_017625.1 1325756 1326331 D PFAM: protein of unknown function DUF1131; KEGG: sbc:SbBS512_E2804 putative lipoprotein; hypothetical protein 1325756..1326331 Escherichia coli DH1 12704814 YP_006091193.1 CDS EcDH1_1230 NC_017625.1 1326427 1327326 D TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sbc:SbBS512_E2803 dyp-type peroxidase family protein; dyp-type peroxidase family protein 1326427..1327326 Escherichia coli DH1 12704815 YP_006091194.1 CDS EcDH1_1231 NC_017625.1 1327566 1328870 R PFAM: beta-lactamase; KEGG: ssn:SSON_2519 hypothetical protein; beta-lactamase complement(1327566..1328870) Escherichia coli DH1 12704816 YP_006091195.1 CDS EcDH1_1232 NC_017625.1 1328875 1330299 R PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sfx:S2630 N-acetylmuramic acid phosphotransfer permease; PTS system transporter subunit IIC complement(1328875..1330299) Escherichia coli DH1 12704817 YP_006091196.1 CDS EcDH1_1233 NC_017625.1 1330303 1331199 R TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: sfv:SFV_2481 N-acetylmuramic acid-6-phosphate etherase; RpiR family transcriptional regulator complement(1330303..1331199) Escherichia coli DH1 12704818 YP_006091197.1 CDS EcDH1_1234 NC_017625.1 1331363 1332220 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbc:SbBS512_E2799 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 1331363..1332220 Escherichia coli DH1 12704819 YP_006091198.1 CDS EcDH1_1235 NC_017625.1 1332349 1333140 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbc:SbBS512_E2798 oxidoreductase UcpA; short-chain dehydrogenase/reductase SDR 1332349..1333140 Escherichia coli DH1 12704820 YP_006091199.1 CDS EcDH1_1236 NC_017625.1 1333444 1334460 D TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sbo:SBO_2450 thiosulfate transporter subunit; sulfate ABC transporter substrate-binding protein 1333444..1334460 Escherichia coli DH1 12704821 YP_006091200.1 CDS EcDH1_1237 NC_017625.1 1334460 1335293 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2796 sulfate ABC transporter, permease protein CysT; sulfate ABC transporter permease 1334460..1335293 Escherichia coli DH1 12704822 YP_006091201.1 CDS EcDH1_1238 NC_017625.1 1335293 1336168 D TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2795 sulfate ABC transporter, permease protein CysW; sulfate ABC transporter permease 1335293..1336168 Escherichia coli DH1 12704823 YP_006091202.1 CDS EcDH1_1239 NC_017625.1 1336158 1337255 D KEGG: sbo:SBO_2447 sulfate/thiosulfate transporter subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; sulfate ABC transporter ATPase 1336158..1337255 Escherichia coli DH1 12704824 YP_006091203.1 CDS EcDH1_1240 NC_017625.1 1337389 1338300 D TIGRFAM: cysteine synthase; cysteine synthase B; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ssn:SSON_2510 cysteine synthase B; cysteine synthase B 1337389..1338300 Escherichia coli DH1 12704825 YP_006091204.1 CDS EcDH1_1241 NC_017625.1 1338489 1339223 R PFAM: WGR domain protein; KEGG: sfv:SFV_2472 hypothetical protein; WGR domain protein complement(1338489..1339223) Escherichia coli DH1 12704826 YP_006091205.1 CDS EcDH1_1242 NC_017625.1 1339256 1339630 R KEGG: sfv:SFV_2471 hypothetical protein; hypothetical protein complement(1339256..1339630) Escherichia coli DH1 12704827 YP_006091206.1 CDS EcDH1_1243 NC_017625.1 1339735 1340586 D TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: ssn:SSON_2508 pyridoxal kinase; pyridoxal kinase 1339735..1340586 Escherichia coli DH1 12704828 YP_006091207.1 CDS EcDH1_1244 NC_017625.1 1340629 1341138 R TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: ssn:SSON_2506 glucose-specific PTS system component; PTS system glucose subfamily transporter subunit IIA complement(1340629..1341138) Escherichia coli DH1 12704829 YP_006091208.1 CDS EcDH1_1245 NC_017625.1 1341179 1342906 R TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sdy:SDY_2613 phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate-protein phosphotransferase complement(1341179..1342906) Escherichia coli DH1 12704830 YP_006091209.1 CDS EcDH1_1246 NC_017625.1 1342951 1343208 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: esa:ESA_00830 phosphohistidinoprotein-hexose phosphotransferase component of PTS system (HPr); phosphocarrier, Hpr family complement(1342951..1343208) Escherichia coli DH1 12704831 YP_006091210.1 CDS EcDH1_1247 NC_017625.1 1343592 1344563 R TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sbc:SbBS512_E2766 cysteine synthase A; cysteine synthase A complement(1343592..1344563) Escherichia coli DH1 12704832 YP_006091211.1 CDS EcDH1_1248 NC_017625.1 1344748 1345509 R PFAM: protein of unknown function DUF540; KEGG: sbc:SbBS512_E2767 CysZ protein; hypothetical protein complement(1344748..1345509) Escherichia coli DH1 12704833 YP_006091212.1 CDS EcDH1_1249 NC_017625.1 1345739 1346725 D TIGRFAM: cell division protein ZipA; PFAM: ZipA FtsZ-binding region; KEGG: sfv:SFV_2464 cell division protein ZipA; cell division protein ZipA 1345739..1346725 Escherichia coli DH1 12704834 YP_006091213.1 CDS EcDH1_1250 NC_017625.1 1346796 1348811 D KEGG: ssn:SSON_2500 NAD-dependent DNA ligase LigA; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase OB-fold; NAD-dependent DNA ligase adenylation; SMART: Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase; NAD-dependent DNA ligase 1346796..1348811 Escherichia coli DH1 12704835 YP_006091214.1 CDS EcDH1_1251 NC_017625.1 1348813 1349031 D KEGG: sdy:SDY_2607 Z3676 gene product; hypothetical protein 1348813..1349031 Escherichia coli DH1 12704836 YP_006091215.1 CDS EcDH1_1252 NC_017625.1 1349028 1350026 R PFAM: Bile acid:sodium symporter; KEGG: ssn:SSON_2498 putative cytochrome oxidase; bile acid:sodium symporter complement(1349028..1350026) Escherichia coli DH1 12704837 YP_006091216.1 CDS EcDH1_1253 NC_017625.1 1350116 1351042 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E2773 transcriptional regulator, LysR family; LysR family transcriptional regulator 1350116..1351042 Escherichia coli DH1 12704838 YP_006091217.1 CDS EcDH1_1254 NC_017625.1 1351081 1351845 R PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: stm:STM2423 hypothetical protein; nucleoside-specific channel-forming protein Tsx complement(1351081..1351845) Escherichia coli DH1 12704839 YP_006091218.1 CDS EcDH1_1255 NC_017625.1 1352094 1352927 D TIGRFAM: xanthosine phosphorylase; inosine guanosine and xanthosine phosphorylase family; PFAM: purine or other phosphorylase family 1; KEGG: set:SEN2403 xanthosine phosphorylase; xanthosine phosphorylase 1352094..1352927 Escherichia coli DH1 12704840 YP_006091219.1 CDS EcDH1_1256 NC_017625.1 1352987 1354243 D TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; KEGG: stm:STM2421 xanthosine permease; nucleoside transporter 1352987..1354243 Escherichia coli DH1 12704841 YP_006091220.1 CDS EcDH1_1257 NC_017625.1 1354296 1354454 D KEGG: stm:STM2420.1n hypothetical protein; hypothetical protein 1354296..1354454 Escherichia coli DH1 12704842 YP_006091221.1 CDS EcDH1_1258 NC_017625.1 1354495 1355379 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_00391 DNA-binding transcriptional activator XapR; LysR family transcriptional regulator 1354495..1355379 Escherichia coli DH1 12704843 YP_006091222.1 CDS EcDH1_1259 NC_017625.1 1356300 1357715 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sfx:S2605 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 1356300..1357715 Escherichia coli DH1 12704848 YP_006091223.1 CDS EcDH1_1260 NC_017625.1 1357767 1358159 R PFAM: protein of unknown function DUF1323; KEGG: sbc:SbBS512_E2780 hypothetical protein; hypothetical protein complement(1357767..1358159) Escherichia coli DH1 12704849 YP_006091224.1 CDS EcDH1_1261 NC_017625.1 1358161 1358505 R PFAM: protein of unknown function DUF1323; KEGG: sdy:SDY_2596 hypothetical protein; hypothetical protein complement(1358161..1358505) Escherichia coli DH1 12704850 YP_006091225.1 CDS EcDH1_1262 NC_017625.1 1359140 1361329 D PFAM: GGDEF domain containing protein; EAL domain protein; MASE1 domain protein; KEGG: sbo:SBO_2421 hypothetical protein; diguanylate cyclase/phosphodiesterase 1359140..1361329 Escherichia coli DH1 12704853 YP_006091226.1 CDS EcDH1_1263 NC_017625.1 1361366 1361506 R hypothetical protein complement(1361366..1361506) Escherichia coli DH1 12704854 YP_006091227.1 CDS EcDH1_1264 NC_017625.1 1361529 1362641 R PFAM: transposase IS4 family protein; KEGG: ssn:SSON_P186 IS186 ORF1; transposase IS4 family protein complement(1361529..1362641) Escherichia coli DH1 12704855 YP_006091228.1 CDS EcDH1_1265 NC_017625.1 1362728 1363930 R TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sdy:SDY_2593 permease of transport system for 3 nucleosides; nucleoside transporter complement(1362728..1363930) Escherichia coli DH1 12704856 YP_006091229.1 CDS EcDH1_1266 NC_017625.1 1364266 1365504 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; KEGG: sbc:SbBS512_E2760 manganese transport protein MntH; NRAMP family Mn2+/Fe2+ transporter 1364266..1365504 Escherichia coli DH1 12704857 YP_006091230.1 CDS EcDH1_1267 NC_017625.1 1365645 1365971 R KEGG: sbc:SbBS512_E2759 hypothetical protein; hypothetical protein complement(1365645..1365971) Escherichia coli DH1 12704858 YP_006091231.1 CDS EcDH1_1268 NC_017625.1 1366086 1367342 R PFAM: Chloride channel core; KEGG: sbc:SbBS512_E2758 chloride transporter, chloride channel (ClC) family; chloride channel protein complement(1366086..1367342) Escherichia coli DH1 12704859 YP_006091232.1 CDS EcDH1_1269 NC_017625.1 1367546 1368511 D KEGG: sbc:SbBS512_E2757 glucokinase; TIGRFAM: glucokinase; PFAM: Glucokinase; glucokinase 1367546..1368511 Escherichia coli DH1 12704860 YP_006091233.1 CDS EcDH1_1270 NC_017625.1 1368730 1369056 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbc:SbBS512_E2756 PTS system, fructose specific IIB subunit; PTS system fructose-specific transporter subunit IIB 1368730..1369056 Escherichia coli DH1 12704861 YP_006091234.1 CDS EcDH1_1271 NC_017625.1 1369078 1370325 D TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: sbc:SbBS512_E2755 PTS system, fructose-like, IIC component; PTS system fructose subfamily transporter subunit IIC 1369078..1370325 Escherichia coli DH1 12704862 YP_006091235.1 CDS EcDH1_1272 NC_017625.1 1370340 1371425 D PFAM: creatinase; peptidase M24; KEGG: sbo:SBO_2411 putative peptidase; peptidase M24 1370340..1371425 Escherichia coli DH1 12704863 YP_006091236.1 CDS EcDH1_1273 NC_017625.1 1371425 1372462 D PFAM: peptidase M20; peptidase M42 family protein; KEGG: sfv:SFV_2442 exoaminopeptidase; cellulase 1371425..1372462 Escherichia coli DH1 12704864 YP_006091237.1 CDS EcDH1_1274 NC_017625.1 1372487 1374982 D TIGRFAM: PTS system, fructose subfamily, IIA subunit; phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sfv:SFV_2441 putative PTS system enzyme IIA component, enzyme I; phosphoenolpyruvate-protein phosphotransferase 1372487..1374982 Escherichia coli DH1 12704865 YP_006091238.1 CDS EcDH1_1275 NC_017625.1 1374985 1375842 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_2474 putative AraC-type regulatory protein; AraC family transcriptional regulator complement(1374985..1375842) Escherichia coli DH1 12704866 YP_006091239.1 CDS EcDH1_1276 NC_017625.1 1375855 1376589 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sbc:SbBS512_E2750 response regulator; LytTR family two component transcriptional regulator complement(1375855..1376589) Escherichia coli DH1 12704867 YP_006091240.1 CDS EcDH1_1277 NC_017625.1 1376604 1378301 R PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: sbo:SBO_2406 putative sensor protein; signal transduction histidine kinase LytS complement(1376604..1378301) Escherichia coli DH1 12704868 YP_006091241.1 CDS EcDH1_1278 NC_017625.1 1378677 1379915 D PFAM: aminotransferase class I and II; KEGG: ssn:SSON_2470 aminotransferase; class I and II aminotransferase 1378677..1379915 Escherichia coli DH1 12704869 YP_006091242.1 CDS EcDH1_1279 NC_017625.1 1380407 1381327 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: sfv:SFV_2436 lipid A biosynthesis palmitoleoyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase complement(1380407..1381327) Escherichia coli DH1 12704870 YP_006091243.1 CDS EcDH1_1280 NC_017625.1 1381680 1381922 D KEGG: sdy:SDY_2575 hypothetical protein; hypothetical protein 1381680..1381922 Escherichia coli DH1 12704871 YP_006091244.1 CDS EcDH1_1281 NC_017625.1 1381999 1382274 R KEGG: ssn:SSON_2467 hypothetical protein; hypothetical protein complement(1381999..1382274) Escherichia coli DH1 12704872 YP_006091245.1 CDS EcDH1_1282 NC_017625.1 1382570 1383205 D KEGG: sdy:SDY_2573 hypothetical protein; hypothetical protein 1382570..1383205 Escherichia coli DH1 12704873 YP_006091246.1 CDS EcDH1_1283 NC_017625.1 1383718 1384968 D TIGRFAM: formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sbo:SBO_2400 formyl-coenzyme A transferase; formyl-CoA transferase 1383718..1384968 Escherichia coli DH1 12704874 YP_006091247.1 CDS EcDH1_1284 NC_017625.1 1385022 1386716 D TIGRFAM: oxalyl-CoA decarboxylase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ssn:SSON_2464 putative oxalyl-CoA decarboxylase; oxalyl-CoA decarboxylase 1385022..1386716 Escherichia coli DH1 12704875 YP_006091248.1 CDS EcDH1_1285 NC_017625.1 1386786 1387730 D PFAM: Auxin Efflux Carrier; KEGG: sdy:SDY_2570 putative transporter YfdV; auxin efflux carrier family protein 1386786..1387730 Escherichia coli DH1 12704876 YP_006091249.1 CDS EcDH1_1286 NC_017625.1 1387804 1388949 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sbo:SBO_2397 hypothetical protein; L-carnitine dehydratase/bile acid-inducible protein F 1387804..1388949 Escherichia coli DH1 12704877 YP_006091250.1 CDS EcDH1_1287 NC_017625.1 1389005 1392598 R PFAM: extracellular solute-binding protein family 3; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sfv:SFV_2429 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Hpt sensor hybrid histidine kinase complement(1389005..1392598) Escherichia coli DH1 12704878 YP_006091251.1 CDS EcDH1_1288 NC_017625.1 1392603 1393217 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sdy:SDY_4477 DNA-binding response regulator in two-component regulatory system with EvgS; LuxR family two component transcriptional regulator complement(1392603..1393217) Escherichia coli DH1 12704879 YP_006091252.1 CDS EcDH1_1289 NC_017625.1 1393633 1394796 D TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E2737 drug resistance MFS transporter, membrane fusion protein (MFP) subunit EmrK; efflux pump membrane protein 1393633..1394796 Escherichia coli DH1 12704880 YP_006091253.1 CDS EcDH1_1290 NC_017625.1 1394796 1396334 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2393 multidrug resistance protein Y; EmrB/QacA subfamily drug resistance transporter 1394796..1396334 Escherichia coli DH1 12704881 YP_006091254.1 CDS EcDH1_1291 NC_017625.1 1396442 1397770 R KEGG: ssn:SSON_2457 D-serine dehydratase; TIGRFAM: D-serine ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; D-serine ammonia-lyase complement(1396442..1397770) Escherichia coli DH1 12704882 YP_006091255.1 CDS EcDH1_1292 NC_017625.1 1397788 1399125 R TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: stm:STM3801 permease DsdX; gluconate transporter complement(1397788..1399125) Escherichia coli DH1 12704883 YP_006091256.1 CDS EcDH1_1293 NC_017625.1 1399343 1400278 D TIGRFAM: D-serine deaminase transcriptional activator; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cko:CKO_00019 DNA-binding transcriptional regulator DsdC; LysR family transcriptional regulator 1399343..1400278 Escherichia coli DH1 12704884 YP_006091257.1 CDS EcDH1_1294 NC_017625.1 1400462 1400662 R hypothetical protein complement(1400462..1400662) Escherichia coli DH1 12704885 YP_006091258.1 CDS EcDH1_1295 NC_017625.1 1400794 1401099 R KEGG: sfl:SF0298 hypothetical protein; hypothetical protein complement(1400794..1401099) Escherichia coli DH1 12704886 YP_006091259.1 CDS EcDH1_1296 NC_017625.1 1401099 1401461 R KEGG: sfl:SF0299 hypothetical protein; hypothetical protein complement(1401099..1401461) Escherichia coli DH1 12704887 YP_006091260.1 CDS EcDH1_1297 NC_017625.1 1401452 1401988 R KEGG: set:SEN1960 phage protein; phage protein complement(1401452..1401988) Escherichia coli DH1 12704888 YP_006091261.1 CDS EcDH1_1298 NC_017625.1 1402116 1402940 R KEGG: sed:SeD_A2294 hypothetical protein; hypothetical protein complement(1402116..1402940) Escherichia coli DH1 12704889 YP_006091262.1 CDS EcDH1_1299 NC_017625.1 1403006 1403368 R KEGG: sew:SeSA_A4443 hypothetical protein; hypothetical protein complement(1403006..1403368) Escherichia coli DH1 12704890 YP_006091263.1 CDS EcDH1_1301 NC_017625.1 1404097 1404585 D KEGG: set:SEN1951 phage protein; phage protein 1404097..1404585 Escherichia coli DH1 12704892 YP_006091264.1 CDS EcDH1_1302 NC_017625.1 1404585 1404860 D TIGRFAM: phage N-6-adenine-methyltransferase; PFAM: DNA N-6-adenine-methyltransferase; KEGG: sbc:SbBS512_E2156 phage N-6-adenine-methyltransferase; phage N-6-adenine-methyltransferase 1404585..1404860 Escherichia coli DH1 12704893 YP_006091265.1 CDS EcDH1_1303 NC_017625.1 1404826 1405428 D KEGG: sfx:S0319 hypothetical protein; hypothetical protein 1404826..1405428 Escherichia coli DH1 12704894 YP_006091266.1 CDS EcDH1_1304 NC_017625.1 1405455 1405895 D PFAM: tail assembly chaperone gp38; KEGG: stt:t3435 hypothetical protein; tail assembly chaperone gp38 1405455..1405895 Escherichia coli DH1 12704895 YP_006091267.1 CDS EcDH1_1305 NC_017625.1 1405867 1406211 R PFAM: tail assembly chaperone gp38; KEGG: stt:t3434 hypothetical protein; tail assembly chaperone gp38 complement(1405867..1406211) Escherichia coli DH1 12704896 YP_006091268.1 CDS EcDH1_1306 NC_017625.1 1406510 1407841 R KEGG: ckl:CKL_1571 hypothetical protein; hypothetical protein complement(1406510..1407841) Escherichia coli DH1 12704897 YP_006091269.1 CDS EcDH1_1307 NC_017625.1 1407838 1408758 R PFAM: glycosyl transferase family 2; KEGG: sfv:SFV_0257 putative bactoprenol glucosyl transferase; Ribonuclease III complement(1407838..1408758) Escherichia coli DH1 12704898 YP_006091270.1 CDS EcDH1_1308 NC_017625.1 1408755 1409117 R PFAM: GtrA family protein; KEGG: sfv:SFV_0258 bactoprenol-linked glucose translocase; GtrA family protein complement(1408755..1409117) Escherichia coli DH1 12704899 YP_006091271.1 CDS EcDH1_1309 NC_017625.1 1409270 1410427 R PFAM: integrase family protein; KEGG: ssn:SSON_2406 putative prophage Sf6-like integrase; integrase family protein complement(1409270..1410427) Escherichia coli DH1 12704900 YP_006091272.1 CDS EcDH1_1310 NC_017625.1 1410739 1411671 R PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2551 putative transport; formate/nitrite transporter complement(1410739..1411671) Escherichia coli DH1 12704902 YP_006091273.1 CDS EcDH1_1311 NC_017625.1 1411965 1412720 D PFAM: VacJ family lipoprotein; KEGG: sdy:SDY_2550 lipoprotein precursor; VacJ family lipoprotein 1411965..1412720 Escherichia coli DH1 12704903 YP_006091274.1 CDS EcDH1_1312 NC_017625.1 1412902 1413960 R KEGG: sfx:S2558 hypothetical protein; hypothetical protein complement(1412902..1413960) Escherichia coli DH1 12704904 YP_006091275.1 CDS EcDH1_1313 NC_017625.1 1414326 1415666 R PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: ssn:SSON_2400 long-chain fatty acid outer membrane transporter; aromatic hydrocarbon degradation membrane protein complement(1414326..1415666) Escherichia coli DH1 12704905 YP_006091276.1 CDS EcDH1_1314 NC_017625.1 1416038 1416322 D PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E2723 hypothetical protein; hypothetical protein 1416038..1416322 Escherichia coli DH1 12704906 YP_006091277.1 CDS EcDH1_1315 NC_017625.1 1416503 1417813 D KEGG: sbc:SbBS512_E2722 acetyl-CoA C-acyltransferase FadI; TIGRFAM: acetyl-CoA acetyltransferase; acetyl-CoA C-acyltransferase FadI; PFAM: Thiolase; acetyl-CoA C-acyltransferase FadI 1416503..1417813 Escherichia coli DH1 12704907 YP_006091278.1 CDS EcDH1_1316 NC_017625.1 1417813 1419957 D TIGRFAM: fatty acid oxidation complex, alpha subunit FadJ; PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E2721 fatty oxidation complex, alpha subunit FadJ; fatty acid oxidation complex subunit FadJ 1417813..1419957 Escherichia coli DH1 12704908 YP_006091279.1 CDS EcDH1_1317 NC_017625.1 1420160 1420645 D TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: sbc:SbBS512_E2719 phosphohistidine phosphatase SixA; phosphohistidine phosphatase, SixA 1420160..1420645 Escherichia coli DH1 12704909 YP_006091280.1 CDS EcDH1_1318 NC_017625.1 1421326 1421889 D PFAM: Fimbrial protein; KEGG: sfx:S2550 putative fimbrial-like protein; Fimbrial protein 1421326..1421889 Escherichia coli DH1 12704910 YP_006091281.1 CDS EcDH1_1320 NC_017625.1 1424636 1425388 D PFAM: Pili assembly chaperone, N-terminal; KEGG: sfv:SFV_2405 putative chaperone; Pili assembly chaperone, N-terminal 1424636..1425388 Escherichia coli DH1 12704912 YP_006091282.1 CDS EcDH1_1321 NC_017625.1 1425388 1425900 D KEGG: sbc:SbBS512_E2715 putative minor fimbrial subunit; putative minor fimbrial subunit 1425388..1425900 Escherichia coli DH1 12704913 YP_006091283.1 CDS EcDH1_1322 NC_017625.1 1425897 1426385 D KEGG: sdy:SDY_2533 hypothetical protein; hypothetical protein 1425897..1426385 Escherichia coli DH1 12704914 YP_006091284.1 CDS EcDH1_1323 NC_017625.1 1426382 1426921 D PFAM: Fimbrial protein; KEGG: sdy:SDY_2532 putative fimbrial-like protein; Fimbrial protein 1426382..1426921 Escherichia coli DH1 12704915 YP_006091285.1 CDS EcDH1_1324 NC_017625.1 1426923 1427744 D KEGG: ssn:SSON_2390 hypothetical protein; hypothetical protein 1426923..1427744 Escherichia coli DH1 12704916 YP_006091286.1 CDS EcDH1_1325 NC_017625.1 1427815 1428366 R PFAM: Smr protein/MutS2; KEGG: sbc:SbBS512_E2709 Smr domain protein; Smr protein/MutS2 complement(1427815..1428366) Escherichia coli DH1 12704917 YP_006091287.1 CDS EcDH1_1326 NC_017625.1 1428532 1429464 D KEGG: sfv:SFV_2400 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; HemK family modification methylase 1428532..1429464 Escherichia coli DH1 12704918 YP_006091288.1 CDS EcDH1_1327 NC_017625.1 1429499 1430584 D PFAM: chorismate synthase; KEGG: sdy:SDY_2528 chorismate synthase; Chorismate synthase 1429499..1430584 Escherichia coli DH1 12704919 YP_006091289.1 CDS EcDH1_1328 NC_017625.1 1430588 1431412 D PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: sfv:SFV_2397 penicillin-insensitive murein endopeptidase; peptidase U6 penicillin-insensitive murein endopeptidase 1430588..1431412 Escherichia coli DH1 12704920 YP_006091290.1 CDS EcDH1_1329 NC_017625.1 1431412 1432221 D PFAM: protein of unknown function DUF81; KEGG: sbc:SbBS512_E2705 hypothetical protein; hypothetical protein 1431412..1432221 Escherichia coli DH1 12704921 YP_006091291.1 CDS EcDH1_1330 NC_017625.1 1432221 1432769 D PFAM: protein of unknown function DUF462; KEGG: sdy:SDY_2525 putative transporting ATPase; hypothetical protein 1432221..1432769 Escherichia coli DH1 12704922 YP_006091292.1 CDS EcDH1_1331 NC_017625.1 1432803 1433081 D PFAM: YfcL protein; KEGG: sdy:SDY_2524 hypothetical protein; hypothetical protein 1432803..1433081 Escherichia coli DH1 12704923 YP_006091293.1 CDS EcDH1_1332 NC_017625.1 1433202 1435208 R TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: sbc:SbBS512_E2702 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC complement(1433202..1435208) Escherichia coli DH1 12704924 YP_006091294.1 CDS EcDH1_1333 NC_017625.1 1435367 1436587 D PFAM: Beta-ketoacyl synthase; KEGG: sbo:SBO_2360 3-oxoacyl-(acyl carrier protein) synthase I; Beta-ketoacyl synthase 1435367..1436587 Escherichia coli DH1 12704925 YP_006091295.1 CDS EcDH1_1334 NC_017625.1 1436852 1438030 D PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_2380 hypothetical protein; major facilitator superfamily protein 1436852..1438030 Escherichia coli DH1 12704926 YP_006091296.1 CDS EcDH1_1335 NC_017625.1 1438027 1439022 R KEGG: sbo:SBO_2358 predicted flagella assembly protein; flagella assembly protein complement(1438027..1439022) Escherichia coli DH1 12704927 YP_006091297.1 CDS EcDH1_1336 NC_017625.1 1439121 1440257 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E2698 erythronate-4-phosphate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region 1439121..1440257 Escherichia coli DH1 12704928 YP_006091298.1 CDS EcDH1_1337 NC_017625.1 1440323 1441336 D PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; KEGG: sdy:SDY_2518 hypothetical protein; Aspartate-semialdehyde dehydrogenase 1440323..1441336 Escherichia coli DH1 12704929 YP_006091299.1 CDS EcDH1_1338 NC_017625.1 1441336 1442148 D KEGG: sdy:SDY_2517 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1441336..1442148 Escherichia coli DH1 12704930 YP_006091300.1 CDS EcDH1_1339 NC_017625.1 1442231 1442890 D PFAM: SNARE associated Golgi protein; KEGG: sfv:SFV_2386 hypothetical protein; hypothetical protein 1442231..1442890 Escherichia coli DH1 12704931 YP_006091301.1 CDS EcDH1_1340 NC_017625.1 1443046 1443960 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: ssn:SSON_2374 acetyl-CoA carboxylase subunit beta; acetyl-CoA carboxylase, carboxyl transferase subunit beta 1443046..1443960 Escherichia coli DH1 12704932 YP_006091302.1 CDS EcDH1_1341 NC_017625.1 1444030 1445298 D TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfv:SFV_2384 bifunctional folylpolyglutamate synthase/dihydrofolate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1444030..1445298 Escherichia coli DH1 12704933 YP_006091303.1 CDS EcDH1_1342 NC_017625.1 1445288 1445950 D PFAM: Sporulation domain protein; KEGG: sbc:SbBS512_E2692 sporulation and cell division repeat protein; Phosphogluconate dehydratase 1445288..1445950 Escherichia coli DH1 12704934 YP_006091304.1 CDS EcDH1_1343 NC_017625.1 1446209 1446697 D PFAM: Colicin V production protein; colicin V production protein 1446209..1446697 Escherichia coli DH1 12704935 YP_006091305.1 CDS EcDH1_1344 NC_017625.1 1446734 1448251 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: sbc:SbBS512_E2690 amidophosphoribosyltransferase; amidophosphoribosyltransferase 1446734..1448251 Escherichia coli DH1 12704936 YP_006091306.1 CDS EcDH1_1345 NC_017625.1 1448346 1448915 D TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: sdy:SDY_2510 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1448346..1448915 Escherichia coli DH1 12704937 YP_006091307.1 CDS EcDH1_1346 NC_017625.1 1449181 1449963 D TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2688 lysine-arginine-ornithine-binding periplasmic protein; cationic amino acid ABC transporter substrate-binding protein 1449181..1449963 Escherichia coli DH1 12704938 YP_006091308.1 CDS EcDH1_1347 NC_017625.1 1450184 1450966 D TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; KEGG: sbc:SbBS512_E2687 histidine ABC transporter, periplasmic histidine-binding protein; cationic amino acid ABC transporter substrate-binding protein 1450184..1450966 Escherichia coli DH1 12704939 YP_006091309.1 CDS EcDH1_1348 NC_017625.1 1451056 1451742 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_2507 histidine transport system permease protein; polar amino acid ABC transporter inner membrane subunit 1451056..1451742 Escherichia coli DH1 12704940 YP_006091310.1 CDS EcDH1_1349 NC_017625.1 1451739 1452455 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_2506 histidine transport, membrane protein M; polar amino acid ABC transporter inner membrane subunit 1451739..1452455 Escherichia coli DH1 12704941 YP_006091311.1 CDS EcDH1_1350 NC_017625.1 1452463 1453236 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2684 histidine ABC transporter, ATP-binding protein; ABC transporter 1452463..1453236 Escherichia coli DH1 12704942 YP_006091312.1 CDS EcDH1_1351 NC_017625.1 1453433 1454323 D PFAM: putative transposase YhgA family protein; KEGG: sfv:SFV_2372 hypothetical protein; putative transposase YhgA family protein 1453433..1454323 Escherichia coli DH1 12704943 YP_006091313.1 CDS EcDH1_1352 NC_017625.1 1454371 1455264 R PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; domain of unknown function DUF1731; KEGG: sbo:SBO_2339 putative sugar nucleotide epimerase; hypothetical protein complement(1454371..1455264) Escherichia coli DH1 12704944 YP_006091314.1 CDS EcDH1_1353 NC_017625.1 1455285 1455647 R PFAM: dihydroneopterin aldolase; KEGG: sdy:SDY_2500 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; dihydroneopterin aldolase complement(1455285..1455647) Escherichia coli DH1 12704945 YP_006091315.1 CDS EcDH1_1354 NC_017625.1 1455704 1456351 R PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E2678 glutathione S-transferase; glutathione S-transferase complement(1455704..1456351) Escherichia coli DH1 12704946 YP_006091316.1 CDS EcDH1_1355 NC_017625.1 1456487 1457131 D PFAM: Glutathione S-transferase domain; KEGG: sbc:SbBS512_E2677 glutathione S-transferase domain protein; glutathione S-transferase 1456487..1457131 Escherichia coli DH1 12704947 YP_006091317.1 CDS EcDH1_1356 NC_017625.1 1457187 1457738 D TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sbc:SbBS512_E2676 phosphodiesterase, YfcE family; phosphodiesterase 1457187..1457738 Escherichia coli DH1 12704948 YP_006091318.1 CDS EcDH1_1357 NC_017625.1 1457796 1458338 D PFAM: NUDIX hydrolase; KEGG: sbc:SbBS512_E2675 hydrolase, NUDIX family protein; NUDIX hydrolase 1457796..1458338 Escherichia coli DH1 12704949 YP_006091319.1 CDS EcDH1_1358 NC_017625.1 1458371 1459849 R PFAM: C4-dicarboxylate anaerobic carrier; KEGG: sdy:SDY_2494 hypothetical protein; C4-dicarboxylate anaerobic carrier complement(1458371..1459849) Escherichia coli DH1 12704950 YP_006091320.1 CDS EcDH1_1359 NC_017625.1 1460081 1462225 R KEGG: sbc:SbBS512_E2673 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; DRTGG domain protein; phosphate acetyltransferase complement(1460081..1462225) Escherichia coli DH1 12704951 YP_006091321.1 CDS EcDH1_1360 NC_017625.1 1462300 1463502 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: sbc:SbBS512_E2672 acetate kinase; acetate kinase complement(1462300..1463502) Escherichia coli DH1 12704952 YP_006091322.1 CDS EcDH1_1361 NC_017625.1 1463840 1464295 D PFAM: protein of unknown function DUF412; KEGG: sdy:SDY_2491 hypothetical protein; hypothetical protein 1463840..1464295 Escherichia coli DH1 12704953 YP_006091323.1 CDS EcDH1_1362 NC_017625.1 1464378 1464872 D PFAM: YfbU family protein; KEGG: sdy:SDY_2490 hypothetical protein; YfbU family protein 1464378..1464872 Escherichia coli DH1 12704954 YP_006091324.1 CDS EcDH1_1363 NC_017625.1 1464883 1465533 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfv:SFV_2360 putative phosphatase; HAD-superfamily hydrolase 1464883..1465533 Escherichia coli DH1 12704955 YP_006091325.1 CDS EcDH1_1364 NC_017625.1 1465620 1467452 D PFAM: Citrate transporter; TrkA-C domain protein; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ssn:SSON_2349 putative transport protein; citrate transporter 1465620..1467452 Escherichia coli DH1 12704956 YP_006091326.1 CDS EcDH1_1365 NC_017625.1 1467511 1468110 R KEGG: sfv:SFV_2358 hypothetical protein; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase complement(1467511..1468110) Escherichia coli DH1 12704957 YP_006091327.1 CDS EcDH1_1366 NC_017625.1 1468194 1469411 R PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E2666 aminotransferase, classes I and II; class I and II aminotransferase complement(1468194..1469411) Escherichia coli DH1 12704958 YP_006091328.1 CDS EcDH1_1367 NC_017625.1 1470331 1471269 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E2665 transcriptional regulator LrhA; LysR family transcriptional regulator 1470331..1471269 Escherichia coli DH1 12704959 YP_006091329.1 CDS EcDH1_1368 NC_017625.1 1471473 1471637 R hypothetical protein complement(1471473..1471637) Escherichia coli DH1 12704960 YP_006091330.1 CDS EcDH1_1369 NC_017625.1 1471900 1472343 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: sdy:SDY_2484 NADH dehydrogenase subunit A; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 1471900..1472343 Escherichia coli DH1 12704961 YP_006091331.1 CDS EcDH1_1370 NC_017625.1 1472359 1473021 D KEGG: sbc:SbBS512_E2663 NADH-quinone oxidoreductase, B subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B 1472359..1473021 Escherichia coli DH1 12704962 YP_006091332.1 CDS EcDH1_1371 NC_017625.1 1473115 1474917 D TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: sdy:SDY_2482 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; NADH dehydrogenase I subunit D 1473115..1474917 Escherichia coli DH1 12704963 YP_006091333.1 CDS EcDH1_1372 NC_017625.1 1474920 1475420 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: sbc:SbBS512_E2661 NADH-quinone oxidoreductase, E subunit; NADH-quinone oxidoreductase subunit E 1474920..1475420 Escherichia coli DH1 12704964 YP_006091334.1 CDS EcDH1_1373 NC_017625.1 1475417 1476754 D KEGG: sdy:SDY_2480 NADH dehydrogenase I subunit F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; NADH-quinone oxidoreductase subunit F 1475417..1476754 Escherichia coli DH1 12704965 YP_006091335.1 CDS EcDH1_1374 NC_017625.1 1476807 1479533 D TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; NADH-quinone oxidoreductase chain G; KEGG: sbo:SBO_2316 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G 1476807..1479533 Escherichia coli DH1 12704966 YP_006091336.1 CDS EcDH1_1375 NC_017625.1 1479530 1480507 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: sdy:SDY_2478 NADH dehydrogenase subunit H; NADH dehydrogenase (quinone) 1479530..1480507 Escherichia coli DH1 12704967 YP_006091337.1 CDS EcDH1_1376 NC_017625.1 1480522 1481064 D TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2657 NADH-quinone oxidoreductase, I subunit; NADH-quinone oxidoreductase subunit I 1480522..1481064 Escherichia coli DH1 12704968 YP_006091338.1 CDS EcDH1_1377 NC_017625.1 1481076 1481630 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: sdy:SDY_2476 NADH dehydrogenase subunit J; NADH dehydrogenase (quinone) 1481076..1481630 Escherichia coli DH1 12704969 YP_006091339.1 CDS EcDH1_1378 NC_017625.1 1481627 1481929 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: cko:CKO_00517 NADH dehydrogenase subunit K; NADH-ubiquinone oxidoreductase chain 4L 1481627..1481929 Escherichia coli DH1 12704970 YP_006091340.1 CDS EcDH1_1379 NC_017625.1 1481926 1483767 D KEGG: sfv:SFV_2345 NADH dehydrogenase subunit L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1481926..1483767 Escherichia coli DH1 12704971 YP_006091341.1 CDS EcDH1_1380 NC_017625.1 1483931 1485460 D KEGG: sfv:SFV_2344 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1483931..1485460 Escherichia coli DH1 12704972 YP_006091342.1 CDS EcDH1_1381 NC_017625.1 1485467 1486924 D KEGG: sfx:S2487 NADH dehydrogenase subunit N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase, chain N 1485467..1486924 Escherichia coli DH1 12704973 YP_006091343.1 CDS EcDH1_1382 NC_017625.1 1487008 1487856 R hypothetical protein complement(1487008..1487856) Escherichia coli DH1 12704974 YP_006091344.1 CDS EcDH1_1383 NC_017625.1 1487915 1488337 R KEGG: rpe:RPE_3539 hypothetical protein; hypothetical protein complement(1487915..1488337) Escherichia coli DH1 12704975 YP_006091345.1 CDS EcDH1_1384 NC_017625.1 1488546 1489262 D KEGG: pfl:PFL_6130 hypothetical protein; hypothetical protein 1488546..1489262 Escherichia coli DH1 12704976 YP_006091346.1 CDS EcDH1_1385 NC_017625.1 1489535 1490038 R PFAM: Domain of unknown function DUF1877; KEGG: sdy:SDY_2471 hypothetical protein; hypothetical protein complement(1489535..1490038) Escherichia coli DH1 12704977 YP_006091347.1 CDS EcDH1_1386 NC_017625.1 1490141 1491112 R PFAM: peptidase M28; KEGG: sfu:Sfum_3053 peptidase M28; peptidase M28 complement(1490141..1491112) Escherichia coli DH1 12704978 YP_006091348.1 CDS EcDH1_1387 NC_017625.1 1491250 1492977 D PFAM: von Willebrand factor type A; KEGG: set:SEN2297 lipoprotein; von Willebrand factor type A 1491250..1492977 Escherichia coli DH1 12704979 YP_006091349.1 CDS EcDH1_1388 NC_017625.1 1493048 1494256 R PFAM: peptidase C48 SUMO/Sentrin/Ubl1; KEGG: ses:SARI_00605 deubiquitinase; peptidase C48 SUMO/Sentrin/Ubl1 complement(1493048..1494256) Escherichia coli DH1 12704980 YP_006091350.1 CDS EcDH1_1389 NC_017625.1 1494447 1495382 R TIGRFAM: ribonuclease BN; ribonuclease Z; PFAM: beta-lactamase domain protein; KEGG: sfv:SFV_2339 ribonuclease Z; ribonuclease BN complement(1494447..1495382) Escherichia coli DH1 12704981 YP_006091351.1 CDS EcDH1_1390 NC_017625.1 1495429 1495890 D PFAM: GCN5-related N-acetyltransferase; KEGG: sfv:SFV_2338 hypothetical protein; N-acetyltransferase GCN5 1495429..1495890 Escherichia coli DH1 12704982 YP_006091352.1 CDS EcDH1_1391 NC_017625.1 1495945 1496250 D PFAM: protein of unknown function DUF883 ElaB; KEGG: sdy:SDY_2462 hypothetical protein; hypothetical protein 1495945..1496250 Escherichia coli DH1 12704983 YP_006091353.1 CDS EcDH1_1392 NC_017625.1 1496329 1497624 D TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: sfx:S2478 menaquinone-specific isochorismate synthase; isochorismate synthase 1496329..1497624 Escherichia coli DH1 12704984 YP_006091354.1 CDS EcDH1_1393 NC_017625.1 1497713 1499383 D KEGG: sfv:SFV_2335 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase 1497713..1499383 Escherichia coli DH1 12704985 YP_006091355.1 CDS EcDH1_1394 NC_017625.1 1499380 1500138 D PFAM: alpha/beta hydrolase fold; KEGG: sbo:SBO_2300 acyl-CoA thioester hydrolase YfbB; alpha/beta hydrolase fold protein 1499380..1500138 Escherichia coli DH1 12704986 YP_006091356.1 CDS EcDH1_1395 NC_017625.1 1500153 1501010 D TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sbc:SbBS512_E2641 naphthoate synthase; naphthoate synthase 1500153..1501010 Escherichia coli DH1 12704987 YP_006091357.1 CDS EcDH1_1396 NC_017625.1 1501010 1501972 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sdy:SDY_2457 O-succinylbenzoate synthase; mandelate racemase/muconate lactonizing protein 1501010..1501972 Escherichia coli DH1 12704988 YP_006091358.1 CDS EcDH1_1397 NC_017625.1 1501969 1503324 D TIGRFAM: O-succinylbenzoate-CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sdy:SDY_2456 O-succinylbenzoic acid--CoA ligase; o-succinylbenzoate--CoA ligase 1501969..1503324 Escherichia coli DH1 12704989 YP_006091359.1 CDS EcDH1_1398 NC_017625.1 1503434 1503700 D KEGG: ssn:SSON_2320 polymyxin resistance protein B; polymyxin resistance protein B 1503434..1503700 Escherichia coli DH1 12704990 YP_006091360.1 CDS EcDH1_1399 NC_017625.1 1503694 1504080 R KEGG: ssn:SSON_2319 hypothetical protein; hypothetical protein complement(1503694..1504080) Escherichia coli DH1 12704991 YP_006091361.1 CDS EcDH1_1400 NC_017625.1 1504080 1504415 R PFAM: small multidrug resistance protein; KEGG: sbc:SbBS512_E2634 multidrug resistance protein, SMR family; small multidrug resistance protein complement(1504080..1504415) Escherichia coli DH1 12704992 YP_006091362.1 CDS EcDH1_1401 NC_017625.1 1504412 1506064 R PFAM: glycosyl transferase family 39; KEGG: sbo:SBO_2294 4-amino-4-deoxy-L-arabinose transferase; glycosyl transferase family protein complement(1504412..1506064) Escherichia coli DH1 12704993 YP_006091363.1 CDS EcDH1_1402 NC_017625.1 1506064 1506954 R PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_2317 hypothetical protein; polysaccharide deacetylase complement(1506064..1506954) Escherichia coli DH1 12704994 YP_006091364.1 CDS EcDH1_1403 NC_017625.1 1506951 1508933 R PFAM: NAD-dependent epimerase/dehydratase; formyl transferase domain protein; KEGG: sbo:SBO_2292 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; NAD-dependent epimerase/dehydratase complement(1506951..1508933) Escherichia coli DH1 12704995 YP_006091365.1 CDS EcDH1_1404 NC_017625.1 1508933 1509901 R PFAM: glycosyl transferase family 2; KEGG: sbo:SBO_2291 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; family 2 glycosyl transferase complement(1508933..1509901) Escherichia coli DH1 12704996 YP_006091366.1 CDS EcDH1_1405 NC_017625.1 1509905 1511044 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sfv:SFV_2323 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(1509905..1511044) Escherichia coli DH1 12704997 YP_006091367.1 CDS EcDH1_1406 NC_017625.1 1511352 1511954 D PFAM: Phosphoglycerate mutase; KEGG: ssn:SSON_2313 protein induced by aluminum; phosphoglycerate mutase 1511352..1511954 Escherichia coli DH1 12704998 YP_006091368.1 CDS EcDH1_1407 NC_017625.1 1511993 1512418 R PFAM: NUDIX hydrolase; KEGG: sfv:SFV_2321 hypothetical protein; NUDIX hydrolase complement(1511993..1512418) Escherichia coli DH1 12704999 YP_006091369.1 CDS EcDH1_1408 NC_017625.1 1512697 1513239 D PFAM: YfaZ family protein; KEGG: ssn:SSON_2311 hypothetical protein; hypothetical protein 1512697..1513239 Escherichia coli DH1 12705000 YP_006091370.1 CDS EcDH1_1409 NC_017625.1 1513339 1514541 D TIGRFAM: molybdenum cofactor synthesis domain protein; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; KEGG: sfx:S2461 competence damage-inducible protein A; competence/damage-inducible protein CinA 1513339..1514541 Escherichia coli DH1 12705001 YP_006091371.1 CDS EcDH1_1410 NC_017625.1 1514761 1515543 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: ssn:SSON_2309 putative regulator; IclR family transcriptional regulator 1514761..1515543 Escherichia coli DH1 12705002 YP_006091372.1 CDS EcDH1_1411 NC_017625.1 1515558 1516763 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sbo:SBO_2047 putative racemase; mandelate racemase/muconate lactonizing protein 1515558..1516763 Escherichia coli DH1 12705003 YP_006091373.1 CDS EcDH1_1412 NC_017625.1 1516820 1518109 D PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_2048 putative transport protein; major facilitator superfamily protein 1516820..1518109 Escherichia coli DH1 12705004 YP_006091374.1 CDS EcDH1_1413 NC_017625.1 1518127 1518930 D PFAM: HpcH/HpaI aldolase; KEGG: ssn:SSON_2306 putative aldolase; 2-dehydro-3-deoxyglucarate aldolase 1518127..1518930 Escherichia coli DH1 12705005 YP_006091375.1 CDS EcDH1_1415 NC_017625.1 1519169 1520068 R PFAM: putative transposase YhgA family protein; KEGG: sbc:SbBS512_E2627 hypothetical protein; putative transposase YhgA family protein complement(1519169..1520068) Escherichia coli DH1 12705007 YP_006091376.1 CDS EcDH1_1416 NC_017625.1 1520261 1521451 R TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sfx:S2458 sn-glycerol-3-phosphate dehydrogenase subunit C; glycerol-3-phosphate dehydrogenase complement(1520261..1521451) Escherichia coli DH1 12705008 YP_006091377.1 CDS EcDH1_1417 NC_017625.1 1521448 1522707 R KEGG: ssn:SSON_2303 anaerobic glycerol-3-phosphate dehydrogenase subunit B; TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; glycerol-3-phosphate dehydrogenase complement(1521448..1522707) Escherichia coli DH1 12705009 YP_006091378.1 CDS EcDH1_1418 NC_017625.1 1522697 1524325 R TIGRFAM: glycerol-3-phosphate dehydrogenase, anaerobic, A subunit; PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sbc:SbBS512_E2623 anaerobic glycerol-3-phosphate dehydrogenase subunit, A; glycerol-3-phosphate dehydrogenase complement(1522697..1524325) Escherichia coli DH1 12705010 YP_006091379.1 CDS EcDH1_1419 NC_017625.1 1524598 1525956 D TIGRFAM: phosphoglycerate transporter; glycerol-3-phosphate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2622 glycerol-3-phosphate transporter; glycerol-3-phosphate transporter 1524598..1525956 Escherichia coli DH1 12705011 YP_006091380.1 CDS EcDH1_1420 NC_017625.1 1525961 1527037 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sbc:SbBS512_E2621 glycerophosphoryl diester phosphodiesterase GlpQ; glycerophosphoryl diester phosphodiesterase 1525961..1527037 Escherichia coli DH1 12705012 YP_006091381.1 CDS EcDH1_1421 NC_017625.1 1527079 1527285 R KEGG: sbc:SbBS512_E2620 hypothetical protein; hypothetical protein complement(1527079..1527285) Escherichia coli DH1 12705013 YP_006091382.1 CDS EcDH1_1422 NC_017625.1 1527500 1528150 D PFAM: lipopolysaccharide kinase; KEGG: sfv:SFV_2310 hypothetical protein; lipopolysaccharide kinase 1527500..1528150 Escherichia coli DH1 12705014 YP_006091383.1 CDS EcDH1_1423 NC_017625.1 1528204 1528458 R PFAM: ferredoxin; KEGG: sbc:SbBS512_E2616 2Fe-2S iron-sulfur cluster-binding protein; ferredoxin complement(1528204..1528458) Escherichia coli DH1 12705015 YP_006091384.1 CDS EcDH1_1424 NC_017625.1 1528458 1529639 R PFAM: ribonucleotide reductase; KEGG: sfv:SFV_2308 ribonucleotide-diphosphate reductase subunit beta; ribonucleoside-diphosphate reductase complement(1528458..1529639) Escherichia coli DH1 12705016 YP_006091385.1 CDS EcDH1_1425 NC_017625.1 1529822 1532107 R KEGG: ssn:SSON_2293 ribonucleotide-diphosphate reductase subunit alpha; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit domain protein; ribonucleoside-diphosphate reductase subunit alpha complement(1529822..1532107) Escherichia coli DH1 12705017 YP_006091386.1 CDS EcDH1_1426 NC_017625.1 1532851 1536555 D TIGRFAM: polymorphic outer membrane protein; outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Polymorphic membrane protein Chlamydia; Pertactin; Autotransporter beta- domain protein; KEGG: sdy:SDY_2425 putative ATP-binding component of a transport system; outer membrane autotransporter barrel domain-containing protein 1532851..1536555 Escherichia coli DH1 12705018 YP_006091387.1 CDS EcDH1_1427 NC_017625.1 1536683 1537405 R KEGG: sdy:SDY_2424 3-demethylubiquinone-9 3-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase complement(1536683..1537405) Escherichia coli DH1 12705019 YP_006091388.1 CDS EcDH1_1428 NC_017625.1 1537552 1540179 D KEGG: sbc:SbBS512_E2606 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 1537552..1540179 Escherichia coli DH1 12705020 YP_006091389.1 CDS EcDH1_1429 NC_017625.1 1540328 1542016 D KEGG: ssn:SSON_2288 hypothetical protein; hypothetical protein 1540328..1542016 Escherichia coli DH1 12705021 YP_006091390.1 CDS EcDH1_1430 NC_017625.1 1542013 1542636 D PFAM: protein of unknown function DUF1175; KEGG: sfv:SFV_2299 hypothetical protein; hypothetical protein 1542013..1542636 Escherichia coli DH1 12705022 YP_006091391.1 CDS EcDH1_1432 NC_017625.1 1547175 1548824 D KEGG: ssn:SSON_2285 hypothetical protein; hypothetical protein 1547175..1548824 Escherichia coli DH1 12705024 YP_006091392.1 CDS EcDH1_1433 NC_017625.1 1548829 1549605 D KEGG: sfv:SFV_2294 hypothetical protein; hypothetical protein 1548829..1549605 Escherichia coli DH1 12705025 YP_006091393.1 CDS EcDH1_1434 NC_017625.1 1549679 1550863 R KEGG: ssn:SSON_2283 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(1549679..1550863) Escherichia coli DH1 12705026 YP_006091394.1 CDS EcDH1_1435 NC_017625.1 1550894 1552216 R PFAM: short chain fatty acid transporter; KEGG: ssn:SSON_2282 short chain fatty acid transporter; short chain fatty acid transporter complement(1550894..1552216) Escherichia coli DH1 12705027 YP_006091395.1 CDS EcDH1_1436 NC_017625.1 1552213 1552863 R KEGG: ssn:SSON_2281 acetyl-CoA:acetoacetyl-CoA transferase beta subunit; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(1552213..1552863) Escherichia coli DH1 12705028 YP_006091396.1 CDS EcDH1_1437 NC_017625.1 1552863 1553525 R KEGG: ssn:SSON_2280 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(1552863..1553525) Escherichia coli DH1 12705029 YP_006091397.1 CDS EcDH1_1438 NC_017625.1 1553721 1555106 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: ssn:SSON_2279 acetoacetate metabolism regulatory protein AtoC; two component Fis family sigma54-specific transcriptional regulator complement(1553721..1555106) Escherichia coli DH1 12705030 YP_006091398.1 CDS EcDH1_1439 NC_017625.1 1555103 1556929 R KEGG: ssn:SSON_2278 sensory histidine kinase AtoS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB complement(1555103..1556929) Escherichia coli DH1 12705031 YP_006091399.1 CDS EcDH1_1440 NC_017625.1 1557096 1559945 D PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase; KEGG: ssn:SSON_2277 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; histidine kinase 1557096..1559945 Escherichia coli DH1 12705032 YP_006091400.1 CDS EcDH1_1441 NC_017625.1 1560145 1560795 R PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sdy:SDY_0857 DNA-binding response regulator in two-component regulatory system with RcsC and YojN; LuxR family two component transcriptional regulator complement(1560145..1560795) Escherichia coli DH1 12705033 YP_006091401.1 CDS EcDH1_1442 NC_017625.1 1560812 1563484 R PFAM: ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: sbo:SBO_2091 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Hpt sensor signal transduction histidine kinase complement(1560812..1563484) Escherichia coli DH1 12705034 YP_006091402.1 CDS EcDH1_1443 NC_017625.1 1564223 1565326 D PFAM: porin Gram-negative type; KEGG: sbo:SBO_2092 outer membrane porin protein C; porin 1564223..1565326 Escherichia coli DH1 12705035 YP_006091403.1 CDS EcDH1_1444 NC_017625.1 1565438 1566493 D PFAM: ApbE family lipoprotein; KEGG: sdy:SDY_0862 thiamine biosynthesis lipoprotein ApbE; ApbE family lipoprotein 1565438..1566493 Escherichia coli DH1 12705036 YP_006091404.1 CDS EcDH1_1445 NC_017625.1 1566567 1567631 D KEGG: sbc:SbBS512_E0727 regulatory protein Ada; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: helix-turn-helix- domain containing protein AraC type; Ada metal-binding domain protein; methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; AraC family transcriptional regulator 1566567..1567631 Escherichia coli DH1 12705037 YP_006091405.1 CDS EcDH1_1446 NC_017625.1 1567631 1568281 D TIGRFAM: alkylated DNA repair protein AlkB; PFAM: 2OG-Fe(II) oxygenase; KEGG: sbc:SbBS512_E0728 alkylated DNA repair protein AlkB; alkylated DNA repair protein AlkB 1567631..1568281 Escherichia coli DH1 12705038 YP_006091406.1 CDS EcDH1_1447 NC_017625.1 1568357 1570000 D KEGG: sbc:SbBS512_E0729 ABC transporter ATP-binding protein; TIGRFAM: cyclic peptide transporter; PFAM: ABC transporter related; SMART: AAA ATPase; cyclic peptide transporter 1568357..1570000 Escherichia coli DH1 12705039 YP_006091407.1 CDS EcDH1_1448 NC_017625.1 1570218 1571864 D KEGG: ssn:SSON_2268 malate:quinone oxidoreductase; TIGRFAM: malate/quinone oxidoreductase; PFAM: FAD dependent oxidoreductase; Malate:quinone-oxidoreductase; malate/quinone oxidoreductase 1570218..1571864 Escherichia coli DH1 12705040 YP_006091408.1 CDS EcDH1_1449 NC_017625.1 1572466 1572954 R PFAM: proteinase inhibitor I11 ecotin; KEGG: ssn:SSON_2267 ecotin precursor; proteinase inhibitor I11 ecotin complement(1572466..1572954) Escherichia coli DH1 12705041 YP_006091409.1 CDS EcDH1_1450 NC_017625.1 1573089 1573253 R KEGG: sbc:SbBS512_E0732 hypothetical protein; hypothetical protein complement(1573089..1573253) Escherichia coli DH1 12705042 YP_006091410.1 CDS EcDH1_1451 NC_017625.1 1573362 1573856 D TIGRFAM: ferredoxin-type protein NapF; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_2099 ferredoxin-type protein; ferredoxin-type protein NapF 1573362..1573856 Escherichia coli DH1 12705043 YP_006091411.1 CDS EcDH1_1452 NC_017625.1 1573846 1574109 D PFAM: NapD family protein; KEGG: sbc:SbBS512_E0734 NapD protein; NapD family protein 1573846..1574109 Escherichia coli DH1 12705044 YP_006091412.1 CDS EcDH1_1453 NC_017625.1 1574106 1576592 D TIGRFAM: periplasmic nitrate reductase, large subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; periplasmic nitrate reductase large subunit; KEGG: ssn:SSON_2264 probable nitrate reductase 3; periplasmic nitrate reductase, large subunit 1574106..1576592 Escherichia coli DH1 12705045 YP_006091413.1 CDS EcDH1_1454 NC_017625.1 1576599 1577294 D TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_0873 quinol dehydrogenase periplasmic component; MauM/NapG family ferredoxin-type protein 1576599..1577294 Escherichia coli DH1 12705046 YP_006091414.1 CDS EcDH1_1455 NC_017625.1 1577281 1578144 D TIGRFAM: ferredoxin-type protein, NapH/MauN family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfv:SFV_2280 quinol dehydrogenase membrane component; ferredoxin-type protein, NapH/MauN family 1577281..1578144 Escherichia coli DH1 12705047 YP_006091415.1 CDS EcDH1_1456 NC_017625.1 1578141 1578590 D PFAM: Nitrate reductase cytochrome c-type subunit (NapB); KEGG: ssn:SSON_2261 diheme cytochrome c550; nitrate reductase cytochrome c-type subunit (NapB) 1578141..1578590 Escherichia coli DH1 12705048 YP_006091416.1 CDS EcDH1_1457 NC_017625.1 1578600 1579202 D TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein; KEGG: sbc:SbBS512_E0739 cytochrome c-type protein NapC; periplasmic nitrate (or nitrite) reductase c-type cytochrome 1578600..1579202 Escherichia coli DH1 12705049 YP_006091417.1 CDS EcDH1_1458 NC_017625.1 1579221 1579838 D KEGG: sbc:SbBS512_E0740 heme ABC exporter, ATP-binding protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 1579221..1579838 Escherichia coli DH1 12705050 YP_006091418.1 CDS EcDH1_1459 NC_017625.1 1579835 1580497 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: sdy:SDY_0878 heme exporter protein B; heme exporter protein CcmB 1579835..1580497 Escherichia coli DH1 12705051 YP_006091419.1 CDS EcDH1_1460 NC_017625.1 1580539 1581276 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: sdy:SDY_0879 heme exporter protein C; heme exporter protein CcmC 1580539..1581276 Escherichia coli DH1 12705052 YP_006091420.1 CDS EcDH1_1461 NC_017625.1 1581273 1581482 D TIGRFAM: heme exporter protein CcmD; PFAM: Heme exporter protein D (CcmD); KEGG: sdy:SDY_0880 heme exporter protein C; heme exporter protein CcmD 1581273..1581482 Escherichia coli DH1 12705053 YP_006091421.1 CDS EcDH1_1462 NC_017625.1 1581479 1581958 D PFAM: CcmE/CycJ protein; KEGG: sdy:SDY_0881 cytochrome c-type biogenesis protein CcmE; CcmE/CycJ protein 1581479..1581958 Escherichia coli DH1 12705054 YP_006091422.1 CDS EcDH1_1463 NC_017625.1 1581955 1583898 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: sbo:SBO_2111 cytochrome c-type biogenesis protein; cytochrome c-type biogenesis protein CcmF 1581955..1583898 Escherichia coli DH1 12705055 YP_006091423.1 CDS EcDH1_1464 NC_017625.1 1583895 1584452 D TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sbc:SbBS512_E0746 thiol:disulfide interchange protein DsbE; periplasmic protein thiol/disulfide oxidoreductase DsbE 1583895..1584452 Escherichia coli DH1 12705056 YP_006091424.1 CDS EcDH1_1465 NC_017625.1 1584449 1585501 D PFAM: cytochrome C biogenesis protein; KEGG: sfv:SFV_2270 subunit of heme lyase; cytochrome C biogenesis protein 1584449..1585501 Escherichia coli DH1 12705057 YP_006091425.1 CDS EcDH1_1466 NC_017625.1 1585712 1586359 R PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sdy:SDY_0885 DNA-binding response regulator in two-component regulatory system with NarQ or NarX; LuxR family two component transcriptional regulator complement(1585712..1586359) Escherichia coli DH1 12705058 YP_006091426.1 CDS EcDH1_1467 NC_017625.1 1586814 1587794 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 1586814..1587794 Escherichia coli DH1 12705059 YP_006091427.1 CDS EcDH1_1468 NC_017625.1 1587959 1590469 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfx:S2406 putative ATP-binding component of a transport system; outer membrane autotransporter barrel domain-containing protein 1587959..1590469 Escherichia coli DH1 12705060 YP_006091428.1 CDS EcDH1_1469 NC_017625.1 1590723 1592483 R PFAM: sulfatase; KEGG: ssn:SSON_2244 putative sulfatase; sulfatase complement(1590723..1592483) Escherichia coli DH1 12705062 YP_006091429.1 CDS EcDH1_1470 NC_017625.1 1592503 1592730 R PFAM: protein of unknown function DUF1414; KEGG: sbc:SbBS512_E0770 hypothetical protein; hypothetical protein complement(1592503..1592730) Escherichia coli DH1 12705063 YP_006091430.1 CDS EcDH1_1471 NC_017625.1 1592912 1593919 D PFAM: 37kDa nucleoid-associated protein; KEGG: sdy:SDY_0893 nucleoid-associated protein NdpA; 37kDa nucleoid-associated protein 1592912..1593919 Escherichia coli DH1 12705064 YP_006091431.1 CDS EcDH1_1472 NC_017625.1 1594058 1594342 R PFAM: ribosomal protein L25; KEGG: sdy:SDY_0894 50S ribosomal protein L25; 50S ribosomal protein L25 complement(1594058..1594342) Escherichia coli DH1 12705065 YP_006091432.1 CDS EcDH1_1473 NC_017625.1 1594467 1596227 R PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sdy:SDY_0895 putative ATP-dependent helicase; type III restriction protein res subunit complement(1594467..1596227) Escherichia coli DH1 12705066 YP_006091433.1 CDS EcDH1_1474 NC_017625.1 1596376 1597071 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sbo:SBO_2141 16S rRNA pseudouridylate synthase A; pseudouridine synthase 1596376..1597071 Escherichia coli DH1 12705067 YP_006091434.1 CDS EcDH1_1475 NC_017625.1 1597099 1598289 D TIGRFAM: multidrug/H+ antiporter, major facilitator superfamily (MFS); drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S2398 bicyclomycin/multidrug efflux system; Bcr/CflA family multidrug resistance transporter 1597099..1598289 Escherichia coli DH1 12705068 YP_006091435.1 CDS EcDH1_1476 NC_017625.1 1598622 1598966 D KEGG: sdy:SDY_0898 hypothetical protein; hypothetical protein 1598622..1598966 Escherichia coli DH1 12705069 YP_006091436.1 CDS EcDH1_1477 NC_017625.1 1598970 1600559 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0899 putative ATP-binding component of a transport system; ABC transporter complement(1598970..1600559) Escherichia coli DH1 12705070 YP_006091437.1 CDS EcDH1_1478 NC_017625.1 1600561 1601586 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_2145 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(1600561..1601586) Escherichia coli DH1 12705071 YP_006091438.1 CDS EcDH1_1479 NC_017625.1 1601586 1602680 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_2234 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(1601586..1602680) Escherichia coli DH1 12705072 YP_006091439.1 CDS EcDH1_1480 NC_017625.1 1602681 1604495 R PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_2233 hypothetical protein; family 5 extracellular solute-binding protein complement(1602681..1604495) Escherichia coli DH1 12705073 YP_006091440.1 CDS EcDH1_1481 NC_017625.1 1604577 1606133 R PFAM: EAL domain protein; KEGG: sbc:SbBS512_E0782 putative cyclic diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(1604577..1606133) Escherichia coli DH1 12705074 YP_006091441.1 CDS EcDH1_1482 NC_017625.1 1606314 1606880 R PFAM: NLP/P60 protein; KEGG: sdy:SDY_0904 putative lipoprotein; NLP/P60 protein complement(1606314..1606880) Escherichia coli DH1 12705075 YP_006091442.1 CDS EcDH1_1483 NC_017625.1 1607292 1608005 R PFAM: phosphoesterase PA-phosphatase related; KEGG: sdy:SDY_0905 hypothetical protein; phosphoesterase PA-phosphatase-like protein complement(1607292..1608005) Escherichia coli DH1 12705076 YP_006091443.1 CDS EcDH1_1484 NC_017625.1 1608044 1609030 R PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E0785 CobW/P47K family protein; cobalamin synthesis protein P47K complement(1608044..1609030) Escherichia coli DH1 12705077 YP_006091444.1 CDS EcDH1_1485 NC_017625.1 1609148 1610614 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ssn:SSON_2228 putative oxidoreductase; mannitol dehydrogenase domain-containing protein complement(1609148..1610614) Escherichia coli DH1 12705078 YP_006091445.1 CDS EcDH1_1486 NC_017625.1 1610837 1611409 R TIGRFAM: elongation factor P-like protein YeiP; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: sdy:SDY_0908 elongation factor P; elongation factor P-like protein YeiP complement(1610837..1611409) Escherichia coli DH1 12705079 YP_006091446.1 CDS EcDH1_1487 NC_017625.1 1611564 1611818 D PFAM: protein of unknown function UPF0153; KEGG: sbc:SbBS512_E0791 hypothetical protein; hypothetical protein 1611564..1611818 Escherichia coli DH1 12705080 YP_006091447.1 CDS EcDH1_1488 NC_017625.1 1611815 1612996 R TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E0792 sugar efflux transporter B; sugar efflux transporter complement(1611815..1612996) Escherichia coli DH1 12705081 YP_006091448.1 CDS EcDH1_1489 NC_017625.1 1613364 1614494 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; KEGG: ssn:SSON_2225 fructose-specific PTS IIA/HPr components; phosphocarrier, Hpr family 1613364..1614494 Escherichia coli DH1 12705082 YP_006091449.1 CDS EcDH1_1490 NC_017625.1 1614494 1615432 D KEGG: sdy:SDY_2316 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; 1-phosphofructokinase 1614494..1615432 Escherichia coli DH1 12705083 YP_006091450.1 CDS EcDH1_1491 NC_017625.1 1615449 1617140 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbc:SbBS512_E0796 PTS system, fructose-specific, IIBC component; PTS system fructose subfamily transporter subunit IIC 1615449..1617140 Escherichia coli DH1 12705084 YP_006091451.1 CDS EcDH1_1492 NC_017625.1 1617563 1618504 D PFAM: PfkB domain protein; KEGG: sfv:SFV_2241 hypothetical protein; PfkB domain-containing protein 1617563..1618504 Escherichia coli DH1 12705085 YP_006091452.1 CDS EcDH1_1493 NC_017625.1 1618492 1619430 D PFAM: Indigoidine synthase A family protein; KEGG: sfv:SFV_2240 hypothetical protein; Indigoidine synthase A family protein 1618492..1619430 Escherichia coli DH1 12705086 YP_006091453.1 CDS EcDH1_1494 NC_017625.1 1619524 1620774 D TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sbc:SbBS512_E0801 nucleoside transporter, NupC family; nucleoside transporter 1619524..1620774 Escherichia coli DH1 12705087 YP_006091454.1 CDS EcDH1_1495 NC_017625.1 1620845 1621543 R PFAM: cyclic nucleotide-binding; KEGG: ssn:SSON_2219 DNA-binding transcriptional activator of stationary phase nitrogen survival; cyclic nucleotide-binding protein complement(1620845..1621543) Escherichia coli DH1 12705088 YP_006091455.1 CDS EcDH1_1496 NC_017625.1 1621673 1622614 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ssn:SSON_2218 ribonucleoside hydrolase 2; inosine/uridine-preferring nucleoside hydrolase 1621673..1622614 Escherichia coli DH1 12705089 YP_006091456.1 CDS EcDH1_1497 NC_017625.1 1622714 1623964 D TIGRFAM: nucleoside transporter; PFAM: Na+ dependent nucleoside transporter; nucleoside recognition domain protein; Na+ dependent nucleoside transporter domain protein; KEGG: sdy:SDY_2105 putative transport system permease protein; nucleoside transporter 1622714..1623964 Escherichia coli DH1 12705090 YP_006091457.1 CDS EcDH1_1498 NC_017625.1 1624071 1625159 R PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E0806 kinase, PfkB family; PfkB domain-containing protein complement(1624071..1625159) Escherichia coli DH1 12705091 YP_006091458.1 CDS EcDH1_1499 NC_017625.1 1625162 1626019 R KEGG: sdy:SDY_2107 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 complement(1625162..1626019) Escherichia coli DH1 12705092 YP_006091459.1 CDS EcDH1_1500 NC_017625.1 1626093 1627142 R PFAM: conserved hypothetical protein; KEGG: sbo:SBO_2169 hypothetical protein; hypothetical protein complement(1626093..1627142) Escherichia coli DH1 12705093 YP_006091460.1 CDS EcDH1_1501 NC_017625.1 1627316 1628122 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2213 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 1627316..1628122 Escherichia coli DH1 12705094 YP_006091461.1 CDS EcDH1_1502 NC_017625.1 1628327 1629796 D PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2110 lysine transporter; amino acid permease 1628327..1629796 Escherichia coli DH1 12705095 YP_006091462.1 CDS EcDH1_1503 NC_017625.1 1630090 1632081 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_2211 ferric iron-catecholate outer membrane transporter; TonB-dependent receptor plug 1630090..1632081 Escherichia coli DH1 12705096 YP_006091463.1 CDS EcDH1_1504 NC_017625.1 1632113 1632949 R KEGG: sbc:SbBS512_E0812 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase complement(1632113..1632949) Escherichia coli DH1 12705097 YP_006091464.1 CDS EcDH1_1505 NC_017625.1 1633207 1633875 D PFAM: GTP cyclohydrolase I; KEGG: sdy:SDY_2127 GTP cyclohydrolase I; GTP cyclohydrolase I 1633207..1633875 Escherichia coli DH1 12705098 YP_006091465.1 CDS EcDH1_1506 NC_017625.1 1633892 1635049 D PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: sbc:SbBS512_E0814 hypothetical protein; hypothetical protein 1633892..1635049 Escherichia coli DH1 12705099 YP_006091466.1 CDS EcDH1_1507 NC_017625.1 1635191 1636231 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sfv:SFV_2226 DNA-binding transcriptional regulator GalS; LacI family transcriptional regulator 1635191..1636231 Escherichia coli DH1 12705100 YP_006091467.1 CDS EcDH1_1508 NC_017625.1 1636511 1637509 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sdy:SDY_2130 galactose-binding transport protein; periplasmic binding protein/LacI transcriptional regulator 1636511..1637509 Escherichia coli DH1 12705101 YP_006091468.1 CDS EcDH1_1509 NC_017625.1 1637570 1639090 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_2205 galactose/methyl galaxtoside transporter ATP-binding protein; ABC transporter 1637570..1639090 Escherichia coli DH1 12705102 YP_006091469.1 CDS EcDH1_1510 NC_017625.1 1639106 1640116 D PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E0823 galactose ABC transporter, permease protein; monosaccharide-transporting ATPase 1639106..1640116 Escherichia coli DH1 12705103 YP_006091470.1 CDS EcDH1_1511 NC_017625.1 1640359 1641594 R KEGG: ssn:SSON_2203 dihydropyrimidine dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; dihydroorotate dehydrogenase family protein complement(1640359..1641594) Escherichia coli DH1 12705104 YP_006091471.1 CDS EcDH1_1512 NC_017625.1 1641588 1642826 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sbo:SBO_0995 putative oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1641588..1642826) Escherichia coli DH1 12705105 YP_006091472.1 CDS EcDH1_1513 NC_017625.1 1643020 1643259 R KEGG: sbc:SbBS512_E0826 hypothetical protein; hypothetical protein complement(1643020..1643259) Escherichia coli DH1 12705106 YP_006091473.1 CDS EcDH1_1514 NC_017625.1 1643262 1643981 R PFAM: protein of unknown function DUF218; KEGG: sdy:SDY_2143 hypothetical protein; hypothetical protein complement(1643262..1643981) Escherichia coli DH1 12705107 YP_006091474.1 CDS EcDH1_1515 NC_017625.1 1644131 1645015 R KEGG: sbc:SbBS512_E0828 cytidine deaminase; TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; Cytidine and deoxycytidylate deaminase zinc-binding domain protein; cytidine deaminase complement(1644131..1645015) Escherichia coli DH1 12705108 YP_006091475.1 CDS EcDH1_1516 NC_017625.1 1645145 1645840 R PFAM: LrgB family protein; KEGG: sbc:SbBS512_E0829 LrgB family protein; LrgB family protein complement(1645145..1645840) Escherichia coli DH1 12705109 YP_006091476.1 CDS EcDH1_1517 NC_017625.1 1645837 1646235 R PFAM: LrgA family protein; KEGG: sbo:SBO_1000 hypothetical protein; LrgA family protein complement(1645837..1646235) Escherichia coli DH1 12705110 YP_006091477.1 CDS EcDH1_1518 NC_017625.1 1646474 1647421 D PFAM: dihydrouridine synthase DuS; KEGG: ssn:SSON_2196 tRNA-dihydrouridine synthase C; dihydrouridine synthase DuS 1646474..1647421 Escherichia coli DH1 12705111 YP_006091478.1 CDS EcDH1_1520 NC_017625.1 1649589 1650350 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbc:SbBS512_E0834 putative 3-oxoacyl-[acyl-carrier-protein] reductase; short-chain dehydrogenase/reductase SDR 1649589..1650350 Escherichia coli DH1 12705113 YP_006091479.1 CDS EcDH1_1521 NC_017625.1 1650480 1651058 R PFAM: SNARE associated Golgi protein; KEGG: sbc:SbBS512_E0835 hypothetical protein; hypothetical protein complement(1650480..1651058) Escherichia coli DH1 12705114 YP_006091480.1 CDS EcDH1_1522 NC_017625.1 1651228 1651815 D PFAM: protein of unknown function DUF1282; KEGG: sbo:SBO_1009 hypothetical protein; hypothetical protein 1651228..1651815 Escherichia coli DH1 12705115 YP_006091481.1 CDS EcDH1_1523 NC_017625.1 1651980 1652921 D PFAM: beta-lactamase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sdy:SDY_2154 D-alanyl-D-alanine endopeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 1651980..1652921 Escherichia coli DH1 12705116 YP_006091482.1 CDS EcDH1_1524 NC_017625.1 1652959 1654674 R PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase membrane binding; KEGG: sbc:SbBS512_E0839 D-lactate dehydrogenase; D-lactate dehydrogenase complement(1652959..1654674) Escherichia coli DH1 12705117 YP_006091483.1 CDS EcDH1_1525 NC_017625.1 1654870 1657167 D PFAM: glycoside hydrolase family 3 domain protein; KEGG: sbc:SbBS512_E0841 beta-glucosidase, periplasmic; glycoside hydrolase family protein 1654870..1657167 Escherichia coli DH1 12705118 YP_006091484.1 CDS EcDH1_1526 NC_017625.1 1657378 1658295 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sbo:SBO_1013 putative transport system permease protein; glycine betaine ABC transporter substrate-binding protein 1657378..1658295 Escherichia coli DH1 12705119 YP_006091485.1 CDS EcDH1_1527 NC_017625.1 1658302 1659459 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1014 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 1658302..1659459 Escherichia coli DH1 12705120 YP_006091486.1 CDS EcDH1_1528 NC_017625.1 1659452 1660378 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_2205 putative ATP-binding component of a transport system; ABC transporter 1659452..1660378 Escherichia coli DH1 12705121 YP_006091487.1 CDS EcDH1_1529 NC_017625.1 1660383 1661114 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E0845 ABC transporter, quaternary amine uptake (QAT) family, permease protein; binding-protein-dependent transport system inner membrane protein 1660383..1661114 Escherichia coli DH1 12705122 YP_006091488.1 CDS EcDH1_1530 NC_017625.1 1661095 1661202 R KEGG: sdy:SDY_2161 hypothetical protein; hypothetical protein complement(1661095..1661202) Escherichia coli DH1 12705123 YP_006091489.1 CDS EcDH1_1531 NC_017625.1 1661262 1661993 R PFAM: regulatory protein MerR; KEGG: sdy:SDY_2162 putative transcriptional regulator; MerR family transcriptional regulator complement(1661262..1661993) Escherichia coli DH1 12705124 YP_006091490.1 CDS EcDH1_1532 NC_017625.1 1662215 1663900 D PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: sfx:S2325 putative 2-component sensor protein; signal transduction histidine kinase LytS 1662215..1663900 Escherichia coli DH1 12705125 YP_006091491.1 CDS EcDH1_1533 NC_017625.1 1663897 1664616 D PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: sbo:SBO_0948 putative two-component response-regulatory protein YehT; LytTR family two component transcriptional regulator 1663897..1664616 Escherichia coli DH1 12705126 YP_006091492.1 CDS EcDH1_1534 NC_017625.1 1664663 1665133 D PFAM: protein of unknown function DUF1456; KEGG: sdy:SDY_2165 hypothetical protein; hypothetical protein 1664663..1665133 Escherichia coli DH1 12705127 YP_006091493.1 CDS EcDH1_1535 NC_017625.1 1665173 1665634 R PFAM: protein of unknown function DUF1307; KEGG: ssn:SSON_2169 hypothetical protein; hypothetical protein complement(1665173..1665634) Escherichia coli DH1 12705128 YP_006091494.1 CDS EcDH1_1536 NC_017625.1 1665915 1667759 R PFAM: zinc finger SWIM domain protein; KEGG: ssn:SSON_2168 hypothetical protein; zinc finger SWIM domain-containing protein complement(1665915..1667759) Escherichia coli DH1 12705129 YP_006091495.1 CDS EcDH1_1537 NC_017625.1 1667756 1668892 R PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: sbo:SBO_0944 hypothetical protein; VWA containing CoxE family protein complement(1667756..1668892) Escherichia coli DH1 12705130 YP_006091496.1 CDS EcDH1_1538 NC_017625.1 1668885 1671164 R KEGG: sbo:SBO_0943 hypothetical protein; hypothetical protein complement(1668885..1671164) Escherichia coli DH1 12705131 YP_006091497.1 CDS EcDH1_1539 NC_017625.1 1671175 1672263 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sfx:S2313 hypothetical protein; ATPase complement(1671175..1672263) Escherichia coli DH1 12705132 YP_006091498.1 CDS EcDH1_1540 NC_017625.1 1672570 1672887 R KEGG: sfl:SF2187 hypothetical protein; hypothetical protein complement(1672570..1672887) Escherichia coli DH1 12705133 YP_006091499.1 CDS EcDH1_1541 NC_017625.1 1672948 1676580 R KEGG: sbo:SBO_0938 putative regulator; putative regulator complement(1672948..1676580) Escherichia coli DH1 12705134 YP_006091500.1 CDS EcDH1_1543 NC_017625.1 1680526 1682559 R TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: sbo:SBO_0929 methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(1680526..1682559) Escherichia coli DH1 12705136 YP_006091501.1 CDS EcDH1_1544 NC_017625.1 1682691 1683800 D PFAM: Mrp protein; KEGG: sbc:SbBS512_E0855 mrp protein; Mrp protein 1682691..1683800 Escherichia coli DH1 12705137 YP_006091502.1 CDS EcDH1_1545 NC_017625.1 1684063 1684344 D KEGG: ssn:SSON_2161 hypothetical protein; hypothetical protein 1684063..1684344 Escherichia coli DH1 12705138 YP_006091503.1 CDS EcDH1_1546 NC_017625.1 1684637 1685179 D PFAM: Fimbrial protein; KEGG: ssn:SSON_2160 putative fimbrial-like protein; Fimbrial protein 1684637..1685179 Escherichia coli DH1 12705139 YP_006091504.1 CDS EcDH1_1547 NC_017625.1 1685259 1685933 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_2159 putative chaperone; Pili assembly chaperone, N-terminal 1685259..1685933 Escherichia coli DH1 12705140 YP_006091505.1 CDS EcDH1_1548 NC_017625.1 1685949 1688429 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_2164 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein 1685949..1688429 Escherichia coli DH1 12705141 YP_006091506.1 CDS EcDH1_1549 NC_017625.1 1688445 1689479 D KEGG: ssn:SSON_2156 putative type-1 fimbrial protein; putative type-1 fimbrial protein 1688445..1689479 Escherichia coli DH1 12705142 YP_006091507.1 CDS EcDH1_1550 NC_017625.1 1689561 1689899 R KEGG: sbc:SbBS512_E0850 hypothetical protein; hypothetical protein complement(1689561..1689899) Escherichia coli DH1 12705143 YP_006091508.1 CDS EcDH1_1551 NC_017625.1 1690118 1690942 R PFAM: high-affinity nickel-transporter; KEGG: ssn:SSON_2154 nickel/cobalt efflux protein RcnA; high-affinity nickel-transporter complement(1690118..1690942) Escherichia coli DH1 12705144 YP_006091509.1 CDS EcDH1_1552 NC_017625.1 1691063 1691335 D PFAM: protein of unknown function DUF156; KEGG: sdy:SDY_2279 hypothetical protein; hypothetical protein 1691063..1691335 Escherichia coli DH1 12705145 YP_006091510.1 CDS EcDH1_1553 NC_017625.1 1691558 1692346 D PFAM: hydroxyethylthiazole kinase; KEGG: sfv:SFV_2159 hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 1691558..1692346 Escherichia coli DH1 12705146 YP_006091511.1 CDS EcDH1_1554 NC_017625.1 1692343 1693143 D KEGG: sbc:SbBS512_E1135 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1692343..1693143 Escherichia coli DH1 12705147 YP_006091512.1 CDS EcDH1_1555 NC_017625.1 1693208 1694026 D PFAM: glycoside hydrolase family 25; KEGG: sbo:SBO_0923 hypothetical protein; glycoside hydrolase family protein 1693208..1694026 Escherichia coli DH1 12705148 YP_006091513.1 CDS EcDH1_1556 NC_017625.1 1694078 1694824 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sdy:SDY_2274 putative transcriptional regulator; GntR family transcriptional regulator 1694078..1694824 Escherichia coli DH1 12705149 YP_006091514.1 CDS EcDH1_1557 NC_017625.1 1694798 1695763 R PFAM: PfkB domain protein; KEGG: sbo:SBO_0921 putative kinase; PfkB domain-containing protein complement(1694798..1695763) Escherichia coli DH1 12705150 YP_006091515.1 CDS EcDH1_1558 NC_017625.1 1695760 1696764 R PFAM: ADP-ribosylation/Crystallin J1; KEGG: ssn:SSON_2147 hypothetical protein; ADP-ribosylation/Crystallin J1 complement(1695760..1696764) Escherichia coli DH1 12705151 YP_006091516.1 CDS EcDH1_1559 NC_017625.1 1696761 1698038 R TIGRFAM: nucleoside transporter; PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1140 nucleoside transporter; nucleoside transporter complement(1696761..1698038) Escherichia coli DH1 12705152 YP_006091517.1 CDS EcDH1_1560 NC_017625.1 1698295 1699347 D PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sdy:SDY_2270 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase 1698295..1699347 Escherichia coli DH1 12705153 YP_006091518.1 CDS EcDH1_1561 NC_017625.1 1699655 1700509 D KEGG: sbc:SbBS512_E1142 class II aldolase, tagatose bisphosphate family; TIGRFAM: ketose-bisphosphate aldolase; class II aldolase, tagatose bisphosphate family; PFAM: ketose-bisphosphate aldolase class-II; tagatose bisphosphate family class II aldolase 1699655..1700509 Escherichia coli DH1 12705154 YP_006091519.1 CDS EcDH1_1562 NC_017625.1 1700538 1701800 D KEGG: sbc:SbBS512_E1143 putative tagatose-6-phosphate kinase; TIGRFAM: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; PFAM: D-tagatose-bisphosphate aldolase class II accessory protein AgaZ; D-tagatose-bisphosphate aldolase non-catalytic subunit 1700538..1701800 Escherichia coli DH1 12705155 YP_006091520.1 CDS EcDH1_1563 NC_017625.1 1701810 1702262 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbo:SBO_0915 galactitol-specific PTS system component IIA; putative PTS IIA-like nitrogen-regulatory protein PtsN 1701810..1702262 Escherichia coli DH1 12705156 YP_006091521.1 CDS EcDH1_1565 NC_017625.1 1702647 1703627 R PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein complement(1702647..1703627) Escherichia coli DH1 12705158 YP_006091522.1 CDS EcDH1_1566 NC_017625.1 1703780 1705135 D TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; KEGG: sbc:SbBS512_E1146 PTS system, galactitol-specific IIC component; PTS system galactitol-specific transporter subunit IIC 1703780..1705135 Escherichia coli DH1 12705159 YP_006091523.1 CDS EcDH1_1567 NC_017625.1 1705183 1706223 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbo:SBO_0912 galactitol-1-phosphate dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 1705183..1706223 Escherichia coli DH1 12705160 YP_006091524.1 CDS EcDH1_1569 NC_017625.1 1706658 1707524 R PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit complement(1706658..1707524) Escherichia coli DH1 12705162 YP_006091525.1 CDS EcDH1_1570 NC_017625.1 1707521 1707820 R PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein complement(1707521..1707820) Escherichia coli DH1 12705163 YP_006091526.1 CDS EcDH1_1571 NC_017625.1 1708445 1709344 R PFAM: diacylglycerol kinase catalytic region; KEGG: sdy:SDY_2261 lipid kinase; diacylglycerol kinase catalytic subunit complement(1708445..1709344) Escherichia coli DH1 12705164 YP_006091527.1 CDS EcDH1_1572 NC_017625.1 1709750 1710067 D KEGG: sbo:SBO_0909 hypothetical protein; hypothetical protein 1709750..1710067 Escherichia coli DH1 12705165 YP_006091528.1 CDS EcDH1_1574 NC_017625.1 1710536 1710754 D PFAM: transcriptional activator Ogr/delta; KEGG: ent:Ent638_3475 DNA-binding transcriptional regulator; transcriptional activator Ogr/delta 1710536..1710754 Escherichia coli DH1 12705167 YP_006091529.1 CDS EcDH1_1575 NC_017625.1 1711027 1712388 R PFAM: peptidase U32; KEGG: sbc:SbBS512_E1150 peptidase, U32 family; peptidase U32 complement(1711027..1712388) Escherichia coli DH1 12705168 YP_006091530.1 CDS EcDH1_1576 NC_017625.1 1712535 1712867 R PFAM: protein of unknown function DUF1508; KEGG: sbc:SbBS512_E1153 hypothetical protein; hypothetical protein complement(1712535..1712867) Escherichia coli DH1 12705169 YP_006091531.1 CDS EcDH1_1577 NC_017625.1 1713058 1713780 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_2186 DNA-binding response regulator in two-component regulatory system with BaeS; winged helix family two component transcriptional regulator complement(1713058..1713780) Escherichia coli DH1 12705170 YP_006091532.1 CDS EcDH1_1578 NC_017625.1 1713777 1715180 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbc:SbBS512_E1155 sensor histidine kinase BaeS; histidine kinase complement(1713777..1715180) Escherichia coli DH1 12705171 YP_006091533.1 CDS EcDH1_1579 NC_017625.1 1715177 1716592 R PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1156 multidrug resistance protein MdtD; major facilitator superfamily protein complement(1715177..1716592) Escherichia coli DH1 12705172 YP_006091534.1 CDS EcDH1_1580 NC_017625.1 1716593 1719670 R PFAM: acriflavin resistance protein; KEGG: ssn:SSON_2128 multidrug efflux system subunit MdtC; acriflavin resistance protein complement(1716593..1719670) Escherichia coli DH1 12705173 YP_006091535.1 CDS EcDH1_1581 NC_017625.1 1719671 1722793 R PFAM: acriflavin resistance protein; KEGG: sbo:SBO_0901 multidrug efflux system subunit MdtB; acriflavin resistance protein complement(1719671..1722793) Escherichia coli DH1 12705174 YP_006091536.1 CDS EcDH1_1582 NC_017625.1 1722793 1724040 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E1159 multidrug resistance protein MdtA; RND family efflux transporter MFP subunit complement(1722793..1724040) Escherichia coli DH1 12705175 YP_006091537.1 CDS EcDH1_1583 NC_017625.1 1724210 1724356 R hypothetical protein complement(1724210..1724356) Escherichia coli DH1 12705176 YP_006091538.1 CDS EcDH1_1584 NC_017625.1 1724928 1725587 D PFAM: von Willebrand factor type A; KEGG: sbo:SBO_0899 hypothetical protein; von Willebrand factor type A 1724928..1725587 Escherichia coli DH1 12705177 YP_006091539.1 CDS EcDH1_1585 NC_017625.1 1725584 1726345 D KEGG: ssn:SSON_2124 hypothetical protein; hypothetical protein 1725584..1726345 Escherichia coli DH1 12705178 YP_006091540.1 CDS EcDH1_1586 NC_017625.1 1726410 1726871 R KEGG: mlo:mlr2620 hypothetical protein; hypothetical protein complement(1726410..1726871) Escherichia coli DH1 12705179 YP_006091541.1 CDS EcDH1_1587 NC_017625.1 1727071 1729017 D KEGG: ssn:SSON_2123 putative chaperonin; putative chaperonin 1727071..1729017 Escherichia coli DH1 12705180 YP_006091542.1 CDS EcDH1_1588 NC_017625.1 1729030 1730382 R KEGG: sfv:SFV_2130 putative chaperone; putative chaperone complement(1729030..1730382) Escherichia coli DH1 12705181 YP_006091543.1 CDS EcDH1_1589 NC_017625.1 1730516 1731364 D PFAM: HhH-GPD family protein; AlkA domain protein; KEGG: sdy:SDY_2194 3-methyl-adenine DNA glycosylase II; DNA-3-methyladenine glycosylase II 1730516..1731364 Escherichia coli DH1 12705182 YP_006091544.1 CDS EcDH1_1590 NC_017625.1 1731473 1734790 R KEGG: ssn:SSON_2120 putative sensor-type protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; MASE1 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1731473..1734790) Escherichia coli DH1 12705183 YP_006091545.1 CDS EcDH1_1591 NC_017625.1 1735108 1735749 D TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: sdy:SDY_2196 uridine kinase; uridine kinase 1735108..1735749 Escherichia coli DH1 12705184 YP_006091546.1 CDS EcDH1_1592 NC_017625.1 1735841 1736422 D KEGG: sbc:SbBS512_E1167 deoxycytidine triphosphate deaminase; TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; deoxycytidine triphosphate deaminase 1735841..1736422 Escherichia coli DH1 12705185 YP_006091547.1 CDS EcDH1_1593 NC_017625.1 1736444 1738297 D PFAM: AsmA family protein; KEGG: sbc:SbBS512_E1168 AsmA protein; AsmA family protein 1736444..1738297 Escherichia coli DH1 12705186 YP_006091548.1 CDS EcDH1_1594 NC_017625.1 1738571 1740154 R PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: sfv:SFV_2122 putative transport protein; integral membrane protein TerC complement(1738571..1740154) Escherichia coli DH1 12705187 YP_006091549.1 CDS EcDH1_1595 NC_017625.1 1740813 1741952 D PFAM: polysaccharide export protein; KEGG: sbc:SbBS512_E1170 polysaccharide biosynthesis/export protein; polysaccharide export protein 1740813..1741952 Escherichia coli DH1 12705188 YP_006091550.1 CDS EcDH1_1596 NC_017625.1 1741958 1742401 D PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: sbc:SbBS512_E1171 low molecular weight protein-tyrosine-phosphatase wzb; protein tyrosine phosphatase 1741958..1742401 Escherichia coli DH1 12705189 YP_006091551.1 CDS EcDH1_1597 NC_017625.1 1742404 1744566 D KEGG: sbc:SbBS512_E1172 tyrosine-protein kinase wzc; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 1742404..1744566 Escherichia coli DH1 12705190 YP_006091552.1 CDS EcDH1_1598 NC_017625.1 1744659 1745498 D PFAM: glycosyl transferase family 2; KEGG: sbo:SBO_0886 predicted glycosyl transferase; family 2 glycosyl transferase 1744659..1745498 Escherichia coli DH1 12705191 YP_006091553.1 CDS EcDH1_1599 NC_017625.1 1745501 1745989 D PFAM: transferase hexapeptide repeat containing protein; KEGG: ssn:SSON_2111 putative colanic acid biosynthesis acetyltransferase WcaB; transferase hexapeptide repeat containing protein 1745501..1745989 Escherichia coli DH1 12705192 YP_006091554.1 CDS EcDH1_1600 NC_017625.1 1745986 1747203 D KEGG: sbc:SbBS512_E1175 colanic acid biosynthesis glycosyl transferase WcaC; colanic acid biosynthesis glycosyl transferase WcaC 1745986..1747203 Escherichia coli DH1 12705193 YP_006091555.1 CDS EcDH1_1601 NC_017625.1 1747178 1748395 D KEGG: sbc:SbBS512_E1176 colanic acid polymerase WcaD; colanic acid polymerase WcaD 1747178..1748395 Escherichia coli DH1 12705194 YP_006091556.1 CDS EcDH1_1602 NC_017625.1 1748406 1749152 D PFAM: glycosyl transferase family 2; KEGG: sbc:SbBS512_E1177 colanic acid biosynthesis glycosyl transferase WcaE; family 2 glycosyl transferase 1748406..1749152 Escherichia coli DH1 12705195 YP_006091557.1 CDS EcDH1_1603 NC_017625.1 1749168 1749716 D PFAM: transferase hexapeptide repeat containing protein; KEGG: sbc:SbBS512_E1178 putative colanic acid biosynthesis acetyltransferase WcaF; transferase hexapeptide repeat containing protein 1749168..1749716 Escherichia coli DH1 12705196 YP_006091558.1 CDS EcDH1_1604 NC_017625.1 1749742 1750863 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: sbc:SbBS512_E1179 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 1749742..1750863 Escherichia coli DH1 12705197 YP_006091559.1 CDS EcDH1_1605 NC_017625.1 1750866 1751831 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2105 putative nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 1750866..1751831 Escherichia coli DH1 12705198 YP_006091560.1 CDS EcDH1_1606 NC_017625.1 1751831 1752313 D PFAM: NUDIX hydrolase; KEGG: ssn:SSON_2104 GDP-mannose mannosyl hydrolase; NUDIX hydrolase 1751831..1752313 Escherichia coli DH1 12705199 YP_006091561.1 CDS EcDH1_1607 NC_017625.1 1752310 1753533 D PFAM: glycosyl transferase group 1; KEGG: ssn:SSON_2103 predicted glycosyl transferase; group 1 glycosyl transferase 1752310..1753533 Escherichia coli DH1 12705200 YP_006091562.1 CDS EcDH1_1608 NC_017625.1 1753536 1754972 D KEGG: sbc:SbBS512_E1183 mannose-1-phosphate guanylyltransferase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1753536..1754972 Escherichia coli DH1 12705201 YP_006091563.1 CDS EcDH1_1609 NC_017625.1 1755077 1756447 D PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sbc:SbBS512_E1184 phosphomannomutase; phosphomannomutase 1755077..1756447 Escherichia coli DH1 12705202 YP_006091564.1 CDS EcDH1_1610 NC_017625.1 1756502 1757896 D KEGG: sbo:SBO_0874 putative UDP-glucose lipid carrier transferase; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase; undecaprenyl-phosphate glucose phosphotransferase 1756502..1757896 Escherichia coli DH1 12705203 YP_006091565.1 CDS EcDH1_1611 NC_017625.1 1757898 1759376 D PFAM: polysaccharide biosynthesis protein; KEGG: sbc:SbBS512_E1186 polysaccharide biosynthesis protein WzxC; polysaccharide biosynthesis protein 1757898..1759376 Escherichia coli DH1 12705204 YP_006091566.1 CDS EcDH1_1612 NC_017625.1 1759652 1760932 D PFAM: polysaccharide pyruvyl transferase; KEGG: sbo:SBO_0872 putative pyruvyl transferase; polysaccharide pyruvyl transferase 1759652..1760932 Escherichia coli DH1 12705205 YP_006091567.1 CDS EcDH1_1613 NC_017625.1 1760929 1762149 D PFAM: glycosyl transferase group 1; KEGG: sbo:SBO_0871 putative colanic acid biosynthesis glycosyl transferase; group 1 glycosyl transferase 1760929..1762149 Escherichia coli DH1 12705206 YP_006091568.1 CDS EcDH1_1614 NC_017625.1 1762160 1763554 D KEGG: sbo:SBO_0870 hypothetical protein; hypothetical protein 1762160..1763554 Escherichia coli DH1 12705207 YP_006091569.1 CDS EcDH1_1615 NC_017625.1 1763729 1764622 D KEGG: sbc:SbBS512_E1191 regulatory protein GalF; TIGRFAM: regulatory protein GalF; PFAM: Nucleotidyl transferase; regulatory protein GalF 1763729..1764622 Escherichia coli DH1 12705208 YP_006091570.1 CDS EcDH1_1616 NC_017625.1 1764995 1766080 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sbo:SBO_0868 dTDP-glucose 4,6 dehydratase; dTDP-glucose 4,6-dehydratase 1764995..1766080 Escherichia coli DH1 12705209 YP_006091571.1 CDS EcDH1_1617 NC_017625.1 1766080 1766937 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: sbc:SbBS512_E1193 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 1766080..1766937 Escherichia coli DH1 12705210 YP_006091572.1 CDS EcDH1_1618 NC_017625.1 1767036 1767917 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sbo:SBO_0866 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 1767036..1767917 Escherichia coli DH1 12705211 YP_006091573.1 CDS EcDH1_1619 NC_017625.1 1767917 1768474 D KEGG: sbc:SbBS512_E1195 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1767917..1768474 Escherichia coli DH1 12705212 YP_006091574.1 CDS EcDH1_1620 NC_017625.1 1768471 1769718 D PFAM: polysaccharide biosynthesis protein; KEGG: gka:GK3317 O-antigen transporter; polysaccharide biosynthesis protein 1768471..1769718 Escherichia coli DH1 12705213 YP_006091575.1 CDS EcDH1_1621 NC_017625.1 1769726 1770829 D KEGG: pin:Ping_2040 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like; UDP-galactopyranose mutase 1769726..1770829 Escherichia coli DH1 12705214 YP_006091576.1 CDS EcDH1_1622 NC_017625.1 1770829 1771995 D KEGG: spv:SPH_0463 polysaccharide polymerase Cps19aI; hypothetical protein 1770829..1771995 Escherichia coli DH1 12705215 YP_006091577.1 CDS EcDH1_1623 NC_017625.1 1771998 1772990 D KEGG: lsl:LSL_0694 hypothetical protein; hypothetical protein 1771998..1772990 Escherichia coli DH1 12705216 YP_006091578.1 CDS EcDH1_1624 NC_017625.1 1772971 1773561 D PFAM: transferase hexapeptide repeat containing protein; KEGG: rfr:Rfer_1258 transferase hexapeptide protein; transferase hexapeptide repeat containing protein 1772971..1773561 Escherichia coli DH1 12705217 YP_006091579.1 CDS EcDH1_1625 NC_017625.1 1773546 1774664 D PFAM: glycosyl transferase group 1; KEGG: rfr:Rfer_1259 glycosyl transferase, group 1; group 1 glycosyl transferase 1773546..1774664 Escherichia coli DH1 12705218 YP_006091580.1 CDS EcDH1_1627 NC_017625.1 1775180 1776160 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 1775180..1776160 Escherichia coli DH1 12705220 YP_006091581.1 CDS EcDH1_1628 NC_017625.1 1776787 1778193 D KEGG: sdy:SDY_2212 6-phosphogluconate dehydrogenase; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase 1776787..1778193 Escherichia coli DH1 12705221 YP_006091582.1 CDS EcDH1_1629 NC_017625.1 1778442 1779608 D KEGG: ssn:SSON_2099 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; nucleotide sugar dehydrogenase 1778442..1779608 Escherichia coli DH1 12705222 YP_006091583.1 CDS EcDH1_1630 NC_017625.1 1779754 1780734 D PFAM: lipopolysaccharide biosynthesis protein; KEGG: ssn:SSON_2098 regulator of length of O-antigen component of lipopolysaccharide chains; lipopolysaccharide biosynthesis protein 1779754..1780734 Escherichia coli DH1 12705223 YP_006091584.1 CDS EcDH1_1631 NC_017625.1 1780830 1781441 R TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ssn:SSON_2097 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; phosphoribosyl-ATP diphosphatase complement(1780830..1781441) Escherichia coli DH1 12705224 YP_006091585.1 CDS EcDH1_1632 NC_017625.1 1781435 1782211 R TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: sdy:SDY_2216 imidazole glycerol phosphate synthase subunit HisF; Imidazole glycerol phosphate synthase cyclase subunit complement(1781435..1782211) Escherichia coli DH1 12705225 YP_006091586.1 CDS EcDH1_1633 NC_017625.1 1782193 1782930 R TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; histidine biosynthesis protein; KEGG: sdy:SDY_2217 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase complement(1782193..1782930) Escherichia coli DH1 12705226 YP_006091587.1 CDS EcDH1_1634 NC_017625.1 1782930 1783520 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: sdy:SDY_2218 imidazole glycerol phosphate synthase subunit HisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(1782930..1783520) Escherichia coli DH1 12705227 YP_006091588.1 CDS EcDH1_1635 NC_017625.1 1783520 1784587 R KEGG: sbc:SbBS512_E1210 histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase; TIGRFAM: histidinol-phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: imidazoleglycerol-phosphate dehydratase; Polynucleotide kinase 3 phosphatase central region; histidinol-phosphatase complement(1783520..1784587) Escherichia coli DH1 12705228 YP_006091589.1 CDS EcDH1_1636 NC_017625.1 1784587 1785657 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E1211 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase complement(1784587..1785657) Escherichia coli DH1 12705229 YP_006091590.1 CDS EcDH1_1637 NC_017625.1 1785654 1786958 R PFAM: histidinol dehydrogenase; KEGG: sbc:SbBS512_E1212 histidinol dehydrogenase; histidinol dehydrogenase complement(1785654..1786958) Escherichia coli DH1 12705230 YP_006091591.1 CDS EcDH1_1638 NC_017625.1 1786964 1787863 R KEGG: sbc:SbBS512_E1213 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: Histidine biosynthesis protein HisG domain; ATP phosphoribosyltransferase catalytic region; ATP phosphoribosyltransferase complement(1786964..1787863) Escherichia coli DH1 12705231 YP_006091592.1 CDS EcDH1_1639 NC_017625.1 1788342 1788593 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sbc:SbBS512_E1214 antitoxin YefM; prevent-host-death family protein 1788342..1788593 Escherichia coli DH1 12705232 YP_006091593.1 CDS EcDH1_1640 NC_017625.1 1788590 1788844 D TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin Txe/YoeB; KEGG: sbc:SbBS512_E1215 toxin YoeB; Txe/YoeB family addiction module toxin 1788590..1788844 Escherichia coli DH1 12705233 YP_006091594.1 CDS EcDH1_1641 NC_017625.1 1788927 1789751 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: ssn:SSON_2086 putative enzyme of sugar metabolism; NAD-dependent epimerase/dehydratase 1788927..1789751 Escherichia coli DH1 12705234 YP_006091595.1 CDS EcDH1_1642 NC_017625.1 1789776 1790726 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2085 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 1789776..1790726 Escherichia coli DH1 12705235 YP_006091596.1 CDS EcDH1_1643 NC_017625.1 1790993 1792351 D PFAM: amino acid permease-associated region; KEGG: sdy:SDY_2226 putative amino acid/amine transport protein; amino acid permease 1790993..1792351 Escherichia coli DH1 12705236 YP_006091597.1 CDS EcDH1_1644 NC_017625.1 1792584 1793588 D PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: ssn:SSON_2083 putative transport system permease protein; hypothetical protein 1792584..1793588 Escherichia coli DH1 12705237 YP_006091598.1 CDS EcDH1_1645 NC_017625.1 1793602 1793829 D PFAM: SirA family protein; KEGG: sbc:SbBS512_E1220 hypothetical protein; SirA family protein 1793602..1793829 Escherichia coli DH1 12705238 YP_006091599.1 CDS EcDH1_1646 NC_017625.1 1793872 1795299 R KEGG: sbc:SbBS512_E1221 exodeoxyribonuclease I; PFAM: Exonuclease RNase T and DNA polymerase III; Exonuclease domain protein; SMART: Exonuclease; Exodeoxyribonuclease I complement(1793872..1795299) Escherichia coli DH1 12705239 YP_006091600.1 CDS EcDH1_1647 NC_017625.1 1795508 1796674 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: ssn:SSON_2080 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1795508..1796674 Escherichia coli DH1 12705240 YP_006091601.1 CDS EcDH1_1648 NC_017625.1 1796793 1797266 D PFAM: transcription activator effector binding; KEGG: sbc:SbBS512_E1226 DNA gyrase inhibitory protein; transcription activator effector binding protein 1796793..1797266 Escherichia coli DH1 12705241 YP_006091602.1 CDS EcDH1_1649 NC_017625.1 1797464 1798522 D KEGG: ssn:SSON_2078 hypothetical protein; hypothetical protein 1797464..1798522 Escherichia coli DH1 12705242 YP_006091603.1 CDS EcDH1_1650 NC_017625.1 1798694 1799023 D PFAM: protein of unknown function DUF496; KEGG: sbc:SbBS512_E1230 hypothetical protein; hypothetical protein 1798694..1799023 Escherichia coli DH1 12705243 YP_006091604.1 CDS EcDH1_1651 NC_017625.1 1799921 1800115 R KEGG: sfx:S3205 hypothetical protein; hypothetical protein complement(1799921..1800115) Escherichia coli DH1 12705244 YP_006091605.1 CDS EcDH1_1652 NC_017625.1 1800112 1800486 R PFAM: protein of unknown function DUF1219; KEGG: sbc:SbBS512_E1128 hypothetical protein; hypothetical protein complement(1800112..1800486) Escherichia coli DH1 12705245 YP_006091606.1 CDS EcDH1_1653 NC_017625.1 1800575 1800943 R PFAM: YagBYeeUYfjZ family protein; KEGG: sbc:SbBS512_E1127 hypothetical protein; YagBYeeUYfjZ family protein complement(1800575..1800943) Escherichia coli DH1 12705246 YP_006091607.1 CDS EcDH1_1654 NC_017625.1 1801017 1801238 R PFAM: protein of unknown function DUF987; KEGG: sbc:SbBS512_E1126 hypothetical protein; hypothetical protein complement(1801017..1801238) Escherichia coli DH1 12705247 YP_006091608.1 CDS EcDH1_1655 NC_017625.1 1801301 1801747 R PFAM: DNA repair protein RadC; KEGG: sbc:SbBS512_E1125 DNA repair protein, RadC family; DNA repair protein RadC complement(1801301..1801747) Escherichia coli DH1 12705248 YP_006091609.1 CDS EcDH1_1656 NC_017625.1 1801744 1803276 R KEGG: sfx:S3196 hypothetical protein; hypothetical protein complement(1801744..1803276) Escherichia coli DH1 12705249 YP_006091610.1 CDS EcDH1_1657 NC_017625.1 1803397 1806516 R TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfl:SF2991 outer membrane fluffing protein; outer membrane autotransporter barrel domain-containing protein complement(1803397..1806516) Escherichia coli DH1 12705250 YP_006091611.1 CDS EcDH1_1658 NC_017625.1 1806844 1807554 R KEGG: sfx:S3193 hypothetical protein; GTPase-like protein complement(1806844..1807554) Escherichia coli DH1 12705251 YP_006091612.1 CDS EcDH1_1660 NC_017625.1 1807875 1808240 D PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 1807875..1808240 Escherichia coli DH1 12705253 YP_006091613.1 CDS EcDH1_1661 NC_017625.1 1808198 1809103 D PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 1808198..1809103 Escherichia coli DH1 12705254 YP_006091614.1 CDS EcDH1_1662 NC_017625.1 1810770 1811750 D PFAM: transposase IS4 family protein; transposase IS4 family protein 1810770..1811750 Escherichia coli DH1 12705255 YP_006091615.1 CDS EcDH1_1663 NC_017625.1 1812291 1812836 D PFAM: cobalbumin biosynthesis protein; KEGG: sdy:SDY_2240 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; adenosylcobinamide-phosphate guanylyltransferase 1812291..1812836 Escherichia coli DH1 12705256 YP_006091616.1 CDS EcDH1_1664 NC_017625.1 1812833 1813576 D TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: sbc:SbBS512_E0966 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 1812833..1813576 Escherichia coli DH1 12705257 YP_006091617.1 CDS EcDH1_1665 NC_017625.1 1813588 1814667 D KEGG: sfx:S2169 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1813588..1814667 Escherichia coli DH1 12705258 YP_006091618.1 CDS EcDH1_1666 NC_017625.1 1814729 1815664 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_2243 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 1814729..1815664 Escherichia coli DH1 12705259 YP_006091619.1 CDS EcDH1_1667 NC_017625.1 1816122 1817039 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_2245 nitrogen assimilation transcriptional regulator; LysR family transcriptional regulator 1816122..1817039 Escherichia coli DH1 12705261 YP_006091620.1 CDS EcDH1_1668 NC_017625.1 1817141 1818091 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_2042 transcriptional regulator Cbl; LysR family transcriptional regulator 1817141..1818091 Escherichia coli DH1 12705262 YP_006091621.1 CDS EcDH1_1669 NC_017625.1 1818365 1819852 D TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ssn:SSON_2044 predicted multidrug efflux system; MATE efflux family protein 1818365..1819852 Escherichia coli DH1 12705264 YP_006091622.1 CDS EcDH1_1670 NC_017625.1 1820481 1821197 R PFAM: protein of unknown function DUF28; KEGG: sbo:SBO_1217 hypothetical protein; hypothetical protein complement(1820481..1821197) Escherichia coli DH1 12705266 YP_006091623.1 CDS EcDH1_1671 NC_017625.1 1821540 1822994 R KEGG: ssn:SSON_2047 AMP nucleosidase; TIGRFAM: AMP nucleosidase; PFAM: purine or other phosphorylase family 1; AMP nucleosidase complement(1821540..1822994) Escherichia coli DH1 12705267 YP_006091624.1 CDS EcDH1_1672 NC_017625.1 1823096 1824412 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_2254 shikimate transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) complement(1823096..1824412) Escherichia coli DH1 12705268 YP_006091625.1 CDS EcDH1_1674 NC_017625.1 1826041 1833117 R PFAM: Ig domain protein group 1 domain protein; SMART: PKD domain containing protein; KEGG: pmr:PMI0023 intimin/invasin; Ig domain-containing protein group 1 domain-containing protein complement(1826041..1833117) Escherichia coli DH1 12705270 YP_006091626.1 CDS EcDH1_1675 NC_017625.1 1833158 1833307 R hypothetical protein complement(1833158..1833307) Escherichia coli DH1 12705271 YP_006091627.1 CDS EcDH1_1676 NC_017625.1 1833607 1834404 R PFAM: protein of unknown function DUF980; KEGG: sbc:SbBS512_E0993 Mlc titration factor MtfA; hypothetical protein complement(1833607..1834404) Escherichia coli DH1 12705273 YP_006091628.1 CDS EcDH1_1677 NC_017625.1 1835157 1835687 R PFAM: cytochrome B561; KEGG: sbo:SBO_1032 putative cytochrome; cytochrome B561 complement(1835157..1835687) Escherichia coli DH1 12705275 YP_006091629.1 CDS EcDH1_1678 NC_017625.1 1836030 1836680 R PFAM: YodA domain protein; KEGG: sbc:SbBS512_E0910 metal-binding protein; Ribulose-phosphate 3-epimerase complement(1836030..1836680) Escherichia coli DH1 12705276 YP_006091630.1 CDS EcDH1_1679 NC_017625.1 1836937 1837572 R PFAM: Ferric reductase domain protein transmembrane component domain; KEGG: sdy:SDY_1034 putative sulfite oxidase subunit YedZ; ferric reductase transmembrane domain-containing protein complement(1836937..1837572) Escherichia coli DH1 12705277 YP_006091631.1 CDS EcDH1_1680 NC_017625.1 1837573 1838577 R PFAM: oxidoreductase molybdopterin binding; KEGG: sbc:SbBS512_E0912 oxidoreductase, molybdopterin binding; oxidoreductase molybdopterin binding protein complement(1837573..1838577) Escherichia coli DH1 12705278 YP_006091632.1 CDS EcDH1_1681 NC_017625.1 1838686 1839099 R TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; KEGG: sfv:SFV_2015 hypothetical protein; hydroxyisourate hydrolase complement(1838686..1839099) Escherichia coli DH1 12705279 YP_006091633.1 CDS EcDH1_1682 NC_017625.1 1839121 1839903 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbc:SbBS512_E0914 heavy metal response regulator; two component heavy metal response transcriptional regulator, winged helix family 1839121..1839903 Escherichia coli DH1 12705280 YP_006091634.1 CDS EcDH1_1683 NC_017625.1 1839903 1841261 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_2026 putative 2-component sensor protein; heavy metal sensor signal transduction histidine kinase 1839903..1841261 Escherichia coli DH1 12705281 YP_006091635.1 CDS EcDH1_1684 NC_017625.1 1841369 1842220 R PFAM: ThiJ/PfpI domain protein; KEGG: sbc:SbBS512_E0916 chaperone protein HchA; ThiJ/PfpI domain-containing protein complement(1841369..1842220) Escherichia coli DH1 12705282 YP_006091636.1 CDS EcDH1_1686 NC_017625.1 1844553 1844936 D KEGG: sbo:SBO_1045 hypothetical protein; hypothetical protein 1844553..1844936 Escherichia coli DH1 12705284 YP_006091637.1 CDS EcDH1_1687 NC_017625.1 1844976 1845671 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sbc:SbBS512_E0922 putative metal-dependent phosphohydrolase; metal dependent phosphohydrolase 1844976..1845671 Escherichia coli DH1 12705285 YP_006091638.1 CDS EcDH1_1688 NC_017625.1 1845738 1847156 D TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sbc:SbBS512_E0923 DNA-cytosine methyltransferase; DNA-cytosine methyltransferase 1845738..1847156 Escherichia coli DH1 12705286 YP_006091639.1 CDS EcDH1_1689 NC_017625.1 1847137 1847607 D TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: sbc:SbBS512_E0925 very short patch repair protein; DNA mismatch endonuclease Vsr 1847137..1847607 Escherichia coli DH1 12705287 YP_006091640.1 CDS EcDH1_1690 NC_017625.1 1847596 1848516 R TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbc:SbBS512_E0924 carboxylate/amino acid/amine transporter; carboxylate/amino acid/amine transporter complement(1847596..1848516) Escherichia coli DH1 12705288 YP_006091641.1 CDS EcDH1_1691 NC_017625.1 1848689 1849606 D PFAM: protein of unknown function DUF808; KEGG: sdy:SDY_1048 hypothetical protein; hypothetical protein 1848689..1849606 Escherichia coli DH1 12705289 YP_006091642.1 CDS EcDH1_1692 NC_017625.1 1849685 1849867 D KEGG: sdy:SDY_1049 hypothetical protein; hypothetical protein 1849685..1849867 Escherichia coli DH1 12705290 YP_006091643.1 CDS EcDH1_1693 NC_017625.1 1850038 1851732 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_2013 hypothetical protein; diguanylate cyclase 1850038..1851732 Escherichia coli DH1 12705291 YP_006091644.1 CDS EcDH1_1694 NC_017625.1 1851729 1852544 R KEGG: sdy:SDY_1051 mannosyl-3-phosphoglycerate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; mannosyl-3-phosphoglycerate phosphatase family; mannosyl-3-phosphoglycerate phosphatase family protein; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; mannosyl-3-phosphoglycerate phosphatase family protein complement(1851729..1852544) Escherichia coli DH1 12705292 YP_006091645.1 CDS EcDH1_1695 NC_017625.1 1852842 1853069 R KEGG: sdy:SDY_1052 hypothetical protein; hypothetical protein complement(1852842..1853069) Escherichia coli DH1 12705293 YP_006091646.1 CDS EcDH1_1696 NC_017625.1 1853232 1853420 D KEGG: sdy:SDY_1053 hypothetical protein; hypothetical protein 1853232..1853420 Escherichia coli DH1 12705294 YP_006091647.1 CDS EcDH1_1697 NC_017625.1 1853464 1854087 R PFAM: regulatory protein LuxR; KEGG: sfv:SFV_1994 positive regulator for ctr capsule biosynthesis, positive transcription factor; LuxR family transcriptional regulator complement(1853464..1854087) Escherichia coli DH1 12705295 YP_006091648.1 CDS EcDH1_1698 NC_017625.1 1854377 1855162 R TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: ssn:SSON_2008 flagellar biosynthesis protein FliR; flagellar biosynthetic protein FliR complement(1854377..1855162) Escherichia coli DH1 12705296 YP_006091649.1 CDS EcDH1_1699 NC_017625.1 1855170 1855439 R TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: sbo:SBO_1058 flagellar biosynthesis protein FliQ; flagellar biosynthetic protein FliQ complement(1855170..1855439) Escherichia coli DH1 12705297 YP_006091650.1 CDS EcDH1_1700 NC_017625.1 1855449 1856186 R KEGG: sbc:SbBS512_E1069 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP complement(1855449..1856186) Escherichia coli DH1 12705298 YP_006091651.1 CDS EcDH1_1701 NC_017625.1 1856186 1856551 R PFAM: flagellar biosynthesis protein FliO; KEGG: ssn:SSON_2005 flagellar biosynthesis protein FliO; flagellar biosynthesis protein FliO complement(1856186..1856551) Escherichia coli DH1 12705299 YP_006091652.1 CDS EcDH1_1702 NC_017625.1 1856554 1856967 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sbc:SbBS512_E1067 flagellar motor switch protein FliN; flagellar motor switch protein FliN complement(1856554..1856967) Escherichia coli DH1 12705300 YP_006091653.1 CDS EcDH1_1703 NC_017625.1 1856964 1857968 R PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sbo:SBO_1062 flagellar motor switch protein FliM; flagellar motor switch protein FliM complement(1856964..1857968) Escherichia coli DH1 12705301 YP_006091654.1 CDS EcDH1_1704 NC_017625.1 1857973 1858437 R PFAM: flagellar basal body-associated protein FliL; KEGG: sfv:SFV_1987 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL complement(1857973..1858437) Escherichia coli DH1 12705302 YP_006091655.1 CDS EcDH1_1705 NC_017625.1 1858542 1859669 R PFAM: flagellar hook-length control protein; KEGG: sfv:SFV_1986 flagellar hook-length control protein; flagellar hook-length control protein complement(1858542..1859669) Escherichia coli DH1 12705303 YP_006091656.1 CDS EcDH1_1706 NC_017625.1 1859666 1860109 R TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: ssn:SSON_2000 flagellar biosynthesis chaperone; flagellar export protein FliJ complement(1859666..1860109) Escherichia coli DH1 12705304 YP_006091657.1 CDS EcDH1_1707 NC_017625.1 1860128 1861501 R KEGG: ssn:SSON_1999 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; FliI/YscN family ATPase complement(1860128..1861501) Escherichia coli DH1 12705305 YP_006091658.1 CDS EcDH1_1708 NC_017625.1 1861501 1862187 R PFAM: flagellar assembly protein FliH; KEGG: ssn:SSON_1998 flagellar assembly protein H; flagellar assembly protein FliH complement(1861501..1862187) Escherichia coli DH1 12705306 YP_006091659.1 CDS EcDH1_1709 NC_017625.1 1862180 1863175 R PFAM: flagellar motor switch protein FliG; KEGG: ssn:SSON_1997 flagellar motor switch protein G; flagellar motor switch protein FliG complement(1862180..1863175) Escherichia coli DH1 12705307 YP_006091660.1 CDS EcDH1_1710 NC_017625.1 1863168 1864826 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: ssn:SSON_1996 flagellar MS-ring protein; flagellar M-ring protein FliF complement(1863168..1864826) Escherichia coli DH1 12705308 YP_006091661.1 CDS EcDH1_1711 NC_017625.1 1865041 1865355 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: ssn:SSON_1995 flagellar hook-basal body protein FliE; flagellar hook-basal body complex subunit FliE 1865041..1865355 Escherichia coli DH1 12705309 YP_006091662.1 CDS EcDH1_1714 NC_017625.1 1866976 1867455 R PFAM: GCN5-related N-acetyltransferase; KEGG: cko:CKO_01238 hypothetical protein; N-acetyltransferase GCN5 complement(1866976..1867455) Escherichia coli DH1 12705312 YP_006091663.1 CDS EcDH1_1715 NC_017625.1 1867566 1868234 R PFAM: protein of unknown function DUF159; KEGG: ssn:SSON_1987 hypothetical protein; hypothetical protein complement(1867566..1868234) Escherichia coli DH1 12705313 YP_006091664.1 CDS EcDH1_1716 NC_017625.1 1868343 1868576 R PFAM: SirA family protein; KEGG: cko:CKO_01008 hypothetical protein; SirA family protein complement(1868343..1868576) Escherichia coli DH1 12705314 YP_006091665.1 CDS EcDH1_1717 NC_017625.1 1868573 1869778 R PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: sbo:SBO_1077 predicted inner membrane protein; hypothetical protein complement(1868573..1869778) Escherichia coli DH1 12705315 YP_006091666.1 CDS EcDH1_1718 NC_017625.1 1869965 1870378 D KEGG: sdy:SDY_1087 hypothetical protein; hypothetical protein 1869965..1870378 Escherichia coli DH1 12705316 YP_006091667.1 CDS EcDH1_1719 NC_017625.1 1870412 1871899 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ssn:SSON_1983 cytoplasmic alpha-amylase; alpha amylase complement(1870412..1871899) Escherichia coli DH1 12705317 YP_006091668.1 CDS EcDH1_1720 NC_017625.1 1871977 1872342 R PFAM: flagellar export chaperone; KEGG: ssn:SSON_1982 flagellar biosynthesis protein FliT; flagellar export chaperone complement(1871977..1872342) Escherichia coli DH1 12705318 YP_006091669.1 CDS EcDH1_1721 NC_017625.1 1872342 1872752 R PFAM: flagellar protein FliS; KEGG: sbc:SbBS512_E1055 flagellar protein FliS; flagellar protein FliS complement(1872342..1872752) Escherichia coli DH1 12705319 YP_006091670.1 CDS EcDH1_1722 NC_017625.1 1872777 1874183 R PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: sbo:SBO_1082 flagellar capping protein; flagellar hook-associated 2 domain-containing protein complement(1872777..1874183) Escherichia coli DH1 12705320 YP_006091671.1 CDS EcDH1_1723 NC_017625.1 1874449 1875945 D PFAM: flagellin domain protein; Flagellin D3 domain protein; KEGG: spq:SPAB_01193 flagellin; flagellin domain-containing protein 1874449..1875945 Escherichia coli DH1 12705321 YP_006091672.1 CDS EcDH1_1724 NC_017625.1 1876266 1876985 D KEGG: ssn:SSON_1194 flagellar biosynthesis sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG 1876266..1876985 Escherichia coli DH1 12705322 YP_006091673.1 CDS EcDH1_1725 NC_017625.1 1877031 1877582 D PFAM: integrase domain protein SAM domain protein; KEGG: sdy:SDY_1096 protein FliZ; integrase domain-containing protein SAM domain-containing protein 1877031..1877582 Escherichia coli DH1 12705323 YP_006091674.1 CDS EcDH1_1726 NC_017625.1 1877613 1878470 D PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sfl:SF1963 cystine transporter subunit; family 3 extracellular solute-binding protein 1877613..1878470 Escherichia coli DH1 12705324 YP_006091675.1 CDS EcDH1_1727 NC_017625.1 1878575 1879561 D KEGG: sfv:SFV_1963 D-cysteine desulfhydrase; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family 1878575..1879561 Escherichia coli DH1 12705325 YP_006091676.1 CDS EcDH1_1728 NC_017625.1 1879576 1880244 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1200 putative transport system permease protein (former YecC); polar amino acid ABC transporter inner membrane subunit 1879576..1880244 Escherichia coli DH1 12705326 YP_006091677.1 CDS EcDH1_1729 NC_017625.1 1880241 1880993 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_1201 putative amino-acid ABC transporter ATP-binding protein YecC; ABC transporter 1880241..1880993 Escherichia coli DH1 12705327 YP_006091678.1 CDS EcDH1_1730 NC_017625.1 1881223 1881945 D PFAM: regulatory protein LuxR; Autoinducer-binding domain protein; KEGG: sbc:SbBS512_E1044 regulatory protein SdiA; LuxR family transcriptional regulator 1881223..1881945 Escherichia coli DH1 12705328 YP_006091679.1 CDS EcDH1_1731 NC_017625.1 1882013 1882237 R KEGG: sdy:SDY_1103 hypothetical protein; hypothetical protein complement(1882013..1882237) Escherichia coli DH1 12705329 YP_006091680.1 CDS EcDH1_1732 NC_017625.1 1882696 1883352 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sbc:SbBS512_E1041 response regulator UvrY; LuxR family two component transcriptional regulator 1882696..1883352 Escherichia coli DH1 12705330 YP_006091681.1 CDS EcDH1_1733 NC_017625.1 1883349 1885181 D KEGG: ssn:SSON_1205 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: Excinuclease ABC C subunit domain protein; helix-hairpin-helix motif; excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Helix-hairpin-helix DNA-binding class 1; excinuclease ABC subunit C 1883349..1885181 Escherichia coli DH1 12705331 YP_006091682.1 CDS EcDH1_1734 NC_017625.1 1885238 1885786 D KEGG: sdy:SDY_1106 phosphatidylglycerophosphate synthetase; TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1885238..1885786 Escherichia coli DH1 12705332 YP_006091683.1 CDS EcDH1_1735 NC_017625.1 1886436 1887101 D TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: sbo:SBO_1098 hypothetical protein; yecA family protein 1886436..1887101 Escherichia coli DH1 12705336 YP_006091684.1 CDS EcDH1_1736 NC_017625.1 1887163 1888374 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; Amino acid transporter transmembrane; KEGG: sfv:SFV_1951 tyrosine transporter; aromatic amino acid transporter complement(1887163..1888374) Escherichia coli DH1 12705337 YP_006091685.1 CDS EcDH1_1737 NC_017625.1 1888565 1888804 D KEGG: sbc:SbBS512_E1032 hypothetical protein; hypothetical protein 1888565..1888804 Escherichia coli DH1 12705338 YP_006091686.1 CDS EcDH1_1738 NC_017625.1 1888842 1889339 R PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_1113 ferritin; ferroxidase complement(1888842..1889339) Escherichia coli DH1 12705339 YP_006091687.1 CDS EcDH1_1739 NC_017625.1 1889510 1889833 R KEGG: ssn:SSON_1214 hypothetical protein; hypothetical protein complement(1889510..1889833) Escherichia coli DH1 12705340 YP_006091688.1 CDS EcDH1_1740 NC_017625.1 1890297 1890548 D KEGG: sdy:SDY_1117 hypothetical protein; hypothetical protein 1890297..1890548 Escherichia coli DH1 12705341 YP_006091689.1 CDS EcDH1_1741 NC_017625.1 1890627 1891130 R PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_1116 ferritin-like protein; ferritin Dps family protein complement(1890627..1891130) Escherichia coli DH1 12705342 YP_006091690.1 CDS EcDH1_1742 NC_017625.1 1891927 1892916 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_1217 L-arabinose-binding periplasmic protein; monosaccharide-transporting ATPase 1891927..1892916 Escherichia coli DH1 12705343 YP_006091691.1 CDS EcDH1_1743 NC_017625.1 1892986 1894500 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_1121 L-arabinose transporter ATP-binding protein; ABC transporter 1892986..1894500 Escherichia coli DH1 12705344 YP_006091692.1 CDS EcDH1_1744 NC_017625.1 1894515 1895501 D PFAM: inner-membrane translocator; KEGG: sfv:SFV_1942 L-arabinose transporter permease protein; monosaccharide-transporting ATPase 1894515..1895501 Escherichia coli DH1 12705345 YP_006091693.1 CDS EcDH1_1745 NC_017625.1 1895668 1896468 D KEGG: ssn:SSON_1220 trehalose-6-phosphate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD-superfamily hydrolase 1895668..1896468 Escherichia coli DH1 12705346 YP_006091694.1 CDS EcDH1_1746 NC_017625.1 1896443 1897867 D KEGG: sdy:SDY_1193 trehalose-6-phosphate synthase; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase family 20; alpha,alpha-trehalose-phosphate synthase (UDP-forming) 1896443..1897867 Escherichia coli DH1 12705347 YP_006091695.1 CDS EcDH1_1747 NC_017625.1 1897874 1898302 R PFAM: UspA domain protein; KEGG: sbo:SBO_1113 universal stress protein UspC; UspA domain-containing protein complement(1897874..1898302) Escherichia coli DH1 12705348 YP_006091696.1 CDS EcDH1_1748 NC_017625.1 1899082 1899432 D PFAM: flagellar transcriptional activator; KEGG: sdy:SDY_1191 transcriptional activator FlhD; flagellar transcriptional activator 1899082..1899432 Escherichia coli DH1 12705349 YP_006091697.1 CDS EcDH1_1749 NC_017625.1 1899435 1900013 D PFAM: flagellar transcriptional activator FlhC; KEGG: ssn:SSON_1226 transcriptional activator FlhC; flagellar transcriptional activator FlhC 1899435..1900013 Escherichia coli DH1 12705350 YP_006091698.1 CDS EcDH1_1750 NC_017625.1 1900140 1901027 D KEGG: ssn:SSON_1227 flagellar motor protein MotA; flagellar motor protein MotA 1900140..1901027 Escherichia coli DH1 12705351 YP_006091699.1 CDS EcDH1_1751 NC_017625.1 1901024 1901950 D PFAM: OmpA/MotB domain protein; KEGG: ssn:SSON_1228 flagellar motor protein MotB; OmpA/MotB domain-containing protein 1901024..1901950 Escherichia coli DH1 12705352 YP_006091700.1 CDS EcDH1_1752 NC_017625.1 1901955 1903919 D PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheY binding; KEGG: ssn:SSON_1229 chemotaxis protein CheA; CheA signal transduction histidine kinase 1901955..1903919 Escherichia coli DH1 12705353 YP_006091701.1 CDS EcDH1_1753 NC_017625.1 1903940 1904443 D PFAM: CheW domain protein; KEGG: ssn:SSON_1230 purine-binding chemotaxis protein; CheW protein 1903940..1904443 Escherichia coli DH1 12705354 YP_006091702.1 CDS EcDH1_1754 NC_017625.1 1904588 1906249 D PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ssn:SSON_1231 methyl-accepting chemotaxis protein II; methyl-accepting chemotaxis sensory transducer 1904588..1906249 Escherichia coli DH1 12705355 YP_006091703.1 CDS EcDH1_1755 NC_017625.1 1906295 1907896 D PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ssn:SSON_1232 methyl-accepting protein IV; methyl-accepting chemotaxis sensory transducer 1906295..1907896 Escherichia coli DH1 12705356 YP_006091704.1 CDS EcDH1_1756 NC_017625.1 1907915 1908775 D PFAM: MCP methyltransferase CheR-type; KEGG: sbc:SbBS512_E2177 chemotaxis protein methyltransferase CheR; chemotaxis protein CheR 1907915..1908775 Escherichia coli DH1 12705357 YP_006091705.1 CDS EcDH1_1757 NC_017625.1 1908778 1909827 D PFAM: CheB methylesterase; response regulator receiver; KEGG: ssn:SSON_1234 chemotaxis-specific methylesterase; response regulator receiver modulated CheB methylesterase 1908778..1909827 Escherichia coli DH1 12705358 YP_006091706.1 CDS EcDH1_1758 NC_017625.1 1909842 1910231 D PFAM: response regulator receiver; KEGG: ssn:SSON_1235 chemotaxis regulator transmitting signal to flagellar motor component; response regulator receiver protein 1909842..1910231 Escherichia coli DH1 12705359 YP_006091707.1 CDS EcDH1_1759 NC_017625.1 1910242 1910886 D PFAM: Chemotaxis phosphatase CheZ; KEGG: sbo:SBO_1119 chemotaxis regulator CheZ; chemotaxis phosphatase, CheZ 1910242..1910886 Escherichia coli DH1 12705360 YP_006091708.1 CDS EcDH1_1760 NC_017625.1 1911088 1912236 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sfv:SFV_1921 flagellar biosynthesis protein FlhB; flagellar biosynthetic protein FlhB 1911088..1912236 Escherichia coli DH1 12705361 YP_006091709.1 CDS EcDH1_1761 NC_017625.1 1912229 1914307 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: sbo:SBO_1121 flagellar biosynthesis protein A; flagellar biosynthesis protein FlhA 1912229..1914307 Escherichia coli DH1 12705362 YP_006091710.1 CDS EcDH1_1762 NC_017625.1 1914307 1914699 D PFAM: flagellar FlhE family protein; KEGG: sbc:SbBS512_E2171 flagellar protein FlhE; flagellar FlhE family protein 1914307..1914699 Escherichia coli DH1 12705363 YP_006091711.1 CDS EcDH1_1763 NC_017625.1 1914819 1915307 R PFAM: protein of unknown function DUF1311; KEGG: sbo:SBO_1123 hypothetical protein; hypothetical protein complement(1914819..1915307) Escherichia coli DH1 12705364 YP_006091712.1 CDS EcDH1_1764 NC_017625.1 1915484 1917217 R KEGG: sbc:SbBS512_E2169 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(1915484..1917217) Escherichia coli DH1 12705365 YP_006091713.1 CDS EcDH1_1765 NC_017625.1 1917433 1917999 D PFAM: protein of unknown function DUF991; KEGG: sdy:SDY_1179 hypothetical protein; hypothetical protein 1917433..1917999 Escherichia coli DH1 12705366 YP_006091714.1 CDS EcDH1_1766 NC_017625.1 1918013 1918759 D PFAM: CutC family protein; KEGG: ssn:SSON_1244 copper homeostasis protein CutC; CutC family protein 1918013..1918759 Escherichia coli DH1 12705367 YP_006091715.1 CDS EcDH1_1767 NC_017625.1 1919147 1920247 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: sfv:SFV_1911 putative cytochrome c-type protein; NapC/NirT cytochrome c domain protein 1919147..1920247 Escherichia coli DH1 12705368 YP_006091716.1 CDS EcDH1_1768 NC_017625.1 1920272 1922701 D TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfx:S2003 biotin sulfoxide reductase 2; molybdopterin guanine dinucleotide-containing S/N-oxide reductase 1920272..1922701 Escherichia coli DH1 12705369 YP_006091717.1 CDS EcDH1_1769 NC_017625.1 1922866 1923837 R TIGRFAM: methyltransferase; PFAM: methyltransferase putative; KEGG: sdy:SDY_1170 putative enzyme; methyltransferase complement(1922866..1923837) Escherichia coli DH1 12705370 YP_006091718.1 CDS EcDH1_1770 NC_017625.1 1923834 1924577 R TIGRFAM: methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_1169 hypothetical protein; methyltransferase complement(1923834..1924577) Escherichia coli DH1 12705371 YP_006091719.1 CDS EcDH1_1771 NC_017625.1 1924618 1925013 R KEGG: sdy:SDY_1168 hypothetical protein; hypothetical protein complement(1924618..1925013) Escherichia coli DH1 12705372 YP_006091720.1 CDS EcDH1_1772 NC_017625.1 1925066 1925884 R PFAM: protein of unknown function DUF72; KEGG: ent:Ent638_2436 hypothetical protein; hypothetical protein complement(1925066..1925884) Escherichia coli DH1 12705373 YP_006091721.1 CDS EcDH1_1773 NC_017625.1 1925881 1926447 R PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1274 hypothetical protein; isochorismatase hydrolase complement(1925881..1926447) Escherichia coli DH1 12705374 YP_006091722.1 CDS EcDH1_1774 NC_017625.1 1926757 1928529 D TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sbc:SbBS512_E1106 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 1926757..1928529 Escherichia coli DH1 12705375 YP_006091723.1 CDS EcDH1_1775 NC_017625.1 1928590 1929099 D PFAM: NUDIX hydrolase; KEGG: sfv:SFV_1867 dATP pyrophosphohydrolase; NUDIX hydrolase 1928590..1929099 Escherichia coli DH1 12705376 YP_006091724.1 CDS EcDH1_1776 NC_017625.1 1929128 1929868 D PFAM: protein of unknown function DUF28; KEGG: ssn:SSON_1277 hypothetical protein; hypothetical protein 1929128..1929868 Escherichia coli DH1 12705377 YP_006091725.1 CDS EcDH1_1777 NC_017625.1 1929903 1930424 D KEGG: sdy:SDY_1150 Holliday junction resolvase; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC 1929903..1930424 Escherichia coli DH1 12705378 YP_006091726.1 CDS EcDH1_1778 NC_017625.1 1930426 1931028 R PFAM: protein of unknown function DUF1105; KEGG: ssn:SSON_1279 hypothetical protein; hypothetical protein complement(1930426..1931028) Escherichia coli DH1 12705379 YP_006091727.1 CDS EcDH1_1779 NC_017625.1 1931303 1931914 D KEGG: sbc:SbBS512_E0957 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: RuvA domain protein; DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA 1931303..1931914 Escherichia coli DH1 12705380 YP_006091728.1 CDS EcDH1_1780 NC_017625.1 1931923 1932933 D KEGG: sdy:SDY_1147 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB 1931923..1932933 Escherichia coli DH1 12705381 YP_006091729.1 CDS EcDH1_1781 NC_017625.1 1933080 1933865 R PFAM: transport system permease protein; ABC-3 protein; KEGG: ssn:SSON_1282 high-affinity zinc transporter membrane component; ABC-3 protein complement(1933080..1933865) Escherichia coli DH1 12705382 YP_006091730.1 CDS EcDH1_1782 NC_017625.1 1933862 1934617 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_1175 high-affinity zinc transporter ATPase; ABC transporter complement(1933862..1934617) Escherichia coli DH1 12705383 YP_006091731.1 CDS EcDH1_1783 NC_017625.1 1934642 1935628 D PFAM: periplasmic solute binding protein; KEGG: sfv:SFV_1860 high-affinity zinc transporter periplasmic component; periplasmic solute binding protein 1934642..1935628 Escherichia coli DH1 12705384 YP_006091732.1 CDS EcDH1_1784 NC_017625.1 1935644 1936966 D PFAM: Peptidoglycan-binding LysM; Opacity-associated protein A; Opacity-associated protein A domain protein; Peptidase M23; KEGG: sbc:SbBS512_E0952 metalloprotease, opacity-associated protein A family; peptidase M23 1935644..1936966 Escherichia coli DH1 12705385 YP_006091733.1 CDS EcDH1_1785 NC_017625.1 1937086 1938057 D TIGRFAM: lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: ssn:SSON_1286 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 1937086..1938057 Escherichia coli DH1 12705386 YP_006091734.1 CDS EcDH1_1786 NC_017625.1 1938188 1939630 R KEGG: sbc:SbBS512_E2130 pyruvate kinase II; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(1938188..1939630) Escherichia coli DH1 12705387 YP_006091735.1 CDS EcDH1_1787 NC_017625.1 1939758 1940627 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: sbo:SBO_1161 DNA-binding transcriptional regulator HexR; RpiR family transcriptional regulator complement(1939758..1940627) Escherichia coli DH1 12705388 YP_006091736.1 CDS EcDH1_1788 NC_017625.1 1940650 1940799 D KEGG: sbc:SbBS512_E2128 hypothetical protein; hypothetical protein 1940650..1940799 Escherichia coli DH1 12705389 YP_006091737.1 CDS EcDH1_1789 NC_017625.1 1940965 1942440 D KEGG: sdy:SDY_1138 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1940965..1942440 Escherichia coli DH1 12705390 YP_006091738.1 CDS EcDH1_1790 NC_017625.1 1942675 1944486 D KEGG: sfv:SFV_1853 phosphogluconate dehydratase; TIGRFAM: 6-phosphogluconate dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; 6-phosphogluconate dehydratase 1942675..1944486 Escherichia coli DH1 12705391 YP_006091739.1 CDS EcDH1_1791 NC_017625.1 1944523 1945164 D KEGG: sbc:SbBS512_E2125 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 1944523..1945164 Escherichia coli DH1 12705392 YP_006091740.1 CDS EcDH1_1792 NC_017625.1 1945220 1946398 R KEGG: ssn:SSON_1299 phosphoribosylglycinamide formyltransferase 2; TIGRFAM: phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide formyltransferase 2 complement(1945220..1946398) Escherichia coli DH1 12705393 YP_006091741.1 CDS EcDH1_1793 NC_017625.1 1946532 1946822 D PFAM: YebG family protein; KEGG: sdy:SDY_1134 DNA damage-inducible protein YebG; hypothetical protein 1946532..1946822 Escherichia coli DH1 12705394 YP_006091742.1 CDS EcDH1_1794 NC_017625.1 1946889 1947245 D KEGG: sbc:SbBS512_E2122 putative lipoprotein; putative lipoprotein 1946889..1947245 Escherichia coli DH1 12705395 YP_006091743.1 CDS EcDH1_1795 NC_017625.1 1947402 1947512 R hypothetical protein complement(1947402..1947512) Escherichia coli DH1 12705396 YP_006091744.1 CDS EcDH1_1796 NC_017625.1 1947572 1948231 D PFAM: protein of unknown function DUF533; KEGG: ssn:SSON_1302 hypothetical protein; hypothetical protein 1947572..1948231 Escherichia coli DH1 12705397 YP_006091745.1 CDS EcDH1_1797 NC_017625.1 1948440 1950500 D PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: sfv:SFV_1847 protease 2; oligopeptidase B 1948440..1950500 Escherichia coli DH1 12705398 YP_006091746.1 CDS EcDH1_1798 NC_017625.1 1950497 1951159 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sdy:SDY_1130 exodeoxyribonuclease X; Exonuclease RNase T and DNA polymerase III complement(1950497..1951159) Escherichia coli DH1 12705399 YP_006091747.1 CDS EcDH1_1799 NC_017625.1 1951183 1951839 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E2118 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(1951183..1951839) Escherichia coli DH1 12705400 YP_006091748.1 CDS EcDH1_1800 NC_017625.1 1951941 1952171 R PFAM: DNA polymerase II beta subunit; KEGG: sdy:SDY_1128 DNA polymerase III subunit theta; DNA polymerase II subunit beta complement(1951941..1952171) Escherichia coli DH1 12705401 YP_006091749.1 CDS EcDH1_1801 NC_017625.1 1952310 1952684 D PFAM: copper resistance protein CopC; KEGG: sbc:SbBS512_E2116 copper resistance protein CopC; copper resistance protein CopC 1952310..1952684 Escherichia coli DH1 12705402 YP_006091750.1 CDS EcDH1_1802 NC_017625.1 1952688 1953560 D PFAM: copper resistance D domain protein; KEGG: sbc:SbBS512_E2115 copper resistance protein D; copper resistance D domain-containing protein 1952688..1953560 Escherichia coli DH1 12705403 YP_006091751.1 CDS EcDH1_1803 NC_017625.1 1953573 1953914 D KEGG: sbo:SBO_1143 hypothetical protein; hypothetical protein 1953573..1953914 Escherichia coli DH1 12705404 YP_006091752.1 CDS EcDH1_1804 NC_017625.1 1954310 1954966 D PFAM: metallophosphoesterase; KEGG: sbo:SBO_1253 serine/threonine protein phosphatase 1; bis(5'-nucleosyl)-tetraphosphatase 1954310..1954966 Escherichia coli DH1 12705405 YP_006091753.1 CDS EcDH1_1805 NC_017625.1 1954967 1955242 R PFAM: protein of unknown function DUF1482; KEGG: sbc:SbBS512_E2105 hypothetical protein; hypothetical protein complement(1954967..1955242) Escherichia coli DH1 12705406 YP_006091754.1 CDS EcDH1_1806 NC_017625.1 1955263 1955499 R PFAM: protein of unknown function DUF1480; KEGG: sdy:SDY_1987 hypothetical protein; hypothetical protein complement(1955263..1955499) Escherichia coli DH1 12705407 YP_006091755.1 CDS EcDH1_1807 NC_017625.1 1955617 1957062 R TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; KEGG: ssn:SSON_1326 rRNA (cytosine-C(5)-)-methyltransferase RsmF; RNA methylase complement(1955617..1957062) Escherichia coli DH1 12705408 YP_006091756.1 CDS EcDH1_1808 NC_017625.1 1957136 1959769 R PFAM: Mammalian cell entry related domain protein; KEGG: ssn:SSON_1327 hypothetical protein; Mammalian cell entry related domain-containing protein complement(1957136..1959769) Escherichia coli DH1 12705409 YP_006091757.1 CDS EcDH1_1809 NC_017625.1 1959738 1961021 R TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: ssn:SSON_1328 hypothetical protein; PqiA family integral membrane protein complement(1959738..1961021) Escherichia coli DH1 12705410 YP_006091758.1 CDS EcDH1_1810 NC_017625.1 1961097 1961648 D PFAM: GAF domain protein; KEGG: sdy:SDY_1980 hypothetical protein; putative GAF sensor protein 1961097..1961648 Escherichia coli DH1 12705411 YP_006091759.1 CDS EcDH1_1811 NC_017625.1 1961745 1962443 D PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: sbo:SBO_1246 putative solute/DNA competence effector; ProQ activator of osmoprotectant transporter ProP 1961745..1962443 Escherichia coli DH1 12705412 YP_006091760.1 CDS EcDH1_1812 NC_017625.1 1962463 1964511 D KEGG: sbc:SbBS512_E2098 C-terminal processing peptidase; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 1962463..1964511 Escherichia coli DH1 12705413 YP_006091761.1 CDS EcDH1_1813 NC_017625.1 1964703 1965584 D PFAM: peptidase M48 Ste24p; HtpX domain protein; KEGG: sdy:SDY_1977 heat shock protein HtpX; HtpX domain protein 1964703..1965584 Escherichia coli DH1 12705414 YP_006091762.1 CDS EcDH1_1814 NC_017625.1 1965630 1967003 R PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2096 transporter, major facilitator family; major facilitator superfamily protein complement(1965630..1967003) Escherichia coli DH1 12705415 YP_006091763.1 CDS EcDH1_1816 NC_017625.1 1967501 1968481 R PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein complement(1967501..1968481) Escherichia coli DH1 12705417 YP_006091764.1 CDS EcDH1_1817 NC_017625.1 1969314 1969553 R KEGG: sdy:SDY_1974 hypothetical protein; hypothetical protein complement(1969314..1969553) Escherichia coli DH1 12705418 YP_006091765.1 CDS EcDH1_1818 NC_017625.1 1969712 1969855 D KEGG: sdy:SDY_1973 hypothetical protein; hypothetical protein 1969712..1969855 Escherichia coli DH1 12705419 YP_006091766.1 CDS EcDH1_1819 NC_017625.1 1969930 1970217 D KEGG: sbc:SbBS512_E2092 hypothetical protein; hypothetical protein 1969930..1970217 Escherichia coli DH1 12705420 YP_006091767.1 CDS EcDH1_1820 NC_017625.1 1971043 1971252 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: kpn:KPN_02340 cold shock protein; cold-shock protein 1971043..1971252 Escherichia coli DH1 12705421 YP_006091768.1 CDS EcDH1_1821 NC_017625.1 1971418 1972227 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_1968 23S rRNA methyltransferase A; rRNA (guanine-N(1)-)-methyltransferase 1971418..1972227 Escherichia coli DH1 12705422 YP_006091769.1 CDS EcDH1_1822 NC_017625.1 1972224 1972790 R PFAM: protein of unknown function DUF204; KEGG: sdy:SDY_1967 hypothetical protein; hypothetical protein complement(1972224..1972790) Escherichia coli DH1 12705423 YP_006091770.1 CDS EcDH1_1823 NC_017625.1 1973219 1973677 R PFAM: protein of unknown function DUF986; KEGG: sdy:SDY_1966 hypothetical protein; hypothetical protein complement(1973219..1973677) Escherichia coli DH1 12705424 YP_006091771.1 CDS EcDH1_1824 NC_017625.1 1973732 1974583 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IID subunit; PFAM: PTS system mannose/fructose/sorbose family IID component; KEGG: sdy:SDY_1965 mannose-specific PTS system protein IID; PTS system mannose/fructose/sorbose family transporter subunit IID complement(1973732..1974583) Escherichia coli DH1 12705425 YP_006091772.1 CDS EcDH1_1825 NC_017625.1 1974596 1975396 R TIGRFAM: PTS system, mannose/fructose/sorbose family, IIC subunit; PFAM: phosphotransferase system PTS sorbose-specific IIC subunit; KEGG: sbc:SbBS512_E2084 PTS system, mannose-specific IIC component; PTS system mannose/fructose/sorbose family transporter subunit IIC complement(1974596..1975396) Escherichia coli DH1 12705426 YP_006091773.1 CDS EcDH1_1826 NC_017625.1 1975459 1976430 R KEGG: sbc:SbBS512_E2083 PTS system, mannose-specific IIAB component; TIGRFAM: PTS system, mannose/fructose/sorbose family, IIB subunit; PTS system, mannose/fructose/sorbose family, IIA subunit; PFAM: PTS system fructose subfamily IIA component; PTS system sorbose subfamily IIB component; PTS system mannose/fructose/sorbose family transporter subunit IIA complement(1975459..1976430) Escherichia coli DH1 12705427 YP_006091774.1 CDS EcDH1_1827 NC_017625.1 1976893 1978449 D PFAM: CBS domain containing protein; transporter-associated region; Integral membrane protein TerC; KEGG: sbc:SbBS512_E2082 membrane protein, TerC family/CBS/transporter associated domain protein; integral membrane protein TerC 1976893..1978449 Escherichia coli DH1 12705428 YP_006091775.1 CDS EcDH1_1828 NC_017625.1 1978453 1980051 R PFAM: EAL domain protein; KEGG: ssn:SSON_1345 hypothetical protein; diguanylate phosphodiesterase complement(1978453..1980051) Escherichia coli DH1 12705429 YP_006091776.1 CDS EcDH1_1829 NC_017625.1 1980182 1981546 R KEGG: sbo:SBO_1270 L-serine deaminase; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 complement(1980182..1981546) Escherichia coli DH1 12705430 YP_006091777.1 CDS EcDH1_1830 NC_017625.1 1981730 1982308 R PFAM: NUDIX hydrolase; KEGG: sdy:SDY_1719 hypothetical protein; NUDIX hydrolase complement(1981730..1982308) Escherichia coli DH1 12705431 YP_006091778.1 CDS EcDH1_1831 NC_017625.1 1982312 1983673 R TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: ssn:SSON_1348 p-aminobenzoate synthetase, component I; para-aminobenzoate synthase subunit I complement(1982312..1983673) Escherichia coli DH1 12705432 YP_006091779.1 CDS EcDH1_1832 NC_017625.1 1983747 1983926 D PFAM: protein of unknown function UPF0181; KEGG: sdy:SDY_1717 hypothetical protein; hypothetical protein 1983747..1983926 Escherichia coli DH1 12705433 YP_006091780.1 CDS EcDH1_1833 NC_017625.1 1984046 1984345 R PFAM: Domain of unknown function DUF1889; KEGG: sbo:SBO_1276 hypothetical protein; hypothetical protein complement(1984046..1984345) Escherichia coli DH1 12705434 YP_006091781.1 CDS EcDH1_1834 NC_017625.1 1984767 1985114 R PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_1713 hypothetical protein; endoribonuclease L-PSP complement(1984767..1985114) Escherichia coli DH1 12705435 YP_006091782.1 CDS EcDH1_1835 NC_017625.1 1985243 1987153 D SMART: helicase c2; DEAD-like helicases; KEGG: sbo:SBO_1280 putative enzyme; helicase c2 1985243..1987153 Escherichia coli DH1 12705436 YP_006091783.1 CDS EcDH1_1836 NC_017625.1 1987211 1987906 D PFAM: peptidase M22 glycoprotease; KEGG: sfv:SFV_1422 hypothetical protein; peptidase M22 glycoprotease 1987211..1987906 Escherichia coli DH1 12705437 YP_006091784.1 CDS EcDH1_1837 NC_017625.1 1987946 1988527 D TIGRFAM: outer membrane lipoprotein, Slp family; PFAM: outer membrane lipoprotein Slp; KEGG: sfv:SFV_1423 putative outer membrane protein; outer membrane lipoprotein, Slp family 1987946..1988527 Escherichia coli DH1 12705438 YP_006091785.1 CDS EcDH1_1838 NC_017625.1 1988666 1990417 D PFAM: AMP-dependent synthetase and ligase; KEGG: sfx:S1538 long-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase 1988666..1990417 Escherichia coli DH1 12705439 YP_006091786.1 CDS EcDH1_1839 NC_017625.1 1990499 1991614 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; KEGG: sfv:SFV_1425 ribonuclease D; ribonuclease D 1990499..1991614 Escherichia coli DH1 12705440 YP_006091787.1 CDS EcDH1_1840 NC_017625.1 1991668 1992633 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ssn:SSON_1358 putative diogenase beta subunit; ferredoxin complement(1991668..1992633) Escherichia coli DH1 12705441 YP_006091788.1 CDS EcDH1_1841 NC_017625.1 1992689 1993813 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: ssn:SSON_1359 hypothetical protein; Rieske (2Fe-2S) domain-containing protein complement(1992689..1993813) Escherichia coli DH1 12705442 YP_006091789.1 CDS EcDH1_1842 NC_017625.1 1993845 1995275 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sbo:SBO_1287 putative transporter; choline/carnitine/betaine transporter complement(1993845..1995275) Escherichia coli DH1 12705443 YP_006091790.1 CDS EcDH1_1843 NC_017625.1 1995481 1996566 R KEGG: ssn:SSON_1361 putative tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(1995481..1996566) Escherichia coli DH1 12705444 YP_006091791.1 CDS EcDH1_1844 NC_017625.1 1996669 1997592 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_1289 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 1996669..1997592 Escherichia coli DH1 12705445 YP_006091792.1 CDS EcDH1_1845 NC_017625.1 1997719 1998357 D PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sdy:SDY_1698 leucine export protein LeuE; lysine exporter protein LysE/YggA 1997719..1998357 Escherichia coli DH1 12705446 YP_006091793.1 CDS EcDH1_1846 NC_017625.1 1998530 1998889 D PFAM: Protein of unknown function DUF1971; KEGG: sdy:SDY_1697 hypothetical protein; hypothetical protein 1998530..1998889 Escherichia coli DH1 12705447 YP_006091794.1 CDS EcDH1_1847 NC_017625.1 1998893 1999075 D PFAM: Domain of unknown function DUF1869; KEGG: sdy:SDY_1696 hypothetical protein; hypothetical protein 1998893..1999075 Escherichia coli DH1 12705448 YP_006091795.1 CDS EcDH1_1848 NC_017625.1 1999223 1999471 D PFAM: Transglycosylase-associated protein; KEGG: sdy:SDY_1695 hypothetical protein; transglycosylase 1999223..1999471 Escherichia coli DH1 12705449 YP_006091796.1 CDS EcDH1_1849 NC_017625.1 1999738 2000763 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: sdy:SDY_1692 hypothetical protein; GAF sensor-containing diguanylate cyclase complement(1999738..2000763) Escherichia coli DH1 12705450 YP_006091797.1 CDS EcDH1_1850 NC_017625.1 2000946 2001200 D PFAM: protein of unknown function DUF333; KEGG: sfx:S1546 hypothetical protein; hypothetical protein 2000946..2001200 Escherichia coli DH1 12705451 YP_006091798.1 CDS EcDH1_1851 NC_017625.1 2001222 2001569 R PFAM: protein of unknown function DUF488; KEGG: ssn:SSON_1369 hypothetical protein; hypothetical protein complement(2001222..2001569) Escherichia coli DH1 12705452 YP_006091799.1 CDS EcDH1_1852 NC_017625.1 2001624 2002805 R TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1302 putative amino acid/amine transport protein; cyanate transporter complement(2001624..2002805) Escherichia coli DH1 12705453 YP_006091800.1 CDS EcDH1_1853 NC_017625.1 2002905 2003723 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbo:SBO_1303 putative AraC-type regulatory protein; AraC family transcriptional regulator 2002905..2003723 Escherichia coli DH1 12705454 YP_006091801.1 CDS EcDH1_1854 NC_017625.1 2003680 2004126 R PFAM: protein of unknown function DUF441; KEGG: sbo:SBO_1304 hypothetical protein; hypothetical protein complement(2003680..2004126) Escherichia coli DH1 12705455 YP_006091802.1 CDS EcDH1_1855 NC_017625.1 2004401 2004904 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sdy:SDY_1685 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(2004401..2004904) Escherichia coli DH1 12705456 YP_006091803.1 CDS EcDH1_1856 NC_017625.1 2004947 2006437 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1375 hypothetical protein; diguanylate cyclase complement(2004947..2006437) Escherichia coli DH1 12705457 YP_006091804.1 CDS EcDH1_1857 NC_017625.1 2006618 2008093 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1377 hypothetical protein; diguanylate cyclase complement(2006618..2008093) Escherichia coli DH1 12705458 YP_006091805.1 CDS EcDH1_1858 NC_017625.1 2008240 2009523 R PFAM: protein of unknown function DUF444; KEGG: sbo:SBO_1309 hypothetical protein; hypothetical protein complement(2008240..2009523) Escherichia coli DH1 12705459 YP_006091806.1 CDS EcDH1_1859 NC_017625.1 2009636 2011570 R PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: sbo:SBO_1310 hypothetical protein; putative serine protein kinase PrkA complement(2009636..2011570) Escherichia coli DH1 12705460 YP_006091807.1 CDS EcDH1_1860 NC_017625.1 2012006 2012752 D PFAM: MltA-interacting MipA family protein; KEGG: sdy:SDY_1485 hypothetical protein; MltA-interacting MipA family protein 2012006..2012752 Escherichia coli DH1 12705461 YP_006091808.1 CDS EcDH1_1861 NC_017625.1 2012842 2013696 D PFAM: aldo/keto reductase; KEGG: ssn:SSON_1381 putative an aldehyde reductase; aldo/keto reductase 2012842..2013696 Escherichia coli DH1 12705462 YP_006091809.1 CDS EcDH1_1862 NC_017625.1 2013744 2014628 R PFAM: Aldose 1-epimerase; KEGG: sfv:SFV_1435 hypothetical protein; aldose 1-epimerase complement(2013744..2014628) Escherichia coli DH1 12705463 YP_006091810.1 CDS EcDH1_1863 NC_017625.1 2014712 2015707 R TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: sdy:SDY_1488 glyceraldehyde-3-phosphate dehydrogenase A; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2014712..2015707) Escherichia coli DH1 12705464 YP_006091811.1 CDS EcDH1_1864 NC_017625.1 2016049 2016462 D TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: ssn:SSON_1385 methionine sulfoxide reductase B; methionine-R-sulfoxide reductase 2016049..2016462 Escherichia coli DH1 12705465 YP_006091812.1 CDS EcDH1_1865 NC_017625.1 2016504 2016776 D PFAM: protein of unknown function DUF1315; KEGG: sbc:SbBS512_E2024 hypothetical protein; hypothetical protein 2016504..2016776 Escherichia coli DH1 12705466 YP_006091813.1 CDS EcDH1_1866 NC_017625.1 2017146 2018222 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sdy:SDY_1491 putative oxidoreductase; alcohol dehydrogenase 2017146..2018222 Escherichia coli DH1 12705467 YP_006091814.1 CDS EcDH1_1867 NC_017625.1 2018249 2019628 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_1492 putative transport protein; major facilitator superfamily protein 2018249..2019628 Escherichia coli DH1 12705468 YP_006091815.1 CDS EcDH1_1868 NC_017625.1 2019645 2020688 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: set:SEN1756 putative oxidoreductase; alcohol dehydrogenase 2019645..2020688 Escherichia coli DH1 12705469 YP_006091816.1 CDS EcDH1_1869 NC_017625.1 2020709 2021545 D KEGG: sfx:S1565 putative aldolase; TIGRFAM: ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase 2020709..2021545 Escherichia coli DH1 12705470 YP_006091817.1 CDS EcDH1_1870 NC_017625.1 2021550 2022497 D PFAM: PfkB domain protein; KEGG: sfx:S1566 putative kinase; PfkB domain-containing protein 2021550..2022497 Escherichia coli DH1 12705471 YP_006091818.1 CDS EcDH1_1871 NC_017625.1 2022507 2023487 D PFAM: aldo/keto reductase; KEGG: sfv:SFV_1444 hypothetical protein; aldo/keto reductase 2022507..2023487 Escherichia coli DH1 12705472 YP_006091819.1 CDS EcDH1_1872 NC_017625.1 2023624 2024382 D PFAM: regulatory protein DeoR; KEGG: sdy:SDY_1498 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 2023624..2024382 Escherichia coli DH1 12705473 YP_006091820.1 CDS EcDH1_1873 NC_017625.1 2024499 2025857 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sfx:S1569 putative transport protein; major facilitator superfamily protein 2024499..2025857 Escherichia coli DH1 12705474 YP_006091821.1 CDS EcDH1_1874 NC_017625.1 2025950 2026591 R PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1387 nicotinamidase/pyrazinamidase; nicotinamidase complement(2025950..2026591) Escherichia coli DH1 12705475 YP_006091822.1 CDS EcDH1_1875 NC_017625.1 2026602 2027618 R TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase; KEGG: ssn:SSON_1388 cytoplasmic asparaginase I; type I L-asparaginase complement(2026602..2027618) Escherichia coli DH1 12705476 YP_006091823.1 CDS EcDH1_1876 NC_017625.1 2027785 2029641 R KEGG: sbc:SbBS512_E2021 protease 4; TIGRFAM: signal peptide peptidase SppA, 67K type; signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; signal peptide peptidase SppA, 67K type complement(2027785..2029641) Escherichia coli DH1 12705477 YP_006091824.1 CDS EcDH1_1877 NC_017625.1 2029802 2030353 D PFAM: nitroreductase; KEGG: sbo:SBO_1322 hypothetical protein; nitroreductase 2029802..2030353 Escherichia coli DH1 12705478 YP_006091825.1 CDS EcDH1_1878 NC_017625.1 2030470 2031513 D TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: sdy:SDY_1509 selenophosphate synthetase; selenide, water dikinase 2030470..2031513 Escherichia coli DH1 12705479 YP_006091826.1 CDS EcDH1_1879 NC_017625.1 2031518 2033479 D KEGG: sbo:SBO_1324 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III 2031518..2033479 Escherichia coli DH1 12705480 YP_006091827.1 CDS EcDH1_1880 NC_017625.1 2033607 2034647 D KEGG: sfl:SF1461 hypothetical protein; hypothetical protein 2033607..2034647 Escherichia coli DH1 12705481 YP_006091828.1 CDS EcDH1_1881 NC_017625.1 2034764 2036107 R PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: ssn:SSON_1395 glutamate dehydrogenase; glutamate dehydrogenase complement(2034764..2036107) Escherichia coli DH1 12705482 YP_006091829.1 CDS EcDH1_1882 NC_017625.1 2036343 2036615 D PFAM: protein of unknown function DUF1496; KEGG: sbc:SbBS512_E2012 hypothetical protein; hypothetical protein 2036343..2036615 Escherichia coli DH1 12705483 YP_006091830.1 CDS EcDH1_1883 NC_017625.1 2036581 2036988 R PFAM: NUDIX hydrolase; KEGG: sdy:SDY_1516 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; NUDIX hydrolase complement(2036581..2036988) Escherichia coli DH1 12705484 YP_006091831.1 CDS EcDH1_1884 NC_017625.1 2037075 2037695 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sfx:S1582 putative cytochrome oxidase; CDP-alcohol phosphatidyltransferase 2037075..2037695 Escherichia coli DH1 12705485 YP_006091832.1 CDS EcDH1_1885 NC_017625.1 2037704 2039011 R PFAM: Rhodanese domain protein; KEGG: sbo:SBO_1332 putative thiosulfate sulfur transferase; Rhodanese domain-containing protein complement(2037704..2039011) Escherichia coli DH1 12705486 YP_006091833.1 CDS EcDH1_1886 NC_017625.1 2039078 2039731 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_1462 putative ATP-binding component of a transport system; ABC transporter complement(2039078..2039731) Escherichia coli DH1 12705487 YP_006091834.1 CDS EcDH1_1887 NC_017625.1 2039731 2041266 R KEGG: sbc:SbBS512_E2004 ABC transporter, permease protein; ABC transporter permease complement(2039731..2041266) Escherichia coli DH1 12705488 YP_006091835.1 CDS EcDH1_1888 NC_017625.1 2041239 2042405 R PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1403 hypothetical protein; extracellular solute-binding protein complement(2041239..2042405) Escherichia coli DH1 12705489 YP_006091836.1 CDS EcDH1_1889 NC_017625.1 2042415 2042963 R PFAM: Carboxymuconolactone decarboxylase; KEGG: sbc:SbBS512_E2002 carboxymuconolactone decarboxylase family protein; Carboxymuconolactone decarboxylase complement(2042415..2042963) Escherichia coli DH1 12705490 YP_006091837.1 CDS EcDH1_1890 NC_017625.1 2042963 2043670 R PFAM: SNARE associated Golgi protein; KEGG: sbc:SbBS512_E2001 hypothetical protein; hypothetical protein complement(2042963..2043670) Escherichia coli DH1 12705491 YP_006091838.1 CDS EcDH1_1891 NC_017625.1 2043685 2044362 R KEGG: ssn:SSON_1406 hypothetical protein; hypothetical protein complement(2043685..2044362) Escherichia coli DH1 12705492 YP_006091839.1 CDS EcDH1_1892 NC_017625.1 2044367 2045077 R PFAM: SNARE associated Golgi protein; KEGG: ssn:SSON_1407 hypothetical protein; hypothetical protein complement(2044367..2045077) Escherichia coli DH1 12705493 YP_006091840.1 CDS EcDH1_1893 NC_017625.1 2045244 2046062 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sbc:SbBS512_E1997 exodeoxyribonuclease III; exodeoxyribonuclease III complement(2045244..2046062) Escherichia coli DH1 12705494 YP_006091841.1 CDS EcDH1_1894 NC_017625.1 2046496 2047716 D TIGRFAM: acetylornithine and succinylornithine aminotransferase; succinylornithine transaminase family; PFAM: aminotransferase class I and II; aminotransferase class-III; KEGG: ssn:SSON_1409 bifunctional succinylornithine transaminase/acetylornithine transaminase; acetylornithine and succinylornithine aminotransferase 2046496..2047716 Escherichia coli DH1 12705495 YP_006091842.1 CDS EcDH1_1895 NC_017625.1 2047713 2048747 D KEGG: sdy:SDY_1530 arginine succinyltransferase; TIGRFAM: arginine/ornithine succinyltransferase subunit; arginine N-succinyltransferase; PFAM: arginine N-succinyltransferase beta subunit; arginine N-succinyltransferase 2047713..2048747 Escherichia coli DH1 12705496 YP_006091843.1 CDS EcDH1_1896 NC_017625.1 2048744 2050222 D TIGRFAM: succinylglutamic semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_1474 succinylglutamic semialdehyde dehydrogenase; succinylglutamic semialdehyde dehydrogenase 2048744..2050222 Escherichia coli DH1 12705497 YP_006091844.1 CDS EcDH1_1897 NC_017625.1 2050219 2051562 D TIGRFAM: succinylarginine dihydrolase; PFAM: Succinylarginine dihydrolase; KEGG: sbo:SBO_1345 succinylarginine dihydrolase; succinylarginine dihydrolase 2050219..2051562 Escherichia coli DH1 12705498 YP_006091845.1 CDS EcDH1_1898 NC_017625.1 2051555 2052523 D TIGRFAM: succinylglutamate desuccinylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: sbc:SbBS512_E1990 succinylglutamate desuccinylase; succinylglutamate desuccinylase 2051555..2052523 Escherichia coli DH1 12705499 YP_006091846.1 CDS EcDH1_1899 NC_017625.1 2052853 2053338 D PFAM: protein of unknown function Spy-related; KEGG: sfv:SFV_1477 periplasmic protein; hypothetical protein 2052853..2053338 Escherichia coli DH1 12705500 YP_006091847.1 CDS EcDH1_1900 NC_017625.1 2053541 2054116 D PFAM: protein of unknown function DUF886; KEGG: sfv:SFV_1478 hypothetical protein; hypothetical protein 2053541..2054116 Escherichia coli DH1 12705501 YP_006091848.1 CDS EcDH1_1901 NC_017625.1 2054076 2054963 R PFAM: Excinuclease ABC C subunit domain protein; KEGG: ssn:SSON_1417 endonuclease of nucleotide excision repair; Excinuclease ABC C subunit domain-containing protein complement(2054076..2054963) Escherichia coli DH1 12705502 YP_006091849.1 CDS EcDH1_1902 NC_017625.1 2055193 2056020 R TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: sbo:SBO_1350 NAD synthetase; NAD+ synthetase complement(2055193..2056020) Escherichia coli DH1 12705503 YP_006091850.1 CDS EcDH1_1903 NC_017625.1 2056222 2056560 D PFAM: SmpA/OmlA domain protein; KEGG: sdy:SDY_1541 DNA-binding transcriptional activator; SmpA/OmlA domain-containing protein 2056222..2056560 Escherichia coli DH1 12705504 YP_006091851.1 CDS EcDH1_1904 NC_017625.1 2056859 2057179 D TIGRFAM: PTS system, lactose/cellobiose family IIB subunit; PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: sbo:SBO_1352 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIB; PTS system lactose/cellobiose family transporter subunit IIB 2056859..2057179 Escherichia coli DH1 12705505 YP_006091852.1 CDS EcDH1_1905 NC_017625.1 2057264 2058622 D TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PTS system, cellobiose-specific IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: ssn:SSON_1421 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIC; PTS system lactose/cellobiose family transporter subunit IIC 2057264..2058622 Escherichia coli DH1 12705506 YP_006091853.1 CDS EcDH1_1906 NC_017625.1 2058673 2059023 D TIGRFAM: PTS system, lactose-specific IIa component; PFAM: phosphotransferase system PTS lactose/cellobiose-specific IIA subunit; KEGG: ssn:SSON_1422 N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA; PTS system, lactose-specific IIa component 2058673..2059023 Escherichia coli DH1 12705507 YP_006091854.1 CDS EcDH1_1907 NC_017625.1 2059034 2059873 D PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: ssn:SSON_1423 DNA-binding transcriptional dual regulator; AraC family transcriptional regulator 2059034..2059873 Escherichia coli DH1 12705508 YP_006091855.1 CDS EcDH1_1908 NC_017625.1 2059978 2061330 D PFAM: glycoside hydrolase family 4; KEGG: ssn:SSON_1424 cryptic phospho-beta-glucosidase; glycoside hydrolase family protein 2059978..2061330 Escherichia coli DH1 12705509 YP_006091856.1 CDS EcDH1_1909 NC_017625.1 2061343 2062092 D PFAM: YdjC family protein; KEGG: ssn:SSON_1425 hypothetical protein; hypothetical protein 2061343..2062092 Escherichia coli DH1 12705510 YP_006091857.1 CDS EcDH1_1910 NC_017625.1 2062350 2064611 R PFAM: Catalase domain protein; KEGG: ssn:SSON_1426 hydroperoxidase II; catalase complement(2062350..2064611) Escherichia coli DH1 12705511 YP_006091858.1 CDS EcDH1_1911 NC_017625.1 2064794 2065057 D KEGG: ssn:SSON_1427 cell division modulator; cell division modulator 2064794..2065057 Escherichia coli DH1 12705512 YP_006091859.1 CDS EcDH1_1912 NC_017625.1 2065346 2066149 D KEGG: sfl:SF1498 hypothetical protein; hypothetical protein 2065346..2066149 Escherichia coli DH1 12705513 YP_006091860.1 CDS EcDH1_1913 NC_017625.1 2066153 2067544 R PFAM: sodium:dicarboxylate symporter; KEGG: sbo:SBO_1361 kinase fragment; sodium:dicarboxylate symporter complement(2066153..2067544) Escherichia coli DH1 12705514 YP_006091861.1 CDS EcDH1_1914 NC_017625.1 2067677 2068267 R PFAM: membrane-bound metal-dependent hydrolase; KEGG: ssn:SSON_1429 hypothetical protein; membrane-bound metal-dependent hydrolase complement(2067677..2068267) Escherichia coli DH1 12705515 YP_006091862.1 CDS EcDH1_1915 NC_017625.1 2068430 2069098 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbc:SbBS512_E1972 HAD-superfamily hydrolase, subfamily IA; HAD-superfamily hydrolase complement(2068430..2069098) Escherichia coli DH1 12705516 YP_006091863.1 CDS EcDH1_1916 NC_017625.1 2069245 2069781 D KEGG: sdy:SDY_1819 hypothetical protein; hypothetical protein 2069245..2069781 Escherichia coli DH1 12705517 YP_006091864.1 CDS EcDH1_1917 NC_017625.1 2069822 2070682 R PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: sdy:SDY_1818 hypothetical protein; fructosamine kinase complement(2069822..2070682) Escherichia coli DH1 12705518 YP_006091865.1 CDS EcDH1_1918 NC_017625.1 2070788 2071078 R KEGG: sdy:SDY_1817 hypothetical protein; hypothetical protein complement(2070788..2071078) Escherichia coli DH1 12705519 YP_006091866.1 CDS EcDH1_1919 NC_017625.1 2071179 2072108 R TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E1968 6-phosphofructokinase; 1-phosphofructokinase complement(2071179..2072108) Escherichia coli DH1 12705520 YP_006091867.1 CDS EcDH1_1920 NC_017625.1 2072395 2073153 D PFAM: protein of unknown function DUF481; KEGG: sbc:SbBS512_E1967 hypothetical protein; hypothetical protein 2072395..2073153 Escherichia coli DH1 12705521 YP_006091868.1 CDS EcDH1_1921 NC_017625.1 2073206 2073313 R KEGG: sbc:SbBS512_E1966 hypothetical protein; hypothetical protein complement(2073206..2073313) Escherichia coli DH1 12705522 YP_006091869.1 CDS EcDH1_1923 NC_017625.1 2075908 2077836 D TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); TGS domain protein; Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; KEGG: ssn:SSON_1439 threonyl-tRNA synthetase; threonyl-tRNA synthetase 2075908..2077836 Escherichia coli DH1 12705524 YP_006091870.1 CDS EcDH1_1924 NC_017625.1 2077840 2078382 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: stm:STM1334.c translation initiation factor IF-3; translation initiation factor IF-3 2077840..2078382 Escherichia coli DH1 12705525 YP_006091871.1 CDS EcDH1_1925 NC_017625.1 2078479 2078676 D PFAM: ribosomal protein L35; KEGG: kpn:KPN_02178 50S ribosomal protein L35; 50S ribosomal protein L35 2078479..2078676 Escherichia coli DH1 12705526 YP_006091872.1 CDS EcDH1_1926 NC_017625.1 2078729 2079085 D TIGRFAM: ribosomal protein L20; KEGG: cko:CKO_01742 50S ribosomal protein L20; 50S ribosomal protein L20 2078729..2079085 Escherichia coli DH1 12705527 YP_006091873.1 CDS EcDH1_1927 NC_017625.1 2079327 2079422 D hypothetical protein 2079327..2079422 Escherichia coli DH1 12705528 YP_006091874.1 CDS EcDH1_1928 NC_017625.1 2079536 2080519 D TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: sbo:SBO_1379 phenylalanyl-tRNA synthetase subunit alpha; phenylalanyl-tRNA synthetase subunit alpha 2079536..2080519 Escherichia coli DH1 12705529 YP_006091875.1 CDS EcDH1_1929 NC_017625.1 2080534 2082921 D KEGG: ssn:SSON_1445 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta 2080534..2082921 Escherichia coli DH1 12705530 YP_006091876.1 CDS EcDH1_1930 NC_017625.1 2082926 2083225 D TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_1807 integration host factor subunit alpha; integration host factor subunit alpha 2082926..2083225 Escherichia coli DH1 12705531 YP_006091877.1 CDS EcDH1_1931 NC_017625.1 2083326 2084306 D PFAM: transport system permease protein; KEGG: sfx:S1637 vtamin B12-transporter permease; transport system permease 2083326..2084306 Escherichia coli DH1 12705532 YP_006091878.1 CDS EcDH1_1932 NC_017625.1 2084369 2084920 D PFAM: glutathione peroxidase; KEGG: sfv:SFV_1513 putative glutathione peroxidase; glutathione peroxidase 2084369..2084920 Escherichia coli DH1 12705533 YP_006091879.1 CDS EcDH1_1933 NC_017625.1 2084920 2085669 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_1804 vitamin B12-transporter ATPase; ABC transporter 2084920..2085669 Escherichia coli DH1 12705534 YP_006091880.1 CDS EcDH1_1934 NC_017625.1 2085747 2086211 D PFAM: NLP/P60 protein; KEGG: ssn:SSON_1450 lipoprotein; NLP/P60 protein 2085747..2086211 Escherichia coli DH1 12705535 YP_006091881.1 CDS EcDH1_1935 NC_017625.1 2086458 2087171 D PFAM: EAL domain protein; KEGG: sbo:SBO_1421 hypothetical protein; diguanylate phosphodiesterase 2086458..2087171 Escherichia coli DH1 12705536 YP_006091882.1 CDS EcDH1_1936 NC_017625.1 2087234 2088670 D PFAM: protein of unknown function UPF0061; KEGG: sbc:SbBS512_E1910 hypothetical protein; hypothetical protein 2087234..2088670 Escherichia coli DH1 12705537 YP_006091883.1 CDS EcDH1_1937 NC_017625.1 2088674 2088865 R KEGG: sdy:SDY_1799 hypothetical protein; hypothetical protein complement(2088674..2088865) Escherichia coli DH1 12705538 YP_006091884.1 CDS EcDH1_1938 NC_017625.1 2088997 2090043 R KEGG: sdy:SDY_1798 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2088997..2090043) Escherichia coli DH1 12705539 YP_006091885.1 CDS EcDH1_1939 NC_017625.1 2090200 2091033 R PFAM: protein of unknown function DUF299; KEGG: sdy:SDY_1797 hypothetical protein; hypothetical protein complement(2090200..2091033) Escherichia coli DH1 12705540 YP_006091886.1 CDS EcDH1_1940 NC_017625.1 2091366 2093744 D TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing protein; pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: sfv:SFV_1522 phosphoenolpyruvate synthase; phosphoenolpyruvate synthase 2091366..2093744 Escherichia coli DH1 12705541 YP_006091887.1 CDS EcDH1_1941 NC_017625.1 2093801 2095447 R PFAM: AMP-dependent synthetase and ligase; KEGG: sbc:SbBS512_E1904 short-chain-fatty-acid--CoA ligase; AMP-dependent synthetase and ligase complement(2093801..2095447) Escherichia coli DH1 12705542 YP_006091888.1 CDS EcDH1_1942 NC_017625.1 2095504 2095797 R KEGG: sbc:SbBS512_E1903 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(2095504..2095797) Escherichia coli DH1 12705543 YP_006091889.1 CDS EcDH1_1943 NC_017625.1 2095794 2097083 R PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: sfv:SFV_1525 hypothetical protein; electron-transferring-flavoprotein dehydrogenase complement(2095794..2097083) Escherichia coli DH1 12705544 YP_006091890.1 CDS EcDH1_1944 NC_017625.1 2097139 2098077 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: sfx:S1650 electron transfer flavoprotein subunit YdiR; electron transfer flavoprotein subunit alpha complement(2097139..2098077) Escherichia coli DH1 12705545 YP_006091891.1 CDS EcDH1_1945 NC_017625.1 2098097 2098861 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sfx:S1651 putative electron transfer flavoprotein YdiQ; electron transfer flavoprotein subunit alpha/beta complement(2098097..2098861) Escherichia coli DH1 12705546 YP_006091892.1 CDS EcDH1_1946 NC_017625.1 2099177 2100088 D PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: sbc:SbBS512_E1899 transcriptional regulator, AraC family; AraC family transcriptional regulator 2099177..2100088 Escherichia coli DH1 12705547 YP_006091893.1 CDS EcDH1_1947 NC_017625.1 2100131 2101282 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sbc:SbBS512_E1898 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(2100131..2101282) Escherichia coli DH1 12705548 YP_006091894.1 CDS EcDH1_1948 NC_017625.1 2101296 2102891 R PFAM: coenzyme A transferase; KEGG: sbc:SbBS512_E1897 propionate CoA-transferase; coenzyme A transferase complement(2101296..2102891) Escherichia coli DH1 12705549 YP_006091895.1 CDS EcDH1_1949 NC_017625.1 2103034 2103792 R KEGG: sdy:SDY_1474 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type I; PFAM: dehydroquinase class I; 3-dehydroquinate dehydratase complement(2103034..2103792) Escherichia coli DH1 12705550 YP_006091896.1 CDS EcDH1_1950 NC_017625.1 2103823 2104689 R PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: sbc:SbBS512_E1895 putative shikimate 5-dehydrogenase; Quinate/shikimate dehydrogenase complement(2103823..2104689) Escherichia coli DH1 12705551 YP_006091897.1 CDS EcDH1_1951 NC_017625.1 2104701 2105966 R PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1463 putative amino acid/amine transport protein; major facilitator superfamily protein complement(2104701..2105966) Escherichia coli DH1 12705552 YP_006091898.1 CDS EcDH1_1952 NC_017625.1 2106193 2107407 R PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S1852 putative transport system permease protein; major facilitator superfamily protein complement(2106193..2107407) Escherichia coli DH1 12705553 YP_006091899.1 CDS EcDH1_1953 NC_017625.1 2107507 2107863 R PFAM: Domain of unknown function DUF1870; KEGG: sdy:SDY_1679 hypothetical protein; hypothetical protein complement(2107507..2107863) Escherichia coli DH1 12705554 YP_006091900.1 CDS EcDH1_1954 NC_017625.1 2108292 2109404 R PFAM: protein of unknown function UPF0118; KEGG: sdy:SDY_1676 predicted inner membrane protein; hypothetical protein complement(2108292..2109404) Escherichia coli DH1 12705555 YP_006091901.1 CDS EcDH1_1955 NC_017625.1 2109793 2112849 D PFAM: FAD linked oxidase domain protein; KEGG: sbc:SbBS512_E1888 oxidoreductase, FAD-binding; FAD linked oxidase domain-containing protein 2109793..2112849 Escherichia coli DH1 12705556 YP_006091902.1 CDS EcDH1_1956 NC_017625.1 2112846 2113256 D PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E1887 esterase YdiI; thioesterase superfamily protein 2112846..2113256 Escherichia coli DH1 12705557 YP_006091903.1 CDS EcDH1_1957 NC_017625.1 2113356 2113544 D KEGG: sbc:SbBS512_E1886 hypothetical protein; hypothetical protein 2113356..2113544 Escherichia coli DH1 12705558 YP_006091904.1 CDS EcDH1_1958 NC_017625.1 2114092 2114460 D TIGRFAM: FeS assembly scaffold SufA; iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sbo:SBO_1446 iron-sulfur cluster assembly scaffold protein; FeS assembly scaffold SufA 2114092..2114460 Escherichia coli DH1 12705559 YP_006091905.1 CDS EcDH1_1959 NC_017625.1 2114469 2115956 D TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sbo:SBO_1447 cysteine desulfurase activator complex subunit SufB; FeS assembly protein SufB 2114469..2115956 Escherichia coli DH1 12705560 YP_006091906.1 CDS EcDH1_1960 NC_017625.1 2115966 2116712 D KEGG: ssn:SSON_1474 cysteine desulfurase ATPase component; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 2115966..2116712 Escherichia coli DH1 12705561 YP_006091907.1 CDS EcDH1_1961 NC_017625.1 2116687 2117958 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: ssn:SSON_1475 cysteine desulfurase activator complex subunit SufD; FeS assembly protein SufD 2116687..2117958 Escherichia coli DH1 12705562 YP_006091908.1 CDS EcDH1_1962 NC_017625.1 2117955 2119175 D TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: ssn:SSON_1476 selenocysteine lyase; SufS subfamily cysteine desulfurase 2117955..2119175 Escherichia coli DH1 12705563 YP_006091909.1 CDS EcDH1_1963 NC_017625.1 2119188 2119604 D PFAM: Fe-S metabolism associated SufE; KEGG: sbc:SbBS512_E1880 cysteine desulfuration protein SufE; Fe-S metabolism associated SufE 2119188..2119604 Escherichia coli DH1 12705564 YP_006091910.1 CDS EcDH1_1964 NC_017625.1 2119753 2120757 D PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sfv:SFV_1701 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2119753..2120757 Escherichia coli DH1 12705565 YP_006091911.1 CDS EcDH1_1965 NC_017625.1 2120821 2121057 R PFAM: LPP repeat-containing protein; KEGG: sdy:SDY_1908 murein lipoprotein; LPP repeat-containing protein complement(2120821..2121057) Escherichia coli DH1 12705566 YP_006091912.1 CDS EcDH1_1966 NC_017625.1 2121368 2122780 R KEGG: sbc:SbBS512_E1877 pyruvate kinase I; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(2121368..2122780) Escherichia coli DH1 12705567 YP_006091913.1 CDS EcDH1_1967 NC_017625.1 2123337 2123546 D KEGG: sdy:SDY_1904 hypothetical protein; hypothetical protein 2123337..2123546 Escherichia coli DH1 12705568 YP_006091914.1 CDS EcDH1_1968 NC_017625.1 2124001 2124627 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 hypothetical protein; 4Fe-4S ferredoxin 2124001..2124627 Escherichia coli DH1 12705569 YP_006091915.1 CDS EcDH1_1969 NC_017625.1 2124648 2126750 D PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: ssn:SSON_1483 hypothetical protein; Aldehyde ferredoxin oxidoreductase 2124648..2126750 Escherichia coli DH1 12705570 YP_006091916.1 CDS EcDH1_1970 NC_017625.1 2126763 2127401 D KEGG: sbo:SBO_1460 hypothetical protein; hypothetical protein 2126763..2127401 Escherichia coli DH1 12705571 YP_006091917.1 CDS EcDH1_1971 NC_017625.1 2127465 2128133 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_1899 putative oxidoreductase, Fe-S subunit; 4Fe-4S ferredoxin 2127465..2128133 Escherichia coli DH1 12705572 YP_006091918.1 CDS EcDH1_1972 NC_017625.1 2128130 2128915 D PFAM: cytochrome B561; KEGG: sbc:SbBS512_E1870 nickel-dependent hydrogenase, b-type cytochrome subunit; cytochrome B561 2128130..2128915 Escherichia coli DH1 12705573 YP_006091919.1 CDS EcDH1_1973 NC_017625.1 2128967 2129731 D KEGG: sdy:SDY_1897 hypothetical protein; hypothetical protein 2128967..2129731 Escherichia coli DH1 12705574 YP_006091920.1 CDS EcDH1_1974 NC_017625.1 2129743 2131347 R KEGG: ssn:SSON_1488 hypothetical protein; hypothetical protein complement(2129743..2131347) Escherichia coli DH1 12705575 YP_006091921.1 CDS EcDH1_1975 NC_017625.1 2131473 2131778 R PFAM: Putative mono-oxygenase ydhR; KEGG: sbc:SbBS512_E1865 YdhR protein; Putative mono-oxygenase ydhR complement(2131473..2131778) Escherichia coli DH1 12705576 YP_006091922.1 CDS EcDH1_1976 NC_017625.1 2132351 2133607 D KEGG: sbc:SbBS512_E1862 hypothetical protein; hypothetical protein 2132351..2133607 Escherichia coli DH1 12705579 YP_006091923.1 CDS EcDH1_1977 NC_017625.1 2133648 2135021 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbo:SBO_1468 multidrug efflux protein; MATE efflux family protein complement(2133648..2135021) Escherichia coli DH1 12705580 YP_006091924.1 CDS EcDH1_1978 NC_017625.1 2135236 2135877 D TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: sdy:SDY_1888 riboflavin synthase subunit alpha; riboflavin synthase subunit alpha 2135236..2135877 Escherichia coli DH1 12705581 YP_006091925.1 CDS EcDH1_1979 NC_017625.1 2135917 2137065 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ssn:SSON_1495 cyclopropane fatty acyl phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(2135917..2137065) Escherichia coli DH1 12705582 YP_006091926.1 CDS EcDH1_1980 NC_017625.1 2137356 2138567 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1886 inner membrane transport protein YdhC; Bcr/CflA family multidrug resistance transporter complement(2137356..2138567) Escherichia coli DH1 12705583 YP_006091927.1 CDS EcDH1_1981 NC_017625.1 2138680 2139612 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E1856 transcriptional regulator, LysR family; LysR family transcriptional regulator 2138680..2139612 Escherichia coli DH1 12705584 YP_006091928.1 CDS EcDH1_1982 NC_017625.1 2139609 2140634 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E1857 transcriptional repressor PurR; LacI family transcriptional regulator complement(2139609..2140634) Escherichia coli DH1 12705585 YP_006091929.1 CDS EcDH1_1983 NC_017625.1 2141188 2142357 D PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1883 putative transport protein; major facilitator superfamily protein 2141188..2142357 Escherichia coli DH1 12705586 YP_006091930.1 CDS EcDH1_1984 NC_017625.1 2142519 2143100 R PFAM: manganese and iron superoxide dismutase; KEGG: sdy:SDY_1882 superoxide dismutase; Superoxide dismutase complement(2142519..2143100) Escherichia coli DH1 12705587 YP_006091931.1 CDS EcDH1_1985 NC_017625.1 2143228 2144043 R PFAM: NLP/P60 protein; KEGG: sbc:SbBS512_E1852 NlpC/P60 family protein; NLP/P60 protein complement(2143228..2144043) Escherichia coli DH1 12705588 YP_006091932.1 CDS EcDH1_1986 NC_017625.1 2144377 2144724 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: sdy:SDY_1880 hypothetical protein; glutaredoxin-like protein 2144377..2144724 Escherichia coli DH1 12705589 YP_006091933.1 CDS EcDH1_1987 NC_017625.1 2144775 2149391 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: AAA ATPase; DEAD-like helicases; KEGG: sbo:SBO_1482 member of ATP-dependent helicase superfamily II; DEAD/DEAH box helicase complement(2144775..2149391) Escherichia coli DH1 12705590 YP_006091934.1 CDS EcDH1_1988 NC_017625.1 2149484 2150131 R KEGG: sdy:SDY_1878 ribonuclease T; TIGRFAM: ribonuclease T; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; ribonuclease T complement(2149484..2150131) Escherichia coli DH1 12705591 YP_006091935.1 CDS EcDH1_1989 NC_017625.1 2150234 2150641 R KEGG: sdy:SDY_1877 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase complement(2150234..2150641) Escherichia coli DH1 12705592 YP_006091936.1 CDS EcDH1_1990 NC_017625.1 2150722 2151819 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ssn:SSON_1506 N-ethylmaleimide reductase, FMN-linked; NADH:flavin oxidoreductase complement(2150722..2151819) Escherichia coli DH1 12705593 YP_006091937.1 CDS EcDH1_1991 NC_017625.1 2151856 2152455 R PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E1841 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2151856..2152455) Escherichia coli DH1 12705594 YP_006091938.1 CDS EcDH1_1992 NC_017625.1 2152558 2152797 D PFAM: protein of unknown function DUF1289; KEGG: sdy:SDY_1873 hypothetical protein; hypothetical protein 2152558..2152797 Escherichia coli DH1 12705595 YP_006091939.1 CDS EcDH1_1993 NC_017625.1 2152846 2153742 D PFAM: aldo/keto reductase; KEGG: ssn:SSON_1509 hypothetical protein; aldo/keto reductase 2152846..2153742 Escherichia coli DH1 12705596 YP_006091940.1 CDS EcDH1_1994 NC_017625.1 2153823 2154344 D PFAM: superoxide dismutase copper/zinc binding; KEGG: sbc:SbBS512_E1838 superoxide dismutase (Cu-Zn); Superoxide dismutase 2153823..2154344 Escherichia coli DH1 12705597 YP_006091941.1 CDS EcDH1_1995 NC_017625.1 2154345 2156357 R PFAM: Fusaric acid resistance protein conserved region; KEGG: sbc:SbBS512_E1837 fusaric acid resistance domain protein; fusaric acid resistance protein complement(2154345..2156357) Escherichia coli DH1 12705598 YP_006091942.1 CDS EcDH1_1996 NC_017625.1 2156357 2157214 R PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E1836 auxiliary transport protein, membrane fusion protein (MFP) family; secretion protein HlyD family protein complement(2156357..2157214) Escherichia coli DH1 12705599 YP_006091943.1 CDS EcDH1_1997 NC_017625.1 2157217 2157453 R PFAM: protein of unknown function DUF1656; KEGG: ssn:SSON_1513 hypothetical protein; hypothetical protein complement(2157217..2157453) Escherichia coli DH1 12705600 YP_006091944.1 CDS EcDH1_1998 NC_017625.1 2157654 2158088 D PFAM: regulatory protein MarR; KEGG: sfv:SFV_1661 transcriptional regulator SlyA; MarR family transcriptional regulator 2157654..2158088 Escherichia coli DH1 12705601 YP_006091945.1 CDS EcDH1_1999 NC_017625.1 2158135 2158602 R PFAM: 17 kDa surface antigen; KEGG: sdy:SDY_1864 putative outer membrane protein; 17 kDa surface antigen complement(2158135..2158602) Escherichia coli DH1 12705602 YP_006091946.1 CDS EcDH1_2000 NC_017625.1 2158876 2159985 D PFAM: protein of unknown function UPF0075; KEGG: sdy:SDY_1863 anhydro-N-acetylmuramic acid kinase; hypothetical protein 2158876..2159985 Escherichia coli DH1 12705603 YP_006091947.1 CDS EcDH1_2001 NC_017625.1 2160089 2160412 D KEGG: sbc:SbBS512_E1831 putative lipoprotein; putative lipoprotein 2160089..2160412 Escherichia coli DH1 12705604 YP_006091948.1 CDS EcDH1_2002 NC_017625.1 2160471 2161127 D KEGG: sdy:SDY_1861 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; pyridoxamine 5'-phosphate oxidase 2160471..2161127 Escherichia coli DH1 12705605 YP_006091949.1 CDS EcDH1_2003 NC_017625.1 2161256 2162530 D KEGG: sbc:SbBS512_E1829 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase 2161256..2162530 Escherichia coli DH1 12705606 YP_006091950.1 CDS EcDH1_2004 NC_017625.1 2162592 2163452 D KEGG: sbo:SBO_1498 pyridoxamine kinase; TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; pyridoxal kinase 2162592..2163452 Escherichia coli DH1 12705607 YP_006091951.1 CDS EcDH1_2005 NC_017625.1 2163496 2164101 R PFAM: Glutathione S-transferase domain; KEGG: sdy:SDY_1858 glutathionine S-transferase; glutathione S-transferase complement(2163496..2164101) Escherichia coli DH1 12705608 YP_006091952.1 CDS EcDH1_2006 NC_017625.1 2164207 2165709 R KEGG: sbc:SbBS512_E1824 tripeptide permease TppB; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter complement(2164207..2165709) Escherichia coli DH1 12705609 YP_006091953.1 CDS EcDH1_2007 NC_017625.1 2165992 2166192 R KEGG: sbc:SbBS512_E1823 hypothetical protein; hypothetical protein complement(2165992..2166192) Escherichia coli DH1 12705610 YP_006091954.1 CDS EcDH1_2008 NC_017625.1 2166320 2166955 R KEGG: sbc:SbBS512_E1822 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; Endonuclease III/Nth; SMART: iron-sulfur cluster loop; endonuclease III complement(2166320..2166955) Escherichia coli DH1 12705611 YP_006091955.1 CDS EcDH1_2009 NC_017625.1 2166955 2167650 R TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: sdy:SDY_1855 SoxR-reducing system protein RsxE; RnfABCDGE type electron transport complex subunit E complement(2166955..2167650) Escherichia coli DH1 12705612 YP_006091956.1 CDS EcDH1_2010 NC_017625.1 2167654 2168274 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: sbc:SbBS512_E1820 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G complement(2167654..2168274) Escherichia coli DH1 12705613 YP_006091957.1 CDS EcDH1_2011 NC_017625.1 2168278 2169336 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: sfv:SFV_1647 electron transport complex protein RnfD; RnfABCDGE type electron transport complex subunit D complement(2168278..2169336) Escherichia coli DH1 12705614 YP_006091958.1 CDS EcDH1_2012 NC_017625.1 2169337 2171559 R TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: ssn:SSON_1529 electron transport complex protein RnfC; RnfABCDGE type electron transport complex subunit C complement(2169337..2171559) Escherichia coli DH1 12705615 YP_006091959.1 CDS EcDH1_2013 NC_017625.1 2171552 2172130 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: ssn:SSON_1530 electron transport complex protein RnfB; RnfABCDGE type electron transport complex subunit B complement(2171552..2172130) Escherichia coli DH1 12705616 YP_006091960.1 CDS EcDH1_2014 NC_017625.1 2172130 2172711 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: sdy:SDY_1850 Na(+)-translocating NADH-quinone reductase subunit E; RnfABCDGE type electron transport complex subunit A complement(2172130..2172711) Escherichia coli DH1 12705617 YP_006091961.1 CDS EcDH1_2015 NC_017625.1 2172788 2173228 R KEGG: ssn:SSON_1532 hypothetical protein; hypothetical protein complement(2172788..2173228) Escherichia coli DH1 12705618 YP_006091962.1 CDS EcDH1_2016 NC_017625.1 2173314 2173529 R PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_1848 OriC-binding nucleoid-associated protein; hemolysin expression modulating family protein complement(2173314..2173529) Escherichia coli DH1 12705619 YP_006091963.1 CDS EcDH1_2017 NC_017625.1 2173802 2173957 R KEGG: cko:CKO_01632 hypothetical protein; hypothetical protein complement(2173802..2173957) Escherichia coli DH1 12705620 YP_006091964.1 CDS EcDH1_2018 NC_017625.1 2174170 2175210 D PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: sbo:SBO_1510 putative oxidoreductase; oxidoreductase domain-containing protein 2174170..2175210 Escherichia coli DH1 12705621 YP_006091965.1 CDS EcDH1_2019 NC_017625.1 2175244 2176245 R KEGG: sdy:SDY_1846 adenosine deaminase; TIGRFAM: adenosine deaminase; PFAM: adenosine/AMP deaminase; adenosine deaminase complement(2175244..2176245) Escherichia coli DH1 12705622 YP_006091966.1 CDS EcDH1_2020 NC_017625.1 2176349 2177521 R PFAM: aminotransferase class I and II; KEGG: sbc:SbBS512_E1810 maltose regulon modulator MalY; class I and II aminotransferase complement(2176349..2177521) Escherichia coli DH1 12705623 YP_006091967.1 CDS EcDH1_2021 NC_017625.1 2177531 2179123 R TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, maltose and glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_1537 bifunctional maltose and glucose-specific PTS system components IICB; PTS system maltose and glucose-specific transporter subunit IIBC complement(2177531..2179123) Escherichia coli DH1 12705624 YP_006091968.1 CDS EcDH1_2022 NC_017625.1 2179298 2180326 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sfx:S1777 DNA-binding transcriptional repressor MalI; LacI family transcriptional regulator 2179298..2180326 Escherichia coli DH1 12705625 YP_006091969.1 CDS EcDH1_2023 NC_017625.1 2180438 2181205 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_1838 7-alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase SDR 2180438..2181205 Escherichia coli DH1 12705626 YP_006091970.1 CDS EcDH1_2024 NC_017625.1 2181438 2182016 D PFAM: regulatory protein TetR; KEGG: sdy:SDY_1837 repressor for uid operon; TetR family transcriptional regulator 2181438..2182016 Escherichia coli DH1 12705627 YP_006091971.1 CDS EcDH1_2025 NC_017625.1 2182407 2184218 D PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: ssn:SSON_1543 beta-D-glucuronidase; Beta-glucuronidase 2182407..2184218 Escherichia coli DH1 12705628 YP_006091972.1 CDS EcDH1_2026 NC_017625.1 2184215 2185588 D TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1544 glucuronide transporter; sugar (Glycoside-Pentoside-Hexuronide) transporter 2184215..2185588 Escherichia coli DH1 12705629 YP_006091973.1 CDS EcDH1_2027 NC_017625.1 2185627 2186892 D PFAM: outer membrane porin; KEGG: sbo:SBO_1521 putative outer membrane porin protein; outer membrane porin 2185627..2186892 Escherichia coli DH1 12705630 YP_006091974.1 CDS EcDH1_2028 NC_017625.1 2186953 2187048 R hypothetical protein complement(2186953..2187048) Escherichia coli DH1 12705631 YP_006091975.1 CDS EcDH1_2029 NC_017625.1 2187118 2188626 R PFAM: protein of unknown function DUF945; KEGG: sbc:SbBS512_E1800 hypothetical protein; hypothetical protein complement(2187118..2188626) Escherichia coli DH1 12705632 YP_006091976.1 CDS EcDH1_2030 NC_017625.1 2188727 2189902 R KEGG: sfv:SFV_1629 mannose-6-phosphate isomerase; TIGRFAM: mannose-6-phosphate isomerase, class I; PFAM: mannose-6-phosphate isomerase type I; mannose-6-phosphate isomerase complement(2188727..2189902) Escherichia coli DH1 12705633 YP_006091977.1 CDS EcDH1_2031 NC_017625.1 2190101 2191747 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sfv:SFV_1628 fumarate hydratase class I, aerobic; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 2190101..2191747 Escherichia coli DH1 12705634 YP_006091978.1 CDS EcDH1_2032 NC_017625.1 2191890 2193293 D TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; fumarate hydratase class II; KEGG: sbc:SbBS512_E1796 fumarate hydratase; class II fumarate hydratase 2191890..2193293 Escherichia coli DH1 12705635 YP_006091979.1 CDS EcDH1_2033 NC_017625.1 2193290 2194219 R TIGRFAM: DNA replication terminus site-binding protein; PFAM: site-binding protein DNA replication region; KEGG: ssn:SSON_1550 DNA replication terminus site-binding protein; DNA replication terminus site-binding protein complement(2193290..2194219) Escherichia coli DH1 12705636 YP_006091980.1 CDS EcDH1_2034 NC_017625.1 2194295 2195596 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_1825 sensor protein RstB; histidine kinase complement(2194295..2195596) Escherichia coli DH1 12705637 YP_006091981.1 CDS EcDH1_2035 NC_017625.1 2195600 2196319 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_1552 DNA-binding response regulator in two-component regulatory system with RstB; winged helix family two component transcriptional regulator complement(2195600..2196319) Escherichia coli DH1 12705638 YP_006091982.1 CDS EcDH1_2036 NC_017625.1 2196448 2196783 D PFAM: GlpM family protein; KEGG: sdy:SDY_1546 hypothetical protein; GlpM family protein 2196448..2196783 Escherichia coli DH1 12705639 YP_006091983.1 CDS EcDH1_2037 NC_017625.1 2196780 2197502 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sdy:SDY_1547 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR complement(2196780..2197502) Escherichia coli DH1 12705640 YP_006091984.1 CDS EcDH1_2038 NC_017625.1 2197539 2198921 R TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: sfv:SFV_1620 putative arginine/ornithine antiporter; arginine/ornithine antiporter complement(2197539..2198921) Escherichia coli DH1 12705641 YP_006091985.1 CDS EcDH1_2039 NC_017625.1 2199107 2200051 R PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_1549 hypothetical protein; hypothetical protein complement(2199107..2200051) Escherichia coli DH1 12705642 YP_006091986.1 CDS EcDH1_2040 NC_017625.1 2200575 2202107 D KEGG: ssn:SSON_1557 NAD(P) transhydrogenase subunit alpha; TIGRFAM: NAD(P) transhydrogenase, alpha subunit; PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha 2200575..2202107 Escherichia coli DH1 12705643 YP_006091987.1 CDS EcDH1_2041 NC_017625.1 2202118 2203506 D PFAM: NAD(P) transhydrogenase beta subunit; KEGG: sdy:SDY_1551 pyridine nucleotide transhydrogenase; NAD(P)(+) transhydrogenase 2202118..2203506 Escherichia coli DH1 12705644 YP_006091988.1 CDS EcDH1_2042 NC_017625.1 2203531 2204565 R PFAM: protein of unknown function UPF0118; KEGG: sbc:SbBS512_E1787 putative permease, PerM family; hypothetical protein complement(2203531..2204565) Escherichia coli DH1 12705645 YP_006091989.1 CDS EcDH1_2043 NC_017625.1 2204977 2205342 D PFAM: small multidrug resistance protein; KEGG: sdy:SDY_1553 multidrug efflux system protein MdtJ; small multidrug resistance protein 2204977..2205342 Escherichia coli DH1 12705646 YP_006091990.1 CDS EcDH1_2044 NC_017625.1 2205329 2205658 D PFAM: small multidrug resistance protein; KEGG: sbc:SbBS512_E1785 multidrug resistance protein MdtI; small multidrug resistance protein 2205329..2205658 Escherichia coli DH1 12705647 YP_006091991.1 CDS EcDH1_2045 NC_017625.1 2205697 2206518 R PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: sfv:SFV_1613 hypothetical protein; peptidase S1 and S6 chymotrypsin/Hap complement(2205697..2206518) Escherichia coli DH1 12705648 YP_006091992.1 CDS EcDH1_2046 NC_017625.1 2206794 2207102 R PFAM: Acid shock repeat protein; KEGG: sdy:SDY_1556 acid shock protein precursor; Acid shock repeat protein complement(2206794..2207102) Escherichia coli DH1 12705649 YP_006091993.1 CDS EcDH1_2047 NC_017625.1 2207526 2208779 R PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_1568 putative transport protein; major facilitator superfamily protein complement(2207526..2208779) Escherichia coli DH1 12705650 YP_006091994.1 CDS EcDH1_2048 NC_017625.1 2208886 2209779 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_1569 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2208886..2209779 Escherichia coli DH1 12705651 YP_006091995.1 CDS EcDH1_2049 NC_017625.1 2209914 2211134 D PFAM: ROK family protein; KEGG: sbc:SbBS512_E1780 transcriptional regulator Mic; ROK family protein 2209914..2211134 Escherichia coli DH1 12705652 YP_006091996.1 CDS EcDH1_2050 NC_017625.1 2211259 2211954 D KEGG: sbc:SbBS512_E1778 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase 2211259..2211954 Escherichia coli DH1 12705653 YP_006091997.1 CDS EcDH1_2051 NC_017625.1 2211907 2213163 R PFAM: Chloride channel core; KEGG: sbo:SBO_1544 putative voltage-gated ClC-type chloride channel ClcB; chloride channel protein complement(2211907..2213163) Escherichia coli DH1 12705654 YP_006091998.1 CDS EcDH1_2052 NC_017625.1 2213358 2213972 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: ssn:SSON_1573 twin-argninine leader-binding protein DmsD; cytoplasmic chaperone TorD family protein complement(2213358..2213972) Escherichia coli DH1 12705655 YP_006091999.1 CDS EcDH1_2053 NC_017625.1 2214015 2214869 R PFAM: DMSO reductase anchor subunit (DmsC); KEGG: sbo:SBO_1546 putative DMSO reductase anchor subunit; DMSO reductase anchor subunit DmsC complement(2214015..2214869) Escherichia coli DH1 12705656 YP_006092000.1 CDS EcDH1_2054 NC_017625.1 2214871 2215488 R TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sdy:SDY_1567 putative oxidoreductase, Fe-S subunit; dimethylsulfoxide reductase subunit B complement(2214871..2215488) Escherichia coli DH1 12705657 YP_006092001.1 CDS EcDH1_2055 NC_017625.1 2215499 2217895 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbo:SBO_1548 putative oxidoreductase, major subunit; anaerobic dimethyl sulfoxide reductase subunit A complement(2215499..2217895) Escherichia coli DH1 12705658 YP_006092002.1 CDS EcDH1_2056 NC_017625.1 2217983 2220409 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sbc:SbBS512_E1773 anaerobic dimethyl sulfoxide reductase, A subunit YnfE; anaerobic dimethyl sulfoxide reductase subunit A complement(2217983..2220409) Escherichia coli DH1 12705659 YP_006092003.1 CDS EcDH1_2057 NC_017625.1 2220608 2220913 R PFAM: protein of unknown function DUF1161; KEGG: sfv:SFV_1558 hypothetical protein; hypothetical protein complement(2220608..2220913) Escherichia coli DH1 12705660 YP_006092004.1 CDS EcDH1_2058 NC_017625.1 2220985 2221731 D PFAM: protein of unknown function UPF0257; KEGG: sbc:SbBS512_E1771 hypothetical protein; hypothetical protein 2220985..2221731 Escherichia coli DH1 12705661 YP_006092005.1 CDS EcDH1_2059 NC_017625.1 2221734 2222294 R PFAM: GCN5-related N-acetyltransferase; KEGG: cko:CKO_01578 hypothetical protein; N-acetyltransferase GCN5 complement(2221734..2222294) Escherichia coli DH1 12705662 YP_006092006.1 CDS EcDH1_2060 NC_017625.1 2222329 2222670 R PFAM: protein of unknown function DUF1283; KEGG: sfv:SFV_1561 hypothetical protein; hypothetical protein complement(2222329..2222670) Escherichia coli DH1 12705663 YP_006092007.1 CDS EcDH1_2061 NC_017625.1 2222805 2223131 D PFAM: protein of unknown function UPF0060; KEGG: sdy:SDY_1577 hypothetical protein; hypothetical protein 2222805..2223131 Escherichia coli DH1 12705664 YP_006092008.1 CDS EcDH1_2062 NC_017625.1 2223337 2224551 D PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sfx:S1718 starvation sensing protein; mandelate racemase/muconate lactonizing protein 2223337..2224551 Escherichia coli DH1 12705665 YP_006092009.1 CDS EcDH1_2063 NC_017625.1 2224563 2225582 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cko:CKO_01574 putative dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 2224563..2225582 Escherichia coli DH1 12705666 YP_006092010.1 CDS EcDH1_2064 NC_017625.1 2225770 2226966 R PFAM: integrase family protein; KEGG: stm:STM0893 putative integrase; integrase family protein complement(2225770..2226966) Escherichia coli DH1 12705667 YP_006092011.1 CDS EcDH1_2065 NC_017625.1 2226941 2227597 R PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit complement(2226941..2227597) Escherichia coli DH1 12705668 YP_006092012.1 CDS EcDH1_2067 NC_017625.1 2228493 2228684 R PFAM: protein of unknown function DUF1482; KEGG: cko:CKO_01911 hypothetical protein; hypothetical protein complement(2228493..2228684) Escherichia coli DH1 12705670 YP_006092013.1 CDS EcDH1_2068 NC_017625.1 2228681 2228869 R PFAM: DicB family protein; DicB family protein complement(2228681..2228869) Escherichia coli DH1 12705671 YP_006092014.1 CDS EcDH1_2069 NC_017625.1 2229269 2229433 D hypothetical protein 2229269..2229433 Escherichia coli DH1 12705672 YP_006092015.1 CDS EcDH1_2070 NC_017625.1 2229437 2229655 R hypothetical protein complement(2229437..2229655) Escherichia coli DH1 12705673 YP_006092016.1 CDS EcDH1_2071 NC_017625.1 2229685 2229813 R KEGG: ent:Ent638_0779 hypothetical protein; hypothetical protein complement(2229685..2229813) Escherichia coli DH1 12705674 YP_006092017.1 CDS EcDH1_2072 NC_017625.1 2229815 2229970 R PFAM: protein of unknown function DUF1391; KEGG: ssn:SSON_0728 hypothetical protein; hypothetical protein complement(2229815..2229970) Escherichia coli DH1 12705675 YP_006092018.1 CDS EcDH1_2073 NC_017625.1 2230137 2230544 R PFAM: helix-turn-helix domain protein; KEGG: sfl:SF0876 transcriptional repressor DicA; XRE family transcriptional regulator complement(2230137..2230544) Escherichia coli DH1 12705676 YP_006092019.1 CDS EcDH1_2074 NC_017625.1 2230628 2230858 D KEGG: sfv:SFV_0741 DNA-binding transcriptional regulator DicC; DNA-binding transcriptional regulator DicC 2230628..2230858 Escherichia coli DH1 12705677 YP_006092020.1 CDS EcDH1_2075 NC_017625.1 2230842 2231132 D KEGG: spq:SPAB_02261 hypothetical protein; hypothetical protein 2230842..2231132 Escherichia coli DH1 12705678 YP_006092021.1 CDS EcDH1_2076 NC_017625.1 2231129 2231356 D hypothetical protein 2231129..2231356 Escherichia coli DH1 12705679 YP_006092022.1 CDS EcDH1_2077 NC_017625.1 2231741 2232073 R KEGG: ent:Ent638_2935 hypothetical protein; hypothetical protein complement(2231741..2232073) Escherichia coli DH1 12705680 YP_006092023.1 CDS EcDH1_2078 NC_017625.1 2232606 2232845 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: ent:Ent638_4262 bifunctional antitoxin/transcriptional repressor RelB; RelB/DinJ family addiction module antitoxin 2232606..2232845 Escherichia coli DH1 12705681 YP_006092024.1 CDS EcDH1_2079 NC_017625.1 2232845 2233132 D TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: sfx:S1669 hypothetical protein; RelE/StbE family addiction module toxin 2232845..2233132 Escherichia coli DH1 12705682 YP_006092025.1 CDS EcDH1_2080 NC_017625.1 2233204 2233359 D PFAM: Hok/gef cell toxic protein; KEGG: sdy:SDY_1432 polypeptide destructive to membrane potential; Hok/gef cell toxic protein 2233204..2233359 Escherichia coli DH1 12705683 YP_006092026.1 CDS EcDH1_2081 NC_017625.1 2233576 2233827 D KEGG: sdy:SDY_1433 hypothetical protein; hypothetical protein 2233576..2233827 Escherichia coli DH1 12705684 YP_006092027.1 CDS EcDH1_2082 NC_017625.1 2233894 2234172 D KEGG: sfl:SF2042 hypothetical protein; hypothetical protein 2233894..2234172 Escherichia coli DH1 12705685 YP_006092028.1 CDS EcDH1_2083 NC_017625.1 2234174 2235223 D PFAM: protein of unknown function DUF1277; SMART: HNH nuclease; KEGG: sfl:SF1546 hypothetical protein; hypothetical protein 2234174..2235223 Escherichia coli DH1 12705686 YP_006092029.1 CDS EcDH1_2084 NC_017625.1 2235237 2235989 D PFAM: antitermination protein; KEGG: sew:SeSA_A4452 antitermination protein; antitermination protein 2235237..2235989 Escherichia coli DH1 12705687 YP_006092030.1 CDS EcDH1_2085 NC_017625.1 2236411 2236623 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sek:SSPA1487 putative cold shock protein; cold-shock protein complement(2236411..2236623) Escherichia coli DH1 12705688 YP_006092031.1 CDS EcDH1_2086 NC_017625.1 2236924 2237139 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ent:Ent638_0166 major cold shock protein; cold-shock protein 2236924..2237139 Escherichia coli DH1 12705689 YP_006092032.1 CDS EcDH1_2087 NC_017625.1 2237741 2237860 R hypothetical protein complement(2237741..2237860) Escherichia coli DH1 12705690 YP_006092033.1 CDS EcDH1_2088 NC_017625.1 2237902 2238108 D PFAM: Lysis S family protein; KEGG: esa:ESA_01624 hypothetical protein; Lysis S family protein 2237902..2238108 Escherichia coli DH1 12705691 YP_006092034.1 CDS EcDH1_2089 NC_017625.1 2238113 2238424 D PFAM: protein of unknown function DUF1327; KEGG: sbc:SbBS512_E1449 hypothetical protein; hypothetical protein 2238113..2238424 Escherichia coli DH1 12705692 YP_006092035.1 CDS EcDH1_2090 NC_017625.1 2238421 2238954 D PFAM: glycoside hydrolase family 24; KEGG: sbc:SbBS512_E1450 phage lysozyme; lysozyme 2238421..2238954 Escherichia coli DH1 12705693 YP_006092036.1 CDS EcDH1_2091 NC_017625.1 2238951 2239448 D KEGG: sew:SeSA_A0687 protein GP55; protein GP55 2238951..2239448 Escherichia coli DH1 12705694 YP_006092037.1 CDS EcDH1_2092 NC_017625.1 2239811 2240023 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: ses:SARI_00934 hypothetical protein; cold-shock protein 2239811..2240023 Escherichia coli DH1 12705695 YP_006092038.1 CDS EcDH1_2094 NC_017625.1 2240369 2240524 D KEGG: kpe:KPK_4952 hypothetical protein; hypothetical protein 2240369..2240524 Escherichia coli DH1 12705697 YP_006092039.1 CDS EcDH1_2095 NC_017625.1 2240696 2240869 D PFAM: GnsAGnsB family protein; KEGG: sbc:SbBS512_E2323 transcriptional regulator, GnsA/GnsB family; GnsAGnsB family protein 2240696..2240869 Escherichia coli DH1 12705698 YP_006092040.1 CDS EcDH1_2096 NC_017625.1 2241021 2241431 R PFAM: protein of unknown function DUF1398; KEGG: ssn:SSON_2432 hypothetical protein; hypothetical protein complement(2241021..2241431) Escherichia coli DH1 12705699 YP_006092041.1 CDS EcDH1_2097 NC_017625.1 2242111 2242680 D PFAM: DNA packaging Nu1; KEGG: ssn:SSON_2431 bacteriophage DNA packaging protein; DNA packaging Nu1 2242111..2242680 Escherichia coli DH1 12705700 YP_006092042.1 CDS EcDH1_2098 NC_017625.1 2242631 2243593 D PFAM: tail fiber repeat containing protein; Tail Collar domain protein; KEGG: ssn:SSON_2410 phage protein-related; Tail Collar domain-containing protein 2242631..2243593 Escherichia coli DH1 12705701 YP_006092043.1 CDS EcDH1_2099 NC_017625.1 2243593 2244168 D PFAM: tail assembly chaperone gp38; KEGG: sbc:SbBS512_E1479 tail fiber assembly protein; tail assembly chaperone gp38 2243593..2244168 Escherichia coli DH1 12705702 YP_006092044.1 CDS EcDH1_2100 NC_017625.1 2244266 2244856 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sbl:Sbal_4419 resolvase domain-containing protein; Resolvase domain-containing protein complement(2244266..2244856) Escherichia coli DH1 12705703 YP_006092045.1 CDS EcDH1_2101 NC_017625.1 2245173 2245439 R KEGG: ent:Ent638_2496 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator complement(2245173..2245439) Escherichia coli DH1 12705704 YP_006092046.1 CDS EcDH1_2102 NC_017625.1 2246193 2247476 D TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sdy:SDY_1582 putative transport protein; metabolite/H+ symporter, major facilitator superfamily (MFS) 2246193..2247476 Escherichia coli DH1 12705705 YP_006092047.1 CDS EcDH1_2103 NC_017625.1 2247565 2249025 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1678 putative oxidoreductase; mannitol dehydrogenase domain-containing protein 2247565..2249025 Escherichia coli DH1 12705706 YP_006092048.1 CDS EcDH1_2104 NC_017625.1 2249060 2249263 R TIGRFAM: selenium-binding protein YdfZ; KEGG: sdy:SDY_1584 hypothetical protein; selenium-binding protein YdfZ complement(2249060..2249263) Escherichia coli DH1 12705707 YP_006092049.1 CDS EcDH1_2105 NC_017625.1 2249440 2250126 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ssn:SSON_1588 hypothetical protein; GntR family transcriptional regulator complement(2249440..2250126) Escherichia coli DH1 12705708 YP_006092050.1 CDS EcDH1_2106 NC_017625.1 2250215 2250961 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbo:SBO_1613 L-allo-threonine dehydrogenase, NAD(P)-binding; short-chain dehydrogenase/reductase SDR complement(2250215..2250961) Escherichia coli DH1 12705709 YP_006092051.1 CDS EcDH1_2107 NC_017625.1 2251098 2253143 D PFAM: peptidase M3A and M3B thimet/oligopeptidase F; KEGG: sbo:SBO_1612 dipeptidyl carboxypeptidase II; peptidyl-dipeptidase Dcp 2251098..2253143 Escherichia coli DH1 12705710 YP_006092052.1 CDS EcDH1_2108 NC_017625.1 2253187 2253705 R PFAM: CinA domain protein; KEGG: sdy:SDY_1588 competence damage-inducible protein A; CinA domain-containing protein complement(2253187..2253705) Escherichia coli DH1 12705711 YP_006092053.1 CDS EcDH1_2109 NC_017625.1 2253981 2254373 D PFAM: conserved hypothetical protein; KEGG: sdy:SDY_1589 hypothetical protein; hypothetical protein 2253981..2254373 Escherichia coli DH1 12705712 YP_006092054.1 CDS EcDH1_2110 NC_017625.1 2254628 2255518 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1593 hypothetical protein; diguanylate cyclase 2254628..2255518 Escherichia coli DH1 12705713 YP_006092055.1 CDS EcDH1_2111 NC_017625.1 2255737 2255832 R KEGG: sed:SeD_A1821 hypothetical protein; hypothetical protein complement(2255737..2255832) Escherichia coli DH1 12705714 YP_006092056.1 CDS EcDH1_2112 NC_017625.1 2255959 2257146 R PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_1593 putative MFS-type transporter YdeE; major facilitator superfamily protein complement(2255959..2257146) Escherichia coli DH1 12705715 YP_006092057.1 CDS EcDH1_2113 NC_017625.1 2257341 2258240 D PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: sfv:SFV_1593 O-acetylserine/cysteine export protein; hypothetical protein 2257341..2258240 Escherichia coli DH1 12705716 YP_006092058.1 CDS EcDH1_2114 NC_017625.1 2258271 2258489 R KEGG: sbo:SBO_1650 hypothetical protein; hypothetical protein complement(2258271..2258489) Escherichia coli DH1 12705717 YP_006092059.1 CDS EcDH1_2115 NC_017625.1 2258521 2258904 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E1674 multiple antibiotic resistance protein MarA; AraC family transcriptional regulator complement(2258521..2258904) Escherichia coli DH1 12705718 YP_006092060.1 CDS EcDH1_2116 NC_017625.1 2258924 2259358 R PFAM: regulatory protein MarR; KEGG: sdy:SDY_1597 DNA-binding transcriptional repressor MarR; MarR family transcriptional regulator complement(2258924..2259358) Escherichia coli DH1 12705719 YP_006092061.1 CDS EcDH1_2117 NC_017625.1 2259570 2260235 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: sdy:SDY_1598 multiple drug resistance protein MarC; multiple antibiotic resistance (MarC)-like protein 2259570..2260235 Escherichia coli DH1 12705720 YP_006092062.1 CDS EcDH1_2118 NC_017625.1 2260260 2261450 R PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_1646 sugar efflux transporter; major facilitator superfamily protein complement(2260260..2261450) Escherichia coli DH1 12705721 YP_006092063.1 CDS EcDH1_2119 NC_017625.1 2261600 2262715 R KEGG: ssn:SSON_1601 hypothetical protein; hypothetical protein complement(2261600..2262715) Escherichia coli DH1 12705722 YP_006092064.1 CDS EcDH1_2120 NC_017625.1 2262793 2263674 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_1633 putative transcriptional regulator LysR-type; LysR family transcriptional regulator complement(2262793..2263674) Escherichia coli DH1 12705723 YP_006092065.1 CDS EcDH1_2121 NC_017625.1 2263775 2265163 D PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E1681 aldehyde dehydrogenase (NAD) family protein; aldehyde dehydrogenase 2263775..2265163 Escherichia coli DH1 12705724 YP_006092066.1 CDS EcDH1_2122 NC_017625.1 2265227 2266153 D PFAM: Glutaminase, core; KEGG: sbc:SbBS512_E1682 glutaminase; Glutaminase 2265227..2266153 Escherichia coli DH1 12705725 YP_006092067.1 CDS EcDH1_2123 NC_017625.1 2266153 2266512 D KEGG: sbc:SbBS512_E1683 hypothetical protein; hypothetical protein 2266153..2266512 Escherichia coli DH1 12705726 YP_006092068.1 CDS EcDH1_2124 NC_017625.1 2266624 2267571 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbo:SBO_1640 hypothetical protein; diguanylate cyclase 2266624..2267571 Escherichia coli DH1 12705727 YP_006092069.1 CDS EcDH1_2125 NC_017625.1 2267798 2269249 D PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: sfx:S1699 altronate oxidoreductase; mannitol dehydrogenase domain-containing protein 2267798..2269249 Escherichia coli DH1 12705728 YP_006092070.1 CDS EcDH1_2126 NC_017625.1 2269456 2270370 D PFAM: protein of unknown function UPF0187; KEGG: sfv:SFV_1577 hypothetical protein; hypothetical protein 2269456..2270370 Escherichia coli DH1 12705729 YP_006092071.1 CDS EcDH1_2127 NC_017625.1 2270374 2271132 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sfx:S1702 trans-aconitate 2-methyltransferase; Trans-aconitate 2-methyltransferase complement(2270374..2271132) Escherichia coli DH1 12705730 YP_006092072.1 CDS EcDH1_2128 NC_017625.1 2271189 2271479 R PFAM: Antibiotic biosynthesis monooxygenase; KEGG: sdy:SDY_1624 autoinducer-2 (AI-2) modifying protein LsrG; antibiotic biosynthesis monooxygenase complement(2271189..2271479) Escherichia coli DH1 12705731 YP_006092073.1 CDS EcDH1_2129 NC_017625.1 2271503 2272378 R PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: stm:STM4078 aldolase; Fructose-bisphosphate aldolase complement(2271503..2272378) Escherichia coli DH1 12705732 YP_006092074.1 CDS EcDH1_2130 NC_017625.1 2272405 2273427 R KEGG: stm:STM4077 putative sugar transport protein; putative sugar transport protein complement(2272405..2273427) Escherichia coli DH1 12705733 YP_006092075.1 CDS EcDH1_2131 NC_017625.1 2273439 2274431 R PFAM: inner-membrane translocator; KEGG: sfv:SFV_1570 putative transport system permease protein; monosaccharide-transporting ATPase complement(2273439..2274431) Escherichia coli DH1 12705734 YP_006092076.1 CDS EcDH1_2132 NC_017625.1 2274431 2275459 R PFAM: inner-membrane translocator; KEGG: sfv:SFV_1569 putative transport system permease protein; monosaccharide-transporting ATPase complement(2274431..2275459) Escherichia coli DH1 12705735 YP_006092077.1 CDS EcDH1_2133 NC_017625.1 2275453 2276988 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfv:SFV_1568 putative ATP-binding component of a transport system; ABC transporter complement(2275453..2276988) Escherichia coli DH1 12705736 YP_006092078.1 CDS EcDH1_2134 NC_017625.1 2277237 2278190 D PFAM: putative sugar-binding domain protein; KEGG: sfv:SFV_1567 putative SorC family transcriptional regulator; DeoR family transcriptional regulator 2277237..2278190 Escherichia coli DH1 12705737 YP_006092079.1 CDS EcDH1_2135 NC_017625.1 2278269 2279861 D PFAM: carbohydrate kinase FGGY; KEGG: spq:SPAB_05045 autoinducer-2 (AI-2) kinase; carbohydrate kinase FGGY 2278269..2279861 Escherichia coli DH1 12705738 YP_006092080.1 CDS EcDH1_2137 NC_017625.1 2285841 2285939 D hypothetical protein 2285841..2285939 Escherichia coli DH1 12705740 YP_006092081.1 CDS EcDH1_2138 NC_017625.1 2286036 2286302 D PFAM: helix-turn-helix domain protein; KEGG: ssn:SSON_1613 DNA-binding transcriptional regulator; XRE family transcriptional regulator 2286036..2286302 Escherichia coli DH1 12705741 YP_006092082.1 CDS EcDH1_2139 NC_017625.1 2286302 2287624 D TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: kpn:KPN_01668 persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator; HipA N-terminal domain-containing protein 2286302..2287624 Escherichia coli DH1 12705742 YP_006092083.1 CDS EcDH1_2141 NC_017625.1 2288477 2289625 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: cko:CKO_03711 hypothetical protein; fimbrial biogenesis outer membrane usher protein 2288477..2289625 Escherichia coli DH1 12705744 YP_006092084.1 CDS EcDH1_2142 NC_017625.1 2289639 2290169 D PFAM: Fimbrial protein; KEGG: kpe:KPK_0813 fimbrial protein FimF; Fimbrial protein 2289639..2290169 Escherichia coli DH1 12705745 YP_006092085.1 CDS EcDH1_2143 NC_017625.1 2290182 2290685 D PFAM: Fimbrial protein; KEGG: sbo:SBO_4369 fimbrial morphology; Fimbrial protein 2290182..2290685 Escherichia coli DH1 12705746 YP_006092086.1 CDS EcDH1_2144 NC_017625.1 2290744 2291658 D PFAM: Fimbrial protein; FimH mannose-binding domain protein; KEGG: ssn:SSON_1621 putative adhesin; FimH mannose-binding domain protein 2290744..2291658 Escherichia coli DH1 12705747 YP_006092087.1 CDS EcDH1_2145 NC_017625.1 2291992 2294271 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sbc:SbBS512_E1763 molybdopterin oxidoreductase, alpha subunit; oxidoreductase alpha (molybdopterin) subunit 2291992..2294271 Escherichia coli DH1 12705748 YP_006092088.1 CDS EcDH1_2146 NC_017625.1 2294519 2294716 D KEGG: sfx:S1655 hypothetical protein; hypothetical protein 2294519..2294716 Escherichia coli DH1 12705749 YP_006092089.1 CDS EcDH1_2147 NC_017625.1 2294791 2295552 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E1762 transcriptional regulator, AraC family; AraC family transcriptional regulator 2294791..2295552 Escherichia coli DH1 12705750 YP_006092090.1 CDS EcDH1_2148 NC_017625.1 2295954 2297636 D PFAM: sulfatase; KEGG: sbo:SBO_1558 putative sulfatase; sulfatase 2295954..2297636 Escherichia coli DH1 12705751 YP_006092091.1 CDS EcDH1_2149 NC_017625.1 2297688 2298845 D PFAM: Radical SAM domain protein; KEGG: sfv:SFV_1723 putative enzyme; radical SAM protein 2297688..2298845 Escherichia coli DH1 12705752 YP_006092092.1 CDS EcDH1_2150 NC_017625.1 2299136 2300821 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_1627 putative ATP-binding component of a transport system; ABC transporter 2299136..2300821 Escherichia coli DH1 12705753 YP_006092093.1 CDS EcDH1_2151 NC_017625.1 2300859 2303231 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_1629 hypothetical protein; TonB-dependent receptor plug 2300859..2303231 Escherichia coli DH1 12705754 YP_006092094.1 CDS EcDH1_2152 NC_017625.1 2303288 2306071 D PFAM: peptidase M16 domain protein; KEGG: sbo:SBO_1562 putative peptidase; peptidase M16 domain-containing protein 2303288..2306071 Escherichia coli DH1 12705755 YP_006092095.1 CDS EcDH1_2153 NC_017625.1 2306433 2307833 D TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: sbo:SBO_1563 glutamate decarboxylase isozyme; glutamate decarboxylase 2306433..2307833 Escherichia coli DH1 12705756 YP_006092096.1 CDS EcDH1_2155 NC_017625.1 2307989 2309524 D TIGRFAM: glutamate/g-aminobutyrate antiporter; PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E1755 glutamate:gamma aminobutyrate antiporter; glutamate/g-aminobutyrate antiporter 2307989..2309524 Escherichia coli DH1 12705758 YP_006092097.1 CDS EcDH1_2156 NC_017625.1 2309655 2310974 D PFAM: protein of unknown function DUF187; KEGG: sfv:SFV_1732 hypothetical protein; hypothetical protein 2309655..2310974 Escherichia coli DH1 12705759 YP_006092098.1 CDS EcDH1_2157 NC_017625.1 2311338 2312720 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1634 hypothetical protein; diguanylate cyclase 2311338..2312720 Escherichia coli DH1 12705760 YP_006092099.1 CDS EcDH1_2158 NC_017625.1 2312745 2315144 D KEGG: ssn:SSON_1635 cAMP phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2312745..2315144 Escherichia coli DH1 12705761 YP_006092100.1 CDS EcDH1_2159 NC_017625.1 2315402 2315983 D PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: ssn:SSON_1636 D-alanyl-D-alanine dipeptidase; peptidase M15D vanX D-ala-D-ala dipeptidase 2315402..2315983 Escherichia coli DH1 12705762 YP_006092101.1 CDS EcDH1_2160 NC_017625.1 2315997 2317547 D PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_1637 putative hemin-binding lipoprotein; family 5 extracellular solute-binding protein 2315997..2317547 Escherichia coli DH1 12705763 YP_006092102.1 CDS EcDH1_2161 NC_017625.1 2317549 2318571 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1571 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein 2317549..2318571 Escherichia coli DH1 12705764 YP_006092103.1 CDS EcDH1_2162 NC_017625.1 2318568 2319464 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1639 ATP-dependent peptide transporter membrane subunit; binding-protein-dependent transport system inner membrane protein 2318568..2319464 Escherichia coli DH1 12705765 YP_006092104.1 CDS EcDH1_2163 NC_017625.1 2319461 2320447 D KEGG: sbc:SbBS512_E1747 ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2319461..2320447 Escherichia coli DH1 12705766 YP_006092105.1 CDS EcDH1_2164 NC_017625.1 2320440 2321366 D KEGG: sbo:SBO_1574 putative ATP-binding component of a transport system; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2320440..2321366 Escherichia coli DH1 12705767 YP_006092106.1 CDS EcDH1_2165 NC_017625.1 2321422 2321853 R PFAM: OsmC family protein; KEGG: sfv:SFV_1739 osmotically inducible protein; OsmC family protein complement(2321422..2321853) Escherichia coli DH1 12705768 YP_006092107.1 CDS EcDH1_2166 NC_017625.1 2322198 2322413 D KEGG: sbc:SbBS512_E1744 protein bdm; protein bdm 2322198..2322413 Escherichia coli DH1 12705769 YP_006092108.1 CDS EcDH1_2167 NC_017625.1 2322515 2322652 D PFAM: 30S ribosomal subunit S22; KEGG: sbc:SbBS512_E1743 30S ribosomal protein, S22 family; 30S ribosomal subunit S22 2322515..2322652 Escherichia coli DH1 12705770 YP_006092109.1 CDS EcDH1_2168 NC_017625.1 2322809 2324506 D PFAM: malic protein domain protein; malic protein NAD-binding; KEGG: sfv:SFV_1742 malate dehydrogenase; Malate dehydrogenase (oxaloacetate-decarboxylating) 2322809..2324506 Escherichia coli DH1 12705771 YP_006092110.1 CDS EcDH1_2169 NC_017625.1 2324640 2325650 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfx:S1880 alcohol dehydrogenase; alcohol dehydrogenase 2324640..2325650 Escherichia coli DH1 12705772 YP_006092111.1 CDS EcDH1_2170 NC_017625.1 2325796 2326080 D TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E1740 addiction module antidote protein, HigA family; plasmid maintenance system antidote protein 2325796..2326080 Escherichia coli DH1 12705773 YP_006092112.1 CDS EcDH1_2171 NC_017625.1 2326487 2327140 R TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: sbc:SbBS512_E1739 formate dehydrogenase, gamma subunit; formate dehydrogenase subunit gamma complement(2326487..2327140) Escherichia coli DH1 12705774 YP_006092113.1 CDS EcDH1_2172 NC_017625.1 2327133 2328017 R TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbo:SBO_1582 formate dehydrogenase N, nitrate-inducible, iron-sulfur beta subunit; formate dehydrogenase subunit beta complement(2327133..2328017) Escherichia coli DH1 12705775 YP_006092114.1 CDS EcDH1_2173 NC_017625.1 2328030 2330441 R KEGG: ssn:SSON_1650 formate dehydrogenase-N, nitrate-inducible, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; formate dehydrogenase subunit alpha complement(2328030..2330441) Escherichia coli DH1 12705776 YP_006092115.1 CDS EcDH1_2174 NC_017625.1 2330490 2331077 R PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: sbo:SBO_1583 formate dehydrogenase N, nitrate-inducible, alpha subunit; molybdopterin oxidoreductase Fe4S4 region complement(2330490..2331077) Escherichia coli DH1 12705777 YP_006092116.1 CDS EcDH1_2175 NC_017625.1 2331309 2332190 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbo:SBO_1584 hypothetical protein; hypothetical protein 2331309..2332190 Escherichia coli DH1 12705778 YP_006092117.1 CDS EcDH1_2176 NC_017625.1 2332450 2332740 D KEGG: sbo:SBO_1585 putative outer membrane porin protein; putative outer membrane porin protein 2332450..2332740 Escherichia coli DH1 12705779 YP_006092118.1 CDS EcDH1_2178 NC_017625.1 2334418 2335806 D TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_1756 nitrite extrusion protein 2; nitrite transporter 2334418..2335806 Escherichia coli DH1 12705781 YP_006092119.1 CDS EcDH1_2179 NC_017625.1 2335888 2339628 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sfv:SFV_1757 cryptic nitrate reductase 2, alpha subunit; nitrate reductase subunit alpha 2335888..2339628 Escherichia coli DH1 12705782 YP_006092120.1 CDS EcDH1_2180 NC_017625.1 2339625 2341169 D TIGRFAM: nitrate reductase, beta subunit; KEGG: ssn:SSON_1658 cryptic nitrate reductase 2, beta subunit; nitrate reductase subunit beta 2339625..2341169 Escherichia coli DH1 12705783 YP_006092121.1 CDS EcDH1_2181 NC_017625.1 2341169 2341864 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: ssn:SSON_1659 cryptic nitrate reductase 2, delta subunit, assembly function; nitrate reductase molybdenum cofactor assembly chaperone 2341169..2341864 Escherichia coli DH1 12705784 YP_006092122.1 CDS EcDH1_2182 NC_017625.1 2341861 2342541 D KEGG: sdy:SDY_1653 cryptic nitrate reductase 2, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma 2341861..2342541 Escherichia coli DH1 12705785 YP_006092123.1 CDS EcDH1_2183 NC_017625.1 2342620 2343513 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: ssn:SSON_1661 hypothetical protein; phenazine biosynthesis protein PhzF family protein 2342620..2343513 Escherichia coli DH1 12705786 YP_006092124.1 CDS EcDH1_2184 NC_017625.1 2343609 2344454 R PFAM: N-acetyltransferase; KEGG: ssn:SSON_1662 putative N-hydroxyarylamine O-acetyltransferase; N-hydroxyarylamine O-acetyltransferase complement(2343609..2344454) Escherichia coli DH1 12705787 YP_006092125.1 CDS EcDH1_2185 NC_017625.1 2344627 2345196 D PFAM: flavin reductase domain protein FMN-binding; KEGG: ssn:SSON_1663 hypothetical protein; flavin reductase domain-containing FMN-binding protein 2344627..2345196 Escherichia coli DH1 12705788 YP_006092126.1 CDS EcDH1_2186 NC_017625.1 2345193 2345426 R PFAM: 4-oxalocrotonate tautomerase; KEGG: ssn:SSON_1664 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase complement(2345193..2345426) Escherichia coli DH1 12705789 YP_006092127.1 CDS EcDH1_2187 NC_017625.1 2345526 2346662 R PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein complement(2345526..2346662) Escherichia coli DH1 12705790 YP_006092128.1 CDS EcDH1_2189 NC_017625.1 2348074 2348556 R dCTP deaminase complement(2348074..2348556) Escherichia coli DH1 12705792 YP_006092129.1 CDS EcDH1_2190 NC_017625.1 2348540 2350588 R PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_3712 YD repeat protein; RHS protein complement(2348540..2350588) Escherichia coli DH1 12705793 YP_006092130.1 CDS EcDH1_2191 NC_017625.1 2351326 2351538 R KEGG: sdy:SDY_1950 hypothetical protein; hypothetical protein complement(2351326..2351538) Escherichia coli DH1 12705794 YP_006092131.1 CDS EcDH1_2192 NC_017625.1 2351614 2352231 R KEGG: sbo:SBO_1593 putative transferase; putative transferase complement(2351614..2352231) Escherichia coli DH1 12705795 YP_006092132.1 CDS EcDH1_2193 NC_017625.1 2352498 2353997 D PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E1725 L-asparagine permease; amino acid permease 2352498..2353997 Escherichia coli DH1 12705796 YP_006092133.1 CDS EcDH1_2194 NC_017625.1 2354110 2355171 R KEGG: sbo:SBO_1595 putative receptor; putative receptor complement(2354110..2355171) Escherichia coli DH1 12705797 YP_006092134.1 CDS EcDH1_2195 NC_017625.1 2355413 2357515 D PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sbo:SBO_1596 putative outer membrane receptor for iron transport; TonB-dependent receptor 2355413..2357515 Escherichia coli DH1 12705798 YP_006092135.1 CDS EcDH1_2196 NC_017625.1 2357551 2358216 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfv:SFV_1761 putative DNA-binding transcriptional regulator; GntR family transcriptional regulator complement(2357551..2358216) Escherichia coli DH1 12705799 YP_006092136.1 CDS EcDH1_2197 NC_017625.1 2358414 2359451 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sdy:SDY_1724 putative oxidoreductase; alcohol dehydrogenase complement(2358414..2359451) Escherichia coli DH1 12705800 YP_006092137.1 CDS EcDH1_2198 NC_017625.1 2359632 2360150 D PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_1725 putative resistance protein; N-acetyltransferase GCN5 2359632..2360150 Escherichia coli DH1 12705801 YP_006092138.1 CDS EcDH1_2199 NC_017625.1 2360147 2360596 D PFAM: protein of unknown function DUF606; KEGG: sbo:SBO_1601 hypothetical protein; hypothetical protein 2360147..2360596 Escherichia coli DH1 12705802 YP_006092139.1 CDS EcDH1_2200 NC_017625.1 2360597 2360830 R KEGG: sbc:SbBS512_E1716 hypothetical protein; hypothetical protein complement(2360597..2360830) Escherichia coli DH1 12705803 YP_006092140.1 CDS EcDH1_2201 NC_017625.1 2360916 2361089 R KEGG: sdy:SDY_1729 hypothetical protein; hypothetical protein complement(2360916..2361089) Escherichia coli DH1 12705804 YP_006092141.1 CDS EcDH1_2202 NC_017625.1 2361476 2362900 R TIGRFAM: 1-pyrroline dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ssn:SSON_1693 putative aldehyde dehydrogenase; 1-pyrroline dehydrogenase complement(2361476..2362900) Escherichia coli DH1 12705805 YP_006092142.1 CDS EcDH1_2203 NC_017625.1 2362922 2363716 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_1771 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(2362922..2363716) Escherichia coli DH1 12705806 YP_006092143.1 CDS EcDH1_2204 NC_017625.1 2363706 2364647 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ent:Ent638_2126 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2363706..2364647) Escherichia coli DH1 12705807 YP_006092144.1 CDS EcDH1_2205 NC_017625.1 2364648 2365661 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_1696 putative ATP-binding component of a transport system; ABC transporter complement(2364648..2365661) Escherichia coli DH1 12705808 YP_006092145.1 CDS EcDH1_2206 NC_017625.1 2365679 2366824 R PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1697 putative transport protein; extracellular solute-binding protein complement(2365679..2366824) Escherichia coli DH1 12705809 YP_006092146.1 CDS EcDH1_2207 NC_017625.1 2367069 2368475 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: ssn:SSON_1698 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system; DeoR family transcriptional regulator complement(2367069..2368475) Escherichia coli DH1 12705810 YP_006092147.1 CDS EcDH1_2208 NC_017625.1 2368554 2368991 R PFAM: helix-turn-helix domain protein; protein of unknown function UPF0150; KEGG: sdy:SDY_1736 hypothetical protein; XRE family transcriptional regulator complement(2368554..2368991) Escherichia coli DH1 12705811 YP_006092148.1 CDS EcDH1_2209 NC_017625.1 2369016 2369192 R PFAM: YcfA family protein; KEGG: cko:CKO_01475 hypothetical protein; hypothetical protein complement(2369016..2369192) Escherichia coli DH1 12705812 YP_006092149.1 CDS EcDH1_2210 NC_017625.1 2369414 2369644 D KEGG: ssn:SSON_1702 hypothetical protein; hypothetical protein 2369414..2369644 Escherichia coli DH1 12705813 YP_006092150.1 CDS EcDH1_2211 NC_017625.1 2369736 2371697 R PFAM: peptidase U32; KEGG: ssn:SSON_1703 putative collagenase; peptidase U32 complement(2369736..2371697) Escherichia coli DH1 12705814 YP_006092151.1 CDS EcDH1_2212 NC_017625.1 2371770 2372306 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: ssn:SSON_1704 hypothetical protein; XRE family transcriptional regulator complement(2371770..2372306) Escherichia coli DH1 12705815 YP_006092152.1 CDS EcDH1_2213 NC_017625.1 2372398 2373573 D TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: cko:CKO_01471 hypothetical protein; benzoate transporter 2372398..2373573 Escherichia coli DH1 12705816 YP_006092153.1 CDS EcDH1_2214 NC_017625.1 2373613 2374761 R KEGG: ssn:SSON_1709 putative virulence protein; TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; transposase, IS605 OrfB family complement(2373613..2374761) Escherichia coli DH1 12705817 YP_006092154.1 CDS EcDH1_2216 NC_017625.1 2375353 2376021 R KEGG: sfv:SFV_1775 hypothetical protein; hypothetical protein complement(2375353..2376021) Escherichia coli DH1 12705819 YP_006092155.1 CDS EcDH1_2217 NC_017625.1 2376323 2376916 R TIGRFAM: tellurite resistance protein TehB; PFAM: Methyltransferase type 11; Methyltransferase type 12; Tellurite resistance methyltransferase, TehB, core; KEGG: ssn:SSON_1712 tellurite resistance protein TehB; tellurite resistance protein TehB complement(2376323..2376916) Escherichia coli DH1 12705820 YP_006092156.1 CDS EcDH1_2218 NC_017625.1 2376913 2377905 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: sfv:SFV_1777 potassium-tellurite ethidium and proflavin transporter; C4-dicarboxylate transporter/malic acid transport protein complement(2376913..2377905) Escherichia coli DH1 12705821 YP_006092157.1 CDS EcDH1_2219 NC_017625.1 2378029 2379009 D KEGG: sfv:SFV_1778 hypothetical protein; hypothetical protein 2378029..2379009 Escherichia coli DH1 12705822 YP_006092158.1 CDS EcDH1_2220 NC_017625.1 2379001 2379540 R PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E1652 ribosomal-protein-serine acetyltransferase; N-acetyltransferase GCN5 complement(2379001..2379540) Escherichia coli DH1 12705823 YP_006092159.1 CDS EcDH1_2221 NC_017625.1 2379603 2379827 R PFAM: protein of unknown function DUF465; KEGG: sfv:SFV_1780 hypothetical protein; hypothetical protein complement(2379603..2379827) Escherichia coli DH1 12705824 YP_006092160.1 CDS EcDH1_2222 NC_017625.1 2379967 2381586 R PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: sbo:SBO_1663 glucan biosynthesis protein D; periplasmic glucan biosynthesis protein MdoG complement(2379967..2381586) Escherichia coli DH1 12705825 YP_006092161.1 CDS EcDH1_2223 NC_017625.1 2381847 2383190 R PFAM: protein of unknown function DUF1338; KEGG: ssn:SSON_1719 hypothetical protein; hypothetical protein complement(2381847..2383190) Escherichia coli DH1 12705826 YP_006092162.1 CDS EcDH1_2224 NC_017625.1 2383407 2384330 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_1720 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2383407..2384330 Escherichia coli DH1 12705827 YP_006092163.1 CDS EcDH1_2225 NC_017625.1 2384368 2386008 R PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sfx:S1485 methyl-accepting chemotaxis protein III, ribose sensor receptor; methyl-accepting chemotaxis sensory transducer complement(2384368..2386008) Escherichia coli DH1 12705828 YP_006092164.1 CDS EcDH1_2226 NC_017625.1 2386349 2386516 D KEGG: ssn:SSON_1722 hypothetical protein; hypothetical protein 2386349..2386516 Escherichia coli DH1 12705829 YP_006092165.1 CDS EcDH1_2227 NC_017625.1 2386628 2386801 R KEGG: sbc:SbBS512_E1643 hypothetical protein; hypothetical protein complement(2386628..2386801) Escherichia coli DH1 12705830 YP_006092166.1 CDS EcDH1_2228 NC_017625.1 2387046 2387576 R PFAM: cytochrome B561; KEGG: sbc:SbBS512_E1642 nickel-dependent hydrogenase, b-type cytochrome subunit; cytochrome B561 complement(2387046..2387576) Escherichia coli DH1 12705831 YP_006092167.1 CDS EcDH1_2230 NC_017625.1 2388807 2390246 R PFAM: Aldehyde Dehydrogenase; KEGG: sbc:SbBS512_E1635 aldehyde dehydrogenase A; aldehyde dehydrogenase complement(2388807..2390246) Escherichia coli DH1 12705833 YP_006092168.1 CDS EcDH1_2231 NC_017625.1 2390443 2391243 R PFAM: protein of unknown function DUF218; KEGG: sbo:SBO_1673 hypothetical protein; hypothetical protein complement(2390443..2391243) Escherichia coli DH1 12705834 YP_006092169.1 CDS EcDH1_2232 NC_017625.1 2391515 2395417 R KEGG: sbc:SbBS512_E1633 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases; ATP-dependent helicase HrpA complement(2391515..2395417) Escherichia coli DH1 12705835 YP_006092170.1 CDS EcDH1_2233 NC_017625.1 2395618 2396223 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbc:SbBS512_E1632 FMN-dependent NADH-azoreductase; NAD(P)H dehydrogenase (quinone) 2395618..2396223 Escherichia coli DH1 12705836 YP_006092171.1 CDS EcDH1_2234 NC_017625.1 2396277 2397593 R PFAM: phosphoesterase PA-phosphatase related; Dual specificity protein phosphatase; SMART: Protein-tyrosine phosphatase, catalytic; KEGG: sbc:SbBS512_E1631 PAP2 family protein; putative dual specificity phosphatase complement(2396277..2397593) Escherichia coli DH1 12705837 YP_006092172.1 CDS EcDH1_2235 NC_017625.1 2397583 2399340 R KEGG: sdy:SDY_1779 hypothetical protein; hypothetical protein complement(2397583..2399340) Escherichia coli DH1 12705838 YP_006092173.1 CDS EcDH1_2236 NC_017625.1 2399356 2400252 R PFAM: phosphatidate cytidylyltransferase; KEGG: sfx:S1465 putative phosphatidate cytidiltransferase; phosphatidate cytidylyltransferase complement(2399356..2400252) Escherichia coli DH1 12705839 YP_006092174.1 CDS EcDH1_2237 NC_017625.1 2400252 2400857 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sbc:SbBS512_E1623 CDP-alcohol phosphatidyltransferase family protein; CDP-alcohol phosphatidyltransferase complement(2400252..2400857) Escherichia coli DH1 12705840 YP_006092175.1 CDS EcDH1_2238 NC_017625.1 2401028 2403334 R KEGG: sfv:SFV_1802 hypothetical protein; hypothetical protein complement(2401028..2403334) Escherichia coli DH1 12705841 YP_006092176.1 CDS EcDH1_2239 NC_017625.1 2403397 2404257 R PFAM: aldo/keto reductase; KEGG: cko:CKO_01438 putative oxidoreductase; aldo/keto reductase complement(2403397..2404257) Escherichia coli DH1 12705842 YP_006092177.1 CDS EcDH1_2240 NC_017625.1 2404465 2407788 R PFAM: Autotransporter beta- domain protein; KEGG: sek:SSPA3121a putative surface-exposed virulence protein; autotransporter beta-domain-containing protein complement(2404465..2407788) Escherichia coli DH1 12705843 YP_006092178.1 CDS EcDH1_2241 NC_017625.1 2407969 2409120 R PFAM: Integrase catalytic region; KEGG: bac:BamMC406_6641 integrase catalytic region; integrase catalytic subunit complement(2407969..2409120) Escherichia coli DH1 12705844 YP_006092179.1 CDS EcDH1_2242 NC_017625.1 2409329 2409694 D PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein 2409329..2409694 Escherichia coli DH1 12705845 YP_006092180.1 CDS EcDH1_2243 NC_017625.1 2409652 2410557 D PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit 2409652..2410557 Escherichia coli DH1 12705846 YP_006092181.1 CDS EcDH1_2244 NC_017625.1 2410528 2413086 R KEGG: cko:CKO_04793 hypothetical protein; hypothetical protein complement(2410528..2413086) Escherichia coli DH1 12705847 YP_006092182.1 CDS EcDH1_2245 NC_017625.1 2413417 2414007 R TIGRFAM: phenylacetic acid degradation protein PaaY; KEGG: kpe:KPK_2988 phenylacetic acid degradation protein PaaY; phenylacetic acid degradation protein PaaY complement(2413417..2414007) Escherichia coli DH1 12705848 YP_006092183.1 CDS EcDH1_2246 NC_017625.1 2413989 2414939 R TIGRFAM: phenylacetic acid degradation operon negative regulatory protein PaaX; PFAM: PaaX domain protein; PaaX domain protein domain; KEGG: kpn:KPN_01480 transcriptional repressor for phenylacetic acid degradation; PaaX family transcriptional regulator complement(2413989..2414939) Escherichia coli DH1 12705849 YP_006092184.1 CDS EcDH1_2247 NC_017625.1 2415040 2416353 R TIGRFAM: phenylacetate-CoA ligase; KEGG: kpn:KPN_01479 phenylacetate-CoA ligase; phenylacetate-CoA ligase complement(2415040..2416353) Escherichia coli DH1 12705850 YP_006092185.1 CDS EcDH1_2248 NC_017625.1 2416380 2417585 R KEGG: kpn:KPN_01478 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase complement(2416380..2417585) Escherichia coli DH1 12705851 YP_006092186.1 CDS EcDH1_2249 NC_017625.1 2417585 2418007 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: kpe:KPK_2992 phenylacetic acid degradation protein PaaI; phenylacetic acid degradation protein PaaD complement(2417585..2418007) Escherichia coli DH1 12705852 YP_006092187.1 CDS EcDH1_2250 NC_017625.1 2417997 2419424 R KEGG: kpn:KPN_01476 3-hydroxybutyryl-CoA dehydrogenase; TIGRFAM: 3-hydroxyacyl-CoA dehydrogenase PaaC; PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase complement(2417997..2419424) Escherichia coli DH1 12705853 YP_006092188.1 CDS EcDH1_2251 NC_017625.1 2419426 2420214 R TIGRFAM: phenylacetate degradation, enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: kpe:KPK_2994 enoyl-CoA hydratase PaaG; phenylacetate degradation, enoyl-CoA hydratase paaB complement(2419426..2420214) Escherichia coli DH1 12705854 YP_006092189.1 CDS EcDH1_2252 NC_017625.1 2420214 2420981 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: kpn:KPN_01474 probable enoyl-CoA hydratase; Enoyl-CoA hydratase/isomerase complement(2420214..2420981) Escherichia coli DH1 12705855 YP_006092190.1 CDS EcDH1_2253 NC_017625.1 2420978 2422048 R TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: kpe:KPK_2996 phenylacetate-CoA oxygenase, NAD(P)H oxidoreductase component PaaE; phenylacetate-CoA oxygenase/reductase subunit PaaK complement(2420978..2422048) Escherichia coli DH1 12705856 YP_006092191.1 CDS EcDH1_2254 NC_017625.1 2422056 2422553 R TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: kpn:KPN_01472 phenylacetic acid degradation protein; phenylacetate-CoA oxygenase subunit PaaJ complement(2422056..2422553) Escherichia coli DH1 12705857 YP_006092192.1 CDS EcDH1_2255 NC_017625.1 2422568 2423314 R TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: kpn:KPN_01471 phenylacetic acid degradation protein; phenylacetate-CoA oxygenase subunit PaaI complement(2422568..2423314) Escherichia coli DH1 12705858 YP_006092193.1 CDS EcDH1_2256 NC_017625.1 2423323 2423610 R TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: kpe:KPK_2999 phenylacetate-CoA oxygenase, effector protein; phenylacetate-CoA oxygenase subunit PaaH complement(2423323..2423610) Escherichia coli DH1 12705859 YP_006092194.1 CDS EcDH1_2258 NC_017625.1 2424836 2426881 D TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: MaoC domain protein dehydratase; Aldehyde Dehydrogenase; KEGG: kpn:KPN_01468 phenylacetic acid degradation protein; putative aldehyde dehydrogenase; phenylacetic acid degradation protein paaN 2424836..2426881 Escherichia coli DH1 12705861 YP_006092195.1 CDS EcDH1_2259 NC_017625.1 2427129 2429402 D PFAM: copper amine oxidase domain protein; Copper amine oxidase ; Copper amine oxidase N2-terminal; Copper amine oxidase N3-terminal; KEGG: kpe:KPK_3002 copper amine oxidase; Amine oxidase (copper-containing) 2427129..2429402 Escherichia coli DH1 12705862 YP_006092196.1 CDS EcDH1_2260 NC_017625.1 2429460 2430959 R PFAM: Aldehyde Dehydrogenase; KEGG: kpn:KPN_01455 phenylacetaldehyde dehydrogenase; phenylacetaldehyde dehydrogenase complement(2429460..2430959) Escherichia coli DH1 12705863 YP_006092197.1 CDS EcDH1_2261 NC_017625.1 2431195 2432100 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: kpe:KPK_3018 transcriptional activator FeaR; AraC family transcriptional regulator 2431195..2432100 Escherichia coli DH1 12705864 YP_006092198.1 CDS EcDH1_2262 NC_017625.1 2432272 2432598 R PFAM: conserved hypothetical protein; KEGG: sbo:SBO_1683 hypothetical protein; hypothetical protein complement(2432272..2432598) Escherichia coli DH1 12705865 YP_006092199.1 CDS EcDH1_2263 NC_017625.1 2432606 2432791 R KEGG: ssn:SSON_1742 hypothetical protein; hypothetical protein complement(2432606..2432791) Escherichia coli DH1 12705866 YP_006092200.1 CDS EcDH1_2264 NC_017625.1 2432788 2435427 R KEGG: sbo:SBO_1685 hypothetical protein; hypothetical protein complement(2432788..2435427) Escherichia coli DH1 12705867 YP_006092201.1 CDS EcDH1_2265 NC_017625.1 2435635 2436624 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sbc:SbBS512_E1618 D-lactate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein 2435635..2436624 Escherichia coli DH1 12705868 YP_006092202.1 CDS EcDH1_2266 NC_017625.1 2436735 2437157 D PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: sbc:SbBS512_E1616 heat shock protein HslJ; hypothetical protein 2436735..2437157 Escherichia coli DH1 12705869 YP_006092203.1 CDS EcDH1_2267 NC_017625.1 2437154 2437420 R KEGG: sdy:SDY_1462 hypothetical protein; hypothetical protein complement(2437154..2437420) Escherichia coli DH1 12705870 YP_006092204.1 CDS EcDH1_2268 NC_017625.1 2437694 2441218 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: sbo:SBO_1688 putative oxidoreductase, Fe-S subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2437694..2441218 Escherichia coli DH1 12705871 YP_006092205.1 CDS EcDH1_2269 NC_017625.1 2441585 2442718 D PFAM: porin Gram-negative type; KEGG: sbc:SbBS512_E1614 outer membrane protein N; porin 2441585..2442718 Escherichia coli DH1 12705872 YP_006092206.1 CDS EcDH1_2270 NC_017625.1 2442859 2443293 D PFAM: UspA domain protein; KEGG: sdy:SDY_1458 putative filament protein; UspA domain-containing protein 2442859..2443293 Escherichia coli DH1 12705873 YP_006092207.1 CDS EcDH1_2271 NC_017625.1 2444254 2444487 D KEGG: ent:Ent638_2496 DNA-binding transcriptional regulator; DNA-binding transcriptional regulator 2444254..2444487 Escherichia coli DH1 12705874 YP_006092208.1 CDS EcDH1_2272 NC_017625.1 2444804 2445394 D PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: sbl:Sbal_4419 resolvase domain-containing protein; Resolvase domain-containing protein 2444804..2445394 Escherichia coli DH1 12705875 YP_006092209.1 CDS EcDH1_2273 NC_017625.1 2445492 2446067 R PFAM: tail assembly chaperone gp38; KEGG: sbc:SbBS512_E1479 tail fiber assembly protein; tail assembly chaperone gp38 complement(2445492..2446067) Escherichia coli DH1 12705876 YP_006092210.1 CDS EcDH1_2274 NC_017625.1 2446067 2449429 R PFAM: tail fiber repeat containing protein; tail fiber repeat 2 protein; Tail Collar domain protein; Prophage tail fibre domain protein; KEGG: ssn:SSON_2410 phage protein-related; prophage tail fiber protein complement(2446067..2449429) Escherichia coli DH1 12705877 YP_006092211.1 CDS EcDH1_2276 NC_017625.1 2449752 2450732 D PFAM: transposase IS4 family protein; KEGG: seh:SeHA_C4726 IS5 transposase; transposase IS4 family protein 2449752..2450732 Escherichia coli DH1 12705879 YP_006092212.1 CDS EcDH1_2277 NC_017625.1 2450996 2452024 R KEGG: kpn:KPN_01428 putative phage tail protein; putative phage tail protein complement(2450996..2452024) Escherichia coli DH1 12705880 YP_006092213.1 CDS EcDH1_2278 NC_017625.1 2452498 2452857 R KEGG: cko:CKO_01855 hypothetical protein; hypothetical protein complement(2452498..2452857) Escherichia coli DH1 12705881 YP_006092214.1 CDS EcDH1_2279 NC_017625.1 2452838 2453101 R PFAM: ParB domain protein nuclease; KEGG: ypi:YpsIP31758_2231 ParB family protein; ParB domain-containing protein nuclease complement(2452838..2453101) Escherichia coli DH1 12705882 YP_006092215.1 CDS EcDH1_2280 NC_017625.1 2453239 2454663 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: esa:ESA_pESA3p05484 hypothetical protein; TrkH family potassium uptake protein complement(2453239..2454663) Escherichia coli DH1 12705883 YP_006092216.1 CDS EcDH1_2283 NC_017625.1 2455749 2456495 R PFAM: IstB domain protein ATP-binding protein; KEGG: sty:STY2062 putative replication protein; IstB domain-containing protein ATP-binding protein complement(2455749..2456495) Escherichia coli DH1 12705886 YP_006092217.1 CDS EcDH1_2284 NC_017625.1 2456502 2457359 R PFAM: protein of unknown function DUF1376; KEGG: spq:SPAB_02188 hypothetical protein; hypothetical protein complement(2456502..2457359) Escherichia coli DH1 12705887 YP_006092218.1 CDS EcDH1_2285 NC_017625.1 2457372 2457794 R PFAM: protein of unknown function DUF1019; KEGG: sbc:SbBS512_E0692 hypothetical protein; hypothetical protein complement(2457372..2457794) Escherichia coli DH1 12705888 YP_006092219.1 CDS EcDH1_2286 NC_017625.1 2457817 2458113 R KEGG: xfa:XF0501 hypothetical protein; hypothetical protein complement(2457817..2458113) Escherichia coli DH1 12705889 YP_006092220.1 CDS EcDH1_2287 NC_017625.1 2458237 2458713 D KEGG: pmr:PMI0903 prophage repressor; prophage repressor 2458237..2458713 Escherichia coli DH1 12705890 YP_006092221.1 CDS EcDH1_2288 NC_017625.1 2459022 2459156 D hypothetical protein 2459022..2459156 Escherichia coli DH1 12705891 YP_006092222.1 CDS EcDH1_2289 NC_017625.1 2459167 2459322 D PFAM: protein of unknown function DUF1391; KEGG: sbc:SbBS512_E0694 hypothetical protein; hypothetical protein 2459167..2459322 Escherichia coli DH1 12705892 YP_006092223.1 CDS EcDH1_2290 NC_017625.1 2459319 2459930 R KEGG: set:SEN1382 putative phage membrane protein; hypothetical protein complement(2459319..2459930) Escherichia coli DH1 12705893 YP_006092224.1 CDS EcDH1_2291 NC_017625.1 2460249 2460470 D KEGG: sfl:SF1377 FtsZ inhibitor protein; FtsZ inhibitor protein 2460249..2460470 Escherichia coli DH1 12705894 YP_006092225.1 CDS EcDH1_2292 NC_017625.1 2460470 2460640 D KEGG: sty:STY2071 putative bacteriophage protein; putative bacteriophage protein 2460470..2460640 Escherichia coli DH1 12705895 YP_006092226.1 CDS EcDH1_2293 NC_017625.1 2460715 2460990 D KEGG: sfx:S1954 hypothetical protein; hypothetical protein 2460715..2460990 Escherichia coli DH1 12705896 YP_006092227.1 CDS EcDH1_2294 NC_017625.1 2461092 2463692 D PFAM: exodeoxyribonuclease VIII; KEGG: sty:STY2073 exonuclease VIII; exodeoxyribonuclease VIII 2461092..2463692 Escherichia coli DH1 12705897 YP_006092228.1 CDS EcDH1_2295 NC_017625.1 2463685 2464494 D PFAM: RecT protein; KEGG: spq:SPAB_02270 recombination and repair protein RecT; RecT protein 2463685..2464494 Escherichia coli DH1 12705898 YP_006092229.1 CDS EcDH1_2296 NC_017625.1 2464738 2464947 D PFAM: protein of unknown function DUF1187; KEGG: sty:STY2075 hypothetical protein; hypothetical protein 2464738..2464947 Escherichia coli DH1 12705899 YP_006092230.1 CDS EcDH1_2297 NC_017625.1 2465026 2465241 D PFAM: protein of unknown function DUF1233 excisionase putative; KEGG: sfl:SF1369 hypothetical protein; hypothetical protein 2465026..2465241 Escherichia coli DH1 12705900 YP_006092231.1 CDS EcDH1_2298 NC_017625.1 2465243 2466478 D PFAM: integrase family protein; KEGG: sbo:SBO_1716 putative transposase; integrase family protein 2465243..2466478 Escherichia coli DH1 12705901 YP_006092232.1 CDS EcDH1_2299 NC_017625.1 2466530 2467465 D PFAM: PP-loop domain protein; KEGG: ssn:SSON_1787 C32 tRNA thiolase; PP-loop domain-containing protein 2466530..2467465 Escherichia coli DH1 12705902 YP_006092233.1 CDS EcDH1_2300 NC_017625.1 2467594 2468967 R PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbo:SBO_1718 ATP-dependent RNA helicase DbpA; DEAD/DEAH box helicase complement(2467594..2468967) Escherichia coli DH1 12705903 YP_006092234.1 CDS EcDH1_2301 NC_017625.1 2468997 2469170 R KEGG: esa:ESA_01673 hypothetical protein; hypothetical protein complement(2468997..2469170) Escherichia coli DH1 12705904 YP_006092235.1 CDS EcDH1_2302 NC_017625.1 2469445 2470428 R PFAM: Mg2 transporter protein CorA family protein; KEGG: sdy:SDY_1424 zinc transporter; Mg2 transporter protein CorA family protein complement(2469445..2470428) Escherichia coli DH1 12705905 YP_006092236.1 CDS EcDH1_2303 NC_017625.1 2470683 2471915 D KEGG: sbo:SBO_1720 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 2470683..2471915 Escherichia coli DH1 12705906 YP_006092237.1 CDS EcDH1_2304 NC_017625.1 2471936 2472499 R PFAM: Smr protein/MutS2; KEGG: ssn:SSON_1791 hypothetical protein; Smr protein/MutS2 complement(2471936..2472499) Escherichia coli DH1 12705907 YP_006092238.1 CDS EcDH1_2305 NC_017625.1 2472829 2473737 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_1792 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator complement(2472829..2473737) Escherichia coli DH1 12705908 YP_006092239.1 CDS EcDH1_2306 NC_017625.1 2473913 2475223 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ssn:SSON_1793 putative aminohydrolase; amidohydrolase 2473913..2475223 Escherichia coli DH1 12705909 YP_006092240.1 CDS EcDH1_2307 NC_017625.1 2475223 2476587 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ssn:SSON_1794 hypothetical protein; amidohydrolase 2475223..2476587 Escherichia coli DH1 12705910 YP_006092241.1 CDS EcDH1_2308 NC_017625.1 2476705 2478231 D TIGRFAM: AbgT transporter family; PFAM: AbgT putative transporter; KEGG: sbo:SBO_1725 putative aminobenzoyl-glutamate transporter; AbgT transporter family 2476705..2478231 Escherichia coli DH1 12705911 YP_006092242.1 CDS EcDH1_2309 NC_017625.1 2478242 2478757 D KEGG: sfv:SFV_1824 O-6-alkylguanine-DNA:cysteine-protein methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; methylated-DNA--protein-cysteine methyltransferase 2478242..2478757 Escherichia coli DH1 12705912 YP_006092243.1 CDS EcDH1_2310 NC_017625.1 2479035 2480015 R PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein complement(2479035..2480015) Escherichia coli DH1 12705913 YP_006092244.1 CDS EcDH1_2311 NC_017625.1 2480151 2480903 D PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sbc:SbBS512_E1575 fumarate and nitrate reduction regulatory protein; CarD family transcriptional regulator 2480151..2480903 Escherichia coli DH1 12705914 YP_006092245.1 CDS EcDH1_2312 NC_017625.1 2481055 2482005 D PFAM: UspA domain protein; KEGG: ssn:SSON_1800 universal stress protein UspE; UspA domain-containing protein 2481055..2482005 Escherichia coli DH1 12705915 YP_006092246.1 CDS EcDH1_2313 NC_017625.1 2482055 2482312 R KEGG: ssn:SSON_1801 hypothetical protein; hypothetical protein complement(2482055..2482312) Escherichia coli DH1 12705916 YP_006092247.1 CDS EcDH1_2314 NC_017625.1 2482585 2483565 R PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein complement(2482585..2483565) Escherichia coli DH1 12705917 YP_006092248.1 CDS EcDH1_2315 NC_017625.1 2483755 2484786 D PFAM: MscS Mechanosensitive ion channel; KEGG: sbc:SbBS512_E1570 transporter, small conductance mechanosensitive ion channel family; mechanosensitive ion channel protein MscS 2483755..2484786 Escherichia coli DH1 12705918 YP_006092249.1 CDS EcDH1_2316 NC_017625.1 2484837 2486450 R PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_1804 putative transport periplasmic protein; family 5 extracellular solute-binding protein complement(2484837..2486450) Escherichia coli DH1 12705919 YP_006092250.1 CDS EcDH1_2317 NC_017625.1 2486787 2487686 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_1734 putative transcriptional regulator LysR-type; LysR family transcriptional regulator complement(2486787..2487686) Escherichia coli DH1 12705920 YP_006092251.1 CDS EcDH1_2318 NC_017625.1 2487824 2488744 D KEGG: ssn:SSON_1806 hypothetical protein; hypothetical protein 2487824..2488744 Escherichia coli DH1 12705921 YP_006092252.1 CDS EcDH1_2319 NC_017625.1 2488815 2488997 D KEGG: sbc:SbBS512_E1562 hypothetical protein; hypothetical protein 2488815..2488997 Escherichia coli DH1 12705922 YP_006092253.1 CDS EcDH1_2320 NC_017625.1 2489019 2489807 D PFAM: peptidase M14 carboxypeptidase A; KEGG: sbo:SBO_1744 murein peptide amidase A; peptidase M14 carboxypeptidase A 2489019..2489807 Escherichia coli DH1 12705923 YP_006092254.1 CDS EcDH1_2321 NC_017625.1 2489782 2490747 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sfv:SFV_1341 putative muconate cycloisomerase I; mandelate racemase/muconate lactonizing protein complement(2489782..2490747) Escherichia coli DH1 12705924 YP_006092255.1 CDS EcDH1_2322 NC_017625.1 2490866 2491372 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sdy:SDY_1402 thiol peroxidase; Redoxin domain-containing protein 2490866..2491372 Escherichia coli DH1 12705925 YP_006092256.1 CDS EcDH1_2323 NC_017625.1 2491416 2492957 R PFAM: sigma-54 factor interaction domain-containing protein; amino acid-binding ACT domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: sbc:SbBS512_E1556 transcriptional regulatory protein TyrR; transcriptional regulator TyrR complement(2491416..2492957) Escherichia coli DH1 12705926 YP_006092257.1 CDS EcDH1_2324 NC_017625.1 2493105 2494166 R PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E1555 hypothetical protein; hypothetical protein complement(2493105..2494166) Escherichia coli DH1 12705927 YP_006092258.1 CDS EcDH1_2325 NC_017625.1 2494163 2495560 R PFAM: protein of unknown function DUF463 YcjX family protein; KEGG: sbc:SbBS512_E1554 hypothetical protein; hypothetical protein complement(2494163..2495560) Escherichia coli DH1 12705928 YP_006092259.1 CDS EcDH1_2326 NC_017625.1 2495716 2496714 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E1553 transcriptional regulator, LacI family; LacI family transcriptional regulator 2495716..2496714 Escherichia coli DH1 12705929 YP_006092260.1 CDS EcDH1_2327 NC_017625.1 2496825 2497730 R KEGG: sbc:SbBS512_E1552 monomeric porin OmpG; monomeric porin OmpG complement(2496825..2497730) Escherichia coli DH1 12705930 YP_006092261.1 CDS EcDH1_2329 NC_017625.1 2498870 2499529 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_1823 putative beta-phosphoglucomutase; beta-phosphoglucomutase complement(2498870..2499529) Escherichia coli DH1 12705932 YP_006092262.1 CDS EcDH1_2330 NC_017625.1 2499526 2501793 R PFAM: glycoside hydrolase family 65 domain protein; glycoside hydrolase family 65 central catalytic; KEGG: ssn:SSON_1824 hypothetical protein; Kojibiose phosphorylase complement(2499526..2501793) Escherichia coli DH1 12705933 YP_006092263.1 CDS EcDH1_2331 NC_017625.1 2501790 2502845 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ssn:SSON_1825 putative dehydrogenase; oxidoreductase domain-containing protein complement(2501790..2502845) Escherichia coli DH1 12705934 YP_006092264.1 CDS EcDH1_2332 NC_017625.1 2502855 2503643 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ssn:SSON_1826 putative transient receptor potential locus; xylose isomerase domain-containing protein complement(2502855..2503643) Escherichia coli DH1 12705935 YP_006092265.1 CDS EcDH1_2333 NC_017625.1 2503662 2504714 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: sfv:SFV_1329 putative oxidoreductase; alcohol dehydrogenase complement(2503662..2504714) Escherichia coli DH1 12705936 YP_006092266.1 CDS EcDH1_2334 NC_017625.1 2504745 2505587 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_1328 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(2504745..2505587) Escherichia coli DH1 12705937 YP_006092267.1 CDS EcDH1_2335 NC_017625.1 2505574 2506455 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1829 putative binding-protein dependent transport protein; binding-protein-dependent transport system inner membrane protein complement(2505574..2506455) Escherichia coli DH1 12705938 YP_006092268.1 CDS EcDH1_2336 NC_017625.1 2506476 2507768 R PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_1830 putative transport periplasmic protein; extracellular solute-binding protein complement(2506476..2507768) Escherichia coli DH1 12705939 YP_006092269.1 CDS EcDH1_2337 NC_017625.1 2507782 2509461 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: ses:SARI_01284 hypothetical protein; alpha amylase complement(2507782..2509461) Escherichia coli DH1 12705940 YP_006092270.1 CDS EcDH1_2338 NC_017625.1 2509674 2509988 R TIGRFAM: phage shock operon rhodanese PspE; PFAM: Rhodanese domain protein; KEGG: sbc:SbBS512_E1544 phage shock protein E; phage shock operon rhodanese PspE complement(2509674..2509988) Escherichia coli DH1 12705941 YP_006092271.1 CDS EcDH1_2339 NC_017625.1 2510063 2510284 R TIGRFAM: phage shock protein PspD; PFAM: shock protein PspD; KEGG: sdy:SDY_1937 peripheral inner membrane phage-shock protein; phage shock protein PspD complement(2510063..2510284) Escherichia coli DH1 12705942 YP_006092272.1 CDS EcDH1_2340 NC_017625.1 2510293 2510652 R TIGRFAM: phage shock protein C; PFAM: PspC domain protein; KEGG: sdy:SDY_1938 DNA-binding transcriptional activator; phage shock protein C, PspC complement(2510293..2510652) Escherichia coli DH1 12705943 YP_006092273.1 CDS EcDH1_2341 NC_017625.1 2510652 2510876 R TIGRFAM: phage shock protein B; PFAM: shock B family protein; KEGG: sdy:SDY_1939 phage shock protein B; phage shock protein B complement(2510652..2510876) Escherichia coli DH1 12705944 YP_006092274.1 CDS EcDH1_2342 NC_017625.1 2510930 2511598 R TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein; KEGG: sbc:SbBS512_E1540 phage shock protein A; phage shock protein A, PspA complement(2510930..2511598) Escherichia coli DH1 12705945 YP_006092275.1 CDS EcDH1_2343 NC_017625.1 2511765 2512742 D KEGG: sbc:SbBS512_E1539 sigma-54 dependent transcriptional regulator PspF; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; sigma54 specific transcriptional acivator, PspF, Fis family 2511765..2512742 Escherichia coli DH1 12705946 YP_006092276.1 CDS EcDH1_2344 NC_017625.1 2512862 2514127 R TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: sbo:SBO_1760 GabA aminotransferase, PLP-dependent; 4-aminobutyrate aminotransferase complement(2512862..2514127) Escherichia coli DH1 12705947 YP_006092277.1 CDS EcDH1_2345 NC_017625.1 2514165 2515445 R PFAM: FAD dependent oxidoreductase; KEGG: ssn:SSON_1839 probable oxidoreductase; FAD dependent oxidoreductase complement(2514165..2515445) Escherichia coli DH1 12705948 YP_006092278.1 CDS EcDH1_2346 NC_017625.1 2515447 2516934 R PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_1314 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; aldehyde dehydrogenase complement(2515447..2516934) Escherichia coli DH1 12705949 YP_006092279.1 CDS EcDH1_2347 NC_017625.1 2517209 2517766 R PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sdy:SDY_1945 DNA-binding transcriptional repressor; XRE family transcriptional regulator complement(2517209..2517766) Escherichia coli DH1 12705950 YP_006092280.1 CDS EcDH1_2348 NC_017625.1 2517793 2518557 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: ssn:SSON_1842 gamma-glutamyl-gamma-aminobutyrate hydrolase; peptidase C26 complement(2517793..2518557) Escherichia coli DH1 12705951 YP_006092281.1 CDS EcDH1_2349 NC_017625.1 2518769 2520187 D PFAM: glutamine synthetase catalytic region; KEGG: sfx:S1384 putative glutamine synthetase; glutamine synthetase 2518769..2520187 Escherichia coli DH1 12705952 YP_006092282.1 CDS EcDH1_2350 NC_017625.1 2520490 2521875 D PFAM: amino acid permease-associated region; KEGG: sbo:SBO_1766 putative amino acid/amine transport protein; amino acid permease 2520490..2521875 Escherichia coli DH1 12705953 YP_006092283.1 CDS EcDH1_2351 NC_017625.1 2522009 2522254 D KEGG: ssn:SSON_1845 hypothetical protein; hypothetical protein 2522009..2522254 Escherichia coli DH1 12705954 YP_006092284.1 CDS EcDH1_2352 NC_017625.1 2522567 2524210 D PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E1530 peptide ABC transporter, periplasmic peptide-binding protein; family 5 extracellular solute-binding protein 2522567..2524210 Escherichia coli DH1 12705955 YP_006092285.1 CDS EcDH1_2353 NC_017625.1 2524207 2525172 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E1529 peptide ABC transporter, permease protein SapB; binding-protein-dependent transport system inner membrane protein 2524207..2525172 Escherichia coli DH1 12705956 YP_006092286.1 CDS EcDH1_2354 NC_017625.1 2525159 2526049 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E1528 peptide ABC transporter, permease protein SapC; binding-protein-dependent transport system inner membrane protein 2525159..2526049 Escherichia coli DH1 12705957 YP_006092287.1 CDS EcDH1_2355 NC_017625.1 2526049 2527041 D KEGG: sbc:SbBS512_E1527 peptide ABC transporter, ATP-binding protein SapD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2526049..2527041 Escherichia coli DH1 12705958 YP_006092288.1 CDS EcDH1_2356 NC_017625.1 2527043 2527849 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E1526 peptide ABC transporter, ATP-binding protein SapF; ABC transporter 2527043..2527849 Escherichia coli DH1 12705959 YP_006092289.1 CDS EcDH1_2357 NC_017625.1 2527917 2528270 D PFAM: protein of unknown function DUF559; KEGG: sbo:SBO_1773 hypothetical protein; hypothetical protein 2527917..2528270 Escherichia coli DH1 12705960 YP_006092290.1 CDS EcDH1_2358 NC_017625.1 2528638 2529426 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sbo:SBO_1774 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 2528638..2529426 Escherichia coli DH1 12705961 YP_006092291.1 CDS EcDH1_2359 NC_017625.1 2529570 2530697 D KEGG: sfv:SFV_1301 putative oxidoreductase; putative oxidoreductase 2529570..2530697 Escherichia coli DH1 12705962 YP_006092292.1 CDS EcDH1_2360 NC_017625.1 2530765 2532699 D KEGG: sbc:SbBS512_E1520 exoribonuclease II; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; exoribonuclease II; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; exoribonuclease II 2530765..2532699 Escherichia coli DH1 12705963 YP_006092293.1 CDS EcDH1_2361 NC_017625.1 2532935 2534920 D KEGG: sbo:SBO_1779 RNase II stability modulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2532935..2534920 Escherichia coli DH1 12705964 YP_006092294.1 CDS EcDH1_2362 NC_017625.1 2535068 2535241 D KEGG: sdy:SDY_1362 hypothetical protein; hypothetical protein 2535068..2535241 Escherichia coli DH1 12705965 YP_006092295.1 CDS EcDH1_2363 NC_017625.1 2535331 2536080 D PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sdy:SDY_1361 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator 2535331..2536080 Escherichia coli DH1 12705966 YP_006092296.1 CDS EcDH1_2364 NC_017625.1 2536349 2536567 D KEGG: sbc:SbBS512_E1514 osmotically inducible lipoprotein B; osmotically inducible lipoprotein B 2536349..2536567 Escherichia coli DH1 12705967 YP_006092297.1 CDS EcDH1_2365 NC_017625.1 2536693 2537019 R PFAM: translation initiation factor SUI1; KEGG: ssn:SSON_1858 translation initiation factor SUI1; translation initiation factor SUI1 complement(2536693..2537019) Escherichia coli DH1 12705968 YP_006092298.1 CDS EcDH1_2366 NC_017625.1 2537019 2537816 R KEGG: ssn:SSON_1859 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(2537019..2537816) Escherichia coli DH1 12705969 YP_006092299.1 CDS EcDH1_2367 NC_017625.1 2537950 2539119 R SMART: Tetratricopeptide domain protein; KEGG: sbc:SbBS512_E1508 tetratricopeptide repeat protein; hypothetical protein complement(2537950..2539119) Escherichia coli DH1 12705970 YP_006092300.1 CDS EcDH1_2368 NC_017625.1 2539126 2539434 R PFAM: protein of unknown function DUF1049; KEGG: sbc:SbBS512_E1507 hypothetical protein; hypothetical protein complement(2539126..2539434) Escherichia coli DH1 12705971 YP_006092301.1 CDS EcDH1_2369 NC_017625.1 2539583 2540347 R PFAM: phosphoesterase PA-phosphatase related; KEGG: sdy:SDY_1354 phosphatidylglycerophosphatase B; Phosphatidylglycerophosphatase complement(2539583..2540347) Escherichia coli DH1 12705972 YP_006092302.1 CDS EcDH1_2370 NC_017625.1 2540517 2541107 D PFAM: GTP cyclohydrolase II; KEGG: sbo:SBO_1787 GTP cyclohydrolase II; GTP cyclohydrolase II 2540517..2541107 Escherichia coli DH1 12705973 YP_006092303.1 CDS EcDH1_2371 NC_017625.1 2541171 2543846 R TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: sfv:SFV_1289 aconitate hydratase; aconitate hydratase 1 complement(2541171..2543846) Escherichia coli DH1 12705974 YP_006092304.1 CDS EcDH1_2372 NC_017625.1 2544219 2544386 R KEGG: sbc:SbBS512_E1503 hypothetical protein; hypothetical protein complement(2544219..2544386) Escherichia coli DH1 12705975 YP_006092305.1 CDS EcDH1_2373 NC_017625.1 2544389 2544517 R KEGG: sdy:SDY_1348 hypothetical protein; hypothetical protein complement(2544389..2544517) Escherichia coli DH1 12705976 YP_006092306.1 CDS EcDH1_2374 NC_017625.1 2544848 2545822 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E1501 HTH-type transcriptional regulator CysB; LysR family transcriptional regulator complement(2544848..2545822) Escherichia coli DH1 12705977 YP_006092307.1 CDS EcDH1_2375 NC_017625.1 2546032 2548629 R KEGG: sbo:SBO_1792 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase I zinc ribbon domain protein ; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I complement(2546032..2548629) Escherichia coli DH1 12705978 YP_006092308.1 CDS EcDH1_2376 NC_017625.1 2549009 2549260 D KEGG: sdy:SDY_1343 hypothetical protein; hypothetical protein 2549009..2549260 Escherichia coli DH1 12705979 YP_006092309.1 CDS EcDH1_2377 NC_017625.1 2549296 2550345 R PFAM: peptidase S49; Peptidase S49 domain protein; KEGG: ssn:SSON_1871 predicted inner membrane peptidase; Peptidase S49 domain protein complement(2549296..2550345) Escherichia coli DH1 12705980 YP_006092310.1 CDS EcDH1_2378 NC_017625.1 2550565 2551323 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ssn:SSON_1872 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2550565..2551323 Escherichia coli DH1 12705981 YP_006092311.1 CDS EcDH1_2379 NC_017625.1 2551320 2551910 D KEGG: ssn:SSON_1873 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 2551320..2551910 Escherichia coli DH1 12705982 YP_006092312.1 CDS EcDH1_2380 NC_017625.1 2551950 2552825 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sbo:SBO_1797 23S rRNA pseudouridylate synthase B; pseudouridine synthase complement(2551950..2552825) Escherichia coli DH1 12705983 YP_006092313.1 CDS EcDH1_2381 NC_017625.1 2553036 2554931 R KEGG: sbc:SbBS512_E1492 hypothetical protein; hypothetical protein complement(2553036..2554931) Escherichia coli DH1 12705984 YP_006092314.1 CDS EcDH1_2382 NC_017625.1 2554959 2555579 R TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sbc:SbBS512_E1491 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein complement(2554959..2555579) Escherichia coli DH1 12705985 YP_006092315.1 CDS EcDH1_2383 NC_017625.1 2555576 2556457 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sfx:S1354 putative enzyme; PHP domain-containing protein complement(2555576..2556457) Escherichia coli DH1 12705986 YP_006092316.1 CDS EcDH1_2384 NC_017625.1 2556731 2558293 D TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I domain protein; Chorismate binding-like; KEGG: sfv:SFV_1278 anthranilate synthase component I; anthranilate synthase component I 2556731..2558293 Escherichia coli DH1 12705987 YP_006092317.1 CDS EcDH1_2385 NC_017625.1 2558293 2559888 D TIGRFAM: anthranilate phosphoribosyltransferase; glutamine amidotransferase of anthranilate synthase; PFAM: glycosyl transferase family 3; glutamine amidotransferase class-I; Glycosyl transferase, family 3-like; KEGG: ssn:SSON_1880 bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase; anthranilate phosphoribosyltransferase 2558293..2559888 Escherichia coli DH1 12705988 YP_006092318.1 CDS EcDH1_2386 NC_017625.1 2559892 2561250 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); Indole-3-glycerol phosphate synthase; KEGG: sbc:SbBS512_E1487 tryptophan biosynthesis protein trpCF; Indole-3-glycerol-phosphate synthase., Phosphoribosylanthranilate isomerase 2559892..2561250 Escherichia coli DH1 12705989 YP_006092319.1 CDS EcDH1_2387 NC_017625.1 2561262 2562455 D TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sfv:SFV_1275 tryptophan synthase subunit beta; tryptophan synthase subunit beta 2561262..2562455 Escherichia coli DH1 12705990 YP_006092320.1 CDS EcDH1_2388 NC_017625.1 2562455 2563261 D KEGG: sfx:S1349 tryptophan synthase subunit alpha; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha 2562455..2563261 Escherichia coli DH1 12705991 YP_006092321.1 CDS EcDH1_2389 NC_017625.1 2563642 2563821 D KEGG: sfv:SFV_1273 hypothetical protein; hypothetical protein 2563642..2563821 Escherichia coli DH1 12705992 YP_006092322.1 CDS EcDH1_2390 NC_017625.1 2563907 2564407 D PFAM: protein of unknown function DUF892; KEGG: sfv:SFV_1272 putative structural protein; hypothetical protein 2563907..2564407 Escherichia coli DH1 12705993 YP_006092323.1 CDS EcDH1_2391 NC_017625.1 2564453 2564959 D PFAM: protein of unknown function DUF892; KEGG: sfv:SFV_1271 hypothetical protein; hypothetical protein 2564453..2564959 Escherichia coli DH1 12705994 YP_006092324.1 CDS EcDH1_2392 NC_017625.1 2565019 2565657 R PFAM: OmpW family protein; KEGG: sbo:SBO_1809 outer membrane protein W; OmpW family protein complement(2565019..2565657) Escherichia coli DH1 12705995 YP_006092325.1 CDS EcDH1_2393 NC_017625.1 2566014 2566757 D PFAM: protein of unknown function UPF0259; KEGG: ssn:SSON_1911 hypothetical protein; hypothetical protein 2566014..2566757 Escherichia coli DH1 12705996 YP_006092326.1 CDS EcDH1_2394 NC_017625.1 2566787 2567326 D TIGRFAM: intracellular septation protein A; PFAM: Intracellular septation protein A; KEGG: sbc:SbBS512_E1423 intracellular septation protein A; intracellular septation protein A 2566787..2567326 Escherichia coli DH1 12705997 YP_006092327.1 CDS EcDH1_2395 NC_017625.1 2567431 2567829 D PFAM: thioesterase superfamily protein; KEGG: sdy:SDY_1317 predicted hydrolase; thioesterase superfamily protein 2567431..2567829 Escherichia coli DH1 12705998 YP_006092328.1 CDS EcDH1_2396 NC_017625.1 2567869 2568603 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: sbo:SBO_1813 membrane spanning protein in TonB-ExbB-ExbD complex; transduces proton motive force of the cytoplasmic membrane to outer membrane transporters; involved in the transport of ron-siderophore complexes, vitamin B12 and colicins; TonB family protein complement(2567869..2568603) Escherichia coli DH1 12705999 YP_006092329.1 CDS EcDH1_2397 NC_017625.1 2568812 2569108 D PFAM: YCII-related; KEGG: sbo:SBO_1814 YciI-like protein; hypothetical protein 2568812..2569108 Escherichia coli DH1 12706000 YP_006092330.1 CDS EcDH1_2398 NC_017625.1 2569408 2570661 D PFAM: TrkA-N domain protein; Ion transport 2 domain protein; KEGG: sbo:SBO_1817 voltage-gated potassium channel; TrkA-N domain-containing protein 2569408..2570661 Escherichia coli DH1 12706001 YP_006092331.1 CDS EcDH1_2399 NC_017625.1 2571032 2572492 D PFAM: phospholipase D/Transphosphatidylase; KEGG: ssn:SSON_1931 cardiolipin synthetase; phospholipase D/Transphosphatidylase 2571032..2572492 Escherichia coli DH1 12706002 YP_006092332.1 CDS EcDH1_2400 NC_017625.1 2572527 2572856 D PFAM: protein of unknown function DUF440; KEGG: sdy:SDY_1306 dsDNA-mimic protein; hypothetical protein 2572527..2572856 Escherichia coli DH1 12706003 YP_006092333.1 CDS EcDH1_2401 NC_017625.1 2572909 2573913 R KEGG: sfv:SFV_1259 ATP-binding protein of oligopeptide ABC transport system; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2572909..2573913) Escherichia coli DH1 12706004 YP_006092334.1 CDS EcDH1_2402 NC_017625.1 2573910 2574923 R KEGG: sbc:SbBS512_E1415 oligopeptide ABC transporter, ATP-binding protein OppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2573910..2574923) Escherichia coli DH1 12706005 YP_006092335.1 CDS EcDH1_2403 NC_017625.1 2574935 2575843 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1935 oligopeptide transport permease protein-like protein; binding-protein-dependent transport system inner membrane protein complement(2574935..2575843) Escherichia coli DH1 12706006 YP_006092336.1 CDS EcDH1_2404 NC_017625.1 2575858 2576778 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_1823 oligopeptide transporter permease; alkaline phosphatase complement(2575858..2576778) Escherichia coli DH1 12706007 YP_006092337.1 CDS EcDH1_2405 NC_017625.1 2576864 2578540 R PFAM: extracellular solute-binding protein family 5; KEGG: sbo:SBO_1824 oligopeptide transport periplasmic binding protein; family 5 extracellular solute-binding protein complement(2576864..2578540) Escherichia coli DH1 12706008 YP_006092338.1 CDS EcDH1_2406 NC_017625.1 2578779 2579075 D hypothetical protein 2578779..2579075 Escherichia coli DH1 12706009 YP_006092339.1 CDS EcDH1_2407 NC_017625.1 2579051 2579206 R hypothetical protein complement(2579051..2579206) Escherichia coli DH1 12706010 YP_006092340.1 CDS EcDH1_2408 NC_017625.1 2579233 2579880 R PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ssn:SSON_1938 hypothetical protein; multiple antibiotic resistance (MarC)-like protein complement(2579233..2579880) Escherichia coli DH1 12706011 YP_006092341.1 CDS EcDH1_2409 NC_017625.1 2580357 2583032 D PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: sdy:SDY_1295 CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase/pyruvate-formate-lyase deactivase; iron-containing alcohol dehydrogenase 2580357..2583032 Escherichia coli DH1 12706012 YP_006092342.1 CDS EcDH1_2411 NC_017625.1 2584334 2584951 R PFAM: thymidine kinase; KEGG: sbo:SBO_1831 thymidine kinase; thymidine kinase complement(2584334..2584951) Escherichia coli DH1 12706014 YP_006092343.1 CDS EcDH1_2412 NC_017625.1 2585556 2585969 D PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sdy:SDY_1289 global DNA-binding transcriptional dual regulator H-NS; histone family protein nucleoid-structuring protein H-NS 2585556..2585969 Escherichia coli DH1 12706015 YP_006092344.1 CDS EcDH1_2413 NC_017625.1 2586113 2587021 R KEGG: sdy:SDY_1288 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(2586113..2587021) Escherichia coli DH1 12706016 YP_006092345.1 CDS EcDH1_2415 NC_017625.1 2588328 2589272 R PFAM: Patatin; KEGG: ssn:SSON_1945 hypothetical protein; patatin complement(2588328..2589272) Escherichia coli DH1 12706018 YP_006092346.1 CDS EcDH1_2416 NC_017625.1 2589346 2589804 D PFAM: SEC-C motif domain protein; KEGG: sbc:SbBS512_E1398 sec-C motif domain protein; SEC-C motif domain-containing protein 2589346..2589804 Escherichia coli DH1 12706019 YP_006092347.1 CDS EcDH1_2417 NC_017625.1 2589854 2590696 D TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: sbo:SBO_1837 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 2589854..2590696 Escherichia coli DH1 12706020 YP_006092348.1 CDS EcDH1_2418 NC_017625.1 2591952 2592629 R KEGG: sbc:SbBS512_E1395 respiratory nitrate reductase 1, gamma subunit; TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit; respiratory nitrate reductase subunit gamma complement(2591952..2592629) Escherichia coli DH1 12706023 YP_006092349.1 CDS EcDH1_2419 NC_017625.1 2592629 2593339 R TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit; KEGG: sdy:SDY_1281 nitrate reductase 1, delta subunit, assembly function; nitrate reductase molybdenum cofactor assembly chaperone complement(2592629..2593339) Escherichia coli DH1 12706024 YP_006092350.1 CDS EcDH1_2420 NC_017625.1 2593336 2594874 R TIGRFAM: nitrate reductase, beta subunit; KEGG: sfv:SFV_1241 nitrate reductase 1, beta subunit; nitrate reductase subunit beta complement(2593336..2594874) Escherichia coli DH1 12706025 YP_006092351.1 CDS EcDH1_2422 NC_017625.1 2599130 2600521 R TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E1391 nitrite extrusion protein 1; nitrite transporter complement(2599130..2600521) Escherichia coli DH1 12706027 YP_006092352.1 CDS EcDH1_2423 NC_017625.1 2600616 2600834 R KEGG: sbc:SbBS512_E1390 hypothetical protein; hypothetical protein complement(2600616..2600834) Escherichia coli DH1 12706028 YP_006092353.1 CDS EcDH1_2424 NC_017625.1 2600860 2602656 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sfv:SFV_1238 nitrate/nitrite sensor protein NarX; histidine kinase 2600860..2602656 Escherichia coli DH1 12706029 YP_006092354.1 CDS EcDH1_2425 NC_017625.1 2602649 2603299 D PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: sdy:SDY_1275 DNA-binding response regulator in two-component regulatory system with NarX (or NarQ); LuxR family two component transcriptional regulator 2602649..2603299 Escherichia coli DH1 12706030 YP_006092355.1 CDS EcDH1_2426 NC_017625.1 2603300 2604694 R KEGG: sbc:SbBS512_E1387 putative invasin; putative invasin complement(2603300..2604694) Escherichia coli DH1 12706031 YP_006092356.1 CDS EcDH1_2427 NC_017625.1 2604879 2605232 D PFAM: DsrE family protein; KEGG: sdy:SDY_1271 hypothetical protein; DsrE family protein 2604879..2605232 Escherichia coli DH1 12706032 YP_006092357.1 CDS EcDH1_2428 NC_017625.1 2605276 2605992 R PFAM: ChaC family protein; KEGG: sfv:SFV_1234 cation transport regulator; ChaC family protein complement(2605276..2605992) Escherichia coli DH1 12706033 YP_006092358.1 CDS EcDH1_2429 NC_017625.1 2606129 2606359 R PFAM: ChaB family protein; KEGG: sdy:SDY_1269 cation transport regulator; ChaB family protein complement(2606129..2606359) Escherichia coli DH1 12706034 YP_006092359.1 CDS EcDH1_2430 NC_017625.1 2606629 2607729 D TIGRFAM: calcium/proton exchanger; PFAM: sodium/calcium exchanger membrane region; KEGG: sdy:SDY_1266 calcium/sodium:proton antiporter; calcium/proton exchanger 2606629..2607729 Escherichia coli DH1 12706035 YP_006092360.1 CDS EcDH1_2431 NC_017625.1 2608668 2608775 D KEGG: sbo:SBO_1851 hypothetical protein; hypothetical protein 2608668..2608775 Escherichia coli DH1 12706036 YP_006092361.1 CDS EcDH1_2432 NC_017625.1 2609459 2610313 R TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: sdy:SDY_1264 2-dehydro-3-deoxyphosphooctonate aldolase; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2609459..2610313) Escherichia coli DH1 12706037 YP_006092362.1 CDS EcDH1_2433 NC_017625.1 2610349 2611158 R KEGG: sbc:SbBS512_E1378 sirB1 protein; sirB1 protein complement(2610349..2611158) Escherichia coli DH1 12706038 YP_006092363.1 CDS EcDH1_2434 NC_017625.1 2611162 2611554 R PFAM: Invasion gene expression up-regulator SirB; KEGG: sdy:SDY_1262 putative transcriptional regulator; Invasion gene expression up-regulator SirB complement(2611162..2611554) Escherichia coli DH1 12706039 YP_006092364.1 CDS EcDH1_2435 NC_017625.1 2611551 2612384 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: sbc:SbBS512_E1376 protein-(glutamine-N5) methyltransferase, release factor-specific; HemK family modification methylase complement(2611551..2612384) Escherichia coli DH1 12706040 YP_006092365.1 CDS EcDH1_2436 NC_017625.1 2612384 2613466 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: sdy:SDY_1260 peptide chain release factor 1; peptide chain release factor 1 complement(2612384..2613466) Escherichia coli DH1 12706041 YP_006092366.1 CDS EcDH1_2437 NC_017625.1 2613508 2614764 R KEGG: sdy:SDY_1259 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Shikimate/quinate 5-dehydrogenase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; glutamyl-tRNA reductase complement(2613508..2614764) Escherichia coli DH1 12706042 YP_006092367.1 CDS EcDH1_2438 NC_017625.1 2614978 2615601 D PFAM: outer membrane lipoprotein LolB; KEGG: sbo:SBO_1858 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 2614978..2615601 Escherichia coli DH1 12706043 YP_006092368.1 CDS EcDH1_2439 NC_017625.1 2615601 2616452 D KEGG: sbc:SbBS512_E1372 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2615601..2616452 Escherichia coli DH1 12706044 YP_006092369.1 CDS EcDH1_2440 NC_017625.1 2616537 2617550 D KEGG: sec:SC1774 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2616537..2617550 Escherichia coli DH1 12706045 YP_006092370.1 CDS EcDH1_2441 NC_017625.1 2617702 2619354 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdy:SDY_1255 putative sulfate transporter YchM; sulfate transporter 2617702..2619354 Escherichia coli DH1 12706046 YP_006092371.1 CDS EcDH1_2442 NC_017625.1 2619409 2619687 R KEGG: sbc:SbBS512_E1369 hypothetical protein; hypothetical protein complement(2619409..2619687) Escherichia coli DH1 12706047 YP_006092372.1 CDS EcDH1_2443 NC_017625.1 2619965 2620549 D PFAM: peptidyl-tRNA hydrolase; KEGG: ssn:SSON_1974 peptidyl-tRNA hydrolase; Aminoacyl-tRNA hydrolase 2619965..2620549 Escherichia coli DH1 12706048 YP_006092373.1 CDS EcDH1_2444 NC_017625.1 2620666 2621757 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: sdy:SDY_1252 translation-associated GTPase; GTP-binding protein YchF 2620666..2621757 Escherichia coli DH1 12706049 YP_006092374.1 CDS EcDH1_2445 NC_017625.1 2622002 2622181 R KEGG: sbc:SbBS512_E1366 hypothetical protein; hypothetical protein complement(2622002..2622181) Escherichia coli DH1 12706050 YP_006092375.1 CDS EcDH1_2446 NC_017625.1 2622526 2625393 D TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Pertactin; Autotransporter beta- domain protein; KEGG: sfx:S1289 putative adhesion and penetration protein; outer membrane autotransporter barrel domain-containing protein 2622526..2625393 Escherichia coli DH1 12706051 YP_006092376.1 CDS EcDH1_2447 NC_017625.1 2625493 2627412 R PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; GAF domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: sfx:S1288 DNA-binding transcriptional regulator DhaR; GAF modulated Fis family sigma-54 specific transcriptional regulator complement(2625493..2627412) Escherichia coli DH1 12706052 YP_006092377.1 CDS EcDH1_2448 NC_017625.1 2627640 2628710 D KEGG: sbc:SbBS512_E1359 PTS-dependent dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase; dihydroxyacetone kinase subunit DhaK 2627640..2628710 Escherichia coli DH1 12706053 YP_006092378.1 CDS EcDH1_2449 NC_017625.1 2628721 2629353 D TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: sbc:SbBS512_E1358 PTS-dependent dihydroxyacetone kinase, DhaL subunit; dihydroxyacetone kinase subunit DhaL 2628721..2629353 Escherichia coli DH1 12706054 YP_006092379.1 CDS EcDH1_2450 NC_017625.1 2629364 2630782 D TIGRFAM: phosphocarrier, HPr family; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component; phosphoryl transfer system HPr; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sbc:SbBS512_E1357 PTS-dependent dihydroxyacetone kinase, DhaM subunit; dihydroxyacetone kinase, phosphotransfer subunit 2629364..2630782 Escherichia coli DH1 12706055 YP_006092380.1 CDS EcDH1_2451 NC_017625.1 2631102 2632799 D PFAM: glycoside hydrolase family 37; KEGG: sfv:SFV_1211 trehalase; Alpha,alpha-trehalase 2631102..2632799 Escherichia coli DH1 12706056 YP_006092381.1 CDS EcDH1_2452 NC_017625.1 2632878 2633246 R KEGG: sbc:SbBS512_E1354 hypothetical protein; hypothetical protein complement(2632878..2633246) Escherichia coli DH1 12706057 YP_006092382.1 CDS EcDH1_2453 NC_017625.1 2633496 2633750 R PFAM: Transglycosylase-associated protein; KEGG: grail3.3416000201.; transglycosylase complement(2633496..2633750) Escherichia coli DH1 12706058 YP_006092383.1 CDS EcDH1_2454 NC_017625.1 2633951 2634685 D PFAM: type IV pilus assembly PilZ; YcgR family protein; KEGG: sbo:SBO_1878 hypothetical protein; YcgR family protein 2633951..2634685 Escherichia coli DH1 12706059 YP_006092384.1 CDS EcDH1_2455 NC_017625.1 2634687 2635298 R PFAM: Lytic transglycosylase catalytic; KEGG: ssn:SSON_1184 murein transglycosylase E; lytic transglycosylase complement(2634687..2635298) Escherichia coli DH1 12706060 YP_006092385.1 CDS EcDH1_2456 NC_017625.1 2635398 2636312 D PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: ssn:SSON_1185 L,D-carboxypeptidase A; Muramoyltetrapeptide carboxypeptidase 2635398..2636312 Escherichia coli DH1 12706061 YP_006092386.1 CDS EcDH1_2457 NC_017625.1 2636407 2638143 D PFAM: transporter-associated region; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sbc:SbBS512_E1349 cell volume regulation protein A; sodium/hydrogen exchanger 2636407..2638143 Escherichia coli DH1 12706062 YP_006092387.1 CDS EcDH1_2458 NC_017625.1 2638529 2639599 R KEGG: sfv:SFV_1197 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(2638529..2639599) Escherichia coli DH1 12706063 YP_006092388.1 CDS EcDH1_2459 NC_017625.1 2639609 2640907 R PFAM: FAD dependent oxidoreductase; KEGG: ssn:SSON_1181 D-amino acid dehydrogenase small subunit; Methylated-DNA--(protein)-cysteine S-methyltransferase complement(2639609..2640907) Escherichia coli DH1 12706064 YP_006092389.1 CDS EcDH1_2460 NC_017625.1 2641237 2642769 D PFAM: SpoVR family protein; KEGG: ssn:SSON_1180 hypothetical protein; SpoVR family protein 2641237..2642769 Escherichia coli DH1 12706065 YP_006092390.1 CDS EcDH1_2461 NC_017625.1 2642821 2643540 R TIGRFAM: fatty acid metabolism transcriptional regulator FadR; PFAM: regulatory protein GntR HTH; fatty acid responsive transcription factor FadR domain protein; KEGG: sdy:SDY_1224 fatty acid metabolism regulator; fatty acid metabolism transcriptional regulator FadR complement(2642821..2643540) Escherichia coli DH1 12706066 YP_006092391.1 CDS EcDH1_2462 NC_017625.1 2643761 2645302 D TIGRFAM: Na+/H+ antiporter NhaB; PFAM: Na+H+ antiporter NhaB; Citrate transporter; KEGG: sdy:SDY_1223 sodium/proton antiporter; Na+/H+ antiporter NhaB 2643761..2645302 Escherichia coli DH1 12706067 YP_006092392.1 CDS EcDH1_2463 NC_017625.1 2645448 2645978 D PFAM: Disulphide bond formation protein DsbB; KEGG: sdy:SDY_1222 disulfide bond formation protein B; disulfice bond formation protein DsbB 2645448..2645978 Escherichia coli DH1 12706068 YP_006092393.1 CDS EcDH1_2464 NC_017625.1 2646024 2647292 R PFAM: UMUC domain protein DNA-repair protein; KEGG: sfv:SFV_1191 DNA polymerase V subunit UmuC; DNA-directed DNA polymerase complement(2646024..2647292) Escherichia coli DH1 12706069 YP_006092394.1 CDS EcDH1_2465 NC_017625.1 2647292 2647711 R PFAM: peptidase S24 and S26 domain protein; KEGG: sbc:SbBS512_E1340 protein UmuD; peptidase S24 and S26 domain-containing protein complement(2647292..2647711) Escherichia coli DH1 12706070 YP_006092395.1 CDS EcDH1_2466 NC_017625.1 2648084 2648995 D PFAM: Haemolysin E family protein; KEGG: stt:t1477 hemolysin E; Hemolysin E family protein 2648084..2648995 Escherichia coli DH1 12706071 YP_006092396.1 CDS EcDH1_2467 NC_017625.1 2649202 2649648 R PFAM: protein of unknown function UPF0153; KEGG: sfv:SFV_1188 hypothetical protein; hypothetical protein complement(2649202..2649648) Escherichia coli DH1 12706072 YP_006092397.1 CDS EcDH1_2468 NC_017625.1 2649740 2650399 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sbc:SbBS512_E1335 fumarylacetoacetate hydrolase family protein; 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase complement(2649740..2650399) Escherichia coli DH1 12706073 YP_006092398.1 CDS EcDH1_2469 NC_017625.1 2650471 2650764 R PFAM: protein of unknown function DUF709; KEGG: sbc:SbBS512_E1334 hypothetical protein; hypothetical protein complement(2650471..2650764) Escherichia coli DH1 12706074 YP_006092399.1 CDS EcDH1_2470 NC_017625.1 2651006 2651407 D PFAM: peptidase domain protein; KEGG: sdy:SDY_1210 hypothetical protein; peptidase domain-containing protein 2651006..2651407 Escherichia coli DH1 12706075 YP_006092400.1 CDS EcDH1_2471 NC_017625.1 2651510 2651878 R PFAM: Fels-1 Propage domain protein; KEGG: sbc:SbBS512_E1331 putative fels-1 prophage protein; Fels-1 Propage domain protein complement(2651510..2651878) Escherichia coli DH1 12706076 YP_006092401.1 CDS EcDH1_2472 NC_017625.1 2652398 2653093 D TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: sdy:SDY_1207 septum formation inhibitor; septum site-determining protein MinC 2652398..2653093 Escherichia coli DH1 12706077 YP_006092402.1 CDS EcDH1_2473 NC_017625.1 2653117 2653929 D TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: sdy:SDY_1206 cell division inhibitor MinD; septum site-determining protein MinD 2653117..2653929 Escherichia coli DH1 12706078 YP_006092403.1 CDS EcDH1_2474 NC_017625.1 2653933 2654199 D TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: sdy:SDY_1205 cell division topological specificity factor MinE; cell division topological specificity factor MinE 2653933..2654199 Escherichia coli DH1 12706079 YP_006092404.1 CDS EcDH1_2476 NC_017625.1 2655550 2655834 D KEGG: sbc:SbBS512_E1325 hypothetical protein; hypothetical protein 2655550..2655834 Escherichia coli DH1 12706081 YP_006092405.1 CDS EcDH1_2477 NC_017625.1 2655844 2656173 D KEGG: sbc:SbBS512_E1324 hypothetical protein; hypothetical protein 2655844..2656173 Escherichia coli DH1 12706082 YP_006092406.1 CDS EcDH1_2479 NC_017625.1 2659277 2659495 R hypothetical protein complement(2659277..2659495) Escherichia coli DH1 12706084 YP_006092407.1 CDS EcDH1_2480 NC_017625.1 2659627 2661192 R PFAM: EAL domain protein; KEGG: sfx:S1241 hypothetical protein; diguanylate phosphodiesterase complement(2659627..2661192) Escherichia coli DH1 12706085 YP_006092408.1 CDS EcDH1_2481 NC_017625.1 2661482 2661730 R KEGG: kpe:KPK_3791 hypothetical protein; hypothetical protein complement(2661482..2661730) Escherichia coli DH1 12706086 YP_006092409.1 CDS EcDH1_2482 NC_017625.1 2661843 2662109 R KEGG: kpe:KPK_3797 hypothetical protein; hypothetical protein complement(2661843..2662109) Escherichia coli DH1 12706087 YP_006092410.1 CDS EcDH1_2483 NC_017625.1 2662453 2662689 R KEGG: ent:Ent638_1756 hypothetical protein; hypothetical protein complement(2662453..2662689) Escherichia coli DH1 12706088 YP_006092411.1 CDS EcDH1_2484 NC_017625.1 2663003 2664214 D PFAM: EAL domain protein; BLUF domain protein; KEGG: kpn:KPN_00782 hypothetical protein; diguanylate phosphodiesterase 2663003..2664214 Escherichia coli DH1 12706089 YP_006092412.1 CDS EcDH1_2485 NC_017625.1 2664419 2665150 D PFAM: regulatory protein MerR; KEGG: sbc:SbBS512_E1317 transcriptional regulator MlrA; MerR family transcriptional regulator 2664419..2665150 Escherichia coli DH1 12706090 YP_006092413.1 CDS EcDH1_2486 NC_017625.1 2665371 2665775 D PFAM: protein of unknown function DUF1398; KEGG: sbc:SbBS512_E1316 hypothetical protein; hypothetical protein 2665371..2665775 Escherichia coli DH1 12706091 YP_006092414.1 CDS EcDH1_2488 NC_017625.1 2667299 2668132 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: dac:Daci_3155 HNH endonuclease; HNH endonuclease complement(2667299..2668132) Escherichia coli DH1 12706093 YP_006092415.1 CDS EcDH1_2489 NC_017625.1 2668239 2668793 R PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: stt:t2667 putative DNA-invertase; Resolvase domain-containing protein complement(2668239..2668793) Escherichia coli DH1 12706094 YP_006092416.1 CDS EcDH1_2490 NC_017625.1 2668983 2669615 D PFAM: tail assembly chaperone gp38; KEGG: stt:t3435 hypothetical protein; tail assembly chaperone gp38 2668983..2669615 Escherichia coli DH1 12706095 YP_006092417.1 CDS EcDH1_2491 NC_017625.1 2669587 2670189 R PFAM: tail assembly chaperone gp38; KEGG: stt:t1349 putative bacteriophage tail fiber assembly protein; tail assembly chaperone gp38 complement(2669587..2670189) Escherichia coli DH1 12706096 YP_006092418.1 CDS EcDH1_2492 NC_017625.1 2670189 2670977 R PFAM: Tail Collar domain protein; KEGG: sfx:S0319 hypothetical protein; Tail Collar domain-containing protein complement(2670189..2670977) Escherichia coli DH1 12706097 YP_006092419.1 CDS EcDH1_2493 NC_017625.1 2670981 2671565 R KEGG: sfv:SFV_0254 hypothetical protein; hypothetical protein complement(2670981..2671565) Escherichia coli DH1 12706098 YP_006092420.1 CDS EcDH1_2494 NC_017625.1 2671556 2672305 R PFAM: Baseplate J family protein; KEGG: sfv:SFV_0253 hypothetical protein; baseplate J family protein complement(2671556..2672305) Escherichia coli DH1 12706099 YP_006092421.1 CDS EcDH1_2495 NC_017625.1 2672274 2672747 R KEGG: sew:SeSA_A2265 phage portal protein, HK97 family; phage portal protein, HK97 family complement(2672274..2672747) Escherichia coli DH1 12706100 YP_006092422.1 CDS EcDH1_2496 NC_017625.1 2672747 2672929 R KEGG: sed:SeD_A2270 hypothetical protein; hypothetical protein complement(2672747..2672929) Escherichia coli DH1 12706101 YP_006092423.1 CDS EcDH1_2497 NC_017625.1 2672941 2674308 R PFAM: Terminase; KEGG: sew:SeSA_A2267 putative phage terminase, large subunit; terminase complement(2672941..2674308) Escherichia coli DH1 12706102 YP_006092424.1 CDS EcDH1_2498 NC_017625.1 2674318 2674656 R hypothetical protein complement(2674318..2674656) Escherichia coli DH1 12706103 YP_006092425.1 CDS EcDH1_2499 NC_017625.1 2674653 2675210 R KEGG: sbo:SBO_0254 hypothetical protein; hypothetical protein complement(2674653..2675210) Escherichia coli DH1 12706104 YP_006092426.1 CDS EcDH1_2500 NC_017625.1 2675254 2675454 R KEGG: sbc:SbBS512_E0246 hypothetical protein; hypothetical protein complement(2675254..2675454) Escherichia coli DH1 12706105 YP_006092427.1 CDS EcDH1_2501 NC_017625.1 2675545 2676219 D PFAM: peptidase S24 and S26 domain protein; KEGG: sbo:SBO_0255 putative phage repressor; peptidase S24 and S26 domain-containing protein 2675545..2676219 Escherichia coli DH1 12706106 YP_006092428.1 CDS EcDH1_2502 NC_017625.1 2676394 2676702 D KEGG: sty:STY2068 hypothetical protein; hypothetical protein 2676394..2676702 Escherichia coli DH1 12706107 YP_006092429.1 CDS EcDH1_2503 NC_017625.1 2676640 2676981 R hypothetical protein complement(2676640..2676981) Escherichia coli DH1 12706108 YP_006092430.1 CDS EcDH1_2504 NC_017625.1 2677446 2677691 D PFAM: Excisionase domain protein; KEGG: kpe:KPK_3405 putative excisionase; Excisionase domain protein 2677446..2677691 Escherichia coli DH1 12706109 YP_006092431.1 CDS EcDH1_2506 NC_017625.1 2678640 2679506 R PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit complement(2678640..2679506) Escherichia coli DH1 12706111 YP_006092432.1 CDS EcDH1_2507 NC_017625.1 2679503 2679802 R PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein complement(2679503..2679802) Escherichia coli DH1 12706112 YP_006092433.1 CDS EcDH1_2508 NC_017625.1 2680151 2681044 R KEGG: spl:Spea_3454 phage exclusion protein Lit; phage exclusion protein Lit complement(2680151..2681044) Escherichia coli DH1 12706113 YP_006092434.1 CDS EcDH1_2509 NC_017625.1 2681511 2682206 D KEGG: kpn:KPN_04689 hypothetical protein; hypothetical protein 2681511..2682206 Escherichia coli DH1 12706114 YP_006092435.1 CDS EcDH1_2510 NC_017625.1 2682207 2682872 D KEGG: kpn:KPN_04690 hypothetical protein; hypothetical protein 2682207..2682872 Escherichia coli DH1 12706115 YP_006092436.1 CDS EcDH1_2511 NC_017625.1 2683366 2684616 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: sbc:SbBS512_E1315 isocitrate dehydrogenase, NADP-dependent; isocitrate dehydrogenase complement(2683366..2684616) Escherichia coli DH1 12706116 YP_006092437.1 CDS EcDH1_2512 NC_017625.1 2684788 2685441 D PFAM: pseudouridine synthase; KEGG: sfv:SFV_1170 23S rRNA pseudouridine synthase E; pseudouridine synthase 2684788..2685441 Escherichia coli DH1 12706117 YP_006092438.1 CDS EcDH1_2513 NC_017625.1 2685451 2685912 D PFAM: NUDIX hydrolase; KEGG: sdy:SDY_2018 putative phosphohydrolase; NUDIX hydrolase 2685451..2685912 Escherichia coli DH1 12706118 YP_006092439.1 CDS EcDH1_2514 NC_017625.1 2685966 2687072 D PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; KEGG: sbo:SBO_1906 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 2685966..2687072 Escherichia coli DH1 12706119 YP_006092440.1 CDS EcDH1_2515 NC_017625.1 2687108 2687749 D PFAM: protein of unknown function DUF489; KEGG: sdy:SDY_2020 hypothetical protein; hypothetical protein 2687108..2687749 Escherichia coli DH1 12706120 YP_006092441.1 CDS EcDH1_2516 NC_017625.1 2687753 2689123 D TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase domain protein; KEGG: sbc:SbBS512_E1309 adenylosuccinate lyase; adenylosuccinate lyase 2687753..2689123 Escherichia coli DH1 12706121 YP_006092442.1 CDS EcDH1_2517 NC_017625.1 2689292 2689963 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_2022 DNA-binding response regulator in two-component regulatory system with PhoQ; winged helix family two component transcriptional regulator 2689292..2689963 Escherichia coli DH1 12706122 YP_006092443.1 CDS EcDH1_2518 NC_017625.1 2689963 2691423 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PhoQ Sensor domain protein; KEGG: sbc:SbBS512_E1307 sensor histidine kinase PhoQ; histidine kinase 2689963..2691423 Escherichia coli DH1 12706123 YP_006092444.1 CDS EcDH1_2519 NC_017625.1 2691499 2692620 D PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: sbc:SbBS512_E1306 cupin family protein; cupin 2691499..2692620 Escherichia coli DH1 12706124 YP_006092445.1 CDS EcDH1_2520 NC_017625.1 2692669 2693895 R KEGG: sdy:SDY_2025 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase T complement(2692669..2693895) Escherichia coli DH1 12706125 YP_006092446.1 CDS EcDH1_2521 NC_017625.1 2694145 2695281 D KEGG: sfx:S1208 putrescine/spermidine ABC transporter ATPase protein; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2694145..2695281 Escherichia coli DH1 12706126 YP_006092447.1 CDS EcDH1_2522 NC_017625.1 2695265 2696122 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_1143 spermidine/putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein 2695265..2696122 Escherichia coli DH1 12706127 YP_006092448.1 CDS EcDH1_2523 NC_017625.1 2696119 2696913 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2201 spermidine/putrescine ABC transporter, permease protein PotC; ornithine carbamoyltransferase 2696119..2696913 Escherichia coli DH1 12706128 YP_006092449.1 CDS EcDH1_2524 NC_017625.1 2696910 2697956 D PFAM: extracellular solute-binding protein family 1; KEGG: sdy:SDY_2029 spermidine/putrescine ABC transporter periplasmic substrate-binding protein; extracellular solute-binding protein 2696910..2697956 Escherichia coli DH1 12706129 YP_006092450.1 CDS EcDH1_2525 NC_017625.1 2698014 2698475 D KEGG: npu:Npun_F0186 hypothetical protein; hypothetical protein 2698014..2698475 Escherichia coli DH1 12706130 YP_006092451.1 CDS EcDH1_2526 NC_017625.1 2698472 2699260 D hypothetical protein 2698472..2699260 Escherichia coli DH1 12706131 YP_006092452.1 CDS EcDH1_2527 NC_017625.1 2699380 2700219 R PFAM: Silent information regulator protein Sir2; KEGG: sbo:SBO_1941 NAD-dependent deacetylase; silent information regulator protein Sir2 complement(2699380..2700219) Escherichia coli DH1 12706132 YP_006092453.1 CDS EcDH1_2528 NC_017625.1 2700235 2701146 R PFAM: ROK family protein; KEGG: sdy:SDY_2031 N-acetyl-D-glucosamine kinase; ROK family protein complement(2700235..2701146) Escherichia coli DH1 12706133 YP_006092454.1 CDS EcDH1_2529 NC_017625.1 2701175 2702413 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; lipoprotein releasing system, transmembrane protein LolE; PFAM: protein of unknown function DUF214; KEGG: sfv:SFV_1138 outer membrane-specific lipoprotein transporter subunit LolE; lipoprotein releasing system, transmembrane protein LolE complement(2701175..2702413) Escherichia coli DH1 12706134 YP_006092455.1 CDS EcDH1_2530 NC_017625.1 2702419 2703120 R KEGG: sbc:SbBS512_E2206 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(2702419..2703120) Escherichia coli DH1 12706135 YP_006092456.1 CDS EcDH1_2531 NC_017625.1 2703113 2704312 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: ssn:SSON_1136 outer membrane-specific lipoprotein transporter subunit LolC; lipoprotein releasing system transmembrane protein LolC/E family complement(2703113..2704312) Escherichia coli DH1 12706136 YP_006092457.1 CDS EcDH1_2532 NC_017625.1 2704574 2705647 D PFAM: acyltransferase 3; KEGG: ssn:SSON_1135 hypothetical protein; acyltransferase 3 2704574..2705647 Escherichia coli DH1 12706137 YP_006092458.1 CDS EcDH1_2533 NC_017625.1 2705727 2709221 D KEGG: sfv:SFV_1134 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2705727..2709221 Escherichia coli DH1 12706138 YP_006092459.1 CDS EcDH1_2534 NC_017625.1 2709368 2710327 D PFAM: Peptidoglycan-binding LysM; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_2037 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2709368..2710327 Escherichia coli DH1 12706139 YP_006092460.1 CDS EcDH1_2535 NC_017625.1 2710409 2710666 R PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_2038 hypothetical protein; hypothetical protein complement(2710409..2710666) Escherichia coli DH1 12706140 YP_006092461.1 CDS EcDH1_2536 NC_017625.1 2710907 2711539 D PFAM: regulatory protein TetR; KEGG: sdy:SDY_2039 hypothetical protein; TetR family transcriptional regulator 2710907..2711539 Escherichia coli DH1 12706141 YP_006092462.1 CDS EcDH1_2537 NC_017625.1 2711601 2712140 R PFAM: 17 kDa surface antigen; KEGG: sdy:SDY_2040 hypothetical protein; 17 kDa surface antigen complement(2711601..2712140) Escherichia coli DH1 12706142 YP_006092463.1 CDS EcDH1_2538 NC_017625.1 2712350 2713654 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: sfx:S1193 respiratory NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2712350..2713654) Escherichia coli DH1 12706143 YP_006092464.1 CDS EcDH1_2539 NC_017625.1 2714054 2714596 R PFAM: protein of unknown function UPF0227; KEGG: sdy:SDY_2042 hypothetical protein; hypothetical protein complement(2714054..2714596) Escherichia coli DH1 12706144 YP_006092465.1 CDS EcDH1_2540 NC_017625.1 2714619 2715644 R PFAM: glycoside hydrolase family 3 domain protein; KEGG: sfl:SF1111 beta-hexosaminidase; glycoside hydrolase family protein complement(2714619..2715644) Escherichia coli DH1 12706145 YP_006092466.1 CDS EcDH1_2541 NC_017625.1 2715655 2716479 R KEGG: sdy:SDY_2044 thiamin kinase; TIGRFAM: thiamine kinase; PFAM: aminoglycoside phosphotransferase; thiamine kinase complement(2715655..2716479) Escherichia coli DH1 12706146 YP_006092467.1 CDS EcDH1_2542 NC_017625.1 2716460 2717101 R TIGRFAM: membrane lipoprotein lipid attachment site; KEGG: sdy:SDY_2045 hypothetical protein; membrane lipoprotein lipid attachment site complement(2716460..2717101) Escherichia coli DH1 12706147 YP_006092468.1 CDS EcDH1_2543 NC_017625.1 2717115 2717492 R PFAM: protein of unknown function DUF1425; KEGG: sfv:SFV_1124 hypothetical protein; hypothetical protein complement(2717115..2717492) Escherichia coli DH1 12706148 YP_006092469.1 CDS EcDH1_2544 NC_017625.1 2717495 2717854 R PFAM: histidine triad (HIT) protein; KEGG: sdy:SDY_2047 purine nucleoside phosphoramidase; histidine triad (HIT) protein complement(2717495..2717854) Escherichia coli DH1 12706149 YP_006092470.1 CDS EcDH1_2545 NC_017625.1 2718188 2720377 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sdy:SDY_2048 ferric-rhodotorulic acid outer membrane transporter; TonB-dependent siderophore receptor 2718188..2720377 Escherichia coli DH1 12706150 YP_006092471.1 CDS EcDH1_2546 NC_017625.1 2720437 2721870 R TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, glucose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sdy:SDY_2049 glucose-specific PTS system IIBC components; PTS system glucose-specific transporter subunit IIBC complement(2720437..2721870) Escherichia coli DH1 12706151 YP_006092472.1 CDS EcDH1_2547 NC_017625.1 2722165 2722962 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sdy:SDY_2050 predicted metallodependent hydrolase; TatD family hydrolase complement(2722165..2722962) Escherichia coli DH1 12706152 YP_006092473.1 CDS EcDH1_2548 NC_017625.1 2722973 2723977 R KEGG: sbc:SbBS512_E2225 DNA polymerase III, delta' subunit; TIGRFAM: DNA polymerase III, delta prime subunit; PFAM: DNA polymerase III delta subunit; DNA polymerase III subunit delta' complement(2722973..2723977) Escherichia coli DH1 12706153 YP_006092474.1 CDS EcDH1_2549 NC_017625.1 2723974 2724615 R PFAM: thymidylate kinase; KEGG: sdy:SDY_2052 thymidylate kinase; dTMP kinase complement(2723974..2724615) Escherichia coli DH1 12706154 YP_006092475.1 CDS EcDH1_2550 NC_017625.1 2724605 2725627 R PFAM: aminodeoxychorismate lyase; KEGG: sbc:SbBS512_E2227 hypothetical protein; aminodeoxychorismate lyase complement(2724605..2725627) Escherichia coli DH1 12706155 YP_006092476.1 CDS EcDH1_2551 NC_017625.1 2725630 2726439 R TIGRFAM: aminodeoxychorismate lyase; PFAM: aminotransferase class IV; KEGG: sdy:SDY_2054 4-amino-4-deoxychorismate lyase; aminodeoxychorismate lyase complement(2725630..2726439) Escherichia coli DH1 12706156 YP_006092477.1 CDS EcDH1_2552 NC_017625.1 2726559 2727800 R TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: sfx:S1179 3-oxoacyl-(acyl carrier protein) synthase II; 3-oxoacyl-(acyl-carrier-protein) synthase 2 complement(2726559..2727800) Escherichia coli DH1 12706157 YP_006092478.1 CDS EcDH1_2553 NC_017625.1 2727888 2728124 R TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cko:CKO_01964 acyl carrier protein; acyl carrier protein complement(2727888..2728124) Escherichia coli DH1 12706158 YP_006092479.1 CDS EcDH1_2554 NC_017625.1 2728335 2729069 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sbc:SbBS512_E2231 3-oxoacyl-[acyl-carrier-protein] reductase; 3-oxoacyl-(acyl-carrier-protein) reductase complement(2728335..2729069) Escherichia coli DH1 12706159 YP_006092480.1 CDS EcDH1_2555 NC_017625.1 2729082 2730011 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: sbc:SbBS512_E2232 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase complement(2729082..2730011) Escherichia coli DH1 12706160 YP_006092481.1 CDS EcDH1_2556 NC_017625.1 2730027 2730980 R KEGG: sbc:SbBS512_E2233 3-oxoacyl-[acyl-carrier-protein] synthase 3; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: Hydroxymethylglutaryl-coenzyme A synthase domain; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(2730027..2730980) Escherichia coli DH1 12706161 YP_006092482.1 CDS EcDH1_2557 NC_017625.1 2731048 2732088 R TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: ssn:SSON_1110 fatty acid/phospholipid synthesis protein; fatty acid/phospholipid synthesis protein PlsX complement(2731048..2732088) Escherichia coli DH1 12706162 YP_006092483.1 CDS EcDH1_2558 NC_017625.1 2732199 2732372 R TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sdy:SDY_2061 50S ribosomal protein L32; 50S ribosomal protein L32 complement(2732199..2732372) Escherichia coli DH1 12706163 YP_006092484.1 CDS EcDH1_2559 NC_017625.1 2732424 2732945 R PFAM: protein of unknown function DUF177; KEGG: sdy:SDY_2062 hypothetical protein; hypothetical protein complement(2732424..2732945) Escherichia coli DH1 12706164 YP_006092485.1 CDS EcDH1_2560 NC_017625.1 2733105 2733728 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sfv:SFV_1108 Maf-like protein; maf protein 2733105..2733728 Escherichia coli DH1 12706165 YP_006092486.1 CDS EcDH1_2561 NC_017625.1 2733840 2734799 R KEGG: sfx:S1170 23S rRNA pseudouridylate synthase C; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(2733840..2734799) Escherichia coli DH1 12706166 YP_006092487.1 CDS EcDH1_2562 NC_017625.1 2735372 2738557 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; ribonuclease E and G; KEGG: sbo:SBO_1980 ribonuclease E; ribonuclease, Rne/Rng family 2735372..2738557 Escherichia coli DH1 12706167 YP_006092488.1 CDS EcDH1_2563 NC_017625.1 2738753 2739706 R TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: sbc:SbBS512_E2242 flagellar hook-associated protein 3; flagellar hook-associated protein 3 complement(2738753..2739706) Escherichia coli DH1 12706168 YP_006092489.1 CDS EcDH1_2564 NC_017625.1 2739718 2741361 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbo:SBO_1982 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK complement(2739718..2741361) Escherichia coli DH1 12706169 YP_006092490.1 CDS EcDH1_2565 NC_017625.1 2741427 2742368 R KEGG: ssn:SSON_1101 peptidoglycan hydrolase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ type-2 family protein; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ complement(2741427..2742368) Escherichia coli DH1 12706170 YP_006092491.1 CDS EcDH1_2566 NC_017625.1 2742368 2743465 R PFAM: flagellar P-ring protein; KEGG: sfx:S1164 flagellar basal body P-ring protein; flagellar P-ring protein complement(2742368..2743465) Escherichia coli DH1 12706171 YP_006092492.1 CDS EcDH1_2567 NC_017625.1 2743477 2744184 R PFAM: flagellar L-ring protein; KEGG: sfv:SFV_1101 flagellar basal body L-ring protein; flagellar L-ring protein complement(2743477..2744184) Escherichia coli DH1 12706172 YP_006092493.1 CDS EcDH1_2568 NC_017625.1 2744228 2745010 R TIGRFAM: flagellar basal-body rod protein FlgG; flagellar basal-body rod FlgG family protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sfv:SFV_1100 flagellar basal body rod protein FlgG; flagellar basal-body rod protein FlgG complement(2744228..2745010) Escherichia coli DH1 12706173 YP_006092494.1 CDS EcDH1_2569 NC_017625.1 2745182 2745937 R TIGRFAM: flagellar basal-body rod protein FlgF; flagellar basal-body rod FlgF family protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sfv:SFV_1099 flagellar basal body rod protein FlgF; flagellar basal-body rod protein FlgF complement(2745182..2745937) Escherichia coli DH1 12706174 YP_006092495.1 CDS EcDH1_2570 NC_017625.1 2745957 2747165 R PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: sbo:SBO_1988 flagellar hook protein FlgE; flagellar basal body FlaE domain-containing protein complement(2745957..2747165) Escherichia coli DH1 12706175 YP_006092496.1 CDS EcDH1_2571 NC_017625.1 2747190 2747885 R PFAM: flagellar hook capping protein; KEGG: sfv:SFV_1097 flagellar basal body rod modification protein; flagellar hook capping protein complement(2747190..2747885) Escherichia coli DH1 12706176 YP_006092497.1 CDS EcDH1_2572 NC_017625.1 2747897 2748301 R TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: sbc:SbBS512_E2251 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC complement(2747897..2748301) Escherichia coli DH1 12706177 YP_006092498.1 CDS EcDH1_2573 NC_017625.1 2748305 2748721 R TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: sbc:SbBS512_E2252 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB complement(2748305..2748721) Escherichia coli DH1 12706178 YP_006092499.1 CDS EcDH1_2574 NC_017625.1 2748876 2749535 D TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: sfv:SFV_1094 flagellar basal body P-ring biosynthesis protein FlgA; flagella basal body P-ring formation protein FlgA 2748876..2749535 Escherichia coli DH1 12706179 YP_006092500.1 CDS EcDH1_2575 NC_017625.1 2749611 2749904 D PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: sfv:SFV_1093 anti-sigma28 factor FlgM; anti-sigma-28 factor FlgM 2749611..2749904 Escherichia coli DH1 12706180 YP_006092501.1 CDS EcDH1_2576 NC_017625.1 2749909 2750325 D PFAM: FlgN family protein; KEGG: ssn:SSON_1090 protein of flagellar biosynthesis; FlgN family protein 2749909..2750325 Escherichia coli DH1 12706181 YP_006092502.1 CDS EcDH1_2577 NC_017625.1 2750365 2751900 R TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: sbc:SbBS512_E2257 integral membrane protein MviN; integral membrane protein MviN complement(2750365..2751900) Escherichia coli DH1 12706182 YP_006092503.1 CDS EcDH1_2578 NC_017625.1 2752010 2752933 R PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ssn:SSON_1088 putative virulence factor; oxidoreductase domain-containing protein complement(2752010..2752933) Escherichia coli DH1 12706183 YP_006092504.1 CDS EcDH1_2579 NC_017625.1 2752935 2753582 R PFAM: protein of unknown function DUF480; KEGG: ssn:SSON_1087 hypothetical protein; hypothetical protein complement(2752935..2753582) Escherichia coli DH1 12706184 YP_006092505.1 CDS EcDH1_2580 NC_017625.1 2753593 2754177 R PFAM: GCN5-related N-acetyltransferase; KEGG: sbc:SbBS512_E2260 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 complement(2753593..2754177) Escherichia coli DH1 12706185 YP_006092506.1 CDS EcDH1_2581 NC_017625.1 2754413 2755621 D PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E2261 multidrug resistance protein MdtH; major facilitator superfamily protein 2754413..2755621 Escherichia coli DH1 12706186 YP_006092507.1 CDS EcDH1_2582 NC_017625.1 2755685 2756332 D TIGRFAM: glutaredoxin, GrxB family; PFAM: Glutathione S-transferase domain; glutaredoxin 2 domain protein; KEGG: sbc:SbBS512_E2262 glutaredoxin, GrxB family; GrxB family glutaredoxin 2755685..2756332 Escherichia coli DH1 12706187 YP_006092508.1 CDS EcDH1_2583 NC_017625.1 2756466 2757026 D PFAM: protein of unknown function DUF1439; KEGG: sbc:SbBS512_E2264 putative lipoprotein; hypothetical protein 2756466..2757026 Escherichia coli DH1 12706188 YP_006092509.1 CDS EcDH1_2584 NC_017625.1 2757132 2758178 D KEGG: ssn:SSON_1082 dihydroorotase; TIGRFAM: dihydroorotase, homodimeric type; PFAM: amidohydrolase; dihydroorotase, homodimeric type 2757132..2758178 Escherichia coli DH1 12706189 YP_006092510.1 CDS EcDH1_2585 NC_017625.1 2758252 2758497 D PFAM: DinI family protein; KEGG: ssn:SSON_1081 DNA damage-inducible protein I; DinI family protein 2758252..2758497 Escherichia coli DH1 12706190 YP_006092511.1 CDS EcDH1_2586 NC_017625.1 2758781 2759038 D KEGG: sdy:SDY_2095 biofilm formation regulatory protein BssS; biofilm formation regulatory protein BssS 2758781..2759038 Escherichia coli DH1 12706191 YP_006092512.1 CDS EcDH1_2587 NC_017625.1 2759153 2760271 D PFAM: FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E2268 N-methyl-L-tryptophan oxidase; sarcosine oxidase 2759153..2760271 Escherichia coli DH1 12706192 YP_006092513.1 CDS EcDH1_2588 NC_017625.1 2760319 2760432 D KEGG: sdy:SDY_2097 hypothetical protein; hypothetical protein 2760319..2760432 Escherichia coli DH1 12706193 YP_006092514.1 CDS EcDH1_2589 NC_017625.1 2760693 2761259 D PFAM: cytochrome B561; KEGG: sbc:SbBS512_E2271 nickel-dependent hydrogenase b-type cytochrome subunit; cytochrome B561 2760693..2761259 Escherichia coli DH1 12706194 YP_006092515.1 CDS EcDH1_2590 NC_017625.1 2761263 2761838 D PFAM: YceI family protein; KEGG: sbc:SbBS512_E2272 YceI protein; hypothetical protein 2761263..2761838 Escherichia coli DH1 12706195 YP_006092516.1 CDS EcDH1_2591 NC_017625.1 2761880 2762932 R PFAM: Rhodanese domain protein; KEGG: sfv:SFV_1078 hypothetical protein; Rhodanese domain-containing protein complement(2761880..2762932) Escherichia coli DH1 12706196 YP_006092517.1 CDS EcDH1_2592 NC_017625.1 2763157 2764077 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: sbc:SbBS512_E2276 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 2763157..2764077 Escherichia coli DH1 12706197 YP_006092518.1 CDS EcDH1_2593 NC_017625.1 2764249 2765475 D PFAM: major facilitator superfamily MFS_1; KEGG: cko:CKO_02014 drug efflux system protein MdtG; major facilitator superfamily protein 2764249..2765475 Escherichia coli DH1 12706198 YP_006092519.1 CDS EcDH1_2594 NC_017625.1 2765558 2765932 D KEGG: sdy:SDY_2299 hypothetical protein; hypothetical protein 2765558..2765932 Escherichia coli DH1 12706199 YP_006092520.1 CDS EcDH1_2595 NC_017625.1 2765933 2766160 R PFAM: protein of unknown function DUF1375; KEGG: sdy:SDY_2300 predicted lipoprotein; hypothetical protein complement(2765933..2766160) Escherichia coli DH1 12706200 YP_006092521.1 CDS EcDH1_2596 NC_017625.1 2766333 2768846 R PFAM: glycosyl transferase family 2; KEGG: ssn:SSON_1062 glucosyltransferase MdoH; family 2 glycosyl transferase complement(2766333..2768846) Escherichia coli DH1 12706201 YP_006092522.1 CDS EcDH1_2597 NC_017625.1 2768869 2770422 R PFAM: periplasmic glucan biosynthesis protein MdoG; KEGG: sbc:SbBS512_E2282 glucans biosynthesis protein G; periplasmic glucan biosynthesis protein MdoG complement(2768869..2770422) Escherichia coli DH1 12706202 YP_006092523.1 CDS EcDH1_2598 NC_017625.1 2770798 2771955 D PFAM: acyltransferase 3; KEGG: ssn:SSON_1060 glucans biosynthesis protein; acyltransferase 3 2770798..2771955 Escherichia coli DH1 12706203 YP_006092524.1 CDS EcDH1_2599 NC_017625.1 2771963 2773444 R PFAM: phospholipase D/Transphosphatidylase; KEGG: sfx:S1116 putative synthase; phospholipase D/Transphosphatidylase complement(2771963..2773444) Escherichia coli DH1 12706204 YP_006092525.1 CDS EcDH1_2600 NC_017625.1 2773386 2773919 R PFAM: Appr-1-p processing domain protein; KEGG: sbo:SBO_2021 hypothetical protein; Appr-1-p processing protein complement(2773386..2773919) Escherichia coli DH1 12706205 YP_006092526.1 CDS EcDH1_2601 NC_017625.1 2774014 2774325 R KEGG: ssn:SSON_1057 hypothetical protein; hypothetical protein complement(2774014..2774325) Escherichia coli DH1 12706206 YP_006092527.1 CDS EcDH1_2602 NC_017625.1 2774446 2774778 R KEGG: ssn:SSON_1056 putative curli production protein; putative curli production protein complement(2774446..2774778) Escherichia coli DH1 12706207 YP_006092528.1 CDS EcDH1_2603 NC_017625.1 2774837 2775292 R KEGG: sbo:SBO_2026 cryptic curlin major subunit; cryptic curlin major subunit complement(2774837..2775292) Escherichia coli DH1 12706208 YP_006092529.1 CDS EcDH1_2604 NC_017625.1 2775333 2775788 R PFAM: Curlin associated repeat protein; KEGG: sfx:S1108 curlin minor subunit; Curlin associated repeat protein complement(2775333..2775788) Escherichia coli DH1 12706209 YP_006092530.1 CDS EcDH1_2605 NC_017625.1 2776543 2777193 D PFAM: regulatory protein LuxR; KEGG: sbo:SBO_2028 DNA-binding transcriptional activator in two-component regulatory system; LuxR family transcriptional regulator 2776543..2777193 Escherichia coli DH1 12706210 YP_006092531.1 CDS EcDH1_2606 NC_017625.1 2777198 2777587 D PFAM: regulator of chromosome condensation RCC1; KEGG: ssn:SSON_1048 curli assembly protein CsgE; chromosome condensation regulator RCC1 2777198..2777587 Escherichia coli DH1 12706211 YP_006092532.1 CDS EcDH1_2607 NC_017625.1 2777612 2778028 D KEGG: ssn:SSON_1047 curli assembly protein CsgF; curli assembly protein CsgF 2777612..2778028 Escherichia coli DH1 12706212 YP_006092533.1 CDS EcDH1_2608 NC_017625.1 2778055 2778888 D PFAM: Curli production assembly/transport component CsgG; KEGG: ssn:SSON_1046 curli production assembly/transport component, 2nd curli operon; curli production assembly/transport component CsgG 2778055..2778888 Escherichia coli DH1 12706213 YP_006092534.1 CDS EcDH1_2609 NC_017625.1 2778952 2779473 R PFAM: protein of unknown function DUF1097; KEGG: sbo:SBO_2032 hypothetical protein; hypothetical protein complement(2778952..2779473) Escherichia coli DH1 12706214 YP_006092535.1 CDS EcDH1_2610 NC_017625.1 2779545 2780099 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: sfv:SFV_1046 putative oxidoreductase component; cytoplasmic chaperone TorD family protein complement(2779545..2780099) Escherichia coli DH1 12706215 YP_006092536.1 CDS EcDH1_2611 NC_017625.1 2780123 2780860 R PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sbc:SbBS512_E2295 PHP domain protein; PHP domain-containing protein complement(2780123..2780860) Escherichia coli DH1 12706216 YP_006092537.1 CDS EcDH1_2612 NC_017625.1 2780915 2781853 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: ssn:SSON_1042 putative dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein complement(2780915..2781853) Escherichia coli DH1 12706217 YP_006092538.1 CDS EcDH1_2613 NC_017625.1 2783091 2784077 R KEGG: sfv:SFV_1042 hypothetical protein; hypothetical protein complement(2783091..2784077) Escherichia coli DH1 12706219 YP_006092539.1 CDS EcDH1_2614 NC_017625.1 2784074 2784433 R KEGG: sfv:SFV_1041 hypothetical protein; (acyl-carrier-protein) S-malonyltransferase-like protein complement(2784074..2784433) Escherichia coli DH1 12706220 YP_006092540.1 CDS EcDH1_2615 NC_017625.1 2784483 2784782 D PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 2784483..2784782 Escherichia coli DH1 12706221 YP_006092541.1 CDS EcDH1_2616 NC_017625.1 2784779 2785645 D PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 2784779..2785645 Escherichia coli DH1 12706222 YP_006092542.1 CDS EcDH1_2617 NC_017625.1 2785686 2787044 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ssn:SSON_1377 hypothetical protein; diguanylate cyclase complement(2785686..2787044) Escherichia coli DH1 12706223 YP_006092543.1 CDS EcDH1_2619 NC_017625.1 2788816 2789796 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 2788816..2789796 Escherichia coli DH1 12706225 YP_006092544.1 CDS EcDH1_2620 NC_017625.1 2791262 2793280 D PFAM: polysaccharide deacetylase; KEGG: kpn:KPN_04513 putative polysaccharide deacetylase; polysaccharide deacetylase 2791262..2793280 Escherichia coli DH1 12706226 YP_006092545.1 CDS EcDH1_2621 NC_017625.1 2793273 2794598 D PFAM: glycosyl transferase family 2; KEGG: sfv:SFV_1033 N-glycosyltransferase PgaC; family 2 glycosyl transferase 2793273..2794598 Escherichia coli DH1 12706227 YP_006092546.1 CDS EcDH1_2622 NC_017625.1 2794600 2795013 D KEGG: sfv:SFV_1032 hypothetical protein; hypothetical protein 2794600..2795013 Escherichia coli DH1 12706228 YP_006092547.1 CDS EcDH1_2623 NC_017625.1 2795063 2796127 R PFAM: PhoH family protein; KEGG: sbc:SbBS512_E2301 protein PhoH; PhoH family protein complement(2795063..2796127) Escherichia coli DH1 12706229 YP_006092548.1 CDS EcDH1_2624 NC_017625.1 2796472 2797743 R TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: sbo:SBO_2039 hypothetical protein; dyp-type peroxidase family protein complement(2796472..2797743) Escherichia coli DH1 12706230 YP_006092549.1 CDS EcDH1_2625 NC_017625.1 2797749 2798876 R KEGG: ssn:SSON_1037 hypothetical protein; hypothetical protein complement(2797749..2798876) Escherichia coli DH1 12706231 YP_006092550.1 CDS EcDH1_2627 NC_017625.1 2800306 2801814 R TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: sbo:SBO_2042 major sodium/proline symporter; sodium/proline symporter complement(2800306..2801814) Escherichia coli DH1 12706233 YP_006092551.1 CDS EcDH1_2628 NC_017625.1 2802237 2806199 D TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: Proline dehydrogenase; Aldehyde Dehydrogenase; KEGG: ssn:SSON_1034 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase 2802237..2806199 Escherichia coli DH1 12706234 YP_006092552.1 CDS EcDH1_2629 NC_017625.1 2806239 2806877 R PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: sbc:SbBS512_E2305 transcriptional regulator RutR; TetR family transcriptional regulator complement(2806239..2806877) Escherichia coli DH1 12706235 YP_006092553.1 CDS EcDH1_2630 NC_017625.1 2807165 2808256 D PFAM: Luciferase-like monooxygenase; KEGG: sfv:SFV_1024 hypothetical protein; luciferase-like monooxygenase 2807165..2808256 Escherichia coli DH1 12706236 YP_006092554.1 CDS EcDH1_2631 NC_017625.1 2808253 2808948 D PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_1030 putative synthetase; isochorismatase hydrolase 2808253..2808948 Escherichia coli DH1 12706237 YP_006092555.1 CDS EcDH1_2632 NC_017625.1 2808960 2809346 D PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_0985 hypothetical protein; endoribonuclease L-PSP 2808960..2809346 Escherichia coli DH1 12706238 YP_006092556.1 CDS EcDH1_2633 NC_017625.1 2809354 2810154 D TIGRFAM: alpha/beta hydrolase; PFAM: alpha/beta hydrolase fold; KEGG: ssn:SSON_1027 putative acetyltransferase; alpha/beta hydrolase 2809354..2810154 Escherichia coli DH1 12706239 YP_006092557.1 CDS EcDH1_2634 NC_017625.1 2810164 2810754 D PFAM: nitroreductase; KEGG: sfv:SFV_1020 hypothetical protein; nitroreductase 2810164..2810754 Escherichia coli DH1 12706240 YP_006092558.1 CDS EcDH1_2635 NC_017625.1 2810765 2811259 D PFAM: flavin reductase domain protein FMN-binding; KEGG: sfv:SFV_1019 hypothetical protein; flavin reductase domain-containing FMN-binding protein 2810765..2811259 Escherichia coli DH1 12706241 YP_006092559.1 CDS EcDH1_2636 NC_017625.1 2811280 2812608 D TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_1024 putative transport protein; uracil-xanthine permease 2811280..2812608 Escherichia coli DH1 12706242 YP_006092560.1 CDS EcDH1_2637 NC_017625.1 2812865 2813038 R KEGG: cko:CKO_02046 hypothetical protein; hypothetical protein complement(2812865..2813038) Escherichia coli DH1 12706243 YP_006092561.1 CDS EcDH1_2638 NC_017625.1 2813411 2814007 D TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: sfv:SFV_1016 TrpR binding protein WrbA; flavoprotein WrbA 2813411..2814007 Escherichia coli DH1 12706244 YP_006092562.1 CDS EcDH1_2639 NC_017625.1 2814028 2814255 D KEGG: sdy:SDY_0979 hypothetical protein; hypothetical protein 2814028..2814255 Escherichia coli DH1 12706245 YP_006092563.1 CDS EcDH1_2640 NC_017625.1 2814293 2815534 R PFAM: histidine acid phosphatase; KEGG: ssn:SSON_1012 glucose-1-phosphatase/inositol phosphatase; Glucose-1-phosphatase complement(2814293..2815534) Escherichia coli DH1 12706246 YP_006092564.1 CDS EcDH1_2641 NC_017625.1 2815827 2817083 R KEGG: sfv:SFV_1013 hypothetical protein; hypothetical protein complement(2815827..2817083) Escherichia coli DH1 12706247 YP_006092565.1 CDS EcDH1_2642 NC_017625.1 2817344 2818264 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sbo:SBO_2231 curved DNA-binding protein CbpA; chaperone DnaJ domain-containing protein 2817344..2818264 Escherichia coli DH1 12706248 YP_006092566.1 CDS EcDH1_2643 NC_017625.1 2818264 2818569 D KEGG: sbc:SbBS512_E2315 chaperone-modulator protein CbpM; chaperone-modulator protein CbpM 2818264..2818569 Escherichia coli DH1 12706249 YP_006092567.1 CDS EcDH1_2644 NC_017625.1 2818721 2819320 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: sbc:SbBS512_E2316 chaperone protein TorD; cytoplasmic chaperone TorD family protein complement(2818721..2819320) Escherichia coli DH1 12706250 YP_006092568.1 CDS EcDH1_2645 NC_017625.1 2819317 2821863 R KEGG: sfv:SFV_1007 trimethylamine N-oxide reductase subunit; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductase; trimethylamine-N-oxide reductase TorA; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin guanine dinucleotide-containing S/N-oxide reductase complement(2819317..2821863) Escherichia coli DH1 12706251 YP_006092569.1 CDS EcDH1_2646 NC_017625.1 2821863 2823035 R TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; PFAM: NapC/NirT cytochrome c domain protein; KEGG: ssn:SSON_1004 trimethylamine N-oxide reductase, cytochrome c-type subunit; trimethylamine-N-oxide reductase c-type cytochrome TorC complement(2821863..2823035) Escherichia coli DH1 12706252 YP_006092570.1 CDS EcDH1_2647 NC_017625.1 2823165 2823857 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbc:SbBS512_E2320 torCAD operon transcriptional regulatory protein TorR; winged helix family two component transcriptional regulator 2823165..2823857 Escherichia coli DH1 12706253 YP_006092571.1 CDS EcDH1_2648 NC_017625.1 2823830 2824858 R TIGRFAM: TMAO reductase system periplasmic protein TorT; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_1002 periplasmic sensory protein associated with the TorRS two-component regulatory system; TMAO reductase system periplasmic protein TorT complement(2823830..2824858) Escherichia coli DH1 12706254 YP_006092572.1 CDS EcDH1_2649 NC_017625.1 2824986 2827685 D TIGRFAM: TMAO reductase sytem sensor TorS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: sbc:SbBS512_E2321 sensor histidine kinase/response regulator TorS; Hpt sensor hybrid histidine kinase 2824986..2827685 Escherichia coli DH1 12706255 YP_006092573.1 CDS EcDH1_2650 NC_017625.1 2827757 2828830 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2322 4Fe-4S binding domain protein; 4Fe-4S ferredoxin 2827757..2828830 Escherichia coli DH1 12706256 YP_006092574.1 CDS EcDH1_2651 NC_017625.1 2828879 2829052 R PFAM: GnsAGnsB family protein; KEGG: sbc:SbBS512_E2323 transcriptional regulator, GnsA/GnsB family; GnsAGnsB family protein complement(2828879..2829052) Escherichia coli DH1 12706257 YP_006092575.1 CDS EcDH1_2652 NC_017625.1 2829042 2829305 R KEGG: ssn:SSON_0998 cold shock gene; cold shock protein complement(2829042..2829305) Escherichia coli DH1 12706258 YP_006092576.1 CDS EcDH1_2653 NC_017625.1 2829446 2829658 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sbc:SbBS512_E2326 cold shock DNA-binding protein; cold-shock protein complement(2829446..2829658) Escherichia coli DH1 12706259 YP_006092577.1 CDS EcDH1_2654 NC_017625.1 2829944 2830156 D PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_0964 cold shock-like protein; cold-shock protein 2829944..2830156 Escherichia coli DH1 12706260 YP_006092578.1 CDS EcDH1_2656 NC_017625.1 2831375 2831680 D KEGG: sbc:SbBS512_E2328 putative inner membrane protein; putative inner membrane protein 2831375..2831680 Escherichia coli DH1 12706262 YP_006092579.1 CDS EcDH1_2657 NC_017625.1 2831787 2832431 D KEGG: sbc:SbBS512_E2329 group 4 capsule (G4C) polysaccharide, lipoprotein YmcC; group 4 capsule (G4C) polysaccharide, lipoprotein YmcC 2831787..2832431 Escherichia coli DH1 12706263 YP_006092580.1 CDS EcDH1_2658 NC_017625.1 2832428 2833174 D PFAM: protein of unknown function DUF1017; KEGG: ssn:SSON_0992 hypothetical protein; hypothetical protein 2832428..2833174 Escherichia coli DH1 12706264 YP_006092581.1 CDS EcDH1_2659 NC_017625.1 2833174 2835270 D PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: sbo:SBO_2246 hypothetical protein; hypothetical protein 2833174..2835270 Escherichia coli DH1 12706265 YP_006092582.1 CDS EcDH1_2660 NC_017625.1 2835316 2836455 D PFAM: polysaccharide export protein; KEGG: ssn:SSON_0990 putative function in exopolysaccharide production; polysaccharide export protein 2835316..2836455 Escherichia coli DH1 12706266 YP_006092583.1 CDS EcDH1_2661 NC_017625.1 2836443 2836889 D PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: sdy:SDY_0958 phosphotyrosine-protein phosphatase; protein tyrosine phosphatase 2836443..2836889 Escherichia coli DH1 12706267 YP_006092584.1 CDS EcDH1_2662 NC_017625.1 2836909 2839089 D KEGG: sbo:SBO_2249 cryptic autophosphorylating protein tyrosine kinase Etk; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein; capsular exopolysaccharide family protein 2836909..2839089 Escherichia coli DH1 12706268 YP_006092585.1 CDS EcDH1_2663 NC_017625.1 2839204 2840502 R PFAM: histidine acid phosphatase; KEGG: ssn:SSON_0987 phosphoanhydride phosphorylase; histidine acid phosphatase complement(2839204..2840502) Escherichia coli DH1 12706269 YP_006092586.1 CDS EcDH1_2664 NC_017625.1 2840582 2840674 R PFAM: membrane bound YbgT family protein; KEGG: sbo:SBO_2251 hypothetical protein; membrane bound YbgT family protein complement(2840582..2840674) Escherichia coli DH1 12706270 YP_006092587.1 CDS EcDH1_2665 NC_017625.1 2840687 2841823 R KEGG: ssn:SSON_0985 probable third cytochrome oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II complement(2840687..2841823) Escherichia coli DH1 12706271 YP_006092588.1 CDS EcDH1_2666 NC_017625.1 2841835 2843379 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sfv:SFV_0987 third cytochrome oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(2841835..2843379) Escherichia coli DH1 12706272 YP_006092589.1 CDS EcDH1_2667 NC_017625.1 2843513 2844370 R PFAM: HupH hydrogenase expression protein; KEGG: sbc:SbBS512_E2338 hydrogenase-1 operon protein HyaF; HupH hydrogenase expression protein complement(2843513..2844370) Escherichia coli DH1 12706273 YP_006092590.1 CDS EcDH1_2668 NC_017625.1 2844367 2844765 R PFAM: hydrogenase-1 expression HyaE; KEGG: sbc:SbBS512_E2339 hydrogenase-1 expression protein HyaE; hydrogenase-1 expression HyaE complement(2844367..2844765) Escherichia coli DH1 12706274 YP_006092591.1 CDS EcDH1_2669 NC_017625.1 2844762 2845349 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52 hydrogen uptake protein; KEGG: sdy:SDY_0950 hydrogenase 1 maturation protease; hydrogenase expression/formation protein complement(2844762..2845349) Escherichia coli DH1 12706275 YP_006092592.1 CDS EcDH1_2670 NC_017625.1 2845346 2846053 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: sdy:SDY_0949 hydrogenase 1 b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2845346..2846053) Escherichia coli DH1 12706276 YP_006092593.1 CDS EcDH1_2671 NC_017625.1 2846072 2847865 R PFAM: nickel-dependent hydrogenase large subunit; KEGG: sbo:SBO_2258 hydrogenase 1 large subunit; nickel-dependent hydrogenase large subunit complement(2846072..2847865) Escherichia coli DH1 12706277 YP_006092594.1 CDS EcDH1_2672 NC_017625.1 2847862 2848980 R KEGG: sdy:SDY_0947 hydrogenase-1 small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; hydrogenase (NiFe) small subunit HydA complement(2847862..2848980) Escherichia coli DH1 12706278 YP_006092595.1 CDS EcDH1_2673 NC_017625.1 2849701 2850360 D PFAM: protein of unknown function UPF0005; KEGG: sdy:SDY_0945 hypothetical protein; hypothetical protein 2849701..2850360 Escherichia coli DH1 12706280 YP_006092596.1 CDS EcDH1_2674 NC_017625.1 2850451 2850780 D TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: sbc:SbBS512_E2347 sulfurtransferase TusE; TusE/DsrC/DsvC family sulfur relay protein 2850451..2850780 Escherichia coli DH1 12706281 YP_006092597.1 CDS EcDH1_2675 NC_017625.1 2850777 2851055 R PFAM: acylphosphatase; KEGG: sdy:SDY_0943 hypothetical protein; acylphosphatase complement(2850777..2851055) Escherichia coli DH1 12706282 YP_006092598.1 CDS EcDH1_2676 NC_017625.1 2851165 2852340 D PFAM: Protein of unknown function methylase putative; SMART: PUA domain containing protein; KEGG: sbc:SbBS512_E2348 hypothetical protein; hypothetical protein 2851165..2852340 Escherichia coli DH1 12706283 YP_006092599.1 CDS EcDH1_2677 NC_017625.1 2852398 2852715 D TIGRFAM: hemimethylated DNA binding protein; PFAM: Hemimethylated DNA-binding region; KEGG: sbc:SbBS512_E2349 hemimethylated DNA-binding protein; hemimethylated DNA binding protein 2852398..2852715 Escherichia coli DH1 12706284 YP_006092600.1 CDS EcDH1_2678 NC_017625.1 2852760 2853173 R PFAM: CoA-binding domain protein; KEGG: sbc:SbBS512_E2350 putative CoA-binding protein; CoA-binding protein complement(2852760..2853173) Escherichia coli DH1 12706285 YP_006092601.1 CDS EcDH1_2679 NC_017625.1 2853346 2854008 D KEGG: sdy:SDY_0939 hypothetical protein; hypothetical protein 2853346..2854008 Escherichia coli DH1 12706286 YP_006092602.1 CDS EcDH1_2680 NC_017625.1 2854104 2854562 D KEGG: sdy:SDY_0938 methylglyoxal synthase; TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; methylglyoxal synthase 2854104..2854562 Escherichia coli DH1 12706287 YP_006092603.1 CDS EcDH1_2681 NC_017625.1 2854594 2856648 R PFAM: UvrD/REP helicase; KEGG: sbc:SbBS512_E2353 helicase IV; UvrD/REP helicase complement(2854594..2856648) Escherichia coli DH1 12706288 YP_006092604.1 CDS EcDH1_2682 NC_017625.1 2856771 2857217 D PFAM: protein of unknown function DUF307; KEGG: sbc:SbBS512_E2354 hypothetical protein; hypothetical protein 2856771..2857217 Escherichia coli DH1 12706289 YP_006092605.1 CDS EcDH1_2683 NC_017625.1 2857227 2859389 D TIGRFAM: hypothetical protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: ssn:SSON_0964 hypothetical protein; hypothetical protein 2857227..2859389 Escherichia coli DH1 12706290 YP_006092606.1 CDS EcDH1_2684 NC_017625.1 2859352 2859981 R PFAM: TfoX domain protein; KEGG: sdy:SDY_0934 hypothetical protein; competence-specific genes regulator complement(2859352..2859981) Escherichia coli DH1 12706291 YP_006092607.1 CDS EcDH1_2685 NC_017625.1 2860200 2860709 D PFAM: cell division inhibitor SulA; KEGG: sbc:SbBS512_E2358 cell division inhibitor SulA; cell division inhibitor SulA 2860200..2860709 Escherichia coli DH1 12706292 YP_006092608.1 CDS EcDH1_2686 NC_017625.1 2861066 2862106 D PFAM: OmpA domain protein transmembrane region-containing protein; OmpA/MotB domain protein; KEGG: sbc:SbBS512_E2359 outer membrane protein A; OmpA domain-containing protein transmembrane region-containing protein 2861066..2862106 Escherichia coli DH1 12706293 YP_006092609.1 CDS EcDH1_2687 NC_017625.1 2862182 2862634 R PFAM: protein of unknown function DUF1047; KEGG: sdy:SDY_0929 hypothetical protein; hypothetical protein complement(2862182..2862634) Escherichia coli DH1 12706294 YP_006092610.1 CDS EcDH1_2688 NC_017625.1 2862820 2864580 D KEGG: ssn:SSON_0959 putative ATP-dependent protease; putative ATP-dependent protease 2862820..2864580 Escherichia coli DH1 12706295 YP_006092611.1 CDS EcDH1_2689 NC_017625.1 2864541 2865167 D KEGG: ypp:YPDSF_1543 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 2864541..2865167 Escherichia coli DH1 12706296 YP_006092612.1 CDS EcDH1_2690 NC_017625.1 2865237 2865404 R PFAM: ribosome modulation factor; KEGG: sdy:SDY_0926 ribosome modulation factor; ribosome modulation factor complement(2865237..2865404) Escherichia coli DH1 12706297 YP_006092613.1 CDS EcDH1_2691 NC_017625.1 2865660 2866223 R PFAM: protein of unknown function DUF330; KEGG: sfv:SFV_0961 hypothetical protein; hypothetical protein complement(2865660..2866223) Escherichia coli DH1 12706298 YP_006092614.1 CDS EcDH1_2692 NC_017625.1 2866220 2867860 R PFAM: Mammalian cell entry related domain protein; KEGG: sdy:SDY_0924 paraquat-inducible protein B; Mammalian cell entry related domain-containing protein complement(2866220..2867860) Escherichia coli DH1 12706299 YP_006092615.1 CDS EcDH1_2693 NC_017625.1 2867865 2869118 R TIGRFAM: integral membrane protein, PqiA family; PFAM: Paraquat-inducible protein A; KEGG: sbo:SBO_2281 paraquat-inducible protein A; PqiA family integral membrane protein complement(2867865..2869118) Escherichia coli DH1 12706300 YP_006092616.1 CDS EcDH1_2694 NC_017625.1 2869248 2871155 R PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0953 ABC transporter ATPase component; ABC transporter complement(2869248..2871155) Escherichia coli DH1 12706301 YP_006092617.1 CDS EcDH1_2695 NC_017625.1 2871167 2873275 R PFAM: putative RNA methylase; THUMP domain protein; Protein of unknown function methylase putative; KEGG: ssn:SSON_0952 putative oxidoreductase; putative RNA methylase complement(2871167..2873275) Escherichia coli DH1 12706302 YP_006092618.1 CDS EcDH1_2696 NC_017625.1 2873519 2874628 D PFAM: ferredoxin; MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: sbc:SbBS512_E2371 MOSC domain protein; MOSC domain-containing protein 2873519..2874628 Escherichia coli DH1 12706303 YP_006092619.1 CDS EcDH1_2697 NC_017625.1 2874625 2875167 R PFAM: protein of unknown function DUF1379; KEGG: sbc:SbBS512_E2370 hypothetical protein; hypothetical protein complement(2874625..2875167) Escherichia coli DH1 12706304 YP_006092620.1 CDS EcDH1_2698 NC_017625.1 2875341 2876351 R PFAM: dihydroorotate dehydrogenase; KEGG: sbc:SbBS512_E2372 dihydroorotate oxidase; Dihydroorotate oxidase complement(2875341..2876351) Escherichia coli DH1 12706305 YP_006092621.1 CDS EcDH1_2699 NC_017625.1 2876462 2877172 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0948 hypothetical protein; Pili assembly chaperone, N-terminal complement(2876462..2877172) Escherichia coli DH1 12706306 YP_006092622.1 CDS EcDH1_2700 NC_017625.1 2877165 2877728 R PFAM: Fimbrial protein; KEGG: ssn:SSON_0947 putative fimbrial-like protein; Fimbrial protein complement(2877165..2877728) Escherichia coli DH1 12706307 YP_006092623.1 CDS EcDH1_2701 NC_017625.1 2877688 2878230 R PFAM: Fimbrial protein; KEGG: sbc:SbBS512_E2375 fimbrial protein; Fimbrial protein complement(2877688..2878230) Escherichia coli DH1 12706308 YP_006092624.1 CDS EcDH1_2702 NC_017625.1 2878242 2879312 R PFAM: Fimbrial protein; KEGG: sbc:SbBS512_E2376 putative fimbrial protein; Fimbrial protein complement(2878242..2879312) Escherichia coli DH1 12706309 YP_006092625.1 CDS EcDH1_2703 NC_017625.1 2879303 2881903 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_0949 putative outer membrane protein; fimbrial biogenesis outer membrane usher protein complement(2879303..2881903) Escherichia coli DH1 12706310 YP_006092626.1 CDS EcDH1_2704 NC_017625.1 2881928 2882629 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: ssn:SSON_0943 putative chaperone; Pili assembly chaperone, N-terminal complement(2881928..2882629) Escherichia coli DH1 12706311 YP_006092627.1 CDS EcDH1_2705 NC_017625.1 2882712 2883251 R PFAM: Fimbrial protein; KEGG: sbc:SbBS512_E2380 fimbrial protein; Fimbrial protein complement(2882712..2883251) Escherichia coli DH1 12706312 YP_006092628.1 CDS EcDH1_2706 NC_017625.1 2883607 2884182 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbc:SbBS512_E2381 NADPH-dependent FMN reductase; FMN reductase 2883607..2884182 Escherichia coli DH1 12706313 YP_006092629.1 CDS EcDH1_2707 NC_017625.1 2884175 2885134 D KEGG: sfx:S1000 alkanesulfonate transporter substrate-binding subunit; TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; aliphatic sulfonates ABC transporter substrate-binding protein 2884175..2885134 Escherichia coli DH1 12706314 YP_006092630.1 CDS EcDH1_2708 NC_017625.1 2885131 2886276 D PFAM: Luciferase-like monooxygenase; KEGG: sfx:S0999 alkanesulfonate monooxygenase; Alkanesulfonate monooxygenase 2885131..2886276 Escherichia coli DH1 12706315 YP_006092631.1 CDS EcDH1_2709 NC_017625.1 2886287 2887078 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssn:SSON_0937 alkanesulfonate transporter permease subunit; binding-protein-dependent transport system inner membrane protein 2886287..2887078 Escherichia coli DH1 12706316 YP_006092632.1 CDS EcDH1_2710 NC_017625.1 2887075 2887842 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0936 aliphatic sulfonates transport ATP-binding subunit; ABC transporter 2887075..2887842 Escherichia coli DH1 12706317 YP_006092633.1 CDS EcDH1_2711 NC_017625.1 2887885 2890497 R TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: sbc:SbBS512_E2386 aminopeptidase N; aminopeptidase N complement(2887885..2890497) Escherichia coli DH1 12706318 YP_006092634.1 CDS EcDH1_2712 NC_017625.1 2890763 2891965 D KEGG: sbo:SBO_2222 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; nicotinate phosphoribosyltransferase 2890763..2891965 Escherichia coli DH1 12706319 YP_006092635.1 CDS EcDH1_2713 NC_017625.1 2892134 2893534 D TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: sbc:SbBS512_E2388 asparaginyl-tRNA synthetase; asparaginyl-tRNA synthetase 2892134..2893534 Escherichia coli DH1 12706320 YP_006092636.1 CDS EcDH1_2714 NC_017625.1 2894137 2895225 D PFAM: porin Gram-negative type; KEGG: sbc:SbBS512_E2389 outer membrane protein F; porin 2894137..2895225 Escherichia coli DH1 12706321 YP_006092637.1 CDS EcDH1_2715 NC_017625.1 2895410 2896600 D PFAM: aminotransferase class I and II; KEGG: sdy:SDY_2329 aromatic amino acid aminotransferase; aspartate transaminase 2895410..2896600 Escherichia coli DH1 12706322 YP_006092638.1 CDS EcDH1_2716 NC_017625.1 2896822 2897469 R PFAM: beta-lactamase domain protein; KEGG: sbo:SBO_2218 hypothetical protein; beta-lactamase complement(2896822..2897469) Escherichia coli DH1 12706323 YP_006092639.1 CDS EcDH1_2717 NC_017625.1 2897496 2898044 R PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: sdy:SDY_2331 hypothetical protein; hypothetical protein complement(2897496..2898044) Escherichia coli DH1 12706324 YP_006092640.1 CDS EcDH1_2718 NC_017625.1 2898225 2900072 R PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: sbo:SBO_2216 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(2898225..2900072) Escherichia coli DH1 12706325 YP_006092641.1 CDS EcDH1_2719 NC_017625.1 2900333 2904793 R PFAM: chromosome segregation and condensation protein MukB domain protein; KEGG: sbc:SbBS512_E2400 chromosome partition protein MukB; chromosome segregation and condensation protein MukB domain protein complement(2900333..2904793) Escherichia coli DH1 12706326 YP_006092642.1 CDS EcDH1_2720 NC_017625.1 2904793 2905497 R PFAM: chromosome segregation and condensation protein MukE; KEGG: sbc:SbBS512_E2401 chromosome partition protein MukE; chromosome segregation and condensation protein MukE complement(2904793..2905497) Escherichia coli DH1 12706327 YP_006092643.1 CDS EcDH1_2721 NC_017625.1 2905478 2906800 R PFAM: chromosome segregation and condensation protein MukF; KEGG: sdy:SDY_2336 condesin subunit F; chromosome segregation and condensation protein MukF complement(2905478..2906800) Escherichia coli DH1 12706328 YP_006092644.1 CDS EcDH1_2722 NC_017625.1 2906797 2907582 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_2337 putative metallothionein SmtA; type 11 methyltransferase complement(2906797..2907582) Escherichia coli DH1 12706329 YP_006092645.1 CDS EcDH1_2723 NC_017625.1 2907718 2908497 D PFAM: protein of unknown function DUF218; KEGG: sfv:SFV_0921 hypothetical protein; hypothetical protein 2907718..2908497 Escherichia coli DH1 12706330 YP_006092646.1 CDS EcDH1_2724 NC_017625.1 2908474 2909367 R KEGG: sbc:SbBS512_E2404 hypothetical protein; hypothetical protein complement(2908474..2909367) Escherichia coli DH1 12706331 YP_006092647.1 CDS EcDH1_2725 NC_017625.1 2909521 2910267 R TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; KEGG: sbc:SbBS512_E2406 3-deoxy-D-manno-octulosonate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(2909521..2910267) Escherichia coli DH1 12706332 YP_006092648.1 CDS EcDH1_2726 NC_017625.1 2910264 2910446 R PFAM: protein of unknown function DUF343; KEGG: sdy:SDY_2341 hypothetical protein; hypothetical protein complement(2910264..2910446) Escherichia coli DH1 12706333 YP_006092649.1 CDS EcDH1_2727 NC_017625.1 2910498 2911730 R PFAM: protein of unknown function DUF1006; KEGG: sdy:SDY_2342 hypothetical protein; hypothetical protein complement(2910498..2911730) Escherichia coli DH1 12706334 YP_006092650.1 CDS EcDH1_2728 NC_017625.1 2911767 2912753 R KEGG: ssn:SSON_0917 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(2911767..2912753) Escherichia coli DH1 12706335 YP_006092651.1 CDS EcDH1_2729 NC_017625.1 2912750 2914498 R KEGG: sdy:SDY_2344 lipid transporter ATP-binding/permease protein; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA complement(2912750..2914498) Escherichia coli DH1 12706336 YP_006092652.1 CDS EcDH1_2730 NC_017625.1 2914535 2916799 R TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: sdy:SDY_2345 hypothetical protein; DNA internalization-related competence protein ComEC/Rec2 complement(2914535..2916799) Escherichia coli DH1 12706337 YP_006092653.1 CDS EcDH1_2731 NC_017625.1 2917007 2917291 R TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_2346 integration host factor subunit beta; integration host factor subunit beta complement(2917007..2917291) Escherichia coli DH1 12706338 YP_006092654.1 CDS EcDH1_2732 NC_017625.1 2917451 2919124 R TIGRFAM: ribosomal protein S1; PFAM: RNA binding S1 domain protein; KEGG: sbc:SbBS512_E2417 ribosomal protein S1; 30S ribosomal protein S1 complement(2917451..2919124) Escherichia coli DH1 12706339 YP_006092655.1 CDS EcDH1_2733 NC_017625.1 2919235 2919918 R KEGG: sbc:SbBS512_E2418 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase complement(2919235..2919918) Escherichia coli DH1 12706340 YP_006092656.1 CDS EcDH1_2734 NC_017625.1 2920091 2920855 R PFAM: peptidase M48 Ste24p; KEGG: ssn:SSON_0911 putative heat shock protein; peptidase M48 Ste24p complement(2920091..2920855) Escherichia coli DH1 12706341 YP_006092657.1 CDS EcDH1_2735 NC_017625.1 2921024 2922307 R TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: sbc:SbBS512_E2420 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2921024..2922307) Escherichia coli DH1 12706342 YP_006092658.1 CDS EcDH1_2736 NC_017625.1 2922378 2923466 R KEGG: ssn:SSON_0908 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V; phosphoserine aminotransferase complement(2922378..2923466) Escherichia coli DH1 12706343 YP_006092659.1 CDS EcDH1_2737 NC_017625.1 2923665 2924357 R PFAM: protein of unknown function DUF421; KEGG: sbc:SbBS512_E2422 hypothetical protein; hypothetical protein complement(2923665..2924357) Escherichia coli DH1 12706344 YP_006092660.1 CDS EcDH1_2738 NC_017625.1 2924487 2926247 D PFAM: protein of unknown function DUF181; KEGG: sbo:SBO_2191 hypothetical protein; hypothetical protein 2924487..2926247 Escherichia coli DH1 12706345 YP_006092661.1 CDS EcDH1_2739 NC_017625.1 2926653 2927510 D PFAM: formate/nitrite transporter; KEGG: sdy:SDY_2357 formate transporter; formate/nitrite transporter 2926653..2927510 Escherichia coli DH1 12706346 YP_006092662.1 CDS EcDH1_2740 NC_017625.1 2927565 2929847 D KEGG: ssn:SSON_0904 formate acetyltransferase 1; TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; formate acetyltransferase 2927565..2929847 Escherichia coli DH1 12706347 YP_006092663.1 CDS EcDH1_2741 NC_017625.1 2930039 2930779 D KEGG: sdy:SDY_2359 pyruvate formate lyase-activating enzyme 1; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; pyruvate formate-lyase activating enzyme 2930039..2930779 Escherichia coli DH1 12706348 YP_006092664.1 CDS EcDH1_2742 NC_017625.1 2930861 2931451 R PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: sbo:SBO_2185 hypothetical protein; NAD(P)H dehydrogenase (quinone) complement(2930861..2931451) Escherichia coli DH1 12706349 YP_006092665.1 CDS EcDH1_2743 NC_017625.1 2931551 2932459 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_2184 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 2931551..2932459 Escherichia coli DH1 12706350 YP_006092666.1 CDS EcDH1_2744 NC_017625.1 2932460 2933890 R PFAM: amino acid permease-associated region; KEGG: sea:SeAg_B0973 inner membrane transporter YcaM; amino acid permease complement(2932460..2933890) Escherichia coli DH1 12706351 YP_006092667.1 CDS EcDH1_2745 NC_017625.1 2934100 2935248 R PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_2363 putative MFS family transporter protein; major facilitator superfamily protein complement(2934100..2935248) Escherichia coli DH1 12706352 YP_006092668.1 CDS EcDH1_2746 NC_017625.1 2935562 2936188 D PFAM: isochorismatase hydrolase; KEGG: ssn:SSON_0898 hypothetical protein; isochorismatase hydrolase 2935562..2936188 Escherichia coli DH1 12706353 YP_006092669.1 CDS EcDH1_2747 NC_017625.1 2936223 2937086 R PFAM: DMSO reductase anchor subunit (DmsC); KEGG: sbc:SbBS512_E2432 anaerobic dimethyl sulfoxide reductase, C subunit; DMSO reductase anchor subunit DmsC complement(2936223..2937086) Escherichia coli DH1 12706354 YP_006092670.1 CDS EcDH1_2748 NC_017625.1 2937088 2937705 R TIGRFAM: dimethylsulfoxide reductase, chain B; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbc:SbBS512_E2433 dimethylsulfoxide reductase, B subunit; dimethylsulfoxide reductase subunit B complement(2937088..2937705) Escherichia coli DH1 12706355 YP_006092671.1 CDS EcDH1_2749 NC_017625.1 2937716 2940160 R TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ssn:SSON_0895 anaerobic dimethyl sulfoxide reductase subunit A; anaerobic dimethyl sulfoxide reductase subunit A complement(2937716..2940160) Escherichia coli DH1 12706356 YP_006092672.1 CDS EcDH1_2750 NC_017625.1 2940399 2941691 R KEGG: sbo:SBO_0826 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl-tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(2940399..2941691) Escherichia coli DH1 12706357 YP_006092673.1 CDS EcDH1_2751 NC_017625.1 2941782 2943125 R PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sdy:SDY_2369 recombination factor protein RarA; AAA ATPase complement(2941782..2943125) Escherichia coli DH1 12706358 YP_006092674.1 CDS EcDH1_2752 NC_017625.1 2943136 2943747 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: sdy:SDY_2370 outer-membrane lipoprotein carrier protein; outer membrane lipoprotein carrier protein LolA complement(2943136..2943747) Escherichia coli DH1 12706359 YP_006092675.1 CDS EcDH1_2753 NC_017625.1 2943906 2947895 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: sfl:SF0849 DNA translocase FtsK; cell division protein FtsK complement(2943906..2947895) Escherichia coli DH1 12706360 YP_006092676.1 CDS EcDH1_2754 NC_017625.1 2948030 2948524 R PFAM: regulatory protein AsnC/Lrp family; KEGG: ent:Ent638_1413 leucine-responsive transcriptional regulator; AsnC family transcriptional regulator complement(2948030..2948524) Escherichia coli DH1 12706361 YP_006092677.1 CDS EcDH1_2755 NC_017625.1 2949069 2950034 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sdy:SDY_2373 thioredoxin reductase; thioredoxin reductase 2949069..2950034 Escherichia coli DH1 12706362 YP_006092678.1 CDS EcDH1_2756 NC_017625.1 2950157 2951923 D KEGG: sdy:SDY_2374 cysteine/glutathione ABC transporter membrane/ATP-binding component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 2950157..2951923 Escherichia coli DH1 12706363 YP_006092679.1 CDS EcDH1_2757 NC_017625.1 2951924 2953645 D KEGG: ssn:SSON_0887 cysteine/glutathione ABC transporter membrane/ATP-binding component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; cysteine ABC transporter ATP-binding protein/permease 2951924..2953645 Escherichia coli DH1 12706364 YP_006092680.1 CDS EcDH1_2758 NC_017625.1 2953687 2954391 D KEGG: sbc:SbBS512_E2444 leucyl/phenylalanyl-tRNA--protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase 2953687..2954391 Escherichia coli DH1 12706365 YP_006092681.1 CDS EcDH1_2759 NC_017625.1 2954676 2954894 D KEGG: cko:CKO_02188 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 2954676..2954894 Escherichia coli DH1 12706366 YP_006092682.1 CDS EcDH1_2760 NC_017625.1 2955579 2957855 R KEGG: ssn:SSON_0883 ATP-dependent Clp protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; ATP-dependent Clp protease ATP-binding subunit clpA; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA complement(2955579..2957855) Escherichia coli DH1 12706368 YP_006092683.1 CDS EcDH1_2761 NC_017625.1 2957886 2958206 R PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: sdy:SDY_2380 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS complement(2957886..2958206) Escherichia coli DH1 12706369 YP_006092684.1 CDS EcDH1_2762 NC_017625.1 2958529 2958753 D KEGG: sdy:SDY_2381 stationary phase/starvation inducible regulatory protein CspD; TIGRFAM: cold shock domain protein CspD; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; cold-shock protein 2958529..2958753 Escherichia coli DH1 12706370 YP_006092685.1 CDS EcDH1_2763 NC_017625.1 2958826 2960772 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2450 macrolide-specific ABC-type efflux carrier protein MacB; ABC transporter complement(2958826..2960772) Escherichia coli DH1 12706371 YP_006092686.1 CDS EcDH1_2764 NC_017625.1 2960769 2961884 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E2451 macrolide-specific efflux protein MacA; RND family efflux transporter MFP subunit complement(2960769..2961884) Escherichia coli DH1 12706372 YP_006092687.1 CDS EcDH1_2765 NC_017625.1 2961999 2962991 D PFAM: protein of unknown function DUF535; KEGG: sbc:SbBS512_E2453 hypothetical protein; hypothetical protein 2961999..2962991 Escherichia coli DH1 12706373 YP_006092688.1 CDS EcDH1_2766 NC_017625.1 2962988 2964646 R KEGG: sfx:S0876 hypothetical protein; hypothetical protein complement(2962988..2964646) Escherichia coli DH1 12706374 YP_006092689.1 CDS EcDH1_2767 NC_017625.1 2965072 2965767 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sfv:SFV_0863 aquaporin Z; MIP family channel protein 2965072..2965767 Escherichia coli DH1 12706375 YP_006092690.1 CDS EcDH1_2768 NC_017625.1 2966262 2967161 D PFAM: protein of unknown function DUF340 membrane; KEGG: sbo:SBO_0807 putative surface protein; hypothetical protein 2966262..2967161 Escherichia coli DH1 12706376 YP_006092691.1 CDS EcDH1_2769 NC_017625.1 2967305 2968957 D TIGRFAM: hybrid cluster protein; PFAM: Prismane; KEGG: ssn:SSON_0859 hydroxylamine reductase; hybrid cluster protein 2967305..2968957 Escherichia coli DH1 12706377 YP_006092692.1 CDS EcDH1_2770 NC_017625.1 2968969 2969937 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sbc:SbBS512_E2459 NADH oxidoreductase hcr; ferredoxin 2968969..2969937 Escherichia coli DH1 12706378 YP_006092693.1 CDS EcDH1_2771 NC_017625.1 2970070 2971788 D PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sbc:SbBS512_E2460 pyruvate dehydrogenase (cytochrome); thiamine pyrophosphate TPP binding domain-containing protein 2970070..2971788 Escherichia coli DH1 12706379 YP_006092694.1 CDS EcDH1_2772 NC_017625.1 2971825 2972826 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: sfv:SFV_0858 L-threonine aldolase; threonine aldolase 2971825..2972826 Escherichia coli DH1 12706380 YP_006092695.1 CDS EcDH1_2773 NC_017625.1 2972837 2974267 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: sbc:SbBS512_E2462 NAD dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2972837..2974267 Escherichia coli DH1 12706381 YP_006092696.1 CDS EcDH1_2774 NC_017625.1 2974330 2975379 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KEGG: ssn:SSON_0854 putative nucleotide di-P-sugar epimerase or dehydratase; NAD-dependent epimerase/dehydratase 2974330..2975379 Escherichia coli DH1 12706382 YP_006092697.1 CDS EcDH1_2775 NC_017625.1 2975376 2976206 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sbc:SbBS512_E2463 N-acetylmuramoyl-L-alanine amidase AmiD; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(2975376..2976206) Escherichia coli DH1 12706383 YP_006092698.1 CDS EcDH1_2776 NC_017625.1 2976203 2976526 R PFAM: protein of unknown function DUF74; KEGG: sdy:SDY_2397 hypothetical protein; hypothetical protein complement(2976203..2976526) Escherichia coli DH1 12706384 YP_006092699.1 CDS EcDH1_2777 NC_017625.1 2976652 2977167 D KEGG: sbc:SbBS512_E2466 putative lipoprotein; putative lipoprotein 2976652..2977167 Escherichia coli DH1 12706385 YP_006092700.1 CDS EcDH1_2778 NC_017625.1 2977385 2978113 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_2404 arginine transporter ATP-binding subunit; ABC transporter 2977385..2978113 Escherichia coli DH1 12706386 YP_006092701.1 CDS EcDH1_2779 NC_017625.1 2978131 2978862 D KEGG: sbc:SbBS512_E2468 arginine ABC transporter, periplasmic arginine-binding protein ArtI; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 2978131..2978862 Escherichia coli DH1 12706387 YP_006092702.1 CDS EcDH1_2780 NC_017625.1 2978869 2979585 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_0796 arginine transporter permease subunit ArtQ; polar amino acid ABC transporter inner membrane subunit 2978869..2979585 Escherichia coli DH1 12706388 YP_006092703.1 CDS EcDH1_2781 NC_017625.1 2979585 2980253 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2470 arginine ABC transporter, permease protein ArtM; polar amino acid ABC transporter inner membrane subunit 2979585..2980253 Escherichia coli DH1 12706389 YP_006092704.1 CDS EcDH1_2782 NC_017625.1 2980544 2981275 D KEGG: sbo:SBO_0794 arginine 3rd transport system periplasmic binding protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 2980544..2981275 Escherichia coli DH1 12706390 YP_006092705.1 CDS EcDH1_2783 NC_017625.1 2981474 2982601 R TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumB; PFAM: (Uracil-5)-methyltransferase; KEGG: ssn:SSON_0844 23S rRNA metyluridine methyltransferase; 23S rRNA (uracil-5-)-methyltransferase RumB complement(2981474..2982601) Escherichia coli DH1 12706391 YP_006092706.1 CDS EcDH1_2784 NC_017625.1 2982642 2983130 R KEGG: sdy:SDY_0737 hypothetical protein; hypothetical protein complement(2982642..2983130) Escherichia coli DH1 12706392 YP_006092707.1 CDS EcDH1_2785 NC_017625.1 2983190 2984035 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0738 putrescine transporter subunit: membrane component of ABC superfamily; ornithine carbamoyltransferase complement(2983190..2984035) Escherichia coli DH1 12706393 YP_006092708.1 CDS EcDH1_2786 NC_017625.1 2984032 2984985 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S0852 putrescine ABC transporter membrane protein; binding-protein-dependent transport system inner membrane protein complement(2984032..2984985) Escherichia coli DH1 12706394 YP_006092709.1 CDS EcDH1_2787 NC_017625.1 2984995 2986128 R KEGG: sfx:S0851 putrescine transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(2984995..2986128) Escherichia coli DH1 12706395 YP_006092710.1 CDS EcDH1_2788 NC_017625.1 2986223 2987335 R PFAM: extracellular solute-binding protein family 1; KEGG: sbc:SbBS512_E2477 putrescine ABC transporter, periplasmic putrescine-binding protein; extracellular solute-binding protein complement(2986223..2987335) Escherichia coli DH1 12706396 YP_006092711.1 CDS EcDH1_2789 NC_017625.1 2987686 2988162 R KEGG: sbc:SbBS512_E2479 tetratricopeptide repeat protein; hypothetical protein complement(2987686..2988162) Escherichia coli DH1 12706397 YP_006092712.1 CDS EcDH1_2790 NC_017625.1 2988250 2989152 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: sdy:SDY_0743 ribosomal protein S6 modification protein; alpha-L-glutamate ligase complement(2988250..2989152) Escherichia coli DH1 12706398 YP_006092713.1 CDS EcDH1_2791 NC_017625.1 2989213 2989935 R PFAM: nitroreductase; KEGG: sdy:SDY_0744 nitroreductase A; nitroreductase complement(2989213..2989935) Escherichia coli DH1 12706399 YP_006092714.1 CDS EcDH1_2792 NC_017625.1 2989919 2990206 R PFAM: protein of unknown function DUF1418; KEGG: sbc:SbBS512_E2482 hypothetical protein; hypothetical protein complement(2989919..2990206) Escherichia coli DH1 12706400 YP_006092715.1 CDS EcDH1_2793 NC_017625.1 2990366 2990623 D TIGRFAM: glutaredoxin, GrxA family; PFAM: glutaredoxin; KEGG: sbo:SBO_0783 glutaredoxin 1; GrxA family glutaredoxin 2990366..2990623 Escherichia coli DH1 12706401 YP_006092716.1 CDS EcDH1_2794 NC_017625.1 2990653 2991030 R KEGG: sdy:SDY_0747 hypothetical protein; hypothetical protein complement(2990653..2991030) Escherichia coli DH1 12706402 YP_006092717.1 CDS EcDH1_2795 NC_017625.1 2991300 2992985 D TIGRFAM: YidE/YbjL duplication; PFAM: TrkA-C domain protein; YidE/YbjL duplication domain protein; KEGG: sbc:SbBS512_E2485 putative transporter; YidE/YbjL duplication 2991300..2992985 Escherichia coli DH1 12706403 YP_006092718.1 CDS EcDH1_2796 NC_017625.1 2993160 2993696 R PFAM: regulatory protein TetR; KEGG: sbc:SbBS512_E2499 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2993160..2993696) Escherichia coli DH1 12706404 YP_006092719.1 CDS EcDH1_2797 NC_017625.1 2993780 2994988 D PFAM: major facilitator superfamily MFS_1; KEGG: sbo:SBO_0741 putative DeoR-type transcriptional regulator; major facilitator superfamily protein 2993780..2994988 Escherichia coli DH1 12706405 YP_006092720.1 CDS EcDH1_2798 NC_017625.1 2994988 2995803 D KEGG: sfv:SFV_0829 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 2994988..2995803 Escherichia coli DH1 12706406 YP_006092721.1 CDS EcDH1_2799 NC_017625.1 2995895 2996173 D KEGG: sfv:SFV_0828 hypothetical protein; hypothetical protein 2995895..2996173 Escherichia coli DH1 12706407 YP_006092722.1 CDS EcDH1_2800 NC_017625.1 2996214 2997446 R PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0838 chloramphenicol resistance pump Cmr; major facilitator superfamily protein complement(2996214..2997446) Escherichia coli DH1 12706408 YP_006092723.1 CDS EcDH1_2801 NC_017625.1 2997731 2998327 D PFAM: phosphoesterase PA-phosphatase related; KEGG: ssn:SSON_0826 undecaprenyl pyrophosphate phosphatase; undecaprenyl-diphosphatase 2997731..2998327 Escherichia coli DH1 12706409 YP_006092724.1 CDS EcDH1_2802 NC_017625.1 2998385 2999143 D PFAM: regulatory protein DeoR; KEGG: sfv:SFV_0825 DNA-binding transcriptional repressor DeoR; DeoR family transcriptional regulator 2998385..2999143 Escherichia coli DH1 12706410 YP_006092725.1 CDS EcDH1_2803 NC_017625.1 2999190 3000392 R PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sbc:SbBS512_E2506 serine-type D-Ala-D-Ala carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(2999190..3000392) Escherichia coli DH1 12706411 YP_006092726.1 CDS EcDH1_2804 NC_017625.1 3000639 3001265 D PFAM: Glutathione S-transferase domain; KEGG: sfx:S0831 putative transferase; glutathione S-transferase 3000639..3001265 Escherichia coli DH1 12706412 YP_006092727.1 CDS EcDH1_2805 NC_017625.1 3001262 3002377 R PFAM: glucose sorbosone dehydrogenase; KEGG: sbo:SBO_0733 putative dehydrogenase; glucose sorbosone dehydrogenase complement(3001262..3002377) Escherichia coli DH1 12706413 YP_006092728.1 CDS EcDH1_2806 NC_017625.1 3002488 3002871 R KEGG: sbc:SbBS512_E2509 biofilm regulator BssR; biofilm regulator BssR complement(3002488..3002871) Escherichia coli DH1 12706414 YP_006092729.1 CDS EcDH1_2807 NC_017625.1 3003084 3004409 D KEGG: sbo:SBO_0727 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 3003084..3004409 Escherichia coli DH1 12706415 YP_006092730.1 CDS EcDH1_2808 NC_017625.1 3004456 3005784 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sbo:SBO_0726 hypothetical protein; diguanylate cyclase complement(3004456..3005784) Escherichia coli DH1 12706416 YP_006092731.1 CDS EcDH1_2809 NC_017625.1 3005792 3008140 R PFAM: EAL domain protein; KEGG: sfv:SFV_0816 hypothetical protein; diguanylate phosphodiesterase complement(3005792..3008140) Escherichia coli DH1 12706417 YP_006092732.1 CDS EcDH1_2810 NC_017625.1 3008318 3009229 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E2516 glutathione ABC transporter, permease protein GsiD; binding-protein-dependent transport system inner membrane protein complement(3008318..3009229) Escherichia coli DH1 12706418 YP_006092733.1 CDS EcDH1_2811 NC_017625.1 3009232 3010152 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0756 putative transport system permease protein; binding-protein-dependent transport system inner membrane protein complement(3009232..3010152) Escherichia coli DH1 12706419 YP_006092734.1 CDS EcDH1_2812 NC_017625.1 3010170 3011708 R PFAM: extracellular solute-binding protein family 5; KEGG: ssn:SSON_0812 putative transport protein; family 5 extracellular solute-binding protein complement(3010170..3011708) Escherichia coli DH1 12706420 YP_006092735.1 CDS EcDH1_2813 NC_017625.1 3011728 3013599 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2519 glutathione ABC transporter, ATP-binding protein GsiA; ABC transporter complement(3011728..3013599) Escherichia coli DH1 12706421 YP_006092736.1 CDS EcDH1_2814 NC_017625.1 3013586 3014551 R PFAM: peptidase T2 asparaginase 2; KEGG: ssn:SSON_0810 L-asparaginase; peptidase T2 asparaginase 2 complement(3013586..3014551) Escherichia coli DH1 12706422 YP_006092737.1 CDS EcDH1_2815 NC_017625.1 3014755 3015990 D TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: sbc:SbBS512_E2521 molybdopterin biosynthesis protein MoeA; molybdenum cofactor synthesis domain-containing protein 3014755..3015990 Escherichia coli DH1 12706423 YP_006092738.1 CDS EcDH1_2816 NC_017625.1 3015990 3016739 D TIGRFAM: molybdopterin synthase sulfurylase MoeB; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sbc:SbBS512_E2522 molybdopterin synthase sulfurylase MoeB; molybdopterin synthase sulfurylase MoeB 3015990..3016739 Escherichia coli DH1 12706424 YP_006092739.1 CDS EcDH1_2817 NC_017625.1 3016815 3017477 R KEGG: sfx:S0818 fructose-6-phosphate aldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase complement(3016815..3017477) Escherichia coli DH1 12706425 YP_006092740.1 CDS EcDH1_2818 NC_017625.1 3017608 3018507 D KEGG: ssn:SSON_0806 putative pyruvate formate-lyase 2 activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family 3017608..3018507 Escherichia coli DH1 12706426 YP_006092741.1 CDS EcDH1_2819 NC_017625.1 3018513 3020945 D KEGG: ssn:SSON_0805 putative formate acetyltransferase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase 3018513..3020945 Escherichia coli DH1 12706427 YP_006092742.1 CDS EcDH1_2820 NC_017625.1 3021091 3021906 D KEGG: sfv:SFV_0805 hypothetical protein; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; cof family hydrolase 3021091..3021906 Escherichia coli DH1 12706428 YP_006092743.1 CDS EcDH1_2821 NC_017625.1 3022058 3023323 D PFAM: protein of unknown function DUF1479; KEGG: sbo:SBO_0711 hypothetical protein; hypothetical protein 3022058..3023323 Escherichia coli DH1 12706429 YP_006092744.1 CDS EcDH1_2822 NC_017625.1 3023564 3025156 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2528 ABC transporter, ATP-binding protein; ABC transporter complement(3023564..3025156) Escherichia coli DH1 12706430 YP_006092745.1 CDS EcDH1_2823 NC_017625.1 3025375 3026295 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0777 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3025375..3026295 Escherichia coli DH1 12706431 YP_006092746.1 CDS EcDH1_2824 NC_017625.1 3026354 3027472 R PFAM: Citrate transporter; KEGG: ssn:SSON_0797 hypothetical protein; citrate transporter complement(3026354..3027472) Escherichia coli DH1 12706432 YP_006092747.1 CDS EcDH1_2825 NC_017625.1 3027469 3027936 R PFAM: regulatory protein MarR; iron dependent repressor; KEGG: sbc:SbBS512_E2531 transcriptional regulator MntR; DtxR family iron (metal) dependent repressor complement(3027469..3027936) Escherichia coli DH1 12706433 YP_006092748.1 CDS EcDH1_2826 NC_017625.1 3028122 3028250 D KEGG: sbc:SbBS512_E2532 hypothetical protein; hypothetical protein 3028122..3028250 Escherichia coli DH1 12706434 YP_006092749.1 CDS EcDH1_2827 NC_017625.1 3028522 3030105 D PFAM: sulfatase; KEGG: sbc:SbBS512_E2533 sulfatase family protein; sulfatase 3028522..3030105 Escherichia coli DH1 12706435 YP_006092750.1 CDS EcDH1_2828 NC_017625.1 3030154 3030669 R PFAM: virulence-related outer membrane protein; KEGG: sdy:SDY_0781 outer membrane protein X; virulence-related outer membrane protein complement(3030154..3030669) Escherichia coli DH1 12706436 YP_006092751.1 CDS EcDH1_2829 NC_017625.1 3031022 3031909 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: sbc:SbBS512_E2535 threonine/homoserine efflux transporter RhtA; hypothetical protein 3031022..3031909 Escherichia coli DH1 12706437 YP_006092752.1 CDS EcDH1_2830 NC_017625.1 3032208 3032711 D PFAM: Ferritin Dps family protein; KEGG: sdy:SDY_0783 DNA starvation/stationary phase protection protein Dps; ferritin Dps family protein 3032208..3032711 Escherichia coli DH1 12706438 YP_006092753.1 CDS EcDH1_2831 NC_017625.1 3033115 3033861 D KEGG: sbo:SBO_0702 glutamine ABC transporter periplasmic protein; TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; cationic amino acid ABC transporter substrate-binding protein 3033115..3033861 Escherichia coli DH1 12706439 YP_006092754.1 CDS EcDH1_2832 NC_017625.1 3034000 3034659 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0786 glutamine ABC transporter permease protein; polar amino acid ABC transporter inner membrane subunit 3034000..3034659 Escherichia coli DH1 12706440 YP_006092755.1 CDS EcDH1_2833 NC_017625.1 3034656 3035378 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E2539 glutamine ABC transporter, ATP-binding protein; ABC transporter 3034656..3035378 Escherichia coli DH1 12706441 YP_006092756.1 CDS EcDH1_2834 NC_017625.1 3035639 3037864 D PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0788 predicted mechanosensitive channel; mechanosensitive ion channel protein MscS 3035639..3037864 Escherichia coli DH1 12706442 YP_006092757.1 CDS EcDH1_2835 NC_017625.1 3037861 3038787 R PFAM: protein of unknown function DUF890; KEGG: sbc:SbBS512_E2543 hypothetical protein; hypothetical protein complement(3037861..3038787) Escherichia coli DH1 12706443 YP_006092758.1 CDS EcDH1_2836 NC_017625.1 3039063 3039323 D PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E2544 hypothetical protein; hypothetical protein 3039063..3039323 Escherichia coli DH1 12706444 YP_006092759.1 CDS EcDH1_2837 NC_017625.1 3039588 3041870 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpe:KPK_3191 catecholate siderophore receptor Fiu; TonB-dependent siderophore receptor 3039588..3041870 Escherichia coli DH1 12706445 YP_006092760.1 CDS EcDH1_2838 NC_017625.1 3041912 3042589 D PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; KEGG: sbo:SBO_0692 putative hydroxylase; 2OG-Fe(II) oxygenase 3041912..3042589 Escherichia coli DH1 12706446 YP_006092761.1 CDS EcDH1_2839 NC_017625.1 3042663 3042929 D PFAM: zinc finger DksA/TraR C4-type; KEGG: ssn:SSON_0782 hypothetical protein; TraR/DksA family transcriptional regulator 3042663..3042929 Escherichia coli DH1 12706447 YP_006092762.1 CDS EcDH1_2840 NC_017625.1 3043194 3043454 D PFAM: protein of unknown function DUF1471; KEGG: sfv:SFV_0785 hypothetical protein; hypothetical protein 3043194..3043454 Escherichia coli DH1 12706448 YP_006092763.1 CDS EcDH1_2841 NC_017625.1 3043683 3044768 R PFAM: Malate/L-lactate dehydrogenase; KEGG: ssn:SSON_0780 putative dehydrogenase; malate/L-lactate dehydrogenase complement(3043683..3044768) Escherichia coli DH1 12706449 YP_006092764.1 CDS EcDH1_2842 NC_017625.1 3044909 3045871 R PFAM: Glycosyl transferase, family 3-like; KEGG: sbo:SBO_0688 hypothetical protein; glycosyl transferase family protein complement(3044909..3045871) Escherichia coli DH1 12706450 YP_006092765.1 CDS EcDH1_2843 NC_017625.1 3045899 3048049 R SMART: helicase c2; DEAD-like helicases; KEGG: sbo:SBO_0687 ATP-dependent DNA helicase DinG; helicase c2 complement(3045899..3048049) Escherichia coli DH1 12706451 YP_006092766.1 CDS EcDH1_2844 NC_017625.1 3048202 3048651 D PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E2554 hypothetical protein; hypothetical protein 3048202..3048651 Escherichia coli DH1 12706452 YP_006092767.1 CDS EcDH1_2845 NC_017625.1 3048883 3050247 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: sbc:SbBS512_E2555 putative ATP-dependent RNA helicase RhlE; DEAD/DEAH box helicase complement(3048883..3050247) Escherichia coli DH1 12706453 YP_006092768.1 CDS EcDH1_2846 NC_017625.1 3050476 3051147 D PFAM: regulatory protein TetR; Transcriptional regulator TetR; KEGG: sdy:SDY_0807 putative DNA-binding transcriptional regulator; TetR family transcriptional regulator 3050476..3051147 Escherichia coli DH1 12706454 YP_006092769.1 CDS EcDH1_2847 NC_017625.1 3051150 3052145 D PFAM: secretion protein HlyD family protein; KEGG: grail3.0617000101; . ; K01993 HlyD family secretion protein; secretion protein HlyD family protein 3051150..3052145 Escherichia coli DH1 12706455 YP_006092770.1 CDS EcDH1_2848 NC_017625.1 3052138 3053874 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfl:SF0744 putative ATP-binding component of a transport system; ABC transporter 3052138..3053874 Escherichia coli DH1 12706456 YP_006092771.1 CDS EcDH1_2849 NC_017625.1 3053867 3055000 D PFAM: ABC-2 type transporter; KEGG: ssn:SSON_0772 hypothetical protein; ABC transporter 3053867..3055000 Escherichia coli DH1 12706457 YP_006092772.1 CDS EcDH1_2850 NC_017625.1 3055011 3056117 D PFAM: ABC-2 type transporter; KEGG: sbc:SbBS512_E2561 ABC-2 type transporter, permease protein; ABC transporter 3055011..3056117 Escherichia coli DH1 12706458 YP_006092773.1 CDS EcDH1_2851 NC_017625.1 3056079 3056489 R KEGG: sbc:SbBS512_E2560 hypothetical protein; hypothetical protein complement(3056079..3056489) Escherichia coli DH1 12706459 YP_006092774.1 CDS EcDH1_2852 NC_017625.1 3056622 3057383 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ssn:SSON_0769 hypothetical protein; endonuclease/exonuclease/phosphatase 3056622..3057383 Escherichia coli DH1 12706460 YP_006092775.1 CDS EcDH1_2853 NC_017625.1 3057380 3058621 D KEGG: fgenesh3_pg.C_scaffold_3992000001; K06132 putative cardiolipin synthase; hypothetical protein 3057380..3058621 Escherichia coli DH1 12706461 YP_006092776.1 CDS EcDH1_2854 NC_017625.1 3058621 3059577 D KEGG: sbc:SbBS512_E2564 hypothetical protein; hypothetical protein 3058621..3059577 Escherichia coli DH1 12706462 YP_006092777.1 CDS EcDH1_2855 NC_017625.1 3059613 3060326 R PFAM: protein of unknown function UPF0005; KEGG: sfv:SFV_0770 hypothetical protein; hypothetical protein complement(3059613..3060326) Escherichia coli DH1 12706463 YP_006092778.1 CDS EcDH1_2856 NC_017625.1 3060531 3061235 R PFAM: protein of unknown function UPF0005; KEGG: sbc:SbBS512_E2566 hypothetical protein; hypothetical protein complement(3060531..3061235) Escherichia coli DH1 12706464 YP_006092779.1 CDS EcDH1_2857 NC_017625.1 3061372 3061824 R PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ssn:SSON_0764 molybdopterin synthase large subunit; molybdopterin biosynthesis protein MoaE complement(3061372..3061824) Escherichia coli DH1 12706465 YP_006092780.1 CDS EcDH1_2858 NC_017625.1 3061826 3062071 R TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: sbc:SbBS512_E2568 molybdopterin converting factor, subunit 1; molybdopterin converting factor subunit 1 complement(3061826..3062071) Escherichia coli DH1 12706466 YP_006092781.1 CDS EcDH1_2859 NC_017625.1 3062064 3062549 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: fgenesh4_pg.C_scaffold_620000002; . ; K03639 molybdenum cofactor biosynthesis protein A; molybdenum cofactor biosynthesis protein C complement(3062064..3062549) Escherichia coli DH1 12706467 YP_006092782.1 CDS EcDH1_2860 NC_017625.1 3062552 3063064 R TIGRFAM: molybdenum cofactor synthesis domain protein; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: sbc:SbBS512_E2570 molybdenum cofactor biosynthesis protein B; molybdenum cofactor biosynthesis protein B complement(3062552..3063064) Escherichia coli DH1 12706468 YP_006092783.1 CDS EcDH1_2861 NC_017625.1 3063086 3064075 R KEGG: sbo:SBO_0668 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(3063086..3064075) Escherichia coli DH1 12706469 YP_006092784.1 CDS EcDH1_2862 NC_017625.1 3064472 3065380 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: sbc:SbBS512_E2572 hypothetical protein; hypothetical protein 3064472..3065380 Escherichia coli DH1 12706470 YP_006092785.1 CDS EcDH1_2863 NC_017625.1 3065572 3067593 R KEGG: sbc:SbBS512_E2573 excinuclease ABC, B subunit; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicases; excinuclease ABC subunit B complement(3065572..3067593) Escherichia coli DH1 12706471 YP_006092786.1 CDS EcDH1_2864 NC_017625.1 3068172 3068849 R KEGG: ssn:SSON_0757 dithiobiotin synthetase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid ac-diamide synthase; dethiobiotin synthase complement(3068172..3068849) Escherichia coli DH1 12706472 YP_006092787.1 CDS EcDH1_2865 NC_017625.1 3068842 3069597 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbc:SbBS512_E2575 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(3068842..3069597) Escherichia coli DH1 12706473 YP_006092788.1 CDS EcDH1_2866 NC_017625.1 3069584 3070738 R KEGG: sdy:SDY_0830 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; aminotransferase class-III; 8-amino-7-oxononanoate synthase complement(3069584..3070738) Escherichia coli DH1 12706474 YP_006092789.1 CDS EcDH1_2867 NC_017625.1 3070735 3071775 R KEGG: ssn:SSON_0754 biotin synthesis; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(3070735..3071775) Escherichia coli DH1 12706475 YP_006092790.1 CDS EcDH1_2868 NC_017625.1 3071862 3073151 D TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: ssn:SSON_0753 adenosylmethionine--8-amino-7-oxononanoate transaminase; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3071862..3073151 Escherichia coli DH1 12706476 YP_006092791.1 CDS EcDH1_2869 NC_017625.1 3073210 3073686 D PFAM: PEBP family protein; KEGG: ssn:SSON_0752 predicted kinase inhibitor; PEBP family protein 3073210..3073686 Escherichia coli DH1 12706477 YP_006092792.1 CDS EcDH1_2870 NC_017625.1 3073838 3075121 D PFAM: Pectinesterase; KEGG: sbc:SbBS512_E2580 pectinesterase; pectinesterase 3073838..3075121 Escherichia coli DH1 12706478 YP_006092793.1 CDS EcDH1_2871 NC_017625.1 3075355 3077616 R PFAM: aconitate hydratase domain protein; KEGG: sbo:SBO_0658 hypothetical protein; aconitate hydratase complement(3075355..3077616) Escherichia coli DH1 12706479 YP_006092794.1 CDS EcDH1_2872 NC_017625.1 3077799 3079232 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: sfv:SFV_0753 putative membrane pump protein; anion transporter complement(3077799..3079232) Escherichia coli DH1 12706480 YP_006092795.1 CDS EcDH1_2873 NC_017625.1 3079308 3080360 R PFAM: protein of unknown function DUF453; KEGG: sfv:SFV_0752 hypothetical protein; hypothetical protein complement(3079308..3080360) Escherichia coli DH1 12706481 YP_006092796.1 CDS EcDH1_2874 NC_017625.1 3080544 3081497 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E2590 transcriptional regulator, LysR family; LysR family transcriptional regulator 3080544..3081497 Escherichia coli DH1 12706482 YP_006092797.1 CDS EcDH1_2875 NC_017625.1 3081538 3082533 R KEGG: sdy:SDY_2011 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(3081538..3082533) Escherichia coli DH1 12706483 YP_006092798.1 CDS EcDH1_2876 NC_017625.1 3082688 3083506 D TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: sbo:SBO_0621 predicted hydrolase; cof family hydrolase 3082688..3083506 Escherichia coli DH1 12706484 YP_006092799.1 CDS EcDH1_2877 NC_017625.1 3083507 3084565 R KEGG: ssn:SSON_0717 molybdate transporter ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase; molybdate ABC transporter ATPase complement(3083507..3084565) Escherichia coli DH1 12706485 YP_006092800.1 CDS EcDH1_2878 NC_017625.1 3084568 3085257 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0711 molybdate ABC transporter permease protein; molybdate ABC transporter inner membrane subunit complement(3084568..3085257) Escherichia coli DH1 12706486 YP_006092801.1 CDS EcDH1_2879 NC_017625.1 3085257 3086030 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_0577 molybdate transporter periplasmic protein; molybdenum ABC transporter periplasmic molybdate-binding protein complement(3085257..3086030) Escherichia coli DH1 12706487 YP_006092802.1 CDS EcDH1_2880 NC_017625.1 3086197 3086346 R KEGG: sdy:SDY_0709 hypothetical protein; hypothetical protein complement(3086197..3086346) Escherichia coli DH1 12706488 YP_006092803.1 CDS EcDH1_2881 NC_017625.1 3086475 3087263 D TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein LysR; TOBE domain protein; KEGG: sfv:SFV_0579 DNA-binding transcriptional regulator ModE; ModE family transcriptional regulator 3086475..3087263 Escherichia coli DH1 12706489 YP_006092804.1 CDS EcDH1_2882 NC_017625.1 3087331 3088803 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0707 putative molybdenum transport ATP-binding protein ModF; ABC transporter 3087331..3088803 Escherichia coli DH1 12706490 YP_006092805.1 CDS EcDH1_2883 NC_017625.1 3089064 3090080 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ssn:SSON_0711 UDP-galactose-4-epimerase; UDP-glucose 4-epimerase 3089064..3090080 Escherichia coli DH1 12706491 YP_006092806.1 CDS EcDH1_2884 NC_017625.1 3090090 3091136 D KEGG: ssn:SSON_0710 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase 3090090..3091136 Escherichia coli DH1 12706492 YP_006092807.1 CDS EcDH1_2885 NC_017625.1 3091140 3092288 D TIGRFAM: galactokinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sdy:SDY_0704 galactokinase; galactokinase 3091140..3092288 Escherichia coli DH1 12706493 YP_006092808.1 CDS EcDH1_2886 NC_017625.1 3092282 3093322 D KEGG: sbc:SbBS512_E0677 galactose mutarotase; TIGRFAM: galactose mutarotase; PFAM: Aldose 1-epimerase; galactose mutarotase 3092282..3093322 Escherichia coli DH1 12706494 YP_006092809.1 CDS EcDH1_2887 NC_017625.1 3093524 3094276 D KEGG: sbc:SbBS512_E0676 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 3093524..3094276 Escherichia coli DH1 12706495 YP_006092810.1 CDS EcDH1_2888 NC_017625.1 3094434 3095486 R KEGG: sdy:SDY_0701 phospho-2-dehydro-3-heoxyheptonate aldolase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase complement(3094434..3095486) Escherichia coli DH1 12706496 YP_006092811.1 CDS EcDH1_2889 NC_017625.1 3095802 3096182 D KEGG: sfv:SFV_0587 putative homeobox protein; putative homeobox protein 3095802..3096182 Escherichia coli DH1 12706497 YP_006092812.1 CDS EcDH1_2890 NC_017625.1 3096296 3097237 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sdy:SDY_0696 zinc transporter ZitB; cation diffusion facilitator family transporter 3096296..3097237 Escherichia coli DH1 12706498 YP_006092813.1 CDS EcDH1_2891 NC_017625.1 3097234 3097953 R TIGRFAM: nicotinamide mononucleotide transporter PnuC; PFAM: Nicotinamide mononucleotide transporter PnuC; KEGG: ssn:SSON_0703 required for NMN transport; nicotinamide mononucleotide transporter PnuC complement(3097234..3097953) Escherichia coli DH1 12706499 YP_006092814.1 CDS EcDH1_2892 NC_017625.1 3097991 3099034 R KEGG: sbc:SbBS512_E0671 quinolinate synthetase complex, A subunit; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A complement(3097991..3099034) Escherichia coli DH1 12706500 YP_006092815.1 CDS EcDH1_2893 NC_017625.1 3100730 3101521 R TIGRFAM: tol-pal system protein YbgF; KEGG: sdy:SDY_0690 hypothetical protein; tol-pal system protein YbgF complement(3100730..3101521) Escherichia coli DH1 12706508 YP_006092816.1 CDS EcDH1_2894 NC_017625.1 3101531 3102052 R TIGRFAM: peptidoglycan-associated lipoprotein; PFAM: OmpA/MotB domain protein; KEGG: sbc:SbBS512_E0663 peptidoglycan-associated lipoprotein; peptidoglycan-associated lipoprotein complement(3101531..3102052) Escherichia coli DH1 12706509 YP_006092817.1 CDS EcDH1_2895 NC_017625.1 3102087 3103379 R TIGRFAM: Tol-Pal system beta propeller repeat protein TolB; PFAM: TolB domain protein; WD40 domain protein beta Propeller; KEGG: ssn:SSON_0692 translocation protein TolB; Tol-Pal system beta propeller repeat-containing protein TolB complement(3102087..3103379) Escherichia coli DH1 12706510 YP_006092818.1 CDS EcDH1_2896 NC_017625.1 3103512 3104777 R TIGRFAM: protein TolA; PFAM: Tol-Pal system TolA; protein TolA complement(3103512..3104777) Escherichia coli DH1 12706511 YP_006092819.1 CDS EcDH1_2897 NC_017625.1 3104842 3105270 R TIGRFAM: protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR complement(3104842..3105270) Escherichia coli DH1 12706512 YP_006092820.1 CDS EcDH1_2898 NC_017625.1 3105274 3105966 R TIGRFAM: protein TolQ; PFAM: MotA/TolQ/ExbB proton channel; KEGG: sbc:SbBS512_E0659 protein TolQ; protein TolQ complement(3105274..3105966) Escherichia coli DH1 12706513 YP_006092821.1 CDS EcDH1_2899 NC_017625.1 3105963 3106367 R TIGRFAM: tol-pal system-associated acyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: sbo:SBO_0595 acyl-CoA thioester hydrolase YbgC; tol-pal system-associated acyl-CoA thioesterase complement(3105963..3106367) Escherichia coli DH1 12706514 YP_006092822.1 CDS EcDH1_2900 NC_017625.1 3106517 3106810 R TIGRFAM: cyd operon protein YbgE; PFAM: Cyd operon protein YbgE; KEGG: sdy:SDY_0683 hypothetical protein; cyd operon protein YbgE complement(3106517..3106810) Escherichia coli DH1 12706515 YP_006092823.1 CDS EcDH1_2901 NC_017625.1 3106810 3106923 R TIGRFAM: cyd operon protein YbgT; PFAM: membrane bound YbgT family protein; KEGG: sdy:SDY_0682 putative outer membrane lipoprotein; cyd operon protein YbgT complement(3106810..3106923) Escherichia coli DH1 12706516 YP_006092824.1 CDS EcDH1_2902 NC_017625.1 3106938 3108077 R KEGG: sbc:SbBS512_E0655 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase, subunit II complement(3106938..3108077) Escherichia coli DH1 12706517 YP_006092825.1 CDS EcDH1_2903 NC_017625.1 3108093 3109661 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: sbc:SbBS512_E0654 cytochrome d ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(3108093..3109661) Escherichia coli DH1 12706518 YP_006092826.1 CDS EcDH1_2904 NC_017625.1 3110508 3113141 R PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; KEGG: sfv:SFV_0604 alpha-mannosidase; glycoside hydrolase family protein complement(3110508..3113141) Escherichia coli DH1 12706519 YP_006092827.1 CDS EcDH1_2905 NC_017625.1 3113159 3115075 R TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: ssn:SSON_0682 2-O-A-mannosyl-D-glycerate specific PTS transporten components IIABC; PTS system fructose subfamily transporter subunit IIC complement(3113159..3115075) Escherichia coli DH1 12706520 YP_006092828.1 CDS EcDH1_2906 NC_017625.1 3115244 3115966 D PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sbo:SBO_0588 DNA-binding transcriptional dual regulator, fatty-acyl-binding; GntR family transcriptional regulator 3115244..3115966 Escherichia coli DH1 12706521 YP_006092829.1 CDS EcDH1_2907 NC_017625.1 3116070 3116939 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: sbc:SbBS512_E0648 succinate-CoA ligase, alpha subunit; succinyl-CoA synthetase subunit alpha complement(3116070..3116939) Escherichia coli DH1 12706522 YP_006092830.1 CDS EcDH1_2908 NC_017625.1 3116939 3118105 R KEGG: ssn:SSON_0679 succinyl-CoA synthetase subunit beta; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta complement(3116939..3118105) Escherichia coli DH1 12706523 YP_006092831.1 CDS EcDH1_2909 NC_017625.1 3118380 3119597 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: ssn:SSON_0678 dihydrolipoamide acetyltransferase; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(3118380..3119597) Escherichia coli DH1 12706524 YP_006092832.1 CDS EcDH1_2910 NC_017625.1 3119612 3122413 R KEGG: sbc:SbBS512_E0645 oxoglutarate dehydrogenase (succinyl-transferring), E1 component; TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase E1 component; Transketolase central region; 2-oxoglutarate dehydrogenase, E1 subunit complement(3119612..3122413) Escherichia coli DH1 12706525 YP_006092833.1 CDS EcDH1_2911 NC_017625.1 3122714 3123430 R TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: sbc:SbBS512_E0643 succinate dehydrogenase, iron-sulfur subunit; succinate dehydrogenase and fumarate reductase iron-sulfur protein complement(3122714..3123430) Escherichia coli DH1 12706526 YP_006092834.1 CDS EcDH1_2912 NC_017625.1 3123446 3125212 R KEGG: sbo:SBO_0581 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; succinate dehydrogenase, flavoprotein subunit complement(3123446..3125212) Escherichia coli DH1 12706527 YP_006092835.1 CDS EcDH1_2913 NC_017625.1 3125212 3125559 R TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; KEGG: sdy:SDY_0660 succinate dehydrogenase cytochrome b556 small membrane subunit; succinate dehydrogenase, hydrophobic membrane anchor protein complement(3125212..3125559) Escherichia coli DH1 12706528 YP_006092836.1 CDS EcDH1_2914 NC_017625.1 3125553 3125957 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: sbc:SbBS512_E0640 succinate dehydrogenase, cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(3125553..3125957) Escherichia coli DH1 12706529 YP_006092837.1 CDS EcDH1_2915 NC_017625.1 3126338 3126445 D hypothetical protein 3126338..3126445 Escherichia coli DH1 12706530 YP_006092838.1 CDS EcDH1_2916 NC_017625.1 3126651 3127934 D KEGG: sbc:SbBS512_E0638 citrate (Si)-synthase; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 3126651..3127934 Escherichia coli DH1 12706531 YP_006092839.1 CDS EcDH1_2917 NC_017625.1 3128324 3128890 D PFAM: Fimbrial protein; KEGG: sdy:SDY_0655 putative fimbrial-like protein; Fimbrial protein 3128324..3128890 Escherichia coli DH1 12706532 YP_006092840.1 CDS EcDH1_2918 NC_017625.1 3128941 3131397 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sbc:SbBS512_E0635 fimbrial usher family protein; fimbrial biogenesis outer membrane usher protein 3128941..3131397 Escherichia coli DH1 12706533 YP_006092841.1 CDS EcDH1_2919 NC_017625.1 3131412 3132140 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbc:SbBS512_E0634 periplasmic pilus chaperone family protein; Pili assembly chaperone, N-terminal 3131412..3132140 Escherichia coli DH1 12706534 YP_006092842.1 CDS EcDH1_2920 NC_017625.1 3132137 3133198 D KEGG: ssn:SSON_0667 hypothetical protein; hypothetical protein 3132137..3133198 Escherichia coli DH1 12706535 YP_006092843.1 CDS EcDH1_2921 NC_017625.1 3133350 3134396 D TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: sdy:SDY_0650 putative transport protein; membrane protein AbrB 3133350..3134396 Escherichia coli DH1 12706536 YP_006092844.1 CDS EcDH1_2922 NC_017625.1 3134393 3135184 R PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: ssn:SSON_0665 endonuclease VIII; DNA-(apurinic or apyrimidinic site) lyase complement(3134393..3135184) Escherichia coli DH1 12706537 YP_006092845.1 CDS EcDH1_2923 NC_017625.1 3135220 3135954 R PFAM: LamB/YcsF family protein; KEGG: ssn:SSON_0664 hypothetical protein; LamB/YcsF family protein complement(3135220..3135954) Escherichia coli DH1 12706538 YP_006092846.1 CDS EcDH1_2924 NC_017625.1 3135944 3136876 R TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sbc:SbBS512_E0629 allophanate hydrolase, subunit 2; urea amidolyase-like protein complement(3135944..3136876) Escherichia coli DH1 12706539 YP_006092847.1 CDS EcDH1_2925 NC_017625.1 3136870 3137526 R PFAM: Allophanate hydrolase subunit 1; KEGG: sbc:SbBS512_E0628 allophanate hydrolase, subunit 1; allophanate hydrolase subunit 1 complement(3136870..3137526) Escherichia coli DH1 12706540 YP_006092848.1 CDS EcDH1_2926 NC_017625.1 3137549 3138292 R PFAM: protein of unknown function DUF34; KEGG: sbc:SbBS512_E0627 NIF3 family protein; hypothetical protein complement(3137549..3138292) Escherichia coli DH1 12706541 YP_006092849.1 CDS EcDH1_2927 NC_017625.1 3138563 3140044 D KEGG: sfx:S0601 putative transport protein; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 3138563..3140044 Escherichia coli DH1 12706542 YP_006092850.1 CDS EcDH1_2928 NC_017625.1 3140194 3141612 R PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ssn:SSON_0657 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase complement(3140194..3141612) Escherichia coli DH1 12706543 YP_006092851.1 CDS EcDH1_2929 NC_017625.1 3141609 3142118 R PFAM: Protein of unknown function DUF1722; KEGG: sbc:SbBS512_E0624 hypothetical protein; hypothetical protein complement(3141609..3142118) Escherichia coli DH1 12706544 YP_006092852.1 CDS EcDH1_2930 NC_017625.1 3142266 3143027 R PFAM: transposase IS4 family protein; KEGG: ssn:SSON_0260 putative receptor; transposase IS4 family protein complement(3142266..3143027) Escherichia coli DH1 12706545 YP_006092853.1 CDS EcDH1_2933 NC_017625.1 3144900 3145469 R hypothetical protein complement(3144900..3145469) Escherichia coli DH1 12706548 YP_006092854.1 CDS EcDH1_2934 NC_017625.1 3145466 3146899 R PFAM: RHS protein; YD repeat-containing protein; KEGG: ssn:SSON_0655 RhsA protein in rhs element; RHS protein complement(3145466..3146899) Escherichia coli DH1 12706549 YP_006092855.1 CDS EcDH1_2935 NC_017625.1 3147017 3147343 R hypothetical protein complement(3147017..3147343) Escherichia coli DH1 12706550 YP_006092856.1 CDS EcDH1_2936 NC_017625.1 3147343 3151536 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; YD repeat protein complement(3147343..3151536) Escherichia coli DH1 12706551 YP_006092857.1 CDS EcDH1_2937 NC_017625.1 3151779 3151985 R KEGG: sdy:SDY_0635 hypothetical protein; hypothetical protein complement(3151779..3151985) Escherichia coli DH1 12706552 YP_006092858.1 CDS EcDH1_2938 NC_017625.1 3152387 3154060 D KEGG: sbo:SBO_0560 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A 3152387..3154060 Escherichia coli DH1 12706553 YP_006092859.1 CDS EcDH1_2939 NC_017625.1 3154083 3156131 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ssn:SSON_0648 potassium-transporting ATPase subunit B; K+-transporting ATPase subunit B 3154083..3156131 Escherichia coli DH1 12706554 YP_006092860.1 CDS EcDH1_2940 NC_017625.1 3156140 3156712 D KEGG: ssn:SSON_0647 potassium-transporting ATPase subunit C; TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K transporting ATPase KdpC subunit; potassium-transporting ATPase subunit C 3156140..3156712 Escherichia coli DH1 12706555 YP_006092861.1 CDS EcDH1_2941 NC_017625.1 3156705 3159389 D PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: ssn:SSON_0646 sensor protein KdpD; osmosensitive K+ channel signal transduction histidine kinase 3156705..3159389 Escherichia coli DH1 12706556 YP_006092862.1 CDS EcDH1_2942 NC_017625.1 3159386 3160063 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_0645 DNA-binding response regulator in two-component regulatory system with KdpD; winged helix family two component transcriptional regulator 3159386..3160063 Escherichia coli DH1 12706557 YP_006092863.1 CDS EcDH1_2943 NC_017625.1 3160279 3160536 R KEGG: sbo:SBO_0555 hypothetical protein; hypothetical protein complement(3160279..3160536) Escherichia coli DH1 12706558 YP_006092864.1 CDS EcDH1_2944 NC_017625.1 3160659 3162857 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sbo:SBO_0554 ornithine decarboxylase isozyme, inducible; Ornithine decarboxylase 3160659..3162857 Escherichia coli DH1 12706559 YP_006092865.1 CDS EcDH1_2945 NC_017625.1 3162854 3164173 D TIGRFAM: arginine/ornithine antiporter; PFAM: amino acid permease-associated region; KEGG: ssn:SSON_0643 putrescine transport protein; arginine/ornithine antiporter 3162854..3164173 Escherichia coli DH1 12706560 YP_006092866.1 CDS EcDH1_2948 NC_017625.1 3165213 3165707 R KEGG: sbo:SBO_0551 putative pectinase; putative pectinase complement(3165213..3165707) Escherichia coli DH1 12706563 YP_006092867.1 CDS EcDH1_2949 NC_017625.1 3165921 3167561 R TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sbc:SbBS512_E0562 phosphoglucomutase, alpha-D-glucose phosphate-specific; phosphoglucomutase, alpha-D-glucose phosphate-specific complement(3165921..3167561) Escherichia coli DH1 12706564 YP_006092868.1 CDS EcDH1_2950 NC_017625.1 3167587 3168132 R PFAM: SeqA family protein; KEGG: sbc:SbBS512_E0563 protein SeqA; SeqA family protein complement(3167587..3168132) Escherichia coli DH1 12706565 YP_006092869.1 CDS EcDH1_2951 NC_017625.1 3168317 3169081 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: sdy:SDY_0626 hypothetical protein; alpha/beta hydrolase fold protein 3168317..3169081 Escherichia coli DH1 12706566 YP_006092870.1 CDS EcDH1_2952 NC_017625.1 3169152 3169514 D PFAM: CopG domain protein DNA-binding domain protein; KEGG: sdy:SDY_0625 LexA regulated protein; CopG family transcriptional regulator 3169152..3169514 Escherichia coli DH1 12706567 YP_006092871.1 CDS EcDH1_2953 NC_017625.1 3169654 3170184 D TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: sdy:SDY_0624 flavodoxin FldA; flavodoxin 3169654..3170184 Escherichia coli DH1 12706568 YP_006092872.1 CDS EcDH1_2954 NC_017625.1 3170473 3170919 D PFAM: ferric-uptake regulator; KEGG: sdy:SDY_0623 ferric uptake regulator; ferric uptake regulator family protein 3170473..3170919 Escherichia coli DH1 12706569 YP_006092873.1 CDS EcDH1_2955 NC_017625.1 3171003 3171329 R KEGG: sfl:SF0611 hypothetical protein; hypothetical protein complement(3171003..3171329) Escherichia coli DH1 12706570 YP_006092874.1 CDS EcDH1_2956 NC_017625.1 3171379 3172785 R PFAM: outer membrane porin; KEGG: sbc:SbBS512_E0569 outer membrane porin, OprD family; outer membrane porin complement(3171379..3172785) Escherichia coli DH1 12706571 YP_006092875.1 CDS EcDH1_2957 NC_017625.1 3173362 3175026 R TIGRFAM: glutaminyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: ssn:SSON_0634 glutaminyl-tRNA synthetase; glutaminyl-tRNA synthetase complement(3173362..3175026) Escherichia coli DH1 12706572 YP_006092876.1 CDS EcDH1_2958 NC_017625.1 3175229 3177175 R TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, N-acetylglucosamine-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: sfv:SFV_0652 N-acetyl glucosamine specific PTS system components IIABC; PTS system N-acetylglucosamine-specific transporter subunit IIBC complement(3175229..3177175) Escherichia coli DH1 12706573 YP_006092877.1 CDS EcDH1_2959 NC_017625.1 3177508 3178308 D TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sbc:SbBS512_E0573 glucosamine-6-phosphate isomerase; glucosamine-6-phosphate isomerase 3177508..3178308 Escherichia coli DH1 12706574 YP_006092878.1 CDS EcDH1_2960 NC_017625.1 3178368 3179516 D KEGG: sbc:SbBS512_E0574 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 3178368..3179516 Escherichia coli DH1 12706575 YP_006092879.1 CDS EcDH1_2961 NC_017625.1 3179525 3180745 D PFAM: ROK family protein; KEGG: sdy:SDY_0610 transcriptional repressor of N-acetylglucosamine operon; ROK family protein 3179525..3180745 Escherichia coli DH1 12706576 YP_006092880.1 CDS EcDH1_2962 NC_017625.1 3180793 3181545 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdy:SDY_0609 UMP phosphatase; HAD-superfamily hydrolase 3180793..3181545 Escherichia coli DH1 12706577 YP_006092881.1 CDS EcDH1_2963 NC_017625.1 3181942 3183606 D TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase class-II; asparagine synthase; KEGG: sfv:SFV_0657 asparagine synthetase B; asparagine synthase 3181942..3183606 Escherichia coli DH1 12706578 YP_006092882.1 CDS EcDH1_2964 NC_017625.1 3184843 3186018 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sbc:SbBS512_E0585 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; UbiH/UbiF/VisC/COQ6 family Ubiquinone biosynthesis hydroxylase complement(3184843..3186018) Escherichia coli DH1 12706586 YP_006092883.1 CDS EcDH1_2965 NC_017625.1 3186164 3187588 D KEGG: sdy:SDY_0597 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB 3186164..3187588 Escherichia coli DH1 12706587 YP_006092884.1 CDS EcDH1_2966 NC_017625.1 3187702 3188781 D PFAM: PhoH family protein; KEGG: sdy:SDY_0596 putative ATP-binding protein in pho regulon; PhoH family protein 3187702..3188781 Escherichia coli DH1 12706588 YP_006092885.1 CDS EcDH1_2967 NC_017625.1 3188778 3189245 D PFAM: protein of unknown function UPF0054; KEGG: sbo:SBO_0523 hypothetical protein; hypothetical protein 3188778..3189245 Escherichia coli DH1 12706589 YP_006092886.1 CDS EcDH1_2968 NC_017625.1 3189335 3190213 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: sdy:SDY_0594 putative transport protein; transporter-associated protein 3189335..3190213 Escherichia coli DH1 12706590 YP_006092887.1 CDS EcDH1_2969 NC_017625.1 3190238 3191776 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sfv:SFV_0670 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 3190238..3191776 Escherichia coli DH1 12706591 YP_006092888.1 CDS EcDH1_2970 NC_017625.1 3192142 3193122 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 3192142..3193122 Escherichia coli DH1 12706592 YP_006092889.1 CDS EcDH1_2971 NC_017625.1 3193372 3194280 D PFAM: extracellular solute-binding protein family 3; KEGG: sbo:SBO_0518 glutamate and aspartate transporter subunit; family 3 extracellular solute-binding protein 3193372..3194280 Escherichia coli DH1 12706593 YP_006092890.1 CDS EcDH1_2972 NC_017625.1 3194450 3195190 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_0672 glutamate/aspartate transport system permease; polar amino acid ABC transporter inner membrane subunit 3194450..3195190 Escherichia coli DH1 12706594 YP_006092891.1 CDS EcDH1_2973 NC_017625.1 3195190 3195864 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sdy:SDY_0588 glutamate/aspartate transport system permease; polar amino acid ABC transporter inner membrane subunit 3195190..3195864 Escherichia coli DH1 12706595 YP_006092892.1 CDS EcDH1_2974 NC_017625.1 3195864 3196589 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0606 ATP-binding protein of glutamate/aspartate transport system; ABC transporter 3195864..3196589 Escherichia coli DH1 12706596 YP_006092893.1 CDS EcDH1_2975 NC_017625.1 3196707 3197642 D PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sbc:SbBS512_E0598 inosine-uridine preferring nucleoside hydrolase; Purine nucleosidase 3196707..3197642 Escherichia coli DH1 12706597 YP_006092894.1 CDS EcDH1_2976 NC_017625.1 3197726 3199396 D PFAM: Heat shock protein 70; KEGG: ssn:SSON_0604 putative DnaK protein; 2-alkenal reductase 3197726..3199396 Escherichia coli DH1 12706598 YP_006092895.1 CDS EcDH1_2977 NC_017625.1 3199456 3200907 R PFAM: heat shock protein DnaJ domain protein; KEGG: ssn:SSON_0603 hypothetical protein; heat shock protein DnaJ domain-containing protein complement(3199456..3200907) Escherichia coli DH1 12706599 YP_006092896.1 CDS EcDH1_2978 NC_017625.1 3200904 3201611 R PFAM: protein of unknown function DUF1266; KEGG: sfv:SFV_0678 putative tRNA ligase; hypothetical protein complement(3200904..3201611) Escherichia coli DH1 12706600 YP_006092897.1 CDS EcDH1_2979 NC_017625.1 3201713 3202267 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: sfv:SFV_0679 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 3201713..3202267 Escherichia coli DH1 12706601 YP_006092898.1 CDS EcDH1_2980 NC_017625.1 3202277 3203704 R PFAM: heat shock protein DnaJ domain protein; KEGG: sbo:SBO_0510 putative enzyme of polynucleotide modification; heat shock protein DnaJ domain-containing protein complement(3202277..3203704) Escherichia coli DH1 12706602 YP_006092899.1 CDS EcDH1_2981 NC_017625.1 3203701 3204408 R PFAM: protein of unknown function DUF1266; KEGG: sbo:SBO_0509 hypothetical protein; hypothetical protein complement(3203701..3204408) Escherichia coli DH1 12706603 YP_006092900.1 CDS EcDH1_2982 NC_017625.1 3204572 3205549 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: ssn:SSON_0598 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 3204572..3205549 Escherichia coli DH1 12706604 YP_006092901.1 CDS EcDH1_2983 NC_017625.1 3205619 3206101 R PFAM: protein of unknown function DUF1451; KEGG: sdy:SDY_0567 hypothetical protein; hypothetical protein complement(3205619..3206101) Escherichia coli DH1 12706605 YP_006092902.1 CDS EcDH1_2984 NC_017625.1 3206336 3208918 D TIGRFAM: leucyl-tRNA synthetase; KEGG: sdy:SDY_0564 leucyl-tRNA synthetase; leucyl-tRNA synthetase 3206336..3208918 Escherichia coli DH1 12706606 YP_006092903.1 CDS EcDH1_2985 NC_017625.1 3208933 3209514 D PFAM: Rare lipoprotein B; KEGG: sbc:SbBS512_E0610 rare lipoprotein B family protein; Rare lipoprotein B 3208933..3209514 Escherichia coli DH1 12706607 YP_006092904.1 CDS EcDH1_2986 NC_017625.1 3209514 3210545 D KEGG: sbo:SBO_0504 DNA polymerase III subunit delta; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; DNA polymerase III subunit delta 3209514..3210545 Escherichia coli DH1 12706608 YP_006092905.1 CDS EcDH1_2987 NC_017625.1 3210547 3211188 D KEGG: ssn:SSON_0593 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 3210547..3211188 Escherichia coli DH1 12706609 YP_006092906.1 CDS EcDH1_2988 NC_017625.1 3211212 3211823 D TIGRFAM: alpha-ribazole phosphatase; PFAM: Phosphoglycerate mutase; KEGG: sfv:SFV_0688 phosphohistidine protein PhpB; alpha-ribazole phosphatase 3211212..3211823 Escherichia coli DH1 12706610 YP_006092907.1 CDS EcDH1_2989 NC_017625.1 3212083 3212400 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: sbc:SbBS512_E0614 iojap family protein; iojap family protein 3212083..3212400 Escherichia coli DH1 12706611 YP_006092908.1 CDS EcDH1_2990 NC_017625.1 3212404 3212871 D PFAM: protein of unknown function DUF163; KEGG: sdy:SDY_0558 hypothetical protein; hypothetical protein 3212404..3212871 Escherichia coli DH1 12706612 YP_006092909.1 CDS EcDH1_2991 NC_017625.1 3212902 3214803 D KEGG: sbc:SbBS512_E0616 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; penicillin-binding protein 2 3212902..3214803 Escherichia coli DH1 12706613 YP_006092910.1 CDS EcDH1_2992 NC_017625.1 3214806 3215918 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: sbc:SbBS512_E0617 rod shape-determining protein RodA; rod shape-determining protein RodA 3214806..3215918 Escherichia coli DH1 12706614 YP_006092911.1 CDS EcDH1_2993 NC_017625.1 3215929 3217017 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: ssn:SSON_0587 rare lipoprotein A; rare lipoprotein A 3215929..3217017 Escherichia coli DH1 12706615 YP_006092912.1 CDS EcDH1_2994 NC_017625.1 3217084 3218367 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: sfv:SFV_0694 D-alanyl-D-alanine carboxypeptidase fraction A; serine-type D-Ala-D-Ala carboxypeptidase 3217084..3218367 Escherichia coli DH1 12706616 YP_006092913.1 CDS EcDH1_2995 NC_017625.1 3218477 3218740 D PFAM: protein of unknown function DUF493; KEGG: sdy:SDY_0553 hypothetical protein; hypothetical protein 3218477..3218740 Escherichia coli DH1 12706617 YP_006092914.1 CDS EcDH1_2996 NC_017625.1 3218841 3219482 D TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: sdy:SDY_0552 lipoyltransferase; lipoate-protein ligase B 3218841..3219482 Escherichia coli DH1 12706618 YP_006092915.1 CDS EcDH1_2997 NC_017625.1 3219741 3220694 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_0697 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 3219741..3220694 Escherichia coli DH1 12706619 YP_006092916.1 CDS EcDH1_2998 NC_017625.1 3220903 3221868 D KEGG: sdy:SDY_0550 lipoyl synthase; TIGRFAM: lipoic acid synthetase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; lipoic acid synthetase 3220903..3221868 Escherichia coli DH1 12706620 YP_006092917.1 CDS EcDH1_2999 NC_017625.1 3221969 3222172 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sdy:SDY_0549 twin arginine translocase protein E; twin-arginine translocation protein, TatA/E family subunit complement(3221969..3222172) Escherichia coli DH1 12706621 YP_006092918.1 CDS EcDH1_3001 NC_017625.1 3223181 3223564 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: sbc:SbBS512_E0539 CrcB protein; CrcB protein 3223181..3223564 Escherichia coli DH1 12706623 YP_006092919.1 CDS EcDH1_3002 NC_017625.1 3223618 3223827 R PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: sdy:SDY_0546 cold shock protein E; cold-shock protein complement(3223618..3223827) Escherichia coli DH1 12706624 YP_006092920.1 CDS EcDH1_3003 NC_017625.1 3224002 3224562 R PFAM: Antimicrobial peptide resistance and lipid A acylation PagP; KEGG: sfv:SFV_0703 palmitoyl transferase for lipid A; antimicrobial peptide resistance and lipid A acylation PagP complement(3224002..3224562) Escherichia coli DH1 12706625 YP_006092921.1 CDS EcDH1_3004 NC_017625.1 3225151 3226536 D TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sbo:SBO_0486 C4-dicarboxylate transporter DcuC; anaerobic c4-dicarboxylate antiporter 3225151..3226536 Escherichia coli DH1 12706626 YP_006092922.1 CDS EcDH1_3005 NC_017625.1 3226577 3227257 R PFAM: response regulator receiver; KEGG: sbc:SbBS512_E0535 transcriptional regulatory protein DpiA; fused response regulator receiver/hypothetical protein complement(3226577..3227257) Escherichia coli DH1 12706627 YP_006092923.1 CDS EcDH1_3006 NC_017625.1 3227226 3228884 R PFAM: ATP-binding region ATPase domain protein; SMART: PAS domain containing protein; KEGG: ssn:SSON_0572 putative sensor-type protein; signal transduction histidine kinase regulating citrate/malate metabolism complement(3227226..3228884) Escherichia coli DH1 12706628 YP_006092924.1 CDS EcDH1_3007 NC_017625.1 3229263 3230321 D KEGG: sbo:SBO_0483 citrate lyase synthetase; TIGRFAM: cytidyltransferase-related domain protein; citrate lyase ligase; PFAM: GCN5-related N-acetyltransferase; Citrate lyase ligase domain protein; citrate lyase ligase 3229263..3230321 Escherichia coli DH1 12706629 YP_006092925.1 CDS EcDH1_3008 NC_017625.1 3230336 3230632 D TIGRFAM: citrate lyase acyl carrier protein; PFAM: Citrate lyase acyl carrier protein CitD; KEGG: ssn:SSON_0569 citrate lyase subunit gamma; citrate lyase acyl carrier protein 3230336..3230632 Escherichia coli DH1 12706630 YP_006092926.1 CDS EcDH1_3009 NC_017625.1 3230629 3231537 D KEGG: sbc:SbBS512_E0530 citrate (pro-3S)-lyase, beta subunit; TIGRFAM: citrate lyase, beta subunit; PFAM: HpcH/HpaI aldolase; citrate lyase subunit beta 3230629..3231537 Escherichia coli DH1 12706631 YP_006092927.1 CDS EcDH1_3010 NC_017625.1 3231548 3233080 D KEGG: ssn:SSON_0567 citrate lyase alpha chain; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit; citrate lyase subunit alpha 3231548..3233080 Escherichia coli DH1 12706632 YP_006092928.1 CDS EcDH1_3011 NC_017625.1 3233084 3233635 D KEGG: sbc:SbBS512_E0528 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; TIGRFAM: holo-ACP synthase CitX; PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; holo-ACP synthase CitX 3233084..3233635 Escherichia coli DH1 12706633 YP_006092929.1 CDS EcDH1_3012 NC_017625.1 3233610 3234488 D KEGG: ssn:SSON_0565 triphosphoribosyl-dephospho-CoA synthase; TIGRFAM: triphosphoribosyl-dephospho-CoA synthase CitG; PFAM: triphosphoribosyl-dephospho-CoA protein; triphosphoribosyl-dephospho-CoA synthase CitG 3233610..3234488 Escherichia coli DH1 12706634 YP_006092930.1 CDS EcDH1_3013 NC_017625.1 3234539 3236002 D TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: sbo:SBO_0477 putative a membrane protein; anion transporter 3234539..3236002 Escherichia coli DH1 12706635 YP_006092931.1 CDS EcDH1_3014 NC_017625.1 3236116 3236922 D PFAM: ribonuclease T2; KEGG: sbc:SbBS512_E0525 ribonuclease I; ribonuclease 3236116..3236922 Escherichia coli DH1 12706636 YP_006092932.1 CDS EcDH1_3015 NC_017625.1 3237152 3237562 D KEGG: sbc:SbBS512_E0524 regulator of nucleoside diphosphate kinase; GreA/GreB family elongation factor 3237152..3237562 Escherichia coli DH1 12706637 YP_006092933.1 CDS EcDH1_3016 NC_017625.1 3237793 3239031 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbo:SBO_0473 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein complement(3237793..3239031) Escherichia coli DH1 12706638 YP_006092934.1 CDS EcDH1_3017 NC_017625.1 3239252 3239680 D PFAM: UspA domain protein; KEGG: sdy:SDY_0542 hypothetical protein; UspA domain-containing protein 3239252..3239680 Escherichia coli DH1 12706639 YP_006092935.1 CDS EcDH1_3018 NC_017625.1 3239801 3241396 R TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbc:SbBS512_E0520 alkyl hydroperoxide reductase subunit F; alkyl hydroperoxide reductase complement(3239801..3241396) Escherichia coli DH1 12706640 YP_006092936.1 CDS EcDH1_3019 NC_017625.1 3241611 3242174 R KEGG: sbc:SbBS512_E0519 alkyl hydroperoxide reductase subunit C; TIGRFAM: peroxiredoxin; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxiredoxin complement(3241611..3242174) Escherichia coli DH1 12706641 YP_006092937.1 CDS EcDH1_3020 NC_017625.1 3242546 3243292 D KEGG: sfv:SFV_0558 disulfide isomerase/thiol-disulfide oxidase; disulfide isomerase/thiol-disulfide oxidase 3242546..3243292 Escherichia coli DH1 12706642 YP_006092938.1 CDS EcDH1_3021 NC_017625.1 3243501 3244403 D PFAM: regulatory protein LysR; KEGG: sfv:SFV_0557 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 3243501..3244403 Escherichia coli DH1 12706643 YP_006092939.1 CDS EcDH1_3022 NC_017625.1 3244550 3245770 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: cko:CKO_02557 hypothetical protein; phosphoadenosine phosphosulfate reductase 3244550..3245770 Escherichia coli DH1 12706644 YP_006092940.1 CDS EcDH1_3023 NC_017625.1 3245755 3246372 D PFAM: ParB domain protein nuclease; KEGG: ssn:SSON_0553 hypothetical protein; ParB domain-containing protein nuclease 3245755..3246372 Escherichia coli DH1 12706645 YP_006092941.1 CDS EcDH1_3024 NC_017625.1 3246373 3247533 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aminotransferase class I and II; KEGG: sfv:SFV_0549 putative aminotransferase; class I and II aminotransferase complement(3246373..3247533) Escherichia coli DH1 12706646 YP_006092942.1 CDS EcDH1_3025 NC_017625.1 3247642 3248730 D PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: sfx:S0519 hypothetical protein; iron-containing alcohol dehydrogenase 3247642..3248730 Escherichia coli DH1 12706647 YP_006092943.1 CDS EcDH1_3026 NC_017625.1 3248740 3248937 R PFAM: protein of unknown function DUF466; KEGG: sdy:SDY_0530 hypothetical protein; hypothetical protein complement(3248740..3248937) Escherichia coli DH1 12706648 YP_006092944.1 CDS EcDH1_3027 NC_017625.1 3248949 3249101 R hypothetical protein complement(3248949..3249101) Escherichia coli DH1 12706649 YP_006092945.1 CDS EcDH1_3028 NC_017625.1 3249120 3251225 R PFAM: carbon starvation protein CstA; KEGG: sbo:SBO_0459 carbon starvation protein; carbon starvation protein CstA complement(3249120..3251225) Escherichia coli DH1 12706650 YP_006092946.1 CDS EcDH1_3029 NC_017625.1 3251406 3251819 R PFAM: thioesterase superfamily protein; KEGG: sdy:SDY_0528 hypothetical protein; thioesterase superfamily protein complement(3251406..3251819) Escherichia coli DH1 12706651 YP_006092947.1 CDS EcDH1_3030 NC_017625.1 3251822 3252568 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sdy:SDY_0527 2,3-dihydroxybenzoate-2,3-dehydrogenase; short-chain dehydrogenase/reductase SDR complement(3251822..3252568) Escherichia coli DH1 12706652 YP_006092948.1 CDS EcDH1_3031 NC_017625.1 3252568 3253425 R PFAM: isochorismatase hydrolase; phosphopantetheine-binding; KEGG: sfl:SF0509 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase; isochorismatase complement(3252568..3253425) Escherichia coli DH1 12706653 YP_006092949.1 CDS EcDH1_3032 NC_017625.1 3253439 3255049 R TIGRFAM: 2,3-dihydroxybenzoate-AMP ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: sdy:SDY_0525 enterobactin synthase subunit E; 2,3-dihydroxybenzoate-AMP ligase complement(3253439..3255049) Escherichia coli DH1 12706654 YP_006092950.1 CDS EcDH1_3033 NC_017625.1 3255059 3256234 R TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: sdy:SDY_0524 isochorismate hydroxymutase 2; isochorismate synthase complement(3255059..3256234) Escherichia coli DH1 12706655 YP_006092951.1 CDS EcDH1_3034 NC_017625.1 3256609 3257565 D PFAM: periplasmic binding protein; KEGG: sbc:SbBS512_E0494 ferrienterobactin ABC transporter, ferrienterobactin-binding periplasmic protein FepB; periplasmic binding protein 3256609..3257565 Escherichia coli DH1 12706656 YP_006092952.1 CDS EcDH1_3035 NC_017625.1 3257569 3258819 R PFAM: major facilitator superfamily MFS_1; KEGG: ssn:SSON_0542 enterobactin exporter EntS; major facilitator superfamily protein complement(3257569..3258819) Escherichia coli DH1 12706657 YP_006092953.1 CDS EcDH1_3036 NC_017625.1 3258930 3259934 D PFAM: transport system permease protein; KEGG: sbc:SbBS512_E0492 ferric enterobactin transport system permease protein FepD; transport system permease 3258930..3259934 Escherichia coli DH1 12706658 YP_006092954.1 CDS EcDH1_3037 NC_017625.1 3259931 3260923 D PFAM: transport system permease protein; KEGG: grail3.13196000101; . ; K02015 iron complex transport system permease protein; transport system permease 3259931..3260923 Escherichia coli DH1 12706659 YP_006092955.1 CDS EcDH1_3038 NC_017625.1 3260920 3261735 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0519 iron-enterobactin transporter ATP-binding protein; ABC transporter 3260920..3261735 Escherichia coli DH1 12706660 YP_006092956.1 CDS EcDH1_3039 NC_017625.1 3261732 3262865 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: sdy:SDY_0518 ferric enterobactin transport; lipopolysaccharide biosynthesis protein complement(3261732..3262865) Escherichia coli DH1 12706661 YP_006092957.1 CDS EcDH1_3040 NC_017625.1 3263081 3266962 R TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: ssn:SSON_0537 enterobactin synthase subunit F; amino acid adenylation protein complement(3263081..3266962) Escherichia coli DH1 12706662 YP_006092958.1 CDS EcDH1_3041 NC_017625.1 3266959 3267177 R PFAM: MbtH domain protein; KEGG: sbc:SbBS512_E0487 MbtH-like protein; MbtH domain-containing protein complement(3266959..3267177) Escherichia coli DH1 12706663 YP_006092959.1 CDS EcDH1_3042 NC_017625.1 3267180 3268382 R PFAM: putative esterase; KEGG: sbc:SbBS512_E0486 enterochelin esterase; putative esterase complement(3267180..3268382) Escherichia coli DH1 12706664 YP_006092960.1 CDS EcDH1_3043 NC_017625.1 3268625 3270865 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfx:S0502 outer membrane receptor FepA; TonB-dependent siderophore receptor 3268625..3270865 Escherichia coli DH1 12706665 YP_006092961.1 CDS EcDH1_3044 NC_017625.1 3270917 3271660 D PFAM: 4'-phosphopantetheinyl transferase; KEGG: sfv:SFV_0528 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; 4'-phosphopantetheinyl transferase 3270917..3271660 Escherichia coli DH1 12706666 YP_006092962.1 CDS EcDH1_3045 NC_017625.1 3271779 3271919 R hypothetical protein complement(3271779..3271919) Escherichia coli DH1 12706667 YP_006092963.1 CDS EcDH1_3046 NC_017625.1 3271942 3273054 R PFAM: transposase IS4 family protein; KEGG: ssn:SSON_P186 IS186 ORF1; transposase IS4 family protein complement(3271942..3273054) Escherichia coli DH1 12706668 YP_006092964.1 CDS EcDH1_3047 NC_017625.1 3273131 3273382 R PFAM: Hok/gef cell toxic protein; KEGG: sfx:S0500 hypothetical protein; Hok/gef cell toxic protein complement(3273131..3273382) Escherichia coli DH1 12706669 YP_006092965.1 CDS EcDH1_3048 NC_017625.1 3273736 3274854 D PFAM: glutamate--cysteine ligase GCS2; KEGG: ssn:SSON_0532 hypothetical protein; glutamate--cysteine ligase 3273736..3274854 Escherichia coli DH1 12706670 YP_006092966.1 CDS EcDH1_3049 NC_017625.1 3274968 3275168 D KEGG: sbc:SbBS512_E0474 putative lipoprotein; putative lipoprotein 3274968..3275168 Escherichia coli DH1 12706671 YP_006092967.1 CDS EcDH1_3050 NC_017625.1 3275233 3275601 D PFAM: protein of unknown function DUF419; KEGG: sdy:SDY_0492 hypothetical protein; hypothetical protein 3275233..3275601 Escherichia coli DH1 12706672 YP_006092968.1 CDS EcDH1_3051 NC_017625.1 3275695 3276348 D PFAM: nitroreductase; KEGG: sbo:SBO_0439 dihydropteridine reductase; 6,7-dihydropteridine reductase 3275695..3276348 Escherichia coli DH1 12706673 YP_006092969.1 CDS EcDH1_3052 NC_017625.1 3276456 3277703 D PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0528 putative transport; mechanosensitive ion channel protein MscS 3276456..3277703 Escherichia coli DH1 12706674 YP_006092970.1 CDS EcDH1_3053 NC_017625.1 3277784 3279196 R PFAM: amino acid permease-associated region; KEGG: sfv:SFV_0516 phenylalanine transporter; amino acid permease complement(3277784..3279196) Escherichia coli DH1 12706675 YP_006092971.1 CDS EcDH1_3054 NC_017625.1 3279262 3282405 R TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: ssn:SSON_0526 putative inner membrane component for iron transport; CzcA family heavy metal efflux pump complement(3279262..3282405) Escherichia coli DH1 12706676 YP_006092972.1 CDS EcDH1_3055 NC_017625.1 3282417 3283640 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: ssn:SSON_0525 copper/silver efflux system membrane fusion protein CusB; RND family efflux transporter MFP subunit complement(3282417..3283640) Escherichia coli DH1 12706677 YP_006092973.1 CDS EcDH1_3056 NC_017625.1 3283656 3283988 R KEGG: sfv:SFV_0506 periplasmic copper-binding protein; copper-binding protein complement(3283656..3283988) Escherichia coli DH1 12706678 YP_006092974.1 CDS EcDH1_3057 NC_017625.1 3284146 3285519 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ssn:SSON_0523 copper/silver efflux system outer membrane protein CusC; NodT family RND efflux system outer membrane lipoprotein complement(3284146..3285519) Escherichia coli DH1 12706679 YP_006092975.1 CDS EcDH1_3058 NC_017625.1 3285676 3286359 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_0522 DNA-binding response regulator in two-component regulatory system with CusS; two component heavy metal response transcriptional regulator, winged helix family 3285676..3286359 Escherichia coli DH1 12706680 YP_006092976.1 CDS EcDH1_3059 NC_017625.1 3286349 3287791 D KEGG: ssn:SSON_0521 sensor kinase CusS; TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 3286349..3287791 Escherichia coli DH1 12706681 YP_006092977.1 CDS EcDH1_3060 NC_017625.1 3287941 3290178 D PFAM: General secretory system II protein E domain protein; KEGG: sfl:SF0470 bacteriophage N4 adsorption protein B; General secretory system II protein E domain-containing protein 3287941..3290178 Escherichia coli DH1 12706682 YP_006092978.1 CDS EcDH1_3061 NC_017625.1 3290165 3293137 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ssn:SSON_0514 bacteriophage N4 receptor, outer membrane subunit; hypothetical protein 3290165..3293137 Escherichia coli DH1 12706683 YP_006092979.1 CDS EcDH1_3062 NC_017625.1 3293138 3294028 D KEGG: ssn:SSON_0513 hypothetical protein; hypothetical protein 3293138..3294028 Escherichia coli DH1 12706684 YP_006092980.1 CDS EcDH1_3063 NC_017625.1 3294211 3294972 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_0512 envelope protein; AraC family transcriptional regulator 3294211..3294972 Escherichia coli DH1 12706685 YP_006092981.1 CDS EcDH1_3064 NC_017625.1 3295486 3296439 D PFAM: peptidase A26 omptin; KEGG: ses:SARI_01746 outer membrane protease; Plasminogen activator Pla 3295486..3296439 Escherichia coli DH1 12706686 YP_006092982.1 CDS EcDH1_3065 NC_017625.1 3296689 3297438 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbo:SBO_3514 putative AraC-type regulatory protein; AraC family transcriptional regulator complement(3296689..3297438) Escherichia coli DH1 12706687 YP_006092983.1 CDS EcDH1_3067 NC_017625.1 3298383 3298967 D PFAM: Methyltransferase type 12; KEGG: sfv:SFV_2186 unknown protein encoded within prophage; type 12 methyltransferase 3298383..3298967 Escherichia coli DH1 12706689 YP_006092984.1 CDS EcDH1_3068 NC_017625.1 3299022 3299765 R PFAM: tail assembly chaperone gp38; KEGG: sbc:SbBS512_E1479 tail fiber assembly protein; tail assembly chaperone gp38 complement(3299022..3299765) Escherichia coli DH1 12706690 YP_006092985.1 CDS EcDH1_3069 NC_017625.1 3299740 3300285 R PFAM: DNA packaging Nu1; KEGG: ssn:SSON_2431 bacteriophage DNA packaging protein; DNA packaging Nu1 complement(3299740..3300285) Escherichia coli DH1 12706691 YP_006092986.1 CDS EcDH1_3070 NC_017625.1 3301033 3301239 R hypothetical protein complement(3301033..3301239) Escherichia coli DH1 12706692 YP_006092987.1 CDS EcDH1_3071 NC_017625.1 3301525 3301935 D PFAM: protein of unknown function DUF1398; KEGG: ssn:SSON_2432 hypothetical protein; hypothetical protein 3301525..3301935 Escherichia coli DH1 12706693 YP_006092988.1 CDS EcDH1_3072 NC_017625.1 3302226 3302519 D PFAM: Bor family protein; KEGG: eca:ECA2067 lipoprotein; Bor family protein 3302226..3302519 Escherichia coli DH1 12706694 YP_006092989.1 CDS EcDH1_3073 NC_017625.1 3302551 3303012 R PFAM: lysis protein; KEGG: ssn:SSON_2782 endopeptidase-like protein; Phosphoprotein phosphatase complement(3302551..3303012) Escherichia coli DH1 12706695 YP_006092990.1 CDS EcDH1_3074 NC_017625.1 3303009 3303506 R PFAM: glycoside hydrolase family 24; KEGG: ssn:SSON_2783 lysozyme-like protein; lysozyme complement(3303009..3303506) Escherichia coli DH1 12706696 YP_006092991.1 CDS EcDH1_3075 NC_017625.1 3303506 3303721 R PFAM: Lysis S family protein; KEGG: ssn:SSON_2438 hypothetical protein; Lysis S family protein complement(3303506..3303721) Escherichia coli DH1 12706697 YP_006092992.1 CDS EcDH1_3076 NC_017625.1 3304000 3304980 D PFAM: transposase IS4 family protein; transposase IS4 family protein 3304000..3304980 Escherichia coli DH1 12706698 YP_006092993.1 CDS EcDH1_3078 NC_017625.1 3306475 3307107 D PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sfv:SFV_0497 transcriptional regulator FimZ; LuxR family two component transcriptional regulator 3306475..3307107 Escherichia coli DH1 12706701 YP_006092994.1 CDS EcDH1_3079 NC_017625.1 3307110 3307625 R PFAM: Fimbrial protein; KEGG: ssn:SSON_0507 predicted fimbrial-like adhesin protein; Fimbrial protein complement(3307110..3307625) Escherichia coli DH1 12706702 YP_006092995.1 CDS EcDH1_3080 NC_017625.1 3307636 3308613 R KEGG: ssn:SSON_0506 involved in fimbrial asembly; involved in fimbrial asembly complement(3307636..3308613) Escherichia coli DH1 12706703 YP_006092996.1 CDS EcDH1_3081 NC_017625.1 3308655 3311258 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: cko:CKO_02625 hypothetical protein; fimbrial biogenesis outer membrane usher protein complement(3308655..3311258) Escherichia coli DH1 12706704 YP_006092997.1 CDS EcDH1_3082 NC_017625.1 3311289 3311981 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfx:S0470 putative chaperone; Pili assembly chaperone, N-terminal complement(3311289..3311981) Escherichia coli DH1 12706705 YP_006092998.1 CDS EcDH1_3083 NC_017625.1 3312201 3312743 R PFAM: Fimbrial protein; KEGG: sfx:S0469 putative fimbrial-like protein; Fimbrial protein complement(3312201..3312743) Escherichia coli DH1 12706706 YP_006092999.1 CDS EcDH1_3084 NC_017625.1 3313214 3314080 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: sdy:SDY_0281 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase; Methenyltetrahydrofolate cyclohydrolase 3313214..3314080 Escherichia coli DH1 12706707 YP_006093000.1 CDS EcDH1_3085 NC_017625.1 3314082 3314294 D KEGG: sdy:SDY_0280 hypothetical protein; hypothetical protein 3314082..3314294 Escherichia coli DH1 12706708 YP_006093001.1 CDS EcDH1_3086 NC_017625.1 3314402 3314923 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: sbc:SbBS512_E0447 hypothetical protein; membrane-bound metal-dependent hydrolase 3314402..3314923 Escherichia coli DH1 12706709 YP_006093002.1 CDS EcDH1_3087 NC_017625.1 3314959 3316344 R KEGG: sfv:SFV_0484 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; cysteinyl-tRNA synthetase complement(3314959..3316344) Escherichia coli DH1 12706710 YP_006093003.1 CDS EcDH1_3088 NC_017625.1 3316518 3317012 D PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: sfv:SFV_0483 peptidyl-prolyl cis-trans isomerase B (rotamase B); cyclophilin type peptidyl-prolyl cis-trans isomerase 3316518..3317012 Escherichia coli DH1 12706711 YP_006093004.1 CDS EcDH1_3089 NC_017625.1 3317015 3317737 D TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: sbc:SbBS512_E0450 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 3317015..3317737 Escherichia coli DH1 12706712 YP_006093005.1 CDS EcDH1_3090 NC_017625.1 3317855 3318364 D KEGG: sbo:SBO_0420 phosphoribosylaminoimidazole carboxylase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 3317855..3318364 Escherichia coli DH1 12706713 YP_006093006.1 CDS EcDH1_3091 NC_017625.1 3318361 3319428 D KEGG: sfv:SFV_0480 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 3318361..3319428 Escherichia coli DH1 12706714 YP_006093007.1 CDS EcDH1_3092 NC_017625.1 3319623 3320516 R KEGG: ssn:SSON_0497 carbamate kinase; TIGRFAM: carbamate kinase; PFAM: aspartate/glutamate/uridylate kinase; carbamate kinase complement(3319623..3320516) Escherichia coli DH1 12706715 YP_006093008.1 CDS EcDH1_3093 NC_017625.1 3320513 3321328 R KEGG: sbo:SBO_0423 putative carboxylase; putative carboxylase complement(3320513..3321328) Escherichia coli DH1 12706716 YP_006093009.1 CDS EcDH1_3094 NC_017625.1 3321339 3322598 R PFAM: protein of unknown function DUF1116; KEGG: sbc:SbBS512_E0455 hypothetical protein; hypothetical protein complement(3321339..3322598) Escherichia coli DH1 12706717 YP_006093010.1 CDS EcDH1_3095 NC_017625.1 3322608 3324275 R PFAM: FdrA family protein; KEGG: sdy:SDY_0268 membrane protein FdrA; FdrA family protein complement(3322608..3324275) Escherichia coli DH1 12706718 YP_006093011.1 CDS EcDH1_3096 NC_017625.1 3324592 3325641 D TIGRFAM: ureidoglycolate dehydrogenase; PFAM: Malate/L-lactate dehydrogenase; KEGG: pmr:PMI0702 ureidoglycolate dehydrogenase; ureidoglycolate dehydrogenase 3324592..3325641 Escherichia coli DH1 12706719 YP_006093012.1 CDS EcDH1_3097 NC_017625.1 3325663 3326898 D KEGG: sfv:SFV_0477 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; allantoate amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; allantoate amidohydrolase 3325663..3326898 Escherichia coli DH1 12706720 YP_006093013.1 CDS EcDH1_3098 NC_017625.1 3326909 3327694 D TIGRFAM: allantoin catabolism protein; PFAM: protein of unknown function DUF861 cupin_3; Cupin 2 conserved barrel domain protein; KEGG: sfv:SFV_0476 hypothetical protein; allantoin catabolism protein 3326909..3327694 Escherichia coli DH1 12706721 YP_006093014.1 CDS EcDH1_3099 NC_017625.1 3327922 3329067 R PFAM: glycerate kinase; KEGG: kpe:KPK_0993 putative glycerate kinase; glycerate kinase complement(3327922..3329067) Escherichia coli DH1 12706722 YP_006093015.1 CDS EcDH1_3100 NC_017625.1 3329089 3330390 R PFAM: Xanthine/uracil/vitamin C permease; KEGG: pth:PTH_0868 xanthine/uracil permeases; xanthine/uracil/vitamin C permease complement(3329089..3330390) Escherichia coli DH1 12706723 YP_006093016.1 CDS EcDH1_3101 NC_017625.1 3330447 3331808 R TIGRFAM: allantoinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: bld:BLi01126 allantoinase; allantoinase complement(3330447..3331808) Escherichia coli DH1 12706724 YP_006093017.1 CDS EcDH1_3102 NC_017625.1 3331868 3333322 R TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: sea:SeAg_B0568 NCS1 nucleoside transporter family protein; NCS1 nucleoside transporter family complement(3331868..3333322) Escherichia coli DH1 12706725 YP_006093018.1 CDS EcDH1_3103 NC_017625.1 3333491 3334369 R KEGG: set:SEN0500 2-hydroxy-3-oxopropionate reductase; TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 2-hydroxy-3-oxopropionate reductase complement(3333491..3334369) Escherichia coli DH1 12706726 YP_006093019.1 CDS EcDH1_3104 NC_017625.1 3334469 3335245 R KEGG: ssn:SSON_0503 hydroxypyruvate isomerase; TIGRFAM: hydroxypyruvate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase complement(3334469..3335245) Escherichia coli DH1 12706727 YP_006093020.1 CDS EcDH1_3105 NC_017625.1 3335258 3337039 R TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: sbc:SbBS512_E0441 glyoxylate carboligase; glyoxylate carboligase complement(3335258..3337039) Escherichia coli DH1 12706728 YP_006093021.1 CDS EcDH1_3106 NC_017625.1 3337129 3337944 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sbo:SBO_0410 DNA-binding transcriptional repressor; IclR family transcriptional regulator complement(3337129..3337944) Escherichia coli DH1 12706729 YP_006093022.1 CDS EcDH1_3107 NC_017625.1 3338022 3338504 R PFAM: Ureidoglycolate hydrolase; KEGG: sdy:SDY_0397 ureidoglycolate hydrolase; ureidoglycolate hydrolase complement(3338022..3338504) Escherichia coli DH1 12706730 YP_006093023.1 CDS EcDH1_3108 NC_017625.1 3338734 3339660 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_0398 DNA-binding transcriptional activator of the AllD operon; LysR family transcriptional regulator 3338734..3339660 Escherichia coli DH1 12706731 YP_006093024.1 CDS EcDH1_3109 NC_017625.1 3339729 3340823 D TIGRFAM: tRNA 2-selenouridine synthase; SMART: Rhodanese domain protein; KEGG: sdy:SDY_0399 tRNA 2-selenouridine synthase; tRNA 2-selenouridine synthase 3339729..3340823 Escherichia coli DH1 12706732 YP_006093025.1 CDS EcDH1_3110 NC_017625.1 3340939 3341310 D KEGG: sdy:SDY_0400 hypothetical protein; hypothetical protein 3340939..3341310 Escherichia coli DH1 12706733 YP_006093026.1 CDS EcDH1_3111 NC_017625.1 3342296 3343006 R PFAM: RHS protein; KEGG: sbo:SBO_0401 putative protein in rhs element; RHS protein complement(3342296..3343006) Escherichia coli DH1 12706734 YP_006093027.1 CDS EcDH1_3112 NC_017625.1 3343006 3343374 R KEGG: fjo:Fjoh_2679 hypothetical protein; hypothetical protein complement(3343006..3343374) Escherichia coli DH1 12706735 YP_006093028.1 CDS EcDH1_3113 NC_017625.1 3343414 3347694 R TIGRFAM: YD repeat protein; PFAM: RHS protein; YD repeat-containing protein; KEGG: aav:Aave_3712 YD repeat protein; YD repeat protein complement(3343414..3347694) Escherichia coli DH1 12706736 YP_006093029.1 CDS EcDH1_3114 NC_017625.1 3348125 3350539 R PFAM: protein of unknown function DUF214; KEGG: ssn:SSON_0485 putative oxidoreductase; hypothetical protein complement(3348125..3350539) Escherichia coli DH1 12706737 YP_006093030.1 CDS EcDH1_3115 NC_017625.1 3350536 3351222 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E0430 ABC transporter, ATP-binding protein; ABC transporter complement(3350536..3351222) Escherichia coli DH1 12706738 YP_006093031.1 CDS EcDH1_3116 NC_017625.1 3351223 3351816 D PFAM: lipolytic protein G-D-S-L family; KEGG: sbc:SbBS512_E0429 acyl-CoA thioesterase I; lysophospholipase 3351223..3351816 Escherichia coli DH1 12706739 YP_006093032.1 CDS EcDH1_3117 NC_017625.1 3351845 3352615 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ssn:SSON_0482 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 3351845..3352615 Escherichia coli DH1 12706740 YP_006093033.1 CDS EcDH1_3118 NC_017625.1 3352676 3353530 D PFAM: Thioredoxin domain; KEGG: sdy:SDY_0407 putative thioredoxin-like protein; Thioredoxin domain protein 3352676..3353530 Escherichia coli DH1 12706741 YP_006093034.1 CDS EcDH1_3119 NC_017625.1 3353593 3354372 R PFAM: conserved hypothetical protein; KEGG: ssn:SSON_0480 putative metal resistance protein; hypothetical protein complement(3353593..3354372) Escherichia coli DH1 12706742 YP_006093035.1 CDS EcDH1_3120 NC_017625.1 3354359 3355036 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sbc:SbBS512_E0425 ABC transporter, ATP-binding protein; ABC transporter complement(3354359..3355036) Escherichia coli DH1 12706743 YP_006093036.1 CDS EcDH1_3121 NC_017625.1 3355182 3356099 D PFAM: band 7 protein; KEGG: sbo:SBO_0391 putative protease; hypothetical protein 3355182..3356099 Escherichia coli DH1 12706744 YP_006093037.1 CDS EcDH1_3122 NC_017625.1 3356096 3356554 D PFAM: protein of unknown function DUF107; KEGG: sbc:SbBS512_E0423 nodulation efficiency family protein; hypothetical protein 3356096..3356554 Escherichia coli DH1 12706745 YP_006093038.1 CDS EcDH1_3123 NC_017625.1 3356555 3356962 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sbc:SbBS512_E0422 Cu(I)-responsive transcriptional regulator; MerR family transcriptional regulator complement(3356555..3356962) Escherichia coli DH1 12706746 YP_006093039.1 CDS EcDH1_3124 NC_017625.1 3357087 3358379 R PFAM: Spore germination protein; amino acid permease-associated region; KEGG: ssn:SSON_0475 putative amino acid/amine transport protein; amino acid permease complement(3357087..3358379) Escherichia coli DH1 12706747 YP_006093040.1 CDS EcDH1_3125 NC_017625.1 3358382 3359314 R PFAM: Glutaminase, core; KEGG: ssn:SSON_0474 glutaminase; Glutaminase complement(3358382..3359314) Escherichia coli DH1 12706748 YP_006093041.1 CDS EcDH1_3126 NC_017625.1 3359576 3362080 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sfv:SFV_0457 copper exporting ATPase; copper-translocating P-type ATPase 3359576..3362080 Escherichia coli DH1 12706749 YP_006093042.1 CDS EcDH1_3127 NC_017625.1 3362396 3362791 R TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E0418 addiction module antidote protein, HigA family; plasmid maintenance system antidote protein complement(3362396..3362791) Escherichia coli DH1 12706750 YP_006093043.1 CDS EcDH1_3128 NC_017625.1 3362875 3363669 D PFAM: GumN family protein; KEGG: sfv:SFV_0455 putative ligase; GumN family protein 3362875..3363669 Escherichia coli DH1 12706751 YP_006093044.1 CDS EcDH1_3129 NC_017625.1 3363873 3364352 D TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: sfv:SFV_0454 hypothetical protein; ybaK/ebsC protein 3363873..3364352 Escherichia coli DH1 12706752 YP_006093045.1 CDS EcDH1_3130 NC_017625.1 3364389 3366041 R PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sbo:SBO_0382 bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; 5'-nucleotidase complement(3364389..3366041) Escherichia coli DH1 12706753 YP_006093046.1 CDS EcDH1_3131 NC_017625.1 3366259 3367479 D PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0431 fosmidomycin resistance protein; major facilitator superfamily protein 3366259..3367479 Escherichia coli DH1 12706754 YP_006093047.1 CDS EcDH1_3132 NC_017625.1 3367717 3369393 D TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sbo:SBO_0378 putative cation:proton antiport protein; potassium efflux system protein 3367717..3369393 Escherichia coli DH1 12706755 YP_006093048.1 CDS EcDH1_3133 NC_017625.1 3369526 3370830 R PFAM: PfkB domain protein; KEGG: sbc:SbBS512_E0409 inosine kinase; Inosine kinase complement(3369526..3370830) Escherichia coli DH1 12706756 YP_006093049.1 CDS EcDH1_3134 NC_017625.1 3370982 3371941 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: ssn:SSON_0463 acetyl esterase; Alpha/beta hydrolase fold-3 domain-containing protein 3370982..3371941 Escherichia coli DH1 12706757 YP_006093050.1 CDS EcDH1_3135 NC_017625.1 3371938 3372900 R PFAM: ferrochelatase; KEGG: sdy:SDY_0444 ferrochelatase; ferrochelatase complement(3371938..3372900) Escherichia coli DH1 12706758 YP_006093051.1 CDS EcDH1_3136 NC_017625.1 3373136 3373780 R PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: sbc:SbBS512_E0406 adenylate kinase; Nucleoside-triphosphate--adenylate kinase complement(3373136..3373780) Escherichia coli DH1 12706759 YP_006093052.1 CDS EcDH1_3137 NC_017625.1 3373961 3375835 R PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: sbo:SBO_0373 heat shock protein 90; heat shock protein Hsp90 complement(3373961..3375835) Escherichia coli DH1 12706760 YP_006093053.1 CDS EcDH1_3138 NC_017625.1 3375945 3376550 R KEGG: sbc:SbBS512_E0404 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR complement(3375945..3376550) Escherichia coli DH1 12706761 YP_006093054.1 CDS EcDH1_3139 NC_017625.1 3376550 3376879 R PFAM: conserved hypothetical protein; KEGG: sdy:SDY_0448 hypothetical protein; hypothetical protein complement(3376550..3376879) Escherichia coli DH1 12706762 YP_006093055.1 CDS EcDH1_3140 NC_017625.1 3376932 3378863 R KEGG: sbc:SbBS512_E0402 DNA polymerase III, tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau complement(3376932..3378863) Escherichia coli DH1 12706763 YP_006093056.1 CDS EcDH1_3141 NC_017625.1 3378992 3379543 R TIGRFAM: adenine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: sdy:SDY_0450 adenine phosphoribosyltransferase; adenine phosphoribosyltransferase complement(3378992..3379543) Escherichia coli DH1 12706764 YP_006093057.1 CDS EcDH1_3142 NC_017625.1 3379696 3380073 R PFAM: protein of unknown function DUF454; KEGG: sdy:SDY_0451 hypothetical protein; hypothetical protein complement(3379696..3380073) Escherichia coli DH1 12706765 YP_006093058.1 CDS EcDH1_3143 NC_017625.1 3380143 3380670 D PFAM: Primosomal replication priB and priC; KEGG: sbc:SbBS512_E0399 primosomal replication protein N''; primosomal replication priB and priC 3380143..3380670 Escherichia coli DH1 12706766 YP_006093059.1 CDS EcDH1_3144 NC_017625.1 3380684 3380845 D KEGG: sbc:SbBS512_E0398 hypothetical protein; hypothetical protein 3380684..3380845 Escherichia coli DH1 12706767 YP_006093060.1 CDS EcDH1_3145 NC_017625.1 3381057 3384419 R PFAM: MscS Mechanosensitive ion channel; KEGG: ssn:SSON_0452 potassium efflux protein KefA; mechanosensitive ion channel protein MscS complement(3381057..3384419) Escherichia coli DH1 12706768 YP_006093061.1 CDS EcDH1_3146 NC_017625.1 3384547 3385194 R PFAM: regulatory protein TetR; Tetracycline transcriptional repressor MAATS-type domain protein; KEGG: sdy:SDY_0455 DNA-binding transcriptional repressor; TetR family transcriptional regulator complement(3384547..3385194) Escherichia coli DH1 12706769 YP_006093062.1 CDS EcDH1_3147 NC_017625.1 3385336 3386529 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: sbc:SbBS512_E0395 acriflavine resistance protein A; RND family efflux transporter MFP subunit 3385336..3386529 Escherichia coli DH1 12706770 YP_006093063.1 CDS EcDH1_3148 NC_017625.1 3386552 3389701 D TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sbo:SBO_0362 acridine efflux pump; hydrophobe/amphiphile efflux-1 (HAE1) family transporter 3386552..3389701 Escherichia coli DH1 12706771 YP_006093064.1 CDS EcDH1_3149 NC_017625.1 3390247 3390621 D KEGG: sdy:SDY_0458 hypothetical protein; hypothetical protein 3390247..3390621 Escherichia coli DH1 12706772 YP_006093065.1 CDS EcDH1_3150 NC_017625.1 3390647 3390865 D PFAM: Haemolysin expression modulating family protein; KEGG: sdy:SDY_0459 hemolysin expression-modulating protein; hemolysin expression modulating family protein 3390647..3390865 Escherichia coli DH1 12706773 YP_006093066.1 CDS EcDH1_3151 NC_017625.1 3391037 3391588 D PFAM: transferase hexapeptide repeat containing protein; KEGG: sdy:SDY_0460 maltose O-acetyltransferase; transferase hexapeptide repeat containing protein 3391037..3391588 Escherichia coli DH1 12706774 YP_006093067.1 CDS EcDH1_3152 NC_017625.1 3391704 3392174 D KEGG: sdy:SDY_0461 hypothetical protein; hypothetical protein 3391704..3392174 Escherichia coli DH1 12706775 YP_006093068.1 CDS EcDH1_3153 NC_017625.1 3392338 3393888 D PFAM: EAL domain protein; KEGG: sfv:SFV_0431 hypothetical protein; EAL domain-containing protein 3392338..3393888 Escherichia coli DH1 12706776 YP_006093069.1 CDS EcDH1_3154 NC_017625.1 3393930 3394283 R PFAM: protein of unknown function DUF1428; KEGG: sdy:SDY_0392 hypothetical protein; hypothetical protein complement(3393930..3394283) Escherichia coli DH1 12706777 YP_006093070.1 CDS EcDH1_3155 NC_017625.1 3394662 3394973 D TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: sdy:SDY_0391 hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 3394662..3394973 Escherichia coli DH1 12706779 YP_006093071.1 CDS EcDH1_3156 NC_017625.1 3395004 3395576 R KEGG: sfv:SFV_0427 hypothetical protein; hypothetical protein complement(3395004..3395576) Escherichia coli DH1 12706780 YP_006093072.1 CDS EcDH1_3157 NC_017625.1 3395794 3396654 D KEGG: ssn:SSON_0440 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 3395794..3396654 Escherichia coli DH1 12706781 YP_006093073.1 CDS EcDH1_3158 NC_017625.1 3396703 3397989 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: ssn:SSON_0439 ammonium transporter; ammonium transporter complement(3396703..3397989) Escherichia coli DH1 12706782 YP_006093074.1 CDS EcDH1_3159 NC_017625.1 3398019 3398357 R PFAM: nitrogen regulatory protein P-II; KEGG: sdy:SDY_0387 nitrogen regulatory protein P-II 2; nitrogen regulatory protein P-II complement(3398019..3398357) Escherichia coli DH1 12706783 YP_006093075.1 CDS EcDH1_3160 NC_017625.1 3398538 3400319 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sbo:SBO_0344 putative multidrug transporter membrane\ATP-binding components; ABC transporter complement(3398538..3400319) Escherichia coli DH1 12706784 YP_006093076.1 CDS EcDH1_3161 NC_017625.1 3400312 3402084 R PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0385 putative multidrug transporter membrane\ATP-binding components; ABC transporter complement(3400312..3402084) Escherichia coli DH1 12706785 YP_006093077.1 CDS EcDH1_3162 NC_017625.1 3402114 3402572 R PFAM: regulatory protein AsnC/Lrp family; KEGG: sbc:SbBS512_E0370 transcriptional regulator, AsnC family; AsnC family transcriptional regulator complement(3402114..3402572) Escherichia coli DH1 12706786 YP_006093078.1 CDS EcDH1_3163 NC_017625.1 3402725 3403543 R TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: sbc:SbBS512_E0369 hydrolase Cof; cof family hydrolase complement(3402725..3403543) Escherichia coli DH1 12706787 YP_006093079.1 CDS EcDH1_3164 NC_017625.1 3403643 3405343 D PFAM: extracellular solute-binding protein family 5; KEGG: sbc:SbBS512_E0368 bacterial extracellular solute-binding protein, family 5; family 5 extracellular solute-binding protein 3403643..3405343 Escherichia coli DH1 12706788 YP_006093080.1 CDS EcDH1_3165 NC_017625.1 3405408 3406103 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: sbc:SbBS512_E0367 queuosine biosynthesis protein QueC; exsB protein 3405408..3406103 Escherichia coli DH1 12706789 YP_006093081.1 CDS EcDH1_3166 NC_017625.1 3406155 3406553 R PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E0366 thioesterase family protein; thioesterase superfamily protein complement(3406155..3406553) Escherichia coli DH1 12706790 YP_006093082.1 CDS EcDH1_3167 NC_017625.1 3406647 3407018 R TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: sbc:SbBS512_E0365 competence protein ComEA; competence protein ComEA complement(3406647..3407018) Escherichia coli DH1 12706791 YP_006093083.1 CDS EcDH1_3168 NC_017625.1 3407169 3409040 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbo:SBO_0335 peptidyl-prolyl cis-trans isomerase (rotamase D); PpiC-type peptidyl-prolyl cis-trans isomerase complement(3407169..3409040) Escherichia coli DH1 12706792 YP_006093084.1 CDS EcDH1_3169 NC_017625.1 3409232 3409504 R PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_0292 transcriptional regulator HU subunit beta; histone family protein DNA-binding protein complement(3409232..3409504) Escherichia coli DH1 12706793 YP_006093085.1 CDS EcDH1_3170 NC_017625.1 3409713 3412067 R KEGG: ssn:SSON_0422 DNA-binding ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La complement(3409713..3412067) Escherichia coli DH1 12706794 YP_006093086.1 CDS EcDH1_3171 NC_017625.1 3412255 3413529 R KEGG: sdy:SDY_0294 ATP-dependent protease ATP-binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: zinc finger C4 domain protein; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpX complement(3412255..3413529) Escherichia coli DH1 12706795 YP_006093087.1 CDS EcDH1_3172 NC_017625.1 3413655 3414278 R KEGG: sdy:SDY_0295 ATP-dependent Clp protease proteolytic subunit; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP; ATP-dependent Clp protease, proteolytic subunit ClpP complement(3413655..3414278) Escherichia coli DH1 12706796 YP_006093088.1 CDS EcDH1_3173 NC_017625.1 3414524 3415822 R TIGRFAM: trigger factor; PFAM: peptidylprolyl isomerase FKBP-type; trigger factor domain protein; trigger factor domain; KEGG: ssn:SSON_0419 trigger factor; trigger factor complement(3414524..3415822) Escherichia coli DH1 12706797 YP_006093089.1 CDS EcDH1_3174 NC_017625.1 3416166 3416480 R PFAM: BolA family protein; KEGG: sdy:SDY_0298 transcriptional regulator BolA; BolA family protein complement(3416166..3416480) Escherichia coli DH1 12706798 YP_006093090.1 CDS EcDH1_3175 NC_017625.1 3416788 3417366 D PFAM: Uncharacterized lipoprotein; KEGG: ssn:SSON_0417 hypothetical protein; lipoprotein 3416788..3417366 Escherichia coli DH1 12706799 YP_006093091.1 CDS EcDH1_3176 NC_017625.1 3417410 3418885 D TIGRFAM: AmpG-related permease; PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_0300 muropeptide transporter; AmpG-related permease 3417410..3418885 Escherichia coli DH1 12706800 YP_006093092.1 CDS EcDH1_3177 NC_017625.1 3419345 3420292 D TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; COX aromatic rich domain protein; KEGG: sbo:SBO_0326 cytochrome o ubiquinol oxidase subunit II; ubiquinol oxidase subunit II 3419345..3420292 Escherichia coli DH1 12706801 YP_006093093.1 CDS EcDH1_3178 NC_017625.1 3420314 3422305 D KEGG: ssn:SSON_0414 cytochrome o ubiquinol oxidase subunit I; TIGRFAM: cytochrome o ubiquinol oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome o ubiquinol oxidase subunit I 3420314..3422305 Escherichia coli DH1 12706802 YP_006093094.1 CDS EcDH1_3179 NC_017625.1 3422295 3422909 D TIGRFAM: cytochrome o ubiquinol oxidase, subunit III; PFAM: cytochrome c oxidase subunit III; KEGG: ssn:SSON_0413 cytochrome o ubiquinol oxidase subunit III; cytochrome o ubiquinol oxidase subunit III 3422295..3422909 Escherichia coli DH1 12706803 YP_006093095.1 CDS EcDH1_3180 NC_017625.1 3422909 3423238 D TIGRFAM: cytochrome o ubiquinol oxidase subunit IV; PFAM: cytochrome C oxidase subunit IV; KEGG: sbo:SBO_0323 cytochrome o ubiquinol oxidase subunit IV; cytochrome o ubiquinol oxidase subunit IV 3422909..3423238 Escherichia coli DH1 12706804 YP_006093096.1 CDS EcDH1_3181 NC_017625.1 3423250 3424140 D TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: sbo:SBO_0322 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase 3423250..3424140 Escherichia coli DH1 12706805 YP_006093097.1 CDS EcDH1_3182 NC_017625.1 3424289 3425653 D PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_0303 putative transport protein; major facilitator superfamily protein 3424289..3425653 Escherichia coli DH1 12706806 YP_006093098.1 CDS EcDH1_3183 NC_017625.1 3425781 3426272 R PFAM: protein of unknown function DUF520; KEGG: sbc:SbBS512_E0348 hypothetical protein; hypothetical protein complement(3425781..3426272) Escherichia coli DH1 12706807 YP_006093099.1 CDS EcDH1_3184 NC_017625.1 3426440 3427351 D KEGG: ssn:SSON_0402 2-dehydropantoate 2-reductase; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; 2-dehydropantoate 2-reductase 3426440..3427351 Escherichia coli DH1 12706808 YP_006093100.1 CDS EcDH1_3185 NC_017625.1 3427314 3427904 D TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: sbc:SbBS512_E0346 protein ThiJ; DJ-1 family protein 3427314..3427904 Escherichia coli DH1 12706809 YP_006093101.1 CDS EcDH1_3186 NC_017625.1 3427958 3429406 R TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; THUMP domain protein; KEGG: sfv:SFV_0388 thiamine biosynthesis protein ThiI; thiamine biosynthesis/tRNA modification protein ThiI complement(3427958..3429406) Escherichia coli DH1 12706810 YP_006093102.1 CDS EcDH1_3187 NC_017625.1 3429612 3429854 D TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: sdy:SDY_0308 exodeoxyribonuclease VII small subunit; exodeoxyribonuclease VII small subunit 3429612..3429854 Escherichia coli DH1 12706811 YP_006093103.1 CDS EcDH1_3188 NC_017625.1 3429854 3430753 D PFAM: Polyprenyl synthetase; KEGG: sdy:SDY_0309 geranyltranstransferase; polyprenyl synthetase 3429854..3430753 Escherichia coli DH1 12706812 YP_006093104.1 CDS EcDH1_3189 NC_017625.1 3430778 3432640 D TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: sbc:SbBS512_E0341 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 3430778..3432640 Escherichia coli DH1 12706813 YP_006093105.1 CDS EcDH1_3190 NC_017625.1 3432820 3433794 D PFAM: aldo/keto reductase; KEGG: sbc:SbBS512_E0340 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 3432820..3433794 Escherichia coli DH1 12706814 YP_006093106.1 CDS EcDH1_3191 NC_017625.1 3433848 3434366 R PFAM: phosphatidylglycerophosphatase A; KEGG: sbc:SbBS512_E0339 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A complement(3433848..3434366) Escherichia coli DH1 12706815 YP_006093107.1 CDS EcDH1_3192 NC_017625.1 3434344 3435321 R KEGG: sbc:SbBS512_E0338 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(3434344..3435321) Escherichia coli DH1 12706816 YP_006093108.1 CDS EcDH1_3193 NC_017625.1 3435399 3435818 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: sdy:SDY_0318 transcription antitermination protein NusB; NusB antitermination factor complement(3435399..3435818) Escherichia coli DH1 12706817 YP_006093109.1 CDS EcDH1_3194 NC_017625.1 3435838 3436308 R KEGG: kpn:KPN_00367 riboflavin synthase subunit beta; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(3435838..3436308) Escherichia coli DH1 12706818 YP_006093110.1 CDS EcDH1_3195 NC_017625.1 3436397 3437500 R KEGG: sbc:SbBS512_E0335 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD complement(3436397..3437500) Escherichia coli DH1 12706819 YP_006093111.1 CDS EcDH1_3196 NC_017625.1 3437504 3437953 R PFAM: ATP-cone domain protein; KEGG: sdy:SDY_0321 hypothetical protein; ATP-cone domain-containing protein complement(3437504..3437953) Escherichia coli DH1 12706820 YP_006093112.1 CDS EcDH1_3197 NC_017625.1 3438104 3438643 D KEGG: ssn:SSON_0389 hypothetical protein; hypothetical protein 3438104..3438643 Escherichia coli DH1 12706821 YP_006093113.1 CDS EcDH1_3198 NC_017625.1 3438942 3439826 D PFAM: nucleoside-specific channel-forming protein Tsx; KEGG: sdy:SDY_0323 nucleoside channel; nucleoside-specific channel-forming protein Tsx 3438942..3439826 Escherichia coli DH1 12706822 YP_006093114.1 CDS EcDH1_3199 NC_017625.1 3440003 3440350 R PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sdy:SDY_0324 hypothetical protein; HNH endonuclease complement(3440003..3440350) Escherichia coli DH1 12706823 YP_006093115.1 CDS EcDH1_3200 NC_017625.1 3440479 3441450 R TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sbc:SbBS512_E0328 protein-export membrane protein SecF; protein-export membrane protein SecF complement(3440479..3441450) Escherichia coli DH1 12706824 YP_006093116.1 CDS EcDH1_3201 NC_017625.1 3441461 3443275 R TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: sdy:SDY_0326 preprotein translocase subunit SecD; protein-export membrane protein SecD complement(3441461..3443275) Escherichia coli DH1 12706825 YP_006093117.1 CDS EcDH1_3202 NC_017625.1 3443336 3443668 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sdy:SDY_0327 preprotein translocase subunit YajC; preprotein translocase subunit YajC complement(3443336..3443668) Escherichia coli DH1 12706826 YP_006093118.1 CDS EcDH1_3203 NC_017625.1 3443691 3444818 R KEGG: sdy:SDY_0328 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase complement(3443691..3444818) Escherichia coli DH1 12706827 YP_006093119.1 CDS EcDH1_3204 NC_017625.1 3444874 3445944 R TIGRFAM: S-adenosylmethionine/tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: sdy:SDY_0329 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase complement(3444874..3445944) Escherichia coli DH1 12706828 YP_006093120.1 CDS EcDH1_3205 NC_017625.1 3446037 3446618 D PFAM: protein of unknown function DUF479; KEGG: ssn:SSON_0381 acyl carrier protein phosphodiesterase; ACP phosphodiesterase 3446037..3446618 Escherichia coli DH1 12706829 YP_006093121.1 CDS EcDH1_3206 NC_017625.1 3446623 3448440 R PFAM: glycoside hydrolase family 13 domain protein Ig domain protein region domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: sfx:S0348 maltodextrin glucosidase; alpha amylase complement(3446623..3448440) Escherichia coli DH1 12706830 YP_006093122.1 CDS EcDH1_3207 NC_017625.1 3448596 3449969 R PFAM: amino acid permease-associated region; KEGG: sdy:SDY_0335 proline permease transport protein; amino acid permease complement(3448596..3449969) Escherichia coli DH1 12706831 YP_006093123.1 CDS EcDH1_3208 NC_017625.1 3450045 3451364 R PFAM: branched-chain amino acid transport system II carrier protein; KEGG: sdy:SDY_0336 branched chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein complement(3450045..3451364) Escherichia coli DH1 12706832 YP_006093124.1 CDS EcDH1_3209 NC_017625.1 3451771 3453066 R KEGG: sbo:SBO_0294 phosphate regulon sensor protein; TIGRFAM: PAS sensor protein; phosphate regulon sensor kinase PhoR; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(3451771..3453066) Escherichia coli DH1 12706833 YP_006093125.1 CDS EcDH1_3210 NC_017625.1 3453124 3453813 R TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbc:SbBS512_E0318 phosphate regulon transcriptional regulatory protein PhoB; winged helix family two component transcriptional regulator PhoB complement(3453124..3453813) Escherichia coli DH1 12706834 YP_006093126.1 CDS EcDH1_3211 NC_017625.1 3454003 3455205 D TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: ssn:SSON_0375 exonuclease subunit SbcD; nuclease SbcCD subunit D 3454003..3455205 Escherichia coli DH1 12706835 YP_006093127.1 CDS EcDH1_3212 NC_017625.1 3455202 3458348 D TIGRFAM: exonuclease SbcC; PFAM: SMC domain protein; KEGG: sfv:SFV_0362 exonuclease subunit SbcC; exonuclease SbcC 3455202..3458348 Escherichia coli DH1 12706836 YP_006093128.1 CDS EcDH1_3213 NC_017625.1 3458390 3459658 D PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E0315 protein AraJ; major facilitator superfamily protein 3458390..3459658 Escherichia coli DH1 12706837 YP_006093129.1 CDS EcDH1_3214 NC_017625.1 3459903 3460811 R PFAM: ROK family protein; KEGG: ssn:SSON_0371 fructokinase; ROK family protein complement(3459903..3460811) Escherichia coli DH1 12706838 YP_006093130.1 CDS EcDH1_3215 NC_017625.1 3460870 3461847 D PFAM: putative exonuclease RdgC; KEGG: cko:CKO_02778 recombination associated protein; putative exonuclease RdgC 3460870..3461847 Escherichia coli DH1 12706839 YP_006093131.1 CDS EcDH1_3216 NC_017625.1 3462208 3462327 D KEGG: sbc:SbBS512_E0309 hypothetical protein; hypothetical protein 3462208..3462327 Escherichia coli DH1 12706840 YP_006093132.1 CDS EcDH1_3217 NC_017625.1 3462494 3462778 R PFAM: protein of unknown function DUF1255; KEGG: sbc:SbBS512_E0308 hypothetical protein; hypothetical protein complement(3462494..3462778) Escherichia coli DH1 12706841 YP_006093133.1 CDS EcDH1_3218 NC_017625.1 3462850 3463527 R PFAM: AroM family protein; KEGG: sbc:SbBS512_E0307 AroM protein; AroM family protein complement(3462850..3463527) Escherichia coli DH1 12706842 YP_006093134.1 CDS EcDH1_3219 NC_017625.1 3463785 3463976 R KEGG: sbc:SbBS512_E0306 hypothetical protein; hypothetical protein complement(3463785..3463976) Escherichia coli DH1 12706843 YP_006093135.1 CDS EcDH1_3220 NC_017625.1 3464026 3464550 R PFAM: shikimate kinase; KEGG: sbo:SBO_0283 shikimate kinase II; shikimate kinase complement(3464026..3464550) Escherichia coli DH1 12706844 YP_006093136.1 CDS EcDH1_3221 NC_017625.1 3464733 3465191 R PFAM: protein of unknown function DUF188; KEGG: sdy:SDY_0357 hypothetical protein; hypothetical protein complement(3464733..3465191) Escherichia coli DH1 12706845 YP_006093137.1 CDS EcDH1_3222 NC_017625.1 3465311 3466120 D KEGG: sfx:S0330 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; pyrroline-5-carboxylate reductase 3465311..3466120 Escherichia coli DH1 12706846 YP_006093138.1 CDS EcDH1_3223 NC_017625.1 3466137 3467252 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE2 domain protein; KEGG: sdy:SDY_0358 hypothetical protein; diguanylate cyclase complement(3466137..3467252) Escherichia coli DH1 12706847 YP_006093139.1 CDS EcDH1_3224 NC_017625.1 3467354 3467674 R PFAM: PsiF repeat protein; KEGG: sbc:SbBS512_E0301 phosphate starvation-inducible protein PsiF; PsiF repeat protein complement(3467354..3467674) Escherichia coli DH1 12706848 YP_006093140.1 CDS EcDH1_3225 NC_017625.1 3467793 3469208 R PFAM: Alkaline phosphatase; KEGG: sbo:SBO_0278 bacterial alkaline phosphatase; alkaline phosphatase complement(3467793..3469208) Escherichia coli DH1 12706849 YP_006093141.1 CDS EcDH1_3226 NC_017625.1 3469309 3469569 R KEGG: ssn:SSON_0357 hypothetical protein; hypothetical protein complement(3469309..3469569) Escherichia coli DH1 12706850 YP_006093142.1 CDS EcDH1_3227 NC_017625.1 3470032 3471126 D KEGG: sfx:S0254 D-alanyl-alanine synthetase A; TIGRFAM: D-alanine/D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3470032..3471126 Escherichia coli DH1 12706851 YP_006093143.1 CDS EcDH1_3228 NC_017625.1 3471150 3471362 R KEGG: sdy:SDY_0366 hypothetical protein; hypothetical protein complement(3471150..3471362) Escherichia coli DH1 12706852 YP_006093144.1 CDS EcDH1_3229 NC_017625.1 3471622 3471930 D KEGG: sbc:SbBS512_E0296 hypothetical protein; hypothetical protein 3471622..3471930 Escherichia coli DH1 12706853 YP_006093145.1 CDS EcDH1_3230 NC_017625.1 3471989 3473083 R PFAM: protein of unknown function DUF1615; KEGG: sdy:SDY_0368 hypothetical protein; hypothetical protein complement(3471989..3473083) Escherichia coli DH1 12706854 YP_006093146.1 CDS EcDH1_3231 NC_017625.1 3473096 3474316 R PFAM: SbmABacA family protein; ABC transporter domain protein; KEGG: sdy:SDY_0369 transport protein; SbmABacA family protein complement(3473096..3474316) Escherichia coli DH1 12706855 YP_006093147.1 CDS EcDH1_3232 NC_017625.1 3474521 3474622 D hypothetical protein 3474521..3474622 Escherichia coli DH1 12706856 YP_006093148.1 CDS EcDH1_3233 NC_017625.1 3474668 3475825 D PFAM: beta-lactamase; KEGG: sbc:SbBS512_E0293 penicillin-binding protein AmpH; beta-lactamase 3474668..3475825 Escherichia coli DH1 12706857 YP_006093149.1 CDS EcDH1_3234 NC_017625.1 3475826 3476449 R KEGG: ssn:SSON_0350 putative DNA-binding transcriptional regulator; Crp family transcriptional regulator complement(3475826..3476449) Escherichia coli DH1 12706858 YP_006093150.1 CDS EcDH1_3236 NC_017625.1 3478054 3478353 D PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein 3478054..3478353 Escherichia coli DH1 12706860 YP_006093151.1 CDS EcDH1_3237 NC_017625.1 3478350 3479216 D PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit 3478350..3479216 Escherichia coli DH1 12706861 YP_006093152.1 CDS EcDH1_3238 NC_017625.1 3481228 3482202 D PFAM: delta-aminolevulinic acid dehydratase; KEGG: sdy:SDY_0501 delta-aminolevulinic acid dehydratase; porphobilinogen synthase 3481228..3482202 Escherichia coli DH1 12706862 YP_006093153.1 CDS EcDH1_3239 NC_017625.1 3482309 3483160 R PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: ssn:SSON_0346 taurine dioxygenase; taurine dioxygenase complement(3482309..3483160) Escherichia coli DH1 12706863 YP_006093154.1 CDS EcDH1_3240 NC_017625.1 3483157 3483984 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_0331 taurine transporter subunit; binding-protein-dependent transport system inner membrane protein complement(3483157..3483984) Escherichia coli DH1 12706864 YP_006093155.1 CDS EcDH1_3241 NC_017625.1 3483981 3484748 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0344 taurine transporter ATP-binding subunit; ABC transporter complement(3483981..3484748) Escherichia coli DH1 12706865 YP_006093156.1 CDS EcDH1_3242 NC_017625.1 3484761 3485723 R KEGG: ssn:SSON_0343 taurine transporter substrate binding subunit; TIGRFAM: taurine ABC transporter, periplasmic binding protein; PFAM: Substrate-binding region of ABC-type glycine betaine transport system; SMART: extracellular solute-binding protein family 3; taurine ABC transporter substrate-binding protein complement(3484761..3485723) Escherichia coli DH1 12706866 YP_006093157.1 CDS EcDH1_3244 NC_017625.1 3487020 3488216 D PFAM: glycosyl transferase family 2; KEGG: sml:Smlt0216 putative transmembrane glycosyl transferase; family 2 glycosyl transferase 3487020..3488216 Escherichia coli DH1 12706868 YP_006093158.1 CDS EcDH1_3245 NC_017625.1 3488376 3489281 R PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit complement(3488376..3489281) Escherichia coli DH1 12706869 YP_006093159.1 CDS EcDH1_3246 NC_017625.1 3489239 3489604 R PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein complement(3489239..3489604) Escherichia coli DH1 12706870 YP_006093160.1 CDS EcDH1_3247 NC_017625.1 3489668 3490111 D KEGG: sbc:SbBS512_E0275 putative acyltransferase; putative acyltransferase 3489668..3490111 Escherichia coli DH1 12706871 YP_006093161.1 CDS EcDH1_3248 NC_017625.1 3490113 3490886 D KEGG: sbc:SbBS512_E0274 hypothetical protein; hypothetical protein 3490113..3490886 Escherichia coli DH1 12706872 YP_006093162.1 CDS EcDH1_3249 NC_017625.1 3491074 3491349 D PFAM: protein of unknown function DUF156; KEGG: sbc:SbBS512_E0272 hypothetical protein; hypothetical protein 3491074..3491349 Escherichia coli DH1 12706873 YP_006093163.1 CDS EcDH1_3250 NC_017625.1 3491384 3492493 D TIGRFAM: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sbc:SbBS512_E0271 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3491384..3492493 Escherichia coli DH1 12706874 YP_006093164.1 CDS EcDH1_3251 NC_017625.1 3492587 3493420 D KEGG: ssn:SSON_0334 putative esterase; TIGRFAM: S-formylglutathione hydrolase; PFAM: putative esterase; S-formylglutathione hydrolase 3492587..3493420 Escherichia coli DH1 12706875 YP_006093165.1 CDS EcDH1_3252 NC_017625.1 3493644 3494183 R KEGG: ssn:SSON_0333 nucleoprotein/polynucleotide-associated enzyme; nucleoprotein/polynucleotide-associated enzyme complement(3493644..3494183) Escherichia coli DH1 12706876 YP_006093166.1 CDS EcDH1_3253 NC_017625.1 3494285 3495496 R TIGRFAM: benzoate transport; PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ssn:SSON_0332 putative 3-hydroxyphenylpropionic transporter MhpT; benzoate transport complement(3494285..3495496) Escherichia coli DH1 12706877 YP_006093167.1 CDS EcDH1_3254 NC_017625.1 3496074 3497087 R TIGRFAM: 4-hydroxy-2-oxovalerate aldolase; PFAM: pyruvate carboxyltransferase; DmpG communication domain protein; KEGG: ssn:SSON_0331 4-hydroxy-2-ketovalerate aldolase; 4-hydroxy-2-oxovalerate aldolase complement(3496074..3497087) Escherichia coli DH1 12706878 YP_006093168.1 CDS EcDH1_3255 NC_017625.1 3497084 3498034 R TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: Semialdehyde dehydrogenase NAD - binding; Acetaldehyde dehydrogenase; KEGG: ssn:SSON_0330 acetaldehyde dehydrogenase; acetaldehyde dehydrogenase complement(3497084..3498034) Escherichia coli DH1 12706879 YP_006093169.1 CDS EcDH1_3256 NC_017625.1 3498031 3498840 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: ssn:SSON_0329 2-keto-4-pentenoate hydratase; 4-oxalocrotonate decarboxylase complement(3498031..3498840) Escherichia coli DH1 12706880 YP_006093170.1 CDS EcDH1_3257 NC_017625.1 3498850 3499716 R PFAM: alpha/beta hydrolase fold; KEGG: kpe:KPK_2203 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold protein complement(3498850..3499716) Escherichia coli DH1 12706881 YP_006093171.1 CDS EcDH1_3258 NC_017625.1 3499734 3500678 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ssn:SSON_0295 2,3-dihydroxyphenylpropionate 1,2-dioxygenase; extradiol ring-cleavage dioxygenase class III protein subunit B complement(3499734..3500678) Escherichia coli DH1 12706882 YP_006093172.1 CDS EcDH1_3259 NC_017625.1 3500680 3502344 R PFAM: monooxygenase FAD-binding; KEGG: ssn:SSON_0297 3-(3-hydroxyphenyl)propionate hydroxylase; monooxygenase FAD-binding protein complement(3500680..3502344) Escherichia coli DH1 12706883 YP_006093173.1 CDS EcDH1_3260 NC_017625.1 3502523 3503368 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: kpe:KPK_2200 Mhp operon transcriptional activator; IclR family transcriptional regulator 3502523..3503368 Escherichia coli DH1 12706884 YP_006093174.1 CDS EcDH1_3261 NC_017625.1 3503436 3504527 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_0298 lac repressor; LacI family transcriptional regulator 3503436..3504527 Escherichia coli DH1 12706885 YP_006093175.1 CDS EcDH1_3262 NC_017625.1 3504650 3507724 D PFAM: glycoside hydrolase family 42 domain 5 loop region; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: ssn:SSON_0299 beta-D-galactosidase; glycoside hydrolase family protein 3504650..3507724 Escherichia coli DH1 12706886 YP_006093176.1 CDS EcDH1_3263 NC_017625.1 3507776 3509029 D TIGRFAM: oligosaccharide/H+ symporter, major facilitator superfamily (MFS); PFAM: proton/sugar symporter LacY; major facilitator superfamily MFS_1; KEGG: kpn:KPN_pKPN3p05870 galactoside permease (lactose permease, M protein) (MFS family); oligosaccharide/H+ symporter, major facilitator superfamily (MFS) 3507776..3509029 Escherichia coli DH1 12706887 YP_006093177.1 CDS EcDH1_3264 NC_017625.1 3509101 3509706 D PFAM: transferase hexapeptide repeat containing protein; KEGG: cpf:CPF_0251 galactoside O-acetyltransferase; transferase hexapeptide repeat containing protein 3509101..3509706 Escherichia coli DH1 12706888 YP_006093178.1 CDS EcDH1_3265 NC_017625.1 3509809 3510990 R TIGRFAM: cyanate transporter; PFAM: major facilitator superfamily MFS_1; KEGG: kpe:KPK_1405 cyanate transporter; cyanate transporter complement(3509809..3510990) Escherichia coli DH1 12706889 YP_006093179.1 CDS EcDH1_3266 NC_017625.1 3510996 3511466 R KEGG: bcm:Bcenmc03_4127 cyanate lyase; TIGRFAM: cyanate lyase; PFAM: Cyanate lyase domain protein; cyanate lyase complement(3510996..3511466) Escherichia coli DH1 12706890 YP_006093180.1 CDS EcDH1_3267 NC_017625.1 3511497 3512156 R PFAM: carbonic anhydrase; KEGG: pen:PSEEN3600 carbonic anhydrase; carbonate dehydratase complement(3511497..3512156) Escherichia coli DH1 12706891 YP_006093181.1 CDS EcDH1_3268 NC_017625.1 3512265 3513164 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pen:PSEEN3601 DNA-binding transcriptional regulator CynR; LysR family transcriptional regulator 3512265..3513164 Escherichia coli DH1 12706892 YP_006093182.1 CDS EcDH1_3269 NC_017625.1 3513501 3514784 R PFAM: amidohydrolase; Amidohydrolase 3; KEGG: yen:YE3964 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase complement(3513501..3514784) Escherichia coli DH1 12706893 YP_006093183.1 CDS EcDH1_3270 NC_017625.1 3514774 3516033 R TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pmr:PMI1458 cytosine permease; NCS1 nucleoside transporter family complement(3514774..3516033) Escherichia coli DH1 12706894 YP_006093184.1 CDS EcDH1_3271 NC_017625.1 3516363 3518249 R TIGRFAM: propionate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: cko:CKO_02827 propionyl-CoA synthetase; propionate/CoA ligase complement(3516363..3518249) Escherichia coli DH1 12706895 YP_006093185.1 CDS EcDH1_3272 NC_017625.1 3518289 3519740 R KEGG: cko:CKO_02828 2-methylcitrate dehydratase; TIGRFAM: 2-methylcitrate dehydratase; PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase complement(3518289..3519740) Escherichia coli DH1 12706896 YP_006093186.1 CDS EcDH1_3273 NC_017625.1 3519774 3520943 R KEGG: cko:CKO_02829 methylcitrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase/citrate synthase II complement(3519774..3520943) Escherichia coli DH1 12706897 YP_006093187.1 CDS EcDH1_3274 NC_017625.1 3520991 3521437 D KEGG: hypothetical protein; hypothetical protein 3520991..3521437 Escherichia coli DH1 12706898 YP_006093188.1 CDS EcDH1_3275 NC_017625.1 3521383 3522273 R TIGRFAM: methylisocitrate lyase; KEGG: cko:CKO_02830 2-methylisocitrate lyase; methylisocitrate lyase complement(3521383..3522273) Escherichia coli DH1 12706899 YP_006093189.1 CDS EcDH1_3276 NC_017625.1 3522512 3524098 D KEGG: cko:CKO_02831 hypothetical protein; TIGRFAM: propionate catabolism operon regulatory protein PrpR; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; Propionate catabolism activator domain protein; SMART: AAA ATPase; Fis family proprionate catabolism activator 3522512..3524098 Escherichia coli DH1 12706900 YP_006093190.1 CDS EcDH1_3277 NC_017625.1 3524196 3524471 R PFAM: protein of unknown function DUF1471; KEGG: cko:CKO_02832 hypothetical protein; hypothetical protein complement(3524196..3524471) Escherichia coli DH1 12706901 YP_006093191.1 CDS EcDH1_3278 NC_017625.1 3524618 3525289 D TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ssn:SSON_0302 putative cytochrome subunit of dehydrogenase; homoserine/threonine efflux pump 3524618..3525289 Escherichia coli DH1 12706902 YP_006093192.1 CDS EcDH1_3279 NC_017625.1 3525306 3525551 R KEGG: ssn:SSON_0303 hypothetical protein; hypothetical protein complement(3525306..3525551) Escherichia coli DH1 12706903 YP_006093193.1 CDS EcDH1_3280 NC_017625.1 3525964 3526779 R KEGG: ssn:SSON_0306 hypothetical protein; hypothetical protein complement(3525964..3526779) Escherichia coli DH1 12706905 YP_006093194.1 CDS EcDH1_3281 NC_017625.1 3527022 3528071 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_0308 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein complement(3527022..3528071) Escherichia coli DH1 12706906 YP_006093195.1 CDS EcDH1_3282 NC_017625.1 3528448 3529830 R PFAM: Amidohydrolase 3; KEGG: ssn:SSON_0309 deaminase; amidohydrolase complement(3528448..3529830) Escherichia coli DH1 12706907 YP_006093196.1 CDS EcDH1_3283 NC_017625.1 3529840 3530790 R PFAM: aspartate/glutamate/uridylate kinase; KEGG: ssn:SSON_0310 putative carbamate kinase; Carbamate kinase complement(3529840..3530790) Escherichia coli DH1 12706908 YP_006093197.1 CDS EcDH1_3284 NC_017625.1 3530866 3531162 R hypothetical protein complement(3530866..3531162) Escherichia coli DH1 12706909 YP_006093198.1 CDS EcDH1_3285 NC_017625.1 3531212 3532630 R PFAM: protein of unknown function DUF1116; KEGG: ssn:SSON_0311 hypothetical protein; hypothetical protein complement(3531212..3532630) Escherichia coli DH1 12706910 YP_006093199.1 CDS EcDH1_3286 NC_017625.1 3532630 3534177 R PFAM: FdrA family protein; KEGG: ssn:SSON_0312 putative oxidoreductase subunit; FdrA family protein complement(3532630..3534177) Escherichia coli DH1 12706911 YP_006093200.1 CDS EcDH1_3287 NC_017625.1 3534167 3535030 R KEGG: ssn:SSON_0313 hypothetical protein; hypothetical protein complement(3534167..3535030) Escherichia coli DH1 12706912 YP_006093201.1 CDS EcDH1_3288 NC_017625.1 3535070 3535675 R PFAM: Ankyrin; KEGG: ent:Ent638_3145 ankyrin; ankyrin complement(3535070..3535675) Escherichia coli DH1 12706913 YP_006093202.1 CDS EcDH1_3289 NC_017625.1 3535933 3536430 D PFAM: protein of unknown function DUF1097; KEGG: ctc:CTC01779 glutathione-regulated potassium-efflux system protein; hypothetical protein 3535933..3536430 Escherichia coli DH1 12706914 YP_006093203.1 CDS EcDH1_3290 NC_017625.1 3536522 3537454 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ent:Ent638_3146 LysR family transcriptional regulator; LysR family transcriptional regulator 3536522..3537454 Escherichia coli DH1 12706915 YP_006093204.1 CDS EcDH1_3291 NC_017625.1 3537496 3538584 R PFAM: regulatory protein LuxR; EAL domain protein; KEGG: aha:AHA_3485 EAL domain-containing protein; diguanylate phosphodiesterase complement(3537496..3538584) Escherichia coli DH1 12706916 YP_006093205.1 CDS EcDH1_3292 NC_017625.1 3539459 3541492 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: sfv:SFV_0325 choline transport protein BetT; choline/carnitine/betaine transporter complement(3539459..3541492) Escherichia coli DH1 12706917 YP_006093206.1 CDS EcDH1_3293 NC_017625.1 3541621 3542208 D TIGRFAM: transcriptional repressor BetI; PFAM: regulatory protein TetR; KEGG: sfv:SFV_0324 transcriptional regulator BetI; TetR family transcriptional regulator 3541621..3542208 Escherichia coli DH1 12706918 YP_006093207.1 CDS EcDH1_3294 NC_017625.1 3542222 3543694 D TIGRFAM: betaine aldehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sfv:SFV_0323 betaine aldehyde dehydrogenase; betaine aldehyde dehydrogenase 3542222..3543694 Escherichia coli DH1 12706919 YP_006093208.1 CDS EcDH1_3295 NC_017625.1 3543708 3545378 D TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: sfv:SFV_0322 choline dehydrogenase; choline dehydrogenase 3543708..3545378 Escherichia coli DH1 12706920 YP_006093209.1 CDS EcDH1_3296 NC_017625.1 3545591 3546259 D KEGG: sfv:SFV_0321 hypothetical protein; hypothetical protein 3545591..3546259 Escherichia coli DH1 12706921 YP_006093210.1 CDS EcDH1_3297 NC_017625.1 3546502 3547197 R PFAM: protein of unknown function DUF162; KEGG: sbc:SbBS512_E0257 hypothetical protein; hypothetical protein complement(3546502..3547197) Escherichia coli DH1 12706922 YP_006093211.1 CDS EcDH1_3298 NC_017625.1 3547190 3548617 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: sfv:SFV_0318 hypothetical protein; iron-sulfur cluster binding protein complement(3547190..3548617) Escherichia coli DH1 12706923 YP_006093212.1 CDS EcDH1_3299 NC_017625.1 3548628 3549347 R PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: sbc:SbBS512_E0259 cysteine-rich domain protein; hypothetical protein complement(3548628..3549347) Escherichia coli DH1 12706924 YP_006093213.1 CDS EcDH1_3300 NC_017625.1 3549874 3550728 R PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ssn:SSON_0319 putative AraC-type regulatory protein; AraC family transcriptional regulator complement(3549874..3550728) Escherichia coli DH1 12706925 YP_006093214.1 CDS EcDH1_3301 NC_017625.1 3550954 3552279 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ssn:SSON_0320 pyridine nucleotide-disulfide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerization region 3550954..3552279 Escherichia coli DH1 12706926 YP_006093215.1 CDS EcDH1_3302 NC_017625.1 3552636 3553229 D PFAM: protein of unknown function DUF417; KEGG: ssn:SSON_0322 hypothetical protein; hypothetical protein 3552636..3553229 Escherichia coli DH1 12706927 YP_006093216.1 CDS EcDH1_3303 NC_017625.1 3553819 3554505 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E0268 putative HTH-type transcriptional regulator YkgA; AraC family transcriptional regulator 3553819..3554505 Escherichia coli DH1 12706928 YP_006093217.1 CDS EcDH1_3304 NC_017625.1 3554502 3555368 R PFAM: Integrase catalytic region; KEGG: seh:SeHA_C4704 ISEc16, orfB; integrase catalytic subunit complement(3554502..3555368) Escherichia coli DH1 12706929 YP_006093218.1 CDS EcDH1_3305 NC_017625.1 3555365 3555664 R PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_2924 IS3 ORF1; transposase IS3/IS911 family protein complement(3555365..3555664) Escherichia coli DH1 12706930 YP_006093219.1 CDS EcDH1_3306 NC_017625.1 3555711 3556598 R KEGG: sgl:SG0602 putative invasin; hypothetical protein complement(3555711..3556598) Escherichia coli DH1 12706931 YP_006093220.1 CDS EcDH1_3307 NC_017625.1 3557713 3557814 D hypothetical protein 3557713..3557814 Escherichia coli DH1 12706932 YP_006093221.1 CDS EcDH1_3308 NC_017625.1 3558175 3558441 D PFAM: ribosomal protein L31; KEGG: sbo:SBO_0223 50S ribosomal protein L31 type B; 50S ribosomal protein L31 3558175..3558441 Escherichia coli DH1 12706933 YP_006093222.1 CDS EcDH1_3309 NC_017625.1 3558441 3558581 D PFAM: ribosomal protein L36; KEGG: cko:CKO_02695 hypothetical protein; 50S ribosomal protein L36 3558441..3558581 Escherichia coli DH1 12706934 YP_006093223.1 CDS EcDH1_3310 NC_017625.1 3559667 3560209 D PFAM: regulatory protein LuxR; KEGG: sbo:SBO_0225 putative regulator; LuxR family transcriptional regulator 3559667..3560209 Escherichia coli DH1 12706935 YP_006093224.1 CDS EcDH1_3311 NC_017625.1 3560284 3560871 D KEGG: sbo:SBO_0226 hypothetical protein; hypothetical protein 3560284..3560871 Escherichia coli DH1 12706936 YP_006093225.1 CDS EcDH1_3312 NC_017625.1 3560929 3561597 D KEGG: sbo:SBO_0227 hypothetical protein; hypothetical protein 3560929..3561597 Escherichia coli DH1 12706937 YP_006093226.1 CDS EcDH1_3313 NC_017625.1 3561623 3564148 D KEGG: kpe:KPK_4397 hypothetical protein; hypothetical protein 3561623..3564148 Escherichia coli DH1 12706938 YP_006093227.1 CDS EcDH1_3314 NC_017625.1 3564138 3565781 D KEGG: kpn:KPN_00294 putative receptor; putative receptor 3564138..3565781 Escherichia coli DH1 12706939 YP_006093228.1 CDS EcDH1_3315 NC_017625.1 3565804 3566460 D KEGG: kpe:KPK_4395 hypothetical protein; hypothetical protein 3565804..3566460 Escherichia coli DH1 12706940 YP_006093229.1 CDS EcDH1_3316 NC_017625.1 3566773 3567102 D PFAM: protein of unknown function UPF0153; KEGG: esa:ESA_01555 hypothetical protein; hypothetical protein 3566773..3567102 Escherichia coli DH1 12706941 YP_006093230.1 CDS EcDH1_3317 NC_017625.1 3567350 3567964 R PFAM: protein of unknown function DUF1440; KEGG: ent:Ent638_2282 hypothetical protein; hypothetical protein complement(3567350..3567964) Escherichia coli DH1 12706942 YP_006093231.1 CDS EcDH1_3318 NC_017625.1 3568382 3569071 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: esa:ESA_04143 hypothetical protein; (2Fe-2S)-binding domain-containing protein 3568382..3569071 Escherichia coli DH1 12706943 YP_006093232.1 CDS EcDH1_3319 NC_017625.1 3569068 3570024 D PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: esa:ESA_04145 hypothetical protein; molybdopterin dehydrogenase FAD-binding protein 3569068..3570024 Escherichia coli DH1 12706944 YP_006093233.1 CDS EcDH1_3320 NC_017625.1 3570021 3572219 D PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: esa:ESA_04146 hypothetical protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 3570021..3572219 Escherichia coli DH1 12706945 YP_006093234.1 CDS EcDH1_3321 NC_017625.1 3572229 3573185 D PFAM: protein of unknown function DUF182; KEGG: esa:ESA_04147 hypothetical protein; hypothetical protein 3572229..3573185 Escherichia coli DH1 12706946 YP_006093235.1 CDS EcDH1_3322 NC_017625.1 3573164 3573574 D KEGG: smd:Smed_5891 transcriptional regulator, LysR family; hypothetical protein 3573164..3573574 Escherichia coli DH1 12706947 YP_006093236.1 CDS EcDH1_3323 NC_017625.1 3573934 3575259 D PFAM: integrase family protein; KEGG: bch:Bcen2424_1326 phage integrase family protein; integrase family protein 3573934..3575259 Escherichia coli DH1 12706949 YP_006093237.1 CDS EcDH1_3324 NC_017625.1 3575376 3575816 D hypothetical protein 3575376..3575816 Escherichia coli DH1 12706950 YP_006093238.1 CDS EcDH1_3325 NC_017625.1 3575942 3576922 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 3575942..3576922 Escherichia coli DH1 12706951 YP_006093239.1 CDS EcDH1_3326 NC_017625.1 3577382 3578209 D KEGG: sfl:SF2986 hypothetical protein; hypothetical protein 3577382..3578209 Escherichia coli DH1 12706952 YP_006093240.1 CDS EcDH1_3327 NC_017625.1 3578314 3578934 D KEGG: ppr:PBPRA0888 putative resolvase; hypothetical protein 3578314..3578934 Escherichia coli DH1 12706953 YP_006093241.1 CDS EcDH1_3328 NC_017625.1 3579206 3579832 D KEGG: son:SO_1443 hypothetical protein; hypothetical protein 3579206..3579832 Escherichia coli DH1 12706954 YP_006093242.1 CDS EcDH1_3329 NC_017625.1 3579923 3580654 R KEGG: slo:Shew_1261 type III restriction enzyme, res subunit; type III restriction enzyme, res subunit complement(3579923..3580654) Escherichia coli DH1 12706955 YP_006093243.1 CDS EcDH1_3332 NC_017625.1 3581849 3582853 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ent:Ent638_0459 ornithine carbamoyltransferase subunit F; ornithine carbamoyltransferase 3581849..3582853 Escherichia coli DH1 12706958 YP_006093244.1 CDS EcDH1_3333 NC_017625.1 3582992 3583750 D PFAM: regulatory protein IclR; Helix-turn-helix Mga DNA-binding trans-acting positive regulator; Transcriptional regulator IclR; KEGG: ent:Ent638_0458 regulatory protein, IclR; IclR family transcriptional regulator 3582992..3583750 Escherichia coli DH1 12706959 YP_006093245.1 CDS EcDH1_3334 NC_017625.1 3583755 3585365 R PFAM: glycoside hydrolase family 43; KEGG: ent:Ent638_0457 alpha-N-arabinofuranosidase; alpha-N-arabinofuranosidase complement(3583755..3585365) Escherichia coli DH1 12706960 YP_006093246.1 CDS EcDH1_3335 NC_017625.1 3585377 3586759 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ent:Ent638_0456 putative symporter YagG; sugar (Glycoside-Pentoside-Hexuronide) transporter complement(3585377..3586759) Escherichia coli DH1 12706961 YP_006093247.1 CDS EcDH1_3336 NC_017625.1 3586986 3588953 R KEGG: ent:Ent638_0455 hypothetical protein; TIGRFAM: dehydratase, YjhG/YagF family; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dehydratase, YjhG/YagF family complement(3586986..3588953) Escherichia coli DH1 12706962 YP_006093248.1 CDS EcDH1_3337 NC_017625.1 3588968 3589876 R PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(3588968..3589876) Escherichia coli DH1 12706963 YP_006093249.1 CDS EcDH1_3338 NC_017625.1 3590183 3591325 D PFAM: Integrase catalytic region; KEGG: bra:BRADO5530 putative transposase; integrase catalytic subunit 3590183..3591325 Escherichia coli DH1 12706964 YP_006093250.1 CDS EcDH1_3339 NC_017625.1 3591419 3591769 D PFAM: YagBYeeUYfjZ family protein; KEGG: spe:Spro_1771 hypothetical protein; YagBYeeUYfjZ family protein 3591419..3591769 Escherichia coli DH1 12706965 YP_006093251.1 CDS EcDH1_3340 NC_017625.1 3591792 3592130 D PFAM: transposase IS3/IS911 family protein; KEGG: sfv:SFV_4359 ISEhe3 orfA; transposase IS3/IS911 family protein 3591792..3592130 Escherichia coli DH1 12706966 YP_006093252.1 CDS EcDH1_3343 NC_017625.1 3593352 3594398 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cko:CKO_02821 ferric transporter ATP-binding subunit; ABC transporter 3593352..3594398 Escherichia coli DH1 12706969 YP_006093253.1 CDS EcDH1_3344 NC_017625.1 3594507 3595439 R PFAM: homocysteine S-methyltransferase; KEGG: cko:CKO_02822 homocysteine methyltransferase; homocysteine S-methyltransferase complement(3594507..3595439) Escherichia coli DH1 12706970 YP_006093254.1 CDS EcDH1_3345 NC_017625.1 3595426 3596853 R PFAM: amino acid permease-associated region; KEGG: ent:Ent638_0827 S-methylmethionine transporter; amino acid permease complement(3595426..3596853) Escherichia coli DH1 12706971 YP_006093255.1 CDS EcDH1_3346 NC_017625.1 3597073 3598053 D PFAM: transposase IS4 family protein; KEGG: sao:SAOUHSC_00778 hypothetical protein; transposase IS4 family protein 3597073..3598053 Escherichia coli DH1 12706972 YP_006093256.1 CDS EcDH1_3347 NC_017625.1 3598162 3599307 R PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: sfl:SF2976 reverse transcriptase-like protein; RNA-directed DNA polymerase complement(3598162..3599307) Escherichia coli DH1 12706973 YP_006093257.1 CDS EcDH1_3348 NC_017625.1 3599331 3599453 R KEGG: ypg:YpAngola_0117 hypothetical protein; hypothetical protein complement(3599331..3599453) Escherichia coli DH1 12706974 YP_006093258.1 CDS EcDH1_3349 NC_017625.1 3599899 3600324 R KEGG: sfx:S0235 IS911 orfA; IS911 orfA complement(3599899..3600324) Escherichia coli DH1 12706975 YP_006093259.1 CDS EcDH1_3350 NC_017625.1 3600400 3601551 R PFAM: Integrase catalytic region; KEGG: bac:BamMC406_6641 integrase catalytic region; integrase catalytic subunit complement(3600400..3601551) Escherichia coli DH1 12706976 YP_006093260.1 CDS EcDH1_3351 NC_017625.1 3601508 3601876 R PFAM: transposase IS3/IS911 family protein; KEGG: eta:ETA_pET460330 IS911 transposase; transposase IS3/IS911 family protein complement(3601508..3601876) Escherichia coli DH1 12706977 YP_006093261.1 CDS EcDH1_3352 NC_017625.1 3601972 3602865 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ppw:PputW619_2615 LysR family transcriptional regulator; LysR family transcriptional regulator 3601972..3602865 Escherichia coli DH1 12706978 YP_006093262.1 CDS EcDH1_3353 NC_017625.1 3603194 3604057 D PFAM: GTP-binding protein HSR1-related; KEGG: kpe:KPK_4950 GTPase family protein; GTP-binding protein HSR1-like protein 3603194..3604057 Escherichia coli DH1 12706979 YP_006093263.1 CDS EcDH1_3354 NC_017625.1 3604149 3604970 D PFAM: protein of unknown function DUF932; KEGG: ypy:YPK_3134 hypothetical protein; hypothetical protein 3604149..3604970 Escherichia coli DH1 12706980 YP_006093264.1 CDS EcDH1_3355 NC_017625.1 3605187 3606044 D KEGG: seg:SG0280 hypothetical protein; transcriptional regulator protein-like protein 3605187..3606044 Escherichia coli DH1 12706981 YP_006093265.1 CDS EcDH1_3356 NC_017625.1 3606067 3606534 D KEGG: kpe:KPK_4947 hypothetical protein; hypothetical protein 3606067..3606534 Escherichia coli DH1 12706982 YP_006093266.1 CDS EcDH1_3357 NC_017625.1 3606611 3606850 D PFAM: protein of unknown function DUF905; KEGG: kpn:KPN_pKPN3p05984 hypothetical protein; hypothetical protein 3606611..3606850 Escherichia coli DH1 12706983 YP_006093267.1 CDS EcDH1_3358 NC_017625.1 3606948 3607406 D PFAM: Antirestriction protein; KEGG: seh:SeHA_C4681 antirestriction protein; antirestriction protein 3606948..3607406 Escherichia coli DH1 12706984 YP_006093268.1 CDS EcDH1_3359 NC_017625.1 3607422 3607898 D PFAM: DNA repair protein RadC; KEGG: sdy:SDY_4590 putative DNA repair protein; DNA repair protein RadC 3607422..3607898 Escherichia coli DH1 12706985 YP_006093269.1 CDS EcDH1_3360 NC_017625.1 3607907 3608128 D PFAM: protein of unknown function DUF987; KEGG: seg:SG0269 hypothetical protein; hypothetical protein 3607907..3608128 Escherichia coli DH1 12706986 YP_006093270.1 CDS EcDH1_3361 NC_017625.1 3608147 3608464 D PFAM: YagBYeeUYfjZ family protein; KEGG: plu:plu0134 hypothetical protein; YagBYeeUYfjZ family protein 3608147..3608464 Escherichia coli DH1 12706987 YP_006093271.1 CDS EcDH1_3362 NC_017625.1 3608485 3608826 D PFAM: protein of unknown function DUF1219; KEGG: eca:ECA2853 hypothetical protein; hypothetical protein 3608485..3608826 Escherichia coli DH1 12706988 YP_006093272.1 CDS EcDH1_3363 NC_017625.1 3608942 3609046 D hypothetical protein 3608942..3609046 Escherichia coli DH1 12706989 YP_006093273.1 CDS EcDH1_3364 NC_017625.1 3609398 3610651 R KEGG: ssn:SSON_0285 gamma-glutamyl phosphate reductase; TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; gamma-glutamyl phosphate reductase complement(3609398..3610651) Escherichia coli DH1 12706991 YP_006093274.1 CDS EcDH1_3365 NC_017625.1 3610663 3611766 R KEGG: sdy:SDY_0474 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; glutamate 5-kinase complement(3610663..3611766) Escherichia coli DH1 12706992 YP_006093275.1 CDS EcDH1_3366 NC_017625.1 3612054 3613109 D PFAM: porin Gram-negative type; KEGG: ssn:SSON_0283 outer membrane phosphoporin protein E; porin 3612054..3613109 Escherichia coli DH1 12706993 YP_006093276.1 CDS EcDH1_3367 NC_017625.1 3613148 3613549 R PFAM: transcriptional regulator Crl; KEGG: sbc:SbBS512_E0237 sigma factor-binding protein Crl; transcriptional regulator Crl complement(3613148..3613549) Escherichia coli DH1 12706994 YP_006093277.1 CDS EcDH1_3368 NC_017625.1 3613607 3614851 R PFAM: protein of unknown function DUF1100 hydrolase family protein; KEGG: sbo:SBO_0245 fermentation/respiration switch protein; hypothetical protein complement(3613607..3614851) Escherichia coli DH1 12706995 YP_006093278.1 CDS EcDH1_3369 NC_017625.1 3614943 3615401 R PFAM: phosphoribosyltransferase; KEGG: sdy:SDY_0479 xanthine-guanine phosphoribosyltransferase; xanthine phosphoribosyltransferase complement(3614943..3615401) Escherichia coli DH1 12706996 YP_006093279.1 CDS EcDH1_3370 NC_017625.1 3615662 3617119 D KEGG: sbc:SbBS512_E0234 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 3615662..3617119 Escherichia coli DH1 12706997 YP_006093280.1 CDS EcDH1_3371 NC_017625.1 3617176 3617712 R TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; KEGG: sbc:SbBS512_E0233 peptidyl-tRNA hydrolase domain protein; peptide chain release factor H complement(3617176..3617712) Escherichia coli DH1 12706998 YP_006093281.1 CDS EcDH1_3373 NC_017625.1 3618217 3618591 R PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_0275 hypothetical protein; N-acetyltransferase GCN5 complement(3618217..3618591) Escherichia coli DH1 12707000 YP_006093282.1 CDS EcDH1_3374 NC_017625.1 3618679 3619077 R KEGG: sfv:SFV_0297 putative toxin YafO; putative toxin YafO complement(3618679..3619077) Escherichia coli DH1 12707001 YP_006093283.1 CDS EcDH1_3375 NC_017625.1 3619080 3619373 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: sfv:SFV_0298 putative antitoxin of the YafO-YafN toxin-antitoxin system; prevent-host-death family protein complement(3619080..3619373) Escherichia coli DH1 12707002 YP_006093284.1 CDS EcDH1_3376 NC_017625.1 3619425 3620480 R PFAM: UMUC domain protein DNA-repair protein; KEGG: ssn:SSON_0274 DNA polymerase IV; DNA-directed DNA polymerase complement(3619425..3620480) Escherichia coli DH1 12707003 YP_006093285.1 CDS EcDH1_3377 NC_017625.1 3620551 3621336 R PFAM: OmpA/MotB domain protein; KEGG: ssn:SSON_0272 hypothetical protein; OmpA/MotB domain-containing protein complement(3620551..3621336) Escherichia coli DH1 12707004 YP_006093286.1 CDS EcDH1_3378 NC_017625.1 3621281 3623020 D PFAM: type III secretion FHIPEP protein; KEGG: ssn:SSON_0273 flagellar biosynthesis; type III secretion FHIPEP protein 3621281..3623020 Escherichia coli DH1 12707005 YP_006093287.1 CDS EcDH1_3379 NC_017625.1 3623244 3623741 R KEGG: ssn:SSON_0271 hypothetical protein; hypothetical protein complement(3623244..3623741) Escherichia coli DH1 12707006 YP_006093288.1 CDS EcDH1_3380 NC_017625.1 3623917 3624621 R PFAM: NLP/P60 protein; KEGG: ssn:SSON_0269 putative lipoprotein; NLP/P60 protein complement(3623917..3624621) Escherichia coli DH1 12707007 YP_006093289.1 CDS EcDH1_3381 NC_017625.1 3624876 3625136 D TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: ssn:SSON_0268 damage-inducible protein J; RelB/DinJ family addiction module antitoxin 3624876..3625136 Escherichia coli DH1 12707008 YP_006093290.1 CDS EcDH1_3382 NC_017625.1 3625139 3625417 D TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: sdy:SDY_0251 hypothetical protein; RelE/StbE family addiction module toxin 3625139..3625417 Escherichia coli DH1 12707009 YP_006093291.1 CDS EcDH1_3383 NC_017625.1 3625573 3626313 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sdy:SDY_0250 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 3625573..3626313 Escherichia coli DH1 12707010 YP_006093292.1 CDS EcDH1_3384 NC_017625.1 3626284 3627051 R PFAM: glutamine amidotransferase class-II; KEGG: sbc:SbBS512_E0220 glutamine amidotransferase, class II; glutamine amidotransferase complement(3626284..3627051) Escherichia coli DH1 12707011 YP_006093293.1 CDS EcDH1_3385 NC_017625.1 3627257 3627835 R TIGRFAM: phosphoheptose isomerase; KEGG: sbc:SbBS512_E0218 phosphoheptose isomerase; phosphoheptose isomerase complement(3627257..3627835) Escherichia coli DH1 12707012 YP_006093294.1 CDS EcDH1_3386 NC_017625.1 3628075 3630519 D PFAM: acyl-CoA dehydrogenase domain protein; Protein of unknown function DUF1974; KEGG: sbc:SbBS512_E0217 acyl-coenzyme A dehydrogenase; hypothetical protein 3628075..3630519 Escherichia coli DH1 12707013 YP_006093295.1 CDS EcDH1_3387 NC_017625.1 3630562 3631008 R PFAM: Inhibitor of vertebrate lysozyme; KEGG: sdy:SDY_0246 vertebrate C-lysozyme inhibitor; lysozyme inhibitor complement(3630562..3631008) Escherichia coli DH1 12707014 YP_006093296.1 CDS EcDH1_3388 NC_017625.1 3631189 3631959 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sbc:SbBS512_E0215 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3631189..3631959 Escherichia coli DH1 12707015 YP_006093297.1 CDS EcDH1_3391 NC_017625.1 3632642 3633121 D KEGG: sea:SeAg_B1092 hypothetical protein; hypothetical protein 3632642..3633121 Escherichia coli DH1 12707018 YP_006093298.1 CDS EcDH1_3392 NC_017625.1 3633258 3634043 R KEGG: ssn:SSON_0231 putative aminopeptidase; putative aminopeptidase complement(3633258..3634043) Escherichia coli DH1 12707019 YP_006093299.1 CDS EcDH1_3393 NC_017625.1 3634580 3635320 R KEGG: sfv:SFV_0198 DNA polymerase III subunit epsilon; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(3634580..3635320) Escherichia coli DH1 12707021 YP_006093300.1 CDS EcDH1_3394 NC_017625.1 3635376 3635843 D PFAM: ribonuclease H; KEGG: sdy:SDY_0233 ribonuclease H; Ribonuclease H 3635376..3635843 Escherichia coli DH1 12707022 YP_006093301.1 CDS EcDH1_3395 NC_017625.1 3635840 3636562 R PFAM: Methyltransferase type 11; KEGG: sbo:SBO_0202 hypothetical protein; type 11 methyltransferase complement(3635840..3636562) Escherichia coli DH1 12707023 YP_006093302.1 CDS EcDH1_3396 NC_017625.1 3636596 3637351 D KEGG: sbc:SbBS512_E0208 hydroxyacylglutathione hydrolase; TIGRFAM: hydroxyacylglutathione hydrolase; PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 3636596..3637351 Escherichia coli DH1 12707024 YP_006093303.1 CDS EcDH1_3398 NC_017625.1 3638829 3639452 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sbc:SbBS512_E0206 methyltransferase, UbiE/COQ5 family; type 11 methyltransferase complement(3638829..3639452) Escherichia coli DH1 12707026 YP_006093304.1 CDS EcDH1_3399 NC_017625.1 3639456 3640235 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: sbc:SbBS512_E0205 endonuclease/exonuclease/phosphatase family protein; endonuclease/exonuclease/phosphatase complement(3639456..3640235) Escherichia coli DH1 12707027 YP_006093305.1 CDS EcDH1_3400 NC_017625.1 3640497 3641411 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_0222 putative transcriptional regulator LysR-type; LysR family transcriptional regulator 3640497..3641411 Escherichia coli DH1 12707028 YP_006093306.1 CDS EcDH1_3401 NC_017625.1 3641408 3642211 R PFAM: aldo/keto reductase; KEGG: ssn:SSON_0221 2,5-diketo-D-gluconate reductase B; aldo/keto reductase complement(3641408..3642211) Escherichia coli DH1 12707029 YP_006093307.1 CDS EcDH1_3402 NC_017625.1 3647970 3648545 R TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase central region; KEGG: ssn:SSON_0214 D,D-heptose 1,7-bisphosphate phosphatase; D,D-heptose 1,7-bisphosphate phosphatase complement(3647970..3648545) Escherichia coli DH1 12707036 YP_006093308.1 CDS EcDH1_3403 NC_017625.1 3648733 3649764 D KEGG: sbc:SbBS512_E0193 D-methionine ABC transporter, ATP-binding protein; TIGRFAM: D-methionine ABC transporter, ATPase subunit; PFAM: ABC transporter related; ABC transporter, conserved site; SMART: AAA ATPase; D-methionine ABC transporter ATPase 3648733..3649764 Escherichia coli DH1 12707037 YP_006093309.1 CDS EcDH1_3404 NC_017625.1 3649757 3650410 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbo:SBO_0187 DL-methionine transporter permease subunit; binding-protein-dependent transport system inner membrane protein 3649757..3650410 Escherichia coli DH1 12707038 YP_006093310.1 CDS EcDH1_3405 NC_017625.1 3650450 3651265 D TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: sbc:SbBS512_E0191 D-methionine ABC transporter, periplasmic D-methionine-binding lipoprotein; lipoprotein 3650450..3651265 Escherichia coli DH1 12707039 YP_006093311.1 CDS EcDH1_3406 NC_017625.1 3651383 3651787 D KEGG: sdy:SDY_0215 outer membrane lipoprotein; outer membrane lipoprotein 3651383..3651787 Escherichia coli DH1 12707040 YP_006093312.1 CDS EcDH1_3407 NC_017625.1 3651784 3652491 D PFAM: protein of unknown function UPF0066; KEGG: ssn:SSON_0209 hypothetical protein; hypothetical protein 3651784..3652491 Escherichia coli DH1 12707041 YP_006093313.1 CDS EcDH1_3408 NC_017625.1 3652603 3654321 D TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: sbc:SbBS512_E0188 prolyl-tRNA synthetase; prolyl-tRNA synthetase 3652603..3654321 Escherichia coli DH1 12707042 YP_006093314.1 CDS EcDH1_3409 NC_017625.1 3654375 3655199 D KEGG: sbc:SbBS512_E0187 putative lipoprotein; putative lipoprotein 3654375..3655199 Escherichia coli DH1 12707043 YP_006093315.1 CDS EcDH1_3410 NC_017625.1 3655399 3656109 R PFAM: copper resistance lipoprotein NlpE; KEGG: ssn:SSON_0206 lipoprotein involved with copper homeostasis and adhesion; copper resistance lipoprotein NlpE complement(3655399..3656109) Escherichia coli DH1 12707044 YP_006093316.1 CDS EcDH1_3411 NC_017625.1 3656123 3656545 R PFAM: Class I peptide chain release factor; KEGG: sbc:SbBS512_E0185 peptidyl-tRNA hydrolase domain protein; class I peptide chain release factor complement(3656123..3656545) Escherichia coli DH1 12707045 YP_006093317.1 CDS EcDH1_3412 NC_017625.1 3656542 3657087 R PFAM: YaeQ family protein; KEGG: sbc:SbBS512_E0184 hypothetical protein; YaeQ family protein complement(3656542..3657087) Escherichia coli DH1 12707046 YP_006093318.1 CDS EcDH1_3413 NC_017625.1 3657253 3657453 D PFAM: protein of unknown function UPF0253; KEGG: sdy:SDY_0208 hypothetical protein; hypothetical protein 3657253..3657453 Escherichia coli DH1 12707047 YP_006093319.1 CDS EcDH1_3414 NC_017625.1 3657440 3657700 D PFAM: Modulator of Rho-dependent transcription termination; KEGG: sdy:SDY_0207 Rho-binding antiterminator; transcriptional antiterminator Rof 3657440..3657700 Escherichia coli DH1 12707048 YP_006093320.1 CDS EcDH1_3415 NC_017625.1 3657749 3659047 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: sbc:SbBS512_E0181 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase complement(3657749..3659047) Escherichia coli DH1 12707049 YP_006093321.1 CDS EcDH1_3416 NC_017625.1 3659112 3659501 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sbc:SbBS512_E0180 glyoxylase family protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(3659112..3659501) Escherichia coli DH1 12707050 YP_006093322.1 CDS EcDH1_3417 NC_017625.1 3659558 3661699 R PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ssn:SSON_0199 lysine decarboxylase 2, constitutive; lysine decarboxylase complement(3659558..3661699) Escherichia coli DH1 12707051 YP_006093323.1 CDS EcDH1_3418 NC_017625.1 3661798 3662757 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; KEGG: sdy:SDY_0201 acetyl-CoA carboxylase carboxyltransferase subunit alpha; acetyl-CoA carboxylase, carboxyl transferase subunit alpha complement(3661798..3662757) Escherichia coli DH1 12707052 YP_006093324.1 CDS EcDH1_3419 NC_017625.1 3662770 3666252 R KEGG: ssn:SSON_0196 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(3662770..3666252) Escherichia coli DH1 12707053 YP_006093325.1 CDS EcDH1_3420 NC_017625.1 3666289 3666885 R PFAM: ribonuclease HII/HIII; KEGG: ssn:SSON_0195 ribonuclease HII; Ribonuclease H complement(3666289..3666885) Escherichia coli DH1 12707054 YP_006093326.1 CDS EcDH1_3421 NC_017625.1 3666882 3668030 R KEGG: ssn:SSON_0194 lipid-A-disaccharide synthase; TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; lipid-A-disaccharide synthase complement(3666882..3668030) Escherichia coli DH1 12707055 YP_006093327.1 CDS EcDH1_3422 NC_017625.1 3668030 3668818 R TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: sdy:SDY_0197 UDP-N-acetylglucosamine acyltransferase; acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase complement(3668030..3668818) Escherichia coli DH1 12707056 YP_006093328.1 CDS EcDH1_3424 NC_017625.1 3669381 3670406 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD; KEGG: sdy:SDY_0195 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase complement(3669381..3670406) Escherichia coli DH1 12707058 YP_006093329.1 CDS EcDH1_3425 NC_017625.1 3670410 3670895 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: sdy:SDY_0194 periplasmic chaperone; outer membrane chaperone Skp complement(3670410..3670895) Escherichia coli DH1 12707059 YP_006093330.1 CDS EcDH1_3426 NC_017625.1 3671017 3673449 R TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sbc:SbBS512_E0170 outer membrane protein assembly complex, YaeT protein; outer membrane protein assembly complex, YaeT protein complement(3671017..3673449) Escherichia coli DH1 12707060 YP_006093331.1 CDS EcDH1_3427 NC_017625.1 3673479 3674831 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: sfv:SFV_0159 zinc metallopeptidase; membrane-associated zinc metalloprotease complement(3673479..3674831) Escherichia coli DH1 12707061 YP_006093332.1 CDS EcDH1_3428 NC_017625.1 3674843 3675700 R PFAM: phosphatidate cytidylyltransferase; KEGG: sbc:SbBS512_E0168 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(3674843..3675700) Escherichia coli DH1 12707062 YP_006093333.1 CDS EcDH1_3429 NC_017625.1 3675713 3676471 R KEGG: sdy:SDY_0190 undecaprenyl pyrophosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(3675713..3676471) Escherichia coli DH1 12707063 YP_006093334.1 CDS EcDH1_3430 NC_017625.1 3676660 3677856 R KEGG: sbc:SbBS512_E0166 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(3676660..3677856) Escherichia coli DH1 12707064 YP_006093335.1 CDS EcDH1_3431 NC_017625.1 3677948 3678505 R PFAM: ribosome recycling factor; KEGG: sdy:SDY_0188 ribosome recycling factor; ribosome recycling factor complement(3677948..3678505) Escherichia coli DH1 12707065 YP_006093336.1 CDS EcDH1_3432 NC_017625.1 3678797 3679522 R TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sbc:SbBS512_E0164 UMP kinase; uridylate kinase complement(3678797..3679522) Escherichia coli DH1 12707066 YP_006093337.1 CDS EcDH1_3433 NC_017625.1 3679669 3680520 R TIGRFAM: translation elongation factor Ts; PFAM: ubiquitin-associated- domain-containing protein; Translation elongation factor EFTs/EF1B dimerisation; KEGG: sdy:SDY_0186 elongation factor Ts; translation elongation factor Ts complement(3679669..3680520) Escherichia coli DH1 12707067 YP_006093338.1 CDS EcDH1_3434 NC_017625.1 3680778 3681503 R PFAM: ribosomal protein S2; KEGG: sdy:SDY_0185 30S ribosomal protein S2; 30S ribosomal protein S2 complement(3680778..3681503) Escherichia coli DH1 12707068 YP_006093339.1 CDS EcDH1_3435 NC_017625.1 3681871 3682665 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sdy:SDY_0184 methionine aminopeptidase; methionine aminopeptidase 3681871..3682665 Escherichia coli DH1 12707069 YP_006093340.1 CDS EcDH1_3436 NC_017625.1 3682727 3685399 D KEGG: sbc:SbBS512_E0159 protein-P-II uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase beta domain protein region; protein of unknown function DUF294 nucleotidyltransferase putative; metal-dependent phosphohydrolase HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase HD region; UTP-GlnB uridylyltransferase, GlnD 3682727..3685399 Escherichia coli DH1 12707070 YP_006093341.1 CDS EcDH1_3437 NC_017625.1 3685430 3686254 D KEGG: ssn:SSON_0178 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 3685430..3686254 Escherichia coli DH1 12707071 YP_006093342.1 CDS EcDH1_3438 NC_017625.1 3686308 3687120 D PFAM: metallophosphoesterase; KEGG: sbo:SBO_0153 phosphodiesterase YaeI; metallophosphoesterase 3686308..3687120 Escherichia coli DH1 12707072 YP_006093343.1 CDS EcDH1_3439 NC_017625.1 3687282 3687668 D KEGG: sdy:SDY_0181 putative structural protein; putative structural protein 3687282..3687668 Escherichia coli DH1 12707073 YP_006093344.1 CDS EcDH1_3440 NC_017625.1 3687757 3688914 R PFAM: sugar diacid recognition domain protein; KEGG: ssn:SSON_0175 carbohydrate diacid transcriptional activator CdaR; transcriptional regulator CdaR complement(3687757..3688914) Escherichia coli DH1 12707074 YP_006093345.1 CDS EcDH1_3441 NC_017625.1 3689069 3690493 R KEGG: sbc:SbBS512_E0154 protease Do; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do complement(3689069..3690493) Escherichia coli DH1 12707075 YP_006093346.1 CDS EcDH1_3442 NC_017625.1 3690623 3692140 R KEGG: sfv:SFV_0145 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; deoxyguanosinetriphosphate triphosphohydrolase complement(3690623..3692140) Escherichia coli DH1 12707076 YP_006093347.1 CDS EcDH1_3443 NC_017625.1 3692224 3692922 D PFAM: purine or other phosphorylase family 1; KEGG: sdy:SDY_0175 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Adenosylhomocysteine nucleosidase 3692224..3692922 Escherichia coli DH1 12707077 YP_006093348.1 CDS EcDH1_3444 NC_017625.1 3692915 3693715 D PFAM: periplasmic binding protein; KEGG: ssn:SSON_0170 vitamin B12-transporter protein BtuF; periplasmic binding protein 3692915..3693715 Escherichia coli DH1 12707078 YP_006093349.1 CDS EcDH1_3445 NC_017625.1 3693753 3694376 D PFAM: protein of unknown function UPF0126; KEGG: sbc:SbBS512_E0149 hypothetical protein; hypothetical protein 3693753..3694376 Escherichia coli DH1 12707079 YP_006093350.1 CDS EcDH1_3446 NC_017625.1 3694423 3694767 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sdy:SDY_0172 hypothetical protein; iron-sulfur cluster assembly accessory protein complement(3694423..3694767) Escherichia coli DH1 12707080 YP_006093351.1 CDS EcDH1_3447 NC_017625.1 3694849 3696270 R PFAM: Chloride channel core; KEGG: ssn:SSON_0167 chloride channel protein; chloride channel protein complement(3694849..3696270) Escherichia coli DH1 12707081 YP_006093352.1 CDS EcDH1_3448 NC_017625.1 3696495 3697775 D TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: ssn:SSON_0166 glutamate-1-semialdehyde aminotransferase; glutamate-1-semialdehyde-2,1-aminomutase 3696495..3697775 Escherichia coli DH1 12707082 YP_006093353.1 CDS EcDH1_3449 NC_017625.1 3697933 3699915 R PFAM: transport system permease protein; KEGG: sfv:SFV_0138 iron-hydroxamate transporter permease subunit; transport system permease complement(3697933..3699915) Escherichia coli DH1 12707083 YP_006093354.1 CDS EcDH1_3450 NC_017625.1 3699912 3700802 R PFAM: periplasmic binding protein; KEGG: sbc:SbBS512_E0144 ferrichrome-binding periplasmic protein FhuD; periplasmic binding protein complement(3699912..3700802) Escherichia coli DH1 12707084 YP_006093355.1 CDS EcDH1_3451 NC_017625.1 3700802 3701599 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0167 iron-hydroxamate transporter ATP-binding subunit; ABC transporter complement(3700802..3701599) Escherichia coli DH1 12707085 YP_006093356.1 CDS EcDH1_3452 NC_017625.1 3701650 3703893 R TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sfx:S0145 ferrichrome outer membrane transporter; TonB-dependent siderophore receptor complement(3701650..3703893) Escherichia coli DH1 12707086 YP_006093357.1 CDS EcDH1_3453 NC_017625.1 3704113 3706647 R KEGG: sfv:SFV_0134 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; penicillin-binding protein 1B complement(3704113..3706647) Escherichia coli DH1 12707087 YP_006093358.1 CDS EcDH1_3454 NC_017625.1 3706843 3709317 R KEGG: sbo:SBO_0137 ATP-dependent RNA helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent domain protein; SMART: DEAD-like helicases; ATP-dependent helicase HrpB complement(3706843..3709317) Escherichia coli DH1 12707088 YP_006093359.1 CDS EcDH1_3455 NC_017625.1 3709346 3709876 D TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase HXTX; KEGG: ssn:SSON_0159 hypothetical protein; 2'-5' RNA ligase 3709346..3709876 Escherichia coli DH1 12707089 YP_006093360.1 CDS EcDH1_3456 NC_017625.1 3709891 3710595 D PFAM: sugar fermentation stimulation protein; KEGG: sfx:S0141 sugar fermentation stimulation protein A; sugar fermentation stimulation protein 3709891..3710595 Escherichia coli DH1 12707090 YP_006093361.1 CDS EcDH1_3457 NC_017625.1 3710773 3711228 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger DksA/TraR C4-type; KEGG: esa:ESA_03195 DnaK transcriptional regulator DksA; TraR/DksA family transcriptional regulator 3710773..3711228 Escherichia coli DH1 12707091 YP_006093362.1 CDS EcDH1_3458 NC_017625.1 3711265 3712191 D PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sbc:SbBS512_E0135 glutamyl-Q tRNA(Asp) synthetase; Glutamate--tRNA ligase 3711265..3712191 Escherichia coli DH1 12707092 YP_006093363.1 CDS EcDH1_3459 NC_017625.1 3712284 3713648 D KEGG: sbo:SBO_0132 poly(A) polymerase I; TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 3712284..3713648 Escherichia coli DH1 12707093 YP_006093364.1 CDS EcDH1_3460 NC_017625.1 3713645 3714124 D KEGG: ssn:SSON_0154 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 3713645..3714124 Escherichia coli DH1 12707094 YP_006093365.1 CDS EcDH1_3461 NC_017625.1 3714494 3715078 D PFAM: Fimbrial protein; KEGG: ssn:SSON_0153 putative fimbrial-like protein; Fimbrial protein 3714494..3715078 Escherichia coli DH1 12707095 YP_006093366.1 CDS EcDH1_3462 NC_017625.1 3715176 3715916 D PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sbo:SBO_0126 putative chaperone protein EcpD; Pili assembly chaperone, N-terminal 3715176..3715916 Escherichia coli DH1 12707096 YP_006093367.1 CDS EcDH1_3463 NC_017625.1 3715951 3718548 D PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sew:SeSA_A0207 fimbrial usher protein; fimbrial biogenesis outer membrane usher protein 3715951..3718548 Escherichia coli DH1 12707097 YP_006093368.1 CDS EcDH1_3464 NC_017625.1 3718565 3719134 D KEGG: spq:SPAB_00229 hypothetical protein; hypothetical protein 3718565..3719134 Escherichia coli DH1 12707098 YP_006093369.1 CDS EcDH1_3465 NC_017625.1 3719146 3719751 D PFAM: Fimbrial protein; KEGG: ssn:SSON_0146 putative fimbrial protein; Fimbrial protein 3719146..3719751 Escherichia coli DH1 12707099 YP_006093370.1 CDS EcDH1_3466 NC_017625.1 3719778 3720374 D KEGG: ssn:SSON_0145 putative fimbrial protein; putative fimbrial protein 3719778..3720374 Escherichia coli DH1 12707100 YP_006093371.1 CDS EcDH1_3467 NC_017625.1 3720424 3721662 D PFAM: Fimbrial protein; KEGG: stt:t0184 putative fimbrial-like adhesin protein; Fimbrial protein 3720424..3721662 Escherichia coli DH1 12707101 YP_006093372.1 CDS EcDH1_3468 NC_017625.1 3721776 3722570 D KEGG: sbc:SbBS512_E0127 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 3721776..3722570 Escherichia coli DH1 12707102 YP_006093373.1 CDS EcDH1_3469 NC_017625.1 3722582 3723433 D KEGG: sfv:SFV_0123 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; cytidyltransferase-related domain protein; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 3722582..3723433 Escherichia coli DH1 12707103 YP_006093374.1 CDS EcDH1_3470 NC_017625.1 3723507 3724409 R PFAM: putative transposase YhgA family protein; KEGG: sfv:SFV_0122 hypothetical protein; putative transposase YhgA family protein complement(3723507..3724409) Escherichia coli DH1 12707104 YP_006093375.1 CDS EcDH1_3471 NC_017625.1 3724683 3725063 D KEGG: sdy:SDY_0041 aspartate alpha-decarboxylase; TIGRFAM: aspartate 1-decarboxylase; PFAM: aspartate decarboxylase; aspartate 1-decarboxylase 3724683..3725063 Escherichia coli DH1 12707105 YP_006093376.1 CDS EcDH1_3472 NC_017625.1 3725067 3726296 R PFAM: polysaccharide deacetylase; KEGG: ssn:SSON_0138 hypothetical protein; polysaccharide deacetylase complement(3725067..3726296) Escherichia coli DH1 12707106 YP_006093377.1 CDS EcDH1_3473 NC_017625.1 3726360 3726800 R PFAM: PTS system fructose subfamily IIA component; KEGG: sbc:SbBS512_E0122 PTS system IIA component domain protein; PTS system fructose subfamily transporter subunit IIA complement(3726360..3726800) Escherichia coli DH1 12707107 YP_006093378.1 CDS EcDH1_3474 NC_017625.1 3726905 3727675 R PFAM: ABC-2 type transporter; KEGG: sdy:SDY_0037 hypothetical protein; ABC transporter complement(3726905..3727675) Escherichia coli DH1 12707108 YP_006093379.1 CDS EcDH1_3475 NC_017625.1 3727672 3728598 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_0135 putative ATP-binding component of a transport system; ABC transporter complement(3727672..3728598) Escherichia coli DH1 12707109 YP_006093380.1 CDS EcDH1_3476 NC_017625.1 3728707 3729369 D PFAM: carbonic anhydrase; KEGG: ssn:SSON_0134 carbonic anhydrase; carbonate dehydratase 3728707..3729369 Escherichia coli DH1 12707110 YP_006093381.1 CDS EcDH1_3477 NC_017625.1 3729410 3729958 R KEGG: sfv:SFV_0116 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(3729410..3729958) Escherichia coli DH1 12707111 YP_006093382.1 CDS EcDH1_3478 NC_017625.1 3730152 3732542 D KEGG: sfv:SFV_0115 glucose dehydrogenase; TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; membrane-bound PQQ-dependent dehydrogenase 3730152..3732542 Escherichia coli DH1 12707112 YP_006093383.1 CDS EcDH1_3479 NC_017625.1 3732744 3734294 R PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: sbc:SbBS512_E0116 copper oxidase CueO; multicopper oxidase type 3 complement(3732744..3734294) Escherichia coli DH1 12707113 YP_006093384.1 CDS EcDH1_3480 NC_017625.1 3734460 3734807 D KEGG: sdy:SDY_0029 hypothetical protein; hypothetical protein 3734460..3734807 Escherichia coli DH1 12707114 YP_006093385.1 CDS EcDH1_3481 NC_017625.1 3734913 3735779 D TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: sfv:SFV_0112 spermidine synthase; spermidine synthase 3734913..3735779 Escherichia coli DH1 12707115 YP_006093386.1 CDS EcDH1_3482 NC_017625.1 3735795 3736589 D KEGG: sbc:SbBS512_E0113 S-adenosylmethionine decarboxylase; TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase 3735795..3736589 Escherichia coli DH1 12707116 YP_006093387.1 CDS EcDH1_3483 NC_017625.1 3736627 3736989 R PFAM: conserved hypothetical protein; KEGG: sdy:SDY_0026 hypothetical protein; hypothetical protein complement(3736627..3736989) Escherichia coli DH1 12707117 YP_006093388.1 CDS EcDH1_3484 NC_017625.1 3737165 3739762 R TIGRFAM: aconitate hydratase 2; PFAM: aconitate hydratase domain protein; Aconitase B, N-terminal; KEGG: sbo:SBO_0107 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; aconitate hydratase 2 complement(3737165..3739762) Escherichia coli DH1 12707118 YP_006093389.1 CDS EcDH1_3485 NC_017625.1 3740117 3741970 D KEGG: sbc:SbBS512_E0110 hypothetical protein; hypothetical protein 3740117..3741970 Escherichia coli DH1 12707119 YP_006093390.1 CDS EcDH1_3486 NC_017625.1 3742041 3743465 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sbc:SbBS512_E0109 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(3742041..3743465) Escherichia coli DH1 12707120 YP_006093391.1 CDS EcDH1_3487 NC_017625.1 3743790 3745682 R KEGG: sbc:SbBS512_E0108 dihydrolipoyllysine-residue acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase complement(3743790..3745682) Escherichia coli DH1 12707121 YP_006093392.1 CDS EcDH1_3488 NC_017625.1 3745697 3748360 R TIGRFAM: 2-oxo-acid dehydrogenase E1 subunit, homodimeric type; KEGG: sfx:S0113 pyruvate dehydrogenase subunit E1; 2-oxo-acid dehydrogenase E1 subunit, homodimeric type complement(3745697..3748360) Escherichia coli DH1 12707122 YP_006093393.1 CDS EcDH1_3489 NC_017625.1 3748521 3749285 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbc:SbBS512_E0106 transcriptional regulator, GntR family; regulatory protein GntR HTH complement(3748521..3749285) Escherichia coli DH1 12707123 YP_006093394.1 CDS EcDH1_3490 NC_017625.1 3749829 3751199 D PFAM: amino acid permease-associated region; KEGG: sfx:S0111 aromatic amino acid transporter; amino acid permease 3749829..3751199 Escherichia coli DH1 12707124 YP_006093395.1 CDS EcDH1_3491 NC_017625.1 3751242 3752096 R KEGG: ssn:SSON_0119 regulatory protein AmpE; signaling modulator of AmpD, AmpE complement(3751242..3752096) Escherichia coli DH1 12707125 YP_006093396.1 CDS EcDH1_3492 NC_017625.1 3752093 3752644 R PFAM: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: sdy:SDY_0140 N-acetyl-anhydromuranmyl-L-alanine amidase; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(3752093..3752644) Escherichia coli DH1 12707126 YP_006093397.1 CDS EcDH1_3493 NC_017625.1 3752732 3753625 D KEGG: sbo:SBO_0098 quinolinate phosphoribosyltransferase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 3752732..3753625 Escherichia coli DH1 12707127 YP_006093398.1 CDS EcDH1_3494 NC_017625.1 3753828 3754268 D KEGG: ssn:SSON_0116 putative major pilin subunit; putative major pilin subunit 3753828..3754268 Escherichia coli DH1 12707128 YP_006093399.1 CDS EcDH1_3495 NC_017625.1 3754278 3755663 D PFAM: type II secretion system protein E; KEGG: sdy:SDY_0137 hypothetical protein; type II secretion system protein E 3754278..3755663 Escherichia coli DH1 12707129 YP_006093400.1 CDS EcDH1_3496 NC_017625.1 3755653 3756855 D PFAM: type II secretion system protein; KEGG: sbc:SbBS512_E0098 type IV pilus assembly protein PilC; type II secretion system protein 3755653..3756855 Escherichia coli DH1 12707130 YP_006093401.1 CDS EcDH1_3497 NC_017625.1 3756890 3757933 R Contains selenocysteine; TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: ssn:SSON_0112 guanosine 5'-monophosphate oxidoreductase; guanosine monophosphate reductase complement(3756890..3757933) Escherichia coli DH1 12707131 YP_006093402.1 CDS EcDH1_3498 NC_017625.1 3758158 3758778 D KEGG: sdy:SDY_0133 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 3758158..3758778 Escherichia coli DH1 12707132 YP_006093403.1 CDS EcDH1_3499 NC_017625.1 3758778 3759521 D PFAM: protein of unknown function DUF1342; KEGG: ssn:SSON_0110 hypothetical protein; hypothetical protein 3758778..3759521 Escherichia coli DH1 12707133 YP_006093404.1 CDS EcDH1_3500 NC_017625.1 3759531 3759728 D PFAM: protein of unknown function DUF329; KEGG: sdy:SDY_0131 zinc-binding protein; hypothetical protein 3759531..3759728 Escherichia coli DH1 12707134 YP_006093405.1 CDS EcDH1_3501 NC_017625.1 3759944 3760333 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; KEGG: ssn:SSON_0107 nucleoside triphosphate pyrophosphohydrolase, marked preference for dGTP; mutator MutT protein complement(3759944..3760333) Escherichia coli DH1 12707135 YP_006093406.1 CDS EcDH1_3502 NC_017625.1 3760393 3763098 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: sbc:SbBS512_E0092 preprotein translocase, SecA subunit; Preprotein translocase subunit SecA complement(3760393..3763098) Escherichia coli DH1 12707136 YP_006093407.1 CDS EcDH1_3503 NC_017625.1 3763160 3763747 R PFAM: secretion monitor family proten; KEGG: sfv:SFV_0090 SecA regulator SecM; secretion monitor family proten complement(3763160..3763747) Escherichia coli DH1 12707137 YP_006093408.1 CDS EcDH1_3504 NC_017625.1 3763903 3764820 R PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; KEGG: sdy:SDY_0126 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; UDP-3-0-acyl N-acetylglucosamine deacetylase complement(3763903..3764820) Escherichia coli DH1 12707138 YP_006093409.1 CDS EcDH1_3505 NC_017625.1 3764921 3766072 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: sdy:SDY_0125 cell division protein FtsZ; cell division protein FtsZ complement(3764921..3766072) Escherichia coli DH1 12707139 YP_006093410.1 CDS EcDH1_3506 NC_017625.1 3766133 3767395 R PFAM: cell division protein FtsA; KEGG: sdy:SDY_0124 cell division protein FtsA; cell division protein FtsA complement(3766133..3767395) Escherichia coli DH1 12707140 YP_006093411.1 CDS EcDH1_3507 NC_017625.1 3767392 3768222 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein FtsQ-type; KEGG: sbc:SbBS512_E0086 cell division protein FtsQ; cell division protein FtsQ complement(3767392..3768222) Escherichia coli DH1 12707141 YP_006093412.1 CDS EcDH1_3508 NC_017625.1 3768224 3769144 R KEGG: ssn:SSON_0100 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase complement(3768224..3769144) Escherichia coli DH1 12707142 YP_006093413.1 CDS EcDH1_3509 NC_017625.1 3769137 3770612 R TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfv:SFV_0084 UDP-N-acetylmuramate--L-alanine ligase; UDP-N-acetylmuramate--L-alanine ligase complement(3769137..3770612) Escherichia coli DH1 12707143 YP_006093414.1 CDS EcDH1_3510 NC_017625.1 3770666 3771733 R KEGG: sbo:SBO_0078 N-acetylglucosaminyl transferase; TIGRFAM: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: glycosyl transferase family 28; Glycosyltransferase 28 domain; UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase complement(3770666..3771733) Escherichia coli DH1 12707144 YP_006093415.1 CDS EcDH1_3511 NC_017625.1 3771730 3772974 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: sdy:SDY_0119 FtsW; cell division protein FtsW complement(3771730..3772974) Escherichia coli DH1 12707145 YP_006093416.1 CDS EcDH1_3512 NC_017625.1 3772974 3774290 R TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sdy:SDY_0118 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(3772974..3774290) Escherichia coli DH1 12707146 YP_006093417.1 CDS EcDH1_3513 NC_017625.1 3774293 3775375 R KEGG: sbc:SbBS512_E0080 phospho-N-acetylmuramoyl-pentapeptide-transferase; TIGRFAM: phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide transferase; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3774293..3775375) Escherichia coli DH1 12707147 YP_006093418.1 CDS EcDH1_3514 NC_017625.1 3775369 3776727 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sbc:SbBS512_E0079 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase complement(3775369..3776727) Escherichia coli DH1 12707148 YP_006093419.1 CDS EcDH1_3515 NC_017625.1 3776724 3778211 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfx:S0084 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase complement(3776724..3778211) Escherichia coli DH1 12707149 YP_006093420.1 CDS EcDH1_3516 NC_017625.1 3778198 3779964 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: sdy:SDY_0114 penicillin-binding protein 3; peptidoglycan glycosyltransferase complement(3778198..3779964) Escherichia coli DH1 12707150 YP_006093421.1 CDS EcDH1_3517 NC_017625.1 3779980 3780345 R PFAM: cell division protein FtsL; KEGG: sdy:SDY_0113 cell division protein FtsL; cell division protein FtsL complement(3779980..3780345) Escherichia coli DH1 12707151 YP_006093422.1 CDS EcDH1_3518 NC_017625.1 3780342 3781283 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: sbc:SbBS512_E0075 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(3780342..3781283) Escherichia coli DH1 12707152 YP_006093423.1 CDS EcDH1_3519 NC_017625.1 3781285 3781743 R TIGRFAM: MraZ protein; PFAM: protein of unknown function UPF0040; KEGG: sbc:SbBS512_E0074 MraZ protein; MraZ protein complement(3781285..3781743) Escherichia coli DH1 12707153 YP_006093424.1 CDS EcDH1_3520 NC_017625.1 3782345 3783349 R TIGRFAM: D-fructose-responsive transcription factor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E0073 fructose repressor; LacI family transcriptional regulator complement(3782345..3783349) Escherichia coli DH1 12707154 YP_006093425.1 CDS EcDH1_3521 NC_017625.1 3783529 3784020 R TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; acetolactate synthase small subunit; KEGG: sfv:SFV_0069 acetolactate synthase 3 regulatory subunit; acetolactate synthase small subunit complement(3783529..3784020) Escherichia coli DH1 12707155 YP_006093426.1 CDS EcDH1_3522 NC_017625.1 3784023 3785747 R KEGG: ssn:SSON_0084 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; acetolactate synthase large subunit complement(3784023..3785747) Escherichia coli DH1 12707156 YP_006093427.1 CDS EcDH1_3523 NC_017625.1 3786065 3787009 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ssn:SSON_0083 leucine transcriptional activator; LysR family transcriptional regulator complement(3786065..3787009) Escherichia coli DH1 12707157 YP_006093428.1 CDS EcDH1_3524 NC_017625.1 3787848 3789419 D TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: sbc:SbBS512_E0068 2-isopropylmalate synthase; 2-isopropylmalate synthase 3787848..3789419 Escherichia coli DH1 12707158 YP_006093429.1 CDS EcDH1_3525 NC_017625.1 3789419 3790510 D KEGG: sbc:SbBS512_E0067 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3789419..3790510 Escherichia coli DH1 12707159 YP_006093430.1 CDS EcDH1_3526 NC_017625.1 3790513 3791913 D KEGG: sbc:SbBS512_E0066 3-isopropylmalate dehydratase, large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase large subunit 3790513..3791913 Escherichia coli DH1 12707160 YP_006093431.1 CDS EcDH1_3527 NC_017625.1 3791924 3792529 D KEGG: sbc:SbBS512_E0065 3-isopropylmalate dehydratase, small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit 3791924..3792529 Escherichia coli DH1 12707161 YP_006093432.1 CDS EcDH1_3528 NC_017625.1 3792578 3793756 R TIGRFAM: sugar efflux transporter; PFAM: major facilitator superfamily MFS_1; KEGG: sfx:S0067 putative transport protein; sugar efflux transporter complement(3792578..3793756) Escherichia coli DH1 12707162 YP_006093433.1 CDS EcDH1_3529 NC_017625.1 3793858 3793989 R KEGG: cko:CKO_03311 hypothetical protein; hypothetical protein complement(3793858..3793989) Escherichia coli DH1 12707163 YP_006093434.1 CDS EcDH1_3531 NC_017625.1 3795897 3796880 D TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; thiamine ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sdy:SDY_0095 thiamin transporter substrate binding subunit; thiamine ABC transporter substrate-binding protein 3795897..3796880 Escherichia coli DH1 12707165 YP_006093435.1 CDS EcDH1_3532 NC_017625.1 3796856 3798466 D TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S0064 thiamine transporter membrane protein; thiamine ABC transporter inner membrane subunit 3796856..3798466 Escherichia coli DH1 12707166 YP_006093436.1 CDS EcDH1_3533 NC_017625.1 3798450 3799148 D KEGG: sfx:S0063 thiamine transporter ATP-binding subunit; TIGRFAM: ABC transporter, ATPase subunit, ThiQ subfamily; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter ATPase 3798450..3799148 Escherichia coli DH1 12707167 YP_006093437.1 CDS EcDH1_3534 NC_017625.1 3799262 3800026 R PFAM: SNARE associated Golgi protein; KEGG: sbo:SBO_0052 hypothetical protein; hypothetical protein complement(3799262..3800026) Escherichia coli DH1 12707168 YP_006093438.1 CDS EcDH1_3535 NC_017625.1 3800112 3800990 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbo:SBO_0051 DNA-binding transcriptional regulator AraC; AraC family transcriptional regulator complement(3800112..3800990) Escherichia coli DH1 12707169 YP_006093439.1 CDS EcDH1_3536 NC_017625.1 3801329 3803029 D TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: sfx:S0060 ribulokinase; L-ribulokinase 3801329..3803029 Escherichia coli DH1 12707170 YP_006093440.1 CDS EcDH1_3537 NC_017625.1 3803040 3804542 D PFAM: L-arabinose isomerase; KEGG: sbo:SBO_0049 L-arabinose isomerase; L-arabinose isomerase 3803040..3804542 Escherichia coli DH1 12707171 YP_006093441.1 CDS EcDH1_3538 NC_017625.1 3804827 3805522 D KEGG: ssn:SSON_0067 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; L-ribulose-5-phosphate 4-epimerase 3804827..3805522 Escherichia coli DH1 12707172 YP_006093442.1 CDS EcDH1_3539 NC_017625.1 3805597 3807948 D KEGG: sbc:SbBS512_E0052 DNA polymerase II; PFAM: DNA polymerase B exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; DNA-directed DNA polymerase 3805597..3807948 Escherichia coli DH1 12707173 YP_006093443.1 CDS EcDH1_3540 NC_017625.1 3808113 3811019 D PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: sfv:SFV_0051 ATP-dependent helicase HepA; SNF2-related protein 3808113..3811019 Escherichia coli DH1 12707174 YP_006093444.1 CDS EcDH1_3541 NC_017625.1 3811031 3811690 D PFAM: pseudouridine synthase; KEGG: sdy:SDY_0082 23S rRNA/tRNA pseudouridine synthase A; pseudouridine synthase 3811031..3811690 Escherichia coli DH1 12707175 YP_006093445.1 CDS EcDH1_3542 NC_017625.1 3812098 3812256 R KEGG: sdy:SDY_0081 hypothetical protein; hypothetical protein complement(3812098..3812256) Escherichia coli DH1 12707176 YP_006093446.1 CDS EcDH1_3543 NC_017625.1 3812253 3812903 R KEGG: sdy:SDY_0081 hypothetical protein; hypothetical protein complement(3812253..3812903) Escherichia coli DH1 12707177 YP_006093447.1 CDS EcDH1_3544 NC_017625.1 3813198 3814013 R PFAM: heat shock protein DnaJ domain protein; KEGG: sdy:SDY_0080 Dna-J like membrane chaperone protein; heat shock protein DnaJ domain-containing protein complement(3813198..3814013) Escherichia coli DH1 12707178 YP_006093448.1 CDS EcDH1_3545 NC_017625.1 3814268 3816622 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: sbo:SBO_0043 organic solvent tolerance protein; organic solvent tolerance protein 3814268..3816622 Escherichia coli DH1 12707179 YP_006093449.1 CDS EcDH1_3546 NC_017625.1 3816675 3817961 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: sbo:SBO_0042 peptidyl-prolyl cis-trans isomerase SurA; SurA domain-containing protein 3816675..3817961 Escherichia coli DH1 12707180 YP_006093450.1 CDS EcDH1_3547 NC_017625.1 3817961 3818950 D KEGG: ssn:SSON_0060 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 3817961..3818950 Escherichia coli DH1 12707181 YP_006093451.1 CDS EcDH1_3548 NC_017625.1 3818947 3819768 D TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; KEGG: sbo:SBO_0040 dimethyladenosine transferase; dimethyladenosine transferase 3818947..3819768 Escherichia coli DH1 12707182 YP_006093452.1 CDS EcDH1_3549 NC_017625.1 3819771 3820148 D PFAM: ApaG domain protein; KEGG: sdy:SDY_0075 ApaG; ApaG protein 3819771..3820148 Escherichia coli DH1 12707183 YP_006093453.1 CDS EcDH1_3550 NC_017625.1 3820155 3820997 D KEGG: sbc:SbBS512_E0043 bis(5'-nucleosyl)-tetraphosphatase (symmetrical); TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase; bis(5'-nucleosyl)-tetraphosphatase 3820155..3820997 Escherichia coli DH1 12707184 YP_006093454.1 CDS EcDH1_3551 NC_017625.1 3821075 3821665 R PFAM: dihydrofolate reductase region; KEGG: sbc:SbBS512_E0042 dihydrofolate reductase; Dihydrofolate reductase complement(3821075..3821665) Escherichia coli DH1 12707185 YP_006093455.1 CDS EcDH1_3552 NC_017625.1 3821746 3823608 R TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: sbc:SbBS512_E0041 glutathione-regulated potassium-efflux system protein KefC; potassium efflux system protein complement(3821746..3823608) Escherichia coli DH1 12707186 YP_006093456.1 CDS EcDH1_3553 NC_017625.1 3823601 3824131 R PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sfv:SFV_0040 glutathione-regulated potassium-efflux system ancillary protein KefF; NAD(P)H dehydrogenase (quinone) complement(3823601..3824131) Escherichia coli DH1 12707187 YP_006093457.1 CDS EcDH1_3554 NC_017625.1 3824239 3825570 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: sfv:SFV_0039 putative transport protein; major facilitator superfamily protein complement(3824239..3825570) Escherichia coli DH1 12707188 YP_006093458.1 CDS EcDH1_3555 NC_017625.1 3825627 3825914 R KEGG: sdy:SDY_0066 putative ferredoxin; putative ferredoxin complement(3825627..3825914) Escherichia coli DH1 12707189 YP_006093459.1 CDS EcDH1_3556 NC_017625.1 3825911 3827197 R PFAM: monooxygenase FAD-binding; HI0933 family protein; FAD dependent oxidoreductase; KEGG: ssn:SSON_0051 putative oxidoreductase FixC; FAD dependent oxidoreductase complement(3825911..3827197) Escherichia coli DH1 12707190 YP_006093460.1 CDS EcDH1_3557 NC_017625.1 3827248 3828189 R PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ssn:SSON_0050 putative electron transfer flavoprotein FixB; electron transfer flavoprotein subunit alpha complement(3827248..3828189) Escherichia coli DH1 12707191 YP_006093461.1 CDS EcDH1_3558 NC_017625.1 3828204 3828974 R PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: ssn:SSON_0049 putative electron transfer flavoprotein FixA; electron transfer flavoprotein subunit alpha/beta complement(3828204..3828974) Escherichia coli DH1 12707192 YP_006093462.1 CDS EcDH1_3559 NC_017625.1 3829446 3830960 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: ssn:SSON_0048 L-carnitine/gamma-butyrobetaine antiporter; choline/carnitine/betaine transporter 3829446..3830960 Escherichia coli DH1 12707193 YP_006093463.1 CDS EcDH1_3560 NC_017625.1 3830991 3832133 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sdy:SDY_0061 crotonobetainyl-CoA dehydrogenase; acyl-CoA dehydrogenase 3830991..3832133 Escherichia coli DH1 12707194 YP_006093464.1 CDS EcDH1_3561 NC_017625.1 3832262 3833479 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sfx:S0037 crotonobetainyl-CoA:carnitine CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein F 3832262..3833479 Escherichia coli DH1 12707195 YP_006093465.1 CDS EcDH1_3562 NC_017625.1 3833553 3835106 D PFAM: AMP-dependent synthetase and ligase; KEGG: ssn:SSON_0043 putative crotonobetaine/carnitine-CoA ligase; AMP-dependent synthetase and ligase 3833553..3835106 Escherichia coli DH1 12707196 YP_006093466.1 CDS EcDH1_3563 NC_017625.1 3835215 3836000 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sfv:SFV_0030 carnitinyl-CoA dehydratase; Enoyl-CoA hydratase/isomerase 3835215..3836000 Escherichia coli DH1 12707197 YP_006093467.1 CDS EcDH1_3564 NC_017625.1 3836006 3836596 D PFAM: transferase hexapeptide repeat containing protein; KEGG: ssn:SSON_0041 carnitine operon protein CaiE; transferase hexapeptide repeat containing protein 3836006..3836596 Escherichia coli DH1 12707198 YP_006093468.1 CDS EcDH1_3565 NC_017625.1 3836682 3837077 R KEGG: sfv:SFV_0028 DNA-binding transcriptional activator CaiF; DNA-binding transcriptional activator CaiF complement(3836682..3837077) Escherichia coli DH1 12707199 YP_006093469.1 CDS EcDH1_3566 NC_017625.1 3837339 3840560 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: sbo:SBO_0032 carbamoyl phosphate synthase large subunit; carbamoyl-phosphate synthase large subunit complement(3837339..3840560) Escherichia coli DH1 12707200 YP_006093470.1 CDS EcDH1_3567 NC_017625.1 3840578 3841726 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase small chain; KEGG: sbc:SbBS512_E0036 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(3840578..3841726) Escherichia coli DH1 12707201 YP_006093471.1 CDS EcDH1_3568 NC_017625.1 3842182 3843003 R PFAM: dihydrodipicolinate reductase; Dihydrodipicolinate reductase complement(3842182..3843003) Escherichia coli DH1 12707202 YP_006093472.1 CDS EcDH1_3569 NC_017625.1 3843170 3844084 R PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: ssn:SSON_0035 ribonucleoside hydrolase RihC; inosine/uridine-preferring nucleoside hydrolase complement(3843170..3844084) Escherichia coli DH1 12707203 YP_006093473.1 CDS EcDH1_3570 NC_017625.1 3844150 3845100 R KEGG: sdy:SDY_0051 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(3844150..3845100) Escherichia coli DH1 12707204 YP_006093474.1 CDS EcDH1_3571 NC_017625.1 3845102 3845551 R PFAM: peptidylprolyl isomerase FKBP-type; KEGG: sbc:SbBS512_E0032 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(3845102..3845551) Escherichia coli DH1 12707205 YP_006093475.1 CDS EcDH1_3572 NC_017625.1 3845676 3846170 R KEGG: sbc:SbBS512_E0031 signal peptidase II; TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; lipoprotein signal peptidase complement(3845676..3846170) Escherichia coli DH1 12707206 YP_006093476.1 CDS EcDH1_3573 NC_017625.1 3846170 3848986 R TIGRFAM: isoleucyl-tRNA synthetase; KEGG: ssn:SSON_0031 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase complement(3846170..3848986) Escherichia coli DH1 12707207 YP_006093477.1 CDS EcDH1_3574 NC_017625.1 3849029 3849970 R KEGG: sbc:SbBS512_E0029 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF complement(3849029..3849970) Escherichia coli DH1 12707208 YP_006093478.1 CDS EcDH1_3575 NC_017625.1 3850299 3850562 D PFAM: ribosomal protein S20; KEGG: sdy:SDY_0045 30S ribosomal protein S20; 30S ribosomal protein S20 3850299..3850562 Escherichia coli DH1 12707209 YP_006093479.1 CDS EcDH1_3577 NC_017625.1 3851757 3852656 R PFAM: regulatory protein LysR; KEGG: sdy:SDY_0019 transcriptional activator NhaR; LysR family transcriptional regulator complement(3851757..3852656) Escherichia coli DH1 12707211 YP_006093480.1 CDS EcDH1_3578 NC_017625.1 3852722 3853888 R PFAM: Na+/H+ antiporter NhaA; KEGG: sfx:S0018 pH-dependent sodium/proton antiporter; Na+/H+ antiporter NhaA complement(3852722..3853888) Escherichia coli DH1 12707212 YP_006093481.1 CDS EcDH1_3579 NC_017625.1 3854474 3854626 D PFAM: Hok/gef cell toxic protein; KEGG: sbo:SBO_0017 Gef; Hok/gef cell toxic protein 3854474..3854626 Escherichia coli DH1 12707213 YP_006093482.1 CDS EcDH1_3580 NC_017625.1 3854657 3854797 R hypothetical protein complement(3854657..3854797) Escherichia coli DH1 12707214 YP_006093483.1 CDS EcDH1_3581 NC_017625.1 3854820 3855932 R PFAM: transposase IS4 family protein; KEGG: afl:Aflv_2377 transposase; transposase IS4 family protein complement(3854820..3855932) Escherichia coli DH1 12707215 YP_006093484.1 CDS EcDH1_3582 NC_017625.1 3856079 3857209 R TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: sfv:SFV_0013 chaperone protein DnaJ; chaperone protein DnaJ complement(3856079..3857209) Escherichia coli DH1 12707216 YP_006093485.1 CDS EcDH1_3583 NC_017625.1 3857298 3859214 R KEGG: sdy:SDY_0013 chaperone HSP70; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK complement(3857298..3859214) Escherichia coli DH1 12707217 YP_006093486.1 CDS EcDH1_3584 NC_017625.1 3859591 3859995 D KEGG: ssn:SSON_0013 hypothetical protein; hypothetical protein 3859591..3859995 Escherichia coli DH1 12707218 YP_006093487.1 CDS EcDH1_3585 NC_017625.1 3860021 3860734 D PFAM: protein of unknown function UPF0174; KEGG: sfx:S0012 hypothetical protein; hypothetical protein 3860021..3860734 Escherichia coli DH1 12707219 YP_006093488.1 CDS EcDH1_3586 NC_017625.1 3860883 3861449 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: ssn:SSON_0011 hypothetical protein; GPR1/FUN34/yaaH family protein 3860883..3861449 Escherichia coli DH1 12707220 YP_006093489.1 CDS EcDH1_3587 NC_017625.1 3861484 3862071 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: sfv:SFV_0008 molybdenum cofactor biosynthesis protein; molybdenum cofactor synthesis domain-containing protein complement(3861484..3862071) Escherichia coli DH1 12707221 YP_006093490.1 CDS EcDH1_3588 NC_017625.1 3862186 3863139 R KEGG: ssn:SSON_0009 transaldolase B; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase complement(3862186..3863139) Escherichia coli DH1 12707222 YP_006093491.1 CDS EcDH1_3589 NC_017625.1 3863418 3864848 D TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: sbc:SbBS512_E0007 amino acid carrier protein; amino acid carrier protein 3863418..3864848 Escherichia coli DH1 12707223 YP_006093492.1 CDS EcDH1_3590 NC_017625.1 3864918 3865694 D PFAM: protein of unknown function DUF328; KEGG: sfx:S0006 hypothetical protein; hypothetical protein 3864918..3865694 Escherichia coli DH1 12707224 YP_006093493.1 CDS EcDH1_3591 NC_017625.1 3865847 3866143 R KEGG: ssn:SSON_0005 hypothetical protein; hypothetical protein complement(3865847..3866143) Escherichia coli DH1 12707225 YP_006093494.1 CDS EcDH1_3592 NC_017625.1 3866357 3867643 R KEGG: sdy:SDY_0004 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase complement(3866357..3867643) Escherichia coli DH1 12707226 YP_006093495.1 CDS EcDH1_3593 NC_017625.1 3867644 3868576 R TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: sdy:SDY_0003 homoserine kinase; homoserine kinase complement(3867644..3868576) Escherichia coli DH1 12707227 YP_006093496.1 CDS EcDH1_3594 NC_017625.1 3868578 3871040 R KEGG: sfx:S0002 bifunctional aspartokinase I/homeserine dehydrogenase I; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; aspartate kinase complement(3868578..3871040) Escherichia coli DH1 12707228 YP_006093497.1 CDS EcDH1_3595 NC_017625.1 3871401 3872087 R TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sfl:SF4434 putative RNA methyltransferase; RNA methyltransferase, TrmH family, group 1 complement(3871401..3872087) Escherichia coli DH1 12707229 YP_006093498.1 CDS EcDH1_3596 NC_017625.1 3872723 3873439 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_4662 DNA-binding response regulator in two-component regulatory system with ArcB or CpxA; winged helix family two component transcriptional regulator 3872723..3873439 Escherichia coli DH1 12707230 YP_006093499.1 CDS EcDH1_3597 NC_017625.1 3873499 3874851 R PFAM: Inner membrane CreD family protein; KEGG: sfv:SFV_4434 hypothetical protein; Inner membrane CreD family protein complement(3873499..3874851) Escherichia coli DH1 12707231 YP_006093500.1 CDS EcDH1_3598 NC_017625.1 3874909 3876333 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ssn:SSON_4549 sensory histidine kinase CreC; histidine kinase complement(3874909..3876333) Escherichia coli DH1 12707232 YP_006093501.1 CDS EcDH1_3599 NC_017625.1 3876333 3877022 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ssn:SSON_4548 DNA-binding response regulator CreB; winged helix family two component transcriptional regulator complement(3876333..3877022) Escherichia coli DH1 12707233 YP_006093502.1 CDS EcDH1_3600 NC_017625.1 3877035 3877508 R PFAM: CreA family protein; KEGG: sdy:SDY_4658 hypothetical protein; CreA family protein complement(3877035..3877508) Escherichia coli DH1 12707234 YP_006093503.1 CDS EcDH1_3601 NC_017625.1 3877719 3878588 D PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: sbc:SbBS512_E4943 right origin-binding protein; AraC family transcriptional regulator 3877719..3878588 Escherichia coli DH1 12707235 YP_006093504.1 CDS EcDH1_3602 NC_017625.1 3878585 3879232 R PFAM: Phosphoglycerate mutase; KEGG: ssn:SSON_4545 phosphoglycerate mutase; phosphoglycerate mutase complement(3878585..3879232) Escherichia coli DH1 12707236 YP_006093505.1 CDS EcDH1_3603 NC_017625.1 3879284 3879796 D PFAM: protein of unknown function DUF84; KEGG: sbo:SBO_4457 NTPase; hypothetical protein 3879284..3879796 Escherichia coli DH1 12707237 YP_006093506.1 CDS EcDH1_3604 NC_017625.1 3879943 3880239 R TIGRFAM: trp operon repressor; PFAM: Trp repressor; KEGG: sdy:SDY_4654 Trp operon repressor; Trp operon repressor complement(3879943..3880239) Escherichia coli DH1 12707238 YP_006093507.1 CDS EcDH1_3605 NC_017625.1 3880359 3882296 R PFAM: Lytic transglycosylase catalytic; KEGG: sbo:SBO_4455 lytic murein transglycosylase; lytic transglycosylase complement(3880359..3882296) Escherichia coli DH1 12707239 YP_006093508.1 CDS EcDH1_3606 NC_017625.1 3882507 3884174 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_4652 putative ABC transporter ATP-binding protein; ABC transporter 3882507..3884174 Escherichia coli DH1 12707240 YP_006093509.1 CDS EcDH1_3607 NC_017625.1 3884281 3884448 R KEGG: sbc:SbBS512_E4938 hypothetical protein; hypothetical protein complement(3884281..3884448) Escherichia coli DH1 12707241 YP_006093510.1 CDS EcDH1_3608 NC_017625.1 3884482 3885714 R TIGRFAM: cytidyltransferase-related domain protein; nicotinamide-nucleotide adenylyltransferase; PFAM: helix-turn-helix domain protein; KEGG: sbc:SbBS512_E4937 nicotinamide-nucleotide adenylyltransferase; XRE family transcriptional regulator complement(3884482..3885714) Escherichia coli DH1 12707242 YP_006093511.1 CDS EcDH1_3609 NC_017625.1 3885735 3887117 R KEGG: sdy:SDY_4650 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; DNA repair protein RadA complement(3885735..3887117) Escherichia coli DH1 12707243 YP_006093512.1 CDS EcDH1_3610 NC_017625.1 3887166 3888134 R KEGG: sbc:SbBS512_E4935 phosphoserine phosphatase; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; Haloacid dehalogenase domain protein hydrolase type 3; phosphoserine phosphatase SerB complement(3887166..3888134) Escherichia coli DH1 12707244 YP_006093513.1 CDS EcDH1_3611 NC_017625.1 3888240 3888884 D KEGG: sbo:SBO_4450 hypothetical protein; hypothetical protein 3888240..3888884 Escherichia coli DH1 12707245 YP_006093514.1 CDS EcDH1_3612 NC_017625.1 3888912 3889928 D TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; Lipoyltransferase and lipoate-protein ligase; KEGG: ssn:SSON_4536 lipoate-protein ligase A; lipoyltransferase and lipoate-protein ligase 3888912..3889928 Escherichia coli DH1 12707246 YP_006093515.1 CDS EcDH1_3613 NC_017625.1 3889929 3891260 R PFAM: HipA domain protein; KEGG: set:SEN4331A hypothetical protein; HipA domain-containing protein complement(3889929..3891260) Escherichia coli DH1 12707247 YP_006093516.1 CDS EcDH1_3614 NC_017625.1 3891427 3892146 R TIGRFAM: purine nucleoside phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: sbc:SbBS512_E4931 purine nucleoside phosphorylase; purine nucleoside phosphorylase complement(3891427..3892146) Escherichia coli DH1 12707248 YP_006093517.1 CDS EcDH1_3615 NC_017625.1 3892203 3893426 R KEGG: sbc:SbBS512_E4930 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: metalloenzyme domain protein; Phosphopentomutase domain protein; phosphopentomutase complement(3892203..3893426) Escherichia coli DH1 12707249 YP_006093518.1 CDS EcDH1_3616 NC_017625.1 3893478 3894800 R KEGG: sbc:SbBS512_E4929 thymidine phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; thymidine phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; Glycosyl transferase, family 3-like; thymidine phosphorylase complement(3893478..3894800) Escherichia coli DH1 12707250 YP_006093519.1 CDS EcDH1_3617 NC_017625.1 3894927 3895706 R KEGG: sdy:SDY_4641 deoxyribose-phosphate aldolase; TIGRFAM: deoxyribose-phosphate aldolase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; deoxyribose-phosphate aldolase complement(3894927..3895706) Escherichia coli DH1 12707251 YP_006093520.1 CDS EcDH1_3618 NC_017625.1 3895964 3897514 D KEGG: ssn:SSON_4531 hypothetical protein; hypothetical protein 3895964..3897514 Escherichia coli DH1 12707252 YP_006093521.1 CDS EcDH1_3619 NC_017625.1 3897486 3898349 D PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: sfv:SFV_4413 putative activating enzyme; radical SAM protein 3897486..3898349 Escherichia coli DH1 12707253 YP_006093522.1 CDS EcDH1_3620 NC_017625.1 3898769 3899548 R PFAM: TatD-related deoxyribonuclease; KEGG: sfv:SFV_4412 putative deoxyribonuclease YjjV; TatD-related deoxyribonuclease complement(3898769..3899548) Escherichia coli DH1 12707254 YP_006093523.1 CDS EcDH1_3621 NC_017625.1 3899545 3900618 R PFAM: Patatin; KEGG: ssn:SSON_4528 hypothetical protein; patatin complement(3899545..3900618) Escherichia coli DH1 12707255 YP_006093524.1 CDS EcDH1_3622 NC_017625.1 3900740 3900901 R PFAM: protein of unknown function DUF1328; KEGG: sbc:SbBS512_E4920 hypothetical protein; hypothetical protein complement(3900740..3900901) Escherichia coli DH1 12707256 YP_006093525.1 CDS EcDH1_3623 NC_017625.1 3901028 3901633 R PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: ssn:SSON_4526 periplasmic protein; transport-associated complement(3901028..3901633) Escherichia coli DH1 12707257 YP_006093526.1 CDS EcDH1_3624 NC_017625.1 3902026 3903615 R TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sdy:SDY_4634 peptide chain release factor 3; peptide chain release factor 3 complement(3902026..3903615) Escherichia coli DH1 12707258 YP_006093527.1 CDS EcDH1_3625 NC_017625.1 3903706 3904383 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sdy:SDY_4633 nucleotidase; HAD-superfamily hydrolase complement(3903706..3904383) Escherichia coli DH1 12707259 YP_006093528.1 CDS EcDH1_3626 NC_017625.1 3904398 3904844 R KEGG: sfv:SFV_4407 ribosomal-protein-alanine N-acetyltransferase; TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(3904398..3904844) Escherichia coli DH1 12707260 YP_006093529.1 CDS EcDH1_3627 NC_017625.1 3904813 3905226 R KEGG: sdy:SDY_4631 DNA polymerase III subunit psi; TIGRFAM: DNA polymerase III, psi subunit; PFAM: DNA polymerase III psi subunit; DNA polymerase III subunit psi complement(3904813..3905226) Escherichia coli DH1 12707261 YP_006093530.1 CDS EcDH1_3628 NC_017625.1 3905329 3906360 D PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; Methyltransferase small domain protein; KEGG: sdy:SDY_4630 16S ribosomal RNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase 3905329..3906360 Escherichia coli DH1 12707262 YP_006093531.1 CDS EcDH1_3629 NC_017625.1 3906989 3907225 R PFAM: protein of unknown function DUF1435; KEGG: sfv:SFV_4401 putative inner membrane protein; hypothetical protein complement(3906989..3907225) Escherichia coli DH1 12707266 YP_006093532.1 CDS EcDH1_3630 NC_017625.1 3907366 3908154 D PFAM: ferric iron reductase; KEGG: sbo:SBO_4427 ferric iron reductase involved in ferric hydroximate transport; ferric iron reductase 3907366..3908154 Escherichia coli DH1 12707267 YP_006093533.1 CDS EcDH1_3631 NC_017625.1 3908192 3908869 R PFAM: regulatory protein LuxR; KEGG: sfv:SFV_4399 DNA-binding transcriptional activator BglJ; LuxR family transcriptional regulator complement(3908192..3908869) Escherichia coli DH1 12707268 YP_006093534.1 CDS EcDH1_3632 NC_017625.1 3908827 3909552 R PFAM: regulatory protein LuxR; KEGG: sbo:SBO_4425 putative regulator; LuxR family transcriptional regulator complement(3908827..3909552) Escherichia coli DH1 12707269 YP_006093535.1 CDS EcDH1_3633 NC_017625.1 3910171 3910941 D PFAM: protein of unknown function DUF1212; KEGG: sfv:SFV_4395 putative structural protein; hypothetical protein 3910171..3910941 Escherichia coli DH1 12707270 YP_006093536.1 CDS EcDH1_3634 NC_017625.1 3910932 3911405 D KEGG: sfv:SFV_4394 hypothetical protein; hypothetical protein 3910932..3911405 Escherichia coli DH1 12707271 YP_006093537.1 CDS EcDH1_3635 NC_017625.1 3911512 3912051 D KEGG: sbc:SbBS512_E4902 primosomal protein 1; primosomal protein 1 3911512..3912051 Escherichia coli DH1 12707272 YP_006093538.1 CDS EcDH1_3636 NC_017625.1 3912054 3912791 D SMART: AAA ATPase; KEGG: sbc:SbBS512_E4901 DNA replication protein DnaC; AAA ATPase 3912054..3912791 Escherichia coli DH1 12707273 YP_006093539.1 CDS EcDH1_3637 NC_017625.1 3912840 3913334 D KEGG: sbc:SbBS512_E4900 hypothetical protein; hypothetical protein 3912840..3913334 Escherichia coli DH1 12707274 YP_006093540.1 CDS EcDH1_3638 NC_017625.1 3913588 3915879 D PFAM: sulfatase; KEGG: ssn:SSON_4505 phosphoglycerol transferase I; Phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase 3913588..3915879 Escherichia coli DH1 12707275 YP_006093541.1 CDS EcDH1_3639 NC_017625.1 3916017 3917039 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_4504 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein complement(3916017..3917039) Escherichia coli DH1 12707276 YP_006093542.1 CDS EcDH1_3640 NC_017625.1 3917178 3918092 D PFAM: GntR domain protein; KEGG: eca:ECA4381 putative DNA-binding protein; GntR family transcriptional regulator 3917178..3918092 Escherichia coli DH1 12707277 YP_006093543.1 CDS EcDH1_3641 NC_017625.1 3918307 3919668 D PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_4387 putative transport protein; major facilitator superfamily protein 3918307..3919668 Escherichia coli DH1 12707278 YP_006093544.1 CDS EcDH1_3642 NC_017625.1 3919717 3921372 R PFAM: ligand binding Tar domain protein; histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: sbo:SBO_4414 methyl-accepting chemotaxis protein I; methyl-accepting chemotaxis sensory transducer complement(3919717..3921372) Escherichia coli DH1 12707279 YP_006093545.1 CDS EcDH1_3643 NC_017625.1 3921750 3923900 D PFAM: carbon starvation protein CstA; KEGG: sbc:SbBS512_E4880 carbon starvation family protein; carbon starvation protein CstA 3921750..3923900 Escherichia coli DH1 12707280 YP_006093546.1 CDS EcDH1_3644 NC_017625.1 3923950 3924153 D PFAM: protein of unknown function DUF466; KEGG: sdy:SDY_4606 hypothetical protein; hypothetical protein 3923950..3924153 Escherichia coli DH1 12707281 YP_006093547.1 CDS EcDH1_3645 NC_017625.1 3924164 3925120 D PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: sbc:SbBS512_E4878 CobW/P47K family protein; cobalamin synthesis protein P47K 3924164..3925120 Escherichia coli DH1 12707282 YP_006093548.1 CDS EcDH1_3646 NC_017625.1 3925166 3926080 R PFAM: restriction endonuclease; KEGG: ypb:YPTS_4095 restriction endonuclease; restriction endonuclease complement(3925166..3926080) Escherichia coli DH1 12707283 YP_006093549.1 CDS EcDH1_3648 NC_017625.1 3929981 3931570 D PFAM: N-6 DNA methylase; KEGG: spq:SPAB_05694 hypothetical protein; N-6 DNA methylase 3929981..3931570 Escherichia coli DH1 12707285 YP_006093550.1 CDS EcDH1_3649 NC_017625.1 3931567 3932961 D PFAM: restriction modification system DNA specificity domain; KEGG: sek:SSPA4034 subunit S of type I restriction-modification system; restriction modification system DNA specificity domain-containing protein 3931567..3932961 Escherichia coli DH1 12707286 YP_006093551.1 CDS EcDH1_3650 NC_017625.1 3933189 3933530 D PFAM: Domain of unknown function DUF1813 HSP20-like; KEGG: sfv:SFV_4364 endoribonuclease SymE; hypothetical protein 3933189..3933530 Escherichia coli DH1 12707287 YP_006093552.1 CDS EcDH1_3651 NC_017625.1 3933674 3935071 D PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: aba:Acid345_3754 ATPase associated with various cellular activities, AAA_5; ATPase 3933674..3935071 Escherichia coli DH1 12707288 YP_006093553.1 CDS EcDH1_3652 NC_017625.1 3935071 3936117 D KEGG: aba:Acid345_3753 5-methylcytosine-specific restriction enzyme subunit McrC; 5-methylcytosine-specific restriction enzyme subunit McrC 3935071..3936117 Escherichia coli DH1 12707289 YP_006093554.1 CDS EcDH1_3653 NC_017625.1 3936174 3938894 R KEGG: sek:SSPA4005 hypothetical protein; hypothetical protein complement(3936174..3938894) Escherichia coli DH1 12707290 YP_006093555.1 CDS EcDH1_3654 NC_017625.1 3939098 3940615 R KEGG: sek:SSPA4006 hypothetical protein; hypothetical protein complement(3939098..3940615) Escherichia coli DH1 12707291 YP_006093556.1 CDS EcDH1_3655 NC_017625.1 3941114 3941278 R PFAM: protein of unknown function DUF1127; KEGG: sdy:SDY_4602 hypothetical protein; hypothetical protein complement(3941114..3941278) Escherichia coli DH1 12707292 YP_006093557.1 CDS EcDH1_3656 NC_017625.1 3941455 3942867 D PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: sdy:SDY_4601 putative regulator; DeoR family transcriptional regulator 3941455..3942867 Escherichia coli DH1 12707293 YP_006093558.1 CDS EcDH1_3658 NC_017625.1 3944510 3945742 D PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4767 multidrug resistance protein MdtM; major facilitator superfamily protein 3944510..3945742 Escherichia coli DH1 12707295 YP_006093559.1 CDS EcDH1_3659 NC_017625.1 3945783 3947063 D PFAM: protein of unknown function DUF445; KEGG: sbc:SbBS512_E4768 putatitve membrane protein; hypothetical protein 3945783..3947063 Escherichia coli DH1 12707296 YP_006093560.1 CDS EcDH1_3660 NC_017625.1 3947179 3948330 D PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: cko:CKO_03458 hypothetical protein; 2-hydroxyglutaryl-CoA dehydratase subunit D 3947179..3948330 Escherichia coli DH1 12707297 YP_006093561.1 CDS EcDH1_3661 NC_017625.1 3948340 3949107 D TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sbc:SbBS512_E4770 (R)-2-hydroxyglutaryl-CoA dehydratase activator; CoA-substrate-specific enzyme activase 3948340..3949107 Escherichia coli DH1 12707298 YP_006093562.1 CDS EcDH1_3662 NC_017625.1 3949104 3949361 D KEGG: sbc:SbBS512_E4771 hypothetical protein; hypothetical protein 3949104..3949361 Escherichia coli DH1 12707299 YP_006093563.1 CDS EcDH1_3663 NC_017625.1 3949315 3950286 D PFAM: SdiA-regulated domain protein; KEGG: sbo:SBO_4384 hypothetical protein; SdiA-regulated domain-containing protein 3949315..3950286 Escherichia coli DH1 12707300 YP_006093564.1 CDS EcDH1_3664 NC_017625.1 3950354 3951532 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4773 transporter, major facilitator family; hypothetical protein 3950354..3951532 Escherichia coli DH1 12707301 YP_006093565.1 CDS EcDH1_3665 NC_017625.1 3951545 3952099 R PFAM: phosphotransferase KptA/Tpt1; KEGG: sbc:SbBS512_E4774 RNA 2'-phosphotransferase; phosphate acetyltransferase complement(3951545..3952099) Escherichia coli DH1 12707302 YP_006093566.1 CDS EcDH1_3666 NC_017625.1 3952349 3953032 D PFAM: nucleoside recognition domain protein; KEGG: sbc:SbBS512_E4775 putative transporter; nucleoside recognition domain-containing protein 3952349..3953032 Escherichia coli DH1 12707303 YP_006093567.1 CDS EcDH1_3667 NC_017625.1 3953029 3953490 D PFAM: nucleoside recognition domain protein; KEGG: sbo:SBO_4380 hypothetical protein; nucleoside recognition domain-containing protein 3953029..3953490 Escherichia coli DH1 12707304 YP_006093568.1 CDS EcDH1_3668 NC_017625.1 3953503 3954675 D KEGG: sbc:SbBS512_E4777 beta-aspartyl peptidase; TIGRFAM: isoaspartyl dipeptidase; PFAM: amidohydrolase; Amidohydrolase 3; isoaspartyl dipeptidase 3953503..3954675 Escherichia coli DH1 12707305 YP_006093569.1 CDS EcDH1_3669 NC_017625.1 3954740 3955651 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sfv:SFV_4199 putative DNA-binding transcriptional regulator; LysR family transcriptional regulator 3954740..3955651 Escherichia coli DH1 12707306 YP_006093570.1 CDS EcDH1_3670 NC_017625.1 3955644 3956036 R PFAM: GPW/gp25 family protein; KEGG: sbc:SbBS512_E4778 hypothetical protein; GPW/gp25 family protein complement(3955644..3956036) Escherichia coli DH1 12707307 YP_006093571.1 CDS EcDH1_3671 NC_017625.1 3956354 3956455 R hypothetical protein complement(3956354..3956455) Escherichia coli DH1 12707308 YP_006093572.1 CDS EcDH1_3672 NC_017625.1 3956709 3957539 D KEGG: ssn:SSON_4480 hypothetical protein; hypothetical protein 3956709..3957539 Escherichia coli DH1 12707309 YP_006093573.1 CDS EcDH1_3673 NC_017625.1 3957680 3958453 R PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sbc:SbBS512_E4789 transcriptional regulator, GntR family; regulatory protein GntR HTH complement(3957680..3958453) Escherichia coli DH1 12707310 YP_006093574.1 CDS EcDH1_3674 NC_017625.1 3958668 3960128 R PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: ssn:SSON_4478 D-mannonate oxidoreductase; mannitol dehydrogenase domain-containing protein complement(3958668..3960128) Escherichia coli DH1 12707311 YP_006093575.1 CDS EcDH1_3675 NC_017625.1 3960209 3961393 R KEGG: sfv:SFV_4204 mannonate dehydratase; TIGRFAM: mannonate dehydratase; PFAM: Mannonate dehydratase; Xylose isomerase domain protein TIM barrel; mannonate dehydratase complement(3960209..3961393) Escherichia coli DH1 12707312 YP_006093576.1 CDS EcDH1_3676 NC_017625.1 3961733 3963076 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: sfv:SFV_4205 fructuronate transporter; gluconate transporter 3961733..3963076 Escherichia coli DH1 12707313 YP_006093577.1 CDS EcDH1_3677 NC_017625.1 3963319 3964221 R PFAM: Fimbrial protein; FimH mannose-binding domain protein; KEGG: sfv:SFV_4206 FimH protein precursor; FimH mannose-binding domain protein complement(3963319..3964221) Escherichia coli DH1 12707314 YP_006093578.1 CDS EcDH1_3678 NC_017625.1 3964241 3964744 R PFAM: Fimbrial protein; KEGG: sfv:SFV_4207 minor fimbrial subunit, precursor polypeptide; Fimbrial protein complement(3964241..3964744) Escherichia coli DH1 12707315 YP_006093579.1 CDS EcDH1_3679 NC_017625.1 3964757 3965287 R PFAM: Fimbrial protein; KEGG: sbo:SBO_4368 fimbrial morphology; Fimbrial protein complement(3964757..3965287) Escherichia coli DH1 12707316 YP_006093580.1 CDS EcDH1_3680 NC_017625.1 3965297 3967933 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: sfv:SFV_4209 outer membrane usher protein FimD precursor; fimbrial biogenesis outer membrane usher protein complement(3965297..3967933) Escherichia coli DH1 12707317 YP_006093581.1 CDS EcDH1_3681 NC_017625.1 3968000 3968725 R PFAM: Pili assembly chaperone, N-terminal; Pili assembly chaperone, C-terminal; KEGG: sfx:S4463 periplasmic chaperone; Pili assembly chaperone, N-terminal complement(3968000..3968725) Escherichia coli DH1 12707318 YP_006093582.1 CDS EcDH1_3682 NC_017625.1 3968762 3969301 R PFAM: Fimbrial protein; KEGG: sfx:S4464 fimbrial protein; Fimbrial protein complement(3968762..3969301) Escherichia coli DH1 12707319 YP_006093583.1 CDS EcDH1_3683 NC_017625.1 3969366 3969914 R PFAM: Fimbrial protein; KEGG: sbo:SBO_4364 major type 1 subunit fimbrin; Fimbrial protein complement(3969366..3969914) Escherichia coli DH1 12707320 YP_006093584.1 CDS EcDH1_3684 NC_017625.1 3970396 3970947 R PFAM: integrase family protein; KEGG: sfv:SFV_4214 tyrosine recombinase; integrase family protein complement(3970396..3970947) Escherichia coli DH1 12707321 YP_006093585.1 CDS EcDH1_3686 NC_017625.1 3972246 3972848 R PFAM: integrase family protein; KEGG: sbo:SBO_4362 tyrosine recombinase/inversion of on/off regulator of FimA; integrase family protein complement(3972246..3972848) Escherichia coli DH1 12707323 YP_006093586.1 CDS EcDH1_3687 NC_017625.1 3974304 3975020 D PFAM: Oligogalacturonate-specific porin; KEGG: ssn:SSON_4473 hypothetical protein; Oligogalacturonate-specific porin 3974304..3975020 Escherichia coli DH1 12707324 YP_006093587.1 CDS EcDH1_3688 NC_017625.1 3975040 3976146 D PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: sfv:SFV_4217 hypothetical protein; Kelch repeat-containing protein 3975040..3976146 Escherichia coli DH1 12707325 YP_006093588.1 CDS EcDH1_3689 NC_017625.1 3976211 3977191 D PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: sfv:SFV_4218 hypothetical protein; hypothetical protein 3976211..3977191 Escherichia coli DH1 12707326 YP_006093589.1 CDS EcDH1_3691 NC_017625.1 3979752 3980009 D KEGG: kpn:KPN_00259 putative xanthine dehydrogenase, Fe-S subunit; putative xanthine dehydrogenase, Fe-S subunit 3979752..3980009 Escherichia coli DH1 12707328 YP_006093590.1 CDS EcDH1_3692 NC_017625.1 3980021 3980566 D PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_0758 acetyltransferase; N-acetyltransferase GCN5 3980021..3980566 Escherichia coli DH1 12707329 YP_006093591.1 CDS EcDH1_3693 NC_017625.1 3980622 3981368 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: kpe:KPK_4969 methyltransferase family protein; type 11 methyltransferase 3980622..3981368 Escherichia coli DH1 12707330 YP_006093592.1 CDS EcDH1_3694 NC_017625.1 3982154 3983275 D PFAM: peptidase M42 family protein; KEGG: stm:STM1612 putative cellulase protein; peptidase M42 family protein 3982154..3983275 Escherichia coli DH1 12707331 YP_006093593.1 CDS EcDH1_3695 NC_017625.1 3983272 3983550 D PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: stm:STM1613 putative PTS system enzymeIIB component; PTS system lactose/cellobiose-specific transporter subunit IIB 3983272..3983550 Escherichia coli DH1 12707332 YP_006093594.1 CDS EcDH1_3696 NC_017625.1 3983562 3984875 D TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component; KEGG: stm:STM1614 putative PTS system enzyme IIC component; PTS system galactitol-specific transporter subunit IIC 3983562..3984875 Escherichia coli DH1 12707333 YP_006093595.1 CDS EcDH1_3697 NC_017625.1 3984888 3985694 D PFAM: photosystem I assembly BtpA; KEGG: stm:STM1615 putative nucleoside triphosphatase; photosystem I assembly BtpA 3984888..3985694 Escherichia coli DH1 12707334 YP_006093596.1 CDS EcDH1_3698 NC_017625.1 3985825 3986256 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: stm:STM1616 putative sugar-specific PTS enzyme II; putative PTS IIA-like nitrogen-regulatory protein PtsN 3985825..3986256 Escherichia coli DH1 12707335 YP_006093597.1 CDS EcDH1_3699 NC_017625.1 3986268 3986900 D PFAM: ribulose-phosphate 3-epimerase; KEGG: sew:SeSA_A1734 protein SgcE; Ribulose-phosphate 3-epimerase 3986268..3986900 Escherichia coli DH1 12707336 YP_006093598.1 CDS EcDH1_3700 NC_017625.1 3986917 3987699 D PFAM: regulatory protein DeoR; KEGG: set:SEN1438 putative regulatory protein; DeoR family transcriptional regulator 3986917..3987699 Escherichia coli DH1 12707337 YP_006093599.1 CDS EcDH1_3701 NC_017625.1 3988002 3988790 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sec:SC3463 putative transcriptional regulator; IclR family transcriptional regulator 3988002..3988790 Escherichia coli DH1 12707338 YP_006093600.1 CDS EcDH1_3702 NC_017625.1 3988795 3989700 D PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 3988795..3989700 Escherichia coli DH1 12707339 YP_006093601.1 CDS EcDH1_3703 NC_017625.1 3989711 3991678 D KEGG: bcl:ABC1110 hypothetical protein; TIGRFAM: dehydratase, YjhG/YagF family; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dehydratase, YjhG/YagF family 3989711..3991678 Escherichia coli DH1 12707340 YP_006093602.1 CDS EcDH1_3704 NC_017625.1 3991785 3993134 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; KEGG: esi:Exig_2997 gluconate transporter; gluconate transporter 3991785..3993134 Escherichia coli DH1 12707341 YP_006093603.1 CDS EcDH1_3705 NC_017625.1 3993481 3994467 D PFAM: putative sugar-binding domain protein; KEGG: pmr:PMI1540 transcriptional regulator; DeoR family transcriptional regulator 3993481..3994467 Escherichia coli DH1 12707342 YP_006093604.1 CDS EcDH1_3707 NC_017625.1 3995570 3996091 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ssn:SSON_4465 RNA polymerase sigma factor FecI; ECF subfamily RNA polymerase sigma-24 subunit 3995570..3996091 Escherichia coli DH1 12707344 YP_006093605.1 CDS EcDH1_3708 NC_017625.1 3996088 3997041 D PFAM: FecR protein; KEGG: ssn:SSON_4464 regulator for fec operon FecR; anti-FecI sigma factor FecR 3996088..3997041 Escherichia coli DH1 12707345 YP_006093606.1 CDS EcDH1_3709 NC_017625.1 3997128 3999452 D TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: sdy:SDY_4297 citrate-dependent iron transport, outer membrane receptor; TonB-dependent siderophore receptor 3997128..3999452 Escherichia coli DH1 12707346 YP_006093607.1 CDS EcDH1_3710 NC_017625.1 3999497 4000399 D PFAM: periplasmic binding protein; KEGG: ssn:SSON_4462 iron-dicitrate transporter substrate-binding subunit; periplasmic binding protein 3999497..4000399 Escherichia coli DH1 12707347 YP_006093608.1 CDS EcDH1_3711 NC_017625.1 4000396 4001394 D PFAM: transport system permease protein; ABC-3 protein; KEGG: ssn:SSON_4461 iron-dicitrate transporter permease subunit; transport system permease 4000396..4001394 Escherichia coli DH1 12707348 YP_006093609.1 CDS EcDH1_3712 NC_017625.1 4001391 4002347 D PFAM: transport system permease protein; KEGG: sdy:SDY_4294 iron-dicitrate transporter subunit FecD; transport system permease 4001391..4002347 Escherichia coli DH1 12707349 YP_006093610.1 CDS EcDH1_3713 NC_017625.1 4002348 4003115 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_4459 iron-dicitrate transporter ATP-binding subunit; ABC transporter 4002348..4003115 Escherichia coli DH1 12707350 YP_006093611.1 CDS EcDH1_3716 NC_017625.1 4004863 4005231 D PFAM: transposase IS3/IS911 family protein; KEGG: sfl:SF1439 IS600 ORF1; transposase IS3/IS911 family protein 4004863..4005231 Escherichia coli DH1 12707353 YP_006093612.1 CDS EcDH1_3717 NC_017625.1 4005188 4006339 D PFAM: Integrase catalytic region; KEGG: bac:BamMC406_6641 integrase catalytic region; integrase catalytic subunit 4005188..4006339 Escherichia coli DH1 12707354 YP_006093613.1 CDS EcDH1_3718 NC_017625.1 4006342 4006608 R PFAM: transposase IS3/IS911 family protein; KEGG: sbc:SbBS512_A0303 IS911, transposase orfA; transposase IS3/IS911 family protein complement(4006342..4006608) Escherichia coli DH1 12707355 YP_006093614.1 CDS EcDH1_3719 NC_017625.1 4006829 4007179 D KEGG: ent:Ent638_1538 putative lipoprotein; hypothetical protein 4006829..4007179 Escherichia coli DH1 12707356 YP_006093615.1 CDS EcDH1_3720 NC_017625.1 4007232 4007357 R hypothetical protein complement(4007232..4007357) Escherichia coli DH1 12707357 YP_006093616.1 CDS EcDH1_3721 NC_017625.1 4007400 4008518 R PFAM: Semialdehyde dehydrogenase NAD - binding; oxidoreductase domain protein; Oxidoreductase domain; KEGG: pmu:PM1759 hypothetical protein; oxidoreductase domain-containing protein complement(4007400..4008518) Escherichia coli DH1 12707358 YP_006093617.1 CDS EcDH1_3722 NC_017625.1 4008530 4009747 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: ses:SARI_01868 putative sialic acid transporter; general substrate transporter complement(4008530..4009747) Escherichia coli DH1 12707359 YP_006093618.1 CDS EcDH1_3723 NC_017625.1 4010374 4011702 D PFAM: transposase IS4 family protein; KEGG: ssn:SSON_P173 IS4 ORF; transposase IS4 family protein 4010374..4011702 Escherichia coli DH1 12707360 YP_006093619.1 CDS EcDH1_3725 NC_017625.1 4014305 4015210 R PFAM: Integrase catalytic region; KEGG: sdy:SDY_P215 insertion element IS2 transposase InsD; integrase catalytic subunit complement(4014305..4015210) Escherichia coli DH1 12707362 YP_006093620.1 CDS EcDH1_3726 NC_017625.1 4015168 4015533 R PFAM: transposase IS3/IS911 family protein; KEGG: sdy:SDY_P216 insertion sequence 2 OrfA protein; transposase IS3/IS911 family protein complement(4015168..4015533) Escherichia coli DH1 12707363 YP_006093621.1 CDS EcDH1_3727 NC_017625.1 4015865 4017055 R PFAM: integrase family protein; KEGG: ent:Ent638_0463 phage integrase family protein; integrase family protein complement(4015865..4017055) Escherichia coli DH1 12707364 YP_006093622.1 CDS EcDH1_3728 NC_017625.1 4017596 4018615 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sfv:SFV_4229 putative oxidoreductase; alcohol dehydrogenase GroES domain-containing protein 4017596..4018615 Escherichia coli DH1 12707366 YP_006093623.1 CDS EcDH1_3729 NC_017625.1 4018619 4019182 R KEGG: ssn:SSON_4453 D-gluconate kinase; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; thermoresistant glucokinase family carbohydrate kinase complement(4018619..4019182) Escherichia coli DH1 12707367 YP_006093624.1 CDS EcDH1_3730 NC_017625.1 4019399 4020430 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ssn:SSON_4452 L-idonate 5-dehydrogenase, NAD-binding; alcohol dehydrogenase 4019399..4020430 Escherichia coli DH1 12707368 YP_006093625.1 CDS EcDH1_3731 NC_017625.1 4020454 4021218 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssn:SSON_4451 gluconate 5-dehydrogenase; short-chain dehydrogenase/reductase SDR 4020454..4021218 Escherichia coli DH1 12707369 YP_006093626.1 CDS EcDH1_3732 NC_017625.1 4021280 4022599 D TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ssn:SSON_4450 L-idonate transporter; gluconate transporter 4021280..4022599 Escherichia coli DH1 12707370 YP_006093627.1 CDS EcDH1_3733 NC_017625.1 4022666 4023664 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_4449 L-idonate transcriptional regulator; LacI family transcriptional regulator 4022666..4023664 Escherichia coli DH1 12707371 YP_006093628.1 CDS EcDH1_3734 NC_017625.1 4023742 4025244 D PFAM: protein of unknown function DUF853 NPT hydrolase putative; KEGG: ssn:SSON_4448 hypothetical protein; hypothetical protein 4023742..4025244 Escherichia coli DH1 12707372 YP_006093629.1 CDS EcDH1_3735 NC_017625.1 4025405 4026487 R PFAM: permease YjgP/YjgQ family protein; KEGG: sdy:SDY_4286 hypothetical protein; YjgP/YjgQ family permease complement(4025405..4026487) Escherichia coli DH1 12707373 YP_006093630.1 CDS EcDH1_3736 NC_017625.1 4026487 4027566 R PFAM: permease YjgP/YjgQ family protein; KEGG: sbo:SBO_4179 hypothetical protein; YjgP/YjgQ family permease complement(4026487..4027566) Escherichia coli DH1 12707374 YP_006093631.1 CDS EcDH1_3737 NC_017625.1 4027854 4029365 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: ssn:SSON_4445 leucyl aminopeptidase; leucyl aminopeptidase 4027854..4029365 Escherichia coli DH1 12707375 YP_006093632.1 CDS EcDH1_3738 NC_017625.1 4029525 4029968 D PFAM: DNA polymerase III chi subunit HolC; KEGG: sdy:SDY_4283 DNA polymerase III subunit chi; DNA-directed DNA polymerase 4029525..4029968 Escherichia coli DH1 12707376 YP_006093633.1 CDS EcDH1_3739 NC_017625.1 4029968 4032823 D TIGRFAM: valyl-tRNA synthetase; KEGG: sbo:SBO_4182 valyl-tRNA synthetase; valyl-tRNA synthetase 4029968..4032823 Escherichia coli DH1 12707377 YP_006093634.1 CDS EcDH1_3740 NC_017625.1 4032879 4034075 R PFAM: protein of unknown function DUF898 transmembrane; KEGG: sfx:S4493 hypothetical protein; hypothetical protein complement(4032879..4034075) Escherichia coli DH1 12707378 YP_006093635.1 CDS EcDH1_3741 NC_017625.1 4034268 4034771 D PFAM: GCN5-related N-acetyltransferase; KEGG: sfl:SF4233 hypothetical protein; N-acetyltransferase GCN5 4034268..4034771 Escherichia coli DH1 12707379 YP_006093636.1 CDS EcDH1_3742 NC_017625.1 4034916 4035332 R PFAM: protein of unknown function DUF1260; KEGG: sdy:SDY_4277 hypothetical protein; hypothetical protein complement(4034916..4035332) Escherichia coli DH1 12707380 YP_006093637.1 CDS EcDH1_3743 NC_017625.1 4035494 4036498 D TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: sfx:S4496 ornithine carbamoyltransferase subunit I; ornithine carbamoyltransferase 4035494..4036498 Escherichia coli DH1 12707381 YP_006093638.1 CDS EcDH1_3744 NC_017625.1 4036554 4038368 R KEGG: sbo:SBO_4194 hypothetical protein; hypothetical protein complement(4036554..4038368) Escherichia coli DH1 12707382 YP_006093639.1 CDS EcDH1_3745 NC_017625.1 4038491 4038943 R PFAM: conserved hypothetical protein; KEGG: sfv:SFV_4243 hypothetical protein; hypothetical protein complement(4038491..4038943) Escherichia coli DH1 12707383 YP_006093640.1 CDS EcDH1_3746 NC_017625.1 4039088 4039681 R PFAM: regulatory protein TetR; KEGG: sfv:SFV_4244 hypothetical protein; TetR family transcriptional regulator complement(4039088..4039681) Escherichia coli DH1 12707384 YP_006093641.1 CDS EcDH1_3747 NC_017625.1 4039752 4040465 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sfv:SFV_4245 oxidoreductase; short-chain dehydrogenase/reductase SDR 4039752..4040465 Escherichia coli DH1 12707385 YP_006093642.1 CDS EcDH1_3748 NC_017625.1 4040596 4040991 D PFAM: Endoribonuclease L-PSP; KEGG: ssn:SSON_4428 hypothetical protein; endoribonuclease L-PSP 4040596..4040991 Escherichia coli DH1 12707386 YP_006093643.1 CDS EcDH1_3749 NC_017625.1 4041410 4042345 D KEGG: sdy:SDY_4264 aspartate carbamoyltransferase catalytic subunit; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate carbamoyltransferase 4041410..4042345 Escherichia coli DH1 12707387 YP_006093644.1 CDS EcDH1_3750 NC_017625.1 4042358 4042819 D TIGRFAM: aspartate carbamoyltransferase, regulatory subunit; PFAM: aspartate transcarbamylase regulatory subunit; KEGG: sbc:SbBS512_E4839 aspartate carbamoyltransferase, regulatory subunit; aspartate carbamoyltransferase, regulatory subunit 4042358..4042819 Escherichia coli DH1 12707388 YP_006093645.1 CDS EcDH1_3751 NC_017625.1 4042892 4043278 D TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: sdy:SDY_4262 hypothetical protein; endoribonuclease L-PSP 4042892..4043278 Escherichia coli DH1 12707389 YP_006093646.1 CDS EcDH1_3752 NC_017625.1 4043484 4046180 R KEGG: ssn:SSON_4423 magnesium-transporting ATPase MgtA; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; magnesium-translocating P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; magnesium-translocating P-type ATPase complement(4043484..4046180) Escherichia coli DH1 12707390 YP_006093647.1 CDS EcDH1_3753 NC_017625.1 4046559 4047506 D TIGRFAM: trehalose operon repressor; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ssn:SSON_4422 trehalose repressor; LacI family transcriptional regulator 4046559..4047506 Escherichia coli DH1 12707391 YP_006093648.1 CDS EcDH1_3754 NC_017625.1 4047625 4049046 D TIGRFAM: PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, trehalose-specific IIBC subunit; PTS system, glucose-like IIB subunint; PFAM: phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_4421 trehalose(maltose)-specific PTS system components IIBC; PTS system trehalose-specific transporter subunit IIBC 4047625..4049046 Escherichia coli DH1 12707392 YP_006093649.1 CDS EcDH1_3755 NC_017625.1 4049096 4050751 D KEGG: sfx:S4513 trehalose-6-phosphate hydrolase; TIGRFAM: alpha,alpha-phosphotrehalase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; alpha,alpha-phosphotrehalase 4049096..4050751 Escherichia coli DH1 12707393 YP_006093650.1 CDS EcDH1_3756 NC_017625.1 4051145 4053283 D KEGG: sbc:SbBS512_E4846 anaerobic ribonucleoside-triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: formate C-acetyltransferase glycine radical; ATP-cone domain protein; anaerobic ribonucleoside-triphosphate reductase 4051145..4053283 Escherichia coli DH1 12707394 YP_006093651.1 CDS EcDH1_3757 NC_017625.1 4053441 4053905 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: sdy:SDY_4256 anaerobic ribonucleotide reductase-activating protein; anaerobic ribonucleoside-triphosphate reductase activating protein 4053441..4053905 Escherichia coli DH1 12707395 YP_006093652.1 CDS EcDH1_3758 NC_017625.1 4053950 4054252 R PFAM: cytochrome b562; KEGG: sfv:SFV_4255 cytochrome b(562); cytochrome b562 complement(4053950..4054252) Escherichia coli DH1 12707396 YP_006093653.1 CDS EcDH1_3759 NC_017625.1 4054494 4055846 R PFAM: peptidase U62 modulator of DNA gyrase; KEGG: sdy:SDY_4253 peptidase PmbA; peptidase U62 modulator of DNA gyrase complement(4054494..4055846) Escherichia coli DH1 12707397 YP_006093654.1 CDS EcDH1_3760 NC_017625.1 4055940 4056491 D PFAM: protein of unknown function DUF615; KEGG: ssn:SSON_4415 hypothetical protein; hypothetical protein 4055940..4056491 Escherichia coli DH1 12707398 YP_006093655.1 CDS EcDH1_3761 NC_017625.1 4056647 4058020 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: sfx:S4519 putative ligase; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase complement(4056647..4058020) Escherichia coli DH1 12707399 YP_006093656.1 CDS EcDH1_3762 NC_017625.1 4058196 4059194 D PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: sdy:SDY_4250 fructose-1,6-bisphosphatase; inositol phosphatase/fructose-16-bisphosphatase 4058196..4059194 Escherichia coli DH1 12707400 YP_006093657.1 CDS EcDH1_3763 NC_017625.1 4059227 4060222 R PFAM: inner-membrane translocator; KEGG: sbc:SbBS512_E4853 putative sugar ABC transporter, permease protein; monosaccharide-transporting ATPase complement(4059227..4060222) Escherichia coli DH1 12707401 YP_006093658.1 CDS EcDH1_3764 NC_017625.1 4060209 4061231 R PFAM: inner-membrane translocator; KEGG: ssn:SSON_4411 putative transport system permease protein; monosaccharide-transporting ATPase complement(4060209..4061231) Escherichia coli DH1 12707402 YP_006093659.1 CDS EcDH1_3765 NC_017625.1 4061245 4062747 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_4410 putative ATP-binding component of a transport system; ABC transporter complement(4061245..4062747) Escherichia coli DH1 12707403 YP_006093660.1 CDS EcDH1_3766 NC_017625.1 4062887 4063843 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E4856 putative sugar ABC transporter, periplasmic sugar-binding protein; periplasmic binding protein/LacI transcriptional regulator complement(4062887..4063843) Escherichia coli DH1 12707404 YP_006093661.1 CDS EcDH1_3767 NC_017625.1 4064153 4064683 D PFAM: Inorganic pyrophosphatase; KEGG: sdy:SDY_4462 inorganic pyrophosphatase; inorganic diphosphatase 4064153..4064683 Escherichia coli DH1 12707405 YP_006093662.1 CDS EcDH1_3768 NC_017625.1 4064763 4065077 R PFAM: PemK family protein; KEGG: sdy:SDY_4461 toxin ChpB; transcriptional modulator of MazE/toxin MazF complement(4064763..4065077) Escherichia coli DH1 12707406 YP_006093663.1 CDS EcDH1_3769 NC_017625.1 4065107 4065358 R PFAM: SpoVT/AbrB domain protein; KEGG: sdy:SDY_4460 antitoxin ChpS; transcriptional regulator/antitoxin MazE complement(4065107..4065358) Escherichia coli DH1 12707407 YP_006093664.1 CDS EcDH1_3770 NC_017625.1 4065570 4065911 R PFAM: AIG2 family protein; KEGG: sdy:SDY_4459 hypothetical protein; AIG2 family protein complement(4065570..4065911) Escherichia coli DH1 12707408 YP_006093665.1 CDS EcDH1_3771 NC_017625.1 4065914 4069693 R PFAM: protein of unknown function DUF490; KEGG: ssn:SSON_4406 hypothetical protein; hypothetical protein complement(4065914..4069693) Escherichia coli DH1 12707409 YP_006093666.1 CDS EcDH1_3772 NC_017625.1 4069690 4071423 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: sbc:SbBS512_E4861 outer membrane protein, OMP85 family; surface antigen (D15) complement(4069690..4071423) Escherichia coli DH1 12707410 YP_006093667.1 CDS EcDH1_3773 NC_017625.1 4071629 4072267 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: ssn:SSON_4404 methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 4071629..4072267 Escherichia coli DH1 12707411 YP_006093668.1 CDS EcDH1_3774 NC_017625.1 4072590 4073933 D PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sdy:SDY_4455 putative transport protein; hypothetical protein 4072590..4073933 Escherichia coli DH1 12707412 YP_006093669.1 CDS EcDH1_3775 NC_017625.1 4074012 4074218 R PFAM: protein of unknown function DUF1107; KEGG: sdy:SDY_4454 hypothetical protein; hypothetical protein complement(4074012..4074218) Escherichia coli DH1 12707413 YP_006093670.1 CDS EcDH1_3776 NC_017625.1 4074543 4075097 D PFAM: conserved hypothetical protein; KEGG: sdy:SDY_4453 hypothetical protein; hypothetical protein 4074543..4075097 Escherichia coli DH1 12707414 YP_006093671.1 CDS EcDH1_3777 NC_017625.1 4075160 4076098 R KEGG: sfv:SFV_4272 hypothetical protein; hypothetical protein complement(4075160..4076098) Escherichia coli DH1 12707415 YP_006093672.1 CDS EcDH1_3778 NC_017625.1 4076310 4077050 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: sdy:SDY_4385 PapS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase complement(4076310..4077050) Escherichia coli DH1 12707416 YP_006093673.1 CDS EcDH1_3781 NC_017625.1 4080088 4080468 R PFAM: helix-turn-helix HxlR type; KEGG: sbc:SbBS512_E4753 putative transcriptional regulator; HxlR family transcriptional regulator complement(4080088..4080468) Escherichia coli DH1 12707419 YP_006093674.1 CDS EcDH1_3782 NC_017625.1 4080557 4081417 D PFAM: NmrA family protein; KEGG: sbo:SBO_4231 putative oxidoreductase; NmrA family protein 4080557..4081417 Escherichia coli DH1 12707420 YP_006093675.1 CDS EcDH1_3783 NC_017625.1 4081525 4082490 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4395 putative transmembrane subunit; hypothetical protein 4081525..4082490 Escherichia coli DH1 12707421 YP_006093676.1 CDS EcDH1_3784 NC_017625.1 4082598 4083260 D PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: sdy:SDY_4379 cell morphogenesis/cell wall metabolism regulator; hypothetical protein 4082598..4083260 Escherichia coli DH1 12707422 YP_006093677.1 CDS EcDH1_3785 NC_017625.1 4083305 4084717 R PFAM: amino acid permease-associated region; KEGG: sdy:SDY_4378 D-alanine/D-serine/glycine permease; amino acid permease complement(4083305..4084717) Escherichia coli DH1 12707423 YP_006093678.1 CDS EcDH1_3786 NC_017625.1 4085026 4085646 R PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: sfv:SFV_4280 peptidyl-prolyl cis-trans isomerase; FKBP-type peptidylprolyl isomerase complement(4085026..4085646) Escherichia coli DH1 12707424 YP_006093679.1 CDS EcDH1_3787 NC_017625.1 4085864 4086502 D PFAM: Opacity-associated protein A; Opacity-associated protein A domain protein; KEGG: sdy:SDY_4376 hypothetical protein; Opacity-associated protein A 4085864..4086502 Escherichia coli DH1 12707425 YP_006093680.1 CDS EcDH1_3789 NC_017625.1 4087159 4087953 D KEGG: sbc:SbBS512_E4737 hypothetical protein; hypothetical protein 4087159..4087953 Escherichia coli DH1 12707427 YP_006093681.1 CDS EcDH1_3790 NC_017625.1 4088024 4088473 R PFAM: ribosomal protein L9; KEGG: sbc:SbBS512_E4736 ribosomal protein L9; 50S ribosomal protein L9 complement(4088024..4088473) Escherichia coli DH1 12707428 YP_006093682.1 CDS EcDH1_3791 NC_017625.1 4088515 4088742 R PFAM: ribosomal protein S18; KEGG: kpn:KPN_04596 30S ribosomal protein S18; 30S ribosomal protein S18 complement(4088515..4088742) Escherichia coli DH1 12707429 YP_006093683.1 CDS EcDH1_3792 NC_017625.1 4088747 4089061 R PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sbc:SbBS512_E4734 primosomal replication protein N; ssDNA-binding protein complement(4088747..4089061) Escherichia coli DH1 12707430 YP_006093684.1 CDS EcDH1_3793 NC_017625.1 4089068 4089463 R PFAM: ribosomal protein S6; KEGG: sdy:SDY_4369 30S ribosomal protein S6; 30S ribosomal protein S6 complement(4089068..4089463) Escherichia coli DH1 12707431 YP_006093685.1 CDS EcDH1_3794 NC_017625.1 4089790 4090065 D PFAM: protein of unknown function DUF1471; KEGG: sbc:SbBS512_E4732 hypothetical protein; hypothetical protein 4089790..4090065 Escherichia coli DH1 12707432 YP_006093686.1 CDS EcDH1_3795 NC_017625.1 4090195 4090881 R PFAM: class II aldolase/adducin family protein; KEGG: sfv:SFV_4354 L-ribulose-5-phosphate 4-epimerase; class II aldolase/adducin family protein complement(4090195..4090881) Escherichia coli DH1 12707433 YP_006093687.1 CDS EcDH1_3796 NC_017625.1 4090881 4091735 R KEGG: sbo:SBO_4258 L-xylulose 5-phosphate 3-epimerase; TIGRFAM: hexulose-6-phosphate isomerase; PFAM: Xylose isomerase domain protein TIM barrel; hexulose-6-phosphate isomerase complement(4090881..4091735) Escherichia coli DH1 12707434 YP_006093688.1 CDS EcDH1_3797 NC_017625.1 4091745 4092395 R PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: sdy:SDY_4365 3-keto-L-gulonate-6-phosphate decarboxylase; 3-dehydro-L-gulonate-6-phosphate decarboxylase complement(4091745..4092395) Escherichia coli DH1 12707435 YP_006093689.1 CDS EcDH1_3798 NC_017625.1 4092409 4092873 R PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sdy:SDY_4364 L-ascorbate-specific enzyme IIA component of PTS; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(4092409..4092873) Escherichia coli DH1 12707436 YP_006093690.1 CDS EcDH1_3799 NC_017625.1 4092883 4093188 R PFAM: phosphotransferase system lactose/cellobiose-specific IIB subunit; KEGG: set:SEN4150 putative PTS system IIB protein; PTS system lactose/cellobiose-specific transporter subunit IIB complement(4092883..4093188) Escherichia coli DH1 12707437 YP_006093691.1 CDS EcDH1_3800 NC_017625.1 4093204 4094601 R PFAM: putative sugar-specific permease SgaT/UlaA; KEGG: sdy:SDY_4362 ascorbate-specific PTS system enzyme IIC; putative sugar-specific permease SgaT/UlaA complement(4093204..4094601) Escherichia coli DH1 12707438 YP_006093692.1 CDS EcDH1_3801 NC_017625.1 4094956 4096020 D KEGG: ssn:SSON_4374 putative L-ascorbate 6-phosphate lactonase; putative L-ascorbate 6-phosphate lactonase 4094956..4096020 Escherichia coli DH1 12707439 YP_006093693.1 CDS EcDH1_3802 NC_017625.1 4096128 4096883 D PFAM: regulatory protein DeoR; KEGG: sbc:SbBS512_E4720 transcriptional regulator UlaR; DeoR family transcriptional regulator 4096128..4096883 Escherichia coli DH1 12707440 YP_006093694.1 CDS EcDH1_3803 NC_017625.1 4096880 4097629 R PFAM: phospholipase/Carboxylesterase; KEGG: sdy:SDY_4359 predicted hydrolase; phospholipase/Carboxylesterase complement(4096880..4097629) Escherichia coli DH1 12707441 YP_006093695.1 CDS EcDH1_3804 NC_017625.1 4097811 4098140 D PFAM: protein of unknown function DUF1471; KEGG: sdy:SDY_4358 hypothetical protein; hypothetical protein 4097811..4098140 Escherichia coli DH1 12707442 YP_006093696.1 CDS EcDH1_3805 NC_017625.1 4098289 4098564 D PFAM: protein of unknown function DUF1471; KEGG: sbo:SBO_4267 hypothetical protein; hypothetical protein 4098289..4098564 Escherichia coli DH1 12707443 YP_006093697.1 CDS EcDH1_3806 NC_017625.1 4098681 4100306 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: sfv:SFV_4343 isovaleryl CoA dehydrogenase; acyl-CoA dehydrogenase complement(4098681..4100306) Escherichia coli DH1 12707444 YP_006093698.1 CDS EcDH1_3807 NC_017625.1 4100390 4101553 R PFAM: glutathionylspermidine synthase; KEGG: sdy:SDY_4403 putative synthetase/amidase; glutathionylspermidine synthase complement(4100390..4101553) Escherichia coli DH1 12707445 YP_006093699.1 CDS EcDH1_3808 NC_017625.1 4101556 4102194 R PFAM: protein of unknown function DUF1190; KEGG: sfv:SFV_4341 hypothetical protein; hypothetical protein complement(4101556..4102194) Escherichia coli DH1 12707446 YP_006093700.1 CDS EcDH1_3809 NC_017625.1 4102204 4102602 R PFAM: protein of unknown function DUF350; KEGG: sbc:SbBS512_E4714 putative inner membrane protein; hypothetical protein complement(4102204..4102602) Escherichia coli DH1 12707447 YP_006093701.1 CDS EcDH1_3810 NC_017625.1 4102620 4103279 R KEGG: sbo:SBO_4272 hypothetical protein; hypothetical protein complement(4102620..4103279) Escherichia coli DH1 12707448 YP_006093702.1 CDS EcDH1_3811 NC_017625.1 4103330 4104028 R PFAM: PspA/IM30 family protein; KEGG: sbo:SBO_4273 putative alpha helical protein; phage shock protein A, PspA complement(4103330..4104028) Escherichia coli DH1 12707449 YP_006093703.1 CDS EcDH1_3812 NC_017625.1 4104047 4104448 R KEGG: cak:Caul_1403 hypothetical protein; hypothetical protein complement(4104047..4104448) Escherichia coli DH1 12707450 YP_006093704.1 CDS EcDH1_3813 NC_017625.1 4104575 4105306 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: ssn:SSON_4365 23S rRNA (guanosine-2'-O-)-methyltransferase; TrmH family RNA methyltransferase complement(4104575..4105306) Escherichia coli DH1 12707451 YP_006093705.1 CDS EcDH1_3814 NC_017625.1 4105486 4107927 R KEGG: sfv:SFV_4337 exoribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; VacB and RNase II family 3'-5' exoribonuclease complement(4105486..4107927) Escherichia coli DH1 12707452 YP_006093706.1 CDS EcDH1_3815 NC_017625.1 4107966 4108391 R TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: sdy:SDY_4411 transcriptional repressor NsrR; AsnC family transcriptional regulator complement(4107966..4108391) Escherichia coli DH1 12707453 YP_006093707.1 CDS EcDH1_3816 NC_017625.1 4108596 4109894 R PFAM: adenylosuccinate synthetase; KEGG: sdy:SDY_4412 adenylosuccinate synthetase; Adenylosuccinate synthase complement(4108596..4109894) Escherichia coli DH1 12707454 YP_006093708.1 CDS EcDH1_3817 NC_017625.1 4109998 4110195 R KEGG: sdy:SDY_4413 hypothetical protein; hypothetical protein complement(4109998..4110195) Escherichia coli DH1 12707455 YP_006093709.1 CDS EcDH1_3818 NC_017625.1 4110277 4111281 R TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: sbc:SbBS512_E4706 HflC protein; HflC protein complement(4110277..4111281) Escherichia coli DH1 12707456 YP_006093710.1 CDS EcDH1_3819 NC_017625.1 4111284 4112543 R TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: sbc:SbBS512_E4705 HflK protein; HflK protein complement(4111284..4112543) Escherichia coli DH1 12707457 YP_006093711.1 CDS EcDH1_3820 NC_017625.1 4112629 4113909 R TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: ssn:SSON_4358 putative GTPase HflX; GTP-binding proten HflX complement(4112629..4113909) Escherichia coli DH1 12707458 YP_006093712.1 CDS EcDH1_3821 NC_017625.1 4113985 4114293 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: sbo:SBO_4284 RNA-binding protein Hfq; RNA chaperone Hfq complement(4113985..4114293) Escherichia coli DH1 12707459 YP_006093713.1 CDS EcDH1_3822 NC_017625.1 4114379 4115329 R KEGG: sbo:SBO_4285 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase complement(4114379..4115329) Escherichia coli DH1 12707460 YP_006093714.1 CDS EcDH1_3823 NC_017625.1 4115322 4117169 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: sbc:SbBS512_E4701 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL complement(4115322..4117169) Escherichia coli DH1 12707461 YP_006093715.1 CDS EcDH1_3824 NC_017625.1 4117179 4118516 R PFAM: cell wall hydrolase/autolysin; KEGG: ssn:SSON_4354 N-acetylmuramoyl-L-alanine amidase II; N-acetylmuramoyl-L-alanine amidase complement(4117179..4118516) Escherichia coli DH1 12707462 YP_006093716.1 CDS EcDH1_3825 NC_017625.1 4118535 4118996 R PFAM: protein of unknown function UPF0079; KEGG: sdy:SDY_4421 putative ATPase; hypothetical protein complement(4118535..4118996) Escherichia coli DH1 12707463 YP_006093717.1 CDS EcDH1_3826 NC_017625.1 4118968 4120515 R TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family domain protein; KEGG: sbo:SBO_4290 hypothetical protein; carbohydrate kinase complement(4118968..4120515) Escherichia coli DH1 12707464 YP_006093718.1 CDS EcDH1_3827 NC_017625.1 4120514 4121653 D TIGRFAM: iron-sulfur cluster binding protein; PFAM: domain of unknown function DUF1730; KEGG: sbc:SbBS512_E4697 iron-sulfur cluster binding protein; iron-sulfur cluster binding protein 4120514..4121653 Escherichia coli DH1 12707465 YP_006093719.1 CDS EcDH1_3828 NC_017625.1 4122432 4122977 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: sdy:SDY_4430 oligoribonuclease; Exonuclease RNase T and DNA polymerase III complement(4122432..4122977) Escherichia coli DH1 12707469 YP_006093720.1 CDS EcDH1_3829 NC_017625.1 4123072 4124124 D TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: sbc:SbBS512_E4693 ribosome small subunit-dependent GTPase A; ribosome small subunit-dependent GTPase A 4123072..4124124 Escherichia coli DH1 12707470 YP_006093721.1 CDS EcDH1_3830 NC_017625.1 4124221 4125189 D KEGG: sbc:SbBS512_E4692 phosphatidylserine decarboxylase; TIGRFAM: phosphatidylserine decarboxylase; PFAM: phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase 4124221..4125189 Escherichia coli DH1 12707471 YP_006093722.1 CDS EcDH1_3831 NC_017625.1 4125211 4128534 D PFAM: MscS Mechanosensitive ion channel; KEGG: sbo:SBO_4298 predicted mechanosensitive channel; mechanosensitive ion channel protein MscS 4125211..4128534 Escherichia coli DH1 12707472 YP_006093723.1 CDS EcDH1_3832 NC_017625.1 4128563 4128865 R KEGG: set:SEN4116 exported protein; hypothetical protein complement(4128563..4128865) Escherichia coli DH1 12707473 YP_006093724.1 CDS EcDH1_3833 NC_017625.1 4128874 4129188 R KEGG: sek:SSPA3867 hypothetical protein; hypothetical protein complement(4128874..4129188) Escherichia coli DH1 12707474 YP_006093725.1 CDS EcDH1_3834 NC_017625.1 4129240 4130784 R PFAM: amino acid permease-associated region; KEGG: sdy:SDY_4434 putative transport; amino acid permease complement(4129240..4130784) Escherichia coli DH1 12707475 YP_006093726.1 CDS EcDH1_3835 NC_017625.1 4130961 4131938 R TIGRFAM: lysyl-tRNA synthetase-related protein GenX; PFAM: tRNA synthetase class II (D K and N); KEGG: sdy:SDY_4399 lysyl-tRNA synthetase; lysyl-tRNA synthetase-like protein GenX complement(4130961..4131938) Escherichia coli DH1 12707476 YP_006093727.1 CDS EcDH1_3836 NC_017625.1 4132263 4134071 D KEGG: sdy:SDY_4398 fumarate reductase flavoprotein subunit; TIGRFAM: fumarate reductase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase flavoprotein subunit 4132263..4134071 Escherichia coli DH1 12707477 YP_006093728.1 CDS EcDH1_3837 NC_017625.1 4134064 4134798 D KEGG: sbc:SbBS512_E4685 fumarate reductase, iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; succinate dehydrogenase and fumarate reductase iron-sulfur protein 4134064..4134798 Escherichia coli DH1 12707478 YP_006093729.1 CDS EcDH1_3838 NC_017625.1 4134809 4135204 D PFAM: fumarate reductase subunit C; KEGG: sbc:SbBS512_E4684 fumarate reductase, cytochrome b subunit; fumarate reductase subunit C 4134809..4135204 Escherichia coli DH1 12707479 YP_006093730.1 CDS EcDH1_3839 NC_017625.1 4135215 4135574 D PFAM: fumarate reductase D subunit; KEGG: sdy:SDY_4395 fumarate reductase subunit D; fumarate reductase D subunit 4135215..4135574 Escherichia coli DH1 12707480 YP_006093731.1 CDS EcDH1_3840 NC_017625.1 4135637 4136770 D PFAM: beta-lactamase; KEGG: sbo:SBO_4306 beta-lactamase; Beta-lactamase 4135637..4136770 Escherichia coli DH1 12707481 YP_006093732.1 CDS EcDH1_3841 NC_017625.1 4136859 4137392 D PFAM: Lipocalin-related protein and Bos/Can/Equ allergen; Lipocalin family protein; KEGG: sfv:SFV_4308 outer membrane lipoprotein Blc; lipocalin family protein 4136859..4137392 Escherichia coli DH1 12707482 YP_006093733.1 CDS EcDH1_3842 NC_017625.1 4137389 4137856 R PFAM: small multidrug resistance protein; KEGG: sbo:SBO_4308 SugE; small multidrug resistance protein complement(4137389..4137856) Escherichia coli DH1 12707483 YP_006093734.1 CDS EcDH1_3843 NC_017625.1 4137882 4138028 R PFAM: Entericidin EcnAB; KEGG: sbc:SbBS512_E4679 entericidin B; entericidin EcnAB complement(4137882..4138028) Escherichia coli DH1 12707484 YP_006093735.1 CDS EcDH1_3844 NC_017625.1 4138172 4138270 D hypothetical protein 4138172..4138270 Escherichia coli DH1 12707485 YP_006093736.1 CDS EcDH1_3845 NC_017625.1 4138316 4138882 R TIGRFAM: translation elongation factor P; PFAM: Elongation factor P/YeiP protein; Elongation factor KOW domain protein; Elongation factor P; KEGG: sdy:SDY_4390 elongation factor P; translation elongation factor P complement(4138316..4138882) Escherichia coli DH1 12707486 YP_006093737.1 CDS EcDH1_3846 NC_017625.1 4138924 4139952 D KEGG: sfx:S4569 hypothetical protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 4138924..4139952 Escherichia coli DH1 12707487 YP_006093738.1 CDS EcDH1_3847 NC_017625.1 4140347 4141216 D KEGG: sfv:SFV_4301 hypothetical protein; hypothetical protein 4140347..4141216 Escherichia coli DH1 12707488 YP_006093739.1 CDS EcDH1_3848 NC_017625.1 4141419 4141772 R KEGG: sdy:SDY_4450 hypothetical protein; hypothetical protein complement(4141419..4141772) Escherichia coli DH1 12707489 YP_006093740.1 CDS EcDH1_3849 NC_017625.1 4141910 4143556 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: sdy:SDY_4449 chaperonin GroEL; chaperonin GroEL complement(4141910..4143556) Escherichia coli DH1 12707490 YP_006093741.1 CDS EcDH1_3850 NC_017625.1 4143600 4143893 R PFAM: chaperonin Cpn10; KEGG: sdy:SDY_4448 co-chaperonin GroES; chaperonin Cpn10 complement(4143600..4143893) Escherichia coli DH1 12707491 YP_006093742.1 CDS EcDH1_3851 NC_017625.1 4144169 4145425 D PFAM: amino acid permease-associated region; KEGG: sbc:SbBS512_E4670 amino acid-polyamine-organocation (APC) permease family protein; amino acid permease 4144169..4145425 Escherichia coli DH1 12707492 YP_006093743.1 CDS EcDH1_3852 NC_017625.1 4145441 4145917 R PFAM: FxsA cytoplasmic membrane protein; KEGG: sbc:SbBS512_E4669 suppressor of F exclusion of phage T7; FxsA cytoplasmic membrane protein complement(4145441..4145917) Escherichia coli DH1 12707493 YP_006093744.1 CDS EcDH1_3853 NC_017625.1 4146254 4147690 D TIGRFAM: aspartate ammonia-lyase; PFAM: fumarate lyase; KEGG: sdy:SDY_4444 aspartate ammonia-lyase; aspartate ammonia-lyase 4146254..4147690 Escherichia coli DH1 12707494 YP_006093745.1 CDS EcDH1_3854 NC_017625.1 4147808 4149109 D TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; C4-dicarboxylate anaerobic carrier; KEGG: sbc:SbBS512_E4667 anaerobic C4-dicarboxylate transporter DcuA; anaerobic c4-dicarboxylate antiporter 4147808..4149109 Escherichia coli DH1 12707495 YP_006093746.1 CDS EcDH1_3855 NC_017625.1 4149225 4149563 D PFAM: CutA1 divalent ion tolerance protein; KEGG: sdy:SDY_4442 divalent-cation tolerance protein CutA; CutA1 divalent ion tolerance protein 4149225..4149563 Escherichia coli DH1 12707496 YP_006093747.1 CDS EcDH1_3856 NC_017625.1 4149539 4151236 D PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain; KEGG: sdy:SDY_4441 thiol:disulfide interchange protein precursor; Protein-disulfide reductase 4149539..4151236 Escherichia coli DH1 12707497 YP_006093748.1 CDS EcDH1_3857 NC_017625.1 4151273 4151848 D PFAM: regulatory protein TetR; KEGG: ssn:SSON_4318 putative transcriptional regulator; TetR family transcriptional regulator 4151273..4151848 Escherichia coli DH1 12707498 YP_006093749.1 CDS EcDH1_3858 NC_017625.1 4152647 4154185 D PFAM: transcriptional regulator domain protein; KEGG: kpn:KPN_00498 transcriptional activator of cad operon; transcriptional regulator CadC 4152647..4154185 Escherichia coli DH1 12707500 YP_006093750.1 CDS EcDH1_3860 NC_017625.1 4155964 4158111 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: kpn:KPN_00500 lysine decarboxylase 1; lysine decarboxylase 4155964..4158111 Escherichia coli DH1 12707502 YP_006093751.1 CDS EcDH1_3861 NC_017625.1 4158170 4159627 D KEGG: ssn:SSON_4307 putative peptide transporter; TIGRFAM: amino acid/peptide transporter; PFAM: TGF-beta receptor type I/II extracellular region; major facilitator superfamily MFS_1; amino acid/peptide transporter 4158170..4159627 Escherichia coli DH1 12707503 YP_006093752.1 CDS EcDH1_3862 NC_017625.1 4159864 4161381 D TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: ssn:SSON_4306 lysyl-tRNA synthetase; lysyl-tRNA synthetase 4159864..4161381 Escherichia coli DH1 12707504 YP_006093753.1 CDS EcDH1_3863 NC_017625.1 4161500 4161673 R KEGG: sew:SeSA_A1714 putative inner membrane protein; putative inner membrane protein complement(4161500..4161673) Escherichia coli DH1 12707505 YP_006093754.1 CDS EcDH1_3864 NC_017625.1 4161701 4161997 R KEGG: ssn:SSON_4305 hypothetical protein; hypothetical protein complement(4161701..4161997) Escherichia coli DH1 12707506 YP_006093755.1 CDS EcDH1_3865 NC_017625.1 4162224 4162496 R KEGG: sdy:SDY_4240 hypothetical protein; hypothetical protein complement(4162224..4162496) Escherichia coli DH1 12707507 YP_006093756.1 CDS EcDH1_3866 NC_017625.1 4162508 4162738 R PFAM: protein of unknown function DUF1271; KEGG: ssn:SSON_4303 hypothetical protein; hypothetical protein complement(4162508..4162738) Escherichia coli DH1 12707508 YP_006093757.1 CDS EcDH1_3867 NC_017625.1 4162919 4164550 D KEGG: sdy:SDY_4238 sensory histidine kinase DcuS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase regulating citrate/malate metabolism 4162919..4164550 Escherichia coli DH1 12707509 YP_006093758.1 CDS EcDH1_3868 NC_017625.1 4164547 4165266 D PFAM: response regulator receiver; KEGG: sdy:SDY_4237 DNA-binding response regulator in two-component regulatory system with DcuS; fused response regulator receiver/hypothetical protein 4164547..4165266 Escherichia coli DH1 12707510 YP_006093759.1 CDS EcDH1_3869 NC_017625.1 4165837 4167177 D TIGRFAM: anaerobic c4-dicarboxylate antiporter, Dcu family; PFAM: anaerobic c4-dicarboxylate membrane transporter; KEGG: sbo:SBO_4327 anaerobic C4-dicarboxylate transporter; anaerobic c4-dicarboxylate antiporter 4165837..4167177 Escherichia coli DH1 12707511 YP_006093760.1 CDS EcDH1_3870 NC_017625.1 4167255 4168901 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: sdy:SDY_4231 fumarase B; Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit beta 4167255..4168901 Escherichia coli DH1 12707512 YP_006093761.1 CDS EcDH1_3871 NC_017625.1 4169023 4169652 D KEGG: sbo:SBO_4325 hypothetical protein; hypothetical protein 4169023..4169652 Escherichia coli DH1 12707513 YP_006093762.1 CDS EcDH1_3872 NC_017625.1 4169791 4171200 R TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_4110 melibiose:sodium symporter; sugar (Glycoside-Pentoside-Hexuronide) transporter complement(4169791..4171200) Escherichia coli DH1 12707514 YP_006093763.1 CDS EcDH1_3873 NC_017625.1 4171315 4172670 R PFAM: glycoside hydrolase family 4; KEGG: sdy:SDY_4092 alpha-galactosidase; glycoside hydrolase family protein complement(4171315..4172670) Escherichia coli DH1 12707515 YP_006093764.1 CDS EcDH1_3874 NC_017625.1 4172953 4173861 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E4615 melibiose operon regulatory protein; AraC family transcriptional regulator 4172953..4173861 Escherichia coli DH1 12707516 YP_006093765.1 CDS EcDH1_3875 NC_017625.1 4174057 4176327 D PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: sdy:SDY_4094 biodegradative arginine decarboxylase; Arginine decarboxylase 4174057..4176327 Escherichia coli DH1 12707517 YP_006093766.1 CDS EcDH1_3876 NC_017625.1 4176652 4177413 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_4097 putative AraC-type regulatory protein; AraC family transcriptional regulator 4176652..4177413 Escherichia coli DH1 12707518 YP_006093767.1 CDS EcDH1_3877 NC_017625.1 4177550 4178887 D PFAM: amino acid permease-associated region; KEGG: ssn:SSON_4290 arginine:agmatin antiporter; amino acid permease 4177550..4178887 Escherichia coli DH1 12707519 YP_006093768.1 CDS EcDH1_3878 NC_017625.1 4178961 4180634 D PFAM: sulfatase; protein of unknown function DUF1705; KEGG: sfx:S3621 putative cell division protein; sulfatase 4178961..4180634 Escherichia coli DH1 12707520 YP_006093769.1 CDS EcDH1_3879 NC_017625.1 4180631 4181299 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sbo:SBO_4140 DNA-binding response regulator in two-component regulatory system with BasS; winged helix family two component transcriptional regulator 4180631..4181299 Escherichia coli DH1 12707521 YP_006093770.1 CDS EcDH1_3880 NC_017625.1 4181300 4182400 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbo:SBO_4139 sensor protein BasS/PmrB; histidine kinase 4181300..4182400 Escherichia coli DH1 12707522 YP_006093771.1 CDS EcDH1_3881 NC_017625.1 4182577 4184079 R TIGRFAM: metabolite/H+ symporter, major facilitator superfamily (MFS); PFAM: General substrate transporter; major facilitator superfamily MFS_1; Osmosensory transporter coiled coil; KEGG: sdy:SDY_4102 proline/glycine betaine transporter; metabolite/H+ symporter, major facilitator superfamily (MFS) complement(4182577..4184079) Escherichia coli DH1 12707523 YP_006093772.1 CDS EcDH1_3882 NC_017625.1 4184343 4185221 R KEGG: sfv:SFV_4120 hypothetical protein; hypothetical protein complement(4184343..4185221) Escherichia coli DH1 12707524 YP_006093773.1 CDS EcDH1_3883 NC_017625.1 4185218 4187446 R KEGG: sfv:SFV_4121 hypothetical protein; hypothetical protein complement(4185218..4187446) Escherichia coli DH1 12707525 YP_006093774.1 CDS EcDH1_3884 NC_017625.1 4187847 4188182 D TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: sdy:SDY_4109 hypothetical protein; alkylphosphonate utilization operon protein PhnA 4187847..4188182 Escherichia coli DH1 12707526 YP_006093775.1 CDS EcDH1_3885 NC_017625.1 4188840 4189283 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: sbc:SbBS512_E4608 putative PhnB protein; Glyoxalase/bleomycin resistance protein/dioxygenase 4188840..4189283 Escherichia coli DH1 12707527 YP_006093776.1 CDS EcDH1_3886 NC_017625.1 4189416 4190204 D KEGG: sbo:SBO_4131 phosphonate/organophosphate ester transporter subunit; TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate ABC transporter ATP-binding protein 4189416..4190204 Escherichia coli DH1 12707528 YP_006093777.1 CDS EcDH1_3887 NC_017625.1 4190229 4191245 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter, periplasmic phosphonate binding protein; KEGG: sbo:SBO_4130 periplasmic binding protein component of Pn transporter; phosphonate ABC transporter substrate-binding protein 4190229..4191245 Escherichia coli DH1 12707529 YP_006093778.1 CDS EcDH1_3889 NC_017625.1 4192159 4192884 D TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sbo:SBO_4128 putative transcriptional regulator; phophonate C-P lyase system transcriptional regulator PhnF, GntR family 4192159..4192884 Escherichia coli DH1 12707531 YP_006093779.1 CDS EcDH1_3890 NC_017625.1 4192885 4193337 D TIGRFAM: phosphonate C-P lyase system protein PhnG; PFAM: phosphonate metabolism PhnG; KEGG: ssn:SSON_4277 phosphonate metabolism; phosphonate C-P lyase system protein PhnG 4192885..4193337 Escherichia coli DH1 12707532 YP_006093780.1 CDS EcDH1_3891 NC_017625.1 4193334 4193918 D TIGRFAM: phosphonate C-P lyase system protein PhnH; PFAM: phosphonate metabolism; KEGG: sdy:SDY_4116 carbon-phosphorus lyase complex subunit; phosphonate C-P lyase system protein PhnH 4193334..4193918 Escherichia coli DH1 12707533 YP_006093781.1 CDS EcDH1_3892 NC_017625.1 4193918 4194982 D PFAM: phosphonate metabolism; KEGG: ssn:SSON_4275 phosphonate metabolism; phosphonate metabolism protein 4193918..4194982 Escherichia coli DH1 12707534 YP_006093782.1 CDS EcDH1_3893 NC_017625.1 4194975 4195820 D PFAM: phosphonate metabolism PhnJ; KEGG: sbo:SBO_4124 PhnJ; phosphonate metabolism PhnJ 4194975..4195820 Escherichia coli DH1 12707535 YP_006093783.1 CDS EcDH1_3894 NC_017625.1 4195817 4196575 D KEGG: ssn:SSON_4273 phosphonates transport ATP-binding protein; TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 4195817..4196575 Escherichia coli DH1 12707536 YP_006093784.1 CDS EcDH1_3895 NC_017625.1 4196686 4197366 D KEGG: sdy:SDY_4120 ATP-binding component of phosphonate transport; TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 4196686..4197366 Escherichia coli DH1 12707537 YP_006093785.1 CDS EcDH1_3896 NC_017625.1 4197363 4198499 D TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ssn:SSON_4271 phosphonate metabolism; phosphonate metabolism protein PhnM 4197363..4198499 Escherichia coli DH1 12707538 YP_006093786.1 CDS EcDH1_3897 NC_017625.1 4198499 4199056 D TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; KEGG: ssn:SSON_4270 ribose 1,5-bisphosphokinase; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 4198499..4199056 Escherichia coli DH1 12707539 YP_006093787.1 CDS EcDH1_3898 NC_017625.1 4199043 4199477 D PFAM: GCN5-related N-acetyltransferase; KEGG: ssn:SSON_4269 aminoalkylphosphonic acid N-acetyltransferase; N-acetyltransferase GCN5 4199043..4199477 Escherichia coli DH1 12707540 YP_006093788.1 CDS EcDH1_3899 NC_017625.1 4199479 4200237 D TIGRFAM: phosphonate metabolism protein PhnP; KEGG: ssn:SSON_4268 carbon-phosphorus lyase complex accessory protein; phosphonate metabolism protein PhnP 4199479..4200237 Escherichia coli DH1 12707541 YP_006093789.1 CDS EcDH1_3900 NC_017625.1 4200384 4200713 R KEGG: sbo:SBO_4117 hypothetical protein; hypothetical protein complement(4200384..4200713) Escherichia coli DH1 12707542 YP_006093790.1 CDS EcDH1_3901 NC_017625.1 4200782 4201231 R KEGG: cko:CKO_03782 ribose-5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; ribose 5-phosphate isomerase B complement(4200782..4201231) Escherichia coli DH1 12707543 YP_006093791.1 CDS EcDH1_3902 NC_017625.1 4201590 4202480 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cko:CKO_03784 DNA-binding transcriptional repressor RpiR; RpiR family transcriptional regulator 4201590..4202480 Escherichia coli DH1 12707544 YP_006093792.1 CDS EcDH1_3903 NC_017625.1 4202539 4203474 D PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_03785 D-allose transporter subunit; monosaccharide-transporting ATPase 4202539..4203474 Escherichia coli DH1 12707545 YP_006093793.1 CDS EcDH1_3904 NC_017625.1 4203601 4205133 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cko:CKO_03786 D-allose transporter ATP-binding protein; ABC transporter 4203601..4205133 Escherichia coli DH1 12707546 YP_006093794.1 CDS EcDH1_3905 NC_017625.1 4205112 4206092 D PFAM: inner-membrane translocator; KEGG: cko:CKO_03787 D-allose transporter subunit; monosaccharide-transporting ATPase 4205112..4206092 Escherichia coli DH1 12707547 YP_006093795.1 CDS EcDH1_3906 NC_017625.1 4206103 4206798 D PFAM: ribulose-phosphate 3-epimerase; KEGG: cko:CKO_03788 allulose-6-phosphate 3-epimerase; Ribulose-phosphate 3-epimerase 4206103..4206798 Escherichia coli DH1 12707548 YP_006093796.1 CDS EcDH1_3907 NC_017625.1 4206782 4207711 D PFAM: ROK family protein; KEGG: cko:CKO_03789 D-allose kinase; ROK family protein 4206782..4207711 Escherichia coli DH1 12707549 YP_006093797.1 CDS EcDH1_3908 NC_017625.1 4207984 4209969 D PFAM: beta-lactamase domain protein; KEGG: ssn:SSON_4265 hypothetical protein; beta-lactamase 4207984..4209969 Escherichia coli DH1 12707550 YP_006093798.1 CDS EcDH1_3909 NC_017625.1 4210178 4210453 D KEGG: sbo:SBO_4114 formate dehydrogenase H; formate dehydrogenase H 4210178..4210453 Escherichia coli DH1 12707551 YP_006093799.1 CDS EcDH1_3910 NC_017625.1 4210472 4211503 D TIGRFAM: efflux pump membrane protein; PFAM: secretion protein HlyD family protein; KEGG: ssn:SSON_4263 predicted membrane fusion protein of efflux pump; efflux pump membrane protein 4210472..4211503 Escherichia coli DH1 12707552 YP_006093800.1 CDS EcDH1_3911 NC_017625.1 4211503 4213554 D PFAM: Fusaric acid resistance protein conserved region; KEGG: sbo:SBO_4112 multidrug efflux system protein MdtO; fusaric acid resistance protein 4211503..4213554 Escherichia coli DH1 12707553 YP_006093801.1 CDS EcDH1_3912 NC_017625.1 4213551 4215017 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: ssn:SSON_4261 predicted outer membrane factor of efflux pump; NodT family RND efflux system outer membrane lipoprotein 4213551..4215017 Escherichia coli DH1 12707554 YP_006093802.1 CDS EcDH1_3913 NC_017625.1 4215215 4217362 D Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: set:SEN4056 formate dehydrogenase H; formate dehydrogenase subunit alpha 4215215..4217362 Escherichia coli DH1 12707555 YP_006093803.1 CDS EcDH1_3914 NC_017625.1 4217456 4218145 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: ssn:SSON_4259 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 4217456..4218145 Escherichia coli DH1 12707556 YP_006093804.1 CDS EcDH1_3915 NC_017625.1 4218676 4219989 R PFAM: sodium:dicarboxylate symporter; KEGG: sbc:SbBS512_E4598 proton glutamate symport protein; sodium:dicarboxylate symporter complement(4218676..4219989) Escherichia coli DH1 12707557 YP_006093805.1 CDS EcDH1_3916 NC_017625.1 4220331 4220927 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: sfv:SFV_4135 formate-dependent nitrite reductase complex subunit NrfG; hypothetical protein complement(4220331..4220927) Escherichia coli DH1 12707558 YP_006093806.1 CDS EcDH1_3917 NC_017625.1 4220924 4221307 R TIGRFAM: cytochrome c nitrite reductase, accessory protein NrfF; PFAM: cytochrome C biogenesis protein; KEGG: sbc:SbBS512_E4596 formate-dependent nitrite reductase complex, NrfF subunit; cytochrome c nitrite reductase, accessory protein NrfF complement(4220924..4221307) Escherichia coli DH1 12707559 YP_006093807.1 CDS EcDH1_3918 NC_017625.1 4221300 4222958 R TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: ssn:SSON_4255 heme lyase subunit NrfE; cytochrome c-type biogenesis protein CcmF complement(4221300..4222958) Escherichia coli DH1 12707560 YP_006093808.1 CDS EcDH1_3919 NC_017625.1 4223038 4223994 R TIGRFAM: cytochrome c nitrite reductase, NrfD subunit; PFAM: Polysulphide reductase NrfD; KEGG: ssn:SSON_4254 formate-dependent nitrate reductase complex transmembrane protein; cytochrome c nitrite reductase, NrfD subunit complement(4223038..4223994) Escherichia coli DH1 12707561 YP_006093809.1 CDS EcDH1_3920 NC_017625.1 4223991 4224662 R TIGRFAM: cytochrome c nitrite reductase, Fe-S protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_4103 formate-dependent nitrite reductase complex Fe-S centers; cytochrome c nitrite reductase, Fe-S protein complement(4223991..4224662) Escherichia coli DH1 12707562 YP_006093810.1 CDS EcDH1_3921 NC_017625.1 4224659 4225225 R TIGRFAM: cytochrome c nitrite reductase, pentaheme subunit; KEGG: ssn:SSON_4252 cytochrome c-type protein NrfB; cytochrome c nitrite reductase, pentaheme subunit complement(4224659..4225225) Escherichia coli DH1 12707563 YP_006093811.1 CDS EcDH1_3922 NC_017625.1 4225270 4226706 R KEGG: sbc:SbBS512_E4591 formate-dependent cytochrome c nitrite reductase, c552 subunit; TIGRFAM: formate-dependent cytochrome c nitrite reductase, c552 subunit; PFAM: cytochrome c552; formate-dependent cytochrome c nitrite reductase, c552 subunit complement(4225270..4226706) Escherichia coli DH1 12707564 YP_006093812.1 CDS EcDH1_3923 NC_017625.1 4227099 4229057 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ssn:SSON_4250 acetyl-CoA synthetase; acetate/CoA ligase 4227099..4229057 Escherichia coli DH1 12707565 YP_006093813.1 CDS EcDH1_3924 NC_017625.1 4229257 4229571 D PFAM: protein of unknown function DUF485; KEGG: sbc:SbBS512_E4587 hypothetical protein; hypothetical protein 4229257..4229571 Escherichia coli DH1 12707566 YP_006093814.1 CDS EcDH1_3925 NC_017625.1 4229568 4231217 D TIGRFAM: SSS sodium solute transporter superfamily; cation/acetate symporter ActP; PFAM: Na+/solute symporter; KEGG: ssn:SSON_4249 acetate permease; cation/acetate symporter ActP 4229568..4231217 Escherichia coli DH1 12707567 YP_006093815.1 CDS EcDH1_3926 NC_017625.1 4231395 4232687 D PFAM: pentapeptide repeat protein; KEGG: sfx:S3593 hypothetical protein; pentapeptide repeat-containing protein 4231395..4232687 Escherichia coli DH1 12707568 YP_006093816.1 CDS EcDH1_3927 NC_017625.1 4232841 4234490 R TIGRFAM: Na+/H+ antiporter; PFAM: sodium/hydrogen exchanger; KEGG: sdy:SDY_4502 hypothetical protein; Na+/H+ antiporter complement(4232841..4234490) Escherichia coli DH1 12707569 YP_006093817.1 CDS EcDH1_3928 NC_017625.1 4234642 4235991 R PFAM: Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: sdy:SDY_4503 hypothetical protein; xanthine/uracil/vitamin C permease complement(4234642..4235991) Escherichia coli DH1 12707570 YP_006093818.1 CDS EcDH1_3929 NC_017625.1 4236537 4237001 R TIGRFAM: redox-sensitive transcriptional activator SoxR; PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sdy:SDY_4504 redox-sensing activator of SoxS; MerR family transcriptional regulator complement(4236537..4237001) Escherichia coli DH1 12707571 YP_006093819.1 CDS EcDH1_3930 NC_017625.1 4237087 4237410 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sbc:SbBS512_E4580 regulatory protein SoxS; AraC family transcriptional regulator 4237087..4237410 Escherichia coli DH1 12707572 YP_006093820.1 CDS EcDH1_3931 NC_017625.1 4237413 4238999 R PFAM: EAL domain protein; KEGG: sfv:SFV_4151 hypothetical protein; EAL domain-containing protein complement(4237413..4238999) Escherichia coli DH1 12707573 YP_006093821.1 CDS EcDH1_3932 NC_017625.1 4239429 4239710 D KEGG: sbc:SbBS512_E4574 hypothetical protein; hypothetical protein 4239429..4239710 Escherichia coli DH1 12707574 YP_006093822.1 CDS EcDH1_3933 NC_017625.1 4239809 4240345 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sbo:SBO_4088 single-strand DNA-binding protein; single-strand binding protein complement(4239809..4240345) Escherichia coli DH1 12707575 YP_006093823.1 CDS EcDH1_3934 NC_017625.1 4240599 4243421 D TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: sbc:SbBS512_E4572 excinuclease ABC, A subunit; excinuclease ABC subunit A 4240599..4243421 Escherichia coli DH1 12707576 YP_006093824.1 CDS EcDH1_3935 NC_017625.1 4243456 4243812 R PFAM: protein of unknown function DUF419; KEGG: sdy:SDY_4510 hypothetical protein; hypothetical protein complement(4243456..4243812) Escherichia coli DH1 12707577 YP_006093825.1 CDS EcDH1_3936 NC_017625.1 4243816 4244232 R PFAM: protein of unknown function UPF0047; KEGG: sdy:SDY_4511 hypothetical protein; hypothetical protein complement(4243816..4244232) Escherichia coli DH1 12707578 YP_006093826.1 CDS EcDH1_3937 NC_017625.1 4244343 4245056 R KEGG: sbo:SBO_4084 acid phosphatase/phosphotransferase; TIGRFAM: HAD superfamily (subfamily IIIB) phosphatase, TIGR01672; PFAM: acid phosphatase (Class B); HAD superfamily phosphatase complement(4244343..4245056) Escherichia coli DH1 12707579 YP_006093827.1 CDS EcDH1_3938 NC_017625.1 4245458 4245661 D KEGG: sfl:SF4150 hypothetical protein; hypothetical protein 4245458..4245661 Escherichia coli DH1 12707580 YP_006093828.1 CDS EcDH1_3939 NC_017625.1 4246163 4247356 R PFAM: aminotransferase class I and II; KEGG: ssn:SSON_4234 aromatic amino acid aminotransferase; aromatic-amino-acid transaminase complement(4246163..4247356) Escherichia coli DH1 12707581 YP_006093829.1 CDS EcDH1_3940 NC_017625.1 4247609 4248688 R KEGG: sfv:SFV_4160 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(4247609..4248688) Escherichia coli DH1 12707582 YP_006093830.1 CDS EcDH1_3941 NC_017625.1 4248741 4250156 R KEGG: sbc:SbBS512_E4543 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; replicative DNA helicase complement(4248741..4250156) Escherichia coli DH1 12707583 YP_006093831.1 CDS EcDH1_3942 NC_017625.1 4250239 4251222 D PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sdy:SDY_4523 quinone oxidoreductase, NADPH-dependent; alcohol dehydrogenase 4250239..4251222 Escherichia coli DH1 12707584 YP_006093832.1 CDS EcDH1_3943 NC_017625.1 4251388 4251630 R TIGRFAM: phage shock protein G; PFAM: shock protein G; KEGG: sdy:SDY_4524 phage shock protein G; phage shock protein G complement(4251388..4251630) Escherichia coli DH1 12707585 YP_006093833.1 CDS EcDH1_3944 NC_017625.1 4251764 4252801 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase DuS; KEGG: ssn:SSON_4229 tRNA-dihydrouridine synthase A; yjbN family TIM-barrel protein complement(4251764..4252801) Escherichia coli DH1 12707586 YP_006093834.1 CDS EcDH1_3945 NC_017625.1 4253164 4253871 R KEGG: ssn:SSON_4228 hypothetical protein; hypothetical protein complement(4253164..4253871) Escherichia coli DH1 12707587 YP_006093835.1 CDS EcDH1_3946 NC_017625.1 4253895 4254149 R KEGG: sbo:SBO_4070 hypothetical protein; hypothetical protein complement(4253895..4254149) Escherichia coli DH1 12707588 YP_006093836.1 CDS EcDH1_3947 NC_017625.1 4254467 4254982 D PFAM: ferric-uptake regulator; KEGG: ssn:SSON_4226 zinc uptake transcriptional repressor; ferric uptake regulator family protein 4254467..4254982 Escherichia coli DH1 12707589 YP_006093837.1 CDS EcDH1_3948 NC_017625.1 4255024 4255233 R PFAM: CsbD family protein; KEGG: sdy:SDY_4529 putative stress-response protein; CsbD family protein complement(4255024..4255233) Escherichia coli DH1 12707590 YP_006093838.1 CDS EcDH1_3949 NC_017625.1 4255349 4256674 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sbc:SbBS512_E4553 DNA-damage-inducible protein F; MATE efflux family protein complement(4255349..4256674) Escherichia coli DH1 12707591 YP_006093839.1 CDS EcDH1_3950 NC_017625.1 4256747 4257355 R KEGG: sdy:SDY_4531 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA complement(4256747..4257355) Escherichia coli DH1 12707592 YP_006093840.1 CDS EcDH1_3951 NC_017625.1 4257465 4257833 R PFAM: diacylglycerol kinase; KEGG: sdy:SDY_4532 diacylglycerol kinase; diacylglycerol kinase complement(4257465..4257833) Escherichia coli DH1 12707593 YP_006093841.1 CDS EcDH1_3952 NC_017625.1 4258004 4260427 D PFAM: phospholipid/glycerol acyltransferase; KEGG: sdy:SDY_4533 glycerol-3-phosphate acyltransferase; glycerol-3-phosphate O-acyltransferase 4258004..4260427 Escherichia coli DH1 12707594 YP_006093842.1 CDS EcDH1_3953 NC_017625.1 4260582 4261454 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: sdy:SDY_4534 4-hydroxybenzoate octaprenyltransferase; 4-hydroxybenzoate polyprenyltransferase complement(4260582..4261454) Escherichia coli DH1 12707595 YP_006093843.1 CDS EcDH1_3954 NC_017625.1 4261467 4261964 R PFAM: Chorismate lyase; KEGG: sbc:SbBS512_E4558 chorismate lyase; chorismate lyase complement(4261467..4261964) Escherichia coli DH1 12707596 YP_006093844.1 CDS EcDH1_3955 NC_017625.1 4262187 4263515 R KEGG: sbo:SBO_4080 hypothetical protein; hypothetical protein complement(4262187..4263515) Escherichia coli DH1 12707597 YP_006093845.1 CDS EcDH1_3956 NC_017625.1 4263573 4263767 R hypothetical protein complement(4263573..4263767) Escherichia coli DH1 12707598 YP_006093846.1 CDS EcDH1_3957 NC_017625.1 4263869 4264021 D hypothetical protein 4263869..4264021 Escherichia coli DH1 12707599 YP_006093847.1 CDS EcDH1_3958 NC_017625.1 4263996 4264916 R PFAM: Maltose operon periplasmic; KEGG: ssn:SSON_4215 maltose regulon periplasmic protein; maltose operon periplasmic protein complement(4263996..4264916) Escherichia coli DH1 12707600 YP_006093848.1 CDS EcDH1_3959 NC_017625.1 4265159 4266499 R PFAM: porin LamB type; KEGG: ssn:SSON_4214 maltoporin; LamB type porin complement(4265159..4266499) Escherichia coli DH1 12707601 YP_006093849.1 CDS EcDH1_3960 NC_017625.1 4266571 4267686 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ssn:SSON_4213 maltose/maltodextrin transporter ATP-binding protein; ABC transporter complement(4266571..4267686) Escherichia coli DH1 12707602 YP_006093850.1 CDS EcDH1_3961 NC_017625.1 4267863 4267958 D hypothetical protein 4267863..4267958 Escherichia coli DH1 12707603 YP_006093851.1 CDS EcDH1_3962 NC_017625.1 4268051 4269241 D PFAM: extracellular solute-binding protein family 1; KEGG: sfv:SFV_4180 maltose ABC transporter periplasmic protein; extracellular solute-binding protein 4268051..4269241 Escherichia coli DH1 12707604 YP_006093852.1 CDS EcDH1_3963 NC_017625.1 4269395 4270939 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfv:SFV_4181 maltose transporter membrane protein; Fructose-bisphosphate aldolase 4269395..4270939 Escherichia coli DH1 12707605 YP_006093853.1 CDS EcDH1_3964 NC_017625.1 4270954 4271844 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S3558 maltose transporter permease; binding-protein-dependent transport system inner membrane protein 4270954..4271844 Escherichia coli DH1 12707606 YP_006093854.1 CDS EcDH1_3965 NC_017625.1 4272216 4273691 D KEGG: ssn:SSON_4209 D-xylose transporter XylE; TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 4272216..4273691 Escherichia coli DH1 12707607 YP_006093855.1 CDS EcDH1_3966 NC_017625.1 4273735 4274145 R PFAM: phosphate-starvation-inducible E; KEGG: sdy:SDY_4218 phosphate-starvation-inducible protein PsiE; phosphate-starvation-inducible E complement(4273735..4274145) Escherichia coli DH1 12707608 YP_006093856.1 CDS EcDH1_3967 NC_017625.1 4274415 4274693 D KEGG: sbo:SBO_4058 hypothetical protein; hypothetical protein 4274415..4274693 Escherichia coli DH1 12707609 YP_006093857.1 CDS EcDH1_3968 NC_017625.1 4274740 4276836 R PFAM: protein of unknown function DUF940 membrane lipoprotein putative; KEGG: sfv:SFV_4185 hypothetical protein; hypothetical protein complement(4274740..4276836) Escherichia coli DH1 12707610 YP_006093858.1 CDS EcDH1_3969 NC_017625.1 4276836 4277573 R PFAM: protein of unknown function DUF1017; KEGG: sfx:S3554 hypothetical protein; hypothetical protein complement(4276836..4277573) Escherichia coli DH1 12707611 YP_006093859.1 CDS EcDH1_3970 NC_017625.1 4277570 4278208 R KEGG: ssn:SSON_4205 hypothetical protein; hypothetical protein complement(4277570..4278208) Escherichia coli DH1 12707612 YP_006093860.1 CDS EcDH1_3971 NC_017625.1 4278322 4278564 R KEGG: sdy:SDY_4222 hypothetical protein; hypothetical protein complement(4278322..4278564) Escherichia coli DH1 12707613 YP_006093861.1 CDS EcDH1_3972 NC_017625.1 4279063 4280712 R PFAM: phosphoglucose isomerase (PGI); KEGG: sdy:SDY_4226 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase complement(4279063..4280712) Escherichia coli DH1 12707614 YP_006093862.1 CDS EcDH1_3973 NC_017625.1 4281237 4282586 D KEGG: ssn:SSON_4202 aspartate kinase III; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 4281237..4282586 Escherichia coli DH1 12707615 YP_006093863.1 CDS EcDH1_3974 NC_017625.1 4282839 4283111 D KEGG: sdy:SDY_4309 hypothetical protein; hypothetical protein 4282839..4283111 Escherichia coli DH1 12707616 YP_006093864.1 CDS EcDH1_3975 NC_017625.1 4283244 4284116 R PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sbc:SbBS512_E4525 ribosomal large subunit pseudouridine synthase F; pseudouridine synthase complement(4283244..4284116) Escherichia coli DH1 12707617 YP_006093865.1 CDS EcDH1_3976 NC_017625.1 4284328 4285017 D PFAM: peptidase S51 dipeptidase E; KEGG: sbc:SbBS512_E4515 dipeptidase E; dipeptidase E 4284328..4285017 Escherichia coli DH1 12707618 YP_006093866.1 CDS EcDH1_3977 NC_017625.1 4285108 4286739 R TIGRFAM: sodium-dependent inorganic phosphate (Pi) transporter; Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: ssn:SSON_4191 putative alpha helix protein; sodium-dependent inorganic phosphate (Pi) transporter complement(4285108..4286739) Escherichia coli DH1 12707619 YP_006093867.1 CDS EcDH1_3978 NC_017625.1 4286959 4290642 R TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; Vitamin B12 dependent methionine synthase activation region; cobalamin B12-binding domain protein; KEGG: ssn:SSON_4190 B12-dependent methionine synthase; methionine synthase complement(4286959..4290642) Escherichia coli DH1 12707620 YP_006093868.1 CDS EcDH1_3979 NC_017625.1 4290842 4291666 D PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: sfx:S3646 transcriptional repressor IclR; IclR family transcriptional regulator 4290842..4291666 Escherichia coli DH1 12707621 YP_006093869.1 CDS EcDH1_3980 NC_017625.1 4291983 4294169 D PFAM: ShET2 enterotoxin domain protein; KEGG: sbc:SbBS512_E4510 ankyrin-repeat protein A; ShET2 enterotoxin domain protein 4291983..4294169 Escherichia coli DH1 12707622 YP_006093870.1 CDS EcDH1_3981 NC_017625.1 4294138 4295874 R PFAM: Isocitrate dehydrogenase kinasephosphatase; KEGG: sbc:SbBS512_E4511 isocitrate dehydrogenase kinase/phosphatase; (isocitrate dehydrogenase) kinase complement(4294138..4295874) Escherichia coli DH1 12707623 YP_006093871.1 CDS EcDH1_3982 NC_017625.1 4296057 4297361 R TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sdy:SDY_4328 isocitrate lyase; isocitrate lyase complement(4296057..4297361) Escherichia coli DH1 12707624 YP_006093872.1 CDS EcDH1_3983 NC_017625.1 4297391 4298992 R KEGG: sbc:SbBS512_E4508 malate synthase A; TIGRFAM: malate synthase A; PFAM: malate synthase; malate synthase A complement(4297391..4298992) Escherichia coli DH1 12707625 YP_006093873.1 CDS EcDH1_3984 NC_017625.1 4299261 4300190 R PFAM: homoserine O-succinyltransferase; KEGG: sdy:SDY_4330 homoserine O-succinyltransferase; Homoserine O-succinyltransferase complement(4299261..4300190) Escherichia coli DH1 12707626 YP_006093874.1 CDS EcDH1_3985 NC_017625.1 4300347 4300790 D PFAM: GCN5-related N-acetyltransferase; KEGG: sdy:SDY_4333 hypothetical protein; N-acetyltransferase GCN5 4300347..4300790 Escherichia coli DH1 12707627 YP_006093875.1 CDS EcDH1_3986 NC_017625.1 4300853 4301236 R KEGG: sdy:SDY_4334 hypothetical protein; hypothetical protein complement(4300853..4301236) Escherichia coli DH1 12707628 YP_006093876.1 CDS EcDH1_3987 NC_017625.1 4306938 4308527 D KEGG: sbc:SbBS512_E4498 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 4306938..4308527 Escherichia coli DH1 12707633 YP_006093877.1 CDS EcDH1_3988 NC_017625.1 4308539 4309828 D KEGG: sbc:SbBS512_E4496 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; phosphoribosylamine--glycine ligase 4308539..4309828 Escherichia coli DH1 12707634 YP_006093878.1 CDS EcDH1_3989 NC_017625.1 4309825 4311150 R PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbc:SbBS512_E4497 response regulator ZraR; two component Fis family sigma54-specific transcriptional regulator complement(4309825..4311150) Escherichia coli DH1 12707635 YP_006093879.1 CDS EcDH1_3990 NC_017625.1 4311147 4312544 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sdy:SDY_3723 sensor protein ZraS; histidine kinase complement(4311147..4312544) Escherichia coli DH1 12707636 YP_006093880.1 CDS EcDH1_3991 NC_017625.1 4312651 4312779 D hypothetical protein 4312651..4312779 Escherichia coli DH1 12707637 YP_006093881.1 CDS EcDH1_3992 NC_017625.1 4312782 4313207 D KEGG: sbc:SbBS512_E4493 zinc resistance-associated protein; zinc resistance-associated protein 4312782..4313207 Escherichia coli DH1 12707638 YP_006093882.1 CDS EcDH1_3993 NC_017625.1 4313209 4313844 R PFAM: protein of unknown function DUF1481; KEGG: sbc:SbBS512_E4492 hypothetical protein; hypothetical protein complement(4313209..4313844) Escherichia coli DH1 12707639 YP_006093883.1 CDS EcDH1_3994 NC_017625.1 4313917 4314189 R PFAM: histone family protein DNA-binding protein; KEGG: sdy:SDY_3726 transcriptional regulator HU subunit alpha; histone family protein DNA-binding protein complement(4313917..4314189) Escherichia coli DH1 12707640 YP_006093884.1 CDS EcDH1_3995 NC_017625.1 4314376 4314966 R PFAM: protein of unknown function DUF416; KEGG: ssn:SSON_4172 hypothetical protein; hypothetical protein complement(4314376..4314966) Escherichia coli DH1 12707641 YP_006093885.1 CDS EcDH1_3996 NC_017625.1 4315009 4315680 R PFAM: Endonuclease V; KEGG: sbc:SbBS512_E4489 endonuclease V; Deoxyribonuclease V complement(4315009..4315680) Escherichia coli DH1 12707642 YP_006093886.1 CDS EcDH1_3997 NC_017625.1 4315690 4316754 R KEGG: sbc:SbBS512_E4488 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase complement(4315690..4316754) Escherichia coli DH1 12707643 YP_006093887.1 CDS EcDH1_3998 NC_017625.1 4316794 4317567 R PFAM: NUDIX hydrolase; NADH pyrophosphatase-like ; Zinc ribbon NADH pyrophosphatase; KEGG: ssn:SSON_4169 NADH pyrophosphatase; NUDIX hydrolase complement(4316794..4317567) Escherichia coli DH1 12707644 YP_006093888.1 CDS EcDH1_3999 NC_017625.1 4317662 4318138 D PFAM: regulator of RNA polymerase sigma(70) subunit Rsd/AlgQ; KEGG: sbc:SbBS512_E4486 regulator of sigma D; regulator of RpoD, Rsd/AlgQ 4317662..4318138 Escherichia coli DH1 12707645 YP_006093889.1 CDS EcDH1_4000 NC_017625.1 4318371 4320266 D PFAM: thiamine biosynthesis protein ThiC; KEGG: sbo:SBO_4015 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 4318371..4320266 Escherichia coli DH1 12707646 YP_006093890.1 CDS EcDH1_4001 NC_017625.1 4320266 4320901 D KEGG: sbc:SbBS512_E4484 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 4320266..4320901 Escherichia coli DH1 12707647 YP_006093891.1 CDS EcDH1_4002 NC_017625.1 4320894 4321649 D TIGRFAM: thiazole biosynthesis adenylyltransferase ThiF; PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sdy:SDY_3734 thiamin biosynthesis, thiazole moiety; thiazole biosynthesis adenylyltransferase ThiF 4320894..4321649 Escherichia coli DH1 12707648 YP_006093892.1 CDS EcDH1_4003 NC_017625.1 4321633 4321833 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sbc:SbBS512_E4482 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 4321633..4321833 Escherichia coli DH1 12707649 YP_006093893.1 CDS EcDH1_4004 NC_017625.1 4321835 4322605 D PFAM: thiazole biosynthesis family protein; KEGG: sfv:SFV_4063 thiazole synthase; thiazole biosynthesis family protein 4321835..4322605 Escherichia coli DH1 12707650 YP_006093894.1 CDS EcDH1_4005 NC_017625.1 4322602 4323735 D TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: sdy:SDY_3737 thiamine biosynthesis protein ThiH; thiazole biosynthesis protein ThiH 4322602..4323735 Escherichia coli DH1 12707651 YP_006093895.1 CDS EcDH1_4006 NC_017625.1 4324145 4324684 R KEGG: sbo:SBO_4009 heat shock protein; heat shock protein complement(4324145..4324684) Escherichia coli DH1 12707652 YP_006093896.1 CDS EcDH1_4007 NC_017625.1 4324897 4329120 R KEGG: sbo:SBO_4008 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 1; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' complement(4324897..4329120) Escherichia coli DH1 12707653 YP_006093897.1 CDS EcDH1_4008 NC_017625.1 4329197 4333225 R TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase beta subunit; KEGG: sbc:SbBS512_E4475 DNA-directed RNA polymerase, beta subunit; DNA-directed RNA polymerase subunit beta complement(4329197..4333225) Escherichia coli DH1 12707654 YP_006093898.1 CDS EcDH1_4009 NC_017625.1 4333545 4333910 R TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: sdy:SDY_3742 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 complement(4333545..4333910) Escherichia coli DH1 12707655 YP_006093899.1 CDS EcDH1_4010 NC_017625.1 4333977 4334474 R PFAM: ribosomal protein L10; KEGG: sdy:SDY_3743 50S ribosomal protein L10; 50S ribosomal protein L10 complement(4333977..4334474) Escherichia coli DH1 12707656 YP_006093900.1 CDS EcDH1_4011 NC_017625.1 4334887 4335591 R PFAM: ribosomal protein L1; KEGG: sdy:SDY_3744 50S ribosomal protein L1; 50S ribosomal protein L1 complement(4334887..4335591) Escherichia coli DH1 12707657 YP_006093901.1 CDS EcDH1_4012 NC_017625.1 4335595 4336023 R PFAM: ribosomal protein L11; KEGG: sdy:SDY_3745 50S ribosomal protein L11; 50S ribosomal protein L11 complement(4335595..4336023) Escherichia coli DH1 12707658 YP_006093902.1 CDS EcDH1_4013 NC_017625.1 4336182 4336727 R TIGRFAM: transcription termination/antitermination factor NusG; PFAM: KOW domain protein; NGN domain protein; KEGG: sdy:SDY_3746 transcription antitermination protein NusG; NusG antitermination factor complement(4336182..4336727) Escherichia coli DH1 12707659 YP_006093903.1 CDS EcDH1_4014 NC_017625.1 4336729 4337112 R TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: sbc:SbBS512_E4469 preprotein translocase subunit SecE; Preprotein translocase subunit SecE complement(4336729..4337112) Escherichia coli DH1 12707660 YP_006093904.1 CDS EcDH1_4015 NC_017625.1 4337342 4338526 R TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; KEGG: sbc:SbBS512_E4468 translation elongation factor Tu; translation elongation factor Tu complement(4337342..4338526) Escherichia coli DH1 12707661 YP_006093905.1 CDS EcDH1_4016 NC_017625.1 4339468 4340394 D TIGRFAM: pantothenate kinase; KEGG: ssn:SSON_4147 pantothenate kinase; pantothenate kinase 4339468..4340394 Escherichia coli DH1 12707666 YP_006093906.1 CDS EcDH1_4017 NC_017625.1 4340423 4341388 R KEGG: sbc:SbBS512_E4461 bifunctional protein BirA; TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; biotin operon repressor; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; bifunctional biotin operon repressor/biotin--acetyl-CoA-carboxylase ligase BirA complement(4340423..4341388) Escherichia coli DH1 12707667 YP_006093907.1 CDS EcDH1_4018 NC_017625.1 4341385 4342413 R KEGG: sdy:SDY_3756 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(4341385..4342413) Escherichia coli DH1 12707668 YP_006093908.1 CDS EcDH1_4019 NC_017625.1 4348185 4349042 R KEGG: sdy:SDY_3761 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(4348185..4349042) Escherichia coli DH1 12707673 YP_006093909.1 CDS EcDH1_4020 NC_017625.1 4348987 4350831 R TIGRFAM: TonB-dependent vitamin B12 receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ssn:SSON_4139 vitamin B12/cobalamin outer membrane transporter; TonB-dependent vitamin B12 receptor complement(4348987..4350831) Escherichia coli DH1 12707674 YP_006093910.1 CDS EcDH1_4021 NC_017625.1 4351200 4352300 D KEGG: sbc:SbBS512_E4451 tRNA (uracil-5-)-methyltransferase; TIGRFAM: tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase; tRNA (uracil-5-)-methyltransferase 4351200..4352300 Escherichia coli DH1 12707675 YP_006093911.1 CDS EcDH1_4022 NC_017625.1 4352340 4352699 R PFAM: protein of unknown function DUF1422; KEGG: sbc:SbBS512_E4450 putative inner membrane protein; hypothetical protein complement(4352340..4352699) Escherichia coli DH1 12707676 YP_006093912.1 CDS EcDH1_4023 NC_017625.1 4352699 4353403 R PFAM: regulatory protein TetR; KEGG: sdy:SDY_3765 DNA-binding transcriptional repressor FabR; TetR family transcriptional regulator complement(4352699..4353403) Escherichia coli DH1 12707677 YP_006093913.1 CDS EcDH1_4024 NC_017625.1 4353680 4355080 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: sbc:SbBS512_E4447 soluble pyridine nucleotide transhydrogenase; pyridine nucleotide-disulfide oxidoreductase dimerization region 4353680..4355080 Escherichia coli DH1 12707678 YP_006093914.1 CDS EcDH1_4025 NC_017625.1 4355063 4355980 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3796 DNA-binding transcriptional regulator OxyR; LysR family transcriptional regulator complement(4355063..4355980) Escherichia coli DH1 12707679 YP_006093915.1 CDS EcDH1_4026 NC_017625.1 4356247 4357620 R TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: sbc:SbBS512_E4446 argininosuccinate lyase; argininosuccinate lyase complement(4356247..4357620) Escherichia coli DH1 12707680 YP_006093916.1 CDS EcDH1_4027 NC_017625.1 4357681 4358457 R TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: sbc:SbBS512_E4445 acetylglutamate kinase; acetylglutamate kinase complement(4357681..4358457) Escherichia coli DH1 12707681 YP_006093917.1 CDS EcDH1_4028 NC_017625.1 4358465 4359469 R KEGG: ssn:SSON_4131 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase complement(4358465..4359469) Escherichia coli DH1 12707682 YP_006093918.1 CDS EcDH1_4029 NC_017625.1 4359623 4360774 D KEGG: sbc:SbBS512_E4443 acetylornithine deacetylase; TIGRFAM: acetylornithine deacetylase (ArgE); PFAM: peptidase M20; peptidase dimerisation domain protein; acetylornithine deacetylase 4359623..4360774 Escherichia coli DH1 12707683 YP_006093919.1 CDS EcDH1_4030 NC_017625.1 4361372 4364023 D PFAM: phosphoenolpyruvate carboxylase; KEGG: sbc:SbBS512_E4442 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 4361372..4364023 Escherichia coli DH1 12707684 YP_006093920.1 CDS EcDH1_4031 NC_017625.1 4364205 4365938 D PFAM: sulfatase; KEGG: sbc:SbBS512_E4441 putative sulfatase; sulfatase 4364205..4365938 Escherichia coli DH1 12707685 YP_006093921.1 CDS EcDH1_4032 NC_017625.1 4366153 4367004 D PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sdy:SDY_3789 putative AraC-type regulatory protein; AraC family transcriptional regulator 4366153..4367004 Escherichia coli DH1 12707686 YP_006093922.1 CDS EcDH1_4033 NC_017625.1 4366991 4367332 R TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbc:SbBS512_E4440 PTS system, fructose family, IIB component; PTS system fructose-specific transporter subunit IIB complement(4366991..4367332) Escherichia coli DH1 12707687 YP_006093923.1 CDS EcDH1_4034 NC_017625.1 4367334 4368212 R KEGG: ssn:SSON_4125 pyruvate formate lyase II activase; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical enzyme activating protein family complement(4367334..4368212) Escherichia coli DH1 12707688 YP_006093924.1 CDS EcDH1_4035 NC_017625.1 4368178 4370475 R KEGG: sfv:SFV_4020 putative formate acetyltransferase 2; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase complement(4368178..4370475) Escherichia coli DH1 12707689 YP_006093925.1 CDS EcDH1_4036 NC_017625.1 4370526 4370846 R TIGRFAM: PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sdy:SDY_3785 PTS system fructose-like IIB component 1; PTS system fructose-specific transporter subunit IIB complement(4370526..4370846) Escherichia coli DH1 12707690 YP_006093926.1 CDS EcDH1_4037 NC_017625.1 4370861 4371940 R TIGRFAM: PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; KEGG: sfv:SFV_4018 putative fructose-like permease EIIC subunit 2; PTS system fructose subfamily transporter subunit IIC complement(4370861..4371940) Escherichia coli DH1 12707691 YP_006093927.1 CDS EcDH1_4038 NC_017625.1 4372249 4374750 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphoryl transfer system HPr; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: sbc:SbBS512_E4434 multi-phosphoryl transfer protein 2; phosphoenolpyruvate-protein phosphotransferase 4372249..4374750 Escherichia coli DH1 12707692 YP_006093928.1 CDS EcDH1_4039 NC_017625.1 4374762 4375424 D KEGG: ssn:SSON_4120 fructose-6-phosphate aldolase; TIGRFAM: transaldolase; PFAM: Transaldolase; transaldolase 4374762..4375424 Escherichia coli DH1 12707693 YP_006093929.1 CDS EcDH1_4040 NC_017625.1 4375435 4376538 D PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: sbc:SbBS512_E4432 glycerol dehydrogenase; iron-containing alcohol dehydrogenase 4375435..4376538 Escherichia coli DH1 12707694 YP_006093930.1 CDS EcDH1_4041 NC_017625.1 4376813 4377430 D PFAM: protein of unknown function DUF1287; KEGG: ssn:SSON_4118 hypothetical protein; hypothetical protein 4376813..4377430 Escherichia coli DH1 12707695 YP_006093931.1 CDS EcDH1_4042 NC_017625.1 4377457 4378362 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4117 hypothetical protein; hypothetical protein complement(4377457..4378362) Escherichia coli DH1 12707696 YP_006093932.1 CDS EcDH1_4043 NC_017625.1 4378455 4380635 R TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: sfv:SFV_4012 catalase; hydroperoxidase HPI(I); catalase/peroxidase HPI complement(4378455..4380635) Escherichia coli DH1 12707697 YP_006093933.1 CDS EcDH1_4044 NC_017625.1 4380964 4381854 R KEGG: sbc:SbBS512_E4428 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(4380964..4381854) Escherichia coli DH1 12707698 YP_006093934.1 CDS EcDH1_4045 NC_017625.1 4382203 4384635 R KEGG: sbo:SBO_3960 bifunctional aspartate kinase II/homoserine dehydrogenase II; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; aspartate kinase complement(4382203..4384635) Escherichia coli DH1 12707699 YP_006093935.1 CDS EcDH1_4046 NC_017625.1 4384638 4385798 R KEGG: sbo:SBO_3959 cystathionine gamma-synthase; TIGRFAM: O-succinylhomoserine (thiol)-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; O-succinylhomoserine (thiol)-lyase complement(4384638..4385798) Escherichia coli DH1 12707700 YP_006093936.1 CDS EcDH1_4047 NC_017625.1 4386075 4386392 D PFAM: Methionine repressor MetJ; KEGG: sdy:SDY_3773 transcriptional repressor protein MetJ; methionine repressor MetJ 4386075..4386392 Escherichia coli DH1 12707701 YP_006093937.1 CDS EcDH1_4048 NC_017625.1 4386576 4387184 D PFAM: protein of unknown function DUF1105; KEGG: sdy:SDY_3772 hypothetical protein; hypothetical protein 4386576..4387184 Escherichia coli DH1 12707702 YP_006093938.1 CDS EcDH1_4049 NC_017625.1 4387245 4387457 R PFAM: ribosomal protein L31; KEGG: sdy:SDY_3801 50S ribosomal protein L31; 50S ribosomal protein L31 complement(4387245..4387457) Escherichia coli DH1 12707703 YP_006093939.1 CDS EcDH1_4050 NC_017625.1 4387660 4389858 D KEGG: sbo:SBO_3952 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 4387660..4389858 Escherichia coli DH1 12707704 YP_006093940.1 CDS EcDH1_4051 NC_017625.1 4390014 4391039 D PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: sbc:SbBS512_E4416 transcriptional repressor CytR; LacI family transcriptional regulator 4390014..4391039 Escherichia coli DH1 12707705 YP_006093941.1 CDS EcDH1_4052 NC_017625.1 4391236 4392090 D TIGRFAM: cell division protein FtsN; PFAM: Sporulation domain protein; KEGG: sbc:SbBS512_E4415 cell division protein FtsN; cell division protein FtsN 4391236..4392090 Escherichia coli DH1 12707706 YP_006093942.1 CDS EcDH1_4053 NC_017625.1 4392183 4392713 D PFAM: 20S proteasome A and B subunits; KEGG: sdy:SDY_3805 ATP-dependent protease peptidase subunit; 20S proteasome A and B subunits 4392183..4392713 Escherichia coli DH1 12707707 YP_006093943.1 CDS EcDH1_4054 NC_017625.1 4392723 4394054 D KEGG: sbo:SBO_3948 ATP-dependent protease ATP-binding subunit; TIGRFAM: heat shock protein HslVU, ATPase subunit HslU; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; heat shock protein HslVU, ATPase subunit HslU 4392723..4394054 Escherichia coli DH1 12707708 YP_006093944.1 CDS EcDH1_4055 NC_017625.1 4394121 4395047 D TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: sbc:SbBS512_E4412 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 4394121..4395047 Escherichia coli DH1 12707709 YP_006093945.1 CDS EcDH1_4056 NC_017625.1 4395140 4395625 D TIGRFAM: regulator of ribonuclease activity A; PFAM: Dimethylmenaquinone methyltransferase; KEGG: sbc:SbBS512_E4411 regulator of ribonuclease activity A; ribonuclease activity A regulator 4395140..4395625 Escherichia coli DH1 12707710 YP_006093946.1 CDS EcDH1_4057 NC_017625.1 4395710 4395949 R PFAM: protein of unknown function DUF904; KEGG: sdy:SDY_3816 hypothetical protein; hypothetical protein complement(4395710..4395949) Escherichia coli DH1 12707711 YP_006093947.1 CDS EcDH1_4058 NC_017625.1 4396380 4397225 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: ssn:SSON_4096 facilitated diffusion of glycerol; MIP family channel protein 4396380..4397225 Escherichia coli DH1 12707712 YP_006093948.1 CDS EcDH1_4059 NC_017625.1 4397248 4398756 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: sbo:SBO_3943 glycerol kinase; glycerol kinase 4397248..4398756 Escherichia coli DH1 12707713 YP_006093949.1 CDS EcDH1_4060 NC_017625.1 4398762 4399901 D TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: sek:SSPA3655 putative glycerol metabolic protein; fructose-1,6-bisphosphatase 4398762..4399901 Escherichia coli DH1 12707714 YP_006093950.1 CDS EcDH1_4061 NC_017625.1 4399998 4400744 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sdy:SDY_3820 ferredoxin-NADP reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein 4399998..4400744 Escherichia coli DH1 12707715 YP_006093951.1 CDS EcDH1_4062 NC_017625.1 4400749 4401177 R PFAM: UspA domain protein; KEGG: sbc:SbBS512_E4405 universal stress protein D; UspA domain-containing protein complement(4400749..4401177) Escherichia coli DH1 12707716 YP_006093952.1 CDS EcDH1_4063 NC_017625.1 4401204 4401503 R PFAM: conserved hypothetical protein; KEGG: sbc:SbBS512_E4404 hypothetical protein; hypothetical protein complement(4401204..4401503) Escherichia coli DH1 12707717 YP_006093953.1 CDS EcDH1_4064 NC_017625.1 4401715 4402155 R PFAM: protein of unknown function DUF805; KEGG: ssn:SSON_4090 hypothetical protein; hypothetical protein complement(4401715..4402155) Escherichia coli DH1 12707718 YP_006093954.1 CDS EcDH1_4065 NC_017625.1 4402256 4402855 D PFAM: protein of unknown function DUF1454; KEGG: sbc:SbBS512_E4400 hypothetical protein; hypothetical protein 4402256..4402855 Escherichia coli DH1 12707719 YP_006093955.1 CDS EcDH1_4066 NC_017625.1 4402963 4403730 D PFAM: triosephosphate isomerase; KEGG: sdy:SDY_3826 triosephosphate isomerase; Triose-phosphate isomerase 4402963..4403730 Escherichia coli DH1 12707720 YP_006093956.1 CDS EcDH1_4067 NC_017625.1 4403785 4404540 R PFAM: CDP-diacylglycerol pyrophosphatase; KEGG: sbo:SBO_3935 CDP-diacylglycerol pyrophosphatase; CDP-diacylglycerol diphosphatase complement(4403785..4404540) Escherichia coli DH1 12707721 YP_006093957.1 CDS EcDH1_4068 NC_017625.1 4404647 4405636 R TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: ssn:SSON_4086 sulfate transporter subunit; sulfate ABC transporter substrate-binding protein complement(4404647..4405636) Escherichia coli DH1 12707722 YP_006093958.1 CDS EcDH1_4069 NC_017625.1 4405956 4406918 R KEGG: sdy:SDY_3831 6-phosphofructokinase; TIGRFAM: 6-phosphofructokinase; PFAM: phosphofructokinase; 6-phosphofructokinase complement(4405956..4406918) Escherichia coli DH1 12707723 YP_006093959.1 CDS EcDH1_4070 NC_017625.1 4407099 4408001 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sdy:SDY_3832 ferrous iron efflux protein F; cation diffusion facilitator family transporter complement(4407099..4408001) Escherichia coli DH1 12707724 YP_006093960.1 CDS EcDH1_4071 NC_017625.1 4408150 4408650 R PFAM: protein of unknown function Spy-related; KEGG: sdy:SDY_3833 periplasmic repressor CpxP; hypothetical protein complement(4408150..4408650) Escherichia coli DH1 12707725 YP_006093961.1 CDS EcDH1_4072 NC_017625.1 4408800 4409498 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sdy:SDY_3834 DNA-binding response regulator in two-component regulatory system with CpxA; winged helix family two component transcriptional regulator 4408800..4409498 Escherichia coli DH1 12707726 YP_006093962.1 CDS EcDH1_4073 NC_017625.1 4409495 4410868 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sbo:SBO_3929 two-component sensor protein; histidine kinase 4409495..4410868 Escherichia coli DH1 12707727 YP_006093963.1 CDS EcDH1_4074 NC_017625.1 4410974 4411648 R PFAM: 3-alpha domain protein; MOSC domain containing protein; KEGG: sbo:SBO_3928 hypothetical protein; MOSC domain-containing protein complement(4410974..4411648) Escherichia coli DH1 12707728 YP_006093964.1 CDS EcDH1_4075 NC_017625.1 4411797 4412780 R TIGRFAM: 2-keto-3-deoxygluconate transporter; PFAM: 2-keto-3-deoxygluconate permease; KEGG: ssn:SSON_4079 2-keto-3-deoxygluconate permease; 2-keto-3-deoxygluconate transporter complement(4411797..4412780) Escherichia coli DH1 12707729 YP_006093965.1 CDS EcDH1_4076 NC_017625.1 4413040 4413660 R PFAM: manganese and iron superoxide dismutase; KEGG: sbc:SbBS512_E4387 superoxide dismutase (Mn); Superoxide dismutase complement(4413040..4413660) Escherichia coli DH1 12707730 YP_006093966.1 CDS EcDH1_4077 NC_017625.1 4413945 4414979 D TIGRFAM: L-rhamnose-proton symporter, RhaT family, DMT superfamily; PFAM: RhaT l-rhamnose-proton symport 2; KEGG: sbc:SbBS512_E4385 L-rhamnose-proton symporter; L-rhamnose-proton symporter 4413945..4414979 Escherichia coli DH1 12707731 YP_006093967.1 CDS EcDH1_4078 NC_017625.1 4414976 4415914 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; Cupin 2 conserved barrel domain protein; KEGG: sfx:S3765 transcriptional activator RhaR; AraC family transcriptional regulator complement(4414976..4415914) Escherichia coli DH1 12707732 YP_006093968.1 CDS EcDH1_4079 NC_017625.1 4415898 4416734 R PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: sbo:SBO_3923 positive regulator for rhaBAD operon; AraC family transcriptional regulator complement(4415898..4416734) Escherichia coli DH1 12707733 YP_006093969.1 CDS EcDH1_4080 NC_017625.1 4417022 4418491 D TIGRFAM: rhamnulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ssn:SSON_4074 rhamnulokinase; rhamnulokinase 4417022..4418491 Escherichia coli DH1 12707734 YP_006093970.1 CDS EcDH1_4081 NC_017625.1 4418488 4419747 D PFAM: L-rhamnose isomerase; KEGG: sbo:SBO_3921 L-rhamnose isomerase; L-rhamnose isomerase 4418488..4419747 Escherichia coli DH1 12707735 YP_006093971.1 CDS EcDH1_4082 NC_017625.1 4420198 4421022 D KEGG: ssn:SSON_4072 rhamnulose-1-phosphate aldolase; TIGRFAM: rhamnulose-1-phosphate aldolase; PFAM: class II aldolase/adducin family protein; rhamnulose-1-phosphate aldolase 4420198..4421022 Escherichia coli DH1 12707736 YP_006093972.1 CDS EcDH1_4083 NC_017625.1 4421032 4421346 D TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; KEGG: sfv:SFV_3594 hypothetical protein; L-rhamnose 1-epimerase 4421032..4421346 Escherichia coli DH1 12707737 YP_006093973.1 CDS EcDH1_4084 NC_017625.1 4421647 4422093 D TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; KEGG: sbo:SBO_3916 PTS system fructose-specific IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 4421647..4422093 Escherichia coli DH1 12707738 YP_006093974.1 CDS EcDH1_4085 NC_017625.1 4422104 4423555 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: sbo:SBO_3915 putative PTS transporter components IIBC; PTS system fructose subfamily transporter subunit IIC 4422104..4423555 Escherichia coli DH1 12707739 YP_006093975.1 CDS EcDH1_4086 NC_017625.1 4423545 4424615 D PFAM: peptidase M18 aminopeptidase I; peptidase M42 family protein; KEGG: sfv:SFV_3597 putative fructose-specific phosphotransferase system protein FrvX; cellulase 4423545..4424615 Escherichia coli DH1 12707740 YP_006093976.1 CDS EcDH1_4087 NC_017625.1 4424615 4426363 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Helix-turn-helix type 11 domain protein; KEGG: ssn:SSON_4067 putative frv operon regulatory protein; transcriptional antiterminator BglG 4424615..4426363 Escherichia coli DH1 12707741 YP_006093977.1 CDS EcDH1_4088 NC_017625.1 4426413 4427468 R KEGG: sbc:SbBS512_E4376 putative lipoprotein; putative lipoprotein complement(4426413..4427468) Escherichia coli DH1 12707742 YP_006093978.1 CDS EcDH1_4089 NC_017625.1 4427621 4428454 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase subunit FdhD; KEGG: sbo:SBO_3909 formate dehydrogenase accessory protein; formate dehydrogenase family accessory protein FdhD complement(4427621..4428454) Escherichia coli DH1 12707743 YP_006093979.1 CDS EcDH1_4090 NC_017625.1 4428648 4431698 D Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ssn:SSON_4063 formate dehydrogenase-O, major subunit; formate dehydrogenase subunit alpha 4428648..4431698 Escherichia coli DH1 12707744 YP_006093980.1 CDS EcDH1_4091 NC_017625.1 4431711 4432613 D TIGRFAM: formate dehydrogenase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Formate dehydrogenase transmembrane domain protein; KEGG: sbc:SbBS512_E4372 formate dehydrogenase-O, iron-sulfur subunit; formate dehydrogenase subunit beta 4431711..4432613 Escherichia coli DH1 12707745 YP_006093981.1 CDS EcDH1_4092 NC_017625.1 4432610 4433245 D TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: sdy:SDY_3851 formate dehydrogenase-O subunit gamma; formate dehydrogenase subunit gamma 4432610..4433245 Escherichia coli DH1 12707746 YP_006093982.1 CDS EcDH1_4093 NC_017625.1 4433242 4434171 D TIGRFAM: formate dehydrogenase accessory protein FdhE; PFAM: formate dehydrogenase accessory protein; KEGG: sdy:SDY_3852 formate dehydrogenase accessory protein FdhE; formate dehydrogenase accessory protein FdhE 4433242..4434171 Escherichia coli DH1 12707747 YP_006093983.1 CDS EcDH1_4094 NC_017625.1 4434319 4434501 R KEGG: sfv:SFV_0528 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; hypothetical protein complement(4434319..4434501) Escherichia coli DH1 12707748 YP_006093984.1 CDS EcDH1_4095 NC_017625.1 4434501 4434743 R KEGG: sbc:SbBS512_E4369 hypothetical protein; hypothetical protein complement(4434501..4434743) Escherichia coli DH1 12707749 YP_006093985.1 CDS EcDH1_4096 NC_017625.1 4434961 4435179 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: sfv:SFV_3606 hypothetical protein; CopG family transcriptional regulator complement(4434961..4435179) Escherichia coli DH1 12707750 YP_006093986.1 CDS EcDH1_4097 NC_017625.1 4435514 4435621 R hypothetical protein complement(4435514..4435621) Escherichia coli DH1 12707751 YP_006093987.1 CDS EcDH1_4098 NC_017625.1 4436032 4436973 R TIGRFAM: thioesterase domain protein; PFAM: GCN5-related N-acetyltransferase; Thioesterase putative; KEGG: sbo:SBO_3902 putative acetyltransferase; thioesterase domain-containing protein complement(4436032..4436973) Escherichia coli DH1 12707752 YP_006093988.1 CDS EcDH1_4099 NC_017625.1 4437018 4437455 R PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: sbc:SbBS512_E4365 D-tyrosyl-tRNA(Tyr) deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(4437018..4437455) Escherichia coli DH1 12707753 YP_006093989.1 CDS EcDH1_4100 NC_017625.1 4437452 4438324 R PFAM: ribonuclease BN; KEGG: sdy:SDY_3857 ribonuclease BN; ribonuclease BN complement(4437452..4438324) Escherichia coli DH1 12707754 YP_006093990.1 CDS EcDH1_4101 NC_017625.1 4438318 4438917 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_4054 phosphatase; HAD-superfamily hydrolase complement(4438318..4438917) Escherichia coli DH1 12707755 YP_006093991.1 CDS EcDH1_4102 NC_017625.1 4439016 4439801 R PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: sfv:SFV_3615 putative DeoR-type transcriptional regulator; DeoR family transcriptional regulator complement(4439016..4439801) Escherichia coli DH1 12707756 YP_006093992.1 CDS EcDH1_4103 NC_017625.1 4439835 4440731 R PFAM: PfkB domain protein; KEGG: sfx:S3791 putative kinase; PfkB domain-containing protein complement(4439835..4440731) Escherichia coli DH1 12707757 YP_006093993.1 CDS EcDH1_4104 NC_017625.1 4440899 4441795 D PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sfv:SFV_3617 putative dehydrogenase; 3-hydroxyisobutyrate dehydrogenase 4440899..4441795 Escherichia coli DH1 12707758 YP_006093994.1 CDS EcDH1_4105 NC_017625.1 4441819 4442697 D PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: sfx:S3793 putative aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 4441819..4442697 Escherichia coli DH1 12707759 YP_006093995.1 CDS EcDH1_4106 NC_017625.1 4442714 4443955 D PFAM: N-acylglucosamine 2-epimerase; KEGG: sfx:S3794 hypothetical protein; N-acylglucosamine 2-epimerase 4442714..4443955 Escherichia coli DH1 12707760 YP_006093996.1 CDS EcDH1_4107 NC_017625.1 4444069 4444995 D PFAM: Aldose 1-epimerase; KEGG: sfv:SFV_3620 putative aldose-1-epimerase; aldose 1-epimerase 4444069..4444995 Escherichia coli DH1 12707761 YP_006093997.1 CDS EcDH1_4108 NC_017625.1 4445194 4447230 D PFAM: glycoside hydrolase family 31; KEGG: sfv:SFV_3621 alpha-glucosidase; glycoside hydrolase family protein 4445194..4447230 Escherichia coli DH1 12707762 YP_006093998.1 CDS EcDH1_4109 NC_017625.1 4447276 4448661 D TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfv:SFV_3622 putative permease; sugar (Glycoside-Pentoside-Hexuronide) transporter 4447276..4448661 Escherichia coli DH1 12707763 YP_006093999.1 CDS EcDH1_4110 NC_017625.1 4448704 4450107 D TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sfx:S3798 putative permease; sugar (Glycoside-Pentoside-Hexuronide) transporter 4448704..4450107 Escherichia coli DH1 12707764 YP_006094000.1 CDS EcDH1_4111 NC_017625.1 4450175 4450867 D PFAM: Oligogalacturonate-specific porin; KEGG: sew:SeSA_A4226 porin OmpL; Oligogalacturonate-specific porin 4450175..4450867 Escherichia coli DH1 12707765 YP_006094001.1 CDS EcDH1_4112 NC_017625.1 4450958 4452223 R PFAM: major facilitator superfamily MFS_1; KEGG: sfv:SFV_3626 putative resistance protein; major facilitator superfamily protein complement(4450958..4452223) Escherichia coli DH1 12707766 YP_006094002.1 CDS EcDH1_4113 NC_017625.1 4452325 4453305 R PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sfx:S3803 hypothetical protein; xylose isomerase domain-containing protein complement(4452325..4453305) Escherichia coli DH1 12707767 YP_006094003.1 CDS EcDH1_4114 NC_017625.1 4453313 4454023 R PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sfv:SFV_3628 putative transcriptional regulator; GntR family transcriptional regulator complement(4453313..4454023) Escherichia coli DH1 12707768 YP_006094004.1 CDS EcDH1_4115 NC_017625.1 4454240 4456063 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: sdy:SDY_3872 GTP-binding protein; GTP-binding protein TypA complement(4454240..4456063) Escherichia coli DH1 12707769 YP_006094005.1 CDS EcDH1_4116 NC_017625.1 4456436 4457845 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sdy:SDY_3873 glutamine synthetase; glutamine synthetase, type I 4456436..4457845 Escherichia coli DH1 12707770 YP_006094006.1 CDS EcDH1_4117 NC_017625.1 4458131 4459180 D KEGG: ssn:SSON_4041 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 4458131..4459180 Escherichia coli DH1 12707771 YP_006094007.1 CDS EcDH1_4118 NC_017625.1 4459192 4460601 D KEGG: sdy:SDY_3875 nitrogen regulation protein NR(I); TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Fis family nitrogen metabolism transcriptional regulator NtrC 4459192..4460601 Escherichia coli DH1 12707772 YP_006094008.1 CDS EcDH1_4119 NC_017625.1 4460713 4460823 D KEGG: ses:SARI_03655 hypothetical protein; hypothetical protein 4460713..4460823 Escherichia coli DH1 12707773 YP_006094009.1 CDS EcDH1_4120 NC_017625.1 4461052 4462425 R KEGG: sbc:SbBS512_E4342 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(4461052..4462425) Escherichia coli DH1 12707774 YP_006094010.1 CDS EcDH1_4121 NC_017625.1 4462614 4463123 R PFAM: protein of unknown function DUF414; KEGG: sbc:SbBS512_E4340 hypothetical protein; hypothetical protein complement(4462614..4463123) Escherichia coli DH1 12707775 YP_006094011.1 CDS EcDH1_4122 NC_017625.1 4463705 4464337 D PFAM: GTP-binding protein HSR1-related; KEGG: sdy:SDY_3878 GTPase EngB; GTP-binding protein HSR1-like protein 4463705..4464337 Escherichia coli DH1 12707776 YP_006094012.1 CDS EcDH1_4123 NC_017625.1 4464718 4467504 R KEGG: sbc:SbBS512_E4337 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(4464718..4467504) Escherichia coli DH1 12707777 YP_006094013.1 CDS EcDH1_4124 NC_017625.1 4467868 4468800 D PFAM: phospholipid/glycerol acyltransferase; KEGG: ssn:SSON_4035 putative endonuclease; phospholipid/glycerol acyltransferase 4467868..4468800 Escherichia coli DH1 12707778 YP_006094014.1 CDS EcDH1_4125 NC_017625.1 4468841 4470271 R PFAM: protein of unknown function DUF945; KEGG: sfx:S3815 hypothetical protein; hypothetical protein complement(4468841..4470271) Escherichia coli DH1 12707779 YP_006094015.1 CDS EcDH1_4126 NC_017625.1 4470426 4471052 R PFAM: DSBA oxidoreductase; KEGG: sbc:SbBS512_E4332 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase complement(4470426..4471052) Escherichia coli DH1 12707780 YP_006094016.1 CDS EcDH1_4127 NC_017625.1 4471069 4472055 R PFAM: aminoglycoside phosphotransferase; protein of unknown function DUF227; KEGG: sdy:SDY_3886 predicted kinase; aminoglycoside phosphotransferase complement(4471069..4472055) Escherichia coli DH1 12707781 YP_006094017.1 CDS EcDH1_4128 NC_017625.1 4472132 4472401 R PFAM: protein of unknown function DUF1040; KEGG: sdy:SDY_3887 hypothetical protein; hypothetical protein complement(4472132..4472401) Escherichia coli DH1 12707782 YP_006094018.1 CDS EcDH1_4129 NC_017625.1 4472471 4473055 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: sbc:SbBS512_E4329 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein MobA 4472471..4473055 Escherichia coli DH1 12707783 YP_006094019.1 CDS EcDH1_4130 NC_017625.1 4473037 4473564 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: sbc:SbBS512_E4328 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB 4473037..4473564 Escherichia coli DH1 12707784 YP_006094020.1 CDS EcDH1_4131 NC_017625.1 4479317 4479862 R KEGG: sdy:SDY_3895 protoporphyrinogen oxidase; Protoporphyrinogen oxidase complement(4479317..4479862) Escherichia coli DH1 12707790 YP_006094021.1 CDS EcDH1_4132 NC_017625.1 4479874 4481325 R TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: sdy:SDY_3896 potassium transporter; TrkH family potassium uptake protein complement(4479874..4481325) Escherichia coli DH1 12707791 YP_006094022.1 CDS EcDH1_4133 NC_017625.1 4481364 4481978 R PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: ssn:SSON_4021 hypothetical protein; hypothetical protein complement(4481364..4481978) Escherichia coli DH1 12707792 YP_006094023.1 CDS EcDH1_4134 NC_017625.1 4481978 4483309 R PFAM: peptidase M24; KEGG: ssn:SSON_4020 proline dipeptidase; peptidase M24 complement(4481978..4483309) Escherichia coli DH1 12707793 YP_006094024.1 CDS EcDH1_4135 NC_017625.1 4483499 4485688 D TIGRFAM: fatty oxidation complex, alpha subunit FadB; PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: ssn:SSON_4019 multifunctional fatty acid oxidation complex subunit alpha; fatty acid oxidation complex subunit FadB 4483499..4485688 Escherichia coli DH1 12707794 YP_006094025.1 CDS EcDH1_4136 NC_017625.1 4485698 4486861 D KEGG: sbc:SbBS512_E4315 acetyl-CoA C-acyltransferase FadA; TIGRFAM: acetyl-CoA acetyltransferase; acetyl-CoA C-acyltransferase FadA; PFAM: Thiolase; acetyl-CoA C-acyltransferase FadA 4485698..4486861 Escherichia coli DH1 12707795 YP_006094026.1 CDS EcDH1_4137 NC_017625.1 4487242 4487943 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ssn:SSON_4017 FMN reductase; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(4487242..4487943) Escherichia coli DH1 12707796 YP_006094027.1 CDS EcDH1_4138 NC_017625.1 4487989 4489482 R TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: ssn:SSON_4016 3-octaprenyl-4-hydroxybenzoate decarboxylase; UbiD family decarboxylase complement(4487989..4489482) Escherichia coli DH1 12707797 YP_006094028.1 CDS EcDH1_4139 NC_017625.1 4489649 4490137 D TIGRFAM: transcriptional activator RfaH; PFAM: NGN domain protein; KEGG: sdy:SDY_3903 transcriptional activator RfaH; transcriptional acivator RfaH 4489649..4490137 Escherichia coli DH1 12707798 YP_006094029.1 CDS EcDH1_4140 NC_017625.1 4490134 4490916 R PFAM: TatD-related deoxyribonuclease; KEGG: sfv:SFV_3659 DNase TatD; TatD-related deoxyribonuclease complement(4490134..4490916) Escherichia coli DH1 12707799 YP_006094030.1 CDS EcDH1_4141 NC_017625.1 4490958 4491734 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sbc:SbBS512_E4310 twin arginine-targeting protein translocase TatC; Sec-independent protein translocase subunit TatC complement(4490958..4491734) Escherichia coli DH1 12707800 YP_006094031.1 CDS EcDH1_4142 NC_017625.1 4491737 4492252 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ssn:SSON_4012 sec-independent translocase; twin-arginine translocation protein subunit TatB complement(4491737..4492252) Escherichia coli DH1 12707801 YP_006094032.1 CDS EcDH1_4143 NC_017625.1 4492256 4492525 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: sdy:SDY_3907 twin argininte translocase protein A; twin-arginine translocation protein, TatA/E family subunit complement(4492256..4492525) Escherichia coli DH1 12707802 YP_006094033.1 CDS EcDH1_4144 NC_017625.1 4492604 4494244 R TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: sdy:SDY_3908 putative ubiquinone biosynthesis protein UbiB; 2-polyprenylphenol 6-hydroxylase complement(4492604..4494244) Escherichia coli DH1 12707803 YP_006094034.1 CDS EcDH1_4145 NC_017625.1 4494241 4494846 R PFAM: Sterol-binding domain protein; KEGG: sbc:SbBS512_E4306 hypothetical protein; Sterol-binding domain-containing protein complement(4494241..4494846) Escherichia coli DH1 12707804 YP_006094035.1 CDS EcDH1_4146 NC_017625.1 4494860 4495615 R TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sdy:SDY_3910 ubiquinone/menaquinone biosynthesis methyltransferase; ubiquinone/menaquinone biosynthesis methyltransferase complement(4494860..4495615) Escherichia coli DH1 12707805 YP_006094036.1 CDS EcDH1_4147 NC_017625.1 4495710 4497137 R PFAM: protein of unknown function DUF195; KEGG: sbo:SBO_3846 DNA recombination protein RmuC; hypothetical protein complement(4495710..4497137) Escherichia coli DH1 12707806 YP_006094037.1 CDS EcDH1_4148 NC_017625.1 4497278 4498039 R TIGRFAM: uridine phosphorylase; PFAM: purine or other phosphorylase family 1; KEGG: sfv:SFV_3667 uridine phosphorylase; uridine phosphorylase complement(4497278..4498039) Escherichia coli DH1 12707807 YP_006094038.1 CDS EcDH1_4149 NC_017625.1 4498301 4499116 D PFAM: dienelactone hydrolase; KEGG: sfl:SF3908 putative enzyme; Carboxymethylenebutenolidase 4498301..4499116 Escherichia coli DH1 12707808 YP_006094039.1 CDS EcDH1_4150 NC_017625.1 4499156 4501417 R KEGG: sdy:SDY_3914 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; TIGRFAM: 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase; PFAM: Methionine synthase vitamin-B12 independent; Cobalamin-independent synthase MetE domain protein; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(4499156..4501417) Escherichia coli DH1 12707809 YP_006094040.1 CDS EcDH1_4151 NC_017625.1 4501654 4502607 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3840 MetR; LysR family transcriptional regulator 4501654..4502607 Escherichia coli DH1 12707810 YP_006094041.1 CDS EcDH1_4152 NC_017625.1 4502495 4503394 R TIGRFAM: carboxylate/amino acid/amine transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: ssn:SSON_4001 hypothetical protein; carboxylate/amino acid/amine transporter complement(4502495..4503394) Escherichia coli DH1 12707811 YP_006094042.1 CDS EcDH1_4153 NC_017625.1 4503470 4504270 R TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: sbc:SbBS512_E4293 hydrolase, Cof family; cof family hydrolase complement(4503470..4504270) Escherichia coli DH1 12707812 YP_006094043.1 CDS EcDH1_4154 NC_017625.1 4504278 4505300 R PFAM: alpha/beta hydrolase fold; KEGG: sbc:SbBS512_E4292 lysophospholipase L2; lysophospholipase complement(4504278..4505300) Escherichia coli DH1 12707813 YP_006094044.1 CDS EcDH1_4155 NC_017625.1 4505411 4506031 D TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E4291 homoserine/homoserine lactone efflux protein; homoserine/threonine efflux pump 4505411..4506031 Escherichia coli DH1 12707814 YP_006094045.1 CDS EcDH1_4156 NC_017625.1 4506093 4506713 R TIGRFAM: homoserine/threonine efflux pump; PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sbc:SbBS512_E4290 threonine efflux protein; homoserine/threonine efflux pump complement(4506093..4506713) Escherichia coli DH1 12707815 YP_006094046.1 CDS EcDH1_4157 NC_017625.1 4506777 4508612 R KEGG: sfx:S3855 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; RecQ familyATP-dependent DNA helicase complement(4506777..4508612) Escherichia coli DH1 12707816 YP_006094047.1 CDS EcDH1_4158 NC_017625.1 4508739 4509608 R PFAM: phospholipase A1; KEGG: sdy:SDY_3922 phospholipase A; Phospholipase A(1) complement(4508739..4509608) Escherichia coli DH1 12707817 YP_006094048.1 CDS EcDH1_4159 NC_017625.1 4509773 4510240 D PFAM: thioesterase superfamily protein; KEGG: sbc:SbBS512_E4287 thioesterase family protein; thioesterase superfamily protein 4509773..4510240 Escherichia coli DH1 12707818 YP_006094049.1 CDS EcDH1_4160 NC_017625.1 4510292 4511182 D TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: sfv:SFV_3679 hypothetical protein; RarD protein, DMT superfamily transporter 4510292..4511182 Escherichia coli DH1 12707819 YP_006094050.1 CDS EcDH1_4161 NC_017625.1 4511277 4511657 D KEGG: sfx:S3859 hypothetical protein; hypothetical protein 4511277..4511657 Escherichia coli DH1 12707820 YP_006094051.1 CDS EcDH1_4162 NC_017625.1 4511671 4512051 D KEGG: sfv:SFV_3681 hypothetical protein; hypothetical protein 4511671..4512051 Escherichia coli DH1 12707821 YP_006094052.1 CDS EcDH1_4163 NC_017625.1 4512094 4513044 R TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: sdy:SDY_3929 magnesium/nickel/cobalt transporter CorA; magnesium and cobalt transport protein CorA complement(4512094..4513044) Escherichia coli DH1 12707822 YP_006094053.1 CDS EcDH1_4164 NC_017625.1 4513288 4513401 R KEGG: sbc:SbBS512_E4280 hypothetical protein; hypothetical protein complement(4513288..4513401) Escherichia coli DH1 12707823 YP_006094054.1 CDS EcDH1_4165 NC_017625.1 4513414 4514178 D KEGG: sdy:SDY_3930 predicted periplasmic protein; hypothetical protein 4513414..4514178 Escherichia coli DH1 12707824 YP_006094055.1 CDS EcDH1_4166 NC_017625.1 4514325 4516487 R TIGRFAM: DNA helicase II; PFAM: UvrD/REP helicase; KEGG: ssn:SSON_3986 DNA-dependent helicase II; DNA helicase II complement(4514325..4516487) Escherichia coli DH1 12707825 YP_006094056.1 CDS EcDH1_4167 NC_017625.1 4516571 4517287 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sbc:SbBS512_E4272 HAD-superfamily hydrolase; HAD-superfamily hydrolase complement(4516571..4517287) Escherichia coli DH1 12707826 YP_006094057.1 CDS EcDH1_4168 NC_017625.1 4517287 4518183 R TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sbc:SbBS512_E4271 tyrosine recombinase XerC; tyrosine recombinase XerC complement(4517287..4518183) Escherichia coli DH1 12707827 YP_006094058.1 CDS EcDH1_4169 NC_017625.1 4518180 4518887 R PFAM: protein of unknown function DUF484; KEGG: sbc:SbBS512_E4270 hypothetical protein; hypothetical protein complement(4518180..4518887) Escherichia coli DH1 12707828 YP_006094059.1 CDS EcDH1_4170 NC_017625.1 4518884 4519708 R PFAM: diaminopimelate epimerase; KEGG: sdy:SDY_3936 diaminopimelate epimerase; diaminopimelate epimerase complement(4518884..4519708) Escherichia coli DH1 12707829 YP_006094060.1 CDS EcDH1_4171 NC_017625.1 4519745 4519948 R KEGG: ssn:SSON_3981 hypothetical protein; hypothetical protein complement(4519745..4519948) Escherichia coli DH1 12707830 YP_006094061.1 CDS EcDH1_4172 NC_017625.1 4520411 4520731 D TIGRFAM: iron donor protein CyaY; PFAM: Frataxin family protein; KEGG: sdy:SDY_3938 frataxin-like protein; iron donor protein CyaY 4520411..4520731 Escherichia coli DH1 12707831 YP_006094062.1 CDS EcDH1_4173 NC_017625.1 4520771 4523317 R PFAM: adenylate cyclase class-I; KEGG: sbc:SbBS512_E4265 adenylate cyclase, class I; putative adenylate cyclase complement(4520771..4523317) Escherichia coli DH1 12707832 YP_006094063.1 CDS EcDH1_4174 NC_017625.1 4523683 4524645 D KEGG: sbo:SBO_3816 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 4523683..4524645 Escherichia coli DH1 12707833 YP_006094064.1 CDS EcDH1_4175 NC_017625.1 4524642 4525382 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: sbo:SBO_3815 uroporphyrinogen-III synthase; uroporphyrinogen-III synthase 4524642..4525382 Escherichia coli DH1 12707834 YP_006094065.1 CDS EcDH1_4176 NC_017625.1 4525404 4526585 D PFAM: protein of unknown function DUF513 hemX; KEGG: sdy:SDY_3943 putative uroporphyrinogen III C-methyltransferase; hypothetical protein 4525404..4526585 Escherichia coli DH1 12707835 YP_006094066.1 CDS EcDH1_4177 NC_017625.1 4526588 4527784 D TIGRFAM: HemY protein; PFAM: HemY domain protein; Tetratricopeptide TPR_2 repeat protein; KEGG: sbc:SbBS512_E4261 HemY protein; HemY protein 4526588..4527784 Escherichia coli DH1 12707836 YP_006094067.1 CDS EcDH1_4178 NC_017625.1 4528463 4530118 D PFAM: sulfatase; KEGG: sdy:SDY_3945 arylsulfatase; sulfatase 4528463..4530118 Escherichia coli DH1 12707837 YP_006094068.1 CDS EcDH1_4179 NC_017625.1 4530277 4531512 R PFAM: Radical SAM domain protein; KEGG: ssn:SSON_3973 putative arylsulfatase regulator; radical SAM protein complement(4530277..4531512) Escherichia coli DH1 12707838 YP_006094069.1 CDS EcDH1_4180 NC_017625.1 4532198 4533583 R PFAM: amino acid permease-associated region; KEGG: sdy:SDY_3952 putative transport protein YifK; amino acid permease complement(4532198..4533583) Escherichia coli DH1 12707843 YP_006094070.1 CDS EcDH1_4181 NC_017625.1 4533774 4534514 R KEGG: sdy:SDY_3953 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase complement(4533774..4534514) Escherichia coli DH1 12707844 YP_006094071.1 CDS EcDH1_4182 NC_017625.1 4534517 4535869 R PFAM: WzyE family protein; KEGG: ssn:SSON_3966 putative enterobacterial common antigen polymerase; WzyE family protein complement(4534517..4535869) Escherichia coli DH1 12707845 YP_006094072.1 CDS EcDH1_4183 NC_017625.1 4535866 4536945 R PFAM: 4-alpha-L-fucosyltransferase; KEGG: sbc:SbBS512_E4128 TDP-Fuc4NAc:lipid II Fuc4Nac transferase; 4-alpha-L-fucosyltransferase complement(4535866..4536945) Escherichia coli DH1 12707846 YP_006094073.1 CDS EcDH1_4184 NC_017625.1 4536942 4538192 R PFAM: polysaccharide biosynthesis protein; KEGG: sbc:SbBS512_E4129 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(4536942..4538192) Escherichia coli DH1 12707847 YP_006094074.1 CDS EcDH1_4185 NC_017625.1 4538194 4539324 R TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sbo:SBO_3802 TDP-4-oxo-6-deoxy-D-glucose transaminase; TDP-4-keto-6-deoxy-D-glucose transaminase complement(4538194..4539324) Escherichia coli DH1 12707849 YP_006094075.1 CDS EcDH1_4186 NC_017625.1 4539329 4540003 R TIGRFAM: TDP-D-fucosamine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: sfv:SFV_3714 TDP-fucosamine acetyltransferase; TDP-D-fucosamine acetyltransferase complement(4539329..4540003) Escherichia coli DH1 12707851 YP_006094076.1 CDS EcDH1_4187 NC_017625.1 4539981 4540862 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sbc:SbBS512_E4132 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase complement(4539981..4540862) Escherichia coli DH1 12707853 YP_006094077.1 CDS EcDH1_4188 NC_017625.1 4540881 4541948 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ssn:SSON_3960 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase complement(4540881..4541948) Escherichia coli DH1 12707855 YP_006094078.1 CDS EcDH1_4189 NC_017625.1 4541948 4543210 R TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: sfv:SFV_3717 UDP-N-acetyl-D-mannosamine dehydrogenase; nucleotide sugar dehydrogenase complement(4541948..4543210) Escherichia coli DH1 12707856 YP_006094079.1 CDS EcDH1_4190 NC_017625.1 4543207 4544337 R PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: sdy:SDY_3962 UDP-N-acetyl glucosamine -2-epimerase; UDP-N-acetylglucosamine 2-epimerase complement(4543207..4544337) Escherichia coli DH1 12707857 YP_006094080.1 CDS EcDH1_4191 NC_017625.1 4544393 4545439 R PFAM: lipopolysaccharide biosynthesis protein; KEGG: sdy:SDY_3963 lipopolysaccharide biosynthesis protein WzzE; lipopolysaccharide biosynthesis protein complement(4544393..4545439) Escherichia coli DH1 12707858 YP_006094081.1 CDS EcDH1_4192 NC_017625.1 4545451 4546554 R TIGRFAM: undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; PFAM: glycosyl transferase family 4; KEGG: sbc:SbBS512_E4137 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase complement(4545451..4546554) Escherichia coli DH1 12707859 YP_006094082.1 CDS EcDH1_4193 NC_017625.1 4546566 4546784 R KEGG: sbo:SBO_3794 hypothetical protein; hypothetical protein complement(4546566..4546784) Escherichia coli DH1 12707860 YP_006094083.1 CDS EcDH1_4194 NC_017625.1 4546794 4548053 R KEGG: sdy:SDY_3966 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor domain protein; Rho termination factor RNA-binding; Ribonuclease B OB region domain; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho complement(4546794..4548053) Escherichia coli DH1 12707861 YP_006094084.1 CDS EcDH1_4195 NC_017625.1 4548138 4548239 R KEGG: sdy:SDY_3967 putative rho operon leader peptide; putative rho operon leader peptide complement(4548138..4548239) Escherichia coli DH1 12707862 YP_006094085.1 CDS EcDH1_4196 NC_017625.1 4548380 4548709 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cko:CKO_00123 hypothetical protein; thioredoxin complement(4548380..4548709) Escherichia coli DH1 12707863 YP_006094086.1 CDS EcDH1_4197 NC_017625.1 4548840 4550105 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: ssn:SSON_3951 ATP-dependent RNA helicase RhlB; DEAD/DEAH box helicase 4548840..4550105 Escherichia coli DH1 12707864 YP_006094087.1 CDS EcDH1_4198 NC_017625.1 4550241 4551725 D PFAM: Ppx/GppA phosphatase; KEGG: sbc:SbBS512_E4142 guanosine-5'-triphosphate,3'-diphosphate diphosphatase; Ppx/GppA phosphatase 4550241..4551725 Escherichia coli DH1 12707865 YP_006094088.1 CDS EcDH1_4199 NC_017625.1 4551772 4553793 R TIGRFAM: ATP-dependent DNA helicase Rep; PFAM: UvrD/REP helicase; KEGG: ssn:SSON_3949 ATP-dependent DNA helicase Rep; ATP-dependent DNA helicase Rep complement(4551772..4553793) Escherichia coli DH1 12707866 YP_006094089.1 CDS EcDH1_4200 NC_017625.1 4554010 4554228 D KEGG: spe:Spro_1358 hypothetical protein; hypothetical protein 4554010..4554228 Escherichia coli DH1 12707867 YP_006094090.1 CDS EcDH1_4201 NC_017625.1 4554657 4554938 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cko:CKO_00116 hypothetical protein; PpiC-type peptidyl-prolyl cis-trans isomerase 4554657..4554938 Escherichia coli DH1 12707868 YP_006094091.1 CDS EcDH1_4202 NC_017625.1 4555025 4556500 R KEGG: sfv:SFV_3729 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase catalytic domain protein; ketol-acid reductoisomerase complement(4555025..4556500) Escherichia coli DH1 12707869 YP_006094092.1 CDS EcDH1_4203 NC_017625.1 4556650 4557543 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sdy:SDY_3975 DNA-binding transcriptional regulator IlvY; LysR family transcriptional regulator 4556650..4557543 Escherichia coli DH1 12707870 YP_006094093.1 CDS EcDH1_4204 NC_017625.1 4557595 4559139 R TIGRFAM: threonine dehydratase, biosynthetic; PFAM: Threonine dehydratase domain protein; Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: ssn:SSON_3943 threonine dehydratase; threonine dehydratase, biosynthetic complement(4557595..4559139) Escherichia coli DH1 12707871 YP_006094094.1 CDS EcDH1_4205 NC_017625.1 4559142 4560992 R KEGG: sbc:SbBS512_E4149 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase complement(4559142..4560992) Escherichia coli DH1 12707872 YP_006094095.1 CDS EcDH1_4206 NC_017625.1 4561057 4561986 R TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: sdy:SDY_3978 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase complement(4561057..4561986) Escherichia coli DH1 12707873 YP_006094096.1 CDS EcDH1_4207 NC_017625.1 4562006 4562269 R KEGG: sdy:SDY_3979 acetolactate synthase 2 regulatory subunit; acetolactate synthase 2 regulatory subunit complement(4562006..4562269) Escherichia coli DH1 12707874 YP_006094097.1 CDS EcDH1_4209 NC_017625.1 4564501 4566021 D KEGG: sfv:SFV_3735 putative ATP-dependent protease; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 4564501..4566021 Escherichia coli DH1 12707876 YP_006094098.1 CDS EcDH1_4210 NC_017625.1 4566046 4566384 R PFAM: protein of unknown function DUF413; KEGG: sdy:SDY_3984 hypothetical protein; hypothetical protein complement(4566046..4566384) Escherichia coli DH1 12707877 YP_006094099.1 CDS EcDH1_4211 NC_017625.1 4566503 4567342 D PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbo:SBO_3775 transcriptional regulator HdfR; LysR family transcriptional regulator 4566503..4567342 Escherichia coli DH1 12707878 YP_006094100.1 CDS EcDH1_4212 NC_017625.1 4573143 4573835 D PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sfv:SFV_3744 hypothetical protein; GntR family transcriptional regulator 4573143..4573835 Escherichia coli DH1 12707885 YP_006094101.1 CDS EcDH1_4213 NC_017625.1 4573858 4575285 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sdy:SDY_3993 putative transport protein; EmrB/QacA subfamily drug resistance transporter 4573858..4575285 Escherichia coli DH1 12707886 YP_006094102.1 CDS EcDH1_4215 NC_017625.1 4576246 4577175 R TIGRFAM: ribokinase; PFAM: PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: sbo:SBO_3766 ribokinase; ribokinase complement(4576246..4577175) Escherichia coli DH1 12707889 YP_006094103.1 CDS EcDH1_4216 NC_017625.1 4577301 4578191 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cko:CKO_00091 D-ribose transporter subunit RbsB; monosaccharide-transporting ATPase complement(4577301..4578191) Escherichia coli DH1 12707891 YP_006094104.1 CDS EcDH1_4217 NC_017625.1 4578216 4579181 R PFAM: inner-membrane translocator; KEGG: ssn:SSON_3920 ribose ABC transporter permease protein; monosaccharide-transporting ATPase complement(4578216..4579181) Escherichia coli DH1 12707893 YP_006094105.1 CDS EcDH1_4218 NC_017625.1 4579186 4580691 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ssn:SSON_3919 D-ribose transporter ATP binding protein; ABC transporter complement(4579186..4580691) Escherichia coli DH1 12707895 YP_006094106.1 CDS EcDH1_4219 NC_017625.1 4580699 4581118 R PFAM: RbsD or FucU transport; KEGG: sbc:SbBS512_E4172 cytoplasmic D-ribose-binding protein RbsD; transport protein RbsD/FucU complement(4580699..4581118) Escherichia coli DH1 12707897 YP_006094107.1 CDS EcDH1_4220 NC_017625.1 4581285 4583153 R TIGRFAM: potassium uptake protein; PFAM: K potassium transporter; KEGG: ssn:SSON_3917 potassium transport protein Kup; potassium uptake protein complement(4581285..4583153) Escherichia coli DH1 12707898 YP_006094108.1 CDS EcDH1_4221 NC_017625.1 4583376 4584872 D PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sbo:SBO_3741 putative 2-component regulator; ATPase 4583376..4584872 Escherichia coli DH1 12707899 YP_006094109.1 CDS EcDH1_4222 NC_017625.1 4584866 4586317 D SMART: von Willebrand factor type A; KEGG: sbo:SBO_3742 hypothetical protein; von Willebrand factor type A 4584866..4586317 Escherichia coli DH1 12707900 YP_006094110.1 CDS EcDH1_4223 NC_017625.1 4586322 4587314 R KEGG: sdy:SDY_4004 asparagine synthetase AsnA; TIGRFAM: aspartate/ammonia ligase; PFAM: aspartate--ammonia ligase; aspartate/ammonia ligase complement(4586322..4587314) Escherichia coli DH1 12707901 YP_006094111.1 CDS EcDH1_4224 NC_017625.1 4587466 4587924 D PFAM: regulatory protein AsnC/Lrp family; KEGG: sdy:SDY_4005 DNA-binding transcriptional regulator AsnC; AsnC family transcriptional regulator 4587466..4587924 Escherichia coli DH1 12707902 YP_006094112.1 CDS EcDH1_4225 NC_017625.1 4588014 4588457 D PFAM: flavodoxin/nitric oxide synthase; KEGG: sbc:SbBS512_E4179 MioC protein; flavodoxin/nitric oxide synthase 4588014..4588457 Escherichia coli DH1 12707903 YP_006094113.1 CDS EcDH1_4226 NC_017625.1 4588836 4590725 D TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: sbo:SBO_3746 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; glucose inhibited division protein A 4588836..4590725 Escherichia coli DH1 12707904 YP_006094114.1 CDS EcDH1_4227 NC_017625.1 4590789 4591412 D TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: sbc:SbBS512_E4181 methyltransferase GidB; methyltransferase GidB 4590789..4591412 Escherichia coli DH1 12707905 YP_006094115.1 CDS EcDH1_4228 NC_017625.1 4592029 4592409 D PFAM: ATP synthase I chain; KEGG: sdy:SDY_4009 F0F1 ATP synthase subunit I; ATP synthase I chain 4592029..4592409 Escherichia coli DH1 12707906 YP_006094116.1 CDS EcDH1_4229 NC_017625.1 4592418 4593233 D KEGG: sbc:SbBS512_E4183 ATP synthase F0, A subunit; TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; ATP synthase F0 subunit A 4592418..4593233 Escherichia coli DH1 12707907 YP_006094117.1 CDS EcDH1_4230 NC_017625.1 4593280 4593519 D TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: kpn:KPN_04142 ATP synthase subunit C; ATP synthase F0 subunit C 4593280..4593519 Escherichia coli DH1 12707908 YP_006094118.1 CDS EcDH1_4231 NC_017625.1 4593581 4594051 D TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: sdy:SDY_4012 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B 4593581..4594051 Escherichia coli DH1 12707909 YP_006094119.1 CDS EcDH1_4232 NC_017625.1 4594066 4594599 D TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: sbc:SbBS512_E4186 ATP synthase F1, delta subunit; ATP synthase F1 subunit delta 4594066..4594599 Escherichia coli DH1 12707910 YP_006094120.1 CDS EcDH1_4233 NC_017625.1 4594612 4596153 D KEGG: sdy:SDY_4014 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 alpha subunit; ATP synthase F1 subunit alpha 4594612..4596153 Escherichia coli DH1 12707911 YP_006094121.1 CDS EcDH1_4234 NC_017625.1 4596204 4597067 D KEGG: sdy:SDY_4015 F0F1 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 4596204..4597067 Escherichia coli DH1 12707912 YP_006094122.1 CDS EcDH1_4235 NC_017625.1 4597094 4598476 D KEGG: sbc:SbBS512_E4189 ATP synthase F1, beta subunit; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta 4597094..4598476 Escherichia coli DH1 12707913 YP_006094123.1 CDS EcDH1_4236 NC_017625.1 4598497 4598916 D TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: sdy:SDY_4017 F0F1 ATP synthase subunit epsilon; ATP synthase F1 subunit epsilon 4598497..4598916 Escherichia coli DH1 12707914 YP_006094124.1 CDS EcDH1_4237 NC_017625.1 4599269 4600639 D TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: sdy:SDY_4018 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; UDP-N-acetylglucosamine pyrophosphorylase 4599269..4600639 Escherichia coli DH1 12707915 YP_006094125.1 CDS EcDH1_4238 NC_017625.1 4600801 4602630 D TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: sfv:SFV_3755 D-fructose-6-phosphate amidotransferase; glucosamine/fructose-6-phosphate aminotransferase 4600801..4602630 Escherichia coli DH1 12707916 YP_006094126.1 CDS EcDH1_4239 NC_017625.1 4602944 4603984 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sbc:SbBS512_E4200 phosphate ABC transporter, periplasmic phosphate-binding protein PstS; phosphate ABC transporter substrate-binding protein 4602944..4603984 Escherichia coli DH1 12707917 YP_006094127.1 CDS EcDH1_4240 NC_017625.1 4604071 4605030 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sbc:SbBS512_E4201 phosphate ABC transporter, permease protein PstC; phosphate ABC transporter permease 4604071..4605030 Escherichia coli DH1 12707918 YP_006094128.1 CDS EcDH1_4241 NC_017625.1 4605030 4605920 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfx:S4043 phosphate transporter permease subunit; phosphate ABC transporter permease 4605030..4605920 Escherichia coli DH1 12707919 YP_006094129.1 CDS EcDH1_4242 NC_017625.1 4606103 4606876 D KEGG: sdy:SDY_4025 phosphate transporter subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 4606103..4606876 Escherichia coli DH1 12707920 YP_006094130.1 CDS EcDH1_4243 NC_017625.1 4606891 4607616 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: sbc:SbBS512_E4204 phosphate transport system regulatory protein PhoU; phosphate uptake regulator PhoU 4606891..4607616 Escherichia coli DH1 12707921 YP_006094131.1 CDS EcDH1_4244 NC_017625.1 4607902 4608738 D PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: sfv:SFV_3784 transcriptional antiterminator BglG; transcriptional antiterminator BglG 4607902..4608738 Escherichia coli DH1 12707922 YP_006094132.1 CDS EcDH1_4245 NC_017625.1 4608872 4610749 D TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, maltose and glucose-specific subfamily, IIC subunit; PTS system, beta-glucoside-specific IIABC subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC; KEGG: ssn:SSON_3912 beta-glucoside-specific PTS system components IIABC; PTS system beta-glucoside-specific transporter subunit IIABC 4608872..4610749 Escherichia coli DH1 12707923 YP_006094133.1 CDS EcDH1_4246 NC_017625.1 4610768 4612180 D PFAM: glycoside hydrolase family 1; KEGG: sfv:SFV_3786 phospho-beta-glucosidase B; cryptic; glycoside hydrolase 4610768..4612180 Escherichia coli DH1 12707924 YP_006094134.1 CDS EcDH1_4247 NC_017625.1 4612249 4613865 D PFAM: porin LamB type; KEGG: ssn:SSON_3915 putative receptor protein; LamB type porin 4612249..4613865 Escherichia coli DH1 12707925 YP_006094135.1 CDS EcDH1_4248 NC_017625.1 4613892 4615061 D PFAM: putative esterase; glycoside hydrolase family 13 domain protein; KEGG: sfx:S4034 putative xylanase; glycoside hydrolase family protein 4613892..4615061 Escherichia coli DH1 12707926 YP_006094136.1 CDS EcDH1_4249 NC_017625.1 4615076 4615798 D PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: sfv:SFV_3789 putative 6-phosphogluconolactonase; glucosamine/galactosamine-6-phosphate isomerase 4615076..4615798 Escherichia coli DH1 12707927 YP_006094137.1 CDS EcDH1_4250 NC_017625.1 4615860 4616447 R PFAM: protein of unknown function UPF0167; KEGG: sfv:SFV_3790 hypothetical protein; hypothetical protein complement(4615860..4616447) Escherichia coli DH1 12707928 YP_006094138.1 CDS EcDH1_4251 NC_017625.1 4616496 4616963 R KEGG: ssn:SSON_3560 predicted inner membrane protein; inner membrane protein complement(4616496..4616963) Escherichia coli DH1 12707929 YP_006094139.1 CDS EcDH1_4252 NC_017625.1 4617030 4617695 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ssn:SSON_3559 predicted hydrolase; HAD-superfamily hydrolase complement(4617030..4617695) Escherichia coli DH1 12707930 YP_006094140.1 CDS EcDH1_4253 NC_017625.1 4617860 4619197 D PFAM: Xanthine/uracil/vitamin C permease; KEGG: ssn:SSON_3558 putative membrane/transport protein; xanthine/uracil/vitamin C permease 4617860..4619197 Escherichia coli DH1 12707931 YP_006094141.1 CDS EcDH1_4254 NC_017625.1 4619251 4619817 R PFAM: NADPH-dependent FMN reductase; KEGG: sfv:SFV_3798 hypothetical protein; NADPH-dependent FMN reductase complement(4619251..4619817) Escherichia coli DH1 12707932 YP_006094142.1 CDS EcDH1_4255 NC_017625.1 4619839 4620588 R KEGG: sdy:SDY_4201 hypothetical protein; hypothetical protein complement(4619839..4620588) Escherichia coli DH1 12707933 YP_006094143.1 CDS EcDH1_4256 NC_017625.1 4620745 4621704 R PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sbc:SbBS512_E4211 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(4620745..4621704) Escherichia coli DH1 12707934 YP_006094144.1 CDS EcDH1_4257 NC_017625.1 4621679 4622854 R PFAM: major facilitator superfamily MFS_1; KEGG: sbc:SbBS512_E4212 multidrug resistance protein MdtL; major facilitator superfamily protein complement(4621679..4622854) Escherichia coli DH1 12707935 YP_006094145.1 CDS EcDH1_4258 NC_017625.1 4622986 4624233 R TIGRFAM: aromatic amino acid transporter; PFAM: aromatic amino acid permease; KEGG: sbo:SBO_3666 tryptophan permease TnaB; aromatic amino acid transporter complement(4622986..4624233) Escherichia coli DH1 12707936 YP_006094146.1 CDS EcDH1_4259 NC_017625.1 4624324 4625739 R KEGG: sfv:SFV_3805 tryptophanase; TIGRFAM: tryptophanase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; tryptophanase complement(4624324..4625739) Escherichia coli DH1 12707937 YP_006094147.1 CDS EcDH1_4260 NC_017625.1 4626277 4627641 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: sbc:SbBS512_E4219 tRNA modification GTPase TrmE; tRNA modification GTPase TrmE complement(4626277..4627641) Escherichia coli DH1 12707938 YP_006094148.1 CDS EcDH1_4261 NC_017625.1 4627747 4629393 R TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: ssn:SSON_3656 putative inner membrane protein translocase component YidC; YidC translocase/secretase complement(4627747..4629393) Escherichia coli DH1 12707939 YP_006094149.1 CDS EcDH1_4262 NC_017625.1 4629617 4629943 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: sdy:SDY_4186 ribonuclease P; ribonuclease P protein component complement(4629617..4629943) Escherichia coli DH1 12707940 YP_006094150.1 CDS EcDH1_4263 NC_017625.1 4629993 4630133 R PFAM: ribosomal protein L34; KEGG: kpe:KPK_5567 ribosomal protein L34; 50S ribosomal protein L34 complement(4629993..4630133) Escherichia coli DH1 12707941 EcDH1_R0001 tRNA EcDH1_R0001 NC_017625.1 47450 47540 R tRNA-Sec complement(47450..47540) Escherichia coli DH1 12703605 EcDH1_R0002 tRNA EcDH1_R0002 NC_017625.1 175071 175147 D tRNA-Pro 175071..175147 Escherichia coli DH1 12703725 EcDH1_R0004 tRNA EcDH1_R0004 NC_017625.1 456612 456688 D tRNA-Ile 456612..456688 Escherichia coli DH1 12703995 EcDH1_R0005 tRNA EcDH1_R0005 NC_017625.1 456731 456806 D tRNA-Ala 456731..456806 Escherichia coli DH1 12703996 EcDH1_R0008 tRNA EcDH1_R0008 NC_017625.1 460109 460184 D tRNA-Thr 460109..460184 Escherichia coli DH1 12703999 EcDH1_R0010 tRNA EcDH1_R0010 NC_017625.1 561606 561692 D tRNA-Leu 561606..561692 Escherichia coli DH1 12704099 EcDH1_R0011 tRNA EcDH1_R0011 NC_017625.1 565475 565551 D tRNA-Met 565475..565551 Escherichia coli DH1 12704102 EcDH1_R0013 tRNA EcDH1_R0013 NC_017625.1 668091 668166 R tRNA-Met complement(668091..668166) Escherichia coli DH1 12704201 EcDH1_R0014 tRNA EcDH1_R0014 NC_017625.1 773322 773397 R tRNA-Phe complement(773322..773397) Escherichia coli DH1 12704299 EcDH1_R0016 tRNA EcDH1_R0016 NC_017625.1 884706 884779 D tRNA-Gly 884706..884779 Escherichia coli DH1 12704400 EcDH1_R0017 tRNA EcDH1_R0017 NC_017625.1 936080 936156 R tRNA-Met complement(936080..936156) Escherichia coli DH1 12704448 EcDH1_R0018 tRNA EcDH1_R0018 NC_017625.1 936190 936266 R tRNA-Met complement(936190..936266) Escherichia coli DH1 12704449 EcDH1_R0019 tRNA EcDH1_R0019 NC_017625.1 936300 936376 R tRNA-Met complement(936300..936376) Escherichia coli DH1 12704450 EcDH1_R0020 tRNA EcDH1_R0020 NC_017625.1 1065118 1065210 D tRNA-Ser 1065118..1065210 Escherichia coli DH1 12704570 EcDH1_R0021 tRNA EcDH1_R0021 NC_017625.1 1065214 1065290 D tRNA-Arg 1065214..1065290 Escherichia coli DH1 12704571 EcDH1_R0022 tRNA EcDH1_R0022 NC_017625.1 1065489 1065565 D tRNA-Arg 1065489..1065565 Escherichia coli DH1 12704572 EcDH1_R0023 tRNA EcDH1_R0023 NC_017625.1 1065628 1065704 D tRNA-Arg 1065628..1065704 Escherichia coli DH1 12704573 EcDH1_R0024 tRNA EcDH1_R0024 NC_017625.1 1065903 1065979 D tRNA-Arg 1065903..1065979 Escherichia coli DH1 12704574 EcDH1_R0025 tRNA EcDH1_R0025 NC_017625.1 1097925 1098000 D tRNA-Met 1097925..1098000 Escherichia coli DH1 12704607 EcDH1_R0028 tRNA EcDH1_R0028 NC_017625.1 1154318 1154393 D tRNA-Glu 1154318..1154393 Escherichia coli DH1 12704663 EcDH1_R0031 tRNA EcDH1_R0031 NC_017625.1 1355644 1355719 R tRNA-Lys complement(1355644..1355719) Escherichia coli DH1 12704844 EcDH1_R0032 tRNA EcDH1_R0032 NC_017625.1 1355724 1355799 R tRNA-Val complement(1355724..1355799) Escherichia coli DH1 12704845 EcDH1_R0033 tRNA EcDH1_R0033 NC_017625.1 1355846 1355921 R tRNA-Val complement(1355846..1355921) Escherichia coli DH1 12704846 EcDH1_R0034 tRNA EcDH1_R0034 NC_017625.1 1355966 1356041 R tRNA-Val complement(1355966..1356041) Escherichia coli DH1 12704847 EcDH1_R0035 tRNA EcDH1_R0035 NC_017625.1 1358741 1358816 D tRNA-Ala 1358741..1358816 Escherichia coli DH1 12704851 EcDH1_R0036 tRNA EcDH1_R0036 NC_017625.1 1358856 1358931 D tRNA-Ala 1358856..1358931 Escherichia coli DH1 12704852 EcDH1_R0037 tRNA EcDH1_R0037 NC_017625.1 1410589 1410663 R tRNA-Arg complement(1410589..1410663) Escherichia coli DH1 12704901 EcDH1_R0038 tRNA EcDH1_R0038 NC_017625.1 1590572 1590648 R tRNA-Pro complement(1590572..1590648) Escherichia coli DH1 12705061 EcDH1_R0039 tRNA EcDH1_R0039 NC_017625.1 1815720 1815795 R tRNA-Asn complement(1815720..1815795) Escherichia coli DH1 12705260 EcDH1_R0040 tRNA EcDH1_R0040 NC_017625.1 1818129 1818204 R tRNA-Asn complement(1818129..1818204) Escherichia coli DH1 12705263 EcDH1_R0041 tRNA EcDH1_R0041 NC_017625.1 1819953 1820028 D tRNA-Asn 1819953..1820028 Escherichia coli DH1 12705265 EcDH1_R0042 tRNA EcDH1_R0042 NC_017625.1 1833431 1833506 R tRNA-Asn complement(1833431..1833506) Escherichia coli DH1 12705272 EcDH1_R0043 tRNA EcDH1_R0043 NC_017625.1 1834498 1834587 D tRNA-Ser 1834498..1834587 Escherichia coli DH1 12705274 EcDH1_R0044 tRNA EcDH1_R0044 NC_017625.1 1885938 1886013 D tRNA-Gly 1885938..1886013 Escherichia coli DH1 12705333 EcDH1_R0045 tRNA EcDH1_R0045 NC_017625.1 1886068 1886141 D tRNA-Cys 1886068..1886141 Escherichia coli DH1 12705334 EcDH1_R0046 tRNA EcDH1_R0046 NC_017625.1 1886154 1886240 D tRNA-Leu 1886154..1886240 Escherichia coli DH1 12705335 EcDH1_R0047 tRNA EcDH1_R0047 NC_017625.1 2131886 2131962 R tRNA-Val complement(2131886..2131962) Escherichia coli DH1 12705577 EcDH1_R0048 tRNA EcDH1_R0048 NC_017625.1 2131967 2132043 R tRNA-Val complement(2131967..2132043) Escherichia coli DH1 12705578 EcDH1_R0049 tRNA EcDH1_R0049 NC_017625.1 2590856 2590940 D tRNA-Tyr 2590856..2590940 Escherichia coli DH1 12706021 EcDH1_R0050 tRNA EcDH1_R0050 NC_017625.1 2591150 2591234 D tRNA-Tyr 2591150..2591234 Escherichia coli DH1 12706022 EcDH1_R0051 tRNA EcDH1_R0051 NC_017625.1 2782087 2782174 D tRNA-Ser 2782087..2782174 Escherichia coli DH1 12706218 EcDH1_R0052 tRNA EcDH1_R0052 NC_017625.1 2849407 2849494 D tRNA-Ser 2849407..2849494 Escherichia coli DH1 12706279 EcDH1_R0053 tRNA EcDH1_R0053 NC_017625.1 2955148 2955235 D tRNA-Ser 2955148..2955235 Escherichia coli DH1 12706367 EcDH1_R0054 tRNA EcDH1_R0054 NC_017625.1 3099467 3099542 R tRNA-Lys complement(3099467..3099542) Escherichia coli DH1 12706501 EcDH1_R0055 tRNA EcDH1_R0055 NC_017625.1 3099675 3099750 R tRNA-Lys complement(3099675..3099750) Escherichia coli DH1 12706502 EcDH1_R0056 tRNA EcDH1_R0056 NC_017625.1 3099897 3099972 R tRNA-Lys complement(3099897..3099972) Escherichia coli DH1 12706503 EcDH1_R0057 tRNA EcDH1_R0057 NC_017625.1 3099976 3100051 R tRNA-Val complement(3099976..3100051) Escherichia coli DH1 12706504 EcDH1_R0058 tRNA EcDH1_R0058 NC_017625.1 3100201 3100276 R tRNA-Lys complement(3100201..3100276) Escherichia coli DH1 12706505 EcDH1_R0059 tRNA EcDH1_R0059 NC_017625.1 3100279 3100354 R tRNA-Val complement(3100279..3100354) Escherichia coli DH1 12706506 EcDH1_R0060 tRNA EcDH1_R0060 NC_017625.1 3100490 3100565 R tRNA-Lys complement(3100490..3100565) Escherichia coli DH1 12706507 EcDH1_R0061 tRNA EcDH1_R0061 NC_017625.1 3183986 3184062 D tRNA-Met 3183986..3184062 Escherichia coli DH1 12706579 EcDH1_R0062 tRNA EcDH1_R0062 NC_017625.1 3184072 3184156 D tRNA-Leu 3184072..3184156 Escherichia coli DH1 12706580 EcDH1_R0063 tRNA EcDH1_R0063 NC_017625.1 3184180 3184254 D tRNA-Gln 3184180..3184254 Escherichia coli DH1 12706581 EcDH1_R0064 tRNA EcDH1_R0064 NC_017625.1 3184289 3184363 D tRNA-Gln 3184289..3184363 Escherichia coli DH1 12706582 EcDH1_R0065 tRNA EcDH1_R0065 NC_017625.1 3184379 3184455 D tRNA-Met 3184379..3184455 Escherichia coli DH1 12706583 EcDH1_R0066 tRNA EcDH1_R0066 NC_017625.1 3184503 3184577 D tRNA-Gln 3184503..3184577 Escherichia coli DH1 12706584 EcDH1_R0114 tRNA EcDH1_R0114 NC_017625.1 3184614 3184689 D tRNA-Gln 3184614..3184689 Escherichia coli DH1 12706585 EcDH1_R0067 tRNA EcDH1_R0067 NC_017625.1 3306156 3306232 R tRNA-Arg complement(3306156..3306232) Escherichia coli DH1 12706700 EcDH1_R0069 tRNA EcDH1_R0069 NC_017625.1 3525541 3525621 R tRNA-OTHER complement(3525541..3525621) Escherichia coli DH1 12706904 EcDH1_R0070 tRNA EcDH1_R0070 NC_017625.1 3573701 3573777 R tRNA-Thr complement(3573701..3573777) Escherichia coli DH1 12706948 EcDH1_R0071 tRNA EcDH1_R0071 NC_017625.1 3609208 3609283 R tRNA-Thr complement(3609208..3609283) Escherichia coli DH1 12706990 EcDH1_R0072 tRNA EcDH1_R0072 NC_017625.1 3634371 3634447 R tRNA-Asp complement(3634371..3634447) Escherichia coli DH1 12707020 EcDH1_R0073 tRNA EcDH1_R0073 NC_017625.1 3642374 3642450 R tRNA-Asp complement(3642374..3642450) Escherichia coli DH1 12707030 EcDH1_R0076 tRNA EcDH1_R0076 NC_017625.1 3645803 3645878 R tRNA-Ala complement(3645803..3645878) Escherichia coli DH1 12707033 EcDH1_R0077 tRNA EcDH1_R0077 NC_017625.1 3645921 3645997 R tRNA-Ile complement(3645921..3645997) Escherichia coli DH1 12707034 EcDH1_R0079 tRNA EcDH1_R0079 NC_017625.1 3906628 3906714 D tRNA-Leu 3906628..3906714 Escherichia coli DH1 12707263 EcDH1_R0080 tRNA EcDH1_R0080 NC_017625.1 3906743 3906829 D tRNA-Leu 3906743..3906829 Escherichia coli DH1 12707264 EcDH1_R0081 tRNA EcDH1_R0081 NC_017625.1 3906864 3906950 D tRNA-Leu 3906864..3906950 Escherichia coli DH1 12707265 EcDH1_R0082 tRNA EcDH1_R0082 NC_017625.1 4017316 4017400 R tRNA-Leu complement(4017316..4017400) Escherichia coli DH1 12707365 EcDH1_R0083 tRNA EcDH1_R0083 NC_017625.1 4121923 4121998 R tRNA-Gly complement(4121923..4121998) Escherichia coli DH1 12707466 EcDH1_R0084 tRNA EcDH1_R0084 NC_017625.1 4122034 4122109 R tRNA-Gly complement(4122034..4122109) Escherichia coli DH1 12707467 EcDH1_R0085 tRNA EcDH1_R0085 NC_017625.1 4122146 4122221 R tRNA-Gly complement(4122146..4122221) Escherichia coli DH1 12707468 EcDH1_R0086 tRNA EcDH1_R0086 NC_017625.1 4151955 4152030 D tRNA-Phe 4151955..4152030 Escherichia coli DH1 12707499 EcDH1_R0089 tRNA EcDH1_R0089 NC_017625.1 4304621 4304696 R tRNA-Glu complement(4304621..4304696) Escherichia coli DH1 12707631 EcDH1_R0091 tRNA EcDH1_R0091 NC_017625.1 4338641 4338716 R tRNA-Thr complement(4338641..4338716) Escherichia coli DH1 12707662 EcDH1_R0092 tRNA EcDH1_R0092 NC_017625.1 4338723 4338797 R tRNA-Gly complement(4338723..4338797) Escherichia coli DH1 12707663 EcDH1_R0093 tRNA EcDH1_R0093 NC_017625.1 4338914 4338998 R tRNA-Tyr complement(4338914..4338998) Escherichia coli DH1 12707664 EcDH1_R0094 tRNA EcDH1_R0094 NC_017625.1 4339007 4339082 R tRNA-Thr complement(4339007..4339082) Escherichia coli DH1 12707665 EcDH1_R0097 tRNA EcDH1_R0097 NC_017625.1 4346023 4346098 R tRNA-Glu complement(4346023..4346098) Escherichia coli DH1 12707671 EcDH1_R0101 tRNA EcDH1_R0101 NC_017625.1 4477135 4477210 R tRNA-Ala complement(4477135..4477210) Escherichia coli DH1 12707787 EcDH1_R0102 tRNA EcDH1_R0102 NC_017625.1 4477253 4477329 R tRNA-Ile complement(4477253..4477329) Escherichia coli DH1 12707788 EcDH1_R0104 tRNA EcDH1_R0104 NC_017625.1 4531659 4531735 R tRNA-Pro complement(4531659..4531735) Escherichia coli DH1 12707839 EcDH1_R0105 tRNA EcDH1_R0105 NC_017625.1 4531778 4531864 R tRNA-Leu complement(4531778..4531864) Escherichia coli DH1 12707840 EcDH1_R0106 tRNA EcDH1_R0106 NC_017625.1 4531885 4531960 R tRNA-His complement(4531885..4531960) Escherichia coli DH1 12707841 EcDH1_R0107 tRNA EcDH1_R0107 NC_017625.1 4532019 4532095 R tRNA-Arg complement(4532019..4532095) Escherichia coli DH1 12707842 EcDH1_R0108 tRNA EcDH1_R0108 NC_017625.1 4567438 4567513 R tRNA-Trp complement(4567438..4567513) Escherichia coli DH1 12707879 EcDH1_R0109 tRNA EcDH1_R0109 NC_017625.1 4567522 4567598 R tRNA-Asp complement(4567522..4567598) Escherichia coli DH1 12707880 EcDH1_R0112 tRNA EcDH1_R0112 NC_017625.1 4570960 4571035 R tRNA-Glu complement(4570960..4571035) Escherichia coli DH1 12707883 EcDH1_R0003 rRNA EcDH1_R0003 NC_017625.1 455009 456538 D 16S ribosomal RNA 455009..456538 Escherichia coli DH1 12703994 EcDH1_R0006 rRNA EcDH1_R0006 NC_017625.1 456983 459884 D 23S ribosomal RNA 456983..459884 Escherichia coli DH1 12703997 EcDH1_R0007 rRNA EcDH1_R0007 NC_017625.1 459981 460095 D 5S ribosomal RNA 459981..460095 Escherichia coli DH1 12703998 EcDH1_R0009 rRNA EcDH1_R0009 NC_017625.1 460226 460340 D 5S ribosomal RNA 460226..460340 Escherichia coli DH1 12704000 EcDH1_R0027 rRNA EcDH1_R0027 NC_017625.1 1152612 1154141 D 16S ribosomal RNA 1152612..1154141 Escherichia coli DH1 12704662 EcDH1_R0029 rRNA EcDH1_R0029 NC_017625.1 1154580 1157481 D 23S ribosomal RNA 1154580..1157481 Escherichia coli DH1 12704664 EcDH1_R0030 rRNA EcDH1_R0030 NC_017625.1 1157578 1157692 D 5S ribosomal RNA 1157578..1157692 Escherichia coli DH1 12704665 EcDH1_R0074 rRNA EcDH1_R0074 NC_017625.1 3642504 3642618 R 5S ribosomal RNA complement(3642504..3642618) Escherichia coli DH1 12707031 EcDH1_R0075 rRNA EcDH1_R0075 NC_017625.1 3642716 3645617 R 23S ribosomal RNA complement(3642716..3645617) Escherichia coli DH1 12707032 EcDH1_R0078 rRNA EcDH1_R0078 NC_017625.1 3646071 3647600 R 16S ribosomal RNA complement(3646071..3647600) Escherichia coli DH1 12707035 EcDH1_R0087 rRNA EcDH1_R0087 NC_017625.1 4301312 4301426 R 5S ribosomal RNA complement(4301312..4301426) Escherichia coli DH1 12707629 EcDH1_R0088 rRNA EcDH1_R0088 NC_017625.1 4301524 4304425 R 23S ribosomal RNA complement(4301524..4304425) Escherichia coli DH1 12707630 EcDH1_R0090 rRNA EcDH1_R0090 NC_017625.1 4304787 4306316 R 16S ribosomal RNA complement(4304787..4306316) Escherichia coli DH1 12707632 EcDH1_R0095 rRNA EcDH1_R0095 NC_017625.1 4342715 4342829 R 5S ribosomal RNA complement(4342715..4342829) Escherichia coli DH1 12707669 EcDH1_R0096 rRNA EcDH1_R0096 NC_017625.1 4342926 4345827 R 23S ribosomal RNA complement(4342926..4345827) Escherichia coli DH1 12707670 EcDH1_R0098 rRNA EcDH1_R0098 NC_017625.1 4346275 4347804 R 16S ribosomal RNA complement(4346275..4347804) Escherichia coli DH1 12707672 EcDH1_R0099 rRNA EcDH1_R0099 NC_017625.1 4473835 4473949 R 5S ribosomal RNA complement(4473835..4473949) Escherichia coli DH1 12707785 EcDH1_R0100 rRNA EcDH1_R0100 NC_017625.1 4474047 4476949 R 23S ribosomal RNA complement(4474047..4476949) Escherichia coli DH1 12707786 EcDH1_R0103 rRNA EcDH1_R0103 NC_017625.1 4477403 4478932 R 16S ribosomal RNA complement(4477403..4478932) Escherichia coli DH1 12707789 EcDH1_R0110 rRNA EcDH1_R0110 NC_017625.1 4567652 4567766 R 5S ribosomal RNA complement(4567652..4567766) Escherichia coli DH1 12707881 EcDH1_R0111 rRNA EcDH1_R0111 NC_017625.1 4567863 4570764 R 23S ribosomal RNA complement(4567863..4570764) Escherichia coli DH1 12707882 EcDH1_R0113 rRNA EcDH1_R0113 NC_017625.1 4571126 4572655 R 16S ribosomal RNA complement(4571126..4572655) Escherichia coli DH1 12707884